Confirmation of the modified Bean model from simulations of superconducting vortices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Richardson, R.A.; Pla, O.; Nori, F.

From a very simple description of vortices and pinning centers, we obtain nonlinear density profiles of vortices in type-II dirty superconductors that result from changing an external magnetic field. The results confirm a modified Bean model description of these systems, following the Kim empirical form that relates the current inside the material to the local magnetic field. We also obtain realistic magnetization hysteresis loops and examine the discrete evolution of the density profiles in our systems. This evolution is not continuous, but takes place by the occurrence of avalanches of vortices promoted by the addition or extraction of vortices frommore » the edges of the system.« less

Neighboring Genes Show Correlated Evolution in Gene Expression.

PubMed

Ghanbarian, Avazeh T; Hurst, Laurence D

2015-07-01

When considering the evolution of a gene's expression profile, we commonly assume that this is unaffected by its genomic neighborhood. This is, however, in contrast to what we know about the lack of autonomy between neighboring genes in gene expression profiles in extant taxa. Indeed, in all eukaryotic genomes genes of similar expression-profile tend to cluster, reflecting chromatin level dynamics. Does it follow that if a gene increases expression in a particular lineage then the genomic neighbors will also increase in their expression or is gene expression evolution autonomous? To address this here we consider evolution of human gene expression since the human-chimp common ancestor, allowing for both variation in estimation of current expression level and error in Bayesian estimation of the ancestral state. We find that in all tissues and both sexes, the change in gene expression of a focal gene on average predicts the change in gene expression of neighbors. The effect is highly pronounced in the immediate vicinity (<100 kb) but extends much further. Sex-specific expression change is also genomically clustered. As genes increasing their expression in humans tend to avoid nuclear lamina domains and be enriched for the gene activator 5-hydroxymethylcytosine, we conclude that, most probably owing to chromatin level control of gene expression, a change in gene expression of one gene likely affects the expression evolution of neighbors, what we term expression piggybacking, an analog of hitchhiking. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Reconstruction of Pressure Profile Evolution during Levitated Dipole Experiments

NASA Astrophysics Data System (ADS)

Mauel, M.; Garnier, D.; Boxer, A.; Ellsworth, J.; Kesner, J.

2008-11-01

Magnetic levitation of the LDX superconducting dipole causes significant changes in the measured diamagnetic flux and what appears to be an isotropic plasma pressure profile (p˜p||). This poster describes the reconstruction of plasma current and plasma pressure profiles from external measurements of the equilibrium magnetic field, which vary substantially as a function of time depending upon variations in neutral pressure and multifrequency ECRH power levels. Previous free-boundary reconstructions of plasma equilibrium showed the plasma to be anisotropic and highly peaked at the location of the cyclotron resonance of the microwave heating sources. Reconstructions of the peaked plasma pressures confined by a levitated dipole incorporate the small axial motion of the dipole (±5 mm), time varying levitation coil currents, eddy currents flowing in the vacuum vessel, constant magnetic flux linking the superconductor, and new flux loops located near the hot plasma in order to closely couple to plasma current and dipole current variations. I. Karim, et al., J. Fusion Energy, 26 (2007) 99.

Neighboring Genes Show Correlated Evolution in Gene Expression

PubMed Central

Ghanbarian, Avazeh T.; Hurst, Laurence D.

2015-01-01

When considering the evolution of a gene’s expression profile, we commonly assume that this is unaffected by its genomic neighborhood. This is, however, in contrast to what we know about the lack of autonomy between neighboring genes in gene expression profiles in extant taxa. Indeed, in all eukaryotic genomes genes of similar expression-profile tend to cluster, reflecting chromatin level dynamics. Does it follow that if a gene increases expression in a particular lineage then the genomic neighbors will also increase in their expression or is gene expression evolution autonomous? To address this here we consider evolution of human gene expression since the human-chimp common ancestor, allowing for both variation in estimation of current expression level and error in Bayesian estimation of the ancestral state. We find that in all tissues and both sexes, the change in gene expression of a focal gene on average predicts the change in gene expression of neighbors. The effect is highly pronounced in the immediate vicinity (<100 kb) but extends much further. Sex-specific expression change is also genomically clustered. As genes increasing their expression in humans tend to avoid nuclear lamina domains and be enriched for the gene activator 5-hydroxymethylcytosine, we conclude that, most probably owing to chromatin level control of gene expression, a change in gene expression of one gene likely affects the expression evolution of neighbors, what we term expression piggybacking, an analog of hitchhiking. PMID:25743543

L-H transition and pedestal studies on MAST

NASA Astrophysics Data System (ADS)

Meyer, H.; De Bock, M. F. M.; Conway, N. J.; Freethy, S. J.; Gibson, K.; Hiratsuka, J.; Kirk, A.; Michael, C. A.; Morgan, T.; Scannell, R.; Naylor, G.; Saarelma, S.; Saveliev, A. N.; Shevchenko, V. F.; Suttrop, W.; Temple, D.; Vann, R. G. L.; MAST, the; NBI Teams

2011-11-01

On MAST studies of the profile evolution of the electron temperature (Te), electron density (ne), radial electric field (Er) as well as novel measurements of the ion temperature (Ti) and toroidal current density (jphi) in the pedestal region allow further insight into the processes forming and defining the pedestal such as the H-mode access conditions and MHD stability. This includes studies of fast evolution of Te, ne and Er with Δt = 0.2 ms time resolution and the evolution of pe and jphi through an edge-localized mode (ELM) cycle. Measurements of the H-mode power threshold, PL-H revealed that about 40% more power is required to access H-mode in 4He than in D and that a change in the Z-position of the X-point can change PL-H significantly in single and double null configurations. The profile measurements in the L-mode phase prior to H-mode suggest that neither the gradient nor the value of the mean Te or Er at the plasma edge play a major role in triggering the L-H transition. After the transitions, first the fluctuations are suppressed, then the Er shear layer and the ne pedestal develops followed by the Te pedestal. In the banana regime at low collisionality (νsstarf) ∇Ti ≈ 0 leading to Ti > Te in the pedestal region with Ti ~ 0.3 keV close to the separatrix. A clear correlation of ∇Ti with νsstarf is observed. The measured jphi (using the motional Stark effect) Te and ne are in broad agreement with the common peeling-ballooning stability picture for ELMs and neoclassical calculations of the bootstrap current. The jphi and ∇pe evolution Δt ≈ 2 ms as well as profiles in discharges with counter current neutral beam injection raise questions with respect to this edge stability picture.

In Situ Missions For Investigation of the Climate, Geology and Evolution of Venus

NASA Astrophysics Data System (ADS)

Grinspoon, David

2017-10-01

In situ Exploration of Venus has been recommended by the Decadal Study of the National Research Council. Many high priority measurements, addressing outstanding first-order, fundamental questions about current processes and evolution of Venus can only be made from in situ platforms such as entry probes, balloons or landers. These include: measuring noble gases and their isotopes to constrain origin and evolution; measuring stable isotopes to constrain the history of water and other volatiles; measuring trace gas profiles and sulfur compounds for chemical cycles and surface-atmosphere interactions, constraining the coupling of radiation, dynamics and chemistry, making visible and infrared descent images, and measuring surface and sub-surface composition. Such measurements will allow us deepen our understanding of the origin and evolution of Venus in the context of the terrestrial planets and extrasolar planets, to determine the level and style of current geological activity and to characterize the divergent climate evolution of Venus and Earth and extend our knowledge of the limits of habitability on hot terrestrial planets.

Current/Pressure Profile Effects on Tearing Mode Stability in DIII-D Hybrid Discharges

NASA Astrophysics Data System (ADS)

Kim, K.; Park, J. M.; Murakami, M.; La Haye, R. J.; Na, Yong-Su

2015-11-01

It is important to understand the onset threshold and the evolution of tearing modes (TMs) for developing a high-performance steady state fusion reactor. As initial and basic comparisons to determine TM onset, the measured plasma profiles (such as temperature, density, rotation) were compared with the calculated current profiles between a pair of discharges with/without n=1 mode based on the database for DIII-D hybrid plasmas. The profiles were not much different, but the details were analyzed to determine their characteristics, especially near the rational surface. The tearing stability index calculated from PEST3, Δ' tends to increase rapidly just before the n=1 mode onset for these cases. The modeled equilibrium with varying pressure or current profiles parametrically based on the reference discharge is reconstructed for checking the onset dependency on Δ' or neoclassical effects such as bootstrap current. Simulations of TMs with the modeled equilibrium using resistive MHD codes will also be presented and compared with experiments to determine the sensibility for predicting TM onset. Work supported by US DOE under DE-FC02-04ER54698 and DE-AC52-07NA27344.

Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa.

PubMed

Khaledi, Ariane; Schniederjans, Monika; Pohl, Sarah; Rainer, Roman; Bodenhofer, Ulrich; Xia, Boyang; Klawonn, Frank; Bruchmann, Sebastian; Preusse, Matthias; Eckweiler, Denitsa; Dötsch, Andreas; Häussler, Susanne

2016-08-01

Emerging resistance to antimicrobials and the lack of new antibiotic drug candidates underscore the need for optimization of current diagnostics and therapies to diminish the evolution and spread of multidrug resistance. As the antibiotic resistance status of a bacterial pathogen is defined by its genome, resistance profiling by applying next-generation sequencing (NGS) technologies may in the future accomplish pathogen identification, prompt initiation of targeted individualized treatment, and the implementation of optimized infection control measures. In this study, qualitative RNA sequencing was used to identify key genetic determinants of antibiotic resistance in 135 clinical Pseudomonas aeruginosa isolates from diverse geographic and infection site origins. By applying transcriptome-wide association studies, adaptive variations associated with resistance to the antibiotic classes fluoroquinolones, aminoglycosides, and β-lactams were identified. Besides potential novel biomarkers with a direct correlation to resistance, global patterns of phenotype-associated gene expression and sequence variations were identified by predictive machine learning approaches. Our research serves to establish genotype-based molecular diagnostic tools for the identification of the current resistance profiles of bacterial pathogens and paves the way for faster diagnostics for more efficient, targeted treatment strategies to also mitigate the future potential for resistance evolution. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa

PubMed Central

Khaledi, Ariane; Schniederjans, Monika; Pohl, Sarah; Rainer, Roman; Bodenhofer, Ulrich; Xia, Boyang; Klawonn, Frank; Bruchmann, Sebastian; Preusse, Matthias; Eckweiler, Denitsa; Dötsch, Andreas

2016-01-01

Emerging resistance to antimicrobials and the lack of new antibiotic drug candidates underscore the need for optimization of current diagnostics and therapies to diminish the evolution and spread of multidrug resistance. As the antibiotic resistance status of a bacterial pathogen is defined by its genome, resistance profiling by applying next-generation sequencing (NGS) technologies may in the future accomplish pathogen identification, prompt initiation of targeted individualized treatment, and the implementation of optimized infection control measures. In this study, qualitative RNA sequencing was used to identify key genetic determinants of antibiotic resistance in 135 clinical Pseudomonas aeruginosa isolates from diverse geographic and infection site origins. By applying transcriptome-wide association studies, adaptive variations associated with resistance to the antibiotic classes fluoroquinolones, aminoglycosides, and β-lactams were identified. Besides potential novel biomarkers with a direct correlation to resistance, global patterns of phenotype-associated gene expression and sequence variations were identified by predictive machine learning approaches. Our research serves to establish genotype-based molecular diagnostic tools for the identification of the current resistance profiles of bacterial pathogens and paves the way for faster diagnostics for more efficient, targeted treatment strategies to also mitigate the future potential for resistance evolution. PMID:27216077

Chemical element transport in stellar evolution models

PubMed Central

Cassisi, Santi

2017-01-01

Stellar evolution computations provide the foundation of several methods applied to study the evolutionary properties of stars and stellar populations, both Galactic and extragalactic. The accuracy of the results obtained with these techniques is linked to the accuracy of the stellar models, and in this context the correct treatment of the transport of chemical elements is crucial. Unfortunately, in many respects calculations of the evolution of the chemical abundance profiles in stars are still affected by sometimes sizable uncertainties. Here, we review the various mechanisms of element transport included in the current generation of stellar evolution calculations, how they are implemented, the free parameters and uncertainties involved, the impact on the models and the observational constraints. PMID:28878972

Chemical element transport in stellar evolution models.

PubMed

Salaris, Maurizio; Cassisi, Santi

2017-08-01

Stellar evolution computations provide the foundation of several methods applied to study the evolutionary properties of stars and stellar populations, both Galactic and extragalactic. The accuracy of the results obtained with these techniques is linked to the accuracy of the stellar models, and in this context the correct treatment of the transport of chemical elements is crucial. Unfortunately, in many respects calculations of the evolution of the chemical abundance profiles in stars are still affected by sometimes sizable uncertainties. Here, we review the various mechanisms of element transport included in the current generation of stellar evolution calculations, how they are implemented, the free parameters and uncertainties involved, the impact on the models and the observational constraints.

Observation and numerical modeling of tidal dune dynamics

NASA Astrophysics Data System (ADS)

Doré, Arnaud; Bonneton, Philippe; Marieu, Vincent; Garlan, Thierry

2018-05-01

Tidal sand dune dynamics is observed for two tidal cycles in the Arcachon tidal inlet, southwest France. An array of instruments is deployed to measure bathymetric and current variations along dune profiles. Based on the measurements, dune crest horizontal and vertical displacements are quantified and show important dynamics in phase with tidal currents. We observed superimposed ripples on the dune stoss side and front, migrating and changing polarity as tidal currents reverse. A 2D RANS numerical model is used to simulate the morphodynamic evolution of a flat non-cohesive sand bed submitted to a tidal current. The model reproduces the bed evolution until a field of sand bedforms is obtained that are comparable with observed superimposed ripples in terms of geometrical dimensions and dynamics. The model is then applied to simulate the dynamics of a field of large sand dunes of similar size as the dunes observed in situ. In both cases, simulation results compare well with measurements qualitatively and quantitatively. This research allows for a better understanding of tidal sand dune and superimposed ripple morphodynamics and opens new perspectives for the use of numerical models to predict their evolution.

Passive MHD Spectroscopy for Enabling Magnetic Reconstructions on Spherical Tokamak Plasmas at General Fusion Inc

NASA Astrophysics Data System (ADS)

O'Shea, Peter; Laberge, Michel; Mossman, Alex; Reynolds, Meritt

2017-10-01

Magnetic reconstructions on lab based plasma injectors at General Fusion relies heavily on edge magnetic (``Bdot'') probes. On plasma experiments built for field compression (PCS) tests, the number and locations of Bdot probes is limited by mechanical constraints. Additional information about the q profiles near the core in our Spector plasmas is obtained using passive MHD spectroscopy. The coaxial helicity injection (CHI) formation process naturally generates hollow current profiles and reversed shear early in each discharge. Central Ohmic heating naturally peaks the current profiles as our plasmas evolve in time, simultaneously reducing the core safety factor, q(0), and reverse shear. As the central, non-monotonic q-profile crosses rational flux surfaces, we observe transient magnetic reconnection events (MRE's) due to the double tearing mode. Modal analysis allows us to infer the q surfaces involved in each burst. The parametric dependence of the timing of MRE's allows us to estimate the continuous time evolution of the core q profile. Combining core MHD spectroscopy with edge magnetic probe measurements greatly enhances our certainty of the overall q profile.

Evolution of selected volatiles in chitosan-coated strawberries ( Fragaria x ananassa ) during refrigerated storage.

PubMed

Almenar, Eva; Hernández-Muñoz, Pilar; Gavara, Rafael

2009-02-11

The effect of chitosan coating on the evolution of several volatile compounds relevant to the strawberry ( Fragaria x ananassa cv. Camarosa) aroma profile has been investigated. Strawberries dipped in chitosan acetate solution at 1 or 1.5% (w/w) and uncoated controls were stored at 10 degrees C for 1 week. Significant differences in aroma profile between coated and uncoated samples were observed. Most importantly, the buildup of the off-flavors acetaldehyde and ethanol was largely delayed in coated berries. With regard to the effect of chitosan on ester evolution, the levels of ethyl butanoate and ethyl hexanoate, important contributors to strawberry aroma related to fruity and sweet notes, were found to be enhanced in coated fruit. Acetate esters also increased during storage but more markedly in uncoated strawberries. These results show the potential of chitosan coatings in maintaining strawberry flavor during storage, something difficult to achieve with current conservation technologies. Moreover, differences in results for different coating concentrations are reported.

Transport modeling of L- and H-mode discharges with LHCD on EAST

NASA Astrophysics Data System (ADS)

Li, M. H.; Ding, B. J.; Imbeaux, F.; Decker, J.; Zhang, X. J.; Kong, E. H.; Zhang, L.; Wei, W.; Shan, J. F.; Liu, F. K.; Wang, M.; Xu, H. D.; Yang, Y.; Peysson, Y.; Basiuk, V.; Artaud, J.-F.; Yuynh, P.; Wan, B. N.

2013-04-01

High-confinement (H-mode) discharges with lower hybrid current drive (LHCD) as the only heating source are obtained on EAST. In this paper, an empirical transport model of mixed Bohm/gyro-Bohm for electron and ion heat transport was first calibrated against a database of 3 L-mode shots on EAST. The electron and ion temperature profiles are well reproduced in the predictive modeling with the calibrated model coupled to the suite of codes CRONOS. CRONOS calculations with experimental profiles are also performed for electron power balance analysis. In addition, the time evolutions of LHCD are calculated by the C3PO/LUKE code involving current diffusion, and the results are compared with experimental observations.

The effects of shockwave profile shape and shock obliquity on spallation in Cu and Ta: kinetic and stress-state effects on damage evolution(u)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gray, George T

2010-12-14

Widespread research over the past five decades has provided a wealth of experimental data and insight concerning shock hardening and the spallation response of materials subjected to square-topped shock-wave loading profiles. Less quantitative data have been gathered on the effect of direct, in-contact, high explosive (HE)-driven Taylor wave (or triangular-wave) loading profile shock loading on the shock hardening, damage evolution, or spallation response of materials. Explosive loading induces an impulse dubbed a 'Taylor Wave'. This is a significantly different loading history than that achieved by a square-topped impulse in terms of both the pulse duration at a fixed peak pressure,more » and a different unloading strain rate from the peak Hugoniot state achieved. The goal of this research is to quantify the influence of shockwave obliquity on the spallation response of copper and tantalum by subjecting plates of each material to HE-driven sweeping detonation-wave loading and quantify both the wave propagation and the post-mortem damage evolution. This talk will summarize our current understanding of damage evolution during sweeping detonation-wave spallation loading in Cu and Ta and show comparisons to modeling simulations. The spallation responses of Cu and Ta are both shown to be critically dependent on the shockwave profile and the stress-state of the shock. Based on variations in the specifics of the shock drive (pulse shape, peak stress, shock obliquity) and sample geometry in Cu and Ta, 'spall strength' varies by over a factor of two and the details of the mechanisms of the damage evolution is seen to vary. Simplistic models of spallation, such as P{sub min} based on 1-D square-top shock data lack the physics to capture the influence of kinetics on damage evolution such as that operative during sweeping detonation loading. Such considerations are important for the development of predictive models of damage evolution and spallation in metals and alloys.« less

Interpretation of scrape-off layer profile evolution and first-wall ion flux statistics on JET using a stochastic framework based on fillamentary motion

NASA Astrophysics Data System (ADS)

Walkden, N. R.; Wynn, A.; Militello, F.; Lipschultz, B.; Matthews, G.; Guillemaut, C.; Harrison, J.; Moulton, D.; Contributors, JET

2017-08-01

This paper presents the use of a novel modelling technique based around intermittent transport due to filament motion, to interpret experimental profile and fluctuation data in the scrape-off layer (SOL) of JET during the onset and evolution of a density profile shoulder. A baseline case is established, prior to shoulder formation, and the stochastic model is shown to be capable of simultaneously matching the time averaged profile measurement as well as the PDF shape and autocorrelation function from the ion-saturation current time series at the outer wall. Aspects of the stochastic model are then varied with the aim of producing a profile shoulder with statistical measurements consistent with experiment. This is achieved through a strong localised reduction in the density sink acting on the filaments within the model. The required reduction of the density sink occurs over a highly localised region with the timescale of the density sink increased by a factor of 25. This alone is found to be insufficient to model the expansion and flattening of the shoulder region as the density increases, which requires additional changes within the stochastic model. An example is found which includes both a reduction in the density sink and filament acceleration and provides a consistent match to the experimental data as the shoulder expands, though the uniqueness of this solution can not be guaranteed. Within the context of the stochastic model, this implies that the localised reduction in the density sink can trigger shoulder formation, but additional physics is required to explain the subsequent evolution of the profile.

Neuroendocrine neoplasms of the lung: Concepts and terminology.

PubMed

Wick, Mark R; Marchevsky, Alberto M

2015-11-01

Neuroendocrine neoplasms of the lung continue to undergo scrutiny, with respect to the diagnostic terminology recommended for them and details of their clinicopathologic profiles. This overview considers the nosological evolution of such lesions and presents current views on classification schemes that pertain to them. Copyright © 2015 Elsevier Inc. All rights reserved.

Modelling of sediment transport and morphological evolution under the combined action of waves and currents

NASA Astrophysics Data System (ADS)

Franz, Guilherme; Delpey, Matthias T.; Brito, David; Pinto, Lígia; Leitão, Paulo; Neves, Ramiro

2017-09-01

Coastal defence structures are often constructed to prevent beach erosion. However, poorly designed structures may cause serious erosion problems in the downdrift direction. Morphological models are useful tools to predict such impacts and assess the efficiency of defence structures for different scenarios. Nevertheless, morphological modelling is still a topic under intense research effort. The processes simulated by a morphological model depend on model complexity. For instance, undertow currents are neglected in coastal area models (2DH), which is a limitation for simulating the evolution of beach profiles for long periods. Model limitations are generally overcome by predefining invariant equilibrium profiles that are allowed to shift offshore or onshore. A more flexible approach is described in this paper, which can be generalised to 3-D models. The present work is based on the coupling of the MOHID modelling system and the SWAN wave model. The impacts of different designs of detached breakwaters and groynes were simulated in a schematic beach configuration following a 2DH approach. The results of bathymetry evolution are in agreement with the patterns found in the literature for several existing structures. The model was also tested in a 3-D test case to simulate the formation of sandbars by undertow currents. The findings of this work confirmed the applicability of the MOHID modelling system to study sediment transport and morphological changes in coastal zones under the combined action of waves and currents. The same modelling methodology was applied to a coastal zone (Costa da Caparica) located at the mouth of a mesotidal estuary (Tagus Estuary, Portugal) to evaluate the hydrodynamics and sediment transport both in calm water conditions and during events of highly energetic waves. The MOHID code is available in the GitHub repository.

Towards Current Profile Control in ITER: Potential Approaches and Research Needs

NASA Astrophysics Data System (ADS)

Schuster, E.; Barton, J. E.; Wehner, W. P.

2014-10-01

Many challenging plasma control problems still need to be addressed in order for the ITER Plasma Control System (PCS) to be able to successfully achieve the ITER project goals. For instance, setting up a suitable toroidal current density profile is key for one possible advanced scenario characterized by noninductive sustainment of the plasma current and steady-state operation. The nonlinearity and high dimensionality exhibited by the plasma demand a model-based current-profile control synthesis procedure that can accommodate this complexity through embedding the known physics within the design. The development of a model capturing the dynamics of the plasma relevant for control design enables not only the design of feedback controllers for regulation or tracking but also the design of optimal feedforward controllers for a systematic model-based approach to scenario planning, the design of state estimators for a reliable real-time reconstruction of the plasma internal profiles based on limited and noisy diagnostics, and the development of a fast predictive simulation code for closed-loop performance evaluation before implementation. Progress towards control-oriented modeling of the current profile evolution and associated control design has been reported following both data-driven and first-principles-driven approaches. An overview of these two approaches will be provided, as well as a discussion on research needs associated with each one of the model applications described above. Supported by the US Department of Energy under DE-SC0001334 and DE-SC0010661.

Simulations of particle and heat fluxes in an ELMy H-mode discharge on EAST using BOUT++ code

NASA Astrophysics Data System (ADS)

Wu, Y. B.; Xia, T. Y.; Zhong, F. C.; Zheng, Z.; Liu, J. B.; team3, EAST

2018-05-01

In order to study the distribution and evolution of the transient particle and heat fluxes during edge-localized mode (ELM) bursts on the Experimental Advanced Superconducting Tokamak (EAST), the BOUT++ six-field two-fluid model is used to simulate the pedestal collapse. The profiles from the EAST H-mode discharge #56129 are used as the initial conditions. Linear analysis shows that the resistive ballooning mode and drift-Alfven wave are two dominant instabilities for the equilibrium, and play important roles in driving ELMs. The evolution of the density profile and the growing process of the heat flux at divertor targets during the burst of ELMs are reproduced. The time evolution of the poloidal structures of T e is well simulated, and the dominant mode in each stage of the ELM crash process is found. The studies show that during the nonlinear phase, the dominant mode is 5, and it changes to 0 when the nonlinear phase goes to saturation after the ELM crash. The time evolution of the radial electron heat flux, ion heat flux, and particle density flux at the outer midplane (OMP) are obtained, and the corresponding transport coefficients D r, χ ir, and χ er reach maximum around 0.3 ∼ 0.5 m2 s‑1 at ΨN = 0.9. The heat fluxes at outer target plates are several times larger than that at inner target plates, which is consistent with the experimental observations. The simulated profiles of ion saturation current density (j s) at the lower outboard (LO) divertor target are compared to those of experiments by Langmuir probes. The profiles near the strike point are similar, and the peak values of j s from simulation are very close to the measurements.

From current-driven to neoclassically driven tearing modes.

PubMed

Reimerdes, H; Sauter, O; Goodman, T; Pochelon, A

2002-03-11

In the TCV tokamak, the m/n = 2/1 island is observed in low-density discharges with central electron-cyclotron current drive. The evolution of its width has two distinct growth phases, one of which can be linked to a "conventional" tearing mode driven unstable by the current profile and the other to a neoclassical tearing mode driven by a perturbation of the bootstrap current. The TCV results provide the first clear observation of such a destabilization mechanism and reconcile the theory of conventional and neoclassical tearing modes, which differ only in the dominant driving term.

Evolution of Cross-Shore Profile Models for Sustainable Coastal Design

NASA Astrophysics Data System (ADS)

Ismail, Nabil; El-Sayed, Mohamed

2014-05-01

Selection and evaluation of coastal structures are correlated with environmental wave and current parameters as well as cross shore profiles. The coupling between the environmental conditions and cross shore profiles necessitates the ability to predict reasonably the cross shore profiles. Results obtained from the validation of a cross-shore profile evolution model, Uniform Beach Sediment Transport-Time-Averaged Cross-Shore (UNIBEST-TC), were examined and further analyzed to reveal the reasons for the discrepancy between the model predictions of the field data at the surf zone of the Duck Beach in North Carolina, USA. The UNIBEST model was developed to predict the main cross shore parameters of wave height, direction, cross shore and long shore currents. However, the results of the model predictions are generally satisfactory for wave height and direction but not satisfactory for the remaining parameters. This research is focused on exploring the discrepancy between the model predictions and the field data of the Duck site, and conducting further analyses to recommend model refinements. The discrepancy is partially attributed due to the fact that the measured values, were taken close to the seabed, while the predicted values are the depth-averaged velocity. Further examination indicated that UNIBEST-TC model runs consider the RMS of the wave height spectrum with a constant gamma-value from the offshore wave spectrum at 8.0m depth. To confirm this argument, a Wavelet Analysis was applied to the time series of wave height and longshore current velocity parameters at the Duck site. The significant wave height ranged between 0.6m and 4.0m while the frequencies ranged between 0.08 to 0.2Hz at 8.0m water depth. Four cases corresponding to events of both high water level and low water level at Duck site were considered in this study. The results show that linear and non-linear interaction between wave height and long-shore current occur over the range of frequencies embracing; the low frequency band of infragravity (0.001- 0.02Hz) waves band and short incident wave band (0.05-0.10Hz). The present results highlight the necessity of incorporating interaction terms between wave - wave and wave- current in the development of cross shore and longshore model formulations. The numerical results confirm previous field observations of nearshore processes that waves in the infragravity range, shear and edge waves, play an important role on near shore hydrodynamics and beach morphology. A prime recommendation of this research work is that the UNIBEST- TC and similar models need to take into effect the interaction between waves, cross shore and longshore currents. Furthermore the models should consider the effects of long waves within the spectrum as well as the generated edge waves. Nevertheless, modeling of this wide range of processes on real beaches needs extensive field data of high spatial and temporal resolutions. Such challenging goal remains to be pursued to enhance state of art prediction of the cross-shore evolution profiles. REFERENCES Addison, P.S. (2002). "The Illustrated Wavelet Transform Handbook, Introductory Theory and Applications in Science", 349 p., Bristol, UK, Institute of Physics Publishing. Elsayed, M.A.K. (2006). "Application of a Cross-Shore Profile Evolution Model to Barred Beaches", Journal of Coastal Research, 22(3), 645-663. Elsayed, M.A.K. (2007). "Non-linear Wave-Wave Interactions in a Mistral Event". Journal of Coastal Research, 23(5), 1318-1323. Ismail, N. M., and Wiegel, R. L. (1983). "Effect of Opposing Waves on Momentum Jets Spreading Rate", Journal of Waterway, Port, Coastal and Ocean Division, ASCE, Vol.109, No.4, 465-483. Ismail, N.M. (1984). "Wave-Current Models for the Design of Marine Structures", Journal of Waterway, Port, Coastal and Ocean Engineering, ASCE, Vol. 110, No. 4, 432-446. Ismail, N.M. (2007). "Discussion of Reynolds Stresses and Velocity Distributions in a Wave-Current Coexisting Environment", Journal of Waterway, Port, Coastal and Ocean Engineering, ASCE, Vol. 133, No. 2, 168-169. Ismail, N. and J.W. Williams. ( 2013). Sea-Level Rise Implications for Coastal Protection from Southern Mediterranean to the U.S.A. Atlantic Coast, EGU,2013-13464, European Geosciences Union, General Assembly 2013,Vienna, Austria, 07 - 12 April.

Simulation of profile evolution from ramp-up to ramp-down and optimization of tokamak plasma termination with the RAPTOR code

NASA Astrophysics Data System (ADS)

Teplukhina, A. A.; Sauter, O.; Felici, F.; Merle, A.; Kim, D.; the TCV Team; the ASDEX Upgrade Team; the EUROfusion MST1 Team

2017-12-01

The present work demonstrates the capabilities of the transport code RAPTOR as a fast and reliable simulator of plasma profiles for the entire plasma discharge, i.e. from ramp-up to ramp-down. This code focuses, at this stage, on the simulation of electron temperature and poloidal flux profiles using prescribed equilibrium and some kinetic profiles. In this work we extend the RAPTOR transport model to include a time-varying plasma equilibrium geometry and verify the changes via comparison with ATSRA code simulations. In addition a new ad hoc transport model based on constant gradients and suitable for simulations of L-H and H-L mode transitions has been incorporated into the RAPTOR code and validated with rapid simulations of the time evolution of the safety factor and the electron temperature over the entire AUG and TCV discharges. An optimization procedure for the plasma termination phase has also been developed during this work. We define the goal of the optimization as ramping down the plasma current as fast as possible while avoiding any disruptions caused by reaching physical or technical limits. Our numerical study of this problem shows that a fast decrease of plasma elongation during current ramp-down can help in reducing plasma internal inductance. An early transition from H- to L-mode allows us to reduce the drop in poloidal beta, which is also important for plasma MHD stability and control. This work shows how these complex nonlinear interactions can be optimized automatically using relevant cost functions and constraints. Preliminary experimental results for TCV are demonstrated.

Turbidity Currents With Equilibrium Basal Driving Layers: A Mechanism for Long Runout

NASA Astrophysics Data System (ADS)

Luchi, R.; Balachandar, S.; Seminara, G.; Parker, G.

2018-02-01

Turbidity currents run out over 100 km in lakes and reservoirs, and over 1,000 km in the ocean. They do so without dissipating themselves via excess entrainment of ambient water. Existing layer-averaged formulations cannot capture this. We use a numerical model to describe the temporal evolution of a turbidity current toward steady state under condition of zero net sediment flux at the bed. The flow self-partitions itself into two layers. The lower "driving layer" approaches an invariant flow thickness, velocity profile, and suspended sediment concentration profile that sequesters nearly all of the suspended sediment. This layer can continue indefinitely at steady state over a constant bed slope. The upper "driven layer" contains a small fraction of the suspended sediment. The devolution of the flow into these two layers likely allows the driving layer to run out long distances.

Nonlinear Simulation of DIII-D Plasma and Poloidal Systems Using DINA and Simulink

NASA Astrophysics Data System (ADS)

Walker, M. L.; Leuer, J. A.; Deranian, R. D.; Humphreys, D. A.; Khayrutdinov, R. R.

2002-11-01

Hardware-in-the-loop simulation capability was developed previously for poloidal shape control testing using Matlab Simulink [1]. This has been upgraded by replacing a linearized plasma model with the DINA nonlinear plasma evolution code [2]. In addition to its use for shape control studies, this new capability will allow study of current profile control using the DINA model of electron cyclotron current drive (ECCD) and current profile information soon to be available from the Plasma Control System (PCS) real time EFIT [3] calculation. We describe the incorporation of DINA into the Simulink DIII-D tokamak systems model and results of validating this combined model against DIII-D data. \\vspace0.1em [1] J.A. Leuer, et al., 18th IEEE/NPSS SOFE (1999), p. 531. [2] R.R. Khayrutdinov, V.E. Lukash, J. Comput. Phys. 109, 193 (1993). [3] J.R. Ferron, et al., Nucl. Fusion 38, 1055 (1988).

Recent RF Experiments and Application of RF Waves to Real-Time Control of Safety Factor Profile in JT-60U

NASA Astrophysics Data System (ADS)

Suzuki, T.; Isayama, A.; Ide, S.; Fujita, T.; Oikawa, T.; Sakata, S.; Sueoka, M.; Hosoyama, H.; JT-60 Team

2005-09-01

Two topics of applications of RF waves to current profile control in JT-60U are presented; application of lower-hybrid (LH) waves to safety factor profile control and electron cyclotron (EC) waves to neo-classical tearing mode (NTM) control. A real-time control system of safety factor (q) profile was developed. This system, for the first time, enables 1) real time evaluation of q profile using local magnetic pitch angle measurement by motional Stark effect (MSE) diagnostic and 2) control of current drive (CD) location (ρCD) by controlling the parallel refractive index N∥ of LH waves through control of phase difference (Δφ) of LH waves between multi-junction launcher modules. The method for real-time q profile evaluation was newly developed, without time-consuming reconstruction of equilibrium, so that the method requires less computational time. Safety factor profile by the real-time calculation agrees well with that by equilibrium reconstruction with MSE. The control system controls ρCD through Δφ in such a way to decrease the largest residual between the real-time evaluated q profile q(r) and its reference profile qref(r). The real-time control system was applied to a positive shear plasma (q(0)˜1). The reference q profile was set to monotonic positive shear profile having qref(0)=1.3. The real-time q profile approached to the qref(r) during application of real-time control, and was sustained for 3s, which was limited by the duration of the injected LH power. Temporal evolution of current profile was consistent with relaxation of inductive electric field induced by theoretical LH driven current. An m/n=3/2 NTM that appeared at βN˜3 was completely stabilized by ECCD applied to a fully-developed NTM. Precise ECCD at NTM island was essential for the stabilization. ECCD that was applied to resonant rational surface (q=3/2) before an NTM onset suppressed appearance of NTM. In order to keep NTM intensity below a level, ECCD before the mode onset was more effective than that after mode saturation.

UML Profiles for Design Decisions and Non-Functional Requirements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Liming; Gorton, Ian

2007-06-30

A software architecture is composed of a collection of design decisions. Each design decision helps or hinders certain Non-Functional Requirements (NFR). Current software architecture views focus on expressing components and connectors in the system. Design decisions and their relationships with non-functional requirements are often captured in separate design documentation, not explicitly expressed in any views. This disassociation makes architecture comprehension and architecture evolution harder. In this paper, we propose a UML profile for modeling design decisions and an associated UML profile for modeling non-functional requirements in a generic way. The two UML profiles treat design decisions and nonfunctional requirements asmore » first-class elements. Modeled design decisions always refer to existing architectural elements and thus maintain traceability between the two. We provide a mechanism for checking consistency over this traceability. An exemplar is given as« less

Transport simulation of EAST long-pulse H-mode discharge with integrated modeling

NASA Astrophysics Data System (ADS)

Wu, M. Q.; Li, G. Q.; Chen, J. L.; Du, H. F.; Gao, X.; Ren, Q. L.; Li, K.; Chan, Vincent; Pan, C. K.; Ding, S. Y.; Jian, X.; Zhu, X.; Lian, H.; Qian, J. P.; Gong, X. Z.; Zang, Q.; Duan, Y. M.; Liu, H. Q.; Lyu, B.

2018-04-01

In the 2017 EAST experimental campaign, a steady-state long-pulse H-mode discharge lasting longer than 100 s has been obtained using only radio frequency heating and current drive, and the confinement quality is slightly better than standard H-mode, H98y2 ~ 1.1, with stationary peaked electron temperature profiles. Integrated modeling of one long-pulse H-mode discharge in the 2016 EAST experimental campaign has been performed with equilibrium code EFIT, and transport codes TGYRO and ONETWO under integrated modeling framework OMFIT. The plasma current is fully-noninductively driven with a combination of ~2.2 MW LHW, ~0.3 MW ECH and ~1.1 MW ICRF. Time evolution of the predicted electron and ion temperature profiles through integrated modeling agree closely with that from measurements. The plasma current (I p ~ 0.45 MA) and electron density are kept constantly. A steady-state is achieved using integrated modeling, and the bootstrap current fraction is ~28%, the RF drive current fraction is ~72%. The predicted current density profile matches the experimental one well. Analysis shows that electron cyclotron heating (ECH) makes large contribution to the plasma confinement when heating in the core region while heating in large radius does smaller improvement, also a more peaked LHW driven current profile is got when heating in the core. Linear analysis shows that the high-k modes instability (electron temperature gradient driven modes) is suppressed in the core region where exists weak electron internal transport barriers. The trapped electron modes dominates in the low-k region, which is mainly responsible for driving the electron energy flux. It is found that the ECH heating effect is very local and not the main cause to sustained the good confinement, the peaked current density profile has the most important effect on plasma confinement improvement. Transport analysis of the long-pulse H-mode experiments on EAST will be helpful to build future experiments.

Electron Temperature Evolution During Local Helicity Injection on the Pegasus Toroidal Experiment

NASA Astrophysics Data System (ADS)

Schlossberg, D. J.; Barr, J. L.; Bodner, G. M.; Bongard, M. W.; Fonck, R. J.; Perry, J. M.; Reusch, J. A.; Rodriguez Sanchez, C.

2016-10-01

Understanding the electron temperature (Te) evolution during local helicity injection (LHI) is critical for scaling up this non-solenoidal startup technique to MA-class devices. The first comprehensive Te measurements during LHI reveal centrally-peaked profiles with Te > 100 eV for plasma current Ip > 120 kA, toroidal field 0.15 T, and electron density ne 1019 m-3. Te rises and is sustained from just after magnetic relaxation through the plasma decoupling from edge-localized injectors. Results are presented for two injector edge locations: outboard midplane and inboard divertor. Outboard midplane injection couples LHI with inductive drive from poloidal field ramps and radial compression during inward plasma growth. Comparisons of Te at different LHI-to-inductive drive ratios show some profile flattening for higher LHI drive fraction. The latter, constant-shape discharges were necessarily lower performance, with Ip 50 kA and reduced Te , max. Inboard divertor injection achieves higher Ip using minimal inductive drive and thus isolates effects of LHI drive on Te. Initial results in this configuration show Te rising rapidly at the injector location as the discharge grows, settling to a roughly flat profile 100 eV. Thus far, both scenarios provide relatively stable discharges with moderate ne and high-Te, suitable for coupling to auxiliary current drive. Detailed studies of confinement dynamics and discharge optimization are planned for the near future. Work supported by US DOE Grant DE-FG02-96ER54375.

Measured and simulated electron thermal transport in the Madisom symmetric torus reversed field pinch

NASA Astrophysics Data System (ADS)

Rodrigue Mbombo, Brice

New high time resolution measurements of the evolution of the electron temperature profile through a sawtooth event in high current reversed-field pinch (RFP) discharges in the Madison Symmetric Torus (MST) have been made using the enhanced capabilities of the multipoint, multi-pulse Thomson scattering system. Using this and other data, the electron thermal diffusion chie determined and is found to vary by orders of magnitude over the course of the sawtooth cycle. This experimental data is compared directly to simulations run at experimentally relevant parameters. This includes zero beta, single fluid, nonlinear, resistive magnetohydrodynamic (MHD) simulations run with the aspect ratio, resistivity profile, and Lundquist number (S ˜ 4 x 106) of high current RFP discharges in MST. These simulations display MHD activity and sawtooth like behavior similar to that observed in the MST. This includes both the sawtooth period and the duration of the sawtooth crash. The radial shape of the magnetic mode amplitudes, scaled to match edge measurements made in MST, are then used to compute the expected level of thermal diffusion due to parallel losses along diffusing magnetic field lines, chiMD = upsilon∥Dmag. The evolution of the Dmag profile was determined for over 20 sawteeth so that the ensemble averaged evolution could be compared to the sawtooth ensembled data from MST. The resulting comparison to the measured chi e shows that chiMD is larger than chi e at most times. However, if electrons are trapped in a magnetic well, they cannot carry energy along the diffusing magnetic field lines, reducing the thermal transport. Accounting for trapped particles brings chi MD to within uncertainty of chie in the mid radius at most times throughout the sawtooth cycle. In the core, the measured chie is greater than chi MD leading up to and including the sawtooth crash, suggesting other transport mechanisms are important at these times. Additionally, in a simulation including pressure evolution, a striking agreement is found between the temperature fluctuations seen in the simulation and those previously measured in MST. This work supported by the US DOE and NSF.

Comparison of the analytical and simulation results of the equilibrium beam profile

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Z. J.; Zhu Shaoping; Cao, L. H.

2007-10-15

The evolution of high current electron beams in dense plasmas has been investigated by using two-dimensional particle-in-cell (PIC) simulations with immobile ions. It is shown that electron beams are split into many filaments at the beginning due to the Weibel instability, and then different filamentation beams attract each other and coalesce. The profile of the filaments can be described by formulas. Hammer et al. [Phys. Fluids 13, 1831 (1970)] developed a self-consistent relativistic electron beam model that allows the propagation of relativistic electron fluxes in excess of the Alfven-Lawson critical-current limit for a fully neutralized beam. The equilibrium solution hasmore » been observed in the simulation results, but the electron distribution function assumed by Hammer et al. is different from the simulation results.« less

ADCP measurements of gravity currents in the Chicago River, Illinois

USGS Publications Warehouse

Garcia, C.M.; Oberg, K.; Garcia, M.H.

2007-01-01

A unique set of observations of stratified flow phenomena in the Chicago River was made using an upward-looking acoustic Doppler current profiler (ADCP) during the period November 20, 2003 to February 1, 2004. Water density differences between the Chicago River and its North Branch (NB) seem to be responsible for the development of gravity currents. With the objective of characterizing the occurrence, frequency, and evolution of such currents, the ADCP was configured to continuously collect high-resolution water velocity and echo intensity profiles in the Chicago River at Columbus Drive. During the observation period, 28 gravity current events were identified, lasting a total of 77% of the time. Sixteen of these events were generated by underflows from the NB and 12 of these events were generated by overflows from the NB. On average, the duration of the underflow and overflow events was 52.3 and 42.1 h, respectively. A detailed analysis of one underflow event, which started on January 7, 2004, and lasted about 65h, was performed. This is the first time that ADCP technology has been used to continuously monitor gravity currents in a river. ?? 2007 ASCE.

Development of Integrated Magnetic and Kinetic Control-oriented Transport Model for q-profile Response Prediction in EAST Discharges

NASA Astrophysics Data System (ADS)

Wang, Hexiang; Schuster, Eugenio; Rafiq, Tariq; Kritz, Arnold; Ding, Siye

2016-10-01

Extensive research has been conducted to find high-performance operating scenarios characterized by high fusion gain, good confinement, plasma stability and possible steady-state operation. A key plasma property that is related to both the stability and performance of these advanced plasma scenarios is the safety factor profile. A key component of the EAST research program is the exploration of non-inductively driven steady-state plasmas with the recently upgraded heating and current drive capabilities that include lower hybrid current drive and neutral beam injection. Anticipating the need for tight regulation of the safety factor profile in these plasma scenarios, a first-principles-driven (FPD)control-oriented model is proposed to describe the safety factor profile evolution in EAST in response to the different actuators. The TRANSP simulation code is employed to tailor the FPD model to the EAST tokamak geometry and to convert it into a form suitable for control design. The FPD control-oriented model's prediction capabilities are demonstrated by comparing predictions with experimental data from EAST. Supported by the US DOE under DE-SC0010537,DE-FG02-92ER54141 and DE-SC0013977.

MHD and resonant instabilities in JT-60SA during current ramp-up with off-axis N-NB injection

NASA Astrophysics Data System (ADS)

Bierwage, A.; Toma, M.; Shinohara, K.

2017-12-01

The excitation of magnetohydrodynamic (MHD) and resonant instabilities and their effect on the plasma profiles during the current ramp-up phase of a beam-driven JT-60SA tokamak plasma is studied using the MHD-PIC hybrid code MEGA. In the simple scenario considered, the plasma is only driven by one negative-ion-based neutral beam, depositing 500 keV deuterons at 5 MW power off-axis at about mid-radius. The beam injection starts half-way in the ramp-up phase. Within 1 s, the beam-driven plasma current and fast ion pressure produce a configuration that is strongly unstable to rapidly growing MHD and resonant modes. Using MEGA, modes with low toroidal mode numbers in the range n = 1-4 are examined in detail and shown to cause substantial changes in the plasma profiles. The necessity to develop reduced models and incorporate the effects of such instabilities in integrated codes used to simulate the evolution of entire plasma discharges is discussed.

Steady state scenario development with elevated minimum safety factor on DIII-D

DOE PAGES

Holcomb, Christopher T.; Ferron, John R.; Luce, Timothy C.; ...

2014-08-15

On DIII-D, a high β scenario with minimum safety factor (q min) near 1.4 has been optimized with new tools and shown to be a favourable candidate for long pulse or steady state operation in future devices. Furthermore, the new capability to redirect up to 5 MW of neutral beam injection (NBI) from on- to off-axis improves the ability to sustain elevated q min with a less peaked pressure profile. The observed changes increase the ideal magnetohydrodynamics (MHD) n = 1 mode β N limit thus providing a path forward for increasing the noninductive current drive fraction by operating atmore » high β N. Quasi-stationary discharges free of tearing modes have been sustained at βN = 3.5 and β T = 3.6% for two current profile diffusion timescales (about 3 s) limited by neutral beam duration. The discharge performance has normalized fusion performance expected to give fusion gain Q ≈ 5 in a device the size of ITER. Analysis of the poloidal flux evolution and current drive balance show that the loop voltage profile is almost relaxed even with 25% of the current driven inductively, and q min remains elevated near 1.4. Our observations increase confidence that the current profile will not evolve to one unstable to a tearing mode. In preliminary tests a divertor heat flux reduction technique based on producing a radiating mantle with neon injection appears compatible with this operating scenario. 0D model extrapolations suggest it may be possible to push this scenario up to 100% noninductive current drive by raising β N. Similar discharges with q min = 1.5–2 were susceptible to tearing modes and off-axis fishbones, and with q min > 2 lower normalized global energy confinement time is observed.« less

Dynamics of electrical double layer formation in room-temperature ionic liquids under constant-current charging conditions

NASA Astrophysics Data System (ADS)

Jiang, Xikai; Huang, Jingsong; Zhao, Hui; Sumpter, Bobby G.; Qiao, Rui

2014-07-01

We report detailed simulation results on the formation dynamics of an electrical double layer (EDL) inside an electrochemical cell featuring room-temperature ionic liquids (RTILs) enclosed between two planar electrodes. Under relatively small charging currents, the evolution of cell potential from molecular dynamics (MD) simulations during charging can be suitably predicted by the Landau-Ginzburg-type continuum model proposed recently (Bazant et al 2011 Phys. Rev. Lett. 106 046102). Under very large charging currents, the cell potential from MD simulations shows pronounced oscillation during the initial stage of charging, a feature not captured by the continuum model. Such oscillation originates from the sequential growth of the ionic space charge layers near the electrode surface. This allows the evolution of EDLs in RTILs with time, an atomistic process difficult to visualize experimentally, to be studied by analyzing the cell potential under constant-current charging conditions. While the continuum model cannot predict the potential oscillation under such far-from-equilibrium charging conditions, it can nevertheless qualitatively capture the growth of cell potential during the later stage of charging. Improving the continuum model by introducing frequency-dependent dielectric constant and density-dependent ion diffusion coefficients may help to further extend the applicability of the model. The evolution of ion density profiles is also compared between the MD and the continuum model, showing good agreement.

Dynamics of electrical double layer formation in room-temperature ionic liquids under constant-current charging conditions.

PubMed

Jiang, Xikai; Huang, Jingsong; Zhao, Hui; Sumpter, Bobby G; Qiao, Rui

2014-07-16

We report detailed simulation results on the formation dynamics of an electrical double layer (EDL) inside an electrochemical cell featuring room-temperature ionic liquids (RTILs) enclosed between two planar electrodes. Under relatively small charging currents, the evolution of cell potential from molecular dynamics (MD) simulations during charging can be suitably predicted by the Landau-Ginzburg-type continuum model proposed recently (Bazant et al 2011 Phys. Rev. Lett. 106 046102). Under very large charging currents, the cell potential from MD simulations shows pronounced oscillation during the initial stage of charging, a feature not captured by the continuum model. Such oscillation originates from the sequential growth of the ionic space charge layers near the electrode surface. This allows the evolution of EDLs in RTILs with time, an atomistic process difficult to visualize experimentally, to be studied by analyzing the cell potential under constant-current charging conditions. While the continuum model cannot predict the potential oscillation under such far-from-equilibrium charging conditions, it can nevertheless qualitatively capture the growth of cell potential during the later stage of charging. Improving the continuum model by introducing frequency-dependent dielectric constant and density-dependent ion diffusion coefficients may help to further extend the applicability of the model. The evolution of ion density profiles is also compared between the MD and the continuum model, showing good agreement.

Evolution of Edge Pedestal Profiles Between ELMs

NASA Astrophysics Data System (ADS)

Floyd, J. P.; Stacey, W. M.; Groebner, R. J.

2012-10-01

The measured edge profile evolution in DIII-D discharges is analyzed in terms of the implied thermal diffusivities, ion diffusion coefficients and pinch velocities, using the momentum-balance methodology of Ref. [1], extended to take into account ion orbit loss and X-point loss. The evolution of the density, temperature, rotation and radial electric field profiles in the edge pedestal between edge localized modes (ELMs) provides information of these diffusive and non-diffusive transport processes in the pedestal of H-mode plasmas. This methodology is incorporated in the GTEDGE code developed for DIII-D data interpretation. Using a smaller integration time for the charge exchange recombination measurements than in Ref. [1] allows a more detailed examination of the time evolution of the ion temperature and rotation profiles. 6pt [1] W.M. Stacey and R.J. Groebner, Nucl. Fusion 51, 063024 (2011).

Critical Decay Index at the Onset of Solar Eruptions

NASA Astrophysics Data System (ADS)

Zuccarello, F. P.; Aulanier, G.; Gilchrist, S. A.

2015-12-01

Magnetic flux ropes are topological structures consisting of twisted magnetic field lines that globally wrap around an axis. The torus instability model predicts that a magnetic flux rope of major radius R undergoes an eruption when its axis reaches a location where the decay index -d({ln}{B}{ex})/d({ln}R) of the ambient magnetic field Bex is larger than a critical value. In the current-wire model, the critical value depends on the thickness and time evolution of the current channel. We use magnetohydrodynamic simulations to investigate whether the critical value of the decay index at the onset of the eruption is affected by the magnetic flux rope’s internal current profile and/or by the particular pre-eruptive photospheric dynamics. The evolution of an asymmetric, bipolar active region is driven by applying different classes of photospheric motions. We find that the critical value of the decay index at the onset of the eruption is not significantly affected by either the pre-erupitve photospheric evolution of the active region or the resulting different magnetic flux ropes. As in the case of the current-wire model, we find that there is a “critical range” [1.3-1.5], rather than a “critical value” for the onset of the torus instability. This range is in good agreement with the predictions of the current-wire model, despite the inclusion of line-tying effects and the occurrence of tether-cutting magnetic reconnection.

Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Drug Resistance

NASA Astrophysics Data System (ADS)

De Jong, Maxwell G.; Wood, Kevin B.

2018-06-01

Spatial heterogeneity plays an important role in the evolution of drug resistance. While recent studies have indicated that spatial gradients of selection pressure can accelerate resistance evolution, much less is known about evolution in more complex spatial profiles. Here we use a stochastic toy model of drug resistance to investigate how different spatial profiles of selection pressure impact the time to fixation of a resistant allele. Using mean first passage time calculations, we show that spatial heterogeneity accelerates resistance evolution when the rate of spatial migration is sufficiently large relative to mutation but slows fixation for small migration rates. Interestingly, there exists an intermediate regime—characterized by comparable rates of migration and mutation—in which the rate of fixation can be either accelerated or decelerated depending on the spatial profile, even when spatially averaged selection pressure remains constant. Finally, we demonstrate that optimal tuning of the spatial profile can dramatically slow the spread and fixation of resistant subpopulations, even in the absence of a fitness cost for resistance. Our results may lay the groundwork for optimized, spatially resolved drug dosing strategies for mitigating the effects of drug resistance.

Stratigraphic evolution of Chandeleur Islands, Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suter, J.R.; Penland, S.; Williams, S.J.

1988-09-01

Analyses of over 3000 km of high-resolution seismic profiles, supplemented by vibracores and soil borings, illustrate the evolution of the Chandeleur Islands through transgressive processes associated with the abandonment of the St. Bernard complex of the Mississippi delta some 1500 years ago. Historical maps show that the system has been eroding, migrating landward, and losing area for the last 100 years. At current rates, the subaerial integrity of the islands will be terminated in about 200 years. Hurricane impacts accelerate erosion and segment the islands, followed by limited recovery during fair weather periods. Relative sea level rise from both subsidencemore » and possible eustatic factors contributes to the loss of island area.« less

Transverse Mode Dynamics of VCSELs Undergoing Current Modulation

NASA Technical Reports Server (NTRS)

Goorjian, Peter M.; Ning, C. Z.; Agrawal, Govind

2000-01-01

Transverse mode dynamics of a 20-micron-diameter vertical-cavity surface-emitting laser (VCSEL) undergoing gain switching by deep current modulation is studied numerically. The direct current (dc) level is set slightly below threshold and is modulated by a large alternating current (ac). The resulting optical pulse train and transverse-mode patterns are obtained numerically. The ac frequency is varied from 2.5 GHz to 10 GHz, and the ac amplitude is varied from one-half to four times that of the dc level. At high modulation frequencies, a regular pulse train is not generated unless the ac amplitude is large enough. At all modulation frequencies, the transverse spatial profile switches from single-mode to multiple-mode pattern as the ac pumping level is increased. Optical pulse widths vary in the range 5-30 ps. with the pulse width decreasing when either the frequency is increased or the ac amplitude is decreased. The numerical modeling uses an approximation form of the semiconductor Maxwell-Bloch equations. Temporal evolution of the spatial profiles of the laser (and of carrier density) is determined without any assumptions about the type or number of modes. Keywords: VCSELs, current modulation, gain switching, transverse mode dynamics, computational modeling

Supercurrent survival under a Rosen-Zener quench of hard-core bosons.

PubMed

Klich, I; Lannert, C; Refael, G

2007-11-16

We study the survival of supercurrents in a system of impenetrable bosons on a lattice, subject to a quantum quench from its critical superfluid phase to an insulating phase. We show that the evolution of the current when the quench follows a Rosen-Zener profile is exactly solvable. This allows us to analyze a quench of arbitrary rate, from a sudden destruction of the superfluid to a slow opening of a gap. The decay and oscillations of the current are analytically derived and studied numerically along with the momentum distribution after the quench. In the case of small supercurrent boosts nu, we find that the current surviving at long times is proportional to nu3.

The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery

PubMed Central

Metz, Thomas O.; Zhang, Qibin; Page, Jason S.; Shen, Yufeng; Callister, Stephen J.; Jacobs, Jon M.; Smith, Richard D.

2008-01-01

SUMMARY The future utility of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discover will be discussed, beginning with a brief description of the evolution of metabolomics and the utilization of the three most popular analytical platforms in such studies: NMR, GC-MS, and LC-MS. Emphasis is placed on recent developments in high-efficiency LC separations, sensitive electrospray ionization approaches, and the benefits to incorporating both in LC-MS-based approaches. The advantages and disadvantages of various quantitative approaches are reviewed, followed by the current LC-MS-based tools available for candidate biomarker characterization and identification. Finally, a brief prediction on the future path of LC-MS-based methods in metabolic profiling and metabolomic studies is given. PMID:19177179

An investigation of the environment surrounding supercell thunderstorms using wind profiler data

NASA Astrophysics Data System (ADS)

Thornhill, Kenneth Lee, II

1998-12-01

One of the cornerstones of severe thunderstorm research has been quantifying the relationship between the ambient vertical wind profile and the environment of a supercell thunderstorm. Continual refinement of that understanding will lead to the ability to distinguish between tornadic and non-tornadic supercells. Recently, studies have begun to show the importance of the mid-level winds (about 3-6 km), in addition to the normally analyzed 0-3 km inflow layer winds. The 32 wind profilers of the NOAA Profiler Network provide a new source of wind field data that is of higher temporal and spatial resolution that the normally used radiosonde soundings. Continuous raw wind field data (u, v, and w) is now available every 6 minutes, with a quality controlled hourly averaged wind field data set also available. In this work, a 6-minute quality control algorithm is presented and utilized. This 6-minute quality controlled wind data can be used to calculate predictive parameters such as storm relative environmental helicity, Bulk Richardson Number shear, and positive mean shear, indices that are normally calculated only for the inflow layer. In addition, the time series evolution of the mean midlevel winds and the mean vertical winds can also be examined. This present work concentrates on the 1994 and 1995 spring tornado seasons in the central plains of the United States. Combining the data from the NOAA Profiler Network with the data collected from the Verification of the Origins of Rotation in Tornadoes Experiment, the time series evolution of the several indices mentioned above are examined for the winds above the inflow layer in an attempt to add to the current understanding of the relationship between the vertical wind profile and the environment of tornadic and non-tornadic supercell thunderstorms.

Stellar Populations and Radial Migrations in Virgo Disk Galaxies

NASA Astrophysics Data System (ADS)

Roediger, Joel C.; Courteau, Stéphane; Sánchez-Blázquez, Patricia; McDonald, Michael

2012-10-01

We present new stellar age profiles, derived from well-resolved optical and near-infrared images of 64 Virgo cluster disk galaxies, whose analysis poses a challenge for current disk galaxy formation models. Our ability to break the age-metallicity degeneracy and the significant size of our sample represent key improvements over complementary studies of field disk galaxies. Our results can be summarized as follows: first, and contrary to observations of disk galaxies in the field, these cluster galaxies are distributed almost equally amongst the three main types of disk galaxy luminosity profiles (I/II/III), indicating that the formation and/or survival of Type II breaks is suppressed within the cluster environment. Second, we find examples of statistically significant inversions ("U-shapes") in the age profiles of all three disk galaxy types, reminiscent of predictions from high-resolution simulations of classically truncated Type II disks in the field. These features characterize the age profiles for only about a third (<=36%) of each disk galaxy type in our sample. An even smaller fraction of cluster disks (~11% of the total sample) exhibit age profiles that decrease outward (i.e., negative age gradients). Instead, flat and/or positive age gradients prevail (>=50%) within our Type I, II, and III subsamples. These observations thus suggest that while stellar migrations and inside-out growth can play a significant role in the evolution of all disk galaxy types, other factors contributing to the evolution of galaxies can overwhelm the predicted signatures of these processes. We interpret our observations through a scenario whereby Virgo cluster disk galaxies formed initially like their brethren in the field but which, upon falling into the cluster, were transformed into their present state through external processes linked to the environment (e.g., ram-pressure stripping and harassment). Current disk galaxy formation models, which have largely focused on field galaxies, fail to reproduce these results, thus calling for adequate hydrodynamical simulations of dense galaxy environments if we are to understand cluster disks. The current paper highlights numerous constraints for such simulations. In the Appendix, we confirm the claim by Erwin et al. that Type II breaks are absent in Virgo cluster S0s and discuss the detection of Type III breaks in such galaxies.

The need for New In Situ Measurements to Understand the Climate, Geology and Evolution of Venus.

NASA Astrophysics Data System (ADS)

Grinspoon, D. H.

2017-12-01

Many measurements needed to address outstanding questions about current processes and evolution of Venus can only be made from in situ platforms such as entry probes, balloons or landers. Among these are precise determination of the value and altitude dependence of the deuterium-to-hydrogen ratio, an important tracer of water history which, while clearly greatly elevated compared to the terrestrial ratio, is still unknown within a large range of uncertainty and appears, based on Venus Express results, to display an enigmatic altitude dependence. Rare gas abundances and isotopes provide clues to volatile sources and histories of outgassing and exospheric escape. Modern mass spectrometry at Venus would yield abundances of the eight stable xenon isotopes, bulk abundances of krypton, and isotopes of neon. Altitude profiles of sulfur-containing chemical species would illuminate global geochemical cycles, including cloud formation, outgassing rates and surface-atmosphere interactions. The altitude profile of wind speeds and radiation fluxes, interpreted in light of the Venus Express and Akatsuki data, would enrich understanding of the global circulation and climate dynamics of Venus. Descent and surface images of carefully chosen locations would lend ground truth to interpretations of the near-global Magellan data sets and provide context for global remote sensing data obtained by future orbiter missions. Landed instruments would provide refinement and calibration for chemical abundance measurements by historical missions as well as direct mineralogical measurements of Venusian surface and subsurface rocks. In concert with atmospheric measurements these would greatly constrain geologic history as well as the nature of surface-atmosphere interactions. Such a suite of measurements will deepen our understanding of the origin and evolution of Venus in the context of Solar System and extrasolar terrestrial planets, determine the level and style of current geological activity, characterize the divergent climate evolution of Venus and Earth and extend our knowledge of the limits of habitability on hot terrestrial planets.

Genetics of climate change adaptation.

PubMed

Franks, Steven J; Hoffmann, Ary A

2012-01-01

The rapid rate of current global climate change is having strong effects on many species and, at least in some cases, is driving evolution, particularly when changes in conditions alter patterns of selection. Climate change thus provides an opportunity for the study of the genetic basis of adaptation. Such studies include a variety of observational and experimental approaches, such as sampling across clines, artificial evolution experiments, and resurrection studies. These approaches can be combined with a number of techniques in genetics and genomics, including association and mapping analyses, genome scans, and transcription profiling. Recent research has revealed a number of candidate genes potentially involved in climate change adaptation and has also illustrated that genetic regulatory networks and epigenetic effects may be particularly relevant for evolution driven by climate change. Although genetic and genomic data are rapidly accumulating, we still have much to learn about the genetic architecture of climate change adaptation.

Extended MHD Modeling of Tearing-Driven Magnetic Relaxation

NASA Astrophysics Data System (ADS)

Sauppe, Joshua

2016-10-01

Driven plasma pinch configurations are characterized by the gradual accumulation and episodic release of free energy in discrete relaxation events. The hallmark of this relaxation in a reversed-field pinch (RFP) plasma is flattening of the parallel current density profile effected by a fluctuation-induced dynamo emf in Ohm's law. Nonlinear two-fluid modeling of macroscopic RFP dynamics has shown appreciable coupling of magnetic relaxation and the evolution of plasma flow. Accurate modeling of RFP dynamics requires the Hall effect in Ohm's law as well as first order ion finite Larmor radius (FLR) effects, represented by the Braginskii ion gyroviscous stress tensor. New results find that the Hall dynamo effect from < J × B > / ne can counter the MHD effect from - < V × B > in some of the relaxation events. The MHD effect dominates these events and relaxes the current profile toward the Taylor state, but the opposition of the two dynamos generates plasma flow in the direction of equilibrium current density, consistent with experimental measurements. Detailed experimental measurements of the MHD and Hall emf terms are compared to these extended MHD predictions. Tracking the evolution of magnetic energy, helicity, and hybrid helicity during relaxation identifies the most important contributions in single-fluid and two-fluid models. Magnetic helicity is well conserved relative to the magnetic energy during relaxation. The hybrid helicity is dominated by magnetic helicity in realistic low-beta pinch conditions and is also well conserved. Differences of less than 1 % between magnetic helicity and hybrid helicity are observed with two-fluid modeling and result from cross helicity evolution through ion FLR effects, which have not been included in contemporary relaxation theories. The kinetic energy driven by relaxation in the computations is dominated by velocity components perpendicular to the magnetic field, an effect that had not been predicted. Work performed at University of Wisconsin-Madison. LA-UR-16-24727.

Seismic-reflection studies, offshore Santa Maria Province, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bird, K.J.; Childs, J.R.; Taylor, D.J.

1991-02-01

Well data and seismic-reflection records are being analyzed to provide a subsurface geologic framework for the US Geological Survey's Santa Maria Province project. This project, jointly sponsored by the Evolution of Sedimentary Basins and Onshore Oil and Gas Investigations Programs, in a basin-evolution and petroleum geology study focusing on the geologically complex and tectonically active south-central California margin. The area embraces several basins and basin fragments including the onshore Santa Maria, offshore Santa Maria, Pismo, Huasna, Sur, Santa Lucia, and western Santa Barbara-Ventura. These basins have many similarities, including generally synchronous formation at about the end of the Oligocene, developmentmore » on a complex assemblage of Mesozoic tectonostratigraphic terranes, and basin fill consisting of Neogene clastic marine and nonmarine deposits, minor volcanic rocks, and organic-rich biogenous deposits of the Monterey Formation. Despite these similarities, basin origins are controversial and paleogeographies uncertain. In 1990, the US Geological Survey collected approximately 130 line-mi of multichannel seismic reflection data in seven profiles off-shore California from Morro Bay south to the western Santa Barbara Channel. These are the first US Geological Survey seismic data collected in this area since the early 1980s exploratory drilling began in the offshore Santa Maria basin. Profiles were generally oriented perpendicular to structural grain and located to intersect as many well-sites and pre-existing seismic profiles as possible. Profile orientation and spacing were designed to provide the offshore extensions of onshore well-correlation profiles currently under construction. With synthetic seismograms the authors are integrating the stratigraphy of the wells with these seismic-reflection records.« less

Ship wakes and their manifestations on the sea surface

NASA Astrophysics Data System (ADS)

Ermakov, Stanislav; Kapustin, Ivan; Kalimulin, Rashid

2013-04-01

Spatial/temporal evolution of turbulence generated by surface ships and the effect of the wake on short wind waves has been studied on the Black Sea and on the Gorky Water Reservoir. Measurements of currents in ship wakes were conducted using an Acoustic Doppler Current Profiler deployed from a motor boat. It was obtained that the temporal/spatial evolution of the wake width could be described approximately by a 0.4-power dependence, and the wake depth remained nearly constant at its initial stage. This allowed one to consider the wake widening as a one-dimensional process. We have developed a simple one-dimensional model of ship wake evolution using a semi-empirical theory of turbulence, and the initial stage of the wake widening (when neglecting dissipation) was described by the equation of turbulent energy balance with the pulse initial condition. Mean circulating currents in the wake zone resulting in the wind wave intensification ("suloi" areas) at the boundaries of the wake were detected in experiment. The asymmetry of the "suloi" bands was observed when the wind was blowing nearly perpendicular to the wake axis. It was shown that the later stage of the wake evolution is characterized by the formation of slick bands at the edges of the wake. The slick bands is a result of the transport of surfactants to the water surface by air bubbles in the wake and their compression due to the mean circulating currents. The work was supported by RFBR (projects 12-05-31237, 11-05-00295), the Program RAN Radiophysics, and by the Russian Government (Grants No. 11.G34.31.0048 and 11.G34.31.0078).

Transport and contact-free investigation of REBCO thin film temperature dependent pinning landscapes

NASA Astrophysics Data System (ADS)

Sinclair, John; Jaroszynski, Jan; Hu, Xinbo; Santos, Michael

2013-03-01

Studies of the pinning mechanisms and landscapes of REBa2Cu3Ox (RE=rare earth elements) thin films have been a topic of study in recent years due to, among other reasons, their ability to introduce nonsuperconducting phases and defects. Here we will focus on REBCO thin films with BaZrO3 nanocolumns and other isotropic defects. The evolution of the dominant pinning mechanisms seems to change as a function of temperature even to the point that samples with similar critical current density properties at high temperatures can have distinctly different properties at low temperatures. Earlier work focused on the angular selectivity of the current density profile, though other properties (such as alpha values) can evolve as well. Characteristic results accentuating this evolution of current density properties will be presented. Challenges exist in evaluating these low temperature properties in high magnetic fields, therefore both transport and contact-free results were be presented to compliment the work. Support for this work is provided by the NHMFL via NSF DRM 0654118.

Incorporating evolution of transcription factor binding sites into annotated alignments.

PubMed

Bais, Abha S; Grossmann, Stefen; Vingron, Martin

2007-08-01

Identifying transcription factor binding sites (TFBSs) is essential to elucidate putative regulatory mechanisms. A common strategy is to combine cross-species conservation with single sequence TFBS annotation to yield "conserved TFBSs". Most current methods in this field adopt a multi-step approach that segregates the two aspects. Again, it is widely accepted that the evolutionary dynamics of binding sites differ from those of the surrounding sequence. Hence, it is desirable to have an approach that explicitly takes this factor into account. Although a plethora of approaches have been proposed for the prediction of conserved TFBSs, very few explicitly model TFBS evolutionary properties, while additionally being multi-step. Recently, we introduced a novel approach to simultaneously align and annotate conserved TFBSs in a pair of sequences. Building upon the standard Smith-Waterman algorithm for local alignments, SimAnn introduces additional states for profiles to output extended alignments or annotated alignments. That is, alignments with parts annotated as gaplessly aligned TFBSs (pair-profile hits)are generated. Moreover,the pair- profile related parameters are derived in a sound statistical framework. In this article, we extend this approach to explicitly incorporate evolution of binding sites in the SimAnn framework. We demonstrate the extension in the theoretical derivations through two position-specific evolutionary models, previously used for modelling TFBS evolution. In a simulated setting, we provide a proof of concept that the approach works given the underlying assumptions,as compared to the original work. Finally, using a real dataset of experimentally verified binding sites in human-mouse sequence pairs,we compare the new approach (eSimAnn) to an existing multi-step tool that also considers TFBS evolution. Although it is widely accepted that binding sites evolve differently from the surrounding sequences, most comparative TFBS identification methods do not explicitly consider this.Additionally, prediction of conserved binding sites is carried out in a multi-step approach that segregates alignment from TFBS annotation. In this paper, we demonstrate how the simultaneous alignment and annotation approach of SimAnn can be further extended to incorporate TFBS evolutionary relationships. We study how alignments and binding site predictions interplay at varying evolutionary distances and for various profile qualities.

Measuring gravity currents in the Chicago River, Chicago, Illinois

USGS Publications Warehouse

Oberg, K.A.; Czuba, J.A.; Johnson, K.K.

2008-01-01

Recent studies of the Chicago River have determined that gravity currents are responsible for persistent bidirectional flows that have been observed in the river. A gravity current is the flow of one fluid within another caused by a density difference between the fluids. These studies demonstrated how acoustic Doppler current profilers (ADCP) can be used to detect and characterize gravity currents in the field. In order to better understand the formation and evolution of these gravity currents, the U.S. Geological Survey (USGS) has installed ADCPs and other instruments to continuously measure gravity currents in the Chicago River and the North Branch Chicago River. These instruments include stage sensors, thermistor strings, and both upward-looking and horizontal ADCPs. Data loggers and computers installed at gaging stations along the river are used to collect data from these instruments and transmit them to USGS offices. ?? 2008 IEEE.

Direct measurements of safety factor profiles with motional Stark effect for KSTAR tokamak discharges with internal transport barriers

NASA Astrophysics Data System (ADS)

Ko, J.; Chung, J.

2017-06-01

The safety factor profile evolutions have been measured from the plasma discharges with the external current drive mechanism such as the multi-ion-source neutral beam injection for the Korea Superconducting Tokamak Advanced Research (KSTAR) for the first time. This measurement has been possible by the newly installed motional Stark effect (MSE) diagnostic system that utilizes the polarized Balmer-alpha emission from the energetic neutral deuterium atoms induced by the Stark effect under the Lorentz electric field. The 25-channel KSTAR MSE diagnostic is based on the conventional photoelastic modulator approach with the spatial and temporal resolutions less than 2 cm (for the most of the channels except 2 to 3 channels inside the magnetic axis) and about 10 ms, respectively. The strong Faraday rotation imposed on the optical elements in the diagnostic system is calibrated out from a separate and well-designed polarization measurement procedure using an in-vessel reference polarizer during the toroidal-field ramp-up phase before the plasma experiment starts. The combination of the non-inductive current drive during the ramp-up and shape control enables the formation of the internal transport barrier where the pitch angle profiles indicate flat or slightly hollow profiles in the safety factor.

Cross-Shore Numerical Model CSHORE for Waves, Currents, Sediment Transport and Beach Profile Evolution

DTIC Science & Technology

2012-09-01

still water shoreline. This modification is necessary for a berm that is slanted downward toward the toe of a dune . The wet probability Pw on the...high dune provides storm protection and damage reduction, recreational and economical benefits, and biological habitats for plants and animals. Most...has been used to predict wave overwash of dunes . The hydrodynamic model has also been extended to the wet and dry zone on a permeable bottom for

COMPLEX EVOLUTION OF BILE SALTS IN BIRDS

PubMed Central

Hagey, Lee R.; Vidal, Nicolas; Hofmann, Alan F.; Krasowski, Matthew D.

2010-01-01

Bile salts are the major end-metabolites of cholesterol and are important in lipid digestion and shaping of the gut microflora. There have been limited studies of bile-salt variation in birds. The purpose of our study was to determine bile-salt variation among birds and relate this variation to current avian phylogenies and hypotheses on the evolution of bile salt pathways. We determined the biliary bile-salt composition of 405 phylogenetically diverse bird species, including 7 paleognath species. Bile salt profiles were generally stable within bird families. Complex bile-salt profiles were more common in omnivores and herbivores than in carnivores. The structural variation of bile salts in birds is extensive and comparable to that seen in surveys of bile salts in reptiles and mammals. Birds produce many of the bile salts found throughout nonavian vertebrates and some previously uncharacterized bile salts. One difference between birds and other vertebrates is extensive hydroxylation of carbon-16 of bile salts in bird species. Comparison of our data set of bird bile salts with that of other vertebrates, especially reptiles, allowed us to infer evolutionary changes in the bile salt synthetic pathway. PMID:21113274

Etch Profile Simulation Using Level Set Methods

NASA Technical Reports Server (NTRS)

Hwang, Helen H.; Meyyappan, Meyya; Arnold, James O. (Technical Monitor)

1997-01-01

Etching and deposition of materials are critical steps in semiconductor processing for device manufacturing. Both etching and deposition may have isotropic and anisotropic components, due to directional sputtering and redeposition of materials, for example. Previous attempts at modeling profile evolution have used so-called "string theory" to simulate the moving solid-gas interface between the semiconductor and the plasma. One complication of this method is that extensive de-looping schemes are required at the profile corners. We will present a 2D profile evolution simulation using level set theory to model the surface. (1) By embedding the location of the interface in a field variable, the need for de-looping schemes is eliminated and profile corners are more accurately modeled. This level set profile evolution model will calculate both isotropic and anisotropic etch and deposition rates of a substrate in low pressure (10s mTorr) plasmas, considering the incident ion energy angular distribution functions and neutral fluxes. We will present etching profiles of Si substrates in Ar/Cl2 discharges for various incident ion energies and trench geometries.

The Secular Evolution Of Disc Galaxies And The Origin Of Exponential And Double Exponential Surface Density Profiles

NASA Astrophysics Data System (ADS)

Elmegreen, Bruce G.

2016-10-01

Exponential radial profiles are ubiquitous in spiral and dwarf Irregular galaxies, but the origin of this structural form is not understood. This talk will review the observations of exponential and double exponential disks, considering both the light and the mass profiles, and the contributions from stars and gas. Several theories for this structure will also be reviewed, including primordial collapse, bar and spiral torques, clump torques, galaxy interactions, disk viscosity and other internal processes of angular momentum exchange, and stellar scattering off of clumpy structure. The only process currently known that can account for this structure in the most theoretically difficult case is stellar scattering off disks clumps. Stellar orbit models suggest that such scattering can produce exponentials even in isolated dwarf irregulars that have no bars or spirals, little shear or viscosity, and profiles that go out too far for the classical Mestel case of primordial collapse with specific angular momentum conservation.

Measurements and modeling of transport and impurity radial profiles in the EXTRAP T2R reversed field pinch

NASA Astrophysics Data System (ADS)

Kuldkepp, M.; Brunsell, P. R.; Cecconello, M.; Dux, R.; Menmuir, S.; Rachlew, E.

2006-09-01

Radial impurity profiles of oxygen in the rebuilt reversed field pinch EXTRAP T2R [P. R. Brunsell et al., Plasma Phys. Control. Fusion 43, 1457 (2001)] have been measured with a multichannel spectrometer. Absolute ion densities for oxygen peak between 1-4×1010cm-3 for a central electron density of 1×1013cm-3. Transport simulations with the one-dimensional transport code STRAHL with a diffusion coefficient of 20m2 s-1 yield density profiles similar to those measured. Direct measurement of the ion profile evolution during pulsed poloidal current drive suggests that the diffusion coefficient is reduced by a factor ˜2 in the core but remains unaffected toward the edge. Core transport is not significantly affected by the radial magnetic field growth seen at the edge in discharges without feedback control. This indicates that the mode core amplitude remains the same while the mode eigenfunction increases at the edge.

Coupling Landform Evolution and Soil Pedogenesis - Initial Results From the SSSPAM5D Model

NASA Astrophysics Data System (ADS)

Willgoose, G. R.; Welivitiya, W. D. D. P.; Hancock, G. R.; Cohen, S.

2015-12-01

Evolution of soil on a dynamic landform is a crucial next step in landscape evolution modelling. Some attempts have been taken such as MILESD by Vanwalleghem et al. to develop a first model which is capable of simultaneously evolving both the soil profile and the landform. In previous work we have presented physically based models for soil pedogenesis, mARM and SSSPAM. In this study we present the results of coupling a landform evolution model with our SSSPAM5D soil pedogenesis model. In previous work the SSSPAM5D soil evolution model was used to identify trends of the soil profile evolution on a static landform. Two pedogenetic processes, namely (1) armouring due to erosion, and (2) physical and chemical weathering were used in those simulations to evolve the soil profile. By incorporating elevation changes (due to erosion and deposition) we have advanced the SSSPAM5D modelling framework into the realm of landscape evolution. Simulations have been run using elevation and soil grading data of the engineered landform (spoil heap) at the Ranger Uranium Mine, Northern Territory, Australia. The results obtained for the coupled landform-soil evolution simulations predict the erosion of high slope areas, development of rudimentary channel networks in the landform and deposition of sediments in lowland areas, and qualitatively consistent with landform evolution models on their own. Examination of the soil profile characteristics revealed that hill crests are weathering dominated and tend to develop a thick soil layer. The steeper hillslopes at the edge of the landform are erosion dominated with shallow soils while the foot slopes are deposition dominated with thick soil layers. The simulation results of our coupled landform and soil evolution model provide qualitatively correct and timely characterization of the soil evolution on a dynamic landscape. Finally we will compare the characteristics of erosion and deposition predicted by the coupled landform-soil SSSPAM landscape simulator, with landform evolution simulations using a static soil.

Ridge-Runnel and Swash Dynamics Field Experiment on a Steep Meso-Tidal Beach

NASA Astrophysics Data System (ADS)

Figlus, J.; Song, Y.-K.; Chardon-Maldonado, P.; Puleo, J. A.

2014-12-01

Ridge-runnel (RR) systems are morphological features that may form in the intermittently wet and dry zone of the beach immediately after storm events. Their onshore migration provides a natural way of recovery for an eroded beach but the detailed swash interactions and complex feedback mechanisms between wave dynamics, sediment transport and profile evolution are not well understood and challenging to measure in-situ. During a storm, elevated water levels and large waves can significantly erode the beach profile in a matter of hours through offshore-directed sediment transport. The beach recovery process, on the other hand, occurs over a much longer time period during less intense wave conditions. In the beginning of this 3-week field campaign at South Bethany Beach, Delaware, a Nor'easter, eroded significant portions of this steep, meso-tidal beach and formed a pronounced RR system which then evolved during the less energetic conditions after the storm. An extensive cross-shore array of sensors was installed immediately after the storm measuring near-bed velocity profiles (5 Nortek Vectrino Profilers) and horizontal velocities (6 Sontec Electromagnetic Current Meters; 1 side-looking Nortek Vectrino) suspended sediment concentrations (10 Optical Backscatter Sensors OBS-3+), and pressure fluctuations (7 GE Druck pressure transducers) in the swash zone. Dense topography surveys of the RR system were conducted twice a day during low tide conditions with a Leica RTK GPS rover system. In addition, sediment grab samples along the entire RR cross-section were collected daily. An offshore ADCP with surface wave tracking capability (Nortek 2MHz AWAC AST) measured directional wave spectra and current profiles at a water depth of approximately 6m. The RR system showed rapid onshore migration over the two tide cycles immediately after the storm, followed by a period of vertical ridge accretion of up to 3 ft at certain locations. A first look at the collected data and analysis results related to the feedback mechanisms between wave forcing and RR evolution is presented along with a discussion of difficulties encountered during the experiment.

Exponential Stellar Disks in Low Surface Brightness Galaxies: A Critical Test of Viscous Evolution

NASA Astrophysics Data System (ADS)

Bell, Eric F.

2002-12-01

Viscous redistribution of mass in Milky Way-type galactic disks is an appealing way of generating an exponential stellar profile over many scale lengths, almost independent of initial conditions, requiring only that the viscous timescale and star formation timescale are approximately equal. However, galaxies with solid-body rotation curves cannot undergo viscous evolution. Low surface brightness (LSB) galaxies have exponential surface brightness profiles, yet have slowly rising, nearly solid-body rotation curves. Because of this, viscous evolution may be inefficient in LSB galaxies: the exponential profiles, instead, would give important insight into initial conditions for galaxy disk formation. Using star formation laws from the literature and tuning the efficiency of viscous processes to reproduce an exponential stellar profile in Milky Way-type galaxies, I test the role of viscous evolution in LSB galaxies. Under the conservative and not unreasonable condition that LSB galaxies are gravitationally unstable for at least a part of their lives, I find that it is impossible to rule out a significant role for viscous evolution. This type of model still offers an attractive way of producing exponential disks, even in LSB galaxies with slowly rising rotation curves.

Implementing a conceptual model of physical and chemical soil profile evolution

NASA Astrophysics Data System (ADS)

Kirkby, Mike

2017-04-01

When soil profile composition is generalised in terms of the proportion, p, of bedrock remaining (= 1 - depletion ratio), then other soil processes can also be expressed in terms of p, and 'soil depth' described by the integral of (1-p) down to bedrock. Soil profile evolution is expressed as the advance of a sigmoidal weathering front into the critical zone under the action of upward ionic diffusion of weathering products; downward advection of solutes in percolating waters, with loss of (cleanish) water as evapotranspiration and (solute-laden) water as a lateral sub-surface flow increment; and mechanical denudation increment at the surface. Each component responds to the degree of weathering. Percolation is limited by precipitation, evapotranspiration demand and the degree of weathering at each level in the profile which diverts subsurface flow. Mechanical removal rates are considered to broadly increase as weathering proceeds, as grain size and dilation angle decreases. The implication of these assumptions can be examined for steady state profiles, for which observed relationships between mechanical and chemical denudation rates; and between chemical denudation and critical zone depth are reproduced. For non-steady state evolution, these relationships break down, but provide a basis for linking critical zone with hillslope/ landform evolution.

Modélisation morphodynamique cross-shore d'un estran vaseux

NASA Astrophysics Data System (ADS)

Waeles, Benoı̂t; Le Hir, Pierre; Silva Jacinto, Ricardo

2004-08-01

Numerical experiments were performed to simulate the profile evolution of an intertidal mudflat with a 1D cross-shore morphodynamical model. First, the hydrodynamical forcing is a cross-shore tidal current due to semi-diurnal variations of the free surface elevation at the open boundary. Further, considering the conservation of the action density of surface gravity waves, a wave height (and resulting bottom shear stress) calculation is added to the morphodynamical model. Results of the numerical experiments show that the shape of the profile reaches equilibrium. The mudflat progrades continually when the forcing is tide only, whereas it can be steady under the simultaneous action of tide and waves. To cite this article: B. Waeles et al., C. R. Geoscience 336 (2004).

Effects of MHD instabilities on neutral beam current drive

NASA Astrophysics Data System (ADS)

Podestà, M.; Gorelenkova, M.; Darrow, D. S.; Fredrickson, E. D.; Gerhardt, S. P.; White, R. B.

2015-05-01

Neutral beam injection (NBI) is one of the primary tools foreseen for heating, current drive (CD) and q-profile control in future fusion reactors such as ITER and a Fusion Nuclear Science Facility. However, fast ions from NBI may also provide the drive for energetic particle-driven instabilities (e.g. Alfvénic modes (AEs)), which in turn redistribute fast ions in both space and energy, thus hampering the control capabilities and overall efficiency of NB-driven current. Based on experiments on the NSTX tokamak (M. Ono et al 2000 Nucl. Fusion 40 557), the effects of AEs and other low-frequency magneto-hydrodynamic instabilities on NB-CD efficiency are investigated. A new fast ion transport model, which accounts for particle transport in phase space as required for resonant AE perturbations, is utilized to obtain consistent simulations of NB-CD through the tokamak transport code TRANSP. It is found that instabilities do indeed reduce the NB-driven current density over most of the plasma radius by up to ∼50%. Moreover, the details of the current profile evolution are sensitive to the specific model used to mimic the interaction between NB ions and instabilities. Implications for fast ion transport modeling in integrated tokamak simulations are briefly discussed.

Effects of MHD instabilities on neutral beam current drive

DOE PAGES

Podestà, M.; Gorelenkova, M.; Darrow, D. S.; ...

2015-04-17

One of the primary tools foreseen for heating, current drive (CD) and q-profile control in future fusion reactors such as ITER and a Fusion Nuclear Science Facility is the neutral beam injection (NBI). However, fast ions from NBI may also provide the drive for energetic particle-driven instabilities (e.g. Alfvénic modes (AEs)), which in turn redistribute fast ions in both space and energy, thus hampering the control capabilities and overall efficiency of NB-driven current. Based on experiments on the NSTX tokamak (M. Ono et al 2000 Nucl. Fusion 40 557), the effects of AEs and other low-frequency magneto-hydrodynamic instabilities on NB-CDmore » efficiency are investigated. When looking at the new fast ion transport model, which accounts for particle transport in phase space as required for resonant AE perturbations, is utilized to obtain consistent simulations of NB-CD through the tokamak transport code TRANSP. It is found that instabilities do indeed reduce the NB-driven current density over most of the plasma radius by up to ~50%. Moreover, the details of the current profile evolution are sensitive to the specific model used to mimic the interaction between NB ions and instabilities. Finally, implications for fast ion transport modeling in integrated tokamak simulations are briefly discussed.« less

The transcriptomic and evolutionary signature of social interactions regulating honey bee caste development.

PubMed

Vojvodic, Svjetlana; Johnson, Brian R; Harpur, Brock A; Kent, Clement F; Zayed, Amro; Anderson, Kirk E; Linksvayer, Timothy A

2015-11-01

The caste fate of developing female honey bee larvae is strictly socially regulated by adult nurse workers. As a result of this social regulation, nurse-expressed genes as well as larval-expressed genes may affect caste expression and evolution. We used a novel transcriptomic approach to identify genes with putative direct and indirect effects on honey bee caste development, and we subsequently studied the relative rates of molecular evolution at these caste-associated genes. We experimentally induced the production of new queens by removing the current colony queen, and we used RNA sequencing to study the gene expression profiles of both developing larvae and their caregiving nurses before and after queen removal. By comparing the gene expression profiles of queen-destined versus worker-destined larvae as well as nurses observed feeding these two types of larvae, we identified larval and nurse genes associated with caste development. Of 950 differentially expressed genes associated with caste, 82% were expressed in larvae with putative direct effects on larval caste, and 18% were expressed in nurses with putative indirect effects on caste. Estimated selection coefficients suggest that both nurse and larval genes putatively associated with caste are rapidly evolving, especially those genes associated with worker development. Altogether, our results suggest that indirect effect genes play important roles in both the expression and evolution of socially influenced traits such as caste.

Clinically Applicable Inhibitors Impacting Genome Stability.

PubMed

Prakash, Anu; Garcia-Moreno, Juan F; Brown, James A L; Bourke, Emer

2018-05-13

Advances in technology have facilitated the molecular profiling (genomic and transcriptomic) of tumours, and has led to improved stratification of patients and the individualisation of treatment regimes. To fully realize the potential of truly personalised treatment options, we need targeted therapies that precisely disrupt the compensatory pathways identified by profiling which allow tumours to survive or gain resistance to treatments. Here, we discuss recent advances in novel therapies that impact the genome (chromosomes and chromatin), pathways targeted and the stage of the pathways targeted. The current state of research will be discussed, with a focus on compounds that have advanced into trials (clinical and pre-clinical). We will discuss inhibitors of specific DNA damage responses and other genome stability pathways, including those in development, which are likely to synergistically combine with current therapeutic options. Tumour profiling data, combined with the knowledge of new treatments that affect the regulation of essential tumour signalling pathways, is revealing fundamental insights into cancer progression and resistance mechanisms. This is the forefront of the next evolution of advanced oncology medicine that will ultimately lead to improved survival and may, one day, result in many cancers becoming chronic conditions, rather than fatal diseases.

Characterization of peeling modes in a low aspect ratio tokamak

NASA Astrophysics Data System (ADS)

Bongard, M. W.; Thome, K. E.; Barr, J. L.; Burke, M. G.; Fonck, R. J.; Hinson, E. T.; Redd, A. J.; Schlossberg, D. J.

2014-11-01

Peeling modes are observed at the plasma edge in the Pegasus Toroidal Experiment under conditions of high edge current density (Jedge ˜ 0.1 MA m-2) and low magnetic field (B ˜ 0.1 T) present at near-unity aspect ratio. Their macroscopic properties are measured using external Mirnov coil arrays, Langmuir probes and high-speed visible imaging. The modest edge parameters and short pulse lengths of Pegasus discharges permit direct measurement of the internal magnetic field structure with an insertable array of Hall-effect sensors, providing the current profile and its temporal evolution. Peeling modes generate coherent, edge-localized electromagnetic activity with low toroidal mode numbers n ⩽ 3 and high poloidal mode numbers, in agreement with theoretical expectations of a low-n external kink structure. Coherent MHD fluctuation amplitudes are found to be strongly dependent on the experimentally measured Jedge/B peeling instability drive, consistent with theory. Peeling modes nonlinearly generate ELM-like, field-aligned filamentary structures that detach from the edge and propagate radially outward. The KFIT equilibrium code is extended with an Akima spline profile parameterization and an improved model for induced toroidal wall current estimation to obtain a reconstruction during peeling activity with its current profile constrained by internal Hall measurements. It is used to test the analytic peeling stability criterion and numerically evaluate ideal MHD stability. Both approaches predict instability, in agreement with experiment, with the latter identifying an unstable external kink.

Internal transport barrier triggered by non-linear lower hybrid wave deposition under condition of beam-driven toroidal rotation

NASA Astrophysics Data System (ADS)

Gao, Q. D.; Budny, R. V.

2015-03-01

By using gyro-Landau fluid transport model (GLF23), time-dependent integrated modeling is carried out using TRANSP to explore the dynamic process of internal transport barrier (ITB) formation in the neutral beam heating discharges. When the current profile is controlled by LHCD (lower hybrid current drive), with appropriate neutral beam injection, the nonlinear interplay between the transport determined gradients in the plasma temperature (Ti,e) and toroidal velocity (Vϕ) and the E×B flow shear (including q-profile) produces transport bifurcations, generating spontaneously a stepwise growing ITB. In the discharge, the constraints imposed by the wave propagation condition causes interplay of the LH driven current distribution with the plasma configuration modification, which constitutes non-linearity in the LH wave deposition. The non-linear effects cause bifurcation in LHCD, generating two distinct quasi-stationary reversed magnetic shear configurations. The change of current profile during the transition period between the two quasi-stationary states results in increase of the E×B shearing flow arising from toroidal rotation. The turbulence transport suppression by sheared E×B flow during the ITB development is analysed, and the temporal evolution of some parameters characterized the plasma confinement is examined. Ample evidence shows that onset of the ITB development is correlated with the enhancement of E×B shearing rate caused by the bifurcation in LHCD. It is suggested that the ITB triggering is associated with the non-linear effects of the LH power deposition.

Dynamics of Cathode-Associated Microbial Communities and Metabolite Profiles in a Glycerol-Fed Bioelectrochemical System

PubMed Central

Dennis, Paul G.; Harnisch, Falk; Yeoh, Yun Kit; Tyson, Gene W.

2013-01-01

Electrical current can be used to supply reducing power to microbial metabolism. This phenomenon is typically studied in pure cultures with added redox mediators to transfer charge. Here, we investigate the development of a current-fed mixed microbial community fermenting glycerol at the cathode of a bioelectrochemical system in the absence of added mediators and identify correlations between microbial diversity and the respective product outcomes. Within 1 week of inoculation, a Citrobacter population represented 95 to 99% of the community and the metabolite profiles were dominated by 1,3-propanediol and ethanol. Over time, the Citrobacter population decreased in abundance while that of a Pectinatus population and the formation of propionate increased. After 6 weeks, several Clostridium populations and the production of valerate increased, which suggests that chain elongation was being performed. Current supply was stopped after 9 weeks and was associated with a decrease in glycerol degradation and alcohol formation. This decrease was reversed by resuming current supply; however, when hydrogen gas was bubbled through the reactor during open-circuit operation (open-circuit potential) as an alternative source of reducing power, glycerol degradation and metabolite production were unaffected. Cyclic voltammetry revealed that the community appeared to catalyze the hydrogen evolution reaction, leading to a +400-mV shift in its onset potential. Our results clearly demonstrate that current supply can alter fermentation profiles; however, further work is needed to determine the mechanisms behind this effect. In addition, operational conditions must be refined to gain greater control over community composition and metabolic outcomes. PMID:23603684

Time evolution of negative ion profile in a large cesiated negative ion source applicable to fusion reactors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoshida, M., E-mail: yoshida.masafumi@jaea.go.jp; Hanada, M.; Kojima, A.

2016-02-15

To understand the physics of the cesium (Cs) recycling in the large Cs-seeded negative ion sources relevant to ITER and JT-60SA with ion extraction area of 45-60 cm × 110-120 cm, the time evolution of the negative ion profile was precisely measured in JT-60SA where the ion extraction area is longitudinally segmented into 5. The Cs was seeded from the oven at 180 °C to the ion source. After 1 g of Cs input, surface production of the negative ions appeared only in the central segment where a Cs nozzle was located. Up to 2 g of Cs, the negative ionmore » profile was longitudinally expanded over full ion extraction area. The measured time evolution of the negative ion profile has the similar tendency of distribution of the Cs atoms that is calculated. From the results, it is suggested that Cs atom distribution is correlated with the formation of the negative ion profile.« less

Self-organized stationary states of inductively driven tokamaks

NASA Astrophysics Data System (ADS)

Jardin, S. C.; Ferraro, N.; Krebs, I.; Chen, J.

2014-10-01

We report on a mechanism for preventing the current and temperature profiles from peaking in a stationary state tokamak. For certain parameters, regardless of the initial state, the plasma profiles will evolve into a self-organized state with the safety factor q slightly above 1 and constant in a central volume. This large shear free region is unstable to interchange modes for any pressure gradient, and the instability drives a strong (1,1) helical flow. This flow has the property that V × B is the gradient of a potential, so it does not affect the magnetic field evolution. However, the driven flow appears in the temperature evolution equation and dominates over the thermal conductivity in the center of the discharge. The net effect is to keep the central temperature (and resistivity) profiles flat so that the resistive steady state preserves the self organized state with q slightly above 1 and constant in the central volume. This mechanism was discovered with the M3D-C1 toroidal 3D MHD code, and could possibly explain the mechanism at play in non-sawtoothing discharges with q0 just above 1 such as hybrid modes in DIII-D and ASDEX-U and long-lived modes in NSTX and MAST. This work was supported by US DOE Contract No. DE-AC02-09CHI1446, MPPC, and SciDAC CEMM.

Equilibrium evolution in oscillating-field current-drive experiments

NASA Astrophysics Data System (ADS)

McCollam, K. J.; Anderson, J. K.; Blair, A. P.; Craig, D.; Den Hartog, D. J.; Ebrahimi, F.; O'Connell, R.; Reusch, J. A.; Sarff, J. S.; Stephens, H. D.; Stone, D. R.; Brower, D. L.; Deng, B. H.; Ding, W. X.

2010-08-01

Oscillating-field current drive (OFCD) is a proposed method of steady-state toroidal plasma sustainment in which ac poloidal and toroidal loop voltages are applied to produce a dc plasma current. OFCD is added to standard, inductively sustained reversed-field pinch plasmas in the Madison Symmetric Torus [R. N. Dexter et al., Fusion Technol. 19, 131 (1991)]. Equilibrium profiles and fluctuations during a single cycle are measured and analyzed for different relative phases between the two OFCD voltages and for OFCD off. For OFCD phases leading to the most added plasma current, the measured energy confinement is slightly better than that for OFCD off. By contrast, the phase of the maximum OFCD helicity-injection rate also has the maximum decay rate, which is ascribed to transport losses during discrete magnetic-fluctuation events induced by OFCD. Resistive-magnetohydrodynamic simulations of the experiments reproduce the observed phase dependence of the added current.

Objective characterization of bruise evolution using photothermal depth profiling and Monte Carlo modeling

NASA Astrophysics Data System (ADS)

Vidovič, Luka; Milanič, Matija; Majaron, Boris

2015-01-01

Pulsed photothermal radiometry (PPTR) allows noninvasive determination of laser-induced temperature depth profiles in optically scattering layered structures. The obtained profiles provide information on spatial distribution of selected chromophores such as melanin and hemoglobin in human skin. We apply the described approach to study time evolution of incidental bruises (hematomas) in human subjects. By combining numerical simulations of laser energy deposition in bruised skin with objective fitting of the predicted and measured PPTR signals, we can quantitatively characterize the key processes involved in bruise evolution (i.e., hemoglobin mass diffusion and biochemical decomposition). Simultaneous analysis of PPTR signals obtained at various times post injury provides an insight into the variations of these parameters during the bruise healing process. The presented methodology and results advance our understanding of the bruise evolution and represent an important step toward development of an objective technique for age determination of traumatic bruises in forensic medicine.

Constraining the inferred paleohydrologic evolution of a deep unsaturated zone in the Amargosa Desert

USGS Publications Warehouse

Walvoord, Michelle Ann; Stonestrom, David A.; Andraski, Brian J.; Striegl, Robert G.

2004-01-01

Natural flow regimes in deep unsaturated zones of arid interfluvial environments are rarely in hydraulic equilibrium with near-surface boundary conditions imposed by present-day plant–soil–atmosphere dynamics. Nevertheless, assessments of water resources and contaminant transport require realistic estimates of gas, water, and solute fluxes under past, present, and projected conditions. Multimillennial transients that are captured in current hydraulic, chemical, and isotopic profiles can be interpreted to constrain alternative scenarios of paleohydrologic evolution following climatic and vegetational shifts from pluvial to arid conditions. However, interpreting profile data with numerical models presents formidable challenges in that boundary conditions must be prescribed throughout the entire Holocene, when we have at most a few decades of actual records. Models of profile development at the Amargosa Desert Research Site include substantial uncertainties from imperfectly known initial and boundary conditions when simulating flow and solute transport over millennial timescales. We show how multiple types of profile data, including matric potentials and porewater concentrations of Cl−, δD, δ18O, can be used in multiphase heat, flow, and transport models to expose and reduce uncertainty in paleohydrologic reconstructions. Results indicate that a dramatic shift in the near-surface water balance occurred approximately 16000 yr ago, but that transitions in precipitation, temperature, and vegetation were not necessarily synchronous. The timing of the hydraulic transition imparts the largest uncertainty to model-predicted contemporary fluxes. In contrast, the uncertainties associated with initial (late Pleistocene) conditions and boundary conditions during the Holocene impart only small uncertainties to model-predicted contemporaneous fluxes.

Serial profiles of electrostatic potential in five New Mexico thunderstorms

NASA Astrophysics Data System (ADS)

Stolzenburg, Maribeth; Marshall, Thomas C.

2008-07-01

Profiles of electric potential (V) integrated from balloon-borne electric field (E) measurements are used to investigate the electrical evolution of thunderstorms over the mountains in central New Mexico. With sequential soundings through multiple storms, the time skew associated with obtaining V from a noninstantaneous sounding is also studied. The data show that a basic V profile, with a maximum above a minimum, forms in the early stage of the storm and is maintained throughout its mature stage. Series of soundings from individual storms show only a gradual evolution in the V profile from the early through the mature stage, as the extrema descend in altitude and become shallower and vertically closer together. More evolution occurs in the late stage, when the shape of the V profile reverses to have a minimum above a maximum. The 17 V(z) profiles from the mature stage of five different storms are also very similar in overall shape, suggesting that the basic shape is not significantly affected by differences in lightning flash rate among these storms. The findings indicate that the potential profile during a typical sounding in the mature stage is relatively stable, and the overall shape of the mature stage V profile does not change markedly on the time scale of a particular balloon sounding (10-30 min) through New Mexico mountain storms. Thus time-skew problems in the V profiles are minor during a storm's mature stage.

A Physically Based Coupled Chemical and Physical Weathering Model for Simulating Soilscape Evolution

NASA Astrophysics Data System (ADS)

Willgoose, G. R.; Welivitiya, D.; Hancock, G. R.

2015-12-01

A critical missing link in existing landscape evolution models is a dynamic soil evolution models where soils co-evolve with the landform. Work by the authors over the last decade has demonstrated a computationally manageable model for soil profile evolution (soilscape evolution) based on physical weathering. For chemical weathering it is clear that full geochemistry models such as CrunchFlow and PHREEQC are too computationally intensive to be couplable to existing soilscape and landscape evolution models. This paper presents a simplification of CrunchFlow chemistry and physics that makes the task feasible, and generalises it for hillslope geomorphology applications. Results from this simplified model will be compared with field data for soil pedogenesis. Other researchers have previously proposed a number of very simple weathering functions (e.g. exponential, humped, reverse exponential) as conceptual models of the in-profile weathering process. The paper will show that all of these functions are possible for specific combinations of in-soil environmental, geochemical and geologic conditions, and the presentation will outline the key variables controlling which of these conceptual models can be realistic models of in-profile processes and under what conditions. The presentation will finish by discussing the coupling of this model with a physical weathering model, and will show sample results from our SSSPAM soilscape evolution model to illustrate the implications of including chemical weathering in the soilscape evolution model.

Tearing modes induced by perpendicular electron cyclotron resonance heating in the KSTAR tokamak

NASA Astrophysics Data System (ADS)

Lee, H. H.; Lee, S. G.; Seol, J.; Aydemir, A. Y.; Bae, C.; Yoo, J. W.; Na, Y. S.; Kim, H. S.; Woo, M. H.; Kim, J.; Joung, M.; You, K. I.; Park, B. H.

2014-10-01

This paper reports on experimental evidence that shows perpendicular electron cyclotron resonance heating (ECRH) can trigger classical tearing modes when deposited near a rational flux surface. The complex evolution of an m = 2 island is followed during current ramp-up in KSTAR plasmas, from its initial onset as the rational surface enters the ECRH resonance layer to its eventual lock on the wall after the rational surface leaves the layer. Stability analysis coupled to a transport calculation of the current profile with ECRH shows that the perpendicular ECRH may play a significant role in triggering and destabilizing classical m = 2 tearing modes, in agreement with our experimental observation.

Experimental analysis of bruises in human volunteers using radiometric depth profiling and diffuse reflectance spectroscopy

NASA Astrophysics Data System (ADS)

Vidovič, Luka; Milanič, Matija; Majaron, Boris

2015-07-01

We combine pulsed photothermal radiometry (PPTR) depth profiling with diffuse reflectance spectroscopy (DRS) measurements for a comprehensive analysis of bruise evolution in vivo. While PPTR enables extraction of detailed depth distribution and concentration profiles of selected absorbers (e.g. melanin, hemoglobin), DRS provides information in a wide range of visible wavelengths and thus offers an additional insight into dynamics of the hemoglobin degradation products. Combining the two approaches enables us to quantitatively characterize bruise evolution dynamics. Our results indicate temporal variations of the bruise evolution parameters in the course of bruise self-healing process. The obtained parameter values and trends represent a basis for a future development of an objective technique for bruise age determination.

RaInCube: a proposed constellation of precipitation profiling Radars In Cubesat

NASA Astrophysics Data System (ADS)

Peral, E.; Tanelli, S.; Haddad, Z. S.; Stephens, G. L.; Im, E.

2014-12-01

Precipitation radars in Low-Earth-Orbit provide vertically resolved profiles of rain and snow on a global scale. With the recent advances in miniaturized radar and CubeSat/SmallSat technologies, it would now be feasible to launch multiple copies of the same radar instrument in desirable formations to allow measurements of short time scale evolution of atmospheric processes. One such concept is the novel radar architecture compatible with the 6U CubeSat class that is being developed at JPL by exploiting simplification and miniaturization of the radar subsystems. The RaInCube architecture would significantly reduce the number of components, power consumption and mass with respect to existing spaceborne radars. The baseline RaInCube instrument configuration would be a fixed nadir-pointing profiler at Ka-band with a minimum detectable reflectivity better than +10 dBZ at 250m range resolution and 5 km horizontal resolution. The low cost nature of the RaInCube platform would enable deployment of a constellation of identical copies of the same instrument in various relative positions in LEO to address specific observational gaps left open by the current missions that require high-resolution vertical profiling capability. A constellation of only four RaInCubes would populate the precipitation statistics in a distributed fashion across the globe and across the times of day, and therefore, would enable substantially better sampling of the diurnal cycle statistics. One could extend this scheme by adding more RaInCubes in each of the orbital planes, and phase them once in orbit so that they would be separated by an arbitrary amount of time among them. Wide separations (say 20-30 min) would further extend the sampling of the diurnal cycle to sub-hourly scales. Narrower time separations between RaInCubes would allow studying the evolution of convective systems at the convective time scale in each region of interest and would reveal the dominant modes of evolution of each corresponding climatological regime. A constellation of RaInCubes would also be a natural complement to other resources aiming at monitoring the evolution of weather systems, for example the Geostationary IR/VIS imagers, the NEXRAD network, and the GPM constellation.

A first attempt to reproduce basaltic soil chronosequences using a process-based soil profile model: implications for our understanding of soil evolution

NASA Astrophysics Data System (ADS)

Johnson, M.; Gloor, M.; Lloyd, J.

2012-04-01

Soils are complex systems which hold a wealth of information on both current and past conditions and many biogeochemical processes. The ability to model soil forming processes and predict soil properties will enable us to quantify such conditions and contribute to our understanding of long-term biogeochemical cycles, particularly the carbon cycle and plant nutrient cycles. However, attempts to confront such soil model predictions with data are rare, although increasingly more data from chronosquence studies is becoming available for such a purpose. Here we present initial results of an attempt to reproduce soil properties with a process-based soil evolution model similar to the model of Kirkby (1985, J. Soil Science). We specifically focus on the basaltic soils in both Hawaii and north Queensland, Australia. These soils are formed on a series of volcanic lava flows which provide sequences of different aged soils all with a relatively uniform parent material. These soil chronosequences provide a snapshot of a soil profile during different stages of development. Steep rainfall gradients in these regions also provide a system which allows us to test the model's ability to reproduce soil properties under differing climates. The mechanistic, soil evolution model presented here includes the major processes of soil formation such as i) mineral weathering, ii) percolation of rainfall through the soil, iii) leaching of solutes out of the soil profile iv) surface erosion and v) vegetation and biotic interactions. The model consists of a vertical profile and assumes simple geometry with a constantly sloping surface. The timescales of interest are on the order of tens to hundreds of thousand years. The specific properties the model predicts are, soil depth, the proportion of original elemental oxides remaining in each soil layer, pH of the soil solution, organic carbon distribution and CO2 production and concentration. The presentation will focus on a brief introduction of the model, followed by a description of novel methods using tracers such as optically stimulated luminescence (OSL) dates and meteoric 10Be to evaluate the modelled processes of bioturbation and surface erosion. We will also discuss comparisons of modelled properties with observations and conclude with implications on our understanding of soil evolution.

The Evolution of Poxvirus Vaccines

PubMed Central

Sánchez-Sampedro, Lucas; Perdiguero, Beatriz; Mejías-Pérez, Ernesto; García-Arriaza, Juan; Di Pilato, Mauro; Esteban, Mariano

2015-01-01

After Edward Jenner established human vaccination over 200 years ago, attenuated poxviruses became key players to contain the deadliest virus of its own family: Variola virus (VARV), the causative agent of smallpox. Cowpox virus (CPXV) and horsepox virus (HSPV) were extensively used to this end, passaged in cattle and humans until the appearance of vaccinia virus (VACV), which was used in the final campaigns aimed to eradicate the disease, an endeavor that was accomplished by the World Health Organization (WHO) in 1980. Ever since, naturally evolved strains used for vaccination were introduced into research laboratories where VACV and other poxviruses with improved safety profiles were generated. Recombinant DNA technology along with the DNA genome features of this virus family allowed the generation of vaccines against heterologous diseases, and the specific insertion and deletion of poxvirus genes generated an even broader spectrum of modified viruses with new properties that increase their immunogenicity and safety profile as vaccine vectors. In this review, we highlight the evolution of poxvirus vaccines, from first generation to the current status, pointing out how different vaccines have emerged and approaches that are being followed up in the development of more rational vaccines against a wide range of diseases. PMID:25853483

The evolution of poxvirus vaccines.

PubMed

Sánchez-Sampedro, Lucas; Perdiguero, Beatriz; Mejías-Pérez, Ernesto; García-Arriaza, Juan; Di Pilato, Mauro; Esteban, Mariano

2015-04-07

After Edward Jenner established human vaccination over 200 years ago, attenuated poxviruses became key players to contain the deadliest virus of its own family: Variola virus (VARV), the causative agent of smallpox. Cowpox virus (CPXV) and horsepox virus (HSPV) were extensively used to this end, passaged in cattle and humans until the appearance of vaccinia virus (VACV), which was used in the final campaigns aimed to eradicate the disease, an endeavor that was accomplished by the World Health Organization (WHO) in 1980. Ever since, naturally evolved strains used for vaccination were introduced into research laboratories where VACV and other poxviruses with improved safety profiles were generated. Recombinant DNA technology along with the DNA genome features of this virus family allowed the generation of vaccines against heterologous diseases, and the specific insertion and deletion of poxvirus genes generated an even broader spectrum of modified viruses with new properties that increase their immunogenicity and safety profile as vaccine vectors. In this review, we highlight the evolution of poxvirus vaccines, from first generation to the current status, pointing out how different vaccines have emerged and approaches that are being followed up in the development of more rational vaccines against a wide range of diseases.

Disruption of River Networks in Nature and Models

NASA Astrophysics Data System (ADS)

Perron, J. T.; Black, B. A.; Stokes, M.; McCoy, S. W.; Goldberg, S. L.

2017-12-01

Many natural systems display especially informative behavior as they respond to perturbations. Landscapes are no exception. For example, longitudinal elevation profiles of rivers responding to changes in uplift rate can reveal differences among erosional mechanisms that are obscured while the profiles are in equilibrium. The responses of erosional river networks to perturbations, including disruption of their network structure by diversion, truncation, resurfacing, or river capture, may be equally revealing. In this presentation, we draw attention to features of disrupted erosional river networks that a general model of landscape evolution should be able to reproduce, including the consequences of different styles of planetary tectonics and the response to heterogeneous bedrock structure and deformation. A comparison of global drainage directions with long-wavelength topography on Earth, Mars, and Saturn's moon Titan reveals the extent to which persistent and relatively rapid crustal deformation has disrupted river networks on Earth. Motivated by this example and others, we ask whether current models of river network evolution adequately capture the disruption of river networks by tectonic, lithologic, or climatic perturbations. In some cases the answer appears to be no, and we suggest some processes that models may be missing.

Effects of the plasma profiles on photon and pair production in ultrahigh intensity laser solid interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tian, Y. X.; Jin, X. L., E-mail: jinxiaolin@uestc.edu.cn; Yan, W. Z.

The model of photon and pair production in strong field quantum electrodynamics is implemented into our 1D3V particle-in-cell code with Monte Carlo algorithm. Using this code, the evolution of the particles in ultrahigh intensity laser (∼10{sup 23} W/cm{sup 2}) interaction with aluminum foil target is observed. Four different initial plasma profiles are considered in the simulations. The effects of initial plasma profiles on photon and pair production, energy spectra, and energy evolution are analyzed. The results imply that one can set an optimal initial plasma profile to obtain the desired photon distributions.

Evaluation of Thermal Evolution Profiles and Estimation of Kinetic Parameters for Pyrolysis of Coal/Corn Stover Blends Using Thermogravimetric Analysis

DOE PAGES

Bhagavatula, Abhijit; Huffman, Gerald; Shah, Naresh; ...

2014-01-01

The thermal evolution profiles and kinetic parameters for the pyrolysis of two Montana coals (DECS-38 subbituminous coal and DECS-25 lignite coal), one biomass sample (corn stover), and their blends (10%, 20%, and 30% by weight of corn stover) have been investigated at a heating rate of 5°C/min in an inert nitrogen atmosphere, using thermogravimetric analysis. The thermal evolution profiles of subbituminous coal and lignite coal display only one major peak over a wide temperature distribution, ~152–814°C and ~175–818°C, respectively, whereas the thermal decomposition profile for corn stover falls in a much narrower band than that of the coals, ~226–608°C. Themore » nonlinearity in the evolution of volatile matter with increasing percentage of corn stover in the blends verifies the possibility of synergistic behavior in the blends with subbituminous coal where deviations from the predicted yield ranging between 2% and 7% were observed whereas very little deviations (1%–3%) from predicted yield were observed in blends with lignite indicating no significant interactions with corn stover. In addition, a single first-order reaction model using the Coats-Redfern approximation was utilized to predict the kinetic parameters of the pyrolysis reaction. The kinetic analysis indicated that each thermal evolution profile may be represented as a single first-order reaction. Three temperature regimes were identified for each of the coals while corn stover and the blends were analyzed using two and four temperature regimes, respectively.« less

Evaluation of Thermal Evolution Profiles and Estimation of Kinetic Parameters for Pyrolysis of Coal/Corn Stover Blends Using Thermogravimetric Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhagavatula, Abhijit; Huffman, Gerald; Shah, Naresh

The thermal evolution profiles and kinetic parameters for the pyrolysis of two Montana coals (DECS-38 subbituminous coal and DECS-25 lignite coal), one biomass sample (corn stover), and their blends (10%, 20%, and 30% by weight of corn stover) have been investigated at a heating rate of 5°C/min in an inert nitrogen atmosphere, using thermogravimetric analysis. The thermal evolution profiles of subbituminous coal and lignite coal display only one major peak over a wide temperature distribution, ~152–814°C and ~175–818°C, respectively, whereas the thermal decomposition profile for corn stover falls in a much narrower band than that of the coals, ~226–608°C. Themore » nonlinearity in the evolution of volatile matter with increasing percentage of corn stover in the blends verifies the possibility of synergistic behavior in the blends with subbituminous coal where deviations from the predicted yield ranging between 2% and 7% were observed whereas very little deviations (1%–3%) from predicted yield were observed in blends with lignite indicating no significant interactions with corn stover. In addition, a single first-order reaction model using the Coats-Redfern approximation was utilized to predict the kinetic parameters of the pyrolysis reaction. The kinetic analysis indicated that each thermal evolution profile may be represented as a single first-order reaction. Three temperature regimes were identified for each of the coals while corn stover and the blends were analyzed using two and four temperature regimes, respectively.« less

First Results on the Cluster Galaxy Population from the Subaru Hyper Suprime-Cam Survey. III. Brightest Cluster Galaxies, Stellar Mass Distribution, and Active Galaxies

NASA Astrophysics Data System (ADS)

Lin, Yen-Ting; Hsieh, Bau-Ching; Lin, Sheng-Chieh; Oguri, Masamune; Chen, Kai-Feng; Tanaka, Masayuki; Chiu, I.-Non; Huang, Song; Kodama, Tadayuki; Leauthaud, Alexie; More, Surhud; Nishizawa, Atsushi J.; Bundy, Kevin; Lin, Lihwai; Miyazaki, Satoshi

2017-12-01

The unprecedented depth and area surveyed by the Subaru Strategic Program with the Hyper Suprime-Cam (HSC-SSP) have enabled us to construct and publish the largest distant cluster sample out to z∼ 1 to date. In this exploratory study of cluster galaxy evolution from z = 1 to z = 0.3, we investigate the stellar mass assembly history of brightest cluster galaxies (BCGs), the evolution of stellar mass and luminosity distributions, the stellar mass surface density profile, as well as the population of radio galaxies. Our analysis is the first high-redshift application of the top N richest cluster selection, which is shown to allow us to trace the cluster galaxy evolution faithfully. Over the 230 deg2 area of the current HSC-SSP footprint, selecting the top 100 clusters in each of the four redshift bins allows us to observe the buildup of galaxy population in descendants of clusters whose z≈ 1 mass is about 2× {10}14 {M}ȯ . Our stellar mass is derived from a machine-learning algorithm, which is found to be unbiased and accurate with respect to the COSMOS data. We find very mild stellar mass growth in BCGs (about 35% between z = 1 and 0.3), and no evidence for evolution in both the total stellar mass–cluster mass correlation and the shape of the stellar mass surface density profile. We also present the first measurement of the radio luminosity distribution in clusters out to z∼ 1, and show hints of changes in the dominant accretion mode powering the cluster radio galaxies at z∼ 0.8.

Internal transport barrier triggered by non-linear lower hybrid wave deposition under condition of beam-driven toroidal rotation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Q. D., E-mail: qgao@swip.ac.cn; Budny, R. V.

2015-03-15

By using gyro-Landau fluid transport model (GLF23), time-dependent integrated modeling is carried out using TRANSP to explore the dynamic process of internal transport barrier (ITB) formation in the neutral beam heating discharges. When the current profile is controlled by LHCD (lower hybrid current drive), with appropriate neutral beam injection, the nonlinear interplay between the transport determined gradients in the plasma temperature (T{sub i,e}) and toroidal velocity (V{sub ϕ}) and the E×B flow shear (including q-profile) produces transport bifurcations, generating spontaneously a stepwise growing ITB. In the discharge, the constraints imposed by the wave propagation condition causes interplay of the LHmore » driven current distribution with the plasma configuration modification, which constitutes non-linearity in the LH wave deposition. The non-linear effects cause bifurcation in LHCD, generating two distinct quasi-stationary reversed magnetic shear configurations. The change of current profile during the transition period between the two quasi-stationary states results in increase of the E×B shearing flow arising from toroidal rotation. The turbulence transport suppression by sheared E×B flow during the ITB development is analysed, and the temporal evolution of some parameters characterized the plasma confinement is examined. Ample evidence shows that onset of the ITB development is correlated with the enhancement of E×B shearing rate caused by the bifurcation in LHCD. It is suggested that the ITB triggering is associated with the non-linear effects of the LH power deposition.« less

Injector for the University of Maryland Electron Ring (UMER)

NASA Astrophysics Data System (ADS)

Kehne, D.; Godlove, T.; Haldemann, P.; Bernal, S.; Guharay, S.; Kishek, R.; Li, Y.; O'Shea, P.; Reiser, M.; Yun, V.; Zou, Y.; Haber, I.

2001-05-01

The electron beam injector constructed by FM technologies for the University of Maryland Electron Ring (UMER) program is described. The program will use an electron beam to model space-charge-dominated ion beams in a recirculating linac for heavy ion inertial fusion, as well as for high-current muon colliders. The injector consists of a 10 keV, 100 mA electron gun with 50-100 nsec pulse width and a repetition rate of 120 Hz. The e-gun system includes a 6-mask, rotatable aperture plate, a Rogowski current monitor, an ion pump, and a gate valve. The injector beamline consists of a solenoid, a five-quadrupole matching section, two diagnostic chambers, and a fast current monitor. An independent diagnostic chamber also built for UMER will be used to measure horizontal and vertical emittance, current, energy, energy spread, and the evolution of the beam envelope and profile along the injector beamline.

Effect of Intense Optical Excitation on Internal Electric Field Evolution in CdTe Gamma-Ray Detectors

NASA Astrophysics Data System (ADS)

Suzuki, K.; Ichinohe, Y.; Seto, S.

2018-03-01

The time-of-flight (TOF) transient currents in radiation detectors made of CdTe and Cd0.9Zn0.1Te (CZT) have been measured at several optical excitation intensities to investigate the effect of drifting carriers on the internal field. Both detectors show so-called space-charge-perturbed (SCP) current under intense optical excitation. A Monte Carlo (MC) simulation combined with an iterative solution of Poisson's equation is used to reproduce the observed currents under several bias voltages and excitation intensities. The SCP theory describes well the transient current in the CZT detector, whereas injection of holes from the anode and a corresponding reduction of the electron lifetime are further required to describe that in the CdTe detector. We visualize the temporal changes in the charge distribution and internal electric field profiles of both detectors.

Stirred, Not Clumped: Evolution of Temperature Profiles in the Outskirts of Galaxy Clusters

NASA Astrophysics Data System (ADS)

Avestruz, Camille; Nagai, Daisuke; Lau, Erwin T.

2016-12-01

Recent statistical X-ray measurements of the intracluster medium (ICM) indicate that gas temperature profiles in the outskirts of galaxy clusters deviate from self-similar evolution. Using a mass-limited sample of galaxy clusters from cosmological hydrodynamical simulations, we show that the departure from self-similarity can be explained by non-thermal gas motions driven by mergers and accretion. Contrary to previous claims, gaseous substructures only play a minor role in the temperature evolution in cluster outskirts. A careful choice of halo overdensity definition in self-similar scaling mitigates these departures. Our work highlights the importance of non-thermal gas motions in ICM evolution and the use of galaxy clusters as cosmological probes.

MAVEN/IUVS Periapse Lyman-alpha Observations: Variability and Constraints on H and CO2 Abundance

NASA Astrophysics Data System (ADS)

Hughes, A. C. G.; Chaffin, M.; Mierkiewicz, E. J.; Chaufray, J. Y.; Deighan, J.; Schneider, N. M.; Thiemann, E.; Clarke, J. T.; Mayyasi, M.; Jain, S. K.; Crismani, M. M. J.; Stiepen, A.; Montmessin, F.; Epavier, F.; Stewart, I. F.; McClintock, B.; Holsclaw, G.; Jakosky, B. M.

2017-12-01

The abundance of spectroscopic and geomorphologic evidence demonstrating that liquid water once flowed on Mars raises significant questions regarding the history of Martian water and the evolution of the atmosphere into the current hyper-arid climate. Using data from the Imaging UltraViolet Spectrograph (IUVS) onboard the Mars Atmosphere and Volatile EvolutioN (MAVEN) spacecraft, we evaluate the hydrogen Lyman-alpha emission (121.6 nm) across multiple Martian years and solar zenith angles. We create altitude-intensity profiles of atmospheric hydrogen emission using periapse data from all MAVEN orbits to-date. Due to the optically thin emission of the UV-doublet scale height of mid-ultraviolet IUVS data, we are able to indirectly probe the temperature of the atmosphere. By combining mid-ultraviolet and far-ultraviolet IUVS data, we extract temperatures and densities of the upper atmosphere and fit the data using a radiative transfer forward model. Below 120 km, the H Lyman-alpha emission is absorbed by CO2, providing constraint on CO2 in the lower thermosphere. Fitting the altitude-intensity curves below 120 km altitude and comparing spatial and temporal variations of the profiles allows us to constrain CO2 abundances. The results of this work, in combination with other MAVEN findings, will provide better constraints on Martian H and CO2 densities and determining neutral temperatures, as well as a more thorough understanding of the evolution of the Martian atmosphere through time.

Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul.

PubMed

Kolanowska, Marta; Mystkowska, Katarzyna; Kras, Marta; Dudek, Magdalena; Konowalik, Kamil

2016-01-01

The location of possible glacial refugia of six Apostasioideae representatives is estimated based on ecological niche modeling analysis. The distribution of their suitable niches during the last glacial maximum (LGM) is compared with their current potential and documented geographical ranges. The climatic factors limiting the studied species occurrences are evaluated and the niche overlap between the studied orchids is assessed and discussed. The predicted niche occupancy profiles and reconstruction of ancestral climatic tolerances suggest high level of phylogenetic niche conservatism within Apostasioideae.

Transport and reconnection in tokamak sawteeth.

PubMed

Gentle, K W; Austin, M E; Phillips, P E

2003-12-19

The core of a tokamak discharge often undergoes periodic relaxation oscillations, sawteeth, as the steepening current and temperature profiles are flattened by fast reconnection events. Careful analysis of the electron temperature evolution over this cycle gives an estimate of the energy dissipated in the electrons during reconnection and a measure of the transport characteristic (energy flux versus temperature gradient) over the range of parameters occurring over the remainder of the cycle. The energy dissipated is consistent with estimates of the loss of poloidal magnetic energy. The transport characteristics exhibit a wide range of behaviors.

The path to exploring physics in advanced devices with a heavy ion beam probe

NASA Astrophysics Data System (ADS)

Demers, D. R.; Fimognari, P. J.

2012-10-01

The scientific progression of alternative or advanced devices must be met with comparable diagnostic technologies. Heavy ion beam probe innovations from ongoing diagnostic development are meeting this challenge. The diagnostic is uniquely capable of measuring the radial electric field, critically important in stellarators, simultaneously with fluctuations of electron density and electric potential. HIBP measurements can also improve the understanding of edge physics in tokamaks and spherical tori. It can target issues associated with the pedestal region, including the mechanisms underlying the L-H transition, the onset and evolution of ELMs, and the evolution of the electron current density. Beam attenuation (and resulting low signal to noise levels), a challenge to operation on devices with large plasma cross-sections and high ne and Te, can be mitigated with greater beam energies and currents. Other application challenges, such as measurements of plasma fluctuations and profile variations with elevated temporal and spatial resolutions, can be achieved with innovative detectors. The scientific studies motivating the implementation of an HIBP on HSX, ASDEX-U, and W7-X will be presented along with preliminary scoping studies.

NIMROD resistive magnetohydrodynamic simulations of spheromak physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hooper, E. B.; Cohen, B. I.; McLean, H. S.

The physics of spheromak plasmas is addressed by time-dependent, three-dimensional, resistive magnetohydrodynamic simulations with the NIMROD code [C. R. Sovinec et al., J. Comput. Phys. 195, 355 (2004)]. Included in some detail are the formation of a spheromak driven electrostatically by a coaxial plasma gun with a flux-conserver geometry and power systems that accurately model the sustained spheromak physics experiment [R. D. Wood et al., Nucl. Fusion 45, 1582 (2005)]. The controlled decay of the spheromak plasma over several milliseconds is also modeled as the programmable current and voltage relax, resulting in simulations of entire experimental pulses. Reconnection phenomena andmore » the effects of current profile evolution on the growth of symmetry-breaking toroidal modes are diagnosed; these in turn affect the quality of magnetic surfaces and the energy confinement. The sensitivity of the simulation results addresses variations in both physical and numerical parameters, including spatial resolution. There are significant points of agreement between the simulations and the observed experimental behavior, e.g., in the evolution of the magnetics and the sensitivity of the energy confinement to the presence of symmetry-breaking magnetic fluctuations.« less

NIMROD Resistive Magnetohydrodynamic Simulations of Spheromak Physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hooper, E B; Cohen, B I; McLean, H S

The physics of spheromak plasmas is addressed by time-dependent, three-dimensional, resistive magneto-hydrodynamic simulations with the NIMROD code. Included in some detail are the formation of a spheromak driven electrostatically by a coaxial plasma gun with a flux-conserver geometry and power systems that accurately model the Sustained Spheromak Physics Experiment (SSPX) (R. D. Wood, et al., Nucl. Fusion 45, 1582 (2005)). The controlled decay of the spheromak plasma over several milliseconds is also modeled as the programmable current and voltage relax, resulting in simulations of entire experimental pulses. Reconnection phenomena and the effects of current profile evolution on the growth ofmore » symmetry-breaking toroidal modes are diagnosed; these in turn affect the quality of magnetic surfaces and the energy confinement. The sensitivity of the simulation results address variations in both physical and numerical parameters, including spatial resolution. There are significant points of agreement between the simulations and the observed experimental behavior, e.g., in the evolution of the magnetics and the sensitivity of the energy confinement to the presence of symmetry-breaking magnetic fluctuations.« less

Dynamics of a high-current relativistic electron beam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strelkov, P. S., E-mail: strelkov@fpl.gpi.ru; Tarakanov, V. P., E-mail: karat@gmail.ru; Ivanov, I. E., E-mail: iei@fpl.gpi.ru

2015-06-15

The dynamics of a high-current relativistic electron beam is studied experimentally and by numerical simulation. The beam is formed in a magnetically insulated diode with a transverse-blade explosive-emission cathode. It is found experimentally that the radius of a 500-keV beam with a current of 2 kA and duration of 500 ns decreases with time during the beam current pulse. The same effect was observed in numerical simulations. This effect is explained by a change in the shape of the cathode plasma during the current pulse, which, according to calculations, leads to a change in the beam parameters, such as themore » electron pitch angle and the spread over the longitudinal electron momentum. These parameters are hard to measure experimentally; however, the time evolution of the radial profile of the beam current density, which can be measured reliably, coincides with the simulation results. This allows one to expect that the behavior of the other beam parameters also agrees with numerical simulations.« less

A Study of Pulse Shape Evolution and X-Ray Reprocessing in Her X-1

NASA Technical Reports Server (NTRS)

Cushman, Paula P.

1998-01-01

This study focused on the pulse shape evolution and spectral properties of the X-ray binary Her X-1 with regard to the well known 35-day cycle of Her X-1. A follow-up set of RXTE observations has been conducted in RXTE AO-2 phase and the two observation sets are being analyzed together. We presented results of early analysis of pulse shape evolution in "Proceedings of the Fourth Compton Symposium". More advanced analysis was presented at the HEAD meeting in November, 1997 in Estes Park, Colorado. A related study of the 35-day cycle using RXTE/ASM data, which laid out the overall picture within which the more detailed PCA observations could be placed has also been conducted. The results of this study have been published. A pair of papers on the detailed pulse evolution and the spectral/color evolution are currently being prepared for publication. Some of the significant results of this study have been a confirmation of the detailed pulse profile changes at the end of the Main High state in HerX-1 first observed by GINGA, observations of the pulse evolution in several Short High states which agree with the pulse evolution pattern predicted using a disk occultation model, observation of a systematic lengthening of the eclipse egress during the Main High state of the 35-day phase and observation of a new type of extended eclipse ingress during which pulsations cease to observed during the Short High state.

Multi-omics Analysis Sheds Light on the Evolution and the Intracellular Lifestyle Strategies of Spotted Fever Group Rickettsia spp.

PubMed

El Karkouri, Khalid; Kowalczewska, Malgorzata; Armstrong, Nicholas; Azza, Said; Fournier, Pierre-Edouard; Raoult, Didier

2017-01-01

Arthropod-borne Rickettsia species are obligate intracellular bacteria which are pathogenic for humans. Within this genus, Rickettsia slovaca and Rickettsia conorii cause frequent and potentially severe infections, whereas Rickettsia raoultii and Rickettsia massiliae cause rare and milder infections. All four species belong to spotted fever group (SFG) rickettsiae. However, R. slovaca and R. raoultii cause scalp eschar and neck lymphadenopathy (SENLAT) and are mainly associated with Dermacentor ticks, whereas the other two species cause Mediterranean spotted fever (MSF) and are mainly transmitted by Rhipicephalus ticks. To identify the potential genes and protein profiles and to understand the evolutionary processes that could, comprehensively, relate to the differences in virulence and pathogenicity observed between these four species, we compared their genomes and proteomes. The virulent and milder agents displayed divergent phylogenomic evolution in two major clades, whereas either SENLAT or MSF disease suggests a discrete convergent evolution of one virulent and one milder agent, despite their distant genetic relatedness. Moreover, the two virulent species underwent strong reductive genomic evolution and protein structural variations, as well as a probable loss of plasmid(s), compared to the two milder species. However, an abundance of mobilome genes was observed only in the less pathogenic species. After infecting Xenopus laevis cells, the virulent agents displayed less up-regulated than down-regulated proteins, as well as less number of identified core proteins. Furthermore, their similar and distinct protein profiles did not contain some genes (e.g., omp A/B and rick A) known to be related to rickettsial adhesion, motility and/or virulence, but may include other putative virulence-, antivirulence-, and/or disease-related proteins. The identified evolutionary forces herein may have a strong impact on intracellular expressions and strategies in these rickettsiae, and that may contribute to the emergence of distinct virulence and diseases in humans. Thus, the current multi-omics data provide new insights into the evolution and fitness of SFG virulence and pathogenicity, and intracellular pathogenic bacteria.

The layered evolution of fabric and microstructure of snow at Point Barnola, Central East Antarctica

NASA Astrophysics Data System (ADS)

Calonne, Neige; Montagnat, Maurine; Matzl, Margret; Schneebeli, Martin

2017-02-01

Snow fabric, defined as the distribution of the c-axis orientations of the ice crystals in snow, is poorly known. So far, only one study exits that measured snow fabric based on a statistically representative technique. This recent study has revealed the impact of temperature gradient metamorphism on the evolution of fabric in natural snow, based on cold laboratory experiments. On polar ice sheets, snow properties are currently investigated regarding their strong variability in time and space, notably because of their potential influence on firn processes and consequently on ice core analysis. Here, we present measurements of fabric and microstructure of snow from Point Barnola, East Antarctica (close to Dome C). We analyzed a snow profile from 0 to 3 m depth, where temperature gradients occur. The main contributions of the paper are (1) a detailed characterization of snow in the upper meters of the ice sheet, especially by providing data on snow fabric, and (2) the study of a fundamental snow process, never observed up to now in a natural snowpack, namely the role of temperature gradient metamorphism on the evolution of the snow fabric. Snow samples were scanned by micro-tomography to measure continuous profiles of microstructural properties (density, specific surface area and pore thickness). Fabric analysis was performed using an automatic ice texture analyzer on 77 representative thin sections cut out from the samples. Different types of snow fabric could be identified and persist at depth. Snow fabric is significantly correlated with snow microstructure, pointing to the simultaneous influence of temperature gradient metamorphism on both properties. We propose a mechanism based on preferential grain growth to explain the fabric evolution under temperature gradients. Our work opens the question of how such a layered profile of fabric and microstructure evolves at depth and further influences the physical and mechanical properties of snow and firn. More generally, it opens the way to further studies on the influence of the snow fabric in snow processes related to anisotropic properties of ice such as grain growth, mechanical response, electromagnetic behavior.

Turbulent mixing within the Kuroshio in the Tokara Strait

NASA Astrophysics Data System (ADS)

Tsutsumi, Eisuke; Matsuno, Takeshi; Lien, Ren-Chieh; Nakamura, Hirohiko; Senjyu, Tomoharu; Guo, Xinyu

2017-09-01

Turbulent mixing and background current were observed using a microstructure profiler and acoustic Doppler current profilers in the Tokara Strait, where many seamounts and small islands exist within the route of the Kuroshio in the East China Sea. Vertical structure and water properties of the Kuroshio were greatly modified downstream from shallow seamounts. In the lee of a seamount crest at 200 m depth, the modification made the flow tend to shear instability, and the vertical eddy diffusivity is enhanced by nearly 100 times that of the upstream site, to Kρ ˜ O(10-3)-O(10-2) m2 s-1. A one-dimensional diffusion model using the observed eddy diffusivity reproduced the observed downstream evolution of the temperature-salinity profile. However, the estimated diffusion time-scale is at least 10 times longer than the observed advection time-scale. This suggests that the eddy diffusivity reaches to O(10-1) m2 s-1 in the vicinity of the seamount. At a site away from the abrupt topography, eddy diffusivity was also elevated to O(10-3) m2 s-1, and was associated with shear instability presumably induced by the Kuroshio shear and near-inertial internal-wave shear. Our study suggests that a better prediction of current, water-mass properties, and nutrients within the Kuroshio requires accurate understanding and parameterization of flow-topography interaction such as internal hydraulics, the associated internal-wave processes, and turbulent mixing processes.

Advanced Applications of Next-Generation Sequencing Technologies to Orchid Biology.

PubMed

Yeh, Chuan-Ming; Liu, Zhong-Jian; Tsai, Wen-Chieh

2018-01-01

Next-generation sequencing technologies are revolutionizing biology by permitting, transcriptome sequencing, whole-genome sequencing and resequencing, and genome-wide single nucleotide polymorphism profiling. Orchid research has benefited from this breakthrough, and a few orchid genomes are now available; new biological questions can be approached and new breeding strategies can be designed. The first part of this review describes the unique features of orchid biology. The second part provides an overview of the current next-generation sequencing platforms, many of which are already used in plant laboratories. The third part summarizes the state of orchid transcriptome and genome sequencing and illustrates current achievements. The genetic sequences currently obtained will not only provide a broad scope for the study of orchid biology, but also serves as a starting point for uncovering the mystery of orchid evolution.

Revisiting the bulge-halo conspiracy - II. Towards explaining its puzzling dependence on redshift

NASA Astrophysics Data System (ADS)

Shankar, Francesco; Sonnenfeld, Alessandro; Grylls, Philip; Zanisi, Lorenzo; Nipoti, Carlo; Chae, Kyu-Hyun; Bernardi, Mariangela; Petrillo, Carlo Enrico; Huertas-Company, Marc; Mamon, Gary A.; Buchan, Stewart

2018-04-01

We carry out a systematic investigation of the total mass density profile of massive (log Mstar/M⊙ ˜ 11.5) early-type galaxies and its dependence on redshift, specifically in the range 0 ≲ z ≲ 1. We start from a large sample of Sloan Digital Sky Survey early-type galaxies with stellar masses and effective radii measured assuming two different profiles, de Vaucouleurs and Sérsic. We assign dark matter haloes to galaxies via abundance matching relations with standard ΛCDM profiles and concentrations. We then compute the total, mass-weighted density slope at the effective radius γ΄, and study its redshift dependence at fixed stellar mass. We find that a necessary condition to induce an increasingly flatter γ΄ at higher redshifts, as suggested by current strong lensing data, is to allow the intrinsic stellar profile of massive galaxies to be Sérsic and the input Sérsic index n to vary with redshift as n(z) ∝ (1 + z)δ, with δ ≲ -1. This conclusion holds irrespective of the input Mstar-Mhalo relation, the assumed stellar initial mass function (IMF), or even the chosen level of adiabatic contraction in the model. Secondary contributors to the observed redshift evolution of γ΄ may come from an increased contribution at higher redshifts of adiabatic contraction and/or bottom-light stellar IMFs. The strong lensing selection effects we have simulated seem not to contribute to this effect. A steadily increasing Sérsic index with cosmic time is supported by independent observations, though it is not yet clear whether cosmological hierarchical models (e.g. mergers) are capable of reproducing such a fast and sharp evolution.

Comparative modelling of lower hybrid current drive with two launcher designs in the Tore Supra tokamak

NASA Astrophysics Data System (ADS)

Nilsson, E.; Decker, J.; Peysson, Y.; Artaud, J.-F.; Ekedahl, A.; Hillairet, J.; Aniel, T.; Basiuk, V.; Goniche, M.; Imbeaux, F.; Mazon, D.; Sharma, P.

2013-08-01

Fully non-inductive operation with lower hybrid current drive (LHCD) in the Tore Supra tokamak is achieved using either a fully active multijunction (FAM) launcher or a more recent ITER-relevant passive active multijunction (PAM) launcher, or both launchers simultaneously. While both antennas show comparable experimental efficiencies, the analysis of stability properties in long discharges suggest different current profiles. We present comparative modelling of LHCD with the two different launchers to characterize the effect of the respective antenna spectra on the driven current profile. The interpretative modelling of LHCD is carried out using a chain of codes calculating, respectively, the global discharge evolution (tokamak simulator METIS), the spectrum at the antenna mouth (LH coupling code ALOHA), the LH wave propagation (ray-tracing code C3PO), and the distribution function (3D Fokker-Planck code LUKE). Essential aspects of the fast electron dynamics in time, space and energy are obtained from hard x-ray measurements of fast electron bremsstrahlung emission using a dedicated tomographic system. LHCD simulations are validated by systematic comparisons between these experimental measurements and the reconstructed signal calculated by the code R5X2 from the LUKE electron distribution. An excellent agreement is obtained in the presence of strong Landau damping (found under low density and high-power conditions in Tore Supra) for which the ray-tracing model is valid for modelling the LH wave propagation. Two aspects of the antenna spectra are found to have a significant effect on LHCD. First, the driven current is found to be proportional to the directivity, which depends upon the respective weight of the main positive and main negative lobes and is particularly sensitive to the density in front of the antenna. Second, the position of the main negative lobe in the spectrum is different for the two launchers. As this lobe drives a counter-current, the resulting driven current profile is also different for the FAM and PAM launchers.

Flow structure at an ice-covered river confluence

NASA Astrophysics Data System (ADS)

Martel, Nancy; Biron, Pascale; Buffin-Bélanger, Thomas

2017-04-01

River confluences are known to exhibit complex relationships between flow structure, sediment transport and bed-form development. Flow structure at these sites is influenced by the junction angle, the momentum flux ratio (Mr) and bed morphology. In cold regions where an ice cover is present for most of the winter period, the flow structure is also likely affected by the roughness effect of the ice. However, very few studies have examined the impact of an ice cover on the flow structure at a confluence. The aims of this study are (1) to describe the evolution of an ice cover at a river confluence and (2) to characterize and compare the flow structure at a river confluence with and without an ice cover. The field site is a medium-sized confluence (around 40 m wide) between the Mit is and Neigette Rivers in the Bas-Saint-Laurent region, Quebec (Canada). The confluence was selected because a thick ice cover is present for most of the winter allowing for safe field work. Two winter field campaigns were conducted in 2015 and 2016 to obtain ice cover measurements in addition to hydraulic and morphological measurements. Daily monitoring of the evolution of the ice cover was made with a Reconyx camera. Velocity profiles were collected with an acoustic Doppler current profiler (ADCP) to reconstruct the three-dimensional flow structure. Time series of photographs allow the evolution of the ice cover to be mapped, linking the processes leading to the formation of the primary ice cover for each year. The time series suggests that these processes are closely related with both confluence flow zones and hydro-climatic conditions. Results on the thickness of the ice cover from in situ measurements reveal that the ice thickness tends to be thinner at the center of the confluence where high turbulent exchanges take place. Velocity measurements reveal that the ice cover affects velocity profiles by moving the highest velocities towards the center of the profiles. A spatio-temporal conceptual model is presented to illustrate the main differences on the three-dimensional flow structure at the river confluence with and without the ice cover.

STIRRED, NOT CLUMPED: EVOLUTION OF TEMPERATURE PROFILES IN THE OUTSKIRTS OF GALAXY CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Avestruz, Camille; Nagai, Daisuke; Lau, Erwin T., E-mail: avestruz@uchicago.edu

Recent statistical X-ray measurements of the intracluster medium (ICM) indicate that gas temperature profiles in the outskirts of galaxy clusters deviate from self-similar evolution. Using a mass-limited sample of galaxy clusters from cosmological hydrodynamical simulations, we show that the departure from self-similarity can be explained by non-thermal gas motions driven by mergers and accretion. Contrary to previous claims, gaseous substructures only play a minor role in the temperature evolution in cluster outskirts. A careful choice of halo overdensity definition in self-similar scaling mitigates these departures. Our work highlights the importance of non-thermal gas motions in ICM evolution and the usemore » of galaxy clusters as cosmological probes.« less

Dependency of Tearing Mode Stability on Current and Pressure Profiles in DIII-D Hybrid Discharges

NASA Astrophysics Data System (ADS)

Kim, K.; Park, J. M.; Murakami, M.; La Haye, R. J.; Na, Y.-S.; SNU/ORAU; ORNL; Atomics, General; SNU; DIII-D Team

2016-10-01

Understanding the physics of the onset and evolution of tearing modes (TMs) in tokamak plasmas is important for high- β steady-state operation. Based on DIII-D steady-state hybrid experiments with accurate equilibrium reconstruction and well-measured plasma profiles, the 2/1 tearing mode can be more stable with increasing local current and pressure gradient at rational surface and with lower pressure peaking and plasma inductance. The tearing stability index Δ', estimated by the Rutherford equation with experimental mode growth rate was validated against Δ' calculated by linear eigenvalue solver (PEST3); preliminary comprehensive MHD modeling by NIMROD reproduced the TM onset reasonably well. We present a novel integrated modeling for the purpose of predicting TM onset in experiment by combining a model equilibrium reconstruction using IPS/FASTRAN, linear stability Δ' calculation using PEST3, and fitting formula for critical Δ' from NIMROD. Work supported in part by the US DoE under DE-AC05-06OR23100, DE-AC05-00OR22725, and DEFC02-04ER54698.

Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota

PubMed Central

Ellegaard, Kirsten M.; Engel, Philipp

2016-01-01

Interactions with microbes affect many aspects of animal biology, including immune system development, nutrition and health. In vertebrates, the gut microbiota is dominated by a small subset of phyla, but the species composition within these phyla is typically not conserved. Moreover, several recent studies have shown that bacterial species in the gut are composed of a multitude of strains, which frequently co-exist in their host, and may be host-specific. However, since the study of intra-species diversity is challenging, particularly in the setting of complex, host-associated microbial communities, our current understanding of the distribution, evolution and functional relevance of intra-species diversity in the gut is scarce. In order to unravel how genomic diversity translates into phenotypic diversity, community analyses going beyond 16S rRNA profiling, in combination with experimental approaches, are needed. Recently, the honeybee has emerged as a promising model for studying gut bacterial communities, particularly in terms of strain-level diversity. Unlike most other invertebrates, the honeybee gut is colonized by a remarkably consistent and specific core microbiota, which is dominated by only eight bacterial species. As for the vertebrate gut microbiota, these species are composed of highly diverse strains suggesting that similar evolutionary forces shape gut community structures in vertebrates and social insects. In this review, we outline current knowledge on the evolution and functional relevance of strain diversity within the gut microbiota, including recent insights gained from mammals and other animals such as the honeybee. We discuss methodological approaches and propose possible future avenues for studying strain diversity in complex bacterial communities. PMID:27708630

Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota.

PubMed

Ellegaard, Kirsten M; Engel, Philipp

2016-01-01

Interactions with microbes affect many aspects of animal biology, including immune system development, nutrition and health. In vertebrates, the gut microbiota is dominated by a small subset of phyla, but the species composition within these phyla is typically not conserved. Moreover, several recent studies have shown that bacterial species in the gut are composed of a multitude of strains, which frequently co-exist in their host, and may be host-specific. However, since the study of intra-species diversity is challenging, particularly in the setting of complex, host-associated microbial communities, our current understanding of the distribution, evolution and functional relevance of intra-species diversity in the gut is scarce. In order to unravel how genomic diversity translates into phenotypic diversity, community analyses going beyond 16S rRNA profiling, in combination with experimental approaches, are needed. Recently, the honeybee has emerged as a promising model for studying gut bacterial communities, particularly in terms of strain-level diversity. Unlike most other invertebrates, the honeybee gut is colonized by a remarkably consistent and specific core microbiota, which is dominated by only eight bacterial species. As for the vertebrate gut microbiota, these species are composed of highly diverse strains suggesting that similar evolutionary forces shape gut community structures in vertebrates and social insects. In this review, we outline current knowledge on the evolution and functional relevance of strain diversity within the gut microbiota, including recent insights gained from mammals and other animals such as the honeybee. We discuss methodological approaches and propose possible future avenues for studying strain diversity in complex bacterial communities.

Turbulence evolution and transport behavior during current ramp-up in ITER-like plasmas on DIII-D

DOE PAGES

McKee, George R.; Austin, Max E.; Boedo, Jose A.; ...

2017-07-12

Low-wavenumber density fluctuations exhibit unique characteristics during the current ramp-up phase of ITER-like discharges that can partially explain the challenges of correctly modeling transport behavior and predicting global plasma parameters during this period. A strong interaction takes place between the evolving transport, safety factor (q) and kinetic profiles as well as the appearance and evolution of low-order rational surfaces. Density fluctuations from 0.75 < ρ < 0.9 are transiently reduced to exceptionally low levels during early times and from 0.8 < ρ < 0.9 at late times in the ramp-up in a manner that is different from behavior observed duringmore » steady-state plasma conditions with similar values of q 95. Turbulence is suppressed as low-order-rational q-surfaces enter the plasma; the local electron temperature likewise exhibits transient increases during these periods of reduced fluctuations indicating changes in transport that impact temperature and consequently the evolution of current density and plasma inductance. These observations can explain discrepancies between CORSICA modelling and the higher electron temperature found previously over the outer half radius. Comparison of turbulence properties with time-varying linear growth rates with GYRO and GENE demonstrate qualitative consistency with measured fluctuation levels, but calculations don’t exhibit reduced growth rates near low-order rational surfaces, which is inconsistent with experimental observations. Here, this indicates a mechanism that can contribute to reconciling observed turbulence behavior with transport models, allowing for the development of more accurate predictive tools.« less

Turbulence evolution and transport behavior during current ramp-up in ITER-like plasmas on DIII-D

NASA Astrophysics Data System (ADS)

McKee, G. R.; Austin, M.; Boedo, J.; Bravenec, R.; Holland, C.; Jackson, G.; Luce, T. C.; Rhodes, T. L.; Rudakov, D.; Wang, G.; Yan, Z.; Zeng, L.; Zhao, Y.

2017-08-01

Low-wavenumber density fluctuations exhibit unique characteristics during the current ramp-up phase of ITER-like discharges that can partially explain the challenges of correctly modeling transport behavior and predicting global plasma parameters during this period. A strong interaction takes place between the evolving transport, safety factor (q) and kinetic profiles as well as the appearance and evolution of low-order rational surfaces. Density fluctuations from 0.75  <  ρ  <  0.9 are transiently reduced to exceptionally low levels during early times and from 0.8  <  ρ  <  0.9 at late times in the ramp-up in a manner that is different from behavior observed during steady-state plasma conditions with similar values of q 95. Turbulence is suppressed as low-order-rational q-surfaces enter the plasma; the local electron temperature likewise exhibits transient increases during these periods of reduced fluctuations indicating changes in transport that impact temperature and consequently the evolution of current density and plasma inductance. These observations can explain discrepancies between CORSICA modelling and the higher electron temperature found previously over the outer half radius. Comparison of turbulence properties with time-varying linear growth rates with GYRO and GENE demonstrate qualitative consistency with measured fluctuation levels, but calculations don’t exhibit reduced growth rates near low-order rational surfaces, which is inconsistent with experimental observations. This indicates a mechanism that can contribute to reconciling observed turbulence behavior with transport models, allowing for the development of more accurate predictive tools.

Molecular evolution and expression profile of the chemerine encoding gene RARRES2 in baboon and chimpanzee.

PubMed

González-Alvarez, Rafael; Garza-Rodríguez, María de Lourdes; Delgado-Enciso, Iván; Treviño-Alvarado, Víctor Manuel; Canales-Del-Castillo, Ricardo; Martínez-De-Villarreal, Laura Elia; Lugo-Trampe, Ángel; Tejero, María Elizabeth; Schlabritz-Loutsevitch, Natalia E; Rocha-Pizaña, María Del Refugio; Cole, Shelley A; Reséndez-Pérez, Diana; Moises-Alvarez, Mario; Comuzzie, Anthony G; Barrera-Saldaña, Hugo Alberto; Garza-Guajardo, Raquel; Barboza-Quintana, Oralia; Rodríguez-Sánchez, Irám Pablo

2015-06-12

Chemerin, encoded by the retinoic acid receptor responder 2 (RARRES2) gene is an adipocytesecreted protein with autocrine/paracrine functions in adipose tissue, metabolism and inflammation with a recently described function in vascular tone regulation, liver, steatosis, etc. This molecule is believed to represent a critical endocrine signal linking obesity to diabetes. There are no data available regarding evolution of RARRES2 in non-human primates and great apes. Expression profile and orthology in RARRES2 genes are unknown aspects in the biology of this multigene family in primates. Thus; we attempt to describe expression profile and phylogenetic relationship as complementary knowledge in the function of this gene in primates. To do that, we performed A RT-PCR from different tissues obtained during necropsies. Also we tested the hypotheses of positive evolution, purifying selection, and neutrality. And finally a phylogenetic analysis was made between primates RARRES2 protein. RARRES2 transcripts were present in liver, lung, adipose tissue, ovary, pancreas, heart, hypothalamus and pituitary tissues. Expression in kidney and leukocytes were not detectable in either species. It was determined that the studied genes are orthologous. RARRES2 evolution fits the hypothesis of purifying selection. Expression profiles of the RARRES2 gene are similar in baboons and chimpanzees and are also phylogenetically related.

Evolutionary diversity of bile salts in reptiles and mammals, including analysis of ancient human and extinct giant ground sloth coprolites

PubMed Central

2010-01-01

Background Bile salts are the major end-metabolites of cholesterol and are also important in lipid and protein digestion and in influencing the intestinal microflora. We greatly extend prior surveys of bile salt diversity in both reptiles and mammals, including analysis of 8,000 year old human coprolites and coprolites from the extinct Shasta ground sloth (Nothrotherium shastense). Results While there is significant variation of bile salts across species, bile salt profiles are generally stable within families and often within orders of reptiles and mammals, and do not directly correlate with differences in diet. The variation of bile salts generally accords with current molecular phylogenies of reptiles and mammals, including more recent groupings of squamate reptiles. For mammals, the most unusual finding was that the Paenungulates (elephants, manatees, and the rock hyrax) have a very different bile salt profile from the Rufous sengi and South American aardvark, two other mammals classified with Paenungulates in the cohort Afrotheria in molecular phylogenies. Analyses of the approximately 8,000 year old human coprolites yielded a bile salt profile very similar to that found in modern human feces. Analysis of the Shasta ground sloth coprolites (approximately 12,000 years old) showed the predominant presence of glycine-conjugated bile acids, similar to analyses of bile and feces of living sloths, in addition to a complex mixture of plant sterols and stanols expected from an herbivorous diet. Conclusions The bile salt synthetic pathway has become longer and more complex throughout vertebrate evolution, with some bile salt modifications only found within single groups such as marsupials. Analysis of the evolution of bile salt structures in different species provides a potentially rich model system for the evolution of a complex biochemical pathway in vertebrates. Our results also demonstrate the stability of bile salts in coprolites preserved in arid climates, suggesting that bile salt analysis may have utility in selected paleontological research. PMID:20444292

An overview on genome organization of marine organisms.

PubMed

Costantini, Maria

2015-12-01

In this review we will concentrate on some general genome features of marine organisms and their evolution, ranging from vertebrate to invertebrates until unicellular organisms. Before genome sequencing, the ultracentrifugation in CsCl led to high resolution of mammalian DNA (without seeing at the sequence). The analytical profile of human DNA showed that the vertebrate genome is a mosaic of isochores, typically megabase-size DNA segments that belong in a small number of families characterized by different GC levels. The recent availability of a number of fully sequenced genomes allowed mapping very precisely the isochores, based on DNA sequences. Since isochores are tightly linked to biological properties such as gene density, replication timing and recombination, the new level of detail provided by the isochore map helped the understanding of genome structure, function and evolution. This led the current level of knowledge and to further insights. Copyright © 2015. Published by Elsevier B.V.

Role of Magnetosonic Solitons in Perpendicular Collisionless Shock Reformation

NASA Astrophysics Data System (ADS)

Gueroult, Renaud; Ohsawa, Yukiharu; Fisch, Nathaniel J.

2017-03-01

The nature of the magnetic structure arising from ion specular reflection in shock compression studies is examined by means of 1D particle-in-cell simulations. Propagation speed, field profiles, and supporting currents for this magnetic structure are shown to be consistent with a magnetosonic soliton. Coincidentally, this structure and its evolution are typical of foot structures observed in perpendicular shock reformation. To reconcile these two observations, we propose, for the first time, that shock reformation can be explained as the result of the formation, growth, and subsequent transition to a supercritical shock of a magnetosonic soliton. This argument is further supported by the remarkable agreement found between the period of the soliton evolution cycle and classical reformation results. This new result suggests that the unique properties of solitons can be used to shed new light on the long-standing issue of shock nonstationarity and its role on particle acceleration.

Structural and Depositional Evolution of the Stevenson Basin, a Gulf of Alaska Forearc Basin: Insights from Legacy Seismic and Borehole Data

NASA Astrophysics Data System (ADS)

Bhattacharya, R.; Liberty, L. M.; Almeida, R. V.; Hubbard, J.

2016-12-01

We explore the structural and depositional evolution of the Stevenson Basin, Gulf of Alaska from a dense network of 2-D marine seismic profiles that span the Gulf of Alaska continental margin. The grid of 71 seismic profiles was acquired as part of a 1975 Mineral Management Services (MMS) exploration project to assess basin architecture along the Alaska continental shelf. We obtained unmigrated and stacked seismic profiles in TIFF format. We converted the data to SEGY format and migrated each profile. Within the Stevenson Basin, we identify key seismic horizons, including the regional Eocene-Miocene unconformity, that provide insights into its depositional and structural history. Using these observations combined with stacking velocities, sonic logs from wells, and refraction velocities from the Edge profile of Ye et al. (1997), we develop a local 3D velocity model that we use to depth-convert the seismic reflection profiles. By using ties to >2.5 km deep exploration wells, we note the Stevenson Basin is one of many Eocene and younger depocenters that span the forearc between Kodiak and Prince William Sound. Well logs and seismic data suggest basal strata consist of Eocene sediments than are unconformably overlain by Neogene and younger strata. Faults that breach the sea floor suggest active deformation within and at the bounds of this basin, including on new faults that do not follow any pre-existing structural trends. This assessment is consistent with slip models that place tsunamigenic faults that ruptured during the 1964 Great Alaska earthquake in the vicinity of the basin. The catalog of faults, their slip history and the depositional evolution of the Stevenson Basin, all suggest that the basin evolution may be controlled by heterogeneities along the incoming plate.

Predicting Node Degree Centrality with the Node Prominence Profile

PubMed Central

Yang, Yang; Dong, Yuxiao; Chawla, Nitesh V.

2014-01-01

Centrality of a node measures its relative importance within a network. There are a number of applications of centrality, including inferring the influence or success of an individual in a social network, and the resulting social network dynamics. While we can compute the centrality of any node in a given network snapshot, a number of applications are also interested in knowing the potential importance of an individual in the future. However, current centrality is not necessarily an effective predictor of future centrality. While there are different measures of centrality, we focus on degree centrality in this paper. We develop a method that reconciles preferential attachment and triadic closure to capture a node's prominence profile. We show that the proposed node prominence profile method is an effective predictor of degree centrality. Notably, our analysis reveals that individuals in the early stage of evolution display a distinctive and robust signature in degree centrality trend, adequately predicted by their prominence profile. We evaluate our work across four real-world social networks. Our findings have important implications for the applications that require prediction of a node's future degree centrality, as well as the study of social network dynamics. PMID:25429797

Using High and Low Resolution Profiles of CO2 and CH4 Measured with AirCores to Evaluate Transport Models and Atmospheric Columns Retrieved from Space

NASA Astrophysics Data System (ADS)

Membrive, O.; Crevoisier, C. D.; Sweeney, C.; Hertzog, A.; Danis, F.; Picon, L.; Engel, A.; Boenisch, H.; Durry, G.; Amarouche, N.

2015-12-01

Over the past decades many methods have been developed to monitor the evolution of greenhouse gases (GHG): ground networks (NOAA, ICOS, TCCON), aircraft campaigns (HIPPO, CARIBIC, Contrail…), satellite observations (GOSAT, IASI, AIRS…). Nevertheless, precise and regular vertical profile measurements are currently still missing from the observing system. To address this need, an original and innovative atmospheric sampling system called AirCore has been developed at NOAA (Karion et al. 2010). This new system allows balloon measurements of GHG vertical profiles from the surface up to 30 km. New versions of this instrument have been developed at LMD: a high-resolution version "AirCore-HR" that differs from other AirCores by its high vertical resolution and two "light" versions (lower resolution) aiming to be flown under meteorological balloon. LMD AirCores were flown on multi-instrument gondolas along with other independent instruments measuring CO2 and CH4 in-situ during the Strato Science balloon campaigns operated by the French space agency CNES in collaboration with the Canadian Space Agency in Timmins (Ontario, Canada) in August 2014 and 2015. First, we will present comparisons of the vertical profiles retrieved with various AirCores (LMD and Frankfurt University) to illustrate repeatability and impact of the vertical resolution as well as comparisons with independent in-situ measurements from other instruments (laser diode based Pico-SDLA). Second, we will illustrate the usefulness of AirCore measurements in the upper troposphere and stratosphere for validating and interpreting vertical profiles from atmospheric transport models as well as observations of total and partial column of methane and carbon dioxide from several current and future spaceborne missions such as: ACE-FTS, IASI and GOSAT.

Pulse Shape Evolution, HER X-1

NASA Technical Reports Server (NTRS)

VanParadijs, Johannes A.

1998-01-01

This study focuses on the pulse shape evolution and spectral properties of the X-ray binary Her X-1 with regard to the well known 35-day cycle of Her X-1. A follow-up set of RXTE observations has been conducted in RXTE AO-2 phase and the two observation sets are being analyzed together. We presented results of early analysis of pulse shape evolution in "Proceedings of the Fourth Compton Symposium." More advanced analysis was presented at the HEAD meeting in November, 1997 in Estes Park, Colorado. A related study of the 35-day cycle using RXTE/ASM data, which laid out the overall picture within which the more detailed PCA observations could be placed has also been conducted. The results of this study have been published in The Astrophysical Journal, vol. 510, 974. A pair of papers on the detailed pulse evolution and the spectral/color evolution are currently being prepared for publication. Some of the significant results of this study have been a confirmation of the detailed pulse profile changes at the end of the Main High state in Her X-1 first observed by GINGA, observations of the pulse evolution in several Short High states which agree with the pulse evolution pattern predicted using a disk occultation model in the PhD Thesis of Scott 1993, observation of a systematic lengthening of the eclipse egress during the Main High state of the 35-day phase and observation of a new type of extended eclipse ingress during which pulsations cease to observed during the Short High state.

Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul

PubMed Central

Mystkowska, Katarzyna; Kras, Marta; Dudek, Magdalena

2016-01-01

The location of possible glacial refugia of six Apostasioideae representatives is estimated based on ecological niche modeling analysis. The distribution of their suitable niches during the last glacial maximum (LGM) is compared with their current potential and documented geographical ranges. The climatic factors limiting the studied species occurrences are evaluated and the niche overlap between the studied orchids is assessed and discussed. The predicted niche occupancy profiles and reconstruction of ancestral climatic tolerances suggest high level of phylogenetic niche conservatism within Apostasioideae. PMID:27635348

Dynamics of Dwarf Galaxies Disfavor Stellar-Mass Black Holes as Dark Matter.

PubMed

Koushiappas, Savvas M; Loeb, Abraham

2017-07-28

We study the effects of black hole dark matter on the dynamical evolution of stars in dwarf galaxies. We find that mass segregation leads to a depletion of stars in the center of dwarf galaxies and the appearance of a ring in the projected stellar surface density profile. Using Segue 1 as an example we show that current observations of the projected surface stellar density rule out at the 99.9% confidence level the possibility that more than 6% of the dark matter is composed of black holes with a mass of few tens of solar masses.

Observing the Vertical Extent of the Urban Boundary Layer Over Jersey City, NJ: A Diurnal and Seasonal Analysis

NASA Astrophysics Data System (ADS)

Dempsey, M. J.; Booth, J.; Arend, M.; Melecio-Vazquez, D.; Gonzalez, J.

2015-12-01

The atmospheric boundary remains one of the more difficult components of the climate system to classify. One of the most important characteristics is the boundary layer height, especially in urban settings. The current study examines the boundary layer height using the the New York City Meteorological Network or NYCMetNet. NYCMetNet is a network of weather stations, which report meteorological conditions in and around New York City, as part of the Optical Remote Sensing Laboratory of The City College of New York (ORSL). Of interest to this study is the data obtained from wind profiler station LSC01. The 915 MHz wind profiler is located 30m above the ground on the roof of the Liberty Science Center in Jersey City, NJ. It is a Vaisala Wind Profiler LAP 3000 with a wavelength of ~34cm, which means that the instrument responds primarily to Bragg backscattering. Can a seasonal urban boundary layer climatology be extrapolated from the data obtained from the wind profiler? What is the timing of boundary layer evolution and collapse over Jersey City? How effective is the profiler under cloudy skies and even in light rain or snow? This study examines the entire time period covered by the wind profile (2007 to present) and selects a series of clear days and a series of cloudy days. The top of the urban boundary layer is subjectively located from each half hour time stamp of signal to noise values. The urban boundary layer heights are recorded for clear and then cloudy days. Then the days are sorted seasonally (DJF, MAM, JJA, SON). A seasonal mean is calculated for every half hour time step. Finally a time series of seasonal urban boundary layer heights is constructed, and the timing of the urban boundary layer height maximum and time evolution and collapse of the boundary layer are generalized. A comparison is made against urban boundary layer heights obtained from Modern-Era Retrospective Analysis For Research And Applications (MERRA).

Electric currents in the subsolar region of the Venus lower ionosphere

NASA Technical Reports Server (NTRS)

Cole, K. D.; Hoegy, W. R.

1994-01-01

The ion and electron momentum equations, along with Ampere's law, are solved for the ion and electron drift velocities and the electric field in the subsolar Venus ionosphere, assuming a partially ionized gas and a single ion species having the ion mean mass. All collision terms among the ions, electrons and neutral particles are retained in the equations. A general expression for the evolution of the magnetic field is derived and compared with earlier expressions. Subsolar region data in the altitude range 150-300 km from the Pioneer Venus Orbiter are used to calculate altitude profiles of the components of the current due to the electric field, gradients of pressure, and gravity. Altitude profiles of the ion and electron velocities as well as the electric field, electrodynamic heating, and the energy density are determined. Only orbits having a complete set of measured plasma temperatures and densities, neutral densities, and magnetic field were considered for analysis; the results are shown only for orbit 202. The vertical velocity at altitudes above 220 km is upgoing for orbit 202. This result is consistent with observations of molecular ions at high altitudes and of plasma flow to the nightside, both of which require upward velocity of ions from the dayside ionosphere. Above about 230 km the momentum equations are extremely sensitive to the altitude profiles of density, temperature, and magnetic field.

In situ X-ray near-edge absorption spectroscopy investigation of the state of charge of all-vanadium redox flow batteries.

PubMed

Jia, Chuankun; Liu, Qi; Sun, Cheng-Jun; Yang, Fan; Ren, Yang; Heald, Steve M; Liu, Yadong; Li, Zhe-Fei; Lu, Wenquan; Xie, Jian

2014-10-22

Synchrotron-based in situ X-ray near-edge absorption spectroscopy (XANES) has been used to study the valence state evolution of the vanadium ion for both the catholyte and anolyte in all-vanadium redox flow batteries (VRB) under realistic cycling conditions. The results indicate that, when using the widely used charge-discharge profile during the first charge process (charging the VRB cell to 1.65 V under a constant current mode), the vanadium ion valence did not reach V(V) in the catholyte and did not reach V(II) in the anolyte. Consequently, the state of charge (SOC) for the VRB cell was only 82%, far below the desired 100% SOC. Thus, such incompletely charged mix electrolytes results in not only wasting the electrolytes but also decreasing the cell performance in the following cycles. On the basis of our study, we proposed a new charge-discharge profile (first charged at a constant current mode up to 1.65 V and then continuously charged at a constant voltage mode until the capacity was close to the theoretical value) for the first charge process that achieved 100% SOC after the initial charge process. Utilizing this new charge-discharge profile, the theoretical charge capacity and the full utilization of electrolytes has been achieved, thus having a significant impact on the cost reduction of the electrolytes in VRB.

Structure, distribution, and evolution history of the Early Holocene erosional mud ridge system on the inner East China Sea shelf near the Yangtze River estuary

NASA Astrophysics Data System (ADS)

Feng, Zhibing; Liu, Baohua; Zhao, Yuexia; Li, Xishuang; Dada, Olusegun A.; Jiang, Li; Si, Shaokun

2017-04-01

Utilizing the collected high-resolution seismic dataset and accompanying borehole and bathymetric data, we systematically evaluated the morphology, architecture, sedimentology, and evolution of erosional mud ridges within the inner East China Sea (ECS) shelf. We identified 20 mud ridges, i.e., seismic reflection profile crossings of exposed or buried mud ridges, which are 3.0-30.1 km in width and 2.5-17.3 m in height. The mud ridges are composed predominantly of gray clayey silt, and on seismic profiles contain parallel to subparallel reflectors. They formed around 10-12 ka BP within an estuarine environment. Scouring features of some mud ridges on the eastern part of the study area can be recognized. Consideration of the relative positions of mud ridges, together with the topographical features, enables us to map four linear mud ridges (LMRs). The SE-NW oriented LMRs are > 50 km in length, 3.0-9.5 km in width and running parallel to each other. They also display asymmetric shapes, with steeper slopes to the SW. The eastern segments of some LMRs are exposed on the present seafloor whereas other segments are mainly overlain by the mid- and late Holocene strata. Since the LMRs share similarities with the modern tidal sand ridges in shape and orientation, we hypothesize that they are formed under a uniform tidal current. Seismic data highlight that the internal reflectors of sand ridges consist of dipping clinoforms and are significantly different from LMRs, a feature which is largely due to the difference in grain-size composition of sediments between the inner and mid-outer ECS shelf. The mid- to outer ECS shelf is capped by coarser-grained sediments (i.e., medium to fine-grained), which were reworked and deposited at locations near the erosional areas under a polycyclic tidal current, thus forming multiphase sand ridges. However, fine-grained sediments (i.e., silty clay and clayey silt) overlain on the inner ECS shelf with light mass were carried far away from the erosional areas by the tidal currents, and the relict mud ridges were built. Evidence shows that the LMRs were formed by the early Holocene strata being scoured by a persistent southeasterly flowing current during 8-10 ka BP. The evolution of the LMRs occurred in three stages: (a) formation of the transgressional strata at 10-12 ka BP, (b) strong trough erosion at 8-10 ka BP, and (c) local adjustment (i.e., local erosion slightly and preservation) after 8 ka BP.

Plasma boundary shape control and real-time equilibrium reconstruction on NSTX-U

DOE PAGES

Boyer, M. D.; Battaglia, D. J.; Mueller, D.; ...

2018-01-25

Here, the upgrade to the National Spherical Torus eXperiment (NSTX-U) included two main improvements: a larger center-stack, enabling higher toroidal field and longer pulse duration, and the addition of three new tangentially aimed neutral beam sources, which increase available heating and current drive, and allow for flexibility in shaping power, torque, current, and particle deposition profiles. To best use these new capabilities and meet the high-performance operational goals of NSTX-U, major upgrades to the NSTX-U control system (NCS) hardware and software have been made. Several control algorithms, including those used for real-time equilibrium reconstruction and shape control, have been upgradedmore » to improve and extend plasma control capabilities. As part of the commissioning phase of first plasma operations, the shape control system was tuned to control the boundary in both inner-wall limited and diverted discharges. It has been used to accurately track the requested evolution of the boundary (including the size of the inner gap between the plasma and central solenoid, which is a challenge for the ST configuration), X-point locations, and strike point locations, enabling repeatable discharge evolutions for scenario development and diagnostic commissioning.« less

Plasma boundary shape control and real-time equilibrium reconstruction on NSTX-U

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boyer, M. D.; Battaglia, D. J.; Mueller, D.

Here, the upgrade to the National Spherical Torus eXperiment (NSTX-U) included two main improvements: a larger center-stack, enabling higher toroidal field and longer pulse duration, and the addition of three new tangentially aimed neutral beam sources, which increase available heating and current drive, and allow for flexibility in shaping power, torque, current, and particle deposition profiles. To best use these new capabilities and meet the high-performance operational goals of NSTX-U, major upgrades to the NSTX-U control system (NCS) hardware and software have been made. Several control algorithms, including those used for real-time equilibrium reconstruction and shape control, have been upgradedmore » to improve and extend plasma control capabilities. As part of the commissioning phase of first plasma operations, the shape control system was tuned to control the boundary in both inner-wall limited and diverted discharges. It has been used to accurately track the requested evolution of the boundary (including the size of the inner gap between the plasma and central solenoid, which is a challenge for the ST configuration), X-point locations, and strike point locations, enabling repeatable discharge evolutions for scenario development and diagnostic commissioning.« less

MAVEN - Mars Atmosphere and Volatile EvolutioN Mission

NASA Technical Reports Server (NTRS)

Grebowsky, Joseph M.; Jakosky, Bruce M.

2011-01-01

NASA's MAVEN mission (to be launched in late 2013) is the first mission to Mars devoted to sampling all of the upper atmosphere neutral and plasma environments, including the well-mixed atmosphere, the exosphere, ionosphere, outer magnetosphere and near-Mars solar wind. It will fill in some measurement gaps remaining from the successful Mars Global Surveyor and the on-going Mars Express missions. The primary science objectives of MAVEN are: 1. Provide a comprehensive picture of the present state of the upper atmosphere and ionosphere of Mars; 2. Understand the processes controlling the present state; and 3. Determine how loss of volatiles to outer space in the present epoch varies with changing solar condition - EUY, solar wind and interplanetary magnetic field measurements will provide the varying solar energy inputs into the system. Knowing how these processes respond to the Sun's energy inputs in the current epoch will provide a framework for projecting atmospheric processes back in time to profile MARS' atmospheric evolution and to explore "where the water went", A description will be given of the science objectives, the instruments, and the current status of the project, emphasizing the value of having collaborations between the MAVEN project and the Mars upper atmosphere science community.

Plasma boundary shape control and real-time equilibrium reconstruction on NSTX-U

NASA Astrophysics Data System (ADS)

Boyer, M. D.; Battaglia, D. J.; Mueller, D.; Eidietis, N.; Erickson, K.; Ferron, J.; Gates, D. A.; Gerhardt, S.; Johnson, R.; Kolemen, E.; Menard, J.; Myers, C. E.; Sabbagh, S. A.; Scotti, F.; Vail, P.

2018-03-01

The upgrade to the National Spherical Torus eXperiment (NSTX-U) included two main improvements: a larger center-stack, enabling higher toroidal field and longer pulse duration, and the addition of three new tangentially aimed neutral beam sources, which increase available heating and current drive, and allow for flexibility in shaping power, torque, current, and particle deposition profiles. To best use these new capabilities and meet the high-performance operational goals of NSTX-U, major upgrades to the NSTX-U control system (NCS) hardware and software have been made. Several control algorithms, including those used for real-time equilibrium reconstruction and shape control, have been upgraded to improve and extend plasma control capabilities. As part of the commissioning phase of first plasma operations, the shape control system was tuned to control the boundary in both inner-wall limited and diverted discharges. It has been used to accurately track the requested evolution of the boundary (including the size of the inner gap between the plasma and central solenoid, which is a challenge for the ST configuration), X-point locations, and strike point locations, enabling repeatable discharge evolutions for scenario development and diagnostic commissioning.

Development of a wear model for the wheel profile optimisation on railway vehicles

NASA Astrophysics Data System (ADS)

Ignesti, M.; Innocenti, A.; Marini, L.; Meli, E.; Rindi, A.

2013-09-01

The modelling and the reduction of wear due to wheel-rail interaction is a fundamental aspect in the railway field, mainly correlated to safety, maintenance interventions and costs. In this work, the authors present two innovative wheel profiles, specifically designed with the aim of improving the wear and stability behaviour of the standard ORE S1002 wheel profile matched with the UIC60 rail profile canted at 1/20 rad, which represents the wheel-rail combination adopted in the Italian railway line. The two wheel profiles, conventionally named CD1 and DR2, have been developed by the authors in collaboration with Trenitalia S.p.A. The CD1 profile has been designed with the purpose of spreading the contact points in the flange zone on a larger area in order to reduce wear phenomena and having a constant equivalent conicity for small lateral displacements of the wheelset with respect to the centred position in the track. The DR2 wheel profile is instead designed to guarantee the same kinematic characteristics of the matching formed by ORE S1002 wheel profile and UIC60 rail profile with laying angle α p equal to 1/40 rad, widely common in European railways and characterised by good performances in both wear and kinematic behaviour. The evolution of wheel profiles due to wear has been evaluated through a wear model developed and validated by the authors in previous works. The wear model comprises two mutually interactive units: a vehicle model for the dynamic simulations and a model for the wear assessment. The whole model is based on a discrete process: each discrete step consists in one dynamic simulation and one profile update by means of the wear model while, within the discrete step, the profiles are supposed to be constant. The choice of an appropriate step is crucial in terms of precision and computational effort: the particular strategy adopted in the current work has been chosen for its capacity in representing the nonlinear wear evolution and for the low computational time required. In the present research, the investigated trainset is the passenger vehicle ALSTOM ALn 501 'Minuetto', which is usually equipped with the standard ORE S1002 wheel profile in Italian railways. The entire model has been simulated on a virtual track specifically developed to represent a statistical description of the whole Italian line. The data necessary to build the virtual track and the vehicle model were provided by Trenitalia S.p.A. and Rete Ferroviaria Italiana. The CD1 and DR2 wheel profiles, matched to the UIC60 rail with cant 1/20 rad, have shown a good behaviour in terms of wear resistance if compared with the old ORE S1002 wheel profile, consequently assuring a more uniform distribution of the removed material and a prolongation of the mean time between two subsequent re-profiling interventions.

Diffusion of Super-Gaussian Profiles

ERIC Educational Resources Information Center

Rosenberg, C.-J.; Anderson, D.; Desaix, M.; Johannisson, P.; Lisak, M.

2007-01-01

The present analysis describes an analytically simple and systematic approximation procedure for modelling the free diffusive spreading of initially super-Gaussian profiles. The approach is based on a self-similar ansatz for the evolution of the diffusion profile, and the parameter functions involved in the modelling are determined by suitable…

Linguistic Profiling of Language Disorders

ERIC Educational Resources Information Center

Karanth, Prathibha

2010-01-01

The history of the evolution of language assessments for children and adults with language disorders is described briefly. This is followed by a discussion on language assessment of the clinical population with an emphasis on linguistic profiling, illustrated through the Linguistic Profile Test. Discourse analysis, in particular, is highlighted…

Different evolution dynamics of vector solitons depending on their polarization states

NASA Astrophysics Data System (ADS)

Chen, Wei-Cheng; Chen, Guo-Jie

2014-03-01

There are three types of temporal evolution dynamics of vector solitons observed in a ring fiber laser with a semiconductor saturable absorption mirror (SESAM) as a mode-locker. It is found that the polarization property of vector solitons is an important factor for achieving different evolution dynamics. The vector soliton with a uniform polarization state across the whole pulse profile and zero polarization extinction ratio operates at a fundamental repetition rate with a single pulse profile. The elliptically polarized vector soliton with a larger polarization extinction ratio exhibits a harmonic pulse train. The soliton bunching with multi-peak structures exists between the above two states and shows elliptical polarization with a small polarization extinction ratio.

A data-assimilative ocean forecasting system for the Prince William sound and an evaluation of its performance during sound Predictions 2009

NASA Astrophysics Data System (ADS)

Farrara, John D.; Chao, Yi; Li, Zhijin; Wang, Xiaochun; Jin, Xin; Zhang, Hongchun; Li, Peggy; Vu, Quoc; Olsson, Peter Q.; Schoch, G. Carl; Halverson, Mark; Moline, Mark A.; Ohlmann, Carter; Johnson, Mark; McWilliams, James C.; Colas, Francois A.

2013-07-01

The development and implementation of a three-dimensional ocean modeling system for the Prince William Sound (PWS) is described. The system consists of a regional ocean model component (ROMS) forced by output from a regional atmospheric model component (the Weather Research and Forecasting Model, WRF). The ROMS ocean model component has a horizontal resolution of 1km within PWS and utilizes a recently-developed multi-scale 3DVAR data assimilation methodology along with freshwater runoff from land obtained via real-time execution of a digital elevation model. During the Sound Predictions Field Experiment (July 19-August 3, 2009) the system was run in real-time to support operations and incorporated all available real-time streams of data. Nowcasts were produced every 6h and a 48-h forecast was performed once a day. In addition, a sixteen-member ensemble of forecasts was executed on most days. All results were published at a web portal (http://ourocean.jpl.nasa.gov/PWS) in real time to support decision making.The performance of the system during Sound Predictions 2009 is evaluated. The ROMS results are first compared with the assimilated data as a consistency check. RMS differences of about 0.7°C were found between the ROMS temperatures and the observed vertical profiles of temperature that are assimilated. The ROMS salinities show greater discrepancies, tending to be too salty near the surface. The overall circulation patterns observed throughout the Sound are qualitatively reproduced, including the following evolution in time. During the first week of the experiment, the weather was quite stormy with strong southeasterly winds. This resulted in strong north to northwestward surface flow in much of the central PWS. Both the observed drifter trajectories and the ROMS nowcasts showed strong surface inflow into the Sound through the Hinchinbrook Entrance and strong generally northward to northwestward flow in the central Sound that was exiting through the Knight Island Passage and Montague Strait entrance. During the latter part of the second week when surface winds were light and southwesterly, the mean surface flow at the Hinchinbrook Entrance reversed to weak outflow and a cyclonic eddy formed in the central Sound. Overall, RMS differences between ROMS surface currents and observed HF radar surface currents in the central Sound were generally between 5 and 10cm/s, about 20-40% of the time mean current speeds.The ROMS reanalysis is then validated against independent observations. A comparison of the ROMS currents with observed vertical current profiles from moored ADCPs in the Hinchinbrook Entrance and Montague Strait shows good qualitative agreement and confirms the evolution of the near surface inflow/outflow at these locations described above. A comparison of the ROMS surface currents with drifter trajectories provided additional confirmation that the evolution of the surface flow described above was realistic. Forecasts of drifter locations had RMS errors of less than 10km for up to 36h. One and two-day forecasts of surface temperature, salinity and current fields were more skillful than persistence forecasts. In addition, ensemble mean forecasts were found to be slightly more skillful than single forecasts. Two case studies demonstrated the system's qualitative skill in predicting subsurface changes within the mixed layer measured by ships and autonomous underwater vehicles. In summary, the system is capable of producing a realistic evolution of the near-surface circulation within PWS including forecasts of up to two days of this evolution. Use of the products provided by the system during the experiment as part of the asset deployment decision making process demonstrated the value of accurate regional ocean forecasts in support of field experiments.

Space Station Freedom altitude strategy

NASA Technical Reports Server (NTRS)

Mcdonald, Brian M.; Teplitz, Scott B.

1990-01-01

The Space Station Freedom (SSF) altitude strategy provides guidelines and assumptions to determine an altitude profile for Freedom. The process for determining an altitude profile incorporates several factors such as where the Space Shuttle will rendezvous with the SSF, when reboosts must occur, and what atmospheric conditions exist causing decay. The altitude strategy has an influence on all areas of SSF development and mission planning. The altitude strategy directly affects the micro-gravity environment for experiments, propulsion and control system sizing, and Space Shuttle delivery manifests. Indirectly the altitude strategy influences almost every system and operation within the Space Station Program. Evolution of the SSF altitude strategy has been a very dynamic process over the past few years. Each altitude strategy in turn has emphasized a different consideration. Examples include a constant Space Shuttle rendezvous altitude for mission planning simplicity, or constant micro-gravity levels with its inherent emphasis on payloads, or lifetime altitudes to provide a safety buffer to loss of control conditions. Currently a new altitude strategy is in development. This altitude strategy will emphasize Space Shuttle delivery optimization. Since propellant is counted against Space Shuttle payload-to-orbit capacity, lowering the rendezvous altitude will not always increase the net payload-to-orbit, since more propellant would be required for reboost. This altitude strategy will also consider altitude biases to account for Space Shuttle launch slips and an unexpected worsening of atmospheric conditions. Safety concerns will define a lower operational altitude limit, while radiation levels will define upper altitude constraints. The evolution of past and current SSF altitude strategies and the development of a new altitude strategy which focuses on operational issues as opposed to design are discussed.

Combined magnetic and kinetic control of advanced tokamak steady state scenarios based on semi-empirical modelling

DOE PAGES

Moreau, Didier; Artaud, J. F.; Ferron, John R.; ...

2015-05-01

This paper shows that semi-empirical data-driven models based on a twotime- scale approximation for the magnetic and kinetic control of advanced tokamak (AT) scenarios can be advantageously identified from simulated rather than real data, and used for control design. The method is applied to the combined control of the safety factor profile, q(x), and normalized pressure parameter, β N, using DIII-D parameters and actuators (on-axis co-current neutral beam injection (NBI) power, off axis co-current NBI power, electron cyclotron current drive power, and ohmic coil). The approximate plasma response model was identified from simulated data obtained using a rapidly converging plasmamore » transport code, METIS, which includes an MHD equilibrium and current diffusion solver, and combines plasma transport nonlinearity with 0-D scaling laws and 1.5-D ordinary differential equations. A number of open loop simulations were performed, in which the heating and current drive (H&CD) sources were randomly modulated around the typical values of a reference AT discharge on DIIID. Using these simulated data, a two-time-scale state space model was obtained for the coupled evolution of the poloidal flux profile and βN parameter, and a controller was synthesized based on the near-optimal ARTAEMIS algorithm [D. Moreau et al., Nucl. Fusion 53 (2013) 063020]. The paper discusses the results of closed-loop nonlinear simulations, using this controller for steady state AT operation. With feedforward plus feedback control, the steady state target q-profile and β N are satisfactorily tracked with a time scale of about ten seconds, despite large disturbances applied to the feedforward powers and plasma parameters. The effectiveness of the control algorithm is thus demonstrated for long pulse and steady state high-β N AT discharges. Its robustness with respect to disturbances of the H&CD actuators and of plasma parameters such as the H-factor, plasma density and effective charge, is also shown.« less

Lidar Profiling In the lower Troposphere: experience from PECAN

NASA Astrophysics Data System (ADS)

Demoz, Belay B.; Delgado, Ruben; Caroll, Brian; Vermeesch, Kevin; Whiteman, David N.; Sakai, Ricardo; Tesfay, Sium; Cooper, Lorenza

2018-04-01

Results from the PECAN (Plains Elevated Convection at Night) campaign are discussed. In particular, the utility of simple backscatter lidars/ceilometers in quantifying atmospheric dynamics parameters and variables as well as evolution of the lower tropospheric dynamics are made. Cases of bore wave dynamics and the potential of these events in lofting of low level, moist, airmass and its consequence in thunderstorm initiation are made. A suite of thermodynamic profiling instruments are combined and compared to describe and visualize lower tropospheric dynamic evolution.

Modelling and measurements of bunch profiles at the LHC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Papadopoulou, S.; Antoniou, F.; Argyropoulos, T.

The bunch profiles in the LHC are often observed to be non-Gaussian, both at Flat Bottom (FB) and Flat Top (FT) energies. Especially at FT, an evolution of the tail population in time is observed. In this respect, the Monte-Carlo Software for IBS and Radiation effects (SIRE) is used to track different types of beam distributions. The impact of the distribution shape on the evolution of bunch characteristics is studied. The results are compared with observations from the LHC Run 2 data.

Simulation of the hybrid and steady state advanced operating modes in ITER

NASA Astrophysics Data System (ADS)

Kessel, C. E.; Giruzzi, G.; Sips, A. C. C.; Budny, R. V.; Artaud, J. F.; Basiuk, V.; Imbeaux, F.; Joffrin, E.; Schneider, M.; Murakami, M.; Luce, T.; St. John, Holger; Oikawa, T.; Hayashi, N.; Takizuka, T.; Ozeki, T.; Na, Y.-S.; Park, J. M.; Garcia, J.; Tucillo, A. A.

2007-09-01

Integrated simulations are performed to establish a physics basis, in conjunction with present tokamak experiments, for the operating modes in the International Thermonuclear Experimental Reactor (ITER). Simulations of the hybrid mode are done using both fixed and free-boundary 1.5D transport evolution codes including CRONOS, ONETWO, TSC/TRANSP, TOPICS and ASTRA. The hybrid operating mode is simulated using the GLF23 and CDBM05 energy transport models. The injected powers are limited to the negative ion neutral beam, ion cyclotron and electron cyclotron heating systems. Several plasma parameters and source parameters are specified for the hybrid cases to provide a comparison of 1.5D core transport modelling assumptions, source physics modelling assumptions, as well as numerous peripheral physics modelling. Initial results indicate that very strict guidelines will need to be imposed on the application of GLF23, for example, to make useful comparisons. Some of the variations among the simulations are due to source models which vary widely among the codes used. In addition, there are a number of peripheral physics models that should be examined, some of which include fusion power production, bootstrap current, treatment of fast particles and treatment of impurities. The hybrid simulations project to fusion gains of 5.6-8.3, βN values of 2.1-2.6 and fusion powers ranging from 350 to 500 MW, under the assumptions outlined in section 3. Simulations of the steady state operating mode are done with the same 1.5D transport evolution codes cited above, except the ASTRA code. In these cases the energy transport model is more difficult to prescribe, so that energy confinement models will range from theory based to empirically based. The injected powers include the same sources as used for the hybrid with the possible addition of lower hybrid. The simulations of the steady state mode project to fusion gains of 3.5-7, βN values of 2.3-3.0 and fusion powers of 290 to 415 MW, under the assumptions described in section 4. These simulations will be presented and compared with particular focus on the resulting temperature profiles, source profiles and peripheral physics profiles. The steady state simulations are at an early stage and are focused on developing a range of safety factor profiles with 100% non-inductive current.

Control of ITBs in Fusion Self-Heated Plasmas

NASA Astrophysics Data System (ADS)

Panta, Soma; Newman, David; Terry, Paul; Sanchez, Raul

2015-11-01

Simple dynamical models have been able to capture a remarkable amount of the dynamics of the transport barriers found in many devices, including the often disconnected nature of the electron thermal transport channel sometimes observed in the presence of a standard (``ion channel'') barrier. By including in this rich though simple dynamic transport model an evolution equation for electron fluctuations we have previously investigated the interaction between the formation of the standard ion channel barrier and the somewhat less common electron channel barrier. The electron channel formation and evolution is even more sensitive to the alignment of the various gradients making up the sheared radial electric field then the ion barrier is. Because of this sensitivity and coupling of the barrier dynamics, the dynamic evolution of the fusion self-heating profile can have a significant impact on the barrier location and dynamics. To investigate this, self-heating has been added this model and the impact of the self-heating on the formation and controllability of the various barriers is explored. It has been found that the evolution of the heating profiles can suppress or collapse the electron channel barrier. NBI and RF schemes will be investigated for profile/barrier control.

Multi-omics Analysis Sheds Light on the Evolution and the Intracellular Lifestyle Strategies of Spotted Fever Group Rickettsia spp.

PubMed Central

El Karkouri, Khalid; Kowalczewska, Malgorzata; Armstrong, Nicholas; Azza, Said; Fournier, Pierre-Edouard; Raoult, Didier

2017-01-01

Arthropod-borne Rickettsia species are obligate intracellular bacteria which are pathogenic for humans. Within this genus, Rickettsia slovaca and Rickettsia conorii cause frequent and potentially severe infections, whereas Rickettsia raoultii and Rickettsia massiliae cause rare and milder infections. All four species belong to spotted fever group (SFG) rickettsiae. However, R. slovaca and R. raoultii cause scalp eschar and neck lymphadenopathy (SENLAT) and are mainly associated with Dermacentor ticks, whereas the other two species cause Mediterranean spotted fever (MSF) and are mainly transmitted by Rhipicephalus ticks. To identify the potential genes and protein profiles and to understand the evolutionary processes that could, comprehensively, relate to the differences in virulence and pathogenicity observed between these four species, we compared their genomes and proteomes. The virulent and milder agents displayed divergent phylogenomic evolution in two major clades, whereas either SENLAT or MSF disease suggests a discrete convergent evolution of one virulent and one milder agent, despite their distant genetic relatedness. Moreover, the two virulent species underwent strong reductive genomic evolution and protein structural variations, as well as a probable loss of plasmid(s), compared to the two milder species. However, an abundance of mobilome genes was observed only in the less pathogenic species. After infecting Xenopus laevis cells, the virulent agents displayed less up-regulated than down-regulated proteins, as well as less number of identified core proteins. Furthermore, their similar and distinct protein profiles did not contain some genes (e.g., ompA/B and rickA) known to be related to rickettsial adhesion, motility and/or virulence, but may include other putative virulence-, antivirulence-, and/or disease-related proteins. The identified evolutionary forces herein may have a strong impact on intracellular expressions and strategies in these rickettsiae, and that may contribute to the emergence of distinct virulence and diseases in humans. Thus, the current multi-omics data provide new insights into the evolution and fitness of SFG virulence and pathogenicity, and intracellular pathogenic bacteria. PMID:28775717

Hydrostatic Chandra X-ray analysis of SPT-selected galaxy clusters - I. Evolution of profiles and core properties

NASA Astrophysics Data System (ADS)

Sanders, J. S.; Fabian, A. C.; Russell, H. R.; Walker, S. A.

2018-02-01

We analyse Chandra X-ray Observatory observations of a set of galaxy clusters selected by the South Pole Telescope using a new publicly available forward-modelling projection code, MBPROJ2, assuming hydrostatic equilibrium. By fitting a power law plus constant entropy model we find no evidence for a central entropy floor in the lowest entropy systems. A model of the underlying central entropy distribution shows a narrow peak close to zero entropy which accounts for 60 per cent of the systems, and a second broader peak around 130 keV cm2. We look for evolution over the 0.28-1.2 redshift range of the sample in density, pressure, entropy and cooling time at 0.015R500 and at 10 kpc radius. By modelling the evolution of the central quantities with a simple model, we find no evidence for a non-zero slope with redshift. In addition, a non-parametric sliding median shows no significant change. The fraction of cool-core clusters with central cooling times below 2 Gyr is consistent above and below z = 0.6 (˜30-40 per cent). Both by comparing the median thermodynamic profiles, centrally biased towards cool cores, in two redshift bins, and by modelling the evolution of the unbiased average profile as a function of redshift, we find no significant evolution beyond self-similar scaling in any of our examined quantities. Our average modelled radial density, entropy and cooling-time profiles appear as power laws with breaks around 0.2R500. The dispersion in these quantities rises inwards of this radius to around 0.4 dex, although some of this scatter can be fitted by a bimodal model.

Small-scale lacustrine drifts in Lake Champlain, Vermont

USGS Publications Warehouse

Manley, Patricia L.; Manley, T.O.; Hayo, Kathryn; Cronin, Thomas

2012-01-01

High resolution CHIRP (Compressed High Intensity Radar Pulse) seismic profiles reveal the presence of two lacustrine sediment drifts located in Lake Champlain's Juniper Deep. Both drifts are positive features composed of highly laminated sediments. Drift B sits on a basement high while Drift A is built on a trough-filling acoustically-transparent sediment unit inferred to be a mass-transport event. These drifts are oriented approximately north–south and are parallel to a steep ridge along the eastern shore of the basin. Drift A, located at the bottom of a structural trough, is classified as a confined, elongate drift that transitions northward to become a system of upslope asymmetric mudwaves. Drift B is perched atop a structural high to the west of Drift A and is classified as a detached elongate drift. Bottom current depositional control was investigated using Acoustic Doppler Current Profilers (ADCPs) located across Drift A. Sediment cores were taken at the crest and at the edges of the Drift A and were dated. Drift source, deposition, and evolution show that these drifts are formed by a water column shear with the highest deposition occurring along its crest and western flank and began developing circa 8700–8800 year BP.

Single-Cell Sequencing for Precise Cancer Research: Progress and Prospects.

PubMed

Zhang, Xiaoyan; Marjani, Sadie L; Hu, Zhaoyang; Weissman, Sherman M; Pan, Xinghua; Wu, Shixiu

2016-03-15

Advances in genomic technology have enabled the faithful detection and measurement of mutations and the gene expression profile of cancer cells at the single-cell level. Recently, several single-cell sequencing methods have been developed that permit the comprehensive and precise analysis of the cancer-cell genome, transcriptome, and epigenome. The use of these methods to analyze cancer cells has led to a series of unanticipated discoveries, such as the high heterogeneity and stochastic changes in cancer-cell populations, the new driver mutations and the complicated clonal evolution mechanisms, and the novel identification of biomarkers of variant tumors. These methods and the knowledge gained from their utilization could potentially improve the early detection and monitoring of rare cancer cells, such as circulating tumor cells and disseminated tumor cells, and promote the development of personalized and highly precise cancer therapy. Here, we discuss the current methods for single cancer-cell sequencing, with a strong focus on those practically used or potentially valuable in cancer research, including single-cell isolation, whole genome and transcriptome amplification, epigenome profiling, multi-dimensional sequencing, and next-generation sequencing and analysis. We also examine the current applications, challenges, and prospects of single cancer-cell sequencing. ©2016 American Association for Cancer Research.

The relationship of high school students' attitudes towards creation and evolution with the students' worldview philosophy

NASA Astrophysics Data System (ADS)

Ray, Donald David, Jr.

This prospectus examines the relationship of high school students' attitudes toward creation and evolution with the student's worldview philosophy. Chapter 1 presents the purpose of the research, which is to discover if there is a positive correlation in the relationship of high school students' attitudes toward creation and evolution and other aspects of worldview such as politics, economics, education, religion, and social issues. Also, the study will examine the frequency and comparative magnitude of the worldviews of homeschool, public school and Christian school students. Chapter 2 surveys precedents in the literature that are appropriate to the study. The significant literature to the study begins with the analysis of the relevant theological presuppositions pertaining to the topics of creation, evolution, and worldview. The analysis then moves to the literature on the relevant educational assumptions, which include theories, philosophies and practices related to high school students' attitudes toward creation and evolution with worldviews. Chapter 3 describes the methodological design for the study. Included in the chapter are the selection and profile of the sample, the selection and development of the instruments, namely the Creationist Worldview Test developed by Steve Deckard, and the PEERS Test---a worldview opinion survey developed by the Nehemiah Institute. Finally, the step-by-step protocol used in gathering the data completes the section. Chapter 4 presents the analysis of the data developed from the responses to the Creationist Worldview Test and the PEERS Test provided by the Nehemiah Institute and by the researcher. Profiles of each of the subgroups will be provided along with comparative analysis of the profiles. Concluding the chapter are summaries of profiles and comparative analysis. Chapter 5 presents a summary of the data describes the relationship of high school students' attitudes toward creation and evolution with the student's worldview philosophy. In addition, the major findings and general conclusions from the data are provided. The chapter concludes with recommendations for further research in this correlational analysis of origins.

Sex that moves mountains: The influence of spawning fish on river profiles over geologic timescales

NASA Astrophysics Data System (ADS)

Fremier, Alexander K.; Yanites, Brian J.; Yager, Elowyn M.

2018-03-01

A key component of resilience is to understand feedbacks among components of biophysical systems, such as physical drivers, ecological responses and the subsequent feedbacks onto physical process. While physically based explanations of biological speciation are common (e.g., mountains separating a species can lead to speciation), less common is the inverse process examined: can a speciation event have significant influence on physical processes and patterns in a landscape? When such processes are considered, such as with 'ecosystem engineers', many studies have focused on the short-term physical and biological effects rather than the long-term impacts. Here, we formalized the physical influence of salmon spawning on stream beds into a model of channel profile evolution by altering the critical shear stress required to move stream bed particles. We then asked if spawning and an adaptive radiation event (similar to the one that occurred in Pacific salmon species) could have an effect on channel erosion processes and stream profiles over geological timescales. We found that spawning can profoundly influence the longitudinal profiles of stream beds and thereby the evolution of entire watersheds. The radiation of five Pacific salmon from a common ancestor, additionally, could also cause significant geomorphic change by altering a wider section of the profile for a given distribution of grain sizes. This modeling study suggests that biological evolution can impact landscape evolution by increasing the sediment transport and erosion efficiency of mountain streams. Moreover, the physical effects of a species on its environment might be a complementary explanation for rapid radiation events in species through the creation of new habitat types. This example provides an illustrative case for thinking about the long- and short-term coupling of biotic and abiotic systems.

Laboratory Study on the Effect of Tidal Stream Turbines on Hydrodynamics and Sediment Dynamics

NASA Astrophysics Data System (ADS)

Amoudry, L.; Ramirez-Mendoza, R.; Peter, T.; McLelland, S.; Simmons, S.; Parsons, D. R.; Vybulkova, L.

2016-02-01

Tidal stream turbines (TST) are one potential technology for harnessing tidal energy, and the measurement and characterisation of their wakes is important both for environmental and development reasons. Indeed, wake recovery length is an important parameter for appropriate design of arrays, and wakes may result in altered dynamics both in the water column and at the seabed. We will report on laboratory scale experiments over a mobile sediment bed, which aim to quantify the detailed wake structure and its impact on sediment transport dynamics. A 0.2 m diameter model turbine was installed in a large-scale flume (16 m long, 1.6 m wide, 0.6 m deep) at the University of Hull's Total Environment Simulator and a steady current was driven over an artificial sediment bed using recirculating pumps. A high-resolution pulse-coherent acoustic Doppler profiler (Nortek Aquadopp HR) was used to measure vertical profiles of the three-dimensional mean current at different locations downstream of the model turbine. A three-dimensional Acoustic Ripple Profiler was used to map the bed and its evolution during the experiments. Acoustic backscatter systems were also deployed in two-dimensional arrays both along the flume and across the flume. These measurements revealed that the presence of the model turbine resulted in an expected reduction of the mean current and in changes in the vertical shear profiles. The bed mapping highlighted a horseshoe-shaped scour near the model turbine, and sediment deposition in the far wake region. The model turbine significantly influenced the suspension patterns, and generated significant asymmetry in the process, which was also evident from the other measurements (flow and sediment bed). These results highlight the effects induced by TSTs on near-bed hydrodynamics, suspension dynamics, and geomorphology, which may all have to be considered prior to large-scale deployments of arrays of TSTs in shelf seas.

Demonstration of Current Profile Shaping using Double Dog-Leg Emittance Exchange Beam Line at Argonne Wakefield Accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ha, Gwanghui; Cho, Moo-Hyun; Conde, Manoel

Emittance exchange (EEX) based longitudinal current profile shaping is the one of the promising current profile shaping technique. This method can generate high quality arbitrary current profiles under the ideal conditions. The double dog-leg EEX beam line was recently installed at the Argonne Wakefield Accelerator (AWA) to explore the shaping capability and confirm the quality of this method. To demonstrate the arbitrary current profile generation, several different transverse masks are applied to generate different final current profiles. The phase space slopes and the charge of incoming beam are varied to observe and suppress the aberrations on the ideal profile. Wemore » present current profile shaping results, aberrations on the shaped profile, and its suppression.« less

Direct imaging of Cl- and Cu-induced short-circuit efficiency changes in CdTe solar cells

DOE PAGES

Poplawsky, Jonathan D.; Parish, Chad M.; Leonard, Donovan N.; ...

2014-05-30

To achieve high-efficiency polycrystalline CdTe-based thin-film solar cells, the CdTe absorbers must go through a post-deposition CdCl 2 heat treatment followed by a Cu diffusion step. To better understand the roles of each treatment with regard to improving grains, grain boundaries, and interfaces, CdTe solar cells with and without Cu diffusion and CdCl 2 heat treatments are investigated using cross-sectional electron beam induced current, electron backscatter diffraction, and scanning transmission electron microscope techniques. The evolution of the cross-sectional carrier collection profile due to these treatments that cause an increase in short-circuit current and higher open-circuit voltage are identified. Additionally, anmore » increased carrier collection in grain boundaries after either/both of these treatments is revealed. The increased current at the grain boundaries is shown to be due to the presence of a space charge region with an intrinsic carrier collection profile width of ≈350 nm. Scanning transmission electron microscope electron-energy loss spectroscopy shows a decreased Te and increased Cl concentration in grain boundaries after treatment, which causes the inversion. Furthermore, each treatment improves the overall carrier collection efficiency of the cell separately, and, therefore, the benefits realized by each treatment are shown to be independent of each other.« less

Intrinsic Flow and Momentum Transport during Improved Confinement in MST

NASA Astrophysics Data System (ADS)

Craig, D.; Tan, E.; Schott, B.; Anderson, J. K.; Boguski, J.; Nornberg, M. D.; Xing, Z. A.

2017-10-01

Progress in absolute wavelength calibration of the Charge Exchange Recombination Spectroscopy (CHERS) system on MST has enabled new observations and analysis of intrinsic flow and momentum transport. Localized toroidal and poloidal flow measurements with systematic accuracy of +/- 3 km/s have been obtained during improved confinement Pulsed Parallel Current Drive (PPCD) plasmas at high plasma current (400-500 kA). The magnetic activity prior to and during the transition to improved confinement tends to increase the flow and sets the initial condition for the momentum profile evolution during improved confinement where intrinsic flow drive appears to weaken. Inboard flows change in time during PPCD, consistent with changes in the core-resonant m =1, n =6 tearing mode phase velocity. Outboard flows near the magnetic axis are time-independent, resulting in the development of a strongly sheared toroidal flow in the core and asymmetry in the poloidal flow profile. The deceleration of the n =6 mode during the period of improved confinement correlates well with the n =6 mode amplitude and is roughly consistent with the expected torque from eddy currents in the conducting shell. The level of Dα emission and secondary mode amplitudes (n =7-10) do not correlate with the mode deceleration suggesting that the momentum loss from charge exchange with neutrals and diffusion due to residual magnetic stochasticity are not significant in PPCD. This work has been supported by the U.S.D.O.E.

Effects of the resistivity profile on the formation of a reversed configuration and single helicity states in compressible simulations of the reversed-field pinch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Onofri, M.; Malara, F.

2013-10-15

Compressible magnetohydrodynamics simulations of the reversed-field pinch (RFP) are presented. Previous simulations of the RFP, including density and pressure evolution, showed that a stationary state with a reversed toroidal magnetic field could not be obtained, contrary to the results produced with numerical codes neglecting density and pressure dynamics. The simulations described in the present paper show that including density and pressure evolution, a stationary RFP configuration can be obtained if the resistivity has a radial profile steeply increasing close to the wall. Such resistivity profile is more realistic than a uniform resistivity, since the temperature at the wall is lowermore » than in the plasma core.« less

Dynamical evolution of dense star clusters in galactic nuclei

NASA Astrophysics Data System (ADS)

Haas, Jaroslav; Šubr, Ladislav

2014-05-01

By means of direct numerical N-body modeling, we investigate the orbital evolution of an initially thin, central mass dominated stellar disk. We include the perturbative gravitational influence of an extended spherically symmetric star cluster and the mutual gravitational interaction of the stars within the disk. Our results show that the two-body relaxation of the disk leads to significant changes of its radial density profile. In particular, the disk naturally evolves, for a variety of initial configurations, a similar broken power-law surface density profile. Hence, it appears that the single power-law surface density profile ∝R -2 suggested by various authors to describe the young stellar disk observed in the Sgr A* region does not match theoretical expectations.

Predicting turns in proteins with a unified model.

PubMed

Song, Qi; Li, Tonghua; Cong, Peisheng; Sun, Jiangming; Li, Dapeng; Tang, Shengnan

2012-01-01

Turns are a critical element of the structure of a protein; turns play a crucial role in loops, folds, and interactions. Current prediction methods are well developed for the prediction of individual turn types, including α-turn, β-turn, and γ-turn, etc. However, for further protein structure and function prediction it is necessary to develop a uniform model that can accurately predict all types of turns simultaneously. In this study, we present a novel approach, TurnP, which offers the ability to investigate all the turns in a protein based on a unified model. The main characteristics of TurnP are: (i) using newly exploited features of structural evolution information (secondary structure and shape string of protein) based on structure homologies, (ii) considering all types of turns in a unified model, and (iii) practical capability of accurate prediction of all turns simultaneously for a query. TurnP utilizes predicted secondary structures and predicted shape strings, both of which have greater accuracy, based on innovative technologies which were both developed by our group. Then, sequence and structural evolution features, which are profile of sequence, profile of secondary structures and profile of shape strings are generated by sequence and structure alignment. When TurnP was validated on a non-redundant dataset (4,107 entries) by five-fold cross-validation, we achieved an accuracy of 88.8% and a sensitivity of 71.8%, which exceeded the most state-of-the-art predictors of certain type of turn. Newly determined sequences, the EVA and CASP9 datasets were used as independent tests and the results we achieved were outstanding for turn predictions and confirmed the good performance of TurnP for practical applications.

Predicting Turns in Proteins with a Unified Model

PubMed Central

Song, Qi; Li, Tonghua; Cong, Peisheng; Sun, Jiangming; Li, Dapeng; Tang, Shengnan

2012-01-01

Motivation Turns are a critical element of the structure of a protein; turns play a crucial role in loops, folds, and interactions. Current prediction methods are well developed for the prediction of individual turn types, including α-turn, β-turn, and γ-turn, etc. However, for further protein structure and function prediction it is necessary to develop a uniform model that can accurately predict all types of turns simultaneously. Results In this study, we present a novel approach, TurnP, which offers the ability to investigate all the turns in a protein based on a unified model. The main characteristics of TurnP are: (i) using newly exploited features of structural evolution information (secondary structure and shape string of protein) based on structure homologies, (ii) considering all types of turns in a unified model, and (iii) practical capability of accurate prediction of all turns simultaneously for a query. TurnP utilizes predicted secondary structures and predicted shape strings, both of which have greater accuracy, based on innovative technologies which were both developed by our group. Then, sequence and structural evolution features, which are profile of sequence, profile of secondary structures and profile of shape strings are generated by sequence and structure alignment. When TurnP was validated on a non-redundant dataset (4,107 entries) by five-fold cross-validation, we achieved an accuracy of 88.8% and a sensitivity of 71.8%, which exceeded the most state-of-the-art predictors of certain type of turn. Newly determined sequences, the EVA and CASP9 datasets were used as independent tests and the results we achieved were outstanding for turn predictions and confirmed the good performance of TurnP for practical applications. PMID:23144872

Atmospheric Profiles, Clouds, and the Evolution of Sea Ice Cover in the Beaufort and Chukchi Seas Atmospheric Observations and Modeling as Part of the Seasonal Ice Zone Reconnaissance Surveys

DTIC Science & Technology

2013-09-30

Cover in the Beaufort and Chukchi Seas Atmospheric Observations and Modeling as Part of the Seasonal Ice Zone Reconnaissance Surveys Axel...how changes in sea ice and sea surface conditions in the SIZ affect changes in cloud properties and cover . • Determine the role additional atmospheric...REPORT TYPE 3. DATES COVERED 00-00-2013 to 00-00-2013 4. TITLE AND SUBTITLE Atmospheric Profiles, Clouds, and the Evolution of Sea Ice Cover in the

Intra-Tumor Genetic Heterogeneity in Wilms Tumor: Clonal Evolution and Clinical Implications.

PubMed

Cresswell, George D; Apps, John R; Chagtai, Tasnim; Mifsud, Borbala; Bentley, Christopher C; Maschietto, Mariana; Popov, Sergey D; Weeks, Mark E; Olsen, Øystein E; Sebire, Neil J; Pritchard-Jones, Kathy; Luscombe, Nicholas M; Williams, Richard D; Mifsud, William

2016-07-01

The evolution of pediatric solid tumors is poorly understood. There is conflicting evidence of intra-tumor genetic homogeneity vs. heterogeneity (ITGH) in a small number of studies in pediatric solid tumors. A number of copy number aberrations (CNA) are proposed as prognostic biomarkers to stratify patients, for example 1q+ in Wilms tumor (WT); current clinical trials use only one sample per tumor to profile this genetic biomarker. We multisampled 20 WT cases and assessed genome-wide allele-specific CNA and loss of heterozygosity, and inferred tumor evolution, using Illumina CytoSNP12v2.1 arrays, a custom analysis pipeline, and the MEDICC algorithm. We found remarkable diversity of ITGH and evolutionary trajectories in WT. 1q+ is heterogeneous in the majority of tumors with this change, with variable evolutionary timing. We estimate that at least three samples per tumor are needed to detect >95% of cases with 1q+. In contrast, somatic 11p15 LOH is uniformly an early event in WT development. We find evidence of two separate tumor origins in unilateral disease with divergent histology, and in bilateral WT. We also show subclonal changes related to differential response to chemotherapy. Rational trial design to include biomarkers in risk stratification requires tumor multisampling and reliable delineation of ITGH and tumor evolution. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Effect of pulsed discharge on the ignition of pulse modulated radio frequency glow discharge at atmospheric pressure

NASA Astrophysics Data System (ADS)

Qiu, Shenjie; Guo, Ying; Han, Qianhan; Bao, Yun; Zhang, Jing; Shi, J. J.

2018-01-01

A pulsed discharge is introduced between two sequential pulse-modulated radio frequency glow discharges in atmospheric helium. The dependence of radio frequency discharge ignition on pulsed discharge intensity is investigated experimentally with the pulse voltage amplitudes of 650, 850, and 1250 V. The discharge characteristics and dynamics are studied in terms of voltage and current waveforms, and spatial-temporal evolution of optical emission. With the elevated pulsed discharge intensity of two orders of magnitude, the ignition of radio frequency discharge is enhanced by reducing the ignition time and achieving the stable operation with a double-hump spatial profile. The ignition time of radio frequency discharge is estimated to be 2.0 μs, 1.5 μs, and 1.0 μs with the pulse voltage amplitudes of 650, 850, and 1250 V, respectively, which is also demonstrated by the spatial-temporal evolution of optical emission at 706 and 777 nm.

Diffusion of external magnetic fields into the cone-in-shell target in the fast ignition

NASA Astrophysics Data System (ADS)

Sunahara, Atsushi; Morita, Hiroki; Johzaki, Tomoyuki; Nagatomo, Hideo; Fujioka, Shinsuke; Hassanein, Ahmed; Firex Project Team

2017-10-01

We simulated the diffusion of externally applied magnetic fields into cone-in-shell target in the fast ignition. Recently, in the fast ignition scheme, the externally magnetic fields up to kilo-Tesla is used to guide fast electrons to the high-dense imploded core. In order to study the profile of the magnetic field, we have developed 2D cylindrical Maxwell equation solver with Ohm's law, and carried out simulations of diffusion of externally applied magnetic fields into a cone-in-shell target. We estimated the conductivity of the cone and shell target based on the assumption of Saha-ionization equilibrium. Also, we calculated the temporal evolution of the target temperature heated by the eddy current driven by temporal variation of magnetic fields, based on the accurate equation of state. Both, the diffusion of magnetic field and the increase of target temperature interact with each other. We present our results of temporal evolution of the magnetic field and its diffusion into the cone and shell target.

Gas-filled capillaries for plasma-based accelerators

NASA Astrophysics Data System (ADS)

Filippi, F.; Anania, M. P.; Brentegani, E.; Biagioni, A.; Cianchi, A.; Chiadroni, E.; Ferrario, M.; Pompili, R.; Romeo, S.; Zigler, A.

2017-07-01

Plasma Wakefield Accelerators are based on the excitation of large amplitude plasma waves excited by either a laser or a particle driver beam. The amplitude of the waves, as well as their spatial dimensions and the consequent accelerating gradient depend strongly on the background electron density along the path of the accelerated particles. The process needs stable and reliable plasma sources, whose density profile must be controlled and properly engineered to ensure the appropriate accelerating mechanism. Plasma confinement inside gas filled capillaries have been studied in the past since this technique allows to control the evolution of the plasma, ensuring a stable and repeatable plasma density distribution during the interaction with the drivers. Moreover, in a gas filled capillary plasma can be pre-ionized by a current discharge to avoid ionization losses. Different capillary geometries have been studied to allow the proper temporal and spatial evolution of the plasma along the acceleration length. Results of this analysis obtained by varying the length and the number of gas inlets will be presented.

Effect of the stellar spin history on the tidal evolution of close-in planets

NASA Astrophysics Data System (ADS)

Bolmont, E.; Raymond, S. N.; Leconte, J.; Matt, S. P.

2012-08-01

Context. The spin rate of stars evolves substantially during their lifetime, owing to the evolution of their internal structure and to external torques arising from the interaction of stars with their environments and stellar winds. Aims: We investigate how the evolution of the stellar spin rate affects, and is affected by, planets in close orbits via star-planet tidal interactions. Methods: We used a standard equilibrium tidal model to compute the orbital evolution of single planets orbiting both Sun-like stars and very low-mass stars (0.1 M⊙). We tested two stellar spin evolution profiles, one with fast initial rotation (1.2 day rotation period) and one with slow initial rotation (8 day period). We tested the effect of varying the stellar and planetary dissipations, and the planet's mass and initial orbital radius. Results: For Sun-like stars, the different tidal evolution between initially rapidly and slowly rotating stars is only evident for extremely close-in gas giants orbiting highly dissipative stars. However, for very low-mass stars the effect of the initial rotation of the star on the planet's evolution is apparent for less massive (1 M⊕) planets and typical dissipation values. We also find that planetary evolution can have significant effects on the stellar spin history. In particular, when a planet falls onto the star, it can cause the star to spin up. Conclusions: Tidal evolution allows us to differentiate between the early behaviors of extremely close-in planets orbiting either a rapidly rotating star or a slowly rotating star. The early spin-up of the star allows the close-in planets around fast rotators to survive the early evolution. For planets around M-dwarfs, surviving the early evolution means surviving on Gyr timescales, whereas for Sun-like stars the spin-down brings about late mergers of Jupiter planets. In the light of this study, we can say that differentiating one type of spin evolution from another given the present position of planets can be very tricky. Unless we can observe some markers of former evolution, it is nearly impossible to distinguish the two very different spin profiles, let alone intermediate spin-profiles. Nevertheless, some conclusions can still be drawn about statistical distributions of planets around fully convective M-dwarfs. If tidal evolution brings about a merger late in the stellar history, it can also entail a noticeable acceleration of the star at late ages, so that it is possible to have old stars that spin rapidly. This raises the question of how the age of stars can be more tightly constrained.

The down canyon evolution of submarine sediment density flows

NASA Astrophysics Data System (ADS)

Parsons, D. R.; Barry, J.; Clare, M. A.; Cartigny, M.; Chaffey, M. R.; Gales, J. A.; Gwiazda, R.; Maier, K. L.; McGann, M.; Paull, C. K.; O'Reilly, T. C.; Rosenberger, K. J.; Simmons, S.; Sumner, E. J.; Talling, P.; Xu, J.

2017-12-01

Submarine density flows, known as turbidity currents, transfer globally significant volumes of terrestrial and shelf sediments, organic carbon, nutrients and fresher-water into the deep ocean. Understanding such flows has wide implications for global organic carbon cycling, the functioning of deep-sea ecosystems, seabed infrastructure hazard assessments, and interpreting geological archives of Earth history. Only river systems transport comparable volumes of sediment over such large areas of the globe. Despite their clear importance, there are remarkably few direct measurements of these oceanic turbidity currents in action. Here we present results from the multi-institution Coordinated Canyon Experiment (CCE) which deployed multiple moorings along the axis of Monterey Canyon (offshore California). An array of six moorings, with downward looking acoustic Doppler current profilers (ADCP) were positioned along the canyon axis from 290 m to 1850 m water depth. The ADCPs reveal the internal flow structure of submarine density flows at each site. We use a novel inversion method to reconstruct the suspended sediment concentration and flow stratification field during each event. Together the six moorings provide the first ever views of the internal structural evolution of turbidity current events as they evolve down system. Across the total 18-month period of deployment at least 15 submarine sediment density flows were measured with velocities up to 8.1 m/sec, with three of these flows extending 50 kms down the canyon beyond the 1850 m water depth mooring. We use these novel data to highlight the controls on ignition, interval structure and collapse of individual events and discuss the implications for the functioning and deposits produced by these enigmatic flows.

The Cosmonaut Sea Wedge

USGS Publications Warehouse

Solli, K.; Kuvaas, B.; Kristoffersen, Y.; Leitchenkov, G.; Guseva, J.; Gandyukhin, V.

2007-01-01

A set of multi-channel seismic profiles (~15000 km) acquired by Russia, Norway and Australia has been used to investigate the depositional evolution of the Cosmonaut Sea margin of East Antarctica. We recognize a regional sediment wedge below the upper part of the continental rise. The wedge, herein termed the Cosmonaut Sea Wedge, is positioned stratigraphically underneath the inferred glaciomarine section and extends for at least 1200 km along the continental margin and from 80 to about 250 km seaward or to the north. Lateral variations in the growth pattern of the wedge indicate several overlapping depocentres, which at their distal northern end are flanked by elongated mounded drifts and contourite sheets. The internal stratification of the mounded drift deposits suggests that westward flowing bottom currents reworked the marginal deposits. The action of these currents together with sea-level changes is considered to have controlled the growth of the wedge. We interpret the Cosmonaut Sea Wedge as a composite feature comprising several bottom current reworked fan systems.

Magnetospheric Reconnection in Modified Current-Sheet Equilibria

NASA Astrophysics Data System (ADS)

Newman, D. L.; Goldman, M. V.; Lapenta, G.; Markidis, S.

2012-10-01

Particle simulations of magnetic reconnection in Earth's magnetosphere are frequently initialized with a current-carrying Harris equilibrium superposed on a current-free uniform background plasma. The Harris equilibrium satisfies local charge neutrality, but requires that the sheet current be dominated by the hotter species -- often the ions in Earth's magnetosphere. This constraint is not necessarily consistent with observations. A modified kinetic equilibrium that relaxes this constraint on the currents was proposed by Yamada et al. [Phys. Plasmas., 7, 1781 (2000)] with no background population. These modified equilibria were characterized by an asymptotic converging or diverging electrostatic field normal to the current sheet. By reintroducing the background plasma, we have developed new families of equilibria where the asymptotic fields are suppressed by Debye shielding. Because the electrostatic potential profiles of these new equilibria contain wells and/or barriers capable of spatially isolating different populations of electrons and/or ions, these solutions can be further generalized to include classes of asymmetric kinetic equilibria. Examples of both symmetric and asymmetric equilibria will be presented. The dynamical evolution of these equilibria, when perturbed, will be further explored by means of implicit 2D PIC reconnection simulations, including comparisons with simulations employing standard Harris-equilibrium initializations.

Deciphering Late-Pleistocence landscape evolution: linking proxies by combining pedo-stratigraphy and luminescence dating

NASA Astrophysics Data System (ADS)

Kreutzer, Sebastian; Meszner, Sascha; Faust, Dominik; Fuchs, Markus

2014-05-01

Interpreting former landscape evolution asks for understanding the processes that sculpt such landforms by means of deciphering complex systems. For reconstructing terrestrial Quaternary environments based on loess archives this might be considered, at least, as a three step process: (1) Identifying valuable records in appropriate morphological positions in a previously defined research area, (2) analysing the profiles by field work and laboratory methods and finally (3) linking the previously considered pseudo-isolated systems to set up a comprehensive picture. Especially the first and the last step might bring some pitfalls, as it is tempting to specify single records as pseudo-isolated, closed systems. They might be, with regard to their preservation in their specific morphological position, but in fact they are part of a complex, open system. Between 2008 and 2013, Late-Pleistocene loess archives in Saxony have been intensively investigated by field and laboratory methods. Linking pedo- and luminescence dating based chronostratigraphies, a composite profile for the entire Saxonian Loess Region has been established. With this, at least, two-fold approach we tried to avoid misinterpretations that might appear when focussing on one standard profile in an open morphological system. Our contribution focuses on this multi-proxy approach to decipher the Late-Pleistocene landscape evolution in the Saxonian Loess Region. Highlighting the challenges and advantages of combining different methods, we believe that (1) this multi-proxy approach is without alternative, (2) the combination of different profiles may simplify the more complex reality, but it may be a useful generalisation to understand and reveal the stratigraphical significance of the landscape evolution in this region.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Popovich, P.; Carter, T. A.; Friedman, B.

Numerical simulation of plasma turbulence in the Large Plasma Device (LAPD) [W. Gekelman, H. Pfister, Z. Lucky et al., Rev. Sci. Instrum. 62, 2875 (1991)] is presented. The model, implemented in the BOUndary Turbulence code [M. Umansky, X. Xu, B. Dudson et al., Contrib. Plasma Phys. 180, 887 (2009)], includes three-dimensional (3D) collisional fluid equations for plasma density, electron parallel momentum, and current continuity, and also includes the effects of ion-neutral collisions. In nonlinear simulations using measured LAPD density profiles but assuming constant temperature profile for simplicity, self-consistent evolution of instabilities and nonlinearly generated zonal flows results in a saturatedmore » turbulent state. Comparisons of these simulations with measurements in LAPD plasmas reveal good qualitative and reasonable quantitative agreement, in particular in frequency spectrum, spatial correlation, and amplitude probability distribution function of density fluctuations. For comparison with LAPD measurements, the plasma density profile in simulations is maintained either by direct azimuthal averaging on each time step, or by adding particle source/sink function. The inferred source/sink values are consistent with the estimated ionization source and parallel losses in LAPD. These simulations lay the groundwork for more a comprehensive effort to test fluid turbulence simulation against LAPD data.« less

A Python Calculator for Supernova Remnant Evolution

NASA Astrophysics Data System (ADS)

Leahy, D. A.; Williams, J. E.

2017-05-01

A freely available Python code for modeling supernova remnant (SNR) evolution has been created. This software is intended for two purposes: to understand SNR evolution and to use in modeling observations of SNR for obtaining good estimates of SNR properties. It includes all phases for the standard path of evolution for spherically symmetric SNRs. In addition, alternate evolutionary models are available, including evolution in a cloudy ISM, the fractional energy-loss model, and evolution in a hot low-density ISM. The graphical interface takes in various parameters and produces outputs such as shock radius and velocity versus time, as well as SNR surface brightness profile and spectrum. Some interesting properties of SNR evolution are demonstrated using the program.

Discharging dynamics in an electrolytic cell

NASA Astrophysics Data System (ADS)

Feicht, Sarah E.; Frankel, Alexandra E.; Khair, Aditya S.

2016-07-01

We analyze the dynamics of a discharging electrolytic cell comprised of a binary symmetric electrolyte between two planar, parallel blocking electrodes. When a voltage is initially applied, ions in the electrolyte migrate towards the electrodes, forming electrical double layers. After the system reaches steady state and the external current decays to zero, the applied voltage is switched off and the cell discharges, with the ions eventually returning to a uniform spatial concentration. At voltages on the order of the thermal voltage VT=kBT /q ≃25 mV, where kB is Boltzmann's constant, T is temperature, and q is the charge of a proton, experiments on surfactant-doped nonpolar fluids observe that the temporal evolution of the external current during charging and discharging is not symmetric [V. Novotny and M. A. Hopper, J. Electrochem. Soc. 126, 925 (1979), 10.1149/1.2129195; P. Kornilovitch and Y. Jeon, J. Appl. Phys. 109, 064509 (2011), 10.1063/1.3554445]. In fact, at sufficiently large voltages (several VT), the current during discharging is no longer monotonic: it displays a "reverse peak" before decaying in magnitude to zero. We analyze the dynamics of discharging by solving the Poisson-Nernst-Planck equations governing ion transport via asymptotic and numerical techniques in three regimes. First, in the "linear regime" when the applied voltage V is formally much less than VT, the charging and discharging currents are antisymmetric in time; however, the potential and charge density profiles during charging and discharging are asymmetric. The current evolution is on the R C timescale of the cell, λDL /D , where L is the width of the cell, D is the diffusivity of ions, and λD is the Debye length. Second, in the (experimentally relevant) thin-double-layer limit ɛ =λD/L ≪1 , there is a "weakly nonlinear" regime defined by VT≲V ≲VTln(1 /ɛ ) , where the bulk salt concentration is uniform; thus the R C timescale of the evolution of the current magnitude persists. However, nonlinear, voltage-dependent, capacitance of the double layer is responsible for a break in temporal antisymmetry of the charging and discharging currents. Third, the reverse peak in the discharging current develops in a "strongly nonlinear" regime V ≳VTln(1 /ɛ ) , driven by neutral salt adsorption into the double layers and consequent bulk depletion during charging. The strongly nonlinear regime features current evolution over three timescales. The current decays in magnitude on the double layer relaxation timescale, λD2/D ; then grows exponentially in time towards the reverse peak on the diffusion timescale, L2/D , indicating that the reverse peak is the results of fast diffusion of ions from the double layer layer to the bulk. Following the reverse peak, the current decays exponentially to zero on the R C timescale. Notably, the current at the reverse peak and the time of the reverse peak saturate at large voltages V ≫VTln(1 /ɛ ) . We provide semi-analytic expressions for the saturated reverse peak time and current, which can be used to infer charge carrier diffusivity and concentration from experiments.

Electrical stimulation for gastroesophageal reflux disease: current state of the art.

PubMed

Kim, Sharon E; Soffer, Edy

2016-01-01

Patients with gastroesophageal reflux disease (GERD) who are not satisfied with acid suppression therapy can benefit primarily from fundoplication, a surgical intervention. Fundoplication has been the standard surgical procedure for GERD. It is effective but is associated with adverse effects, resulting in a declining number of interventions, creating a need for alternative interventions that are effective, yet have a better adverse effect profile. One such alternative involves the application of electrical stimulation to the lower esophageal sphincter. A number of animal studies showed that such stimulation can increase resting lower esophageal sphincter pressure. An acute human study confirmed this effect, and was followed by two open-label studies, with a follow-up of up to 3 years. Results thus far show that the therapy is associated with a significant improvement in symptoms, a significant reduction in esophageal acid exposure, and a very good safety profile. This review will describe the evolution of electrical stimulation therapy for GERD, as well as the safety and efficacy of this intervention.

Computed versus measured ion velocity distribution functions in a Hall effect thruster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garrigues, L.; CNRS, LAPLACE, F-31062 Toulouse; Mazouffre, S.

2012-06-01

We compare time-averaged and time-varying measured and computed ion velocity distribution functions in a Hall effect thruster for typical operating conditions. The ion properties are measured by means of laser induced fluorescence spectroscopy. Simulations of the plasma properties are performed with a two-dimensional hybrid model. In the electron fluid description of the hybrid model, the anomalous transport responsible for the electron diffusion across the magnetic field barrier is deduced from the experimental profile of the time-averaged electric field. The use of a steady state anomalous mobility profile allows the hybrid model to capture some properties like the time-averaged ion meanmore » velocity. Yet, the model fails at reproducing the time evolution of the ion velocity. This fact reveals a complex underlying physics that necessitates to account for the electron dynamics over a short time-scale. This study also shows the necessity for electron temperature measurements. Moreover, the strength of the self-magnetic field due to the rotating Hall current is found negligible.« less

Measurements of plasma profiles using a fast swept Langmuir probe in the VINETA-II magnetic reconnection experiment

NASA Astrophysics Data System (ADS)

Shesterikov, I.; Von Stechow, A.; Grulke, O.; Stenzel, R.; Klinger, T.

2017-07-01

A fast-swept Langmuir probe capable to be biased at a high voltages has been constructed and successfully operated at the VINETA-II magnetic reconnection experiment. The presented circuit has two main features beneficial for fast transient parameter changes in laboratory experiments as, e.g., plasma guns or magnetic reconnection: the implementation simplicity and the high voltage sweep range. This work presents its design and performance for time-dependent measurements of VINETA-II plasmas. The probe is biased with a sinusoidal voltage at a fixed frequency. Current - voltage characteristics are measured along the falling and rising slopes of the probe bias. The sweep frequency is fsweep= 150 kHz. The spatiotemporal evolution of radial plasma profiles is obtained by evaluation of the probe characteristics. The plasma density measurements agree with those derived from a microwave interferometer, demonstrating the reliability of the measurements. As a model plasma system, a plasma gun discharge with typical pulse times of 60 μ s is chosen.

High-resolution phylogenic microbial community profiling

USDA-ARS?s Scientific Manuscript database

PIECE (Plant Intron Exon Comparison and Evolution) is a web-accessible database that houses intron and exon information of plant genes. PIECE serves as a resource for biologists interested in comparing intron–exon organization and provides valuable insights into the evolution of gene structure in pl...

Experimental research on time-resolved evolution of cathode plasma expansion velocity in a long pulsed magnetically insulated coaxial diode

NASA Astrophysics Data System (ADS)

Zhu, Danni; Zhang, Jun; Zhong, Huihuang; Ge, Xingjun; Gao, Jingming

2018-02-01

Unlike planar diodes, separate research of the axial and radial plasma expansion velocities is difficult for magnetically insulated coaxial diodes. Time-resolved electrical diagnostic which is based on the voltage-ampere characteristics has been employed to study the temporal evolution of the axial and radial cathode plasma expansion velocities in a long pulsed magnetically insulated coaxial diode. Different from a planar diode with a "U" shaped profile of temporal velocity evolution, the temporal evolution trend of the axial expansion velocity is proved to be a "V" shaped profile. Apart from the suppression on the radial expansion velocity, the strong magnetic field is also conducive to slowing down the axial expansion velocity. Compared with the ordinary graphite cathode, the carbon velvet and graphite composite cathode showed superior characteristics as judged by the low plasma expansion velocity and long-term electrical stability as a promising result for applications where long-pulsed and reliable operation at high power is required.

Laboratory measurements of white dwarf photospheric spectral lines: Hβ

DOE PAGES

Falcon, Ross Edward; Rochau, Gregory A.; Bailey, James E.; ...

2015-06-18

We spectroscopically measure multiple hydrogen Balmer line profiles from laboratory plasmas to investigate the theoretical line profiles used in white dwarf (WD) atmosphere models. X-ray radiation produced at the Z Pulsed Power Facility at Sandia National Laboratories initiates plasma formation in a hydrogen-filled gas cell, replicating WD photospheric conditions. We also present time-resolved measurements of Hβ and fit this line using different theoretical line profiles to diagnose electron density, n e, and n = 2 level population, n 2. Aided by synthetic tests, we characterize the validity of our diagnostic method for this experimental platform. During a single experiment, wemore » infer a continuous range of electron densities increasing from n e ~ 4 to ~30 × 10 16 cm -3 throughout a 120-ns evolution of our plasma. Also, we observe n 2 to be initially elevated with respect to local thermodynamic equilibrium (LTE); it then equilibrates within ~55 ns to become consistent with LTE. This also supports our electron-temperature determination of T e ~ 1.3 eV (~15,000 K) after this time. At n e≲ 10 17 cm -3, we find that computer-simulation-based line-profile calculations provide better fits (lower reduced χ 2) than the line profiles currently used in the WD astronomy community. The inferred conditions, however, are in good quantitative agreement. Lastly, this work establishes an experimental foundation for the future investigation of relative shapes and strengths between different hydrogen Balmer lines.« less

The immunohistochemistry aspects in two cases of neurofibromatosis-associated abdominal tumors.

PubMed

Carşote, Mara; Păun, S; Neamţu, M C; Avramescu, Elena Taina; Iosif, Cristina; Terzea, Dana; Constantinoiu, S; Dănciulescu Miulescu, Ruxandra; Neamţu, Oana Maria; Poiană, Cătălina

2012-01-01

Type 1 neurofibromatosis associates various abdominal tumors as gastrointestinal stromal tumors, duodenal or pancreatic carcinoid, and adrenal tumors like pheochromocytoma. We present the immunohistochemistry report in two cases with different profile regarding the evolution. One case is a 7th decade women diagnosed with unilateral pheochromocytoma and GISTs, with a good prognosis after surgery. The other case is a 41-year-old male diagnosed with duodenal metastatic somatostatinoma after an intestinal occlusive syndrome and later the hormonal profile leaded to the diagnosis of pheochromocytoma. The patient had a fulminate evolution within six months from diagnosis.

Bottom current deposition in the Antarctic Wilkes Land margin during the Oligocene

NASA Astrophysics Data System (ADS)

Salabarnada, Ariadna; Escutia, Carlota; Nelson, Hans C.; Evangelinos, Dimitris; López-Quirós, Adrián

2017-04-01

Sediment cores collected from the Antarctic Wilkes Land continental rise at IODP site 1356 provide evidence for bottom current sedimentation taking place since the early Oligocene (i.e., 33.6 Ma) (Escutia et al., 2011). Correlation between site 1356 sediments and the regional grid of multichannel seismic reflection profiles, complemented with bathymetric data, allow us to differentiate a variety of contourite deposits resulting from the interaction between bottom currents and seafloor paleomorphologies. Contourite deposits are identified based on the seismic signature, reflector configuration and geometry of the depositional bodies as elongated-mounded drifts, giant mounded drifts, confined drifts, infill drifts, plastered drifts, sediment waves, and moats. Based on the spatial and temporal distribution of these deposits, we differentiate three phases in contourite deposition in this margin: Phase 1) from 33.6-28 Ma sheeted drift morphologies dominate, related to high-energy deposits associated with fast flowing currents during the early Oligocene; Phase 2) At around 28 Ma, mounded drift morphologies and moat channels start forming. Continued intensification of contour currents results in larger contourite morphologies such as giant mounded drifts and moats forming around structural heights present in the Wilkes Land basin (e.g, the Adelie Rift Block). Phase 3) A shift in current configuration is recorded at around 15 Ma above regional unconformity WL-U5, which marks the Oligocene-Miocene Transition. This change is shown by a migration to the North of the drift crests and by a dominance of down-slope sedimentation processes that is indicated by mass transport deposits and channel levee formation. We interpret the evolution of the contourite deposits during the Oligocene in this margin to be driven by changes in the intensity of bottom current activity over time resulting from ice sheet growth, evolution of bottom morphology and related changes in paleoceanographic configuration in the Southern Ocean. This contribution results from work funded by the Spanish Ministry of Economy and Competitivity Grant CTM2014-60451-C2-1-P and FEDER funds.

Release from prey preservation behavior via prey switch allowed diversification of cuticular hydrocarbon profiles in digger wasps.

PubMed

Wurdack, Mareike; Polidori, Carlo; Keller, Alexander; Feldhaar, Heike; Schmitt, Thomas

2017-11-01

The cuticle of insects is covered by a layer of hydrocarbons (CHC), whose original function is the protection from desiccation and pathogens. However, in most insects CHC profiles are species specific. While this variability among species was largely linked to communication and recognition functions, additional selective forces may shape insect CHC profiles. Here, we show that in Philanthinae digger wasps (Crabronidae) the CHC profile coevolved with a peculiar brood-care strategy. In particular, we found that the behavior to embalm prey stored in the nest with hydrocarbons is adaptive to protect larval food from fungi in those species hunting for Hymenoptera. The prey embalming secretion is identical in composition to the alkene-dominated CHC profile in these species, suggesting that their profile is adaptively conserved for this purpose. In contrast, prey embalming is not required in those species that switched to Coleoptera as prey. Released from this chemical brood-care strategy, Coleoptera-hunting species considerably diversified their CHC profiles. Differential needs to successfully protect prey types used as larval food have thus driven the diversification of CHCs profiles of female Philanthinae wasps. To the best of our knowledge, this is the first evidence of a direct link between selection pressure for food preservation and CHC diversity. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Networked Thermodynamic Boundary Layer Profiling with AERIs during the PECAN Field Campaign

NASA Astrophysics Data System (ADS)

Gero, P. J.; Turner, D. D.; Hackel, D.; Phillips, C.; Smith, N.; Wagner, T.

2015-12-01

The Plains Elevated Convection at Night (PECAN) campaign was a large-scale field experiment in the Great Plains region of the U.S. that was conducted in June-July 2015. Nocturnal storms provide the majority of the precipitation in the Great Plains, yet the initiation and evolution of nocturnal convection is not understood to the same level as daytime surface-based convection, and thus provides significant challenges for operational weather forecasters. PECAN's objectives were to study elevated nocturnal convection initiation and the lifecycle of nocturnal convection. Specific research areas that were studied were the evolution of mesoscale convective systems, the structure and evolution of nocturnal low-level jets, atmospheric bores, and elevated convection initiation. A broad range of fixed and mobile observing systems were deployed by several agencies and organizations in a domain centered around Kansas. The Atmospheric Emitted Radiance Interferometer (AERI) is a ground-based instrument that measures downwelling infrared radiance from the atmosphere. AERI observations can be used to obtain vertical profiles of tropospheric temperature and water vapor in the lowest 3 km of the troposphere, as well as measurements of the concentration of various trace gases and microphysical and optical properties of clouds and aerosols. A network of eight AERIs was deployed in the domain during PECAN, with six at fixed sites and two in mobile facilities. One of the goals of the campaign was a demonstration of the use of real-time high-temporal-resolution boundary layer profiles from the network of AERIs for characterizing the mesoscale environment and its evolution during the weather events sampled during PECAN. If successful, a future network could be implemented across CONUS and thermodynamic profiles in the boundary layer data assimilated to help improve numerical weather prediction. We present an overview of the AERI deployments, a summary of the technique used to retrieve thermodynamic profiles from the AERI's observed radiances, and results from the AERI retrievals in different atmospheric conditions.

THE MASS PROFILE AND SHAPE OF BARS IN THE SPITZER SURVEY OF STELLAR STRUCTURE IN GALAXIES (S{sup 4}G): SEARCH FOR AN AGE INDICATOR FOR BARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Taehyun; Lee, Myung Gyoon; Sheth, Kartik

2015-01-20

We have measured the radial light profiles and global shapes of bars using two-dimensional 3.6 μm image decompositions for 144 face-on barred galaxies from the Spitzer Survey of Stellar Structure in Galaxies. The bar surface brightness profile is correlated with the stellar mass and bulge-to-total (B/T) ratio of their host galaxies. Bars in massive and bulge-dominated galaxies (B/T > 0.2) show a flat profile, while bars in less massive, disk-dominated galaxies (B/T ∼ 0) show an exponential, disk-like profile with a wider spread in the radial profile than in the bulge-dominated galaxies. The global two-dimensional shapes of bars, however, are rectangular/boxy, independentmore » of the bulge or disk properties. We speculate that because bars are formed out of disks, bars initially have an exponential (disk-like) profile that evolves over time, trapping more disk stars to boxy bar orbits. This leads bars to become stronger and have flatter profiles. The narrow spread of bar radial profiles in more massive disks suggests that these bars formed earlier (z > 1), while the disk-like profiles and a larger spread in the radial profile in less massive systems imply a later and more gradual evolution, consistent with the cosmological evolution of bars inferred from observational studies. Therefore, we expect that the flatness of the bar profile can be used as a dynamical age indicator of the bar to measure the time elapsed since the bar formation. We argue that cosmic gas accretion is required to explain our results on bar profile and the presence of gas within the bar region.« less

Purely Dry Mergers do not Explain the Observed Evolution of Massive Early-type Galaxies since z ~ 1

NASA Astrophysics Data System (ADS)

Sonnenfeld, Alessandro; Nipoti, Carlo; Treu, Tommaso

2014-05-01

Several studies have suggested that the observed size evolution of massive early-type galaxies (ETGs) can be explained as a combination of dry mergers and progenitor bias, at least since z ~ 1. In this paper we carry out a new test of the dry-merger scenario based on recent lensing measurements of the evolution of the mass density profile of ETGs. We construct a theoretical model for the joint evolution of the size and mass density profile slope γ' driven by dry mergers occurring at rates given by cosmological simulations. Such dry-merger model predicts a strong decrease of γ' with cosmic time, inconsistent with the almost constant γ' inferred from observations in the redshift range 0 < z < 1. We then show with a simple toy model that a modest amount of cold gas in the mergers—consistent with the upper limits on recent star formation in ETGs—is sufficient to reconcile the model with measurements of γ'. By fitting for the amount of gas accreted during mergers, we find that models with dissipation are consistent with observations of the evolution in both size and density slope, if ~4% of the total final stellar mass arises from the gas accreted since z ~ 1. Purely dry merger models are ruled out at >99% CL. We thus suggest a scenario where the outer regions of massive ETGs grow by accretion of stars and dark matter, while small amounts of dissipation and nuclear star formation conspire to keep the mass density profile constant and approximately isothermal.

Voids in cosmological simulations over cosmic time

NASA Astrophysics Data System (ADS)

Wojtak, Radosław; Powell, Devon; Abel, Tom

2016-06-01

We study evolution of voids in cosmological simulations using a new method for tracing voids over cosmic time. The method is based on tracking watershed basins (contiguous regions around density minima) of well-developed voids at low redshift, on a regular grid of density field. It enables us to construct a robust and continuous mapping between voids at different redshifts, from initial conditions to the present time. We discuss how the new approach eliminates strong spurious effects of numerical origin when voids' evolution is traced by matching voids between successive snapshots (by analogy to halo merger trees). We apply the new method to a cosmological simulation of a standard Λ-cold-dark-matter cosmological model and study evolution of basic properties of typical voids (with effective radii 6 h-1 Mpc < Rv < 20 h-1 Mpc at redshift z = 0) such as volumes, shapes, matter density distributions and relative alignments. The final voids at low redshifts appear to retain a significant part of the configuration acquired in initial conditions. Shapes of voids evolve in a collective way which barely modifies the overall distribution of the axial ratios. The evolution appears to have a weak impact on mutual alignments of voids implying that the present state is in large part set up by the primordial density field. We present evolution of dark matter density profiles computed on isodensity surfaces which comply with the actual shapes of voids. Unlike spherical density profiles, this approach enables us to demonstrate development of theoretically predicted bucket-like shape of the final density profiles indicating a wide flat core and a sharp transition to high-density void walls.

Ancient duplications and functional divergence in the interferon regulatory factors of vertebrates provide insights into the evolution of vertebrate immune systems.

PubMed

Du, Kang; Zhong, Zaixuan; Fang, Chengchi; Dai, Wei; Shen, Yanjun; Gan, Xiaoni; He, Shunping

2018-04-01

Interferon regulatory factors (IRFs) were first discovered as transcription factors that regulate the transcription of human interferon (IFN)-β. Increasing evidence shows that they might be important players involved in Adaptive immune system (AIS) evolution. Although numbers of IRFs have been identified in chordates, the evolutionary history and functional diversity of this gene family during the early evolution of vertebrates have remained obscure. Using IRF HMM profile and HMMER searches, we identified 148 IRFs in 11 vertebrates and 4 protochordates. For them, we reconstructed the phylogenetic relationships, determined the synteny conservation, investigated the profile of natural selection, and analyzed the expression patterns in four "living fossil" vertebrates: lamprey, elephant shark, coelacanth and bichir. The results from phylogeny and synteny analysis imply that vertebrate IRFs evolved from three predecessors, instead of four as suggested in a previous study, as results from an ancient duplication followed by special expansions and lost during the vertebrate evolution. The profile of natural selection and expression reveals functional dynamics during the process. Together, they suggest that the 2nd whole-genome duplication (2WGD) provided raw materials for innovation in the IRF family, and that the birth of type-I IFN might be an important factor inducing the establishment of IRF-mediated immune networks. As a member involved in the AIS evolution, IRF provide insights into the process and mechanism involved in the complexity and novelties of vertebrate immune systems. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Recent evolution of 129I levels in the Nordic Seas and the North Atlantic Ocean.

PubMed

Vivo-Vilches, Carlos; López-Gutiérrez, José María; Periáñez, Raúl; Marcinko, Charlotte; Le Moigne, Frédéric; McGinnity, Paul; Peruchena, Juan Ignacio; Villa-Alfageme, María

2018-04-15

Most of the anthropogenic radionuclide 129 I released to the marine environment from the nuclear fuel reprocessing plants (NFRP) at Sellafield (England) and La Hague (France) is transported to the Arctic Ocean via the North Atlantic Current and the Norwegian Coastal Current. 129 I concentrations in seawater provides a powerful and well-established radiotracer technique to provide information about the mechanisms which govern water mass transport in the Nordic Seas and the Arctic Ocean and is gaining importance when coupled with other tracers (e.g. CFC, 236 U). In this work, 129 I concentrations in surface and depth profiles from the Nordic Seas and the North Atlantic (NA) Ocean collected from four different cruises between 2011 and 2012 are presented. This work allowed us to i) update information on 129 I concentrations in these areas, required for the accurate use of 129 I as a tracer of water masses; and ii) investigate the formation of deep water currents in the eastern part of the Nordic Seas, by the analysis of 129 I concentrations and temperature-salinity (T-S) diagrams from locations within the Greenland Sea Gyre. In the Nordic Seas, 129 I concentrations in seawater are of the order of 10 9 at·kg -1 , one or two orders of magnitude higher than those measured at the NA Ocean, not so importantly affected by the releases from the NFRP. 129 I concentrations of the order of 10 8 atoms·kg -1 at the Ellet Line and the PAP suggest a direct contribution from the NFRP in the NA Ocean. An increase in the concentrations in the Nordic Seas between 2002 and 2012 has been detected, which agrees with the temporal evolution of the 129 I liquid discharges from the NFRPs in years prior to this. Finally, 129 I profile concentrations, 129 I inventories and T-S diagrams suggest that deep water formation occurred in the easternmost area of the Nordic Seas during 2012. Copyright © 2017 Elsevier B.V. All rights reserved.

High-current fast electron beam propagation in a dielectric target.

PubMed

Klimo, Ondrej; Tikhonchuk, V T; Debayle, A

2007-01-01

Recent experiments demonstrate an efficient transformation of high intensity laser pulse into a relativistic electron beam with a very high current density exceeding 10(12) A cm(-2). The propagation of such a beam inside the target is possible if its current is neutralized. This phenomenon is not well understood, especially in dielectric targets. In this paper, we study the propagation of high current density electron beam in a plastic target using a particle-in-cell simulation code. The code includes both ionization of the plastic and collisions of newborn electrons. The numerical results are compared with a relatively simple analytical model and a reasonable agreement is found. The temporal evolution of the beam velocity distribution, the spatial density profile, and the propagation velocity of the ionization front are analyzed and their dependencies on the beam density and energy are discussed. The beam energy losses are mainly due to the target ionization induced by the self-generated electric field and the return current. For the highest beam density, a two-stream instability is observed to develop in the plasma behind the ionization front and it contributes to the beam energy losses.

Effect of oak wood barrel capacity and utilization time on phenolic and sensorial profile evolution of an Encruzado white wine.

PubMed

Nunes, Paulo; Muxagata, Sara; Correia, Ana C; Nunes, Fernando M; Cosme, Fernanda; Jordão, António M

2017-11-01

Several studies have reported the influence of diverse winemaking technologies in white wine characteristics. However, the impact of the use of different oak wood barrel capacities and utilization time on the evolution of white wine phenolic content and sensorial characteristics are not usually considered. Thus the aim of this work was to evaluate the effect of oak wood barrel capacity and utilization time on the evolution of phenolic compounds, browning potential index and sensorial profile of an Encruzado white wine. For the 180 aging days considered, the use of new oak wood barrels induced a greater increase in global phenolic composition, including several individual compounds, such as gallic and ellagic acid, independently of the barrel capacity. Tendency for a lesser increase of the browning potential index values was detected for white wines aged in new oak wood barrels. The sensorial profile evolution, showed significant differences only for the aroma descriptors, namely for 'wood aroma' and 'aroma intensity', white wine aged in 225 L new oak wood barrels being the highest scored. The results show that, in general, the use of different capacities and utilization time of oak wood barrels used for white wine aging could play an important role in white wine quality. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

The temporal evolution of explosive events and its implication on reconnection dynamics

NASA Astrophysics Data System (ADS)

Guo, L.; Liu, W.; De Pontieu, B.; Huang, Y. M.; Peter, H.; Bhattacharjee, A.

2017-12-01

Transition-region explosive events and other bursts seen in extreme UV light are characterized by broad spectral line profiles, and the more violent ones show a strong enhancement of emission. They are thought to be driven by magnetic reconnection, because of their characteristic spectral profiles often indicating strong Alfvénic flows, and because of the fact that they typically occur where magnetic flux concentrations of opposite polarity intersect. In this presentation, we will focus on the temporal evolution of transition-region explosive events. In particular, we will investigate fast onsets of these events and the rapid oscillations of intensity during these event. The fast onset refers to the beginning of an explosive event, where the intensities and the widths of its line profiles increase dramatically (often within less than 10 seconds) and the rapid oscillations of intensity refer to blinks of emission that usually last less than 10 seconds during the event. In order to interpret and understand underlying mechanisms of these observations, we conduct numerical simulation of an explosive event and calculate its spectra. We observe a similar temporal evolution in the synthetic Si IV spectra when the explosive event is driven by time-dependent reconnection—plasmoid instability. The qualitative agreement between observations and simulations suggests that the temporal evolution of Si IV spectra of explosive events are closely related to reconnection dynamics.

Reynolds stress flow shear and turbulent energy transfer in reversed field pinch configuration

NASA Astrophysics Data System (ADS)

Vianello, Nicola; Spolaore, Monica; Serianni, Gianluigi; Regnoli, Giorgio; Spada, Emanuele; Antoni, Vanni; Bergsåker, Henric; Drake, James R.

2003-10-01

The role of Reynolds Stress tensor on flow generation in turbulent fluids and plasmas is still an open question and the comprehension of its behavior may assist the understanding of improved confinement scenario. It is generally believed that shear flow generation may occur by an interaction of the turbulent Reynolds stress with the shear flow. It is also generally believed that this mechanism may influence the generation of zonal flow shears. The evaluation of the complete Reynolds Stress tensor requires contemporary measurements of its electrostatic and magnetic part: this requirement is more restrictive for Reversed Field Pinch configuration where magnetic fluctuations are larger than in tokamak . A new diagnostic system which combines electrostatic and magnetic probes has been installed in the edge region of Extrap-T2R reversed field pinch. With this new probe the Reynolds stress tensor has been deduced and its radial profile has been reconstructed on a shot to shot basis exploring differen plasma conditions. These profiles have been compared with the naturally occurring velocity flow profile, in particular during Pulsed Poloidal Current Drive experiment, where a strong variation of ExB flow radial profile has been registered. The study of the temporal evolution of Reynolds stress reveals the appearance of strong localized bursts: these are considered in relation with global MHD relaxation phenomena, which naturally occur in the core of an RFP plasma sustaining its configuration.

Determining rates of chemical weathering in soils - Solute transport versus profile evolution

USGS Publications Warehouse

Stonestrom, David A.; White, A.F.; Akstin, K.C.

1998-01-01

SiO2 fluxes associated with contemporary solute transport in three deeply weathered granitoid profiles are compared to bulk SiO2 losses that have occurred during regolith development. Climates at the three profiles range from Mediterranean to humid to tropical. Due to shallow impeding alluvial layers at two of the profiles, and seasonally uniform rainfall at the third, temporal variations in hydraulic and chemical state variables are largely attenuated below depths of 1-2 m. This allows current SiO2 fluxes below the zone of seasonal variations to be estimated from pore-water concentrations and average hydraulic flux densities. Mean-annual SiO2 concentrations were 0.1-1.5 mM. Hydraulic conductivities for the investigated range of soil-moisture saturations ranged from 10-6 m s-1. Estimated hydraulic flux densities for quasi-steady portions of the profiles varied from 6 x 10-9 to 14 x 10-9 m s-1 based on Darcy's law and field measurements of moisture saturations and pressure heads. Corresponding fluid-residence times in the profiles ranged from 10 to 44 years. Total SiO2 losses, based on chemical and volumetric changes in the respective profiles, ranged from 19 to 110 kmoles SiO2 m-2 of land surface as a result of 0.2-0.4 Ma of chemical weathering. Extrapolation of contemporary solute fluxes to comparable time periods reproduced these SiO2 losses to about an order of magnitude. Despite the large range and non-linearity of measured hydraulic conductivities, solute transport rates in weathering regoliths can be estimated from characterization of hydrologic conditions at sufficiently large depths. The agreement suggests that current weathering rates are representative of long-term average weathering rates in the regoliths.SiO2 fluxes associated with contemporary solute transport in three deeply weathered granitoid profiles are compared to bulk SiO2 losses during regolith development. Due to shallow impeding alluvial layers at two of the profiles, and seasonally uniform rainfall at the third, temporal variations in hydraulic and chemical state variables are largely attenuated below depths of 1-2 m. Hydraulic conductivities for the investigated range of soil-moisture saturations of 10-6 m/s-1. Estimated hydraulic flux densities for quasi-steady portions of the profiles varied from 6??10-9 to 14??10-9 m/s based on Darcy's law and field measurements of moisture saturations and pressure heads.

Physical experiments and analysis on the generation and evolution of tsunami-induced turbulent coherent structures

NASA Astrophysics Data System (ADS)

Kalligeris, Nikos; Lynett, Patrick

2017-11-01

Numerous historical accounts describe the formation of ``whirpools'' inside ports and harbors during tsunami events, causing port operation disruptions. Videos from the Japan 2011 tsunami revealed complex nearshore flow patters, resulting from the interaction of tsunami-induced currents with the man-made coastline, and the generation of large eddies (or turbulent coherent structures) in numerous ports and harbors near the earthquake epicenter. The aim of this work is to study the generation and evolution of tsunami-induced turbulent coherent structures (TCS) in a well-controlled environment using realistic scaling. A physical configuration is created in the image of a port entrance at a scale of 1:27 and a small-amplitude, long period wave creates a transient flow through the asymmetric harbor channel. A separated region forms, which coupled with the transient flow, leads to the formation of a stable monopolar TCS. The surface flow is examined through mono- and stereo-PTV techniques to extract surface velocity vectors. Surface velocity maps and vortex flow profiles are used to study the experimental TCS generation and evolution, and characterize the TCS structure. Analytical tools are used to describe the TCS growth rate and kinetic energy decay. This work was funded by the National Science Foundation NEES Research program, with Award Number 1135026.

Evidence for Divergent Evolution of Growth Temperature Preference in Sympatric Saccharomyces Species

PubMed Central

Gonçalves, Paula; Valério, Elisabete; Correia, Cláudia; de Almeida, João M. G. C. F.; Sampaio, José Paulo

2011-01-01

The genus Saccharomyces currently includes eight species in addition to the model yeast Saccharomyces cerevisiae, most of which can be consistently isolated from tree bark and soil. We recently found sympatric pairs of Saccharomyces species, composed of one cryotolerant and one thermotolerant species in oak bark samples of various geographic origins. In order to contribute to explain the occurrence in sympatry of Saccharomyces species, we screened Saccharomyces genomic data for protein divergence that might be correlated to distinct growth temperature preferences of the species, using the dN/dS ratio as a measure of protein evolution rates and pair-wise species comparisons. In addition to proteins previously implicated in growth at suboptimal temperatures, we found that glycolytic enzymes were among the proteins exhibiting higher than expected divergence when one cryotolerant and one thermotolerant species are compared. By measuring glycolytic fluxes and glycolytic enzymatic activities in different species and at different temperatures, we subsequently show that the unusual divergence of glycolytic genes may be related to divergent evolution of the glycolytic pathway aligning its performance to the growth temperature profiles of the different species. In general, our results support the view that growth temperature preference is a trait that may have undergone divergent selection in the course of ecological speciation in Saccharomyces. PMID:21674061

FAILURE OF A NEUTRINO-DRIVEN EXPLOSION AFTER CORE-COLLAPSE MAY LEAD TO A THERMONUCLEAR SUPERNOVA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kushnir, Doron; Katz, Boaz, E-mail: kushnir@ias.edu

We demonstrate that ∼10 s after the core-collapse of a massive star, a thermonuclear explosion of the outer shells is possible for some (tuned) initial density and composition profiles, assuming that the neutrinos failed to explode the star. The explosion may lead to a successful supernova, as first suggested by Burbidge et al. We perform a series of one-dimensional (1D) calculations of collapsing massive stars with simplified initial density profiles (similar to the results of stellar evolution calculations) and various compositions (not similar to 1D stellar evolution calculations). We assume that the neutrinos escaped with a negligible effect on themore » outer layers, which inevitably collapse. As the shells collapse, they compress and heat up adiabatically, enhancing the rate of thermonuclear burning. In some cases, where significant shells of mixed helium and oxygen are present with pre-collapsed burning times of ≲100 s (≈10 times the free-fall time), a thermonuclear detonation wave is ignited, which unbinds the outer layers of the star, leading to a supernova. The energy released is small, ≲10{sup 50} erg, and negligible amounts of synthesized material (including {sup 56}Ni) are ejected, implying that these 1D simulations are unlikely to represent typical core-collapse supernovae. However, they do serve as a proof of concept that the core-collapse-induced thermonuclear explosions are possible, and more realistic two-dimensional and three-dimensional simulations are within current computational capabilities.« less

Two-stage magmatism during the evolution of the transitional Ethiopian rift

NASA Astrophysics Data System (ADS)

Cornwell, D. G.; England, R. W.; Maguire, P. K.; Kendall, M.; Stuart, G. W.

2008-12-01

The Ethiopian rift marks the transition between continental rifting and incipient seafloor spreading. The Ethiopia Afar Geoscientific Lithospheric Experiment (EAGLE) included a 400 km-long cross-rift profile with 97 broadband passive seismometers with the aim to investigate the change from mechanical to magmatic extension by defining the lithospheric structure and extent of magmatism beneath the rift. Complimentary studies of P-wave receiver functions, shear-wave splitting and teleseismic earthquake arrival times show that the lithospheric structure is inherently different beneath the north-western rift flank, rift valley and south- eastern rift flank, with contrasting crustal thickness and composition, upper mantle velocity and lithospheric anisotropy. Two stages of magmatic addition are interpreted: 1) a 6--18 km-thick underplate lens at the base of the crust, which probably formed synchronous with an Oligocene flood basalt event (and therefore pre-dates the adjacent rifting by ~20 Myr); and 2) a 20--30 km-wide zone of intense dyking and partial melt, which most likely pervades the entire crust beneath the rift valley and marks the locus of current rift extension. Furthermore, Precambrian collision-related lithospheric fabric is proposed to be the main source of the strong anisotropy that is observed along the entire cross-rift profile, which may be augmented by magmatism beneath the rift. An active, followed by a passive magma-assisted rifting model that is controlled by a combination of far-field plate stresses, the pre-existing lithospheric framework and magmatism is invoked to explain the rift evolution.

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

Considerations of Unmanned Aircraft Classification for Civil Airworthiness Standards

NASA Technical Reports Server (NTRS)

Maddalon, Jeffrey M.; Hayhurst, Kelly J.; Morris, A. Terry; Verstynen, Harry A.

2013-01-01

The use of unmanned aircraft in the National Airspace System (NAS) has been characterized as the next great step forward in the evolution of civil aviation. Although use of unmanned aircraft systems (UAS) in military and public service operations is proliferating, civil use of UAS remains limited in the United States today. This report focuses on one particular regulatory challenge: classifying UAS to assign airworthiness standards. Classification is useful for ensuring that meaningful differences in design are accommodated by certification to different standards, and that aircraft with similar risk profiles are held to similar standards. This paper provides observations related to how the current regulations for classifying manned aircraft, based on dimensions of aircraft class and operational aircraft categories, could apply to UAS. This report finds that existing aircraft classes are well aligned with the types of UAS that currently exist; however, the operational categories are more difficult to align to proposed UAS use in the NAS. Specifically, the factors used to group manned aircraft into similar risk profiles do not necessarily capture all relevant UAS risks. UAS classification is investigated through gathering approaches to classification from a broad spectrum of organizations, and then identifying and evaluating the classification factors from these approaches. This initial investigation concludes that factors in addition to those currently used today to group manned aircraft for the purpose of assigning airworthiness standards will be needed to adequately capture risks associated with UAS and their operations.

Global plasma oscillations in electron internal transport barriers in TCV

NASA Astrophysics Data System (ADS)

Udintsev, V. S.; Sauter, O.; Asp, E.; Fable, E.; Goodman, T. P.; Turri, G.; Graves, J. P.; Scarabosio, A.; Zhuang, G.; Zucca, C.; TCV Team

2008-12-01

In the Tokamak à Configuration Variable (TCV) (Hofmann F et al1994 Plasma Phys. Control. Fusion 36 B277), global plasma oscillations have been discovered in fully non-inductively driven plasmas featuring electron internal transport barriers (ITB) with strong ECRH/ECCD. These oscillations are linked to the destabilization and stabilization of MHD modes near the foot of the ITB and can lead to large oscillations of the total plasma current and line-averaged density, among others. They are intrinsically related to the fact that ITBs have large pressure gradients in a region of low magnetic shear. Therefore, the ideal MHD limit is relatively low and infernal modes can be unstable. Depending on the proximity to the ideal limit, small crashes or resistive modes can appear which affect the time evolution of the discharge. Being near marginal stability, the modes can self-stabilize due to the modification of the pressure gradient and local q-profile. The plasma recovers good confinement, reverses shear and the ITB builds up, until a new MHD mode is destabilized. TCV results show that this cycling behaviour can be controlled by modifying the current density or the pressure profiles, either with Ohmic current density perturbation or by modifying the ECH/ECCD power. It is demonstrated that many observations such as q >= 2 sawteeth, beta collapses, minor disruptions and oscillation regimes in ITBs can be assigned to the same physics origin: the proximity to the infernal mode stability limit.

Determining the vertical evolution of hydrodynamic parameters in weathered and fractured south Indian crystalline-rock aquifers: insights from a study on an instrumented site

NASA Astrophysics Data System (ADS)

Boisson, A.; Guihéneuf, N.; Perrin, J.; Bour, O.; Dewandel, B.; Dausse, A.; Viossanges, M.; Ahmed, S.; Maréchal, J. C.

2015-02-01

Due to extensive irrigation, most crystalline aquifers of south India are overexploited. Aquifer structure consists of an upper weathered saprolite followed by a fractured zone whose fracture density decreases with depth. To achieve sustainable management, the evolution of hydrodynamic parameters (transmissivity and storage coefficient) by depth in the south Indian context should be quantified. Falling-head borehole permeameter tests, injection tests, flowmeter profiles, single-packer tests and pumping tests were carried out in the unsaturated saprolite and saturated fractured granite. Results show that the saprolite is poorly transmissive (T fs = 3 × 10-7 to 8.5 × 10-8 m2 s-1) and that the most conductive part of the aquifer corresponds to the bottom of the saprolite and the upper part of the fractured rock (T = 1.0 × 10-3 to 7.0 × 10-4 m2 s-1). The transmissivity along the profile is mostly controlled by two distinct conductive zones without apparent vertical hydraulic connection. The transmissivity and storage coefficient both decrease with depth depending on the saturation of the main fracture zones, and boreholes are not exploitable after a certain depth (27.5 m on the investigated section). The numerous investigations performed allow a complete quantification with depth of the hydrodynamic parameters along the weathering profile, and a conceptual model is presented. Hydrograph observations (4 years) are shown to be relevant as a first-order characterization of the media and diffusivity evolution with depth. The evolution of these hydrodynamic parameters along the profile has a great impact on groundwater prospecting, exploitation and transport properties in such crystalline rock aquifers.

Genome size diversity in orchids: consequences and evolution

PubMed Central

Leitch, I. J.; Kahandawala, I.; Suda, J.; Hanson, L.; Ingrouille, M. J.; Chase, M. W.; Fay, M. F.

2009-01-01

Background The amount of DNA comprising the genome of an organism (its genome size) varies a remarkable 40 000-fold across eukaryotes, yet most groups are characterized by much narrower ranges (e.g. 14-fold in gymnosperms, 3- to 4-fold in mammals). Angiosperms stand out as one of the most variable groups with genome sizes varying nearly 2000-fold. Nevertheless within angiosperms the majority of families are characterized by genomes which are small and vary little. Species with large genomes are mostly restricted to a few monocots families including Orchidaceae. Scope A survey of the literature revealed that genome size data for Orchidaceae are comparatively rare representing just 327 species. Nevertheless they reveal that Orchidaceae are currently the most variable angiosperm family with genome sizes ranging 168-fold (1C = 0·33–55·4 pg). Analysing the data provided insights into the distribution, evolution and possible consequences to the plant of this genome size diversity. Conclusions Superimposing the data onto the increasingly robust phylogenetic tree of Orchidaceae revealed how different subfamilies were characterized by distinct genome size profiles. Epidendroideae possessed the greatest range of genome sizes, although the majority of species had small genomes. In contrast, the largest genomes were found in subfamilies Cypripedioideae and Vanilloideae. Genome size evolution within this subfamily was analysed as this is the only one with reasonable representation of data. This approach highlighted striking differences in genome size and karyotype evolution between the closely related Cypripedium, Paphiopedilum and Phragmipedium. As to the consequences of genome size diversity, various studies revealed that this has both practical (e.g. application of genetic fingerprinting techniques) and biological consequences (e.g. affecting where and when an orchid may grow) and emphasizes the importance of obtaining further genome size data given the considerable phylogenetic gaps which have been highlighted by the current study. PMID:19168860

Testing a one-dimensional prescription of dynamical shear mixing with a two-dimensional hydrodynamic simulation

NASA Astrophysics Data System (ADS)

Edelmann, P. V. F.; Röpke, F. K.; Hirschi, R.; Georgy, C.; Jones, S.

2017-07-01

Context. The treatment of mixing processes is still one of the major uncertainties in 1D stellar evolution models. This is mostly due to the need to parametrize and approximate aspects of hydrodynamics in hydrostatic codes. In particular, the effect of hydrodynamic instabilities in rotating stars, for example, dynamical shear instability, evades consistent description. Aims: We intend to study the accuracy of the diffusion approximation to dynamical shear in hydrostatic stellar evolution models by comparing 1D models to a first-principle hydrodynamics simulation starting from the same initial conditions. Methods: We chose an initial model calculated with the stellar evolution code GENEC that is just at the onset of a dynamical shear instability but does not show any other instabilities (e.g., convection). This was mapped to the hydrodynamics code SLH to perform a 2D simulation in the equatorial plane. We compare the resulting profiles in the two codes and compute an effective diffusion coefficient for the hydro simulation. Results: Shear instabilities develop in the 2D simulation in the regions predicted by linear theory to become unstable in the 1D stellar evolution model. Angular velocity and chemical composition is redistributed in the unstable region, thereby creating new unstable regions. After a period of time, the system settles in a symmetric, steady state, which is Richardson stable everywhere in the 2D simulation, whereas the instability remains for longer in the 1D model due to the limitations of the current implementation in the 1D code. A spatially resolved diffusion coefficient is extracted by comparing the initial and final profiles of mean atomic mass. Conclusions: The presented simulation gives a first insight on hydrodynamics of shear instabilities in a real stellar environment and even allows us to directly extract an effective diffusion coefficient. We see evidence for a critical Richardson number of 0.25 as regions above this threshold remain stable for the course of the simulation. The movie of the simulation is available at http://www.aanda.org

VICI (Venus In Situ Composition Investigations): The Next Step in Understanding Venus Climate Evolution

NASA Astrophysics Data System (ADS)

Glaze, L. S.; Garvin, J. B.

2017-12-01

Venus provides a natural laboratory to explore an example of terrestrial planet evolution that may be cosmically ubiquitous. By better understanding the composition of the Venus atmosphere and surface, we can better constrain the efficiency of the Venusian greenhouse. VICI is a proposed NASA New Frontiers mission that delivers two landers to Venus on two separate Venus fly-bys. Following six orbital remote sensing missions to Venus (since 1978), VICI would be the first mission to land on the Venus surface since 1985, and the first U.S. mission to enter the Venus atmosphere in 49 years. The four major VICI science objectives are: Atmospheric origin and evolution: Understand the origin of the Venus atmosphere, how it has evolved, including how recently Venus lost its oceans, and how and why it is different from the atmospheres of Earth and Mars, through in situ measurements of key noble gases, nitrogen, and hydrogen. Atmospheric composition and structure: Reveal the unknown chemical processes and structure in Venus' deepest atmosphere that dominate the current climate through two comprehensive, in situ vertical profiles. Surface properties and geologic evolution: For the first time ever, explore the tessera from the surface, specifically to test hypotheses of ancient content-building cycles, erosion, and links to past climates using multi-point mineralogy, elemental chemistry, imaging and topography. Surface-atmosphere interactions: Characterize Venus' surface weathering environment and provide insight into the sulfur cycle at the surface-atmosphere interface by integrating rich atmospheric composition and structure datasets with imaging, surface mineralogy, and elemental rock composition. VICI is designed to study Venus' climate history through detailed atmospheric composition measurements not possible on earlier missions. In addition, VICI images the tessera surface during descent enabling detailed topography to be generated. Finally, VICI makes multiple elemental chemistry measurements, including depth profiles through the weathering rind and subsurface, and the first ever direct mineralogy measurements on the Venus surface. VICI's payloads build on the success of the Mars Science Laboratory (MSL) by carrying the same instrumentation that has delivered high-impact science results on Mars.

Nonlinear evolution of three-dimensional instabilities of thin and thick electron scale current sheets: Plasmoid formation and current filamentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jain, Neeraj; Büchner, Jörg; Max Planck Institute for Solar System Research, Justus-Von-Liebig-Weg-3, Göttingen

Nonlinear evolution of three dimensional electron shear flow instabilities of an electron current sheet (ECS) is studied using electron-magnetohydrodynamic simulations. The dependence of the evolution on current sheet thickness is examined. For thin current sheets (half thickness =d{sub e}=c/ω{sub pe}), tearing mode instability dominates. In its nonlinear evolution, it leads to the formation of oblique current channels. Magnetic field lines form 3-D magnetic spirals. Even in the absence of initial guide field, the out-of-reconnection-plane magnetic field generated by the tearing instability itself may play the role of guide field in the growth of secondary finite-guide-field instabilities. For thicker current sheetsmore » (half thickness ∼5 d{sub e}), both tearing and non-tearing modes grow. Due to the non-tearing mode, current sheet becomes corrugated in the beginning of the evolution. In this case, tearing mode lets the magnetic field reconnect in the corrugated ECS. Later thick ECS develops filamentary structures and turbulence in which reconnection occurs. This evolution of thick ECS provides an example of reconnection in self-generated turbulence. The power spectra for both the thin and thick current sheets are anisotropic with respect to the electron flow direction. The cascade towards shorter scales occurs preferentially in the direction perpendicular to the electron flow.« less

Early Stage Evolution of Nourished Beach under High-energy, Macro-tidal Environment

NASA Astrophysics Data System (ADS)

Liu, J. H.; Cai, F.; Zhang, Z. W.; Li, B.

2017-02-01

Beach planform evolution, profile equilibration and sediment grain size change have been studied during the first 4 months from 4th September to 24th December 2011 after the construction of beach nourishment project at Longfengtou Beach, Haitan Bay. Monthly beach profiles, shoreline surveys, sediment sampling and nearshore wave measurements were carried out after implementation of the 1.3km long nourishment project which was completed on 20th August 2011. This study indicates that: (1) rapid beach profile equilibration occurred in the early stage after the construction of the project. A null point was observed, which is equal to the height of mean high tide, basically kept dynamic stable during the process of profile evolution. Shoreface sediment accumulated beneath the height of this point while erosion happened above it, the slope between the beach berm and the landward edge of low tidal zone became more gradual accompanied with seaward transportation of beach sediment. The velocity of beach slope adjustment in earlier period is faster than later. (2) Beach planform adjustment initiated simultaneously with the combination of the process of profile equilibration and longshore sediment transport. Shoreline retreated with an average distance of 11.1m and maximum of 31.02m from 4th September to 24th December, erosion in the south part was more serious than in the north, and 3 erosion hot spots were found along the coast. (3) Sediment redistributed with cross-shore profile equilibration, it showed a pattern across beach profile as medium sand (0.4-0.5mm) in beach berm, smaller (0.3-0.4mm) in high and middle tidal zone, coarse sand(0.6-1mm) in beach slope transitional zone, fine sand(0.1-0.25mm) in low tidal zone. The sediment grain size change of foreshore was rapidly response to the passage of storm surge.

Sedimentary infilling of bedrock-controlled palaeo-embayments off Cape Trafalgar, Strait of Gibraltar (Gulf of Cadiz)

NASA Astrophysics Data System (ADS)

de Castro, Sandra; Lobo, Francisco J.

2018-02-01

This study investigates two bedrock-controlled palaeo-coastal embayments on the Barbate Platform off Cape Trafalgar near the Strait of Gibraltar (Gulf of Cadiz shelf, SW Iberian Peninsula), aiming to reveal their infilling dynamics and the influence of rocky outcrops on shallow-water hydrodynamics and sediment transport. The approach relies on detailed multibeam bathymetric data, high-resolution seismic profiles and tidal current simulations. Elongated rocky outcrops formed a palaeo-coast when sea level was approximately 35 to 20 m below that of the present day, and bound a relatively flat area. However, the seismic profiles enabled to distinguish two main troughs (A and B) that were infilled following a distinctive evolution during the last transgression. Five seismic units were identified (I to V, from base to top). Deposit A is composed of seismic units II to V and is interpreted as a marine embayment infill, here termed the Barbate palaeo-embayment (BPE). Deposit B is composed of seismic units I to IV and is interpreted as a palaeo-valley infill, here termed the Barbate palaeo-valley (BPV). The complex internal stratigraphic architecture depicts an overall evolution from tidal/fluvial deposits to shallow-water marine deposits. Most significant is the occurrence of coupled tidal flats/estuarine sand bars constituting the infilling of the BPE; this suggests the persistence of a high-energy current in a shallow, confined embayment, which was amplified by the rocky outcrop constrictions and possibly facilitated by the episodic movement of a normal fault. In contrast to this active setting, the nearby straight and narrow BPV was subjected to lower-energy infilling dynamics during its initial flooding phases. There, tidal activity was possibly reduced by the straight morphology of the valley and the occurrence of a topographic constriction (i.e. the Barbate Passage) at the mouth of the valley.

Sexual selection and genital evolution: an overview.

PubMed

Shamloul, Rany; el-Sakka, Ahmed; Bella, Anthony J

2010-05-01

Genital morphology (especially male) among the animal kingdom is characterized by extensive differences that even members of closely related species with similar general morphology may have remarkably diverse genitalia. To present the sexual medicine specialist with a basic understanding of the current hypotheses on genital evolution with an emphasis on the sexual selection theories. A review of current literature on the theories of genital evolution. Analysis of the supporting evidence for the sexual selection theories of genital evolution. Several theories have been proposed to explain genital evolution. Currently, the sexual selection theories are being considered to present valid and solid evidence explaining genital evolution. However, other theories, including sexual conflict, are still being investigated. All theories of genital evolution have their own weaknesses and strengths. Given that many complex biological mechanisms, mostly unknown yet, are involved in the process of genital evolution, it is thus reasonable to conclude that not one theory can independently explain genital evolution. It is likely that these mechanisms may prove to have synergistic rather than exclusive effects.

Determining the near-surface current profile from measurements of the wave dispersion relation

NASA Astrophysics Data System (ADS)

Smeltzer, Benjamin; Maxwell, Peter; Aesøy, Eirik; Ellingsen, Simen

2017-11-01

The current-induced Doppler shifts of waves can yield information about the background mean flow, providing an attractive method of inferring the current profile in the upper layer of the ocean. We present measurements of waves propagating on shear currents in a laboratory water channel, as well as theoretical investigations of inversion techniques for determining the vertical current structure. Spatial and temporal measurements of the free surface profile obtained using a synthetic Schlieren method are analyzed to determine the wave dispersion relation and Doppler shifts as a function of wavelength. The vertical current profile can then be inferred from the Doppler shifts using an inversion algorithm. Most existing algorithms rely on a priori assumptions of the shape of the current profile, and developing a method that uses less stringent assumptions is a focus of this study, allowing for measurement of more general current profiles. The accuracy of current inversion algorithms are evaluated by comparison to measurements of the mean flow profile from particle image velocimetry (PIV), and a discussion of the sensitivity to errors in the Doppler shifts is presented.

Orogen-parallel variation in exhumation and its influence on critical taper evolution: The case of the Emilia-Romagna Apennine (Italy)

NASA Astrophysics Data System (ADS)

Bonini, Marco

2018-03-01

The Northern Apennine prowedge exposes two adjacent sectors showing a marked along-strike change in erosion intensity, namely the Emilia Apennine to the northwest and the Romagna Apennine to the southeast. This setting has resulted from Pliocene erosion (≤5 Ma) and exhumation, which have affected the whole Romagna sector and mostly the watershed ridge in Emilia. Such an evolution has conceivably influenced the equilibrium of this fold-and-thrust belt, which can be evaluated in terms of critical Coulomb wedge theory. The present state of the thrust wedge has been assessed by crosschecking wedge tapers measured along transverse profiles with fluid pressure values inferred from deep wellbores. The interpretation of available data suggests that both Emilia and Romagna are currently overcritical. This condition is compatible with the presence in both sectors of active NE-dipping normal faults, which would work to decrease the surface slope of the orogenic wedge. However, the presence of Late Miocene-Pliocene passive-roof and out-of-sequence thrusts in Romagna may reveal a past undercritical wedge state ensuing during the regional erosion phase, thereby implying that the current overcritical condition would be a recent feature. The setting of the Emilia Apennine (i.e., strong axial exhumation and limited erosion of the prowedge) suggests instead a long lasting overcritical wedge, which was probably contemporaneous with the Pliocene undercritical wedge in Romagna. The reasons for this evolution are still unclear, although they may be linked to lithosphere-scale processes that have promoted the uplift of Romagna relative to Emilia. The lessons from the Northern Apennine thus suggest that erosion and exhumation have the ability to produce marked along-strike changes in the equilibrium of a fold-and-thrust belt.

Exploiting coastal altimetry to improve the surface circulation scheme over the central Mediterranean Sea

NASA Astrophysics Data System (ADS)

Jebri, Fatma; Birol, Florence; Zakardjian, Bruno; Bouffard, Jérome; Sammari, Cherif

2016-07-01

This work is the first study exploiting along track altimetry data to observe and monitor coastal ocean features over the transition area between the western and eastern Mediterranean Basins. The relative performances of both the AVISO and the X-TRACK research regional altimetric data sets are compared using in situ observations. Both products are cross validated with tide gauge records. The altimeter-derived geostrophic velocities are also compared with observations from a moored Acoustic Doppler Current Profiler. Results indicate the good potential of satellite altimetry to retrieve dynamic features over the area. However, X-TRACK shows a more homogenous data coverage than AVISO, with longer time series in the 50 km coastal band. The seasonal evolution of the surface circulation is therefore analyzed by conjointly using X-TRACK data and remotely sensed sea surface temperature observations. This combined data set clearly depicts different current regimes and bifurcations, which allows us to propose a new seasonal circulation scheme for the central Mediterranean. The analysis shows variations of the path and temporal behavior of the main circulation features: the Atlantic Tunisian Current, the Atlantic Ionian Stream, the Atlantic Libyan Current, and the Sidra Gyre. The resulting bifurcating veins of these currents are also discussed, and a new current branch is observed for the first time.

Pretangles and neurofibrillary changes: similarities and differences between AD and CBD based on molecular and morphological evolution.

PubMed

Uchihara, Toshiki

2014-12-01

Pretangles are cytoplasmic tau immunoreactivity in neurons without apparent formation of fibrillary structures. In Alzheimer disease, such tau deposition is considered to represent a premature state prior to fibril formation (AD-pretangles), later to form neurofibrillary tangles and finally ghost tangles. This morphological evolution from pretangles to ghost tangles is in parallel with their profile shift from four repeat (4R) tau-positive pretangles to three repeat (3R) tau-positive ghost tangles with both positive neurofibrillary tangles in between. This complementary shift of tau profile from 4R to 3R suggests that these tau epitopes are represented interchangeably along tangle evolution. Similar tau immunoreactivity without fibril formation is also observed in corticobasal degeneration (CBD-pretangles). CBD-pretangles and AD-pretangles share: (i) selective 4R tau immunoreactivity without involvement of 3R tau; and (ii) argyrophilia with Gallyas silver impregnation. However, CBD-pretangles neither evolve into ghost tangles nor exhibit 3R tau immunoreactivity even at the advanced stage. Because electron microscopic studies on these pretangles are quite limited, it remains to be clarified whether such differences in later evolution are related to their primary ultrastructures, potentially distinct between AD and CBD. As double staining for 3R and 4R tau clarified complementary shift from 4R to 3R tau along evolution from pretangles to ghost tangles, double immunoelectron microscopy, if possible, may clarify similar profile shifts in relation to each tau fibril at the ultrastructural dimension. This will provide a unique viewpoint on how molecular (epitope) representations are related to pathogenesis of fibrillary components. © 2014 Japanese Society of Neuropathology.

A Critical Fast Ion Beta in the Madison Symmetric Torus Reversed Field Pinch

NASA Astrophysics Data System (ADS)

Capecchi, William J.

The first fast-ion profile measurements have been made in a reversed-field pinch (RFP) plasma. A large population of fast-ions are deposited in the core of the Madison Symmetric Torus (MST) through use of a 1 MW neutral beam injector (NBI) giving rise to a variety of beam-driven instabilities. One such mode, the energetic-particle mode (EPM) has been shown to reduce fast-ion content in MST, evident through drops in signal levels of the advanced neutral particle analyzer (ANPA). EPMs in MST appear as bursts of magnetic fluctuations at a lab frequency of ˜100 kHz reaching peak amplitude and decaying away within 100 microseconds. A burst ensemble of the neutron data does not reveal a drop in neutron emission across a burst, implying the population of fast-ions transported by a burst constitute a small fraction of the total. The burst may also pitch-angle scatter out of the ANPA phase space or be transported to mid-radius where charge-exchange with the background neutrals or fast-ion orbit stochasticity may reduce fast-ion confinement. Data gathered from the expanded neutron diagnostic suite including a new collimated neutron detector (CiNDe) was used to reconstruct the fast-ion profile in MST and measure critical fast-ion beta quantities. Measurements were made in plasma conditions with varying magnetic field strength in order to investigate the interplay between the energetic particle (EP) drive and Alfven continuum damping. The measured values of the core fast-ion beta (7.5% (1.2%) in 300 (500) kA plasmas) are reduced from classical predictions (TRANSP predicts up to 10% core value) due to EPM activity. The frequency, magnitude, and rate of occurrence of the bursts depends on the tearing mode amplitude, Alfven continuum damping rate, fast-ion profile shape, and resonant orbit dynamics. Marginal stability was reached in both moderate- (300 kA) and high- (500 kA) current discharges, marked by sustained EPM activity and a saturated global neutron signal during NBI. The difference in profile shape is interpreted to be related to the core-most resonant tearing mode amplitude, as a larger core magnetic island moves the location of steepest fast-ion gradient further out in radius, resulting in lower confinement of the fast-ions. The reconstructed profile is more strongly peaked at lower current, consistent with a lower measured core-most tearing mode amplitude. A larger dataset at lower current gives enough temporal resolution to investigate the evolution of the fast-ion profile. The suppression of the core-most tearing mode amplitude during NBI results in a rapid and dynamically evolving fast-ion profile at the beginning of the NBI discharge and results in an initially broader profile early evolving into a more strongly peaked profile later in the NBI discharge.

Advanced Characterization Techniques for Sodium-Ion Battery Studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shadike, Zulipiya; Zhao, Enyue; Zhou, Yong-Ning

Sodium (Na)-ion batteries (NIBs) are considered promising alternative candidates to the well-commercialized lithium-ion batteries, especially for applications in large-scale energy storage systems. The electrochemical performance of NIBs such as the cyclability, rate capability, and voltage profiles are strongly dependent on the structural and morphological evolution, phase transformation, sodium-ion diffusion, and electrode/electrolyte interface reconstruction during charge–discharge cycling. Therefore, in-depth understanding of the structure and kinetics of electrode materials and the electrode/electrolyte interfaces is essential for optimizing current NIB systems and exploring new materials for NIBs. Recently, rapid progress and development in spectroscopic, microscopic, and scattering techniques have provided extensive insight intomore » the nature of structural evolution, morphological changes of electrode materials, and electrode/electrolyte interface in NIBs. Here in this review, a comprehensive overview of both static (ex situ) and real-time (in situ or in operando) techniques for studying the NIBs is provided. Lastly, special focus is placed on how these techniques are applied to the fundamental investigation of NIB systems and what important results are obtained.« less

Advanced Characterization Techniques for Sodium-Ion Battery Studies

DOE PAGES

Shadike, Zulipiya; Zhao, Enyue; Zhou, Yong-Ning; ...

2018-02-19

Sodium (Na)-ion batteries (NIBs) are considered promising alternative candidates to the well-commercialized lithium-ion batteries, especially for applications in large-scale energy storage systems. The electrochemical performance of NIBs such as the cyclability, rate capability, and voltage profiles are strongly dependent on the structural and morphological evolution, phase transformation, sodium-ion diffusion, and electrode/electrolyte interface reconstruction during charge–discharge cycling. Therefore, in-depth understanding of the structure and kinetics of electrode materials and the electrode/electrolyte interfaces is essential for optimizing current NIB systems and exploring new materials for NIBs. Recently, rapid progress and development in spectroscopic, microscopic, and scattering techniques have provided extensive insight intomore » the nature of structural evolution, morphological changes of electrode materials, and electrode/electrolyte interface in NIBs. Here in this review, a comprehensive overview of both static (ex situ) and real-time (in situ or in operando) techniques for studying the NIBs is provided. Lastly, special focus is placed on how these techniques are applied to the fundamental investigation of NIB systems and what important results are obtained.« less

Simulations of Precipitate Microstructure Evolution during Heat Treatment

NASA Astrophysics Data System (ADS)

Wu, Kaisheng; Sterner, Gustaf; Chen, Qing; Jou, Herng-Jeng; Jeppsson, Johan; Bratberg, Johan; Engström, Anders; Mason, Paul

Precipitation, a major solid state phase transformation during heat treatment processes, has for more than one century been intensively employed to improve the strength and toughness of various high performance alloys. Recently, sophisticated precipitation reaction models, in assistance with well-developed CALPHAD databases, provide an efficient and cost-effective way to tailor precipitate microstructures that maximize the strengthening effect via the optimization of alloy chemistries and heat treatment schedules. In this presentation, we focus on simulating precipitate microstructure evolution in Nickel-base superalloys under arbitrary heat treatment conditions. The newly-developed TC-PRISMA program has been used for these simulations, with models refined especially for non-isothermal conditions. The effect of different cooling profiles on the formation of multimodal microstructures has been thoroughly examined in order to understand the underlying thermodynamics and kinetics. Meanwhile, validations against several experimental results have been carried out. Practical issues that are critical to the accuracy and applicability of the current simulations, such as modifications that overcome mean-field approximations, compatibility between CALPHAD databases, selection of key parameters (particularly interfacial energy and nucleation site densities), etc., are also addressed.

Scaling Relations for Intercalation Induced Damage in Electrodes

DOE PAGES

Chen, Chien-Fan; Barai, Pallab; Smith, Kandler; ...

2016-04-02

Mechanical degradation, owing to intercalation induced stress and microcrack formation, is a key contributor to the electrode performance decay in lithium-ion batteries (LIBs). The stress generation and formation of microcracks are caused by the solid state diffusion of lithium in the active particles. Here in this work, scaling relations are constructed for diffusion induced damage in intercalation electrodes based on an extensive set of numerical experiments with a particle-level description of microcrack formation under disparate operating and cycling conditions, such as temperature, particle size, C-rate, and drive cycle. The microcrack formation and evolution in active particles is simulated based onmore » a stochastic methodology. A reduced order scaling law is constructed based on an extensive set of data from the numerical experiments. The scaling relations include combinatorial constructs of concentration gradient, cumulative strain energy, and microcrack formation. Lastly, the reduced order relations are further employed to study the influence of mechanical degradation on cell performance and validated against the high order model for the case of damage evolution during variable current vehicle drive cycle profiles.« less

Evolution of separate screening soliton pairs in a biased series photorefractive crystal circuit.

PubMed

Liu, Jinsong; Hao, Zhonghua

2002-06-01

This paper presents calculations for an idea in photorefractive spatial soliton, namely, screening solitons form in a biased series photorefractive crystal circuit consisting of two photorefractive crystals connected electronically by electrode leads in a chain with a voltage source. A system of two coupled equations is derived under appropriate conditions for two-beam propagation in the crystal circuit. The possibility of obtaining steady-state bright and dark screening soliton solutions is investigated in one dimension and, the existence of dark-dark, bright-dark, and bright-bright separate screening soliton pairs in such a circuit is proved. The numerical results show that the two solitons in a soliton pair can affect each other by the light-induced current and their coupling can affect their spatial profiles, dynamical evolutions, stabilities, and self-deflection. Under the limit in which the optical wave has a spatial extent much less than the width of the crystal, only the dark soliton can affect the other soliton by the light-induced current, but the bright soliton cannot. For a bright-dark or dark-dark soliton pair, the dark soliton in a weak input intensity can be obtained for a larger nonlinearity than for a stronger input intensity. For a bright-dark soliton pair, increasing the input intensity of the dark soliton can increase the bending angle of the bright soliton. Some potential applications are discussed.

Harmonic plasma waves excitation and structure evolution of intense ion beams in background plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hu, Zhang-Hu, E-mail: zhanghu@dlut.edu.cn; Wang, You-Nian

2016-08-15

The long-term dynamic evolutions of intense ion beams in plasmas have been investigated with two-dimensional electromagnetic particle simulations, taking into account the effect of the two-stream instability between beam ions and plasma electrons. Depending on the initial beam radial density profile and velocity distribution, ring structures may be formed in the beam edge regions. At the later stage of beam-plasma interactions, the ion beams are strongly modulated by the two-stream instability and multiple density spikes are formed in the longitudinal direction. The formation of these density spikes is shown to result from the excitation of harmonic plasma waves when themore » instability gets saturated. Comparisons between the beam cases with initial flat-top and Gaussian radial density profiles are made, and a higher instability growth rate is observed for the flat-top profile case.« less

Structural evolution of self-ordered alumina tapered nanopores with 100 nm interpore distance

NASA Astrophysics Data System (ADS)

Li, Juan; Li, Congshan; Gao, Xuefeng

2011-10-01

We in-detail investigated the profile evolution processes of highly ordered alumina under the cyclic treatment of mild anodizing of aluminum foils in oxalic acid followed by etching in phosphoric acid. With the cyclic times increasing, the profiles of nanopores were gradually evolved into the parabola-like, trumpet-like and conical shape. Although the inserted etching itself nearly had no impact on the growth rate of the nanopores due to the rapid recovering of thinned barrier layer at the initial stage of next anodizing, overmuch etching could bring apparent side effects such as wall-breaking, thinning and taper-removing from the top down. The anodizing and etching kinetics and their synergetic effects in modulating different aspect ratios and open sizes of conical pores were studied systematically. These findings are helpful to tailor high-quality anodic alumina taper-pores with tunable profiles.

[Profile of patients with anophthalmic cavity: study at Faculdade de Medicina de Botucatu - UNESP].

PubMed

Narikawa, Silvia; Natsuaki, Kryscia Leiko; Fruet, Juliana; Padovani, Carlos Roberto; Schellini, Silvana Artioli

2011-01-01

To evaluate the profile of anophthalmic cavity carriers and patients' evolution with the employed treatments. Retrospective study carried out at Faculdade de Medicina de Botucatu, to evaluate the profile and the evolution of patients with anophthalmic cavity treated in our service. Data were evaluated according to the frequency of occurrence and analysis of association. Anophthalmic cavity was more frequently observed in young males, workers in activities carried on with their hands. Trauma and phthisis bulbi were the most frequent causes, with differences according to age and gender. The complications were high (57.1% of cases), the majority occurred belatedly. Trauma is still an important cause of loss of the eye. The complications during the follow-up of the patient are frequent, occurring in general, very late, which reinforces the need for periodic and prolonged monitoring of patients with anophthalmic cavity.

LABORATORY MEASUREMENTS OF WHITE DWARF PHOTOSPHERIC SPECTRAL LINES: Hβ

DOE Office of Scientific and Technical Information (OSTI.GOV)

Falcon, Ross E.; Gomez, T. A.; Montgomery, M. H.

2015-06-20

We spectroscopically measure multiple hydrogen Balmer line profiles from laboratory plasmas to investigate the theoretical line profiles used in white dwarf (WD) atmosphere models. X-ray radiation produced at the Z Pulsed Power Facility at Sandia National Laboratories initiates plasma formation in a hydrogen-filled gas cell, replicating WD photospheric conditions. Here we present time-resolved measurements of Hβ and fit this line using different theoretical line profiles to diagnose electron density, n{sub e}, and n = 2 level population, n{sub 2}. Aided by synthetic tests, we characterize the validity of our diagnostic method for this experimental platform. During a single experiment, wemore » infer a continuous range of electron densities increasing from n{sub e} ∼ 4 to ∼30 × 10{sup 16} cm{sup −3} throughout a 120-ns evolution of our plasma. Also, we observe n{sub 2} to be initially elevated with respect to local thermodynamic equilibrium (LTE); it then equilibrates within ∼55 ns to become consistent with LTE. This supports our electron-temperature determination of T{sub e} ∼ 1.3 eV (∼15,000 K) after this time. At n{sub e} ≳ 10{sup 17} cm{sup −3}, we find that computer-simulation-based line-profile calculations provide better fits (lower reduced χ{sup 2}) than the line profiles currently used in the WD astronomy community. The inferred conditions, however, are in good quantitative agreement. This work establishes an experimental foundation for the future investigation of relative shapes and strengths between different hydrogen Balmer lines.« less

Downstream evolution of the Kuroshio's time-varying transport and velocity structure

NASA Astrophysics Data System (ADS)

Andres, M.; Mensah, V.; Jan, S.; Chang, M.-H.; Yang, Y.-J.; Lee, C. M.; Ma, B.; Sanford, T. B.

2017-05-01

Observations from two companion field programs—Origins of the Kuroshio and Mindanao Current (OKMC) and Observations of Kuroshio Transport Variability (OKTV)—are used here to examine the Kuroshio's temporal and spatial evolution. Kuroshio strength and velocity structure were measured between June 2012 and November 2014 with pressure-sensor equipped inverted echo sounders (PIESs) and upward-looking acoustic Doppler current profilers (ADCPs) deployed across the current northeast of Luzon, Philippines, and east of Taiwan with an 8 month overlap in the two arrays' deployment periods. The time-mean net (i.e., integrated from the surface to the bottom) absolute transport increases downstream from 7.3 Sv (±4.4 Sv standard error) northeast of Luzon to 13.7 Sv (±3.6 Sv) east of Taiwan. The observed downstream increase is consistent with the return flow predicted by the simple Sverdrup relation and the mean wind stress curl field over the North Pacific (despite the complicated bathymetry and gaps along the North Pacific western boundary). Northeast of Luzon, the Kuroshio—bounded by the 0 m s-1 isotach—is shallower than 750 dbar, while east of Taiwan areas of positive flow reach to the seafloor (3000 m). Both arrays indicate a deep counterflow beneath the poleward-flowing Kuroshio (-10.3 ± 2.3 Sv by Luzon and -12.5 ± 1.2 Sv east of Taiwan). Time-varying transports and velocities indicate the strong influence at both sections of westward propagating eddies from the ocean interior. Topography associated with the ridges east of Taiwan also influences the mean and time-varying velocity structure there.

THE TOPOLOGY OF CANONICAL FLUX TUBES IN FLARED JET GEOMETRY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lavine, Eric Sander; You, Setthivoine, E-mail: Slavine2@uw.edu, E-mail: syou@aa.washington.edu

2017-01-20

Magnetized plasma jets are generally modeled as magnetic flux tubes filled with flowing plasma governed by magnetohydrodynamics (MHD). We outline here a more fundamental approach based on flux tubes of canonical vorticity, where canonical vorticity is defined as the circulation of the species’ canonical momentum. This approach extends the concept of magnetic flux tube evolution to include the effects of finite particle momentum and enables visualization of the topology of plasma jets in regimes beyond MHD. A flared, current-carrying magnetic flux tube in an ion-electron plasma with finite ion momentum is thus equivalent to either a pair of electron andmore » ion flow flux tubes, a pair of electron and ion canonical momentum flux tubes, or a pair of electron and ion canonical vorticity flux tubes. We examine the morphology of all these flux tubes for increasing electrical currents, different radial current profiles, different electron Mach numbers, and a fixed, flared, axisymmetric magnetic geometry. Calculations of gauge-invariant relative canonical helicities track the evolution of magnetic, cross, and kinetic helicities in the system, and show that ion flow fields can unwind to compensate for an increasing magnetic twist. The results demonstrate that including a species’ finite momentum can result in a very long collimated canonical vorticity flux tube even if the magnetic flux tube is flared. With finite momentum, particle density gradients must be normal to canonical vorticities, not to magnetic fields, so observations of collimated astrophysical jets could be images of canonical vorticity flux tubes instead of magnetic flux tubes.« less

The evolution of the metallicity gradient and the star formation efficiency in disc galaxies

NASA Astrophysics Data System (ADS)

Sillero, Emanuel; Tissera, Patricia B.; Lambas, Diego G.; Michel-Dansac, Leo

2017-12-01

We study the oxygen abundance profiles of the gas-phase components in hydrodynamical simulations of pre-prepared disc galaxies including major mergers, close encounters and isolated configurations. We analyse the evolution of the slope of oxygen abundance profiles and the specific star formation rate (sSFR) along their evolution. We find that galaxy-galaxy interactions could generate either positive or negative gas-phase oxygen profiles, depending on the state of evolution. Along the interaction, galaxies are found to have metallicity gradients and sSFR consistent with observations, on average. Strong gas inflows produced during galaxy-galaxy interactions or as a result of strong local instabilities in gas-rich discs are able to produce both a quick dilution of the central gas-phase metallicity and a sudden increase of the sSFR. Our simulations show that, during these events, a correlation between the metallicity gradients and the sSFR can be set up if strong gas inflows are triggered in the central regions in short time-scales. Simulated galaxies without experiencing strong disturbances evolve smoothly without modifying the metallicity gradients. Gas-rich systems show large dispersion along the correlation. The dispersion in the observed relation could be interpreted as produced by the combination of galaxies with different gas-richness and/or experiencing different types of interactions. Hence, our findings suggest that the observed relation might be the smoking gun of galaxies forming in a hierarchical clustering scenario.

A scaling law of radial gas distribution in disk galaxies

NASA Technical Reports Server (NTRS)

Wang, Zhong

1990-01-01

Based on the idea that local conditions within a galactic disk largely determine the region's evolution time scale, researchers built a theoretical model to take into account molecular cloud and star formations in the disk evolution process. Despite some variations that may be caused by spiral arms and central bulge masses, they found that many late-type galaxies show consistency with the model in their radial atomic and molecular gas profiles. In particular, researchers propose that a scaling law be used to generalize the gas distribution characteristics. This scaling law may be useful in helping to understand the observed gas contents in many galaxies. Their model assumes an exponential mass distribution with disk radius. Most of the mass are in atomic gas state at the beginning of the evolution. Molecular clouds form through a modified Schmidt Law which takes into account gravitational instabilities in a possible three-phase structure of diffuse interstellar medium (McKee and Ostriker, 1977; Balbus and Cowie, 1985); whereas star formation proceeds presumably unaffected by the environmental conditions outside of molecular clouds (Young, 1987). In such a model both atomic and molecular gas profiles in a typical galactic disk (as a result of the evolution) can be fitted simultaneously by adjusting the efficiency constants. Galaxies of different sizes and masses, on the other hand, can be compared with the model by simply scaling their characteristic length scales and shifting their radial ranges to match the assumed disk total mass profile sigma tot(r).

Measuring the Mass Distribution in Z is Approximately 0.2 Cluster Lenses with XMM, HST and CFHT

NASA Technical Reports Server (NTRS)

2004-01-01

Being the most massive gravitationally bound objects in the Universe, clusters of galaxies are prime targets for studies of structure formation and evolution. Specifically the comoving space density of virialized clusters of a given mass (or X-ray temperature), but also the frequency and degree of substructure, as well as the shape of the cluster mass profile are quantities whose current values and evolution as a function of lookback time can provide important constraints on the cosmological and physical parameters of structure formation theories. The project funded by NASA grant NAG 5-10041 intended to take such studies to a new level by combining observations of a well-selected cluster sample by three state-of-the-art telescopes: HST, to accurately measure the mass distribution in the cluster core (approx. 0.5 h(sup -1)(sub 50) Mpc) via strong gravitational lensing; CFHT, to measure the large scale mass distribution out to approx. 3 Mpc via weak lensing; and XMM, to measure the gas density and temperature distribution accurately on intermediate scales < 1.5 Mpc. XMM plays a pivotal role in this context as the calibration of X-ray mass measurements through accurate, spatially resolved X-ray temperature measurements (particularly in the cosmologically most sensitive range of kT> 5 keV) is central to the questions outlined above. This set of observations promised to yield the best cluster mass measurements obtained so far for a representative sample, thus allowing us to: 1) Measure the high-mass end of the local cluster mass function; 2) Test predictions of a universal cluster mass profile; 3) calibrate the mass-temperature and temperature-luminosity relations for clusters and the scatter around these relations, which is vital for studies of cluster evolution using the X-ray temperature and X-ray luminosity functions.

Compositional Evolution of Saturn's Ring: Ice, Tholin, and 'CHIRON'-Dust

NASA Technical Reports Server (NTRS)

Cuzzi, Jeffrey N.; Estrada, P. R.; DeVincenzi, Donald L. (Technical Monitor)

1996-01-01

We address compositional evolution in planetary ring systems subsequent to meteoroid bombardment. The huge surface area to mass ratio of planetary rings ensures the importance of this process, given currently expected values of meteoroid flux. We developed a model which includes both direct deposition of extrinsic meteoritic 'pollutants', and ballistic transport of the increasingly polluted ring material as impact ejecta. Certain aspects of the observed regional variations in ring color and albedo can be understood in terms of such a process. We conclude that the regional scale color and albedo differences between the C ring and B ring can be understood if all ring material began with the same composition (primarily water ice, based on other data, but colored by tiny amounts of non-icy, reddish absorber) and then evolved entirely by addition and mixing of extrinsic, neutrally colored, highly absorbing material. This conclusion is readily extended to the Cassini Division and its surroundings as well. Typical silicates are unable to satisfy the ring color, spectroscopic, and microwave absorption constraints either as intrinsic or extrinsic non-icy constituents. However, 'Titan Tholin' provides a satisfactory match for the inferred refractive indices of the 'pre-pollution' nonicy ring material. The extrinsic bombarding material is compatible with the properties of Halley or Chiron, but not with the properties of other 'red' primitive objects such as Pholus. We further demonstrate that the detailed radial profile of color across the abrupt B ring - C ring boundary is quite compatible with such a 'pollution transport' process, and that the shape of the profile can constrain key parameters in the model. We use the model to estimate the 'exposure age' of Saturn's rings to extrinsic meteoroid flux. We obtain a geologically young 'age' which is compatible with timescales estimated independently based on the evolution of ring structure due to ballistic transport, and also with other 'short timescales' estimated on the grounds of gravitational torques.

Time and space resolved current density mapping in three dimensions using magnetic field probe array in a high voltage coaxial gap

NASA Astrophysics Data System (ADS)

Cordaro, S. W.; Bott-Suzuki, S. C.

2017-12-01

We present an experimental analysis of the symmetry of current density in a coaxial geometry, diagnosed using a magnetic field probe array and calculations of the Fowler-Nordheim enhancement factor. Data were collected on the coaxial gap breakdown device (240 A, 25 kV, 150 ns, ˜0.1 Hz), and data from experiments using 2 different gap sizes and different penetration depths are compared over runs comprising 50 shots for each case. The magnetic field probe array quantifies the distribution of current density at three axial locations, on either sides of a vacuum breakdown, and tracks the evolution with time and space. The results show asymmetries in current density, which can be influenced by changes in the gap size and the penetration depth (of the center electrode into the outer electrode). For smaller gap sizes (400 μm), symmetric current profiles were not observed, and the change in the penetration depth changes both the symmetric behavior of the current density and the enhancement factor. For larger gaps (900 μm), current densities were typically more uniform and less influenced by the penetration depth, which is reflected in the enhancement factor values. It is possible that the change in inductance caused by the localization of current densities plays a role in the observed behavior.

Experimental and modeling uncertainties in the validation of lower hybrid current drive

DOE Office of Scientific and Technical Information (OSTI.GOV)

Poli, F. M.; Bonoli, P. T.; Chilenski, M.

Our work discusses sources of uncertainty in the validation of lower hybrid wave current drive simulations against experiments, by evolving self-consistently the magnetic equilibrium and the heating and current drive profiles, calculated with a combined toroidal ray tracing code and 3D Fokker–Planck solver. The simulations indicate a complex interplay of elements, where uncertainties in the input plasma parameters, in the models and in the transport solver combine and compensate each other, at times. It is concluded that ray-tracing calculations should include a realistic representation of the density and temperature in the region between the confined plasma and the wall, whichmore » is especially important in regimes where the LH waves are weakly damped and undergo multiple reflections from the plasma boundary. Uncertainties introduced in the processing of diagnostic data as well as uncertainties introduced by model approximations are assessed. We show that, by comparing the evolution of the plasma parameters in self-consistent simulations with available data, inconsistencies can be identified and limitations in the models or in the experimental data assessed.« less

Nanopatterning on calixarene thin films via low-energy field-emission scanning probe lithography.

PubMed

He, Xiaoyue; Li, Peng; Liu, Pengchong; Zhang, Xiaoxian; Zhou, Xiangqian; Liu, Wei; Qiu, Xiaohui

2018-08-10

Field-emitted, low-energy electrons from the conducting tip of an atomic force microscope were adopted for nanolithography on calixarene ultrathin films coated on silicon wafers. A structural evolution from protrusion to depression down to a 30 nm spatial resolution was reproducibly obtained by tuning the sample voltage and exposure current in the lithography process. Close analyses of the profiles showed that the nanostructures formed by a single exposure with a high current are almost identical to those created by cumulative exposure with a lower current but an equal number of injected electrons. Surface potential imaging by Kelvin probe force microscopy found a negatively charged region surrounding the groove structures once the structures were formed. We conclude that the mechanism related to the formation of a temporary negative state and molecule decomposition, rather than thermal ablation, is responsible for the low-energy field-emission electron lithography on a calixarene molecular resist. We hope that our elucidation of the underlying mechanism is helpful for molecular resist design and further improving the reproducibility and throughput of nanolithography.

Experimental and modeling uncertainties in the validation of lower hybrid current drive

DOE PAGES

Poli, F. M.; Bonoli, P. T.; Chilenski, M.; ...

2016-07-28

Our work discusses sources of uncertainty in the validation of lower hybrid wave current drive simulations against experiments, by evolving self-consistently the magnetic equilibrium and the heating and current drive profiles, calculated with a combined toroidal ray tracing code and 3D Fokker–Planck solver. The simulations indicate a complex interplay of elements, where uncertainties in the input plasma parameters, in the models and in the transport solver combine and compensate each other, at times. It is concluded that ray-tracing calculations should include a realistic representation of the density and temperature in the region between the confined plasma and the wall, whichmore » is especially important in regimes where the LH waves are weakly damped and undergo multiple reflections from the plasma boundary. Uncertainties introduced in the processing of diagnostic data as well as uncertainties introduced by model approximations are assessed. We show that, by comparing the evolution of the plasma parameters in self-consistent simulations with available data, inconsistencies can be identified and limitations in the models or in the experimental data assessed.« less

Experimental and Numerical Study of Drift Alfv'en Waves in LAPD

NASA Astrophysics Data System (ADS)

Friedman, Brett; Popovich, P.; Carter, T. A.; Auerbach, D.; Schaffner, D.

2009-11-01

We present a study of drift Alfv'en waves in linear geometry using experiments in the Large Plasma Device (LAPD) at UCLA and simulations from the Boundary Turbulence code (BOUT). BOUT solves the 3D time evolution of plasma parameters and turbulence using Braginskii fluid equations. First, we present a verification study of linear drift Alfven wave physics in BOUT, which has been modified to simulate the cylindrical geometry of LAPD. Second, we present measurements of density and magnetic field fluctuations in the LAPD plasma and the correlation of these fluctuations as a function of plasma parameters, including strength of the background field and discharge current. We also compare the measurements to nonlinear BOUT calculations using experimental LAPD profiles.

Study of a comet rendezvous mission, volume 1

NASA Technical Reports Server (NTRS)

1972-01-01

The feasibility, scientific objectives, modes of exploration and implementation alternatives of a rendezvous mission to Encke's comet in 1984 are considered. Principal emphasis is placed on developing the scientific rationale for such a mission, based on available knowledge and best estimates of this comet's physical characteristics, including current theories of its origin, evolution and composition. Studied are mission profile alternatives, performance tradeoffs, preferred exploration strategy, and a spacecraft design concept capable of performing this mission. The study showed that the major scientific objectives can be met by a Titan IIID/Centaur-launched 17.5 kw solar electric propulsion spacecraft which carries 60 kg of scientific instruments and is capable of extensive maneuvering within the comet envelope to explore the coma, tail and nucleus.

Targeted therapies in non-small cell lung carcinoma: what have we achieved so far?

PubMed Central

Houhou, Wissam

2013-01-01

The search for innovative therapeutic agents in non-small cell lung cancer (NSCLC) has witnessed a swift evolution. The number of targeted drugs that can improve patient outcomes with an acceptable safety profile is steadily increasing. In this review, we highlight current drugs that have already been approved or are under evaluation for the treatment of patients with NSCLC, either in monotherapy or combined therapy for both the first- and second-line settings. Experience with drugs targeting the vascular endothelial growth factor and its receptor, as well as the epidermal growth factor receptor is summarized. Moreover, we provide an overview of more novel targets in NSCLC and initial experience with the respective therapeutic agents. PMID:23858333

Rapid Evolution of the Gaseous Exoplanetary Debris around the White Dwarf Star HE 1349–2305

NASA Astrophysics Data System (ADS)

Dennihy, E.; Clemens, J. C.; Dunlap, B. H.; Fanale, S. M.; Fuchs, J. T.; Hermes, J. J.

2018-02-01

Observations of heavy metal pollution in white dwarf stars indicate that metal-rich planetesimals are frequently scattered into star-grazing orbits, tidally disrupted, and accreted onto the white dwarf surface, offering direct insight into the dynamical evolution of post-main-sequence exoplanetary systems. Emission lines from the gaseous debris in the accretion disks of some of these systems show variations on timescales of decades, and have been interpreted as the general relativistic precession of a recently formed, elliptical disk. Here we present a comprehensive spectroscopic monitoring campaign of the calcium infrared triplet emission in one system, HE 1349–2305, which shows morphological emission profile variations suggestive of a precessing, asymmetric intensity pattern. The emission profiles are shown to vary on a timescale of one to two years, which is an order of magnitude shorter than what has been observed in other similar systems. We demonstrate that this timescale is likely incompatible with general relativistic precession, and consider alternative explanations for the rapid evolution, including the propagation of density waves within the gaseous debris. We conclude with recommendations for follow-up observations, and discuss how the rapid evolution of the gaseous debris in HE 1349–2305 could be leveraged to test theories of exoplanetary debris disk evolution around white dwarf stars.

Inversions and inverted transpositions as the basis for an almost universal "format" of genome sequences.

PubMed

Albrecht-Buehler, Guenter

2007-09-01

In genome duplexes that exceed 100 kb the frequency distributions of their trinucleotides (triplet profiles) are the same in both strands. This remarkable symmetry, sometimes called Chargaff's second parity rule, is not the result of base pairing, but can be explained as the result of countless inversions and inverted transpositions that occurred throughout evolution (G. Albrecht-Buehler, 2006, Proc. Natl. Acad. Sci. USA 103, 17828-17833). Furthermore, comparing the triplet profiles of genomes from a large number of different taxa and species revealed that they were not only strand-symmetrical, but even surprisingly similar to one another (majority profile; G. Albrecht-Buehler, 2007, Genomics 89, 596-601). The present article proposes that the same inversion/transposition mechanism(s) that created the strand symmetry may also explain the existence of the majority profile. Thus they may be key factors in the creation of an almost universal "format" in which genome sequences are written. One may speculate that this universality of genome format may facilitate horizontal gene transfer and, thus, accelerate evolution.

Insights into the Diversity of Attitudes Concerning Evolution and Creation: A Multidimensional Approach

ERIC Educational Resources Information Center

Konneman, Christiane; Asshoff, Roman; Hammann, Marcus

2016-01-01

The main aim of this paper is to describe high school students' attitudes concerning evolution and creation, with a focus on (1) attitudes toward evolutionary theory, (2) attitudes toward the Biblical accounts of creation, (3) creationist beliefs, and (4) scientistic beliefs. Latent class analyses revealed seven attitude profiles in a sample of…

Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish

PubMed Central

2010-01-01

Background Systematic research on fish immunogenetics is indispensable in understanding the origin and evolution of immune systems. This has long been a challenging task because of the limited number of deep sequencing technologies and genome backgrounds of non-model fish available. The newly developed Solexa/Illumina RNA-seq and Digital gene expression (DGE) are high-throughput sequencing approaches and are powerful tools for genomic studies at the transcriptome level. This study reports the transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus using RNA-seq and DGE in an attempt to gain insights into the immunogenetics of marine fish. Results RNA-seq analysis generated 169,950 non-redundant consensus sequences, among which 48,987 functional transcripts with complete or various length encoding regions were identified. More than 52% of these transcripts are possibly involved in approximately 219 known metabolic or signalling pathways, while 2,673 transcripts were associated with immune-relevant genes. In addition, approximately 8% of the transcripts appeared to be fish-specific genes that have never been described before. DGE analysis revealed that the host transcriptome profile of Vibrio harveyi-challenged L. japonicus is considerably altered, as indicated by the significant up- or down-regulation of 1,224 strong infection-responsive transcripts. Results indicated an overall conservation of the components and transcriptome alterations underlying innate and adaptive immunity in fish and other vertebrate models. Analysis suggested the acquisition of numerous fish-specific immune system components during early vertebrate evolution. Conclusion This study provided a global survey of host defence gene activities against bacterial challenge in a non-model marine fish. Results can contribute to the in-depth study of candidate genes in marine fish immunity, and help improve current understanding of host-pathogen interactions and evolutionary history of immunogenetics from fish to mammals. PMID:20707909

Towards self-consistent plasma modelisation in presence of neoclassical tearing mode and sawteeth: effects on transport coefficients

NASA Astrophysics Data System (ADS)

Basiuk, V.; Huynh, P.; Merle, A.; Nowak, S.; Sauter, O.; Contributors, JET; the EUROfusion-IM Team

2017-12-01

The neoclassical tearing modes (NTM) increase the effective heat and particle radial transport inside the plasma, leading to a flattening of the electron and ion temperature and density profiles at a given location depending on the safety factor q rational surface (Hegna and Callen 1997 Phys. Plasmas 4 2940). In burning plasma such as in ITER, this NTM-induced increased transport could reduce significantly the fusion performance and even lead to a disruption. Validating models describing the NTM-induced transport in present experiment is thus important to help quantifying this effect on future devices. In this work, we apply an NTM model to an integrated simulation of current, heat and particle transport on JET discharges using the European transport simulator. In this model, the heat and particle radial transport coefficients are modified by a Gaussian function locally centered at the NTM position and characterized by a full width proportional to the island size through a constant parameter adapted to obtain the best simulations of experimental profiles. In the simulation, the NTM model is turned on at the same time as the mode is triggered in the experiment. The island evolution is itself determined by the modified Rutherford equation, using self-consistent plasma parameters determined by the transport evolution. The achieved simulation reproduces the experimental measurements within the error bars, before and during the NTM. A small discrepancy is observed on the radial location of the island due to a shift of the position of the computed q = 3/2 surface compared to the experimental one. To explain such small shift (up to about 12% with respect to the position observed from the experimental electron temperature profiles), sensitivity studies of the NTM location as a function of the initialization parameters are presented. First results validate both the transport model and the transport modification calculated by the NTM model.

Profiles of childhood adversities in pathological gamblers - A latent class analysis.

PubMed

Lotzin, Annett; Ulas, Mehmet; Buth, Sven; Milin, Sascha; Kalke, Jens; Schäfer, Ingo

2018-06-01

Despite of high rates of adverse childhood experiences (ACEs) in pathological gamblers, researchers have rarely studied which types of ACEs often co-occur and how these profiles of ACEs are related to current psychopathology. We aimed to identify profiles of ACEs in pathological gamblers and examined how these profiles were related to gambling-related characteristics and current general psychopathology. In 329 current or lifetime pathological gamblers, diagnosed with the Composite Diagnostic Interview for DSM-IV, 10 types of ACEs were measured using the Adverse Childhood Experiences Questionnaire. Global psychopathology was assessed using the Symptom Checklist SCL-27. ACE profiles were identified using latent class analysis. Differences between ACE profiles in gambling-related characteristics and global psychopathology were analyzed using MANOVA. We found that four out of five gamblers (n=257, 78.1%) reported at least one ACE. Four distinct ACE profiles were identified: 'Low ACE', 'High ACE', 'Physical and emotional abuse', and 'Neglect'. The number of the fulfilled pathological gambling criteria and the severity of current global psychopathology differed between the ACE profiles: Gamblers with a 'High ACE' profile fulfilled more pathological gambling criteria and showed a more severe current psychopathology than gamblers of the 'Low ACE' profile. Gamblers with a 'Physical and emotional abuse' or an 'Emotion neglect' profile showed an intermediate severity of psychopathology. Our findings indicate that four different ACE profiles can be distinguished in pathological gamblers that differed in their gambling-related characteristics and current psychopathology. Systematic assessment of profiles of ACEs in pathological gamblers may inform about the severity of current global psychopathology that might be important to be addressed in addition to gambling-specific treatment. Copyright © 2018 Elsevier Ltd. All rights reserved.

Multiscale gyrokinetics for rotating tokamak plasmas: fluctuations, transport and energy flows.

PubMed

Abel, I G; Plunk, G G; Wang, E; Barnes, M; Cowley, S C; Dorland, W; Schekochihin, A A

2013-11-01

This paper presents a complete theoretical framework for studying turbulence and transport in rapidly rotating tokamak plasmas. The fundamental scale separations present in plasma turbulence are codified as an asymptotic expansion in the ratio ε = ρi/α of the gyroradius to the equilibrium scale length. Proceeding order by order in this expansion, a set of coupled multiscale equations is developed. They describe an instantaneous equilibrium, the fluctuations driven by gradients in the equilibrium quantities, and the transport-timescale evolution of mean profiles of these quantities driven by the interplay between the equilibrium and the fluctuations. The equilibrium distribution functions are local Maxwellians with each flux surface rotating toroidally as a rigid body. The magnetic equilibrium is obtained from the generalized Grad-Shafranov equation for a rotating plasma, determining the magnetic flux function from the mean pressure and velocity profiles of the plasma. The slow (resistive-timescale) evolution of the magnetic field is given by an evolution equation for the safety factor q. Large-scale deviations of the distribution function from a Maxwellian are given by neoclassical theory. The fluctuations are determined by the 'high-flow' gyrokinetic equation, from which we derive the governing principle for gyrokinetic turbulence in tokamaks: the conservation and local (in space) cascade of the free energy of the fluctuations (i.e. there is no turbulence spreading). Transport equations for the evolution of the mean density, temperature and flow velocity profiles are derived. These transport equations show how the neoclassical and fluctuating corrections to the equilibrium Maxwellian act back upon the mean profiles through fluxes and heating. The energy and entropy conservation laws for the mean profiles are derived from the transport equations. Total energy, thermal, kinetic and magnetic, is conserved and there is no net turbulent heating. Entropy is produced by the action of fluxes flattening gradients, Ohmic heating and the equilibration of interspecies temperature differences. This equilibration is found to include both turbulent and collisional contributions. Finally, this framework is condensed, in the low-Mach-number limit, to a more concise set of equations suitable for numerical implementation.

Influence of switches and crossings on wheel profile evolution in freight vehicles

NASA Astrophysics Data System (ADS)

Casanueva, Carlos; Doulgerakis, Emmanouil; Jönsson, Per-Anders; Stichel, Sebastian

2014-05-01

Wheel reprofiling costs for freight vehicles are a major issue in Sweden, reducing the profitability of freight traffic operations and therefore hindering the modal shift needed for achieving reduced emissions. In order to understand the damage modes in freight vehicles, uniform wear prediction with Archard's wear law has been studied in a two-axle timber transport wagon, and simulation results have been compared to measurements. Challenges of wheel wear prediction in freight wagons are discussed, including the influence of block brakes and switches and crossings. The latter have a major influence on the profile evolution of this case study, so specific simulations are performed and a thorough discussion is carried out.

Profiling of the injected charge drift current transients by cross-sectional scanning technique

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gaubas, E., E-mail: eugenijus.gaubas@ff.vu.lt; Ceponis, T.; Pavlov, J.

2014-02-07

The electric field distribution and charge drift currents in Si particle detectors are analyzed. Profiling of the injected charge drift current transients has been implemented by varying charge injection position within a cross-sectional boundary of the particle detector. The obtained profiles of the induction current density and duration of the injected charge drift pulses fit well the simulated current variations. Induction current transients have been interpreted by different stages of the bipolar and monopolar drift of the injected carriers. Profiles of the injected charge current transients registered in the non-irradiated and neutron irradiated Si diodes are compared. It has beenmore » shown that the mixed regime of the competing processes of drift, recombination, and diffusion appears in the measured current profiles on the irradiated samples. The impact of the avalanche effects can be ignored based on the investigations presented. It has been shown that even a simplified dynamic model enabled us to reproduce the main features of the profiled transients of induced charge drift current.« less

Model study of modern oil-based paint media by triacylglycerol profiling in positive and negative ionization modes.

PubMed

Degano, Ilaria; La Nasa, Jacopo; Ghelardi, Elisa; Modugno, Francesca; Colombini, Maria Perla

2016-12-01

Lipid binders have traditionally been determined in paintings by using gas chromatography/mass spectrometry (GC/MS) to identify the characteristic profiles and ratios of fatty acids . However, the presence of mixtures in contemporary and modern oil paints makes the GC/MS determination of fatty acids insufficient to fully characterize the lipid binding media. In this study we prove that triacylglycerol (TAG) profiling by high-performance liquid chromatography with high-resolution tandem mass spectrometry, using ESI in positive and negative ionization modes is highly effective. We exploited this analytical approach to study the curing and degradation processes undergone by six plant oils used in the formulation of media in modern paints, using both natural and artificial ageing experiments. We believe that is the first time that a negative ionization mode has been applied for this purpose and that a survey with HPLC-ESI-Q-ToF has been carried out to study the ageing kinetics of plant oils. TAG profiling enabled us to study the evolution over time of the constituents of modern oils, with respect to curing and ageing. The data analyzed in this study demonstrate that our approach is efficient to study the oxidation of TAGs during ageing. The data also improve current knowledge on the properties of vegetable oils, which could lead to the development of new paint materials and conservation treatments for modern and contemporary works of art. Copyright © 2016 Elsevier B.V. All rights reserved.

Demonstrating the Physics Basis for the ITER 15 MA Inductive Discharge on Alcator C-Mod

NASA Astrophysics Data System (ADS)

Kessel, C. E.; Wolfe, S. M.; Hutchinson, I. H.; Hughes, J. W.; Lin, Y.; Ma, Y.; Mikkelsen, D. R.; Poli, F.; Reinke, M. L.; Wukitch, S. J.

2012-10-01

Rampup discharges in C-Mod, matching ITE's current diffusion times show ICRF heating can save V-s but results in only weak effects on the current profile, despite strong modifications of the central electron temperature. Simulation of these discharges with TSC, and TORIC for ICRF, using multiple transport models, do not reproduce the temperature profile evolution, or the experimental internal self-inductance li, by sufficiently large amounts to be unacceptable for projections to ITER operation. For the flattop phase experiments EDA H-modes approach the ITER parameter targets of q95=3, H98=1, n/nGr=0.85, betaN=1.7, and k=1.8, and sustain them similar to a normalized ITER flattop time. The discharges show a degradation of energy confinement at higher densities, but increasing H98 with increasing net power to the plasma. For these discharges intrinsic impurities (B, Mo) provided radiated power fractions of 25-37%. Experiments show the plasma can remain in H-mode in rampdown with ICRF injection, the density will decrease with Ip while in the H-mode, and the back transition occurs when the net power reaches about half the L-H transition power. C-Mod indicates that faster rampdowns are preferable. Work supported by US Dept of Energy under DE-AC02-CH0911466 and DE-FC02-99ER54512.

Origin and evolution of planetary atmospheres

NASA Technical Reports Server (NTRS)

Pollack, J. B.; Yung, Y. L.

1980-01-01

The current understanding of the origin and evolution of the atmospheres of solar system objects is reviewed. Physical processes that control this evolution are described in an attempt to develop a set of general principles that can help guide studies of specific objects. Particular emphasis is placed on the planetary and satellite atmospheres of the inner solar system objects; current hypotheses on the origin and evolution of these objects are critically considered.

SinoProbe - A Multidisciplinary Research Program of Earth Sciences in China (Invited)

NASA Astrophysics Data System (ADS)

Dong, S.; Li, T.

2010-12-01

China occupies a large region of central and eastern Asia and holds keys to resolving several first-order problems in Earth Sciences. Besides the importance in Earth Science research, the rapid growth of Chinese economy also demands a comprehensive and systematic evaluation of its natural resources and the impacts of geohazards on its societal development. In order to address the above issues, the Chinese government had initiated a new multidisciplinary research project in Earth Sciences - the SinoProbe Program. Its fundamental goal is to determine the three-dimensional structure, composition distribution, and geological evolution of the Chinese continental lithosphere. The results of the SinoProbe Program are expected to have broad impacts on the Chinese society and economy. In particular, the program will greatly enhance our current understanding on (1) the forming and distribution of mineral resources in the nation, (2) the locations and recurrence histories of major active fault zones capable of generating large earthquakes in highly populated regions, and (3) the distribution of major hazard-prone regions induced by geological processes. In 2009, more than 720 investigators and 70 engineers from Chinese institutions are currently involved with the research program. Sinoprobe hope that the joint forces by Chinese and international researchers will bring in modern approaches, new analytical tools, and advanced exploration technology into the successful operation of the program. In past year, 1,960km long seismic reflection profiling with broadband seismological studies and MT surveys separated from 6 profiles in China continent have completed. MT array coved the North China craton by 1°×1° network and 3-D exploration in larger ore deposits in selected area were carried out. A scientific drilling area operated in Tibet. We started to establish a geochemical reference framework for the values of 76 elements in a grid network with data-point spacing of 160 km in China. Some stress monitoring were centered in the Beijing and the southeastern margin of the Qinghai-Tibet Plateau regions. Also, SinoProbe begin to establish a high-performance calculation platform that will consider coupling processes between deformation and thermal evolution in the lithosphere. Meanwhile, data integration and data dissemination is going to stored. Finally, SinoProbe will also devote to develop new technologies, innovative methods, data integration platforms, and modern equipments for deep Earth and mineral-deposit explorations. In summary, SinoProbe is a multi-year and multidisciplinary research program to be carried in China with 9 projects and 49 sub-projects. It will integrate geological, geophysical, geochemical, and modern exploration technology to examine the deep Earth structures and their evolution in China. The results will undoubtedly contribute to the improvement of our current understanding of the Eurasia continent in particular and the Earth in general.

Adaptive dynamics of cuticular hydrocarbons in Drosophila

PubMed Central

Rajpurohit, Subhash; Hanus, Robert; Vrkoslav, Vladimír; Behrman, Emily L.; Bergland, Alan O.; Petrov, Dmitri; Cvačka, Josef; Schmidt, Paul S.

2016-01-01

Cuticular hydrocarbons (CHCs) are hydrophobic compounds deposited on the arthropod cuticle that are of functional significance with respect to stress tolerance, social interactions, and mating dynamics. We characterized CHC profiles in natural populations of Drosophila melanogaster at five levels: across a latitudinal transect in the eastern U.S., as a function of developmental temperature during culture, across seasonal time in replicate years, and as a function of rapid evolution in experimental mesocosms in the field. Furthermore, we also characterized spatial and temporal change in allele frequencies for SNPs in genes that are associated with the production and chemical profile of CHCs. Our data demonstrate a striking degree of parallelism for clinal and seasonal variation in CHCs in this taxon; CHC profiles also demonstrate significant plasticity in response to rearing temperature, and the observed patterns of plasticity parallel the spatiotemporal patterns observed in nature. We find that these congruent shifts in CHC profiles across time and space are also mirrored by predictable shifts in allele frequencies at SNPs associated with CHC chain length. Finally, we observed rapid and predictable evolution of CHC profiles in experimental mesocosms in the field. Together, these data strongly suggest that CHC profiles respond rapidly and adaptively to environmental parameters that covary with latitude and season, and that this response reflects the process of local adaptation in natural populations of D. melanogaster. PMID:27718537

Quasi-linear modeling of lower hybrid current drive in ITER and DEMO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cardinali, A., E-mail: alessandro.cardinali@enea.it; Cesario, R.; Panaccione, L.

2015-12-10

First pass absorption of the Lower Hybrid waves in thermonuclear devices like ITER and DEMO is modeled by coupling the ray tracing equations with the quasi-linear evolution of the electron distribution function in 2D velocity space. As usually assumed, the Lower Hybrid Current Drive is not effective in a plasma of a tokamak fusion reactor, owing to the accessibility condition which, depending on the density, restricts the parallel wavenumber to values greater than n{sub ∥crit} and, at the same time, to the high electron temperature that would enhance the wave absorption and then restricts the RF power deposition to themore » very periphery of the plasma column (near the separatrix). In this work, by extensively using the “ray{sup star}” code, a parametric study of the propagation and absorption of the LH wave as function of the coupled wave spectrum (as its width, and peak value), has been performed very accurately. Such a careful investigation aims at controlling the power deposition layer possibly in the external half radius of the plasma, thus providing a valuable aid to the solution of how to control the plasma current profile in a toroidal magnetic configuration, and how to help the suppression of MHD mode that can develop in the outer part of the plasma. This analysis is useful not only for exploring the possibility of profile control of a pulsed operation reactor as well as the tearing mode stabilization, but also in order to reconsider the feasibility of steady state regime for DEMO.« less

The topography of a continental indenter: The interplay between crustal deformation, erosion, and base level changes in the eastern Southern Alps

PubMed Central

Heberer, B.; Prasicek, G.; Neubauer, F.; Hergarten, S.

2017-01-01

Abstract The topography of the eastern Southern Alps (ESA) reflects indenter tectonics causing crustal shortening, surface uplift, and erosional response. Fluvial drainages were perturbed by Pleistocene glaciations that locally excavated alpine valleys. The Late Miocene desiccation of the Mediterranean Sea and the uplift of the northern Molasse Basin led to significant base level changes in the far field of the ESA and the Eastern Alps (EA), respectively. Among this multitude of mechanisms, the processes that dominate the current topographic evolution of the ESA and the ESA‐EA drainage divide have not been identified. We demonstrate the expected topographic effects of each mechanism in a one‐dimensional model and compare them with observed channel metrics. We find that the normalized steepness index increases with uplift rate and declines from the indenter tip in the northwest to the foreland basin in the southeast. The number and amplitude of knickpoints and the distortion in longitudinal channel profiles similarly decrease toward the east. Changes in slope of χ‐transformed channel profiles coincide spatially with the Valsugana‐Fella fault linking crustal stacking and uplift induced by indenter tectonics with topographic evolution. Gradients in χ across the ESA‐EA drainage divide imply an ongoing, north directed shift of the Danube‐ESA watershed that is most likely driven by a base level rise in the northern Molasse basin. We conclude that the regional uplift pattern controls the geometry of ESA‐EA channels, while base level changes in the far field control the overall architecture of the orogen by drainage divide migration. PMID:28344912

Comparison of statistical sampling methods with ScannerBit, the GAMBIT scanning module

NASA Astrophysics Data System (ADS)

Martinez, Gregory D.; McKay, James; Farmer, Ben; Scott, Pat; Roebber, Elinore; Putze, Antje; Conrad, Jan

2017-11-01

We introduce ScannerBit, the statistics and sampling module of the public, open-source global fitting framework GAMBIT. ScannerBit provides a standardised interface to different sampling algorithms, enabling the use and comparison of multiple computational methods for inferring profile likelihoods, Bayesian posteriors, and other statistical quantities. The current version offers random, grid, raster, nested sampling, differential evolution, Markov Chain Monte Carlo (MCMC) and ensemble Monte Carlo samplers. We also announce the release of a new standalone differential evolution sampler, Diver, and describe its design, usage and interface to ScannerBit. We subject Diver and three other samplers (the nested sampler MultiNest, the MCMC GreAT, and the native ScannerBit implementation of the ensemble Monte Carlo algorithm T-Walk) to a battery of statistical tests. For this we use a realistic physical likelihood function, based on the scalar singlet model of dark matter. We examine the performance of each sampler as a function of its adjustable settings, and the dimensionality of the sampling problem. We evaluate performance on four metrics: optimality of the best fit found, completeness in exploring the best-fit region, number of likelihood evaluations, and total runtime. For Bayesian posterior estimation at high resolution, T-Walk provides the most accurate and timely mapping of the full parameter space. For profile likelihood analysis in less than about ten dimensions, we find that Diver and MultiNest score similarly in terms of best fit and speed, outperforming GreAT and T-Walk; in ten or more dimensions, Diver substantially outperforms the other three samplers on all metrics.

The topography of a continental indenter: The interplay between crustal deformation, erosion, and base level changes in the eastern Southern Alps.

PubMed

Robl, J; Heberer, B; Prasicek, G; Neubauer, F; Hergarten, S

2017-01-01

The topography of the eastern Southern Alps (ESA) reflects indenter tectonics causing crustal shortening, surface uplift, and erosional response. Fluvial drainages were perturbed by Pleistocene glaciations that locally excavated alpine valleys. The Late Miocene desiccation of the Mediterranean Sea and the uplift of the northern Molasse Basin led to significant base level changes in the far field of the ESA and the Eastern Alps (EA), respectively. Among this multitude of mechanisms, the processes that dominate the current topographic evolution of the ESA and the ESA-EA drainage divide have not been identified. We demonstrate the expected topographic effects of each mechanism in a one-dimensional model and compare them with observed channel metrics. We find that the normalized steepness index increases with uplift rate and declines from the indenter tip in the northwest to the foreland basin in the southeast. The number and amplitude of knickpoints and the distortion in longitudinal channel profiles similarly decrease toward the east. Changes in slope of χ -transformed channel profiles coincide spatially with the Valsugana-Fella fault linking crustal stacking and uplift induced by indenter tectonics with topographic evolution. Gradients in χ across the ESA-EA drainage divide imply an ongoing, north directed shift of the Danube-ESA watershed that is most likely driven by a base level rise in the northern Molasse basin. We conclude that the regional uplift pattern controls the geometry of ESA-EA channels, while base level changes in the far field control the overall architecture of the orogen by drainage divide migration.

Validation of neoclassical bootstrap current models in the edge of an H-mode plasma.

PubMed

Wade, M R; Murakami, M; Politzer, P A

2004-06-11

Analysis of the parallel electric field E(parallel) evolution following an L-H transition in the DIII-D tokamak indicates the generation of a large negative pulse near the edge which propagates inward, indicative of the generation of a noninductive edge current. Modeling indicates that the observed E(parallel) evolution is consistent with a narrow current density peak generated in the plasma edge. Very good quantitative agreement is found between the measured E(parallel) evolution and that expected from neoclassical theory predictions of the bootstrap current.

THE EVOLUTION OF THE ELECTRIC CURRENT DURING THE FORMATION AND ERUPTION OF ACTIVE-REGION FILAMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Jincheng; Yan, Xiaoli; Qu, Zhongquan

We present a comprehensive study of the electric current related to the formation and eruption of active region filaments in NOAA AR 11884. The vertical current on the solar surface was investigated by using vector magnetograms (VMs) observed by HMI on board the Solar Dynamics Observatory. To obtain the electric current along the filament's axis, we reconstructed the magnetic fields above the photosphere by using nonlinear force-free field extrapolation based on photospheric VMs. Spatio-temporal evolutions of the vertical current on the photospheric surface and the horizontal current along the filament's axis were studied during the long-term evolution and eruption-related period,more » respectively. The results show that the vertical currents of the entire active region behaved with a decreasing trend and the magnetic fields also kept decreasing during the long-term evolution. For the eruption-related evolution, the mean transverse field strengths decreased before two eruptions and increased sharply after two eruptions in the vicinity of the polarity inversion lines underneath the filament. The related vertical current showed different behaviors in two of the eruptions. On the other hand, a very interesting feature was found: opposite horizontal currents with respect to the current of the filament's axis appeared and increased under the filament before the eruptions and disappeared after the eruptions. We suggest that these opposite currents were carried by the new flux emerging from the photosphere bottom and might be the trigger mechanism for these filament eruptions.« less

Quaternary sedimentary processes on the northwestern African continental margin - An integrated study using side-scan sonar, high-resolution profiling, and core data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Masson, D.G.; Huggett, Q.J.; Weaver, P.P.E.

1991-08-01

Side-scan sonar data, cores, and high-resolution profiles have been used to produce an integrated model of sedimentation for the continental margin west of the Canary Islands. Long-range side-scan sonar (GLORIA) data and a grid of 3.5-kHz profiles, covering some 200,000 km{sup 2} allow a regional appraisal of sedimentation. More detailed studies of selected areas have been undertaken using a new 30 kHz deep-towed side-scan sonar (TOBI) developed by the U.K. Institute of Oceanographic Sciences. Sediment cores have been used both to calibrate acoustic facies identified on sonographs and for detailed stratigraphic studies. The most recent significant sedimentation event in themore » area is to Saharan Sediment Slide, which carried material from the upper continental slope off West Africa to the edge of the Madeira Abyssal Plain, a distance of some 1000 km. The authors data shows the downslope evolution of the debris flow. Near the Canaries, it is a 20-m-thick deposit rafting coherent blocks of more than 1 km diameter; side-scan records show a strong flow-parallel fabric on a scale of tens of meters. On the lower slope, the debris flow thins to a few meters, the flow fabric disappears, and the rafted blocks decrease to meters in diameter. Side-scan data from the lower slope show that the Saharan Slide buries an older landscape of turbidity current channels, typically 1 km wide and 50 m deep. Evidence from the Madeiran Abyssal Plain indicates a history of large but infrequent turbidity currents, the emplacement of which is related to the effects of sea level changes on the northwest African margin.« less

Dodecahedral W@WC Composite as Efficient Catalyst for Hydrogen Evolution and Nitrobenzene Reduction Reactions.

PubMed

Chen, Zhao-Yang; Duan, Long-Fa; Sheng, Tian; Lin, Xiao; Chen, Ya-Feng; Chu, You-Qun; Sun, Shi-Gang; Lin, Wen-Feng

2017-06-21

Core-shell composites with strong phase-phase contact could provide an incentive for catalytic activity. A simple, yet efficient, H 2 O-mediated method has been developed to synthesize a mesoscopic core-shell W@WC architecture with a dodecahedral microstructure, via a one-pot reaction. The H 2 O plays an important role in the resistance of carbon diffusion, resulting in the formation of the W core and W-terminated WC shell. Density functional theory (DFT) calculations reveal that adding W as core reduced the oxygen adsorption energy and provided the W-terminated WC surface. The W@WC exhibits significant electrocatalytic activities toward hydrogen evolution and nitrobenzene electroreduction reactions, which are comparable to those found for commercial Pt/C, and substantially higher than those found for meso- and nano-WC materials. The experimental results were explained by DFT calculations based on the energy profiles in the hydrogen evolution reactions over WC, W@WC, and Pt model surfaces. The W@WC also shows a high thermal stability and thus may serve as a promising more economical alternative to Pt catalysts in these important energy conversion and environmental protection applications. The current approach can also be extended or adapted to various metals and carbides, allowing for the design and fabrication of a wide range of catalytic and other multifunctional composites.

Role of maternal thyroid hormones in the developing neocortex and during human evolution

PubMed Central

Stenzel, Denise; Huttner, Wieland B.

2013-01-01

The importance of thyroid hormones during brain development has been appreciated for many decades. In humans, low levels of circulating maternal thyroid hormones, e.g., caused by maternal hypothyroidism or lack of iodine in diet, results in a wide spectrum of severe neurological defects, including neurological cretinism characterized by profound neurologic impairment and mental retardation, underlining the importance of the maternal thyroid hormone contribution. In fact, iodine intake, which is essential for thyroid hormone production in the thyroid gland, has been related to the expansion of the brain, associated with the increased cognitive capacities during human evolution. Because thyroid hormones regulate transcriptional activity of target genes via their nuclear thyroid hormone receptors (THRs), even mild and transient changes in maternal thyroid hormone levels can directly affect and alter the gene expression profile, and thus disturb fetal brain development. Here we summarize how thyroid hormones may have influenced human brain evolution through the adaptation to new habitats, concomitant with changes in diet and, therefore, iodine intake. Further, we review the current picture we gained from experimental studies in rodents on the function of maternal thyroid hormones during developmental neurogenesis. We aim to evaluate the effects of maternal thyroid hormone deficiency as well as lack of THRs and transporters on brain development and function, shedding light on the cellular behavior conducted by thyroid hormones. PMID:23882187

Mapping arealisation of the visual cortex of non-primate species: lessons for development and evolution

PubMed Central

Homman-Ludiye, Jihane; Bourne, James A.

2014-01-01

The integration of the visual stimulus takes place at the level of the neocortex, organized in anatomically distinct and functionally unique areas. Primates, including humans, are heavily dependent on vision, with approximately 50% of their neocortical surface dedicated to visual processing and possess many more visual areas than any other mammal, making them the model of choice to study visual cortical arealisation. However, in order to identify the mechanisms responsible for patterning the developing neocortex, specifying area identity as well as elucidate events that have enabled the evolution of the complex primate visual cortex, it is essential to gain access to the cortical maps of alternative species. To this end, species including the mouse have driven the identification of cellular markers, which possess an area-specific expression profile, the development of new tools to label connections and technological advance in imaging techniques enabling monitoring of cortical activity in a behaving animal. In this review we present non-primate species that have contributed to elucidating the evolution and development of the visual cortex. We describe the current understanding of the mechanisms supporting the establishment of areal borders during development, mainly gained in the mouse thanks to the availability of genetically modified lines but also the limitations of the mouse model and the need for alternate species. PMID:25071460

Tumor progression: chance and necessity in Darwinian and Lamarckian somatic (mutationless) evolution.

PubMed

Huang, Sui

2012-09-01

Current investigation of cancer progression towards increasing malignancy focuses on the molecular pathways that produce the various cancerous traits of cells. Their acquisition is explained by the somatic mutation theory: tumor progression is the result of a neo-Darwinian evolution in the tissue. Herein cells are the units of selection. Random genetic mutations permanently affecting these pathways create malignant cell phenotypes that are selected for in the disturbed tissue. However, could it be that the capacity of the genome and its gene regulatory network to generate the vast diversity of cell types during development, i.e., to produce inheritable phenotypic changes without mutations, is harnessed by tumorigenesis to propel a directional change towards malignancy? Here we take an encompassing perspective, transcending the orthodoxy of molecular carcinogenesis and review mechanisms of somatic evolution beyond the Neo-Darwinian scheme. We discuss the central concept of "cancer attractors" - the hidden stable states of gene regulatory networks normally not occupied by cells. Noise-induced transitions into such attractors provide a source for randomness (chance) and regulatory constraints (necessity) in the acquisition of novel expression profiles that can be inherited across cell divisions, and hence, can be selected for. But attractors can also be reached in response to environmental signals - thus offering the possibility for inheriting acquired traits that can also be selected for. Therefore, we face the possibility of non-genetic (mutation-independent) equivalents to both Darwinian and Lamarckian evolution which may jointly explain the arrow of change pointing toward increasing malignancy. Copyright © 2012 Elsevier Ltd. All rights reserved.

Assessing grain-size correspondence between flow and deposits of controlled floods in the Colorado River, USA

USGS Publications Warehouse

Draut, Amy; Rubin, David M.

2013-01-01

Flood-deposited sediment has been used to decipher environmental parameters such as variability in watershed sediment supply, paleoflood hydrology, and channel morphology. It is not well known, however, how accurately the deposits reflect sedimentary processes within the flow, and hence what sampling intensity is needed to decipher records of recent or long-past conditions. We examine these problems using deposits from dam-regulated floods in the Colorado River corridor through Marble Canyon–Grand Canyon, Arizona, U.S.A., in which steady-peaked floods represent a simple end-member case. For these simple floods, most deposits show inverse grading that reflects coarsening suspended sediment (a result of fine-sediment-supply limitation), but there is enough eddy-scale variability that some profiles show normal grading that did not reflect grain-size evolution in the flow as a whole. To infer systemwide grain-size evolution in modern or ancient depositional systems requires sampling enough deposit profiles that the standard error of the mean of grain-size-change measurements becomes small relative to the magnitude of observed changes. For simple, steady-peaked floods, 5–10 profiles or fewer may suffice to characterize grain-size trends robustly, but many more samples may be needed from deposits with greater variability in their grain-size evolution.

Chirp subbottom profile data collected in 2015 from the northern Chandeleur Islands, Louisiana

USGS Publications Warehouse

Forde, Arnell S.; DeWitt, Nancy T.; Fredericks, Jake J.; Miselis, Jennifer L.

2018-01-30

As part of the Barrier Island Evolution Research project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted a nearshore geophysical survey around the northern Chandeleur Islands, Louisiana, in September 2015. The objective of the project is to improve the understanding of barrier island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual time scales (1–5 years). Collecting geophysical data can help researchers identify relations between the geologic history of the islands and their present day morphology and sediment distribution. High-resolution geophysical data collected along this rapidly changing barrier island system can provide a unique time-series dataset to further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over medium-term time scales (months to years). Subbottom profile data were collected in September 2015 offshore of the northern Chandeleur Islands, during USGS Field Activity Number 2015-331-FA. Data products, including raw digital chirp subbottom data, processed subbottom profile images, survey trackline map, navigation files, geographic information system data files and formal Federal Geographic Data Committee metadata, and Field Activity Collection System and operation logs are available for download.

Trends in stratospheric ozone profiles using functional mixed models

NASA Astrophysics Data System (ADS)

Park, A.; Guillas, S.; Petropavlovskikh, I.

2013-11-01

This paper is devoted to the modeling of altitude-dependent patterns of ozone variations over time. Umkehr ozone profiles (quarter of Umkehr layer) from 1978 to 2011 are investigated at two locations: Boulder (USA) and Arosa (Switzerland). The study consists of two statistical stages. First we approximate ozone profiles employing an appropriate basis. To capture primary modes of ozone variations without losing essential information, a functional principal component analysis is performed. It penalizes roughness of the function and smooths excessive variations in the shape of the ozone profiles. As a result, data-driven basis functions (empirical basis functions) are obtained. The coefficients (principal component scores) corresponding to the empirical basis functions represent dominant temporal evolution in the shape of ozone profiles. We use those time series coefficients in the second statistical step to reveal the important sources of the patterns and variations in the profiles. We estimate the effects of covariates - month, year (trend), quasi-biennial oscillation, the solar cycle, the Arctic oscillation, the El Niño/Southern Oscillation cycle and the Eliassen-Palm flux - on the principal component scores of ozone profiles using additive mixed effects models. The effects are represented as smooth functions and the smooth functions are estimated by penalized regression splines. We also impose a heteroscedastic error structure that reflects the observed seasonality in the errors. The more complex error structure enables us to provide more accurate estimates of influences and trends, together with enhanced uncertainty quantification. Also, we are able to capture fine variations in the time evolution of the profiles, such as the semi-annual oscillation. We conclude by showing the trends by altitude over Boulder and Arosa, as well as for total column ozone. There are great variations in the trends across altitudes, which highlights the benefits of modeling ozone profiles.

Observations of the Nocturnal Boundary Layer and Morning Transitional Periods in Houston, Texas during the TexAQS II Campaign

NASA Astrophysics Data System (ADS)

Day, B. M.; Clements, C. B.; Rappenglueck, B.

2007-12-01

High-temporal resolution tethersonde profiles taken during the TexAQS II field campaign in Houston were used to study the overnight development and progression of the nocturnal boundary layer (NBL) and the evolution of the convective boundary layer after sunrise. The measurements were made at the University of Houston campus, located approximately 4 km southeast of the downtown Houston central business district, and consisted of vertical profiles of potential temperature, water vapor mixing ratio, wind speed, wind direction, and ozone concentration. Profile heights averaged 250 m AGL with a few reaching 400 m AGL. Profiles were taken at approximately 30 min intervals throughout 4 nights during Intensive Observational Periods (IOPs), including both the evening and morning transitional periods. Tethersonde experiments also were performed during several additional morning break-up periods during the campaign. Preliminary results from the overnight experiments of Sept 7-8 and Sept 14-15, 2006 showed different NBL evolutions. Sept 7-8 exhibited a stronger and deeper inversion compared with Sept 14-15 when the inversion was weak with a fairly constant height throughout the night. The Sept 7-8 profiles showed elevated bluff-like structures in the virtual potential temperature profiles between 0300-0400 CDT, indicating neutral stability within the 40-90 m AGL level. And, just before sunrise a neutral layer with constant potential temperature developed between the surface and 75 m AGL reflecting horizontal cold air advection. Further analyses will be presented for other vertical profiles taken during the campaign, including the additional overnight profiles as well as the profiles taken during the morning transition to the convective boundary layer.

Taxonomic changes and description of two new species for the Phyllodactylus lanei complex (Gekkota: Phyllodactylidae) in Mexico.

PubMed

RamÍrez-Reyes, Tonatiuh; Flores-Villela, Oscar

2018-04-10

An integrative taxonomy approach was implemented based on analysis of genetic, phylogenetic, morphological and ecological data to identify the cryptic diversity within the Phyllodactylus lanei complex. At least six species can be identified, of which four are currently considered subspecies: Phyllodactylus lanei, Phyllodactylus rupinus, Phyllodactylus isabelae, Phyllodactylus lupitae and two corresponding to undescribed taxa, which are identified and described in this contribution. These differ from other Mexican geckos in several characters: genetic distance (DNAmt), position in molecular phylogeny (concatened data DNAmt+DNAnu), species tree, morphological characters such as snout-vent length, longitudinal scales, tubercles from head to tail, interorbital scales, scales across venter, third labial-snout scales and rows of tubercles across dorsum; there are also differences in their bioclimatic profiles (temperature and precipitation) and geographical distribution. The most recent studies on taxonomy and evolution of Mexican geckos (Phyllodactylus) show that the diversity of this group of reptiles is currently underestimated, suggesting that more research and conservation efforts are should be addressed at these lizards.

HSX as an example of a resilient non-resonant divertor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bader, A.; Boozer, A. H.; Hegna, C. C.

This study describes an initial description of the resilient divertor properties of quasi-symmetric (QS) stellarators using the HSX (Helically Symmetric eXperiment) configuration as a test-case. Divertors in high-performance QS stellarators will need to be resilient to changes in plasma configuration that arise due to evolution of plasma pressure profiles and bootstrap currents for divertor design. Resiliency is tested by examining the changes in strike point patterns from the field line following, which arise due to configurational changes. A low strike point variation with high configuration changes corresponds to high resiliency. The HSX edge displays resilient properties with configuration changes arisingmore » from the (1) wall position, (2) plasma current, and (3) external coils. The resilient behavior is lost if large edge islands intersect the wall structure. The resilient edge properties are corroborated by heat flux calculations from the fully 3-D plasma simulations using EMC3-EIRENE. Additionally, the strike point patterns are found to correspond to high curvature regions of magnetic flux surfaces.« less

Comparison of different tracers for PIV measurements in EHD airflow

NASA Astrophysics Data System (ADS)

Hamdi, M.; Havet, M.; Rouaud, O.; Tarlet, D.

2014-04-01

In this study, a proposed method for selecting a tracer for particle imaging velocimetry (PIV) measurement in electrohydrodynamics flows was developed. To begin with, several published studies were identified that exploit different tracers, such as oil smoke, cigarette smoke and titanium dioxide (TiO2). An assortment of tracers was then selected based on comparisons with conventional dimensionless numbers; Stokes number ( St), Archimedes number ( Ar) and electrical mobility ratio ( M). Subsequently, an experimental study for testing tracers was developed, which enabled the velocity profile of an ionic wind generated by a needle/ring configuration to be measured. Air velocity measurements carried out with a Pitot tube, considered as the reference measurements, were compared to PIV measurements for each tracer. In addition, the current-voltage curves and the evolution of the current during seeding were measured. All the experimental results show that TiO2, SiO2 microballoons and incense smoke are the ideal tracers in the series of tracers investigated.

HSX as an example of a resilient non-resonant divertor

DOE PAGES

Bader, A.; Boozer, A. H.; Hegna, C. C.; ...

2017-03-16

This study describes an initial description of the resilient divertor properties of quasi-symmetric (QS) stellarators using the HSX (Helically Symmetric eXperiment) configuration as a test-case. Divertors in high-performance QS stellarators will need to be resilient to changes in plasma configuration that arise due to evolution of plasma pressure profiles and bootstrap currents for divertor design. Resiliency is tested by examining the changes in strike point patterns from the field line following, which arise due to configurational changes. A low strike point variation with high configuration changes corresponds to high resiliency. The HSX edge displays resilient properties with configuration changes arisingmore » from the (1) wall position, (2) plasma current, and (3) external coils. The resilient behavior is lost if large edge islands intersect the wall structure. The resilient edge properties are corroborated by heat flux calculations from the fully 3-D plasma simulations using EMC3-EIRENE. Additionally, the strike point patterns are found to correspond to high curvature regions of magnetic flux surfaces.« less

RF current profile control studies in the alcator C-mod tokamak

NASA Astrophysics Data System (ADS)

Bonoli, P. T.; Porkolab, M.; Wukitch, S. J.; Bernabei, S.; Kaita, R.; Mikkelsen, D.; Phillips, C. K.; Schilling, G.

1999-09-01

Time dependent calculations of lower hybrid (LH) current profile control in Alcator C-Mod have been done using the TRANSP [1], FPPRF [2], and LSC [3] codes. Up to 3 MW of LH current drive power was applied in plasmas with high power ICRF minority heating (PICH=1.8-3 MW) and fast current ramp up. Using the experimentally measured temperature profiles, off-axis current generation resulted in nonmonotonic q-profiles with qmin~=1.6. Self-consistent effects of off-axis electron heating by the LH power were also included in the analysis and significant broadening of the electron temperature profile was found with qmin>~2 and a larger shear reversal radius.

Evolution of continental-scale drainage in response to mantle dynamics and surface processes: An example from the Ethiopian Highlands

NASA Astrophysics Data System (ADS)

Sembroni, Andrea; Molin, Paola; Pazzaglia, Frank J.; Faccenna, Claudio; Abebe, Bekele

2016-05-01

Ethiopia offers an excellent opportunity to study the effects and linkage between mantle dynamics and surface processes on landscape evolution. The Ethiopian Highlands (NW Ethiopia), characterized by a huge basaltic plateau, is part of the African Superswell, a wide region of dynamically-supported anomalously high topography related to the rising of the Afar plume. The initiation and steadiness of dynamic support beneath Ethiopia has been explored in several studies. However the presence, role, and timing of dynamic support beneath Ethiopia and its relationship with continental flood basalts volcanism and surface processes are poorly defined. Here, we present a geomorphological analysis of the Ethiopian Highlands supplying new constraints on the evolution of river network. We investigated the general topographic features (filtered topography, swath profiles, local relief) and the river network (river longitudinal profiles) of the study area. We also apply a knickpoint celerity model in order to provide a chronological framework to the evolution of the river network. The results trace the long-term progressive capture of the Ethiopian Highlands drainage system and confirm the long-term dynamic support of the area, documenting its impact on the contrasting development of the Blue Nile and Tekeze basins.

Evolution of continental-scale drainage in response to mantle dynamics and surface processes: an example from the Ethiopian Highlands.

NASA Astrophysics Data System (ADS)

Sembroni, Andrea; Molin, Paola; Pazzaglia, Frank J.; Faccenna, Claudio; Abebe, Bekele

2016-04-01

Ethiopia offers an excellent opportunity to study the effects and linkage between mantle dynamics and surface processes on landscape evolution. The Ethiopian Highlands (NW Ethiopia), characterized by a huge basaltic plateau, is part of the African Superswell, a wide region of dynamically-supported anomalously high topography related to the rising of the Afar plume. The initiation and steadiness of dynamic support beneath Ethiopia has been explored in several studies. However the presence, role, and timing of dynamic support beneath Ethiopia and its relationship with continental flood basalts volcanism and surface processes are poorly defined. Here, we present a geomorphological analysis of the Ethiopian Highlands supplying new constrains on the evolution of river network. We investigated the general topographic features (filtered topography, swath profiles, local relief) and the river network (river longitudinal profiles) of the study area. We also apply a knickpoint celerity model in order to provide a chronological framework to the evolution of the river network. The results trace the long-term progressive capture of the Ethiopian Highlands drainage system and confirm the long-term dynamic support of the area, documenting its impact on the contrasting development of the Blue Nile and Tekeze basins.

Aerosol effect on the evolution of the thermodynamic properties of warm convective cloud fields

PubMed Central

Dagan, Guy; Koren, Ilan; Altaratz, Orit; Heiblum, Reuven H.

2016-01-01

Convective cloud formation and evolution strongly depend on environmental temperature and humidity profiles. The forming clouds change the profiles that created them by redistributing heat and moisture. Here we show that the evolution of the field’s thermodynamic properties depends heavily on the concentration of aerosol, liquid or solid particles suspended in the atmosphere. Under polluted conditions, rain formation is suppressed and the non-precipitating clouds act to warm the lower part of the cloudy layer (where there is net condensation) and cool and moisten the upper part of the cloudy layer (where there is net evaporation), thereby destabilizing the layer. Under clean conditions, precipitation causes net warming of the cloudy layer and net cooling of the sub-cloud layer (driven by rain evaporation), which together act to stabilize the atmosphere with time. Previous studies have examined different aspects of the effects of clouds on their environment. Here, we offer a complete analysis of the cloudy atmosphere, spanning the aerosol effect from instability-consumption to enhancement, below, inside and above warm clouds, showing the temporal evolution of the effects. We propose a direct measure for the magnitude and sign of the aerosol effect on thermodynamic instability. PMID:27929097

Aerosol effect on the evolution of the thermodynamic properties of warm convective cloud fields.

PubMed

Dagan, Guy; Koren, Ilan; Altaratz, Orit; Heiblum, Reuven H

2016-12-08

Convective cloud formation and evolution strongly depend on environmental temperature and humidity profiles. The forming clouds change the profiles that created them by redistributing heat and moisture. Here we show that the evolution of the field's thermodynamic properties depends heavily on the concentration of aerosol, liquid or solid particles suspended in the atmosphere. Under polluted conditions, rain formation is suppressed and the non-precipitating clouds act to warm the lower part of the cloudy layer (where there is net condensation) and cool and moisten the upper part of the cloudy layer (where there is net evaporation), thereby destabilizing the layer. Under clean conditions, precipitation causes net warming of the cloudy layer and net cooling of the sub-cloud layer (driven by rain evaporation), which together act to stabilize the atmosphere with time. Previous studies have examined different aspects of the effects of clouds on their environment. Here, we offer a complete analysis of the cloudy atmosphere, spanning the aerosol effect from instability-consumption to enhancement, below, inside and above warm clouds, showing the temporal evolution of the effects. We propose a direct measure for the magnitude and sign of the aerosol effect on thermodynamic instability.

Strain transfer through film-substrate interface and surface curvature evolution during a tensile test

NASA Astrophysics Data System (ADS)

He, Wei; Han, Meidong; Goudeau, Philippe; Bourhis, Eric Le; Renault, Pierre-Olivier; Wang, Shibin; Li, Lin-an

2018-03-01

Uniaxial tensile tests on polyimide-supported thin metal films are performed to respectively study the macroscopic strain transfer through an interface and the surface curvature evolution. With a dual digital image correlation (DIC) system, the strains of the film and the substrate can be simultaneously measured in situ during the tensile test. For the true strains below 2% (far beyond the films' elastic limit), a complete longitudinal strain transfer is present irrespective of the film thickness, residual stresses and microstructure. By means of an optical surface profiler, the three-dimensional (3D) topography of film surface can be obtained during straining. As expected, the profile of the specimen center remains almost flat in the tensile direction. Nevertheless, a relatively significant curvature evolution (of the same order with the initial curvature induced by residual stresses) is observed along the transverse direction as a result of a Poisson's ratio mismatch between the film and the substrate. Furthermore, finite element method (FEM) has been performed to simulate the curvature evolution considering the geometric nonlinearity and the perfect strain transfer at the interface, which agrees well with the experimental results.

Spring Blooms Observed with Biochemical Profiling Floats from a Chemical and Biological Perspective

NASA Astrophysics Data System (ADS)

Plant, J. N.; Johnson, K. S.; Sakamoto, C.; Jannasch, H. W.; Coletti, L. J.; Elrod, V.

2015-12-01

Recently there has been renewed interest in the mechanisms which control the seasonal increases in plankton biomass (spring blooms). Changes in physical and chemical forcing (light, wind, heat and nutrients) may increase the specific growth rate of phytoplankton. These changes may also shift the predator - prey relationships within the food web structure, which can alter the balance between plankton growth and loss rates. Biogeochemical profiling floats provide a means to observe the seasonal evolution of spring blooms from a physical, chemical and biological perspective in near real time. Floats equipped with optical sensors to measure nitrate, oxygen, chlorophyll fluorescence, and optical backscatter now have a presence in many ocean regions including the North Pacific, Subarctic Pacific, North Atlantic, South Atlantic and the Southern Ocean. Data from these regions are used to compare and contrast the evolution of spring blooms. The evolution of the bloom is examined using both chemical (oxygen, nitrate) and biooptical (phytoplankton from chlorophyll fluorescence and particulate organic carbon from optical backscatter) sensors under vastly different environmental conditions.

Hydraulic evolution of high-density turbidity currents from the Brushy Canyon Formation, Eddy County, New Mexico inferred by comparison to settling and sorting experiments

NASA Astrophysics Data System (ADS)

Motanated, Kannipa; Tice, Michael M.

2016-05-01

Hydraulic transformations in turbidity currents are commonly driven by or reflected in changes in suspended sediment concentrations, but changes preceding transformations can be difficult to diagnose because they do not produce qualitative changes in resultant deposits. This study integrates particle settling experiments and in situ detection of hydraulically contrasting particles in turbidites in order to infer changes in suspended sediment concentration during deposition of massive (Bouma Ta) sandstone divisions. Because grains of contrasting density are differentially sorted during hindered settling from dense suspensions, relative grading patterns can be used to estimate suspended sediment concentrations and interpret hydraulic evolution of the depositing turbidity currents. Differential settling of dense particles (aluminum ballotini) through suspensions of hydraulically coarser light particles (silica ballotini) with volumetric concentration, Cv, were studied in a thin vessel by using particle-image-velocimetry. At high Cv, aluminum particles were less retarded than co-sedimenting silica particles, and effectively settled as hydraulically coarser grains. This was because particles were entrained into clusters dominated by the settling behavior of the silica particles. Terminal settling velocities of both particles converged at Cv ≥ 25%, and particle sorting was diminished. The results of settling experiments were applied to understand settling of analogous feldspar and zircon grains in natural turbidity flows. Distributions of light and heavy mineral grains in massive sandstones, Bouma Ta divisions, of turbidites from the Middle Permian Brushy Canyon Formation were observed in situ by X-ray fluorescence microscopy (μXRF). Hydraulic sorting of these grains resulted in characteristic patterns of zirconium abundance that decreased from base to top within Ta divisions. These profiles resulted from upward fining of zircon grains with respect to co-occurring feldspar grains. Although calculated settling velocity distributions for zircon grains in structureless sandstones were slower than those for feldspar grains at infinite dilution, calculated settling velocity distributions for zircon and feldspar grains in overlying black siltstone layers were identical. This evidence suggests that these sandstone divisions were deposited from hyperconcentrated suspensions where particle segregation was diminished and hydraulically fine grains were entrained with hydraulically coarse particles. Hydraulic fining of zircon grains during deposition implies that the suspended sediment concentration at the bases of turbidity currents increased even as the overall current evolved toward lower density as reflected by cessation of Ta deposition and by hydraulic equivalence of zircon and feldspar grains in overlying low-density turbiditic siltstones. This evolution likely resulted from volumetric collapse of the turbidity currents.

Spatio-temporal Evolution of Velocity Structure, Concentration and Grain-size Stratification within Experimental Particulate Gravity Flows: Potential Input Parameters for Numerical Models

NASA Astrophysics Data System (ADS)

McCaffrey, W.; Choux, C.; Baas, J.; Haughton, P.

2001-12-01

Little is known about the combined spatio-temporal evolution of velocity structure, concentration and grain size stratification within particulate gravity currents. Yet these data are of primary importance for numerical model validation, prior to application to natural flows, such as pyroclastic density currents and turbidity currents. A comprehensive study was carried out on a series of experimental particulate gravity flows of 5% by volume initial concentration. The sediment analogue was polydisperse silica flour (mean grain size ~8 microns). A uniform 30 liter suspension was prepared in an overhead reservoir, then allowed to drain (in about one minute) into an flume 10 m long and 0.3 m wide, water-filled to a depth of 0.3 m. Each flow was siphoned continuously for 52 s at 5 different heights (spaced evenly from 0.6 to 4.6 cm) with samples collected at a frequency of 0.25Hz, generating 325 samples for grain-size and concentration analysis. Simultaneously, six 4-MHz UDVP (Ultrasonic Doppler Velocity Profiling) probes recorded the horizontal component of flow velocity. All but the highest probe were positioned at the same height as the siphons. The sampling location was shifted 1.32m down-current for each of five nominally identical flows, yielding sample locations at 1.32, 2.64, 3.96, 5.28 and 6.60m from the inlet point. These data can be combined to give both the temporal and spatial evolution of a single idealised flow. The concentration data can be used to defined the structure of the flow. The flow first propagated as a jet, then became stratified. The length of the head increased with increasing distance from the reservoir (although the head propagation velocity was uniform). The maximum concentration was located at the base of the flow towards the rear of the head. Grain-size analysis showed that the head was enriched in coarse particles even at the most distal sampling location. Distinct flow stratification developed at a distance between 1.3 m and 2.6 m from the reservoir. In the body of the current, the suspended sediment was normally graded, whereas the tail exhibited inverse grading. This inverse grading may be linked to coarse particles in the head being swept upwards and backwards, then falling back into the body of the current. Alternatively, body turbulence may inhibit the settling of coarse particles. Turbulence may also explain the presence of coarse particles in the flow's head, with turbulence intensity apparently correlated with the flow competence.

Modifications to the edge current profile with auxiliary edge current drive and improved confinement in a reversed-field pinch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chapman, B.E.; Biewer, T.M.; Chattopadhyay, P.K.

2000-09-01

Auxiliary edge current drive is routinely applied in the Madison Symmetric Torus [R.N. Dexter, D. W. Kerst, T.W. Lovell et.al., Fusion Technol. 19, 131 (1991)] with the goal of modifying the parallel current profile to reduce current- driven magnetic fluctuations and the associated particle and energy transport. Provided by an inductive electric field, the current drive successfully reduces energy transport. First-time measurements of the modified edge current profile reveal that, relative to discharges without auxiliary current drive, the edge current density decreases. This decrease is explicable in terms of newly measured reductions in the dynamo (fluctuation-based) electric field and themore » electrical conductivity. Induced by the current drive, these two changes to the edge plasma play as much of a role in determining the resultant edge current profile as does the current drive itself.« less

Cluster galaxy population evolution from the Subaru Hyper Suprime-Cam survey: brightest cluster galaxies, stellar mass distribution, and active galaxies

NASA Astrophysics Data System (ADS)

Lin, Yen-Ting; Hsieh, Bau-Ching; Lin, Sheng-Chieh; Oguri, Masamune; Chen, Kai-Feng; Tanaka, Masayuki; Chiu, I.-non; Huang, Song; Kodama, Tadayuki; Leauthaud, Alexie; More, Surhud; Nishizawa, Atsushi J.; Bundy, Kevin; Lin, Lihwai; Miyazaki, Satoshi; HSC Collaboration

2018-01-01

The unprecedented depth and area surveyed by the Subaru Strategic Program with the Hyper Suprime-Cam (HSC-SSP) have enabled us to construct and publish the largest distant cluster sample out to z~1 to date. In this exploratory study of cluster galaxy evolution from z=1 to z=0.3, we investigate the stellar mass assembly history of brightest cluster galaxies (BCGs), and evolution of stellar mass and luminosity distributions, stellar mass surface density profile, as well as the population of radio galaxies. Our analysis is the first high redshift application of the top N richest cluster selection, which is shown to allow us to trace the cluster galaxy evolution faithfully. Our stellar mass is derived from a machine-learning algorithm, which we show to be unbiased and accurate with respect to the COSMOS data. We find very mild stellar mass growth in BCGs, and no evidence for evolution in both the total stellar mass-cluster mass correlation and the shape of the stellar mass surface density profile. The clusters are found to contain more red galaxies compared to the expectations from the field, even after the differences in density between the two environments have been taken into account. We also present the first measurement of the radio luminosity distribution in clusters out to z~1.

Most Detailed Direct Measurements Yet of Turbidity Currents in the Deep Ocean: Monterey Coordinated Canyon Experiment

NASA Astrophysics Data System (ADS)

Paull, C. K.; Anderson, K.; Barry, J. P.; Caress, D. W.; Chaffey, M. R.; Gales, J. A.; Gwiazda, R.; Kieft, B.; Lundsten, E. M.; Maier, K. L.; McCann, M. P.; McGann, M.; O'Reilly, T. C.; Parsons, D. R.; Rosenberger, K. J.; Sumner, E.; Talling, P. J.; Xu, J.

2016-12-01

Submarine sediment gravity flows (turbidity currents) are among the most important sediment transport processes on Earth, yet there are remarkably few direct measurements of these events in action. The ongoing multi-institution Coordinated Canyon Experiment (CCE) is providing detailed measurements of turbidity currents using multiple sensors and sediment traps deployed in the axis of Monterey Canyon, offshore California, in 6-month long deployments from October 2015 to April 2017 together with seafloor sampling and repeated mapping of seafloor morphology. No previous study has deployed such a dense array of sensors along a turbidity current pathway. Instrumentation includes: an array of 6 moorings carrying downward looking acoustic Doppler current profilers (ADCP) and sediment traps distributed along the canyon axis from 270 to 1,850 m water depth; a benthic instrument node at 1,840 m holding ADCPs of three different frequencies recording on a common time base, as well as salinity, temperature, and turbidity sensors; a McLane profiler at 1,830 m monitoring the lower 500 m of the water column; an array of benthic event detectors (smart boulders) that record their transport within the base of a flow; and precision triangulation beacons to assess creep within the canyon floor. Repeated mapping of the canyon floor at nested grid resolutions ranging from 1-m to 1-cm is being conducted to understand changes in canyon floor morphology. The first 6-month long deployment has been completed and 8 sediment transport events recorded. Seven of these events were restricted to <520 m water depths. However, on January 15th 2016 a sediment-laden turbidity flow ran out for >50 km from <279 m to >1,860 m water depth with an average velocity of 5.4 m/sec. Individual moorings and instruments moved down-canyon up to 7.8 km during this event. The novel instrument array and mapping tools have successfully recorded the down-canyon evolution of the powerful flow in spectacular detail.

Intra-tumor heterogeneity in breast cancer has limited impact on transcriptomic-based molecular profiling.

PubMed

Karthik, Govindasamy-Muralidharan; Rantalainen, Mattias; Stålhammar, Gustav; Lövrot, John; Ullah, Ikram; Alkodsi, Amjad; Ma, Ran; Wedlund, Lena; Lindberg, Johan; Frisell, Jan; Bergh, Jonas; Hartman, Johan

2017-11-29

Transcriptomic profiling of breast tumors provides opportunity for subtyping and molecular-based patient stratification. In diagnostic applications the specimen profiled should be representative of the expression profile of the whole tumor and ideally capture properties of the most aggressive part of the tumor. However, breast cancers commonly exhibit intra-tumor heterogeneity at molecular, genomic and in phenotypic level, which can arise during tumor evolution. Currently it is not established to what extent a random sampling approach may influence molecular breast cancer diagnostics. In this study we applied RNA-sequencing to quantify gene expression in 43 pieces (2-5 pieces per tumor) from 12 breast tumors (Cohort 1). We determined molecular subtype and transcriptomic grade for all tumor pieces and analysed to what extent pieces originating from the same tumors are concordant or discordant with each other. Additionally, we validated our finding in an independent cohort consisting of 19 pieces (2-6 pieces per tumor) from 6 breast tumors (Cohort 2) profiled using microarray technique. Exome sequencing was also performed on this cohort, to investigate the extent of intra-tumor genomic heterogeneity versus the intra-tumor molecular subtype classifications. Molecular subtyping was consistent in 11 out of 12 tumors and transcriptomic grade assignments were consistent in 11 out of 12 tumors as well. Molecular subtype predictions revealed consistent subtypes in four out of six patients in this cohort 2. Interestingly, we observed extensive intra-tumor genomic heterogeneity in these tumor pieces but not in their molecular subtype classifications. Our results suggest that macroscopic intra-tumoral transcriptomic heterogeneity is limited and unlikely to have an impact on molecular diagnostics for most patients.

First measurement of time evolution of electron temperature profiles with Nd:YAG Thomson scattering system on Heliotron J.

PubMed

Kenmochi, N; Minami, T; Takahashi, C; Tei, S; Mizuuchi, T; Kobayashi, S; Nagasaki, K; Nakamura, Y; Okada, H; Kado, S; Yamamoto, S; Ohshima, S; Konoshima, S; Shi, N; Zang, L; Ohtani, Y; Kasajima, K; Sano, F

2014-11-01

A Nd:YAG Thomson scattering system has been developed for Heliotron J. The system consists of two 550 mJ 50 Hz lasers, large collection optics, and 25 radial channel (∼1 cm spatial resolution) interference polychromators. This measurement system achieves a S/N ratio of ∼50 for low-density plasma (ne ∼ 0.5 × 10(19) m(-3)). A time evolution of electron temperature profiles was measured with this system for a high-intensity gas-puff (HIGP) fueling neutral-beam-injection plasma. The peripheral temperature of the higher-density phase after HIGP recovers to the low-density pre-HIGP level, suggesting that improving particle transport in the HIGP plasma may be possible.

Phylogenetic ctDNA analysis depicts early stage lung cancer evolution

PubMed Central

Abbosh, Christopher; Birkbak, Nicolai J.; Wilson, Gareth A.; Jamal-Hanjani, Mariam; Constantin, Tudor; Salari, Raheleh; Le Quesne, John; Moore, David A; Veeriah, Selvaraju; Rosenthal, Rachel; Marafioti, Teresa; Kirkizlar, Eser; Watkins, Thomas B K; McGranahan, Nicholas; Ward, Sophia; Martinson, Luke; Riley, Joan; Fraioli, Francesco; Al Bakir, Maise; Grönroos, Eva; Zambrana, Francisco; Endozo, Raymondo; Bi, Wenya Linda; Fennessy, Fiona M.; Sponer, Nicole; Johnson, Diana; Laycock, Joanne; Shafi, Seema; Czyzewska-Khan, Justyna; Rowan, Andrew; Chambers, Tim; Matthews, Nik; Turajlic, Samra; Hiley, Crispin; Lee, Siow Ming; Forster, Martin D.; Ahmad, Tanya; Falzon, Mary; Borg, Elaine; Lawrence, David; Hayward, Martin; Kolvekar, Shyam; Panagiotopoulos, Nikolaos; Janes, Sam M; Thakrar, Ricky; Ahmed, Asia; Blackhall, Fiona; Summers, Yvonne; Hafez, Dina; Naik, Ashwini; Ganguly, Apratim; Kareht, Stephanie; Shah, Rajesh; Joseph, Leena; Quinn, Anne Marie; Crosbie, Phil; Naidu, Babu; Middleton, Gary; Langman, Gerald; Trotter, Simon; Nicolson, Marianne; Remmen, Hardy; Kerr, Keith; Chetty, Mahendran; Gomersall, Lesley; Fennell, Dean; Nakas, Apostolos; Rathinam, Sridhar; Anand, Girija; Khan, Sajid; Russell, Peter; Ezhil, Veni; Ismail, Babikir; Irvin-sellers, Melanie; Prakash, Vineet; Lester, Jason; Kornaszewska, Malgorzata; Attanoos, Richard; Adams, Haydn; Davies, Helen; Oukrif, Dahmane; Akarca, Ayse U; Hartley, John A; Lowe, Helen L; Lock, Sara; Iles, Natasha; Bell, Harriet; Ngai, Yenting; Elgar, Greg; Szallasi, Zoltan; Schwarz, Roland F; Herrero, Javier; Stewart, Aengus; Quezada, Sergio A; Peggs, Karl S.; Van Loo, Peter; Dive, Caroline; Lin, Jimmy; Rabinowitz, Matthew; Aerts, Hugo JWL; Hackshaw, Allan; Shaw, Jacqui A; Zimmermann, Bernhard G.; Swanton, Charles

2017-01-01

Summary The early detection of relapse following primary surgery for non-small cell lung cancer and the characterization of emerging subclones seeding metastatic sites might offer new therapeutic approaches to limit tumor recurrence. The potential to non-invasively track tumor evolutionary dynamics in ctDNA of early-stage lung cancer is not established. Here we conduct a tumour-specific phylogenetic approach to ctDNA profiling in the first 100 TRACERx (TRAcking non-small cell lung Cancer Evolution through therapy (Rx)) study participants, including one patient co-recruited to the PEACE (Posthumous Evaluation of Advanced Cancer Environment) post-mortem study. We identify independent predictors of ctDNA release and perform tumor volume limit of detection analyses. Through blinded profiling of post-operative plasma, we observe evidence of adjuvant chemotherapy resistance and identify patients destined to experience recurrence of their lung cancer. Finally, we show that phylogenetic ctDNA profiling tracks the subclonal nature of lung cancer relapse and metastases, providing a new approach for ctDNA driven therapeutic studies PMID:28445469

Correlation of ion and beam current densities in Kaufman thrusters.

NASA Technical Reports Server (NTRS)

Wilbur, P. J.

1973-01-01

In the absence of direct impingement erosion, electrostatic thruster accelerator grid lifetime is defined by the charge exchange erosion that occurs at peak values of the ion beam current density. In order to maximize the thrust from an engine with a specified grid lifetime, the ion beam current density profile should therefore be as flat as possible. Knauer (1970) has suggested this can be achieved by establishing a radial plasma uniformity within the thruster discharge chamber; his tests with the radial field thruster provide an example of uniform plasma properties within the chamber and a flat ion beam profile occurring together. It is shown that, in particular, the ion density profile within the chamber determines the beam current density profile, and that a uniform ion density profile at the screen grid end of the discharge chamber should lead to a flat beam current density profile.

Sinusoidal current and stress evolutions in lithium-ion batteries

NASA Astrophysics Data System (ADS)

Yang, Xiao-Guang; Bauer, Christoph; Wang, Chao-Yang

2016-09-01

Mechanical breakdown of graphite materials due to diffusion-induced stress (DIS) is a key aging mechanism of lithium-ion batteries. In this work, electrochemical-thermal coupled model along with a DIS model is developed to study the DIS distribution across the anode thickness. Special attention is paid to the evolution behavior of surface tangential stress (STS) in the discharge process for graphite at different locations of the anode. For the first time, we report that the evolution of STS, as well as local current, at all locations of the anode, evolve like sinusoidal waves in the discharge process with several crests and troughs. The staging behavior of graphite active material, in particular the sharp change of open-circuit potential (OCP) of graphite in the region between two plateaus, is found to be the root cause for the sinusoidal patterns of current and stress evolution. Furthermore, the effects of various parameters, such as starting state of charge, discharge C-rate and electrode thickness on the current and stress evolutions are investigated.

Neural network evaluation of tokamak current profiles for real time control

NASA Astrophysics Data System (ADS)

Wróblewski, Dariusz

1997-02-01

Active feedback control of the current profile, requiring real-time determination of the current profile parameters, is envisioned for tokamaks operating in enhanced confinement regimes. The distribution of toroidal current in a tokamak is now routinely evaluated based on external (magnetic probes, flux loops) and internal (motional Stark effect) measurements of the poloidal magnetic field. However, the analysis involves reconstruction of magnetohydrodynamic equilibrium and is too intensive computationally to be performed in real time. In the present study, a neural network is used to provide a mapping from the magnetic measurements (internal and external) to selected parameters of the safety factor profile. The single-pass, feedforward calculation of output of a trained neural network is very fast, making this approach particularly suitable for real-time applications. The network was trained on a large set of simulated equilibrium data for the DIII-D tokamak. The database encompasses a large variety of current profiles including the hollow current profiles important for reversed central shear operation. The parameters of safety factor profile (a quantity related to the current profile through the magnetic field tilt angle) estimated by the neural network include central safety factor, q0, minimum value of q, qmin, and the location of qmin. Very good performance of the trained neural network both for simulated test data and for experimental datais demonstrated.

Neural network evaluation of tokamak current profiles for real time control (abstract)

NASA Astrophysics Data System (ADS)

Wróblewski, Dariusz

1997-01-01

Active feedback control of the current profile, requiring real-time determination of the current profile parameters, is envisioned for tokamaks operating in enhanced confinement regimes. The distribution of toroidal current in a tokamak is now routinely evaluated based on external (magnetic probes, flux loops) and internal (motional Stark effect) measurements of the poloidal magnetic field. However, the analysis involves reconstruction of magnetohydrodynamic equilibrium and is too intensive computationally to be performed in real time. In the present study, a neural network is used to provide a mapping from the magnetic measurements (internal and external) to selected parameters of the safety factor profile. The single-pass, feedforward calculation of output of a trained neural network is very fast, making this approach particularly suitable for real-time applications. The network was trained on a large set of simulated equilibrium data for the DIII-D tokamak. The database encompasses a large variety of current profiles including the hollow current profiles important for reversed central shear operation. The parameters of safety factor profile (a quantity related to the current profile through the magnetic field tilt angle) estimated by the neural network include central safety factor, q0, minimum value of q, qmin, and the location of qmin. Very good performance of the trained neural network both for simulated test data and for experimental data is demonstrated.

The Structure and Kinematics of Little Blue Spheroid Galaxies

NASA Astrophysics Data System (ADS)

Moffett, Amanda J.; Phillipps, Steven; Robotham, Aaron; Driver, Simon; Bremer, Malcolm; GAMA survey team, SAMI survey team

2018-01-01

A population of blue, morphologically early-type galaxies, dubbed "Little Blue Spheroids" (LBSs), has been identified as a significant contributor to the low redshift galaxy population in the GAMA survey. Using deep, high-resolution optical imaging from KiDS and the new Bayesian, two-dimensional galaxy profile modelling code PROFIT, we examine the detailed structural characteristics of LBSs, including low surface brightness components not detected in previous SDSS imaging. We find that these LBS galaxies combine features typical of early-type and late-type populations, with structural properties similar to other low-mass early types and star formation rates similar to low-mass late types. We further consider the environments and SAMI-derived IFU kinematics of LBSs in order to investigate the conditions of their formation and the current state of their dynamical evolution.

A review on solder reflow and flux application for flip chip

NASA Astrophysics Data System (ADS)

Suppiah, Sarveshvaran; Ong, Nestor Rubio; Sauli, Zaliman; Sarukunaselan, Karunavani; Alcain, Jesselyn Barro; Visvanathan, Susthitha Menon; Retnasamy, Vithyacharan

2017-09-01

This paper encompassed of the evolution and key findings, critical technical challenges, solutions and bonding equipment of solder reflow in flip chip bonding. Upon scrutinizing researches done by others, it can be deduced that peak temperature, time above liquidus, soak temperature, soak time, cooling rate and reflow environment played a vital role in achieving the desired bonding profile. In addition, flux is also needed with the purpose of removing oxides/contaminations on bump surface as well as to promote wetting of solder balls. Electromigration and warpage are the two main challenges faced by solder reflow process which can be overcome by the advancement in under bump metallization (UBM) and substrate technology. The review is ended with a brief description of the current equipment used in solder reflow process.

Impacts of Quaternary History on Critical Zone Structure and Processes: Examples and a Conceptual Model from the Intensively Managed Landscapes Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Anders, Alison M.; Bettis, E. Arthur; Grimley, David A.; Stumpf, Andrew J.; Kumar, Praveen

2018-03-01

The concept of a critical zone (CZ) supporting terrestrial life has fostered groundbreaking interdisciplinary science addressing complex interactions among water, soil, rock, air and life near Earth’s surface. Pioneering work has focused on the CZ in areas with residual soils and steady-state or erosional topography. CZ evolution in these areas is conceptualized as progressive weathering of local bedrock (e.g. in the flow-through reactor model). However, this model is not applicable to areas in which weathering profiles form in transported materials including the formerly glaciated portion of the Central Lowland of North America. We present a new conceptual model of CZ evolution in landscapes impacted by continental glaciation based on investigations at three study sites in the Intensively Managed Landscapes Critical Zone Observatory (IML-CZO) The IML-CZO is devoted to the study of CZ processes in a region characterized by thick surficial deposits resulting from multiple continental glaciations, with bedrock at depths of up to 150 m. Here the physical (glacial ice, loess, developing soil profiles) and biological (microbes, tundra, forest, prairie) components of the CZ vary significantly in time. Moreover, the spatial relationships between mineral components of the CZ record a history of glacial-interglacial cycles and landscape evolution. We present cross-sections from IML-CZO sites to provide specific examples of how environmental change is recorded by the structure of the mineral components of the CZ. We build on these examples to create an idealized model of CZ evolution through a glacial cycle that represents the IML-CZO sites and other areas of low relief that have experienced continental glaciation. In addition, we identify two main characteristics of CZ structure which should be included in a conceptual model of CZ development in the IML-CZO and similar settings: (1) mineral components have diverse origins and transport trajectories including alteration in past CZs, and, (2) variability in climate, ecosystems, and hydrology during glacial-interglacial cycles profoundly influence the CZ composition, creating a legacy retained in its structure. This legacy is important because the current physical CZ structure influences the occurrence and rates of CZ processes, as well as future CZ responses to land use and climate change.

Field Guide to Soils. Earth Science Curriculum Project Pamphlet Series PS-2.

ERIC Educational Resources Information Center

Foth, Henry; Jacobs, Hyde S.

Discussed are the importance of soil to plant and animal life, the evolution of a soil profile, and the major kinds of soil in the United States. On a suggested field trip, students examine different kinds of soil profiles; they also measure soil acidity and water-holding capacity. Suggestions for further study are provided along with references…

Internal dark matter structure of the most massive galaxy clusters

NASA Astrophysics Data System (ADS)

Le Brun, A. M. C.; Arnaud, M.; Pratt, G. W.; Teyssier, R.

2018-01-01

We investigate the evolution of the dark matter density profiles of the most massive galaxy clusters in the Universe. Using a `zoom-in' procedure on a large suite of cosmological simulations of total comoving volume of 3 (h - 1 Gpc)3, we study the 25 most massive clusters in four redshift slices from z ˜ 1 to the present. The minimum mass is M500 > 5.5 × 1014 M⊙ at z = 1. Each system has more than two million particles within r500. Once scaled to the critical density at each redshift, the dark matter profiles within r500 are strikingly similar from z ˜ 1 to the present day, exhibiting a low dispersion of 0.15 dex, and showing little evolution with redshift in the radial logarithmic slope and scatter. They have the running power-law shape typical of the Navarro-Frenk-White type profiles, and their inner structure, resolved to 3.8 h-1 comoving kpc at z = 1, shows no signs of converging to an asymptotic slope. Our results suggest that this type of profile is already in place at z > 1 in the highest-mass haloes in the Universe, and that it remains exceptionally robust to merging activity.

Observation of instability-induced current redistribution in a spherical-torus plasma.

PubMed

Menard, J E; Bell, R E; Gates, D A; Kaye, S M; LeBlanc, B P; Levinton, F M; Medley, S S; Sabbagh, S A; Stutman, D; Tritz, K; Yuh, H

2006-09-01

A motional Stark effect diagnostic has been utilized to reconstruct the parallel current density profile in a spherical-torus plasma for the first time. The measured current profile compares favorably with neoclassical theory when no large-scale magnetohydrodynamic instabilities are present in the plasma. However, a current profile anomaly is observed during saturated interchange-type instability activity. This apparent anomaly can be explained by redistribution of neutral beam injection current drive and represents the first observation of interchange-type instabilities causing such redistribution. The associated current profile modifications contribute to sustaining the central safety factor above unity for over five resistive diffusion times, and similar processes may contribute to improved operational scenarios proposed for ITER.

Striking cuticular hydrocarbon dimorphism in the mason wasp Odynerus spinipes and its possible evolutionary cause (Hymenoptera: Chrysididae, Vespidae)

PubMed Central

Herbertz, Sina; Kroiss, Johannes; Strohm, Erhard; Baur, Hannes; Niehuis, Oliver; Schmitt, Thomas

2015-01-01

Cleptoparasitic wasps and bees smuggle their eggs into the nest of a host organism. Here the larvae of the cleptoparasite feed upon the food provision intended for the offspring of the host. As cleptoparasitism incurs a loss of fitness for the host organism (offspring of the host fail to develop), hosts of cleptoparasites are expected to exploit cues that alert them to potential cleptoparasite infestation. Cuticular hydrocarbons (CHCs) could serve as such cues, as insects inevitably leave traces of them behind when entering a nest. By mimicking the host's CHC profile, cleptoparasites can conceal their presence and evade detection by their host. Previous studies have provided evidence of cleptoparasites mimicking their host's CHC profile. However, the impact of this strategy on the evolution of the host's CHC profile has remained unexplored. Here, we present results from our investigation of a host–cleptoparasite system consisting of a single mason wasp species that serves syntopically as the host to three cuckoo wasp species. We found that the spiny mason wasp (Odynerus spinipes) is able to express two substantially different CHC profiles, each of which is seemingly mimicked by a cleptoparasitic cuckoo wasp (i.e. Chrysis mediata and Pseudospinolia neglecta). The CHC profile of the third cuckoo wasp (Chrysis viridula), a species not expected to benefit from mimicking its host's CHC profile because of its particular oviposition strategy, differs from the two CHC profiles of its host. Our results corroborate the idea that the similarity of the CHC profiles between cleptoparasitic cuckoo wasps and their hosts are the result of chemical mimicry. They further suggest that cleptoparasites may represent a hitherto unappreciated force that drives the evolution of their hosts' CHCs. PMID:26674944

Simulation of the Plasma Density Evolution during Electron Cyclotron Resonance Heating at the T-10 Tokamak

NASA Astrophysics Data System (ADS)

Dnestrovskij, Yu. N.; Vershkov, V. A.; Danilov, A. V.; Dnestrovskij, A. Yu.; Zenin, V. N.; Lysenko, S. E.; Melnikov, A. V.; Shelukhin, D. A.; Subbotin, G. F.; Cherkasov, S. V.

2018-01-01

In ohmically heated (OH) plasma with low recycling, an improved particle confinement (IPC) mode is established during gas puffing. However, after gas puffing is switched off, this mode is retained only for about 100 ms, after which an abrupt phase transition into the low particle confinement (LPC) mode occurs in the entire plasma cross section. During such a transition, energy transport due to heat conduction does not change. The phase transition in OH plasma is similar to the effect of density pump-out from the plasma core, which occurs after electron cyclotron heating (ECH) is switched on. Analysis of the measured plasma pressure profiles in the T-10 tokamak shows that, after gas puffing in the OH mode is switched off, the plasma pressure profile in the IPC stage becomes more peaked and, after the peakedness exceeds a certain critical value, the IPC-LPC transition occurs. Similar processes are also observed during ECH. If the pressure profile is insufficiently peaked during ECH, then the density pump-out effect comes into play only after the critical peakedness of the pressure profile is reached. In the plasma core, the density and pressure profiles are close to the corresponding canonical profiles. This allows one to derive an expression for the particle flux within the canonical profile model and formulate a criterion for the IPC-LPC transition. The time evolution of the plasma density profile during phase transitions was simulated for a number of T-10 shots with ECH and high recycling. The particle transport coefficients in the IPC and LPC phases, as well as the dependences of these coefficients on the ECH power, are determined.

Big-Ass Holes in the Surfzone: Waves, Currents, and Sediment Transport in a Seafloor Perturbation Experiment

NASA Astrophysics Data System (ADS)

Moulton, M. R.; Elgar, S.; Raubenheimer, B.

2010-12-01

The evolution of 2-m deep, 10-m diameter holes excavated in the inner surfzone on an energetic beach was monitored with a downward-looking current profiler at the center of each hole, a surfboard-mounted GPS-sonar survey system, and tall divers with graduated poles, tape measures, marked lines, and long arms. Waves and currents were measured with up to 14 current meters and profilers over a 1600-sq-m area. The mean water depth surrounding the holes was 1.5 m and the tidal range was 1 m. Significant wave heights ranged from 0.2 to 1.2 m, and mean current speeds ranged from 0.1 to 1.2 m/s. The surfzone holes filled with sand in 2 to 6 days, in contrast to a previous study in which holes of the same size in the swashzone filled in a few hours. Preliminary results suggest that the rate of change of the sand level in the holes was correlated more strongly with wave heights (and thus with wave-orbital velocities) than with mean current speeds. In a hole dug in the trough between a sandbar and the shoreline, the sand level rose relatively slowly (1 m in 4.5 days) when wave heights were small (0.4 m) and mean currents were increasing (from 0.15 to 0.8 m/s), then filled rapidly (0.8 m in 6 hours) as wave heights increased (to 1.1 m) and mean currents increased (to 1.2 m/s). For a second hole dug in the same location, wave heights were moderate and variable (0.3 to 0.8 m), mean flow speeds were moderate and increasing (from 0.3 to 0.7 m/s), and the hole filled steadily (1.7 m in 2.5 days). In some instances, horizontal flow patterns were consistent with rip current circulation, with converging alongshore currents feeding an offshore jet centered at the depression. Here, volume changes in the hole will be compared with the observed waves, wave-orbital velocities, mean currents, and surrounding bathymetry. These data were collected in August 2010 at the US Army Corps of Engineers Field Research Facility in Duck, North Carolina. Funded by a National Security Science and Engineering Faculty Fellowship, a National Defense Science and Engineering Graduate Fellowship, and the Office of Naval Research.

Time Evolution of the Macroscopic Characteristics of a Thin Current Sheet in the Course of Its Formation in the Earth's Magnetotail

NASA Astrophysics Data System (ADS)

Domrin, V. I.; Malova, H. V.; Popov, V. Yu.

2018-04-01

A numerical model is developed that allows tracing the time evolution of a current sheet from a relatively thick current configuration with isotropic distributions of the pressure and temperature in an extremely thin current sheet, which plays a key role in geomagnetic processes. Such a configuration is observed in the Earth's magnetotail in the stage preceding a large-scale geomagnetic disturbance (substorm). Thin current sheets are reservoirs of the free energy released during geomagnetic disturbances. The time evolution of the components of the pressure tensor caused by changes in the structure of the current sheet is investigated. It is shown that the pressure tensor in the current sheet evolves in two stages. In the first stage, a current sheet with a thickness of eight to ten proton Larmor radii forms. This stage is characterized by the plasma drift toward the current sheet and the Earth and can be described in terms of the Chu-Goldberger-Low approximation. In the second stage, an extremely thin current sheet with an anisotropic plasma pressure tensor forms, due to which the system is maintained in an equilibrium state. Estimates of the characteristic time of the system evolution agree with available experimental data.

Voyager Observations of the Color of Saturn's Ring

NASA Technical Reports Server (NTRS)

Estrada, Paul R.; Cuzzi, Jeffrey N.; Morrison, David (Technical Monitor)

1994-01-01

Previously unreduced high resolution Voyager 2 images of Saturn's main rings are used to generate reflectivity (I/F) profiles as a function of radius. Ratios of profiles taken from green, violet, orange, and UV filter images are then produced. The I/F ratios are diagnostic of composition, and provide us with information on the rings' present state of compositional evolution. The rings are extremely reddish in color which suggests that they could not be pure water ice. The most likely candidates for the non-icy components are silicates and organics. The sources of these pollutants are of extreme importance in determining the compositional history of the rings. The radial profiles of ring color ratio exhibit several very interesting properties: (a) broad-scale, fairly smooth, color variations which are only weakly correlated with underlying ring structure (optical depth variations) across the outer C ring and inner B ring as well as the Cassini division region. These variations are probably consistent with ballistic transport; (b) fine-scale, noise-Like (but unquestionably real) color variations across at least the outer two-thirds of the B ring. Not only the "redness" but the spectral shape varies. These variations are currently unexplained. Groundbased spectroscopic observations should be pursued to study the implied compositional heterogeneities on at least the larger scales. This data set will be used for modeling of the color and composition of the main rings using ballistic transport and radiative transfer theories.

The dynamics of z ~ 1 clusters of galaxies from the GCLASS survey

NASA Astrophysics Data System (ADS)

Biviano, A.; van der Burg, R. F. J.; Muzzin, A.; Sartoris, B.; Wilson, G.; Yee, H. K. C.

2016-10-01

Context. The dynamics of clusters of galaxies and its evolution provide information on their formation and growth, on the nature of dark matter and on the evolution of the baryonic components. Poor observational constraints exist so far on the dynamics of clusters at redshift z > 0.8. Aims: We aim to constrain the internal dynamics of clusters of galaxies at redshift z ~ 1, namely their mass profile M(r), velocity anisotropy profile β(r), and pseudo-phase-space density profiles Q(r) and Qr(r), obtained from the ratio between the mass density profile and the third power of the (total and, respectively, radial) velocity dispersion profiles of cluster galaxies. Methods: We used the spectroscopic and photometric data-set of 10 clusters at 0.87 < z < 1.34 from the Gemini Cluster Astrophysics Spectroscopic Survey (GCLASS). We determined the individual cluster masses from their velocity dispersions, then stack the clusters in projected phase-space. We investigated the internal dynamics of this stack cluster, using the spatial and velocity distribution of its member galaxies. We determined the stack cluster M(r) using the MAMPOSSt method, and its β(r) by direct inversion of the Jeans equation. The procedures used to determine the two aforementioned profiles also allowed us to determine Q(r) and Qr(r). Results: Several M(r) models are statistically acceptable for the stack cluster (Burkert, Einasto, Hernquist, NFW). The stack cluster total mass concentration, c ≡ r200/r-2 = 4.0-0.6+1.0, is in agreement with theoretical expectations. The total mass distribution is less concentrated than both the cluster stellar-mass and the cluster galaxies distributions. The stack cluster β(r) indicates that galaxy orbits are isotropic near the cluster center and become increasingly radially elongated with increasing cluster-centric distance. Passive and star-forming galaxies have similar β(r). The observed β(r) is similar to that of dark matter particles in simulated cosmological halos. Q(r) and Qr(r) are almost power-law relations with slopes similar to those predicted from numerical simulations of dark matter halos. Conclusions: Comparing our results with those obtained for lower-redshift clusters, we conclude that the evolution of the concentration-total mass relation and pseudo-phase-space density profiles agree with the expectations from ΛCDM cosmological simulations. The fact that Q(r) and Qr(r) already follow the theoretical expectations in z ~ 1 clusters suggest these profiles are the result of rapid dynamical relaxation processes, such as violent relaxation. The different concentrations of the total and stellar mass distribution, and their subsequent evolution, can be explained by merging processes of central galaxies leading to the formation of the brightest cluster galaxy. The orbits of passive cluster galaxies appear to become more isotropic with time, while those of star-forming galaxies do not evolve, presumably because star-formation is quenched on a shorter timescale than that required for orbital isotropization.

Bootstrap current in a tokamak

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kessel, C.E.

1994-03-01

The bootstrap current in a tokamak is examined by implementing the Hirshman-Sigmar model and comparing the predicted current profiles with those from two popular approximations. The dependences of the bootstrap current profile on the plasma properties are illustrated. The implications for steady state tokamaks are presented through two constraints; the pressure profile must be peaked and {beta}{sub p} must be kept below a critical value.

The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains.

PubMed

Pfeiffer, Friedhelm; Zamora-Lagos, Maria-Antonia; Blettinger, Martin; Yeroslaviz, Assa; Dahl, Andreas; Gruber, Stephan; Habermann, Bianca H

2018-01-05

Due to the predominant usage of short-read sequencing to date, most bacterial genome sequences reported in the last years remain at the draft level. This precludes certain types of analyses, such as the in-depth analysis of genome plasticity. Here we report the finalized genome sequence of the environmental strain Aeromonas salmonicida subsp. pectinolytica 34mel, for which only a draft genome with 253 contigs is currently available. Successful completion of the transposon-rich genome critically depended on the PacBio long read sequencing technology. Using finalized genome sequences of A. salmonicida subsp. pectinolytica and other Aeromonads, we report the detailed analysis of the transposon composition of these bacterial species. Mobilome evolution is exemplified by a complex transposon, which has shifted from pathogenicity-related to environmental-related gene content in A. salmonicida subsp. pectinolytica 34mel. Obtaining the complete, circular genome of A. salmonicida subsp. pectinolytica allowed us to perform an in-depth analysis of its mobilome. We demonstrate the mobilome-dependent evolution of this strain's genetic profile from pathogenic to environmental.

Modifications to the edge current profile with auxiliary edge current drive and improved confinement in a reversed-field pinch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chapman, B. E.; Biewer, T. M.; Chattopadhyay, P. K.

2000-09-01

Auxiliary edge current drive is routinely applied in the Madison Symmetric Torus [R. N. Dexter, D. W. Kerst, T. W. Lovell et al., Fusion Technol. 19, 131 (1991)] with the goal of modifying the parallel current profile to reduce current-driven magnetic fluctuations and the associated particle and energy transport. Provided by an inductive electric field, the current drive successfully reduces fluctuations and transport. First-time measurements of the modified edge current profile reveal that, relative to discharges without auxiliary current drive, the edge current density decreases. This decrease is explicable in terms of newly measured reductions in the dynamo (fluctuation-based) electricmore » field and the electrical conductivity. Induced by the current drive, these two changes to the edge plasma play as much of a role in determining the resultant edge current profile as does the current drive itself. (c) 2000 American Institute of Physics.« less

Surface currents associated with external kink modes in tokamak plasmas during a major disruption

NASA Astrophysics Data System (ADS)

Ng, C. S.; Bhattacharjee, A.

2017-10-01

The surface current on the plasma-vacuum interface during a disruption event involving kink instability can play an important role in driving current into the vacuum vessel. However, there have been disagreements over the nature or even the sign of the surface current in recent theoretical calculations based on idealized step-function background plasma profiles. We revisit such calculations by replacing step-function profiles with more realistic profiles characterized by a strong but finite gradient along the radial direction. It is shown that the resulting surface current is no longer a delta-function current density, but a finite and smooth current density profile with an internal structure, concentrated within the region with a strong plasma pressure gradient. Moreover, this current density profile has peaks of both signs, unlike the delta-function case with a sign opposite to, or the same as the plasma current. We show analytically and numerically that such current density can be separated into two parts, with one of them, called the convective current density, describing the transport of the background plasma density by the displacement, and the other part that remains, called the residual current density. It is argued that consideration of both types of current density is important and can resolve past controversies.

Contribution of Field Strength Gradients to the Net Vertical Current of Active Regions

NASA Astrophysics Data System (ADS)

Vemareddy, P.

2017-12-01

We examined the contribution of field strength gradients for the degree of net vertical current (NVC) neutralization in active regions (ARs). We used photospheric vector magnetic field observations of AR 11158 obtained by Helioseismic and Magnetic Imager on board SDO and Hinode. The vertical component of the electric current is decomposed into twist and shear terms. The NVC exhibits systematic evolution owing to the presence of the sheared polarity inversion line between rotating and shearing magnetic regions. We found that the sign of shear current distribution is opposite in dominant pixels (60%–65%) to that of twist current distribution, and its time profile bears no systematic trend. This result indicates that the gradient of magnetic field strength contributes to an opposite signed, though smaller in magnitude, current to that contributed by the magnetic field direction in the vertical component of the current. Consequently, the net value of the shear current is negative in both polarity regions, which when added to the net twist current reduces the direct current value in the north (B z > 0) polarity, resulting in a higher degree of NVC neutralization. We conjecture that the observed opposite signs of shear and twist currents are an indication, according to Parker, that the direct volume currents of flux tubes are canceled by their return currents, which are contributed by field strength gradients. Furthermore, with the increase of spatial resolution, we found higher values of twist, shear current distributions. However, the resolution effect is more useful in resolving the field strength gradients, and therefore suggests more contribution from shear current for the degree of NVC neutralization.

Modeling of the control of the driven current profile in ICRF MCCD on EAST plasma

NASA Astrophysics Data System (ADS)

Yin, L.; Yang, C.; Gong, X. Y.; Lu, X. Q.; Cao, J. J.; Wu, Z. Y.; Chen, Y.; Du, D.

2018-05-01

Control of the current profile is a crucial issue for improved confinement and the inhibition of instability in advanced tokamak operation. Using typical discharge data for the Experimental Advanced Superconducting Tokamak, numerical simulations of driven-current profile control in mode conversion current drive (MCCD) in the ion cyclotron range of frequencies were performed employing a full-wave method and Ehst-Karney efficiency formula. Results indicate that the driven current profile in MCCD can be effectively modified by shifting the mode conversion layer. The peak of the driven current can be located at an aimed position in the normalized minor radius range (-0.60 ≤r/a≤0) by changing the radiofrequency and the minority-ion concentration. The efficiency of the off-axis MCCD can reach 233 kA/MW through optimization, and the mode converted ion cyclotron wave plays an important role in such scenarios. The effects of electron temperature and plasma density on the driven current profile are also investigated.

Comparisons of Crosswind Velocity Profile Estimates Used in Fast-Time Wake Vortex Prediction Models

NASA Technical Reports Server (NTRS)

Pruis, Mathew J.; Delisi, Donald P.; Ahmad, Nashat N.

2011-01-01

Five methods for estimating crosswind profiles used in fast-time wake vortex prediction models are compared in this study. Previous investigations have shown that temporal and spatial variations in the crosswind vertical profile have a large impact on the transport and time evolution of the trailing vortex pair. The most important crosswind parameters are the magnitude of the crosswind and the gradient in the crosswind shear. It is known that pulsed and continuous wave lidar measurements can provide good estimates of the wind profile in the vicinity of airports. In this study comparisons are made between estimates of the crosswind profiles from a priori information on the trajectory of the vortex pair as well as crosswind profiles derived from different sensors and a regional numerical weather prediction model.

Geomorphological approach in karstic domain: importance of underground water in the Jura mountains.

NASA Astrophysics Data System (ADS)

Rabin, Mickael; Sue, Christian; Champagnac, Jean Daniel; Bichet, Vincent; Carry, Nicolas; Eichenberger, Urs; Mudry, Jacques; Valla, Pierre

2014-05-01

The Jura mountain belt is the north-westernmost and one of the most recent expressions of the Alpine orogeny (i.e. Mio-Pliocene times). The Jura has been well studied from a structural framework, but still remains the source of scientific debates, especially regarding its current and recent tectonic activity [Laubscher, 1992; Burkhard and Sommaruga, 1998]. It is deemed to be always in a shortening state, according to leveling data [Jouanne et al., 1998] and neotectonic observations [Madritsch et al., 2010]. However, the few GPS data available on the Jura do not show evidence of shortening, but rather a low-magnitude extension parallel to the arc [Walpersdorf et al., 2006]. Moreover, the traditionally accepted assumption of a collisional activity of the Jura raises the question of its geodynamic origin. The Western Alps are themselves in a post-collisional regime and characterized by a noticeable isostatic-related extension, due to the interaction between buoyancy forces and external dynamics [Sue et al., 2007]. Quantitative morphotectonic approaches have been increasingly used in active mountain belts to infer relationship between climates and tectonics in landscape evolution [Whipple, 2009]. In this study, we propose to apply morphometric tools to calcareous bedrock, in a slowly deformed mountain belt. In particular, we have used watersheds metrics determination and associated river profiles analysis to allow quantifying the degree and nature of the equilibrium between the tectonic forcing and the fluvial erosional agent [Kirby and Whipple, 2001]. Indeed, long-term river profiles evolution is controlled by climatic and tectonic forcing through the following expression [Whipple and Tucker, 1999]: S = (U / K) 1/n Am/n (with U: uplift rate, K: empirical erodibility factor, function of hydrological and geological settings; A: drained area, m, n: empirical parameters). We present here a systematic analysis of river profiles applied to the main drainage system of the Jura. The objective is to assess to what extent this powerful landscape analysis tool will be applicable to limestone bedrock settings where groundwater flow might be an important component of the hydrological system. First results show that river slopes and knickpoints are poorly controlled by lithological variation within the Jura mountains. Quantitative analyses reveal abnormal longitudinal profiles, which are controlled by either tectonic and/or karstic processes. Evaluating the contribution of both tectonics and karst influence in the destabilization of river profiles is challenging and appears still unresolved. However these morphometrics signals seem to be in accordance with the presence of active N-S to NW-SE strike-slip faults, controlling both surface runoff and groundwater flow.

The use of vertical seismic profiles in seismic investigations of the earth

USGS Publications Warehouse

Balch, Alfred H.; Lee, M.W.; Miller, J.J.; Ryder, Robert T.

1982-01-01

During the past 8 years, the U.S. Geological Survey has conducted an extensive investigation on the use of vertical seismic profiles (VSP) in a variety of seismic exploration applications. Seismic sources used were surface air guns, vibrators, explosives, marine air guns, and downhole air guns. Source offsets have ranged from 100 to 7800 ft. Well depths have been from 1200 to over 10,000 ft. We have found three specific ways in which VSPs can be applied to seismic exploration. First, seismic events observed at the surface of the ground can be traced, level by level, to their point of origin within the earth. Thus, one can tie a surface profile to a well log with an extraordinarily high degree of confidence. Second, one can establish the detectability of a target horizon, such as a porous zone. One can determine (either before or after surface profiling) whether or not a given horizon or layered sequence returns a detectable reflection to the surface. The amplitude and character of the reflection can also be observed. Third, acoustic properties of a stratigraphic sequence can be measured and sometimes correlated to important exploration parameters. For example, sometimes a relationship between apparent attenuation and sand percentage can be established. The technique shows additional promise of aiding surface exploration indirectly through studies of the evolution of the seismic pulse, studies of ghosts and multiples, and studies of seismic trace inversion techniques. Nearly all current seismic data‐processing techniques are adaptable to the processing of VSP data, such as normal moveout (NMO) corrections, stacking, single‐and multiple‐channel filtering, deconvolution, and wavelet shaping.

Electrical sensing of the dynamical structure of the planetary boundary layer

NASA Astrophysics Data System (ADS)

Nicoll, K. A.; Harrison, R. G.; Silva, H. G.; Salgado, R.; Melgâo, M.; Bortoli, D.

2018-04-01

Turbulent and convective processes within the planetary boundary layer are responsible for the transport of moisture, momentum and particulate matter, but are also important in determining the electrical charge transport of the lower atmosphere. This paper presents the first high resolution vertical charge profiles during fair weather conditions, obtained with instrumented radiosonde balloons over Alqueva, Portugal during the summer of 2014. The short intervals (4 h) between balloon flights enabled the diurnal variation in the vertical profile of charge within the boundary layer to be examined in detail, with much smaller charges (up to 20 pC m- 3) observed during stable night time periods than during the day. Following sunrise, the evolution of the charge profile was complex, demonstrating charged ultrafine aerosol, lofted upwards by daytime convection. This produced charge up to 92 pC m- 3 up to 500 m above the surface. The diurnal variation in the integrated column of charge above the site tracked closely with the diurnal variation in near surface charge as derived from a nearby electric field sensor, confirming the importance of the link between surface charge generation processes and aloft. The local aerosol vertical profiles were estimated using backscatter measurements from a collocated ceilometer. These were utilised in a simple model to calculate the charge expected due to vertical conduction current flow in the global electric circuit through aerosol layers. The analysis presented here demonstrates that charge can provide detailed information about boundary layer transport, particularly in regard to the ultrafine aerosol structure, that conventional thermodynamic and ceilometer measurements do not.

Genetic profiling of Mycobacterium bovis strains from slaughtered cattle in Eritrea

PubMed Central

Hlokwe, Tiny; Rutten, Victor P. M. G.; Allepuz, Alberto; Cadmus, Simeon; Muwonge, Adrian; Robbe-Austerman, Suelee; Michel, Anita L.

2018-01-01

Mycobacterium bovis (M.bovis) is the main causative agent for bovine tuberculosis (BTB) and can also be the cause of zoonotic tuberculosis in humans. In view of its zoonotic nature, slaughterhouse surveillance, potentially resulting in total or partial condemnation of the carcasses and organs, is conducted routinely. Spoligotyping, VNTR profiling, and whole genome sequencing (WGS) of M. bovis isolated from tissues with tuberculosis-like lesions collected from 14 cattle at Eritrea’s largest slaughterhouse in the capital Asmara, were conducted.The 14 M. bovis isolates were classified into three different spoligotype patterns (SB0120, SB0134 and SB0948) and six VNTR profiles. WGS results matched those of the conventional genotyping methods and further discriminated the six VNTR profiles into 14 strains. Furthermore, phylogenetic analysis of the M. bovis isolates suggests two independent introductions of BTB into Eritrea possibly evolving from a common ancestral strain in Europe.This molecular study revealed the most important strains of M. bovis in Eritrea and their (dis)similarities with the strains generally present in East Africa and Europe, as well as potential routes of introduction of M. bovis. Though the sample size is small, the current study provides important information as well as platform for future in-depth molecular studies on isolates from both the dairy and the traditional livestock sectors in Eritrea and the region. This study provides information onthe origin of some of the M. bovis strains in Eritrea, its genetic diversity, evolution and patterns of spread between dairy herds. Such information is essential in the development and implementation of future BTB control strategy for Eritrea. PMID:29664901

Tractable flux-driven temperature, density, and rotation profile evolution with the quasilinear gyrokinetic transport model QuaLiKiz

NASA Astrophysics Data System (ADS)

Citrin, J.; Bourdelle, C.; Casson, F. J.; Angioni, C.; Bonanomi, N.; Camenen, Y.; Garbet, X.; Garzotti, L.; Görler, T.; Gürcan, O.; Koechl, F.; Imbeaux, F.; Linder, O.; van de Plassche, K.; Strand, P.; Szepesi, G.; Contributors, JET

2017-12-01

Quasilinear turbulent transport models are a successful tool for prediction of core tokamak plasma profiles in many regimes. Their success hinges on the reproduction of local nonlinear gyrokinetic fluxes. We focus on significant progress in the quasilinear gyrokinetic transport model QuaLiKiz (Bourdelle et al 2016 Plasma Phys. Control. Fusion 58 014036), which employs an approximated solution of the mode structures to significantly speed up computation time compared to full linear gyrokinetic solvers. Optimisation of the dispersion relation solution algorithm within integrated modelling applications leads to flux calculations × {10}6-7 faster than local nonlinear simulations. This allows tractable simulation of flux-driven dynamic profile evolution including all transport channels: ion and electron heat, main particles, impurities, and momentum. Furthermore, QuaLiKiz now includes the impact of rotation and temperature anisotropy induced poloidal asymmetry on heavy impurity transport, important for W-transport applications. Application within the JETTO integrated modelling code results in 1 s of JET plasma simulation within 10 h using 10 CPUs. Simultaneous predictions of core density, temperature, and toroidal rotation profiles for both JET hybrid and baseline experiments are presented, covering both ion and electron turbulence scales. The simulations are successfully compared to measured profiles, with agreement mostly in the 5%-25% range according to standard figures of merit. QuaLiKiz is now open source and available at www.qualikiz.com.

Regarding the optimization of O1-mode ECRH and the feasibility of EBW startup on NSTX-U

NASA Astrophysics Data System (ADS)

Lopez, N. A.; Poli, F. M.

2018-06-01

Recently published scenarios for fully non-inductive startup and operation on the National Spherical Torus eXperiment Upgrade (NSTX-U) (Menard et al 2012 Nucl. Fusion 52 083015) show Electron Cyclotron Resonance Heating (ECRH) as an important component in preparing a target plasma for efficient High Harmonic Fast Wave and Neutral Beam heating. The modeling of the propagation and absorption of EC waves in the evolving plasma is required to define the most effective window of operation, and to optimize the launcher geometry for maximal heating and current drive during this window. Here, we extend a previous optimization of O1-mode ECRH on NSTX-U to account for the full time-dependent performance of the ECRH using simulations performed with TRANSP. We find that the evolution of the density profile has a prominent role in the optimization by defining the time window of operation, which in certain cases may be a more important metric to compare launcher performance than the average power absorption. This feature cannot be captured by analysis on static profiles, and should be accounted for when optimizing ECRH on any device that operates near the cutoff density. Additionally, the utility of the electron Bernstein wave (EBW) in driving current and generating closed flux surfaces in the early startup phase has been demonstrated on a number of devices. Using standalone GENRAY simulations, we find that efficient EBW current drive is possible on NSTX-U if the injection angle is shifted below the midplane and aimed towards the top half of the vacuum vessel. However, collisional damping of the EBW is projected to be significant, in some cases accounting for up to 97% of the absorbed EBW power.

Regarding the optimization of O1-mode ECRH and the feasibility of EBW startup on NSTX-U

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lopez, Nicolas; Poli, Francesca M.

Recently published scenarios for fully non-inductive startup and operation on the National Spherical Torus eXperiment Upgrade (NSTX-U) [Menard J et al 2012 Nucl. Fusion 52 083015] show Electron Cyclotron Resonance Heating (ECRH) as an important component in preparing a target plasma for efficient High Harmonic Fast Wave and Neutral Beam heating. The modelling of the propagation and absorption of EC waves in the evolving plasma is required to define the most effective window of operation, and to optimize the launcher geometry for maximal heating and current drive during this window. Here in this paper, we extend a previous optimization ofmore » O1-mode ECRH on NSTX-U to account for the full time-dependent performance of the ECRH using simulations performed with TRANSP. We find that the evolution of the density profile has a prominent role in the optimization by defining the time window of operation, which in certain cases may be a more important metric to compare launcher performance than the average power absorption. This feature cannot be captured by analysis on static profiles, and should be accounted for when optimizing ECRH on any device that operates near the cutoff density. Additionally, the utility of the electron Bernstein wave (EBW) in driving current and generating closed flux surfaces in the early startup phase has been demonstrated on a number of devices. Using standalone GENRAY simulations, we find that efficient EBW current drive is possible on NSTX-U if the injection angle is shifted below the midplane and aimed towards the top half of the vacuum vessel. However, collisional damping of the EBW is projected to be significant, in some cases accounting for up to 97\\% of the absorbed EBW power.« less

Regarding the optimization of O1-mode ECRH and the feasibility of EBW startup on NSTX-U

DOE PAGES

Lopez, Nicolas; Poli, Francesca M.

2018-03-29

Recently published scenarios for fully non-inductive startup and operation on the National Spherical Torus eXperiment Upgrade (NSTX-U) [Menard J et al 2012 Nucl. Fusion 52 083015] show Electron Cyclotron Resonance Heating (ECRH) as an important component in preparing a target plasma for efficient High Harmonic Fast Wave and Neutral Beam heating. The modelling of the propagation and absorption of EC waves in the evolving plasma is required to define the most effective window of operation, and to optimize the launcher geometry for maximal heating and current drive during this window. Here in this paper, we extend a previous optimization ofmore » O1-mode ECRH on NSTX-U to account for the full time-dependent performance of the ECRH using simulations performed with TRANSP. We find that the evolution of the density profile has a prominent role in the optimization by defining the time window of operation, which in certain cases may be a more important metric to compare launcher performance than the average power absorption. This feature cannot be captured by analysis on static profiles, and should be accounted for when optimizing ECRH on any device that operates near the cutoff density. Additionally, the utility of the electron Bernstein wave (EBW) in driving current and generating closed flux surfaces in the early startup phase has been demonstrated on a number of devices. Using standalone GENRAY simulations, we find that efficient EBW current drive is possible on NSTX-U if the injection angle is shifted below the midplane and aimed towards the top half of the vacuum vessel. However, collisional damping of the EBW is projected to be significant, in some cases accounting for up to 97\\% of the absorbed EBW power.« less

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.

PubMed

Noda-García, Lianet; Juárez-Vázquez, Ana L; Ávila-Arcos, María C; Verduzco-Castro, Ernesto A; Montero-Morán, Gabriela; Gaytán, Paul; Carrillo-Tripp, Mauricio; Barona-Gómez, Francisco

2015-06-10

Current sequence-based approaches to identify enzyme functional shifts, such as enzyme promiscuity, have proven to be highly dependent on a priori functional knowledge, hampering our ability to reconstruct evolutionary history behind these mechanisms. Hidden Markov Model (HMM) profiles, broadly used to classify enzyme families, can be useful to distinguish between closely related enzyme families with different specificities. The (βα)8-isomerase HisA/PriA enzyme family, involved in L-histidine (HisA, mono-substrate) biosynthesis in most bacteria and plants, but also in L-tryptophan (HisA/TrpF or PriA, dual-substrate) biosynthesis in most Actinobacteria, has been used as model system to explore evolutionary hypotheses and therefore has a considerable amount of evolutionary, functional and structural knowledge available. We searched for functional evolutionary intermediates between the HisA and PriA enzyme families in order to understand the functional divergence between these families. We constructed a HMM profile that correctly classifies sequences of unknown function into the HisA and PriA enzyme sub-families. Using this HMM profile, we mined a large metagenome to identify plausible evolutionary intermediate sequences between HisA and PriA. These sequences were used to perform phylogenetic reconstructions and to identify functionally conserved amino acids. Biochemical characterization of one selected enzyme (CAM1) with a mutation within the functionally essential N-terminus phosphate-binding site, namely, an alanine instead of a glycine in HisA or a serine in PriA, showed that this evolutionary intermediate has dual-substrate specificity. Moreover, site-directed mutagenesis of this alanine residue, either backwards into a glycine or forward into a serine, revealed the robustness of this enzyme. None of these mutations, presumably upon functionally essential amino acids, significantly abolished its enzyme activities. A truncated version of this enzyme (CAM2) predicted to adopt a (βα)6-fold, and thus entirely lacking a C-terminus phosphate-binding site, was identified and shown to have HisA activity. As expected, reconstruction of the evolution of PriA from HisA with HMM profiles suggest that functional shifts involve mutations in evolutionarily intermediate enzymes of otherwise functionally essential residues or motifs. These results are in agreement with a link between promiscuous enzymes and intragenic epistasis. HMM provides a convenient approach for gaining insights into these evolutionary processes.

Criteria and tools for determining drainage divide stability

NASA Astrophysics Data System (ADS)

Forte, Adam M.; Whipple, Kelin X.

2018-07-01

Watersheds are the fundamental organizing units in landscapes and thus the controls on drainage divide location and mobility are an essential facet of landscape evolution. Additionally, many common topographic analyses fundamentally assume that river network topology and divide locations are largely static, allowing channel profile form to be interpreted in terms of spatio-temporal patterns of rock uplift rate relative to base level, climate, or rock properties. Recently however, it has been suggested that drainage divides are more mobile than previously thought and that divide mobility, and resulting changes in drainage area, could potentially confound interpretations of river profiles. Ultimately, reliable metrics are needed to diagnose the mobility of divides as part of routine landscape analyses. One such recently proposed metric is cross-divide contrasts in χ, a proxy for steady-state channel elevation, but cross-divide contrasts in a number of topographic metrics show promise. Here we use a series of landscape evolution simulations in which we induce divide mobility under different conditions to test the utility of a suite of topographic metrics of divide mobility and for comparison with natural examples in the eastern Greater Caucasus Mountains, the Kars Volcanic Plateau, and the western San Bernadino Mountains. Specifically, we test cross-divide contrasts in mean gradient, mean local relief, channel bed elevation, and χ all measured at, or averaged upstream of, a reference drainage area. Our results highlight that cross-divide contrasts in χ only faithfully reflect current divide mobility when uplift, rock erodibility, climate, and catchment outlet elevation are uniform across both river networks on either side of the divide, otherwise a χ-anomaly only indicates a possible future divide instability. The other metrics appear to be more reliable representations of current divide motion, but in natural landscapes, only cross-divide contrasts in mean gradient and local relief appear to consistently provide useful information. Multiple divide metrics should be considered simultaneously and across-divide values of all metrics examined quantitatively as visual assessment is not sufficiently reliable in many cases. We provide a series of Matlab tools built using TopoToolbox to facilitate routine analysis.

Stirring by deep cyclones and the evolution of Denmark strait overflow water observed at line W

NASA Astrophysics Data System (ADS)

Andres, M.; Toole, J. M.; Torres, D. J.; Smethie, W. M.; Joyce, T. M.; Curry, R. G.

2016-03-01

Shipboard velocity and water property data from 18 transects across the North Atlantic Deep Western Boundary Current (DWBC) near 40 °N are examined to study the evolution of the Denmark Strait Overflow Water (DSOW) component of the DWBC and mixing between DSOW and the interior. The examined transects along Line W - which stretches from the continental shelf south of New England to Bermuda - were made between 1994 and 2014. The shipboard data comprise measurements at regular stations of velocity from lowered acoustic Doppler current profilers, CTD profiles and trace gas chlorofluorocarbon (CFC) concentrations from bottle samples at discrete depths. Comparison of the Line W velocity sections with concurrent sea surface height maps from satellite altimetry indicates that large cyclones in the deep ocean accompany intermittent quasi-stationary meander troughs in the Gulf Stream path at Line W. A composite of 5 velocity sections along Line W suggests that a typical cyclone reaches swirl speeds of greater than 30 cm s-1 at 3400-m depth and has a radius (distance between the center and the maximum velocity) of 75 km. Tracer data suggest that these cyclones affect not only the deep velocity structure along Line W, but also provide a mechanism for water exchange between the DWBC's DSOW and the interior. Vigorous exchange is corroborated by a mismatch in the CFC-11:CFC-12 and CFC-113:CFC-12 ratio ages calculated for DSOW at Line W. During the most recent 5-year period (2010-2014), a decrease in DSOW density has been driven by warming (increasing by almost 0.1 °C) as salinity has increased only slightly (by 0.003, which is close to the 0.002 uncertainty of the measurements). The abyssal ocean offshore of the DWBC and Gulf Stream and deeper than 3000-m depth has freshened at a rate of 6×10-4 yr-1 since at least 2003. Density here remains nearly unchanged over this period, due to temperature compensation, though a linear cooling trend in the abyssal ocean (to compensate the freshening) is not statistically significant.

From SYNOP to AMOC: Stirring by deep cyclones and the evolution of Denmark Strait Overflow Water observed at Line W

NASA Astrophysics Data System (ADS)

Andres, M.; Toole, J. M.; Torres, D. J.; Smethie, W. M., Jr.; Joyce, T. M.; Curry, R. G.

2016-02-01

Shipboard velocity and property data from 18 transects across the North Atlantic Deep Western Boundary Current (DWBC) near 40˚N are analyzed to study the evolution of the Denmark Strait Overflow Water (DSOW) component of the DWBC and its mixing with the interior. The transects were made between 1994 and 2014 and lie along Line W, which reaches from the continental shelf south of New England to Bermuda. Measurements comprise velocity from lowered acoustic Doppler current profilers (LADCPs), CTD profiles, and trace gas chlorofluorocarbon (CFC) concentrations from bottle samples at discrete depths at 26 regular stations or a subset of these stations. In each transect, DSOW exhibits a distinct CFC concentration maximum in the abyssal ocean (> 3000 m depth) along the sloped western boundary. Sea surface height (SSH) maps from satellite altimetry indicate that quasi-stationary meander troughs of the Gulf Stream path in the upper ocean were present at Line W during 5 of the 18 sections. For these 5 sections, the LADCP velocity sections suggest the upper ocean trough is accompanied by a large cyclone in the deep ocean in the DSOW density layer. The occurrence of deep cyclones in conjunction with Gulf Stream troughs as inferred from the LADCP sections along Line W is consistent with previous observations (from 1988 to 1990) in the region from a moored array in the Synoptic Ocean Prediction (SYNOP) experiment. The SYNOP array suggested deep cyclones are present here about 35% of the time. The composite velocity section produced from the 5 Line W transects sampling through a Gulf Stream trough suggests that a typical cyclone reaches swirl speeds of greater than 30 cm/s at 3400 m depth and has a radius (distance between the center and the maximum velocity) of 75 km. The tracer data suggest that these cyclones affect not only the deep velocity structure along Line W, but also provide a mechanism for water exchange between the DWBC and the interior.

Imprints of explosion conditions on late-time spectra of type Ia supernovae

NASA Astrophysics Data System (ADS)

Diamond, Tiara R.

Type Ia supernovae (SNe Ia) play a vital role in the discrimination of different cosmological models. These events have been shown to be standardizable based on properties of their light curves during the early-time photospheric phase. However, the distribution of types of progenitor system, the explosion trigger, and the physics of the explosion are still an active topic of discussion. The details of the progenitors and explosion may provide insight into the variation seen in Type Ia supernova light curves and spectra, and therefore, allow for additional methods of standardization among the group. Late-time near-infrared spectral observations for SNe Ia show numerous strong emission features of forbidden line transitions of cobalt and iron, tracing the central distribution of iron-group burning products. As the spectrum ages, the cobalt features fade as expected from the decay of 56Co to 56Fe. This work will show that the strong and isolated [Fe II] emission line at 1.644 mum provides a unique tool to analyze near-infrared spectra of SNe Ia. Several new methods of analysis will be demonstrated to determine some of the initial conditions of the system. The initial central density, rhoc, and the extent of mixing in the central regions of the explosion have signatures in the line profiles of late-time spectra. An embedded magnetic field, B, of the white dwarf can be determined using the evolution of the lines profiles. Currently magnetic field effects are not included in the hydrodynamics and radiation transport of simulations of SNe Ia. Normalization of spectra to the 1.644 mum line allows separation of features produced by stable versus unstable isotopes of iron group elements. Implications for potential progenitor systems, explosion mechanisms, and the origins and morphology of magnetic fields in SNe Ia, in addition to limitations of the method, are discussed. Observations of the late-time near-infrared emission spectrum at multiple epochs allow for the first ever analysis of the evolution of the 1.644 mum line profile for a SNe Ia. These late-time data are really pushing the observational limits of current ground-based telescopes in terms of a dim target and low signal-to-noise. The new analysis method presented in this work is used on observations of SN 2005df to constrain the initial conditions of those systems. Finally, the details and limitations of the method are presented for use with SN 2014J and future time-series observations, which will dramatically increase in number and signal-to-noise with the next-generation of telescopes and missions.

Bathymetric Changes Shaped by Longshore Currents on a Natural Beach

NASA Astrophysics Data System (ADS)

Reilly, W. L.; Slinn, D.; Plant, N.

2004-12-01

The goal of the project is to simulate beach morphology on time scales of hours to days. Our approach is to develop finite difference solutions from a coupled modeling system consisting of existing nearshore circulation, wave, and sediment flux models. We initialize the model with bathymetry from a dense data set north of the pier at the Field Research Facility (FRF) in Duck, NC. We integrate the model system forward in time and compare the results of the hind-cast of the beach evolution with the field observations. The model domain extends 1000 meters in the alongshore direction and 500 meters in the cross-shore direction with 5 meter grid spacing. The bathymetry is interpolated and filtered from CRAB transects. A second-degree exponential smoothing method is used to return the cross-shore beach profile near the edges of the modeled domain back to the mean alongshore profile, because the circulation model implements periodic boundary conditions in the alongshore direction. The offshore wave height and direction are taken from the 8-meter bipod at the FRF and input to the wave-model, SWAN (Spectral Wave Nearshore), with a Gaussian-shaped frequency spectrum and a directional spreading of 5 degrees. A constant depth induced wave breaking parameter of 0.73 is used. The resulting calculated wave induced force per unit surface area (gradient of the radiation stress) output from SWAN is used to drive the currents in the circulation model. The circulation model is based on the free-surface non-linear shallow water equations and uses the fourth order compact scheme to calculate spatial derivatives and a third order Adams-Bashforth time discretization scheme. Free slip, symmetry boundary conditions are applied at both the shoreline and offshore boundaries. The time averaged sediment flux is calculated at each location after one hour of circulation. The sediment flux model is based on the approach of Bagnold and includes approximations for both bed-load and suspended load. The bathymetry is then updated by computing the divergence of the time averaged sediment fluxes. The process is then repeated using the updated bathymetry in both SWAN and the circulation model. The cycle continues for a simulation of 10 hours. The results of bathymetric change vary for different time-dependent wave conditions and initial bathymetric profiles. Typical results indicate that for wave heights on the order of one meter, shoreline advancement and sandbar evolution is observed on the order of tens of centimeters.

Photochemistry of Pluto's Atmosphere

NASA Technical Reports Server (NTRS)

Krasnopolsky, Vladimir A.

1999-01-01

This work include studies of two problems: (1) Modeling thermal balance, structure. and escape processes in Pluto's upper atmosphere. This study has been completed in full. A new method, of analytic solution for the equation of hydrodynamic flow from in atmosphere been developed. It was found that the ultraviolet absorption by methane which was previously ignored is even more important in Pluto's thermal balance than the extreme ultraviolet absorption by nitrogen. Two basic models of the lower atmosphere have been suggested, with a tropopause and a planetary surface at the bottom of the stellar occultation lightcurve, respectively, Vertical profiles, of temperature, density, gas velocity, and the CH4 mixing ratio have been calculated for these two models at low, mean, and high solar activity (six models). We prove that Pluto' " s atmosphere is restricted to 3060-4500 km, which makes possible a close flyby of future spacecraft. Implication for Pluto's evolution have also been discussed. and (2) Modeling of Pluto's photochemistry. Based on the results of (1), we have made some changes in the basic continuity equation and in the boundary conditions which reflect a unique can of hydrodynamic escape and therefore have not been used in modeling of other planetary atmospheres. We model photochemistry of 44 neutral and 23 ion species. This work required solution of a set of 67 second-order nonlinear ordinary differential equations. Two models have been developed. Each model consists of the vertical profiles for 67 species, their escape and precipitation rates. These models predict the chemical structure and basic chemical processes in the current atmosphere and possible implication of these processes for evolution. This study has also been completed in full.

Evolution of density and velocity profiles of dark matter and dark energy in spherical voids

NASA Astrophysics Data System (ADS)

Novosyadlyj, Bohdan; Tsizh, Maksym; Kulinich, Yurij

2017-02-01

We analyse the evolution of cosmological perturbations which leads to the formation of large isolated voids in the Universe. We assume that initial perturbations are spherical and all components of the Universe (radiation, matter and dark energy) are continuous media with ideal fluid energy-momentum tensors, which interact only gravitationally. Equations of the evolution of perturbations for every component in the comoving to cosmological background reference frame are obtained from equations of energy and momentum conservation and Einstein's ones and are integrated numerically. Initial conditions are set at the early stage of evolution in the radiation-dominated epoch, when the scale of perturbation is much larger than the particle horizon. Results show how the profiles of density and velocity of matter and dark energy are formed and how they depend on parameters of dark energy and initial conditions. In particular, it is shown that final matter density and velocity amplitudes change within range ˜4-7 per cent when the value of equation-of-state parameter of dark energy w vary in the range from -0.8 to -1.2, and change within ˜1 per cent only when the value of effective sound speed of dark energy vary over all allowable range of its values.

Temperature dependent evolution of wrinkled single-crystal silicon ribbons on shape memory polymers.

PubMed

Wang, Yu; Yu, Kai; Qi, H Jerry; Xiao, Jianliang

2017-10-25

Shape memory polymers (SMPs) can remember two or more distinct shapes, and thus can have a lot of potential applications. This paper presents combined experimental and theoretical studies on the wrinkling of single-crystal Si ribbons on SMPs and the temperature dependent evolution. Using the shape memory effect of heat responsive SMPs, this study provides a method to build wavy forms of single-crystal silicon thin films on top of SMP substrates. Silicon ribbons obtained from a Si-on-insulator (SOI) wafer are released and transferred onto the surface of programmed SMPs. Then such bilayer systems are recovered at different temperatures, yielding well-defined, wavy profiles of Si ribbons. The wavy profiles are shown to evolve with time, and the evolution behavior strongly depends on the recovery temperature. At relatively low recovery temperatures, both wrinkle wavelength and amplitude increase with time as evolution progresses. Finite element analysis (FEA) accounting for the thermomechanical behavior of SMPs is conducted to study the wrinkling of Si ribbons on SMPs, which shows good agreement with experiment. Merging of wrinkles is observed in FEA, which could explain the increase of wrinkle wavelength observed in the experiment. This study can have important implications for smart stretchable electronics, wrinkling mechanics, stimuli-responsive surface engineering, and advanced manufacturing.

Wind-tunnel modelling of the tip-speed ratio influence on the wake evolution

NASA Astrophysics Data System (ADS)

Stein, Victor P.; Kaltenbach, Hans-Jakob

2016-09-01

Wind-tunnel measurements on the near-wake evolution of a three bladed horizontal axis wind turbine model (HAWT) in the scale 1:O(350) operating in uniform flow conditions and within a turbulent boundary layer at different tip speed ratios are presented. Operational conditions are chosen to exclude Reynolds number effects regarding the turbulent boundary layer as well as the rotor performance. Triple-wire anemometry is used to measure all three velocity components in the mid-vertical and mid-horizontal plane, covering the range from the near- to the far-wake region. In order to analyse wake properties systematically, power and thrust coefficients of the turbine were measured additionally. It is confirmed that realistic modelling of the wake evolution is not possible in a low-turbulence uniform approach flow. Profiles of mean velocity and turbulence intensity exhibit large deviations between the low-turbulence uniform flow and the turbulent boundary layer, especially in the far-wake region. For nearly constant thrust coefficients differences in the evolution of the near-wake can be identified for tip speed ratios in the range from 6.5 to 10.5. It is shown that with increasing downstream distances mean velocity profiles become indistinguishable whereas for turbulence statistics a subtle dependency on the tip speed ratio is still noticeable in the far-wake region.

Calculating the spatio-temporal variability of bedrock exposure on seasonal hydrograph timescales as a prerequisite to modeling bedrock river evolution

NASA Astrophysics Data System (ADS)

Hurst, A. A.; Anderson, R. S.; Tucker, G. E.

2017-12-01

Erosion of bedrock river channels exerts significant control on landscape evolution because it communicates climatic and tectonic signals across a landscape by setting the lower erosional boundaries for hillslopes. Hillslope erosion delivers sediment to the channels, which then either store or transport the sediment. At times of high storage, access to the bedrock floor of the channel is limited, inhibiting bedrock erosion. This affects the timescale of channel response to imposed base-level lowering, which in turn affects hillslope erosion. Because occasional exposure of the bedrock bed is a minimum prerequisite for bedrock erosion, we seek to understand the evolution of sediment cover, or scour history, with sufficient resolution to answer when and where the bed is exposed. The scour history at a site is governed by grain size, bed and channel morphology, sediment concentration in the water, and seasonal flow conditions (hydrograph). The transient nature of bedrock exposure during high-flow events implies that short-term sediment cover dynamics are important for predicting long-term bedrock incision rates. Models of channel profile evolution, or of landscape evolution, generally ignore evolution of sediment cover on the hydrograph timescale. To develop insight into the necessary and sufficient conditions for bedrock exposure followed by reburial, we have developed a 1-D model of the evolution of alluvial cover thickness in a long channel profile in response to a seasonal hydrograph. This model tracks erosion, deposition, and the concentration of sediment in the water column separately, and generates histories of scour and fill over the course of the hydrograph. We compare the model's predictions with net-scour measurements in tributaries of the Grand Canyon and with scour-chain and accelerometer measurements in the Cedar River, Washington. By addressing alluvial scour on short timescales, we acknowledge the processes required to allow bedrock incision and landscape evolution over longer timescales.

Practices and Perspectives of College Instructors on Addressing Religious Beliefs When Teaching Evolution

ERIC Educational Resources Information Center

Barnes, M. Elizabeth; Brownell, Sara E.

2016-01-01

Evolution is a core concept of biology, and yet many college biology students do not accept evolution because of their religious beliefs. However, we do not currently know how instructors perceive their role in helping students accept evolution or how they address the perceived conflict between religion and evolution when they teach evolution.…

High-resolution geophysical data from the Inner Continental Shelf: South of Martha's Vineyard and north of Nantucket, Massachusetts

USGS Publications Warehouse

Ackerman, Seth D.; Brothers, Laura L.; Foster, David S.; Andrews, Brian D.; Baldwin, Wayne E.; Schwab, William C.

2016-10-28

The U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management have cooperated to map approximately 185 square kilometers of the inner continental shelf south of Martha’s Vineyard and north of Nantucket, Massachusetts. This report contains geophysical data collected by the U.S. Geological Survey during a survey in 2013. The geophysical data include (1) swath bathymetry collected by using interferometric sonar, (2) acoustic backscatter from the interferometric sonar, and (3) seismic-reflection profiles from a chirp subbottom profiler. These spatial data support research on the Quaternary evolution of coastal Massachusetts, the influence of sea-level change and sediment supply on coastal evolution, and efforts to understand the type, distribution, and quality of subtidal marine habitats in the coastal ocean of Massachusetts.

Evolution of the magnetic field structure of the Crab pulsar.

PubMed

Lyne, Andrew; Graham-Smith, Francis; Weltevrede, Patrick; Jordan, Christine; Stappers, Ben; Bassa, Cees; Kramer, Michael

2013-11-01

Pulsars are highly magnetized rotating neutron stars and are well known for the stability of their signature pulse shapes, allowing high-precision studies of their rotation. However, during the past 22 years, the radio pulse profile of the Crab pulsar has shown a steady increase in the separation of the main pulse and interpulse components at 0.62° ± 0.03° per century. There are also secular changes in the relative strengths of several components of the profile. The changing component separation indicates that the axis of the dipolar magnetic field, embedded in the neutron star, is moving toward the stellar equator. This evolution of the magnetic field could explain why the pulsar does not spin down as expected from simple braking by a rotating dipolar magnetic field.

First measurement of time evolution of electron temperature profiles with Nd:YAG Thomson scattering system on Heliotron J

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kenmochi, N., E-mail: kemmchi.naoki.62r@st.kyoto-u.ac.jp; Tei, S.; Zang, L.

2014-11-15

A Nd:YAG Thomson scattering system has been developed for Heliotron J. The system consists of two 550 mJ 50 Hz lasers, large collection optics, and 25 radial channel (∼1 cm spatial resolution) interference polychromators. This measurement system achieves a S/N ratio of ∼50 for low-density plasma (n{sub e} ∼ 0.5 × 10{sup 19} m{sup −3}). A time evolution of electron temperature profiles was measured with this system for a high-intensity gas-puff (HIGP) fueling neutral-beam-injection plasma. The peripheral temperature of the higher-density phase after HIGP recovers to the low-density pre-HIGP level, suggesting that improving particle transport in the HIGP plasma maymore » be possible.« less

Science synergism study for EOS on evolution of desert surfaces

NASA Technical Reports Server (NTRS)

Farr, Tom G.

1987-01-01

The effectiveness of EOS data as a basis for the study of desert surfaces' evolution is presently evaluated for both long and short term geomorphic evolution. Attention is given to the usefulness of such sensor systems planned for EOS as MODIS for regional vegetation distribution/variability monitoring, HIRIS for visible-near IR observations, TIMS for lithological identification, HMMR and SSMI for soil characteristics, LASA for atmospheric profiles, SAR for surface roughness, ALT for two-dimensional topography, ACR for the calibration of imaging sensors, and ERBE for climate modeling and regional surface albedo variation determinations.

Seaglider surveys at Ocean Station Papa: Circulation and water mass properties in a meander of the North Pacific Current

NASA Astrophysics Data System (ADS)

Pelland, Noel A.; Eriksen, Charles C.; Cronin, Meghan F.

2016-09-01

A Seaglider autonomous underwater vehicle augmented the Ocean Station Papa (OSP; 50°N, 145°W) surface mooring, measuring spatial structure on scales relevant to the monthly evolution of the moored time series. During each of three missions from June 2008 to January 2010, a Seaglider made biweekly 50 km × 50 km surveys in a bowtie-shaped survey track. Horizontal temperature and salinity gradients measured by these surveys were an order of magnitude stronger than climatological values and sometimes of opposite sign. Geostrophically inferred circulation was corroborated by moored acoustic Doppler current profiler measurements and AVISO satellite altimetry estimates of surface currents, confirming that glider surveys accurately resolved monthly scale mesoscale spatial structure. In contrast to climatological North Pacific Current circulation, upper-ocean flow was modestly northward during the first half of the 18 month survey period, and weakly westward during its latter half, with Rossby number O>(0.01>). This change in circulation coincided with a shift from cool and fresh to warm, saline, oxygen-rich water in the upper-ocean halocline, and an increase in vertical fine structure there and in the lower pycnocline. The anomalous flow and abrupt water mass transition were due to the slow growth of an anticyclonic meander within the North Pacific Current with radius comparable to the scale of the survey pattern, originating to the southeast of OSP.

Sawtooth control in fusion plasmas

NASA Astrophysics Data System (ADS)

Graves, J. P.; Angioni, C.; Budny, R. V.; Buttery, R. J.; Coda, S.; Eriksson, L.-G.; Gimblett, C. G.; Goodman, T. P.; Hastie, R. J.; Henderson, M. A.; Koslowski, H. R.; Mantsinen, M. J.; Martynov, An; Mayoral, M.-L.; Mück, A.; Nave, M. F. F.; Sauter, O.; Westerhof, E.; Contributors, JET–EFDA

2005-12-01

Clear observations of early triggering of neo-classical tearing modes by sawteeth with long quiescent periods have motivated recent efforts to control, and in particular destabilize, sawteeth. One successful approach explored in TCV utilizes electron cyclotron heating in order to locally increase the current penetration time in the core. The latter is also achieved in various machines by depositing electron cyclotron current drive or ion cyclotron current drive close to the q = 1 rational surface. Crucially, localized current drive also succeeds in destabilizing sawteeth which are otherwise stabilized by a co-existing population of energetic trapped ions in the core. In addition, a recent reversed toroidal field campaign at JET demonstrates that counter-neutral beam injection (NBI) results in shorter sawtooth periods than in the Ohmic regime. The clear dependence of the sawtooth period on the NBI heating power and the direction of injection also manifests itself in terms of the toroidal plasma rotation, which consequently requires consideration in the theoretical interpretation of the experiments. Another feature of NBI, expected to be especially evident in the negative ion based neutral beam injection (NNBI) heating planned for ITER, is the parallel velocity asymmetry of the fast ion population. It is predicted that a finite orbit effect of asymmetrically distributed circulating ions could strongly modify sawtooth stability. Furthermore, NNBI driven current with non-monotonic profile could significantly slow down the evolution of the safety factor in the core, thereby delaying sawteeth.

WRF simulation of downslope wind events in coastal Santa Barbara County

NASA Astrophysics Data System (ADS)

Cannon, Forest; Carvalho, Leila M. V.; Jones, Charles; Hall, Todd; Gomberg, David; Dumas, John; Jackson, Mark

2017-07-01

The National Weather Service (NWS) considers frequent gusty downslope winds, accompanied by rapid warming and decreased relative humidity, among the most significant weather events affecting southern California coastal areas in the vicinity of Santa Barbara (SB). These extreme conditions, commonly known as "sundowners", have affected the evolution of all major wildfires that impacted SB in recent years. Sundowners greatly increase fire, aviation and maritime navigation hazards and are thus a priority for regional forecasting. Currently, the NWS employs the Weather Research Forecasting (WRF) model at 2 km resolution to complement forecasts at regional-to-local scales. However, no systematic study has been performed to evaluate the skill of WRF in simulating sundowners. This research presents a case study of an 11-day period in spring 2004 during which sundowner events were observed on multiple nights. We perform sensitivity experiments for WRF using available observations for validation and demonstrate that WRF is skillful in representing the general mesoscale structure of these events, though important shortcomings exist. Furthermore, we discuss the generation and evolution of sundowners during the case study using the best performing configuration, and compare these results to hindcasts for two major SB fires. Unique, but similar, profiles of wind and stability are observed over SB between case studies despite considerable differences in large-scale circulation, indicating that common conditions may exist across all events. These findings aid in understanding the evolution of sundowner events and are potentially valuable for event prediction.

Outer edges of debris discs. How sharp is sharp?

NASA Astrophysics Data System (ADS)

Thébault, P.; Wu, Y.

2008-04-01

Context: Rings or annulus-like features have been observed in most imaged debris discs. Outside the main ring, while some systems (e.g., β Pictoris and AU Mic) exhibit smooth surface brightness profiles (SB) that fall off roughly as ~r-3.5, others (e.g. HR 4796A and HD 139664) display large drops in luminosity at the ring's outer edge and steeper radial luminosity profiles. Aims: We seek to understand this diversity of outer edge profiles under the “natural” collisional evolution of the system, without invoking external agents such as planets or gas. Methods: We use a multi-annulus statistical code to follow the evolution of a collisional population, ranging in size from dust grains to planetesimals and initially confined within a belt (the “birth ring”). The crucial effect of radiation pressure on the dynamics and spatial distribution of the smallest grains is taken into account. We explore the dependence of the resulting disc surface brightness profile on various parameters. Results: The disc typically evolves toward a “standard” steady state, where the radial surface brightness profile smoothly decreases with radius as r-3.5 outside the birth ring. This confirms and extends the semi-analytical study of Strubbe & Chiang (2006, ApJ, 648, 652) and provides a firm basis for interpreting observed discs. Deviations from this typical profile, in the form of a sharp outer edge and a steeper fall-off, occur for two “extreme” cases: 1) when the birth ring is so massive that it becomes radially optically thick for the smallest grains. However, the required disc mass is probably too high here to be realistic; 2) when the dynamical excitation of the dust-producing planetesimals is so low (< e> and < i> ≤ 0.01) that the smallest grains, which otherwise dominate the optical depth of the system, are preferentially depleted. This low-excitation case, although possibly not generic, cannot be ruled out by observations for most systems, . Conclusions: Our “standard” profile provides a satisfactory explanation for a large group of debris discs that show smooth outer edges and SB ∝ r-3.5. Systems with sharper outer edges, barring other confining agents, could still be explained by “natural” collisional evolution if their dynamical excitation is very low. We show that such a dynamically-cold case provides a satisfactory fit to the specific HR4796A ring.

Evolution of CO2 in lakes Monoun and Nyos, Cameroon, before and during controlled degassing

USGS Publications Warehouse

Kusakabe, M.; Ohba, T.; Issa,; Yoshida, Y.; Satake, H.; Ohizumi, T.; Evans, William C.; Tanyileke, G.; Kling, G.W.

2008-01-01

Evolution of CO2 in Lakes Monoun and Nyos (Cameroon) before and during controlled degassing is described using results of regular monitoring obtained during the last 21 years. The CO2(aq) profiles soon after the limnic eruptions were estimated for Lakes Monoun and Nyos using the CTD data obtained in October and November 1986, respectively. Based on the CO2(aq) profiles through time, the CO2 Content and its change over time were calculated for both lakes. The CO2 accumulation rate calculated from the pre-degassing data, was constant after the limnic eruption at Lake Nyos (1986-2001), whereas the rate appeared initially high (1986-1996) but later slowed down (1996-2003) at Lake Monoun. The CO2 concentration at 58 m depth in Lake Monoun in January 2003 was very close to saturation due to the CO2 accumulation. This situation is suggestive of a mechanism for the limnic eruption, because it may take place spontaneously without receiving an external trigger. The CO2 content of the lakes decreased significantly after controlled degassing started in March 2001 at Lake Nyos and in February 2003 at Lake Monoun. The current content is lower than the content estimated soon after the limnic eruption at both lakes. At Monoun the degassing rate increased greatly after February 2006 due to an increase of the number of degassing pipes and deepening of the pipe intake depth. The current CO2 content is ???40% of the maximum content attained just before the degassing started. At current degassing rates the lower chemocline will subside to the degassing pipe intake depth of 93 m in about one year. After this depth is reached, the gas removal rate will progressively decline because water of lower CO2(aq) concentration will be tapped by the pipes. To keep the CO2 content of Lake Monoun as small as possible, it is recommended to set up a new, simple device that sends deep water to the surface since natural recharge of CO2 will continue. Controlled degassing at Lake Nyos since 2001 has also reduced the CO2 content. It is currently slightly below the level estimated after the limnic eruption in 1986. However, the current CO2 content still amounts to 80% of the maximum level of 14.8 giga moles observed in January 2001. The depth of the lower chemocline may reach the pipe intake depth of 203 m within a few years. After this situation is reached the degassing rate with the current system will progressively decline, and it would take decades to remove the majority of dissolved gases even if the degassing system keeps working continuously. Additional degassing pipes must be installed to speed up gas removal from Lake Nyos in order to make the area safer for local populations. Copyright ?? 2008 by The Geochemical Society of Japan.

Changes of heterogeneous cell populations in the Ishikawa cell line during long-term culture: Proposal for an in vitro clonal evolution model of tumor cells.

PubMed

Kasai, Fumio; Hirayama, Noriko; Ozawa, Midori; Iemura, Masashi; Kohara, Arihiro

2016-06-01

Genomic changes in tumor cell lines can occur during culture, leading to differences between cell lines carrying the same name. In this study, genome profiles between low and high passages were investigated in the Ishikawa 3-H-12 cell line (JCRB1505). Cells contained between 43 and 46 chromosomes and the modal number changed from 46 to 45 during culture. Cytogenetic analysis revealed that a translocation t(9;14), observed in all metaphases, is a robust marker for this cell line. Single-nucleotide polymorphism microarrays showed a heterogeneous copy number in the early passages and distinct profiles at late passages. These results demonstrate that cell culture can lead to elimination of ancestral clones by sequential selection, resulting in extensive replacement with a novel clone. Our observations on Ishikawa cells in vitro are different from the in vivo heterogeneity in which ancestral clones are often retained during tumor evolution and suggest a model for in vitro clonal evolution. Copyright © 2016 Elsevier Inc. All rights reserved.

Surface brightness profiles and structural parameters for 53 rich stellar clusters in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Mackey, A. D.; Gilmore, G. F.

2003-01-01

We have compiled a pseudo-snapshot data set of two-colour observations from the Hubble Space Telescope archive for a sample of 53 rich LMC clusters with ages of 106-1010 yr. We present surface brightness profiles for the entire sample, and derive structural parameters for each cluster, including core radii, and luminosity and mass estimates. Because we expect the results presented here to form the basis for several further projects, we describe in detail the data reduction and surface brightness profile construction processes, and compare our results with those of previous ground-based studies. The surface brightness profiles show a large amount of detail, including irregularities in the profiles of young clusters (such as bumps, dips and sharp shoulders), and evidence for both double clusters and post-core-collapse (PCC) clusters. In particular, we find power-law profiles in the inner regions of several candidate PCC clusters, with slopes of approximately -0.7, but showing considerable variation. We estimate that 20 +/- 7 per cent of the old cluster population of the Large Magellanic Cloud (LMC) has entered PCC evolution, a similar fraction to that for the Galactic globular cluster system. In addition, we examine the profile of R136 in detail and show that it is probably not a PCC cluster. We also observe a trend in core radius with age that has been discovered and discussed in several previous publications by different authors. Our diagram has better resolution, however, and appears to show a bifurcation at several hundred Myr. We argue that this observed relationship reflects true physical evolution in LMC clusters, with some experiencing small-scale core expansion owing to mass loss, and others large-scale expansion owing to some unidentified characteristic or physical process.

Vertically resolved characteristics of air pollution during two severe winter haze episodes in urban Beijing, China

NASA Astrophysics Data System (ADS)

Wang, Qingqing; Sun, Yele; Xu, Weiqi; Du, Wei; Zhou, Libo; Tang, Guiqian; Chen, Chen; Cheng, Xueling; Zhao, Xiujuan; Ji, Dongsheng; Han, Tingting; Wang, Zhe; Li, Jie; Wang, Zifa

2018-02-01

We conducted the first real-time continuous vertical measurements of particle extinction (bext), gaseous NO2, and black carbon (BC) from ground level to 260 m during two severe winter haze episodes at an urban site in Beijing, China. Our results illustrated four distinct types of vertical profiles: (1) uniform vertical distributions (37 % of the time) with vertical differences less than 5 %, (2) higher values at lower altitudes (29 %), (3) higher values at higher altitudes (16 %), and (4) significant decreases at the heights of ˜ 100-150 m (14 %). Further analysis demonstrated that vertical convection as indicated by mixing layer height, temperature inversion, and local emissions are three major factors affecting the changes in vertical profiles. Particularly, the formation of type 4 was strongly associated with the stratified layer that was formed due to the interactions of different air masses and temperature inversions. Aerosol composition was substantially different below and above the transition heights with ˜ 20-30 % higher contributions of local sources (e.g., biomass burning and cooking) at lower altitudes. A more detailed evolution of vertical profiles and their relationship with the changes in source emissions, mixing layer height, and aerosol chemistry was illustrated by a case study. BC showed overall similar vertical profiles as those of bext (R2 = 0.92 and 0.69 in November and January, respectively). While NO2 was correlated with bext for most of the time, the vertical profiles of bext / NO2 varied differently for different profiles, indicating the impact of chemical transformation on vertical profiles. Our results also showed that more comprehensive vertical measurements (e.g., more aerosol and gaseous species) at higher altitudes in the megacities are needed for a better understanding of the formation mechanisms and evolution of severe haze episodes in China.

Evolution of Rotor Wake in Swirling Flow

NASA Technical Reports Server (NTRS)

El-Haldidi, Basman; Atassi, Hafiz; Envia, Edmane; Podboy, Gary

2000-01-01

A theory is presented for modeling the evolution of rotor wakes as a function of axial distance in swirling mean flows. The theory, which extends an earlier work to include arbitrary radial distributions of mean swirl, indicates that swirl can significantly alter the wake structure of the rotor especially at large downstream distances (i.e., for moderate to large rotor-stator spacings). Using measured wakes of a representative scale model fan stage to define the mean swirl and initial wake perturbations, the theory is used to predict the subsequent evolution of the wakes. The results indicate the sensitivity of the wake evolution to the initial profile and the need to have complete and consistent initial definition of both velocity and pressure perturbations.

Structural profile reconstructions and thermal metamorphic evolution in the slate belt of southern Hsuehshan Range in the active Taiwan mountain belt

NASA Astrophysics Data System (ADS)

Wu, Yu; Chen, Chih-Tung; Lee, Jian-Cheng; Shyu, J. Bruce H.

2017-04-01

The fate of passive continental margin in collisional orogens is crucial in understanding tectonic evolution of mountain belts. The active arc-continent collision of Taiwan is considered as a model case in studying mountain building processes, and largely consists of deformed margin basement and cover series. Among the whole orogeny belt, the slate belt of the Hsuehshan Range (HR) is a prominent large-scale pop-up structural on the prowedge part of the orogen, and is composed of metamorphosed Eocene to Miocene sediments which experienced only the Neogene Taiwan orogeny after diagenesis in margin graben. Characterizing the metamorphic history of the HR is essential for reconstructing its geological evolution during the mountain building processes. However, previous studies were mostly focused on northern and central HR, structural investigation coupled with metamorphic documentation in the southern part of HR, which is the most active part of the orogeny belt, is therefore targeted in this work. Since carbonaceous material is common in pelitic protolith of HR slates, the Raman spectrum of carbonaceous material (RSCM) measuring the rock peak temperature is chosen for quantitative thermal metamorphic documentation. In this study, we reconstruct a geological structural profile in western central Taiwan across the prowedge part of the mountain belt containing the southern HR by combining the surface geological data, well log records and published seismic reflection profiles. Although most of the existing data are concentrated in the fold-and-thrust belt, they are now reinforced by new field structural measurements and RSCM samples in the southern HR. In total 27 RSCM samples were collected along 2 transects perpendicular to the average strike with a dense interval about 2 km. The results allow us to map peak temperature distribution across southern HR, and provide new constraints for structural profile reconstruction and reappraisal of the structural evolution of the HR and neighboring fold-and-thrust belt. As shown in the previous thermal metamorphic investigation, we expected that southern HR strata acquired highest temperature during its burial stage than the orogenic stage like their central HR counterparts, thus experiencing mostly retrograde metamorphism in the entire mountain building processes.

Dynamical evolution and spatial mixing of multiple population globular clusters

NASA Astrophysics Data System (ADS)

Vesperini, Enrico; McMillan, Stephen L. W.; D'Antona, Francesca; D'Ercole, Annibale

2013-03-01

Numerous spectroscopic and photometric observational studies have provided strong evidence for the widespread presence of multiple stellar populations in globular clusters. In this paper, we study the long-term dynamical evolution of multiple population clusters, focusing on the evolution of the spatial distributions of the first- (FG) and second-generation (SG) stars. In previous studies, we have suggested that SG stars formed from the ejecta of FG AGB stars are expected initially to be concentrated in the cluster inner regions. Here, by means of N-body simulations, we explore the time-scales and the dynamics of the spatial mixing of the FG and the SG populations and their dependence on the SG initial concentration. Our simulations show that, as the evolution proceeds, the radial profile of the SG/FG number ratio, NSG/NFG, is characterized by three regions: (1) a flat inner part; (2) a declining part in which FG stars are increasingly dominant and (3) an outer region where the NSG/NFG profile flattens again (the NSG/NFG profile may rise slightly again in the outermost cluster regions). Until mixing is complete and the NSG/NFG profile is flat over the entire cluster, the radial variation of NSG/NFG implies that the fraction of SG stars determined by observations covering a limited range of radial distances is not, in general, equal to the SG global fraction, (NSG/NFG)glob. The distance at which NSG/NFG equals (NSG/NFG)glob is approximately between 1 and 2 cluster half-mass radii. The time-scale for complete mixing depends on the SG initial concentration, but in all cases complete mixing is expected only for clusters in advanced evolutionary phases, having lost at least 60-70 per cent of their mass due to two-body relaxation (in addition to the early FG loss due to the cluster expansion triggered by SNII ejecta and gas expulsion).The results of our simulations suggest that in many Galactic globular clusters the SG should still be more spatially concentrated than the FG.

Near-Inertial and Tidal Currents Detected with a Vessel Mounted Acoustic Doppler Current Profiler in the Western Mediterranean Sea

NASA Technical Reports Server (NTRS)

Garcia-Gorriz, E.; Candela, J.; Font, J.

1998-01-01

The Acoustic Doppler Current Profiler (ADCP) combined with accurate navigation provides absolute current velocities which include information from all the frequencies which have a dynamical presence in the ocean.

Evaluation of a Magnetically-Filtered Faraday Probe for Measuring the ion Current Density Profile of a Hall Thruster

DTIC Science & Technology

2004-07-01

The ability of a magnetically-filtered Faraday probe (MFFP) to obtain the ion current density profile of a Hall thruster is investigated. The MFFP is...MFFP, boxed Faraday probe (BFP), and nude Faraday probe are used to measure the ion current density profile of a 5 kW Hall thruster operated over the

Evolution of Elemental Composition and Morphology in Fusion Reactor's First Wall

NASA Astrophysics Data System (ADS)

Kim, Yong W.

2007-11-01

Forcing of a multi-element alloy by a gradient field can modify the spatial profile of its elemental composition. The gradient field may be in the imposed temperature or the flux of impinging particles. In a fusion device, both scenarios apply. The consequences must be well understood because they change the thermal transport properties as well as the strength, corrosion and wear characteristics of the first wall materials. Given the large number of directions material evolution can take, new robust methods of near-surface composition analyses are needed. This paper presents a new measurement methodology and requisite instrumentation, which can provide measures of local elemental composition and transport properties simultaneously by time-resolved spectroscopy of laser-produced plasma (LPP) plume emissions from the specimen surfaces. The studies to date show that the composition profiles can be modified thermally in a reproducible manner; disparate thermal transport of constituent atoms can incur modifications of near-surface composition profiles.[Y.W. Kim, Int. J. Thermophysics 28, 732 (2007)] Also, disparate fluxes of fuel particles, fusion products and impurities force the first walls in myriad ways. Repetitive application of the LPP analysis can resolve the near-surface composition profile as well as transport properties over several microns with depth resolutions to 20 nm. Work supported in part by NSF-DMR.

The influence of slavemaking lifestyle, caste and sex on chemical profiles in Temnothorax ants: insights into the evolution of cuticular hydrocarbons

PubMed Central

Kleeberg, Isabelle

2017-01-01

Chemical communication is central for the formation and maintenance of insect societies. Generally, social insects only allow nest-mates into their colony, which are recognized by their cuticular hydrocarbons (CHCs). Social parasites, which exploit insect societies, are selected to circumvent host recognition. Here, we studied whether chemical strategies to reduce recognition evolved convergently in slavemaking ants, and whether they extend to workers, queens and males alike. We studied CHCs of three social parasites and their related hosts to investigate whether the parasitic lifestyle selects for specific chemical traits that reduce host recognition. Slavemaker profiles were characterized by shorter-chained hydrocarbons and a shift from methyl-branched alkanes to n-alkanes, presumably to reduce recognition cue quantity. These shifts were consistent across independent origins of slavery and were found in isolated ants and those emerging in their mother colony. Lifestyle influenced profiles of workers most profoundly, with little effect on virgin queen profiles. We detected an across-species caste signal, with workers, for which nest-mate recognition is particularly important, carrying more and longer-chained hydrocarbons and males exhibiting a larger fraction of n-alkanes. This comprehensive study of CHCs across castes and species reveals how lifestyle-specific selection can result in convergent evolution of chemical phenotypes. PMID:28298345

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles

PubMed Central

Ghouzam, Yassine; Postic, Guillaume; Guerin, Pierre-Edouard; de Brevern, Alexandre G.; Gelly, Jean-Christophe

2016-01-01

Protein structure prediction based on comparative modeling is the most efficient way to produce structural models when it can be performed. ORION is a dedicated webserver based on a new strategy that performs this task. The identification by ORION of suitable templates is performed using an original profile-profile approach that combines sequence and structure evolution information. Structure evolution information is encoded into profiles using structural features, such as solvent accessibility and local conformation —with Protein Blocks—, which give an accurate description of the local protein structure. ORION has recently been improved, increasing by 5% the quality of its results. The ORION web server accepts a single protein sequence as input and searches homologous protein structures within minutes. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template. For the modeling step, a protein 3D structure can be directly obtained from the selected template by MODELLER and displayed with global and local quality model estimation measures. The sequence and the predicted structure of 4 examples from the CAMEO server and a recent CASP11 target from the ‘Hard’ category (T0818-D1) are shown as pertinent examples. Our web server is accessible at http://www.dsimb.inserm.fr/ORION/. PMID:27319297

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles.

PubMed

Ghouzam, Yassine; Postic, Guillaume; Guerin, Pierre-Edouard; de Brevern, Alexandre G; Gelly, Jean-Christophe

2016-06-20

Protein structure prediction based on comparative modeling is the most efficient way to produce structural models when it can be performed. ORION is a dedicated webserver based on a new strategy that performs this task. The identification by ORION of suitable templates is performed using an original profile-profile approach that combines sequence and structure evolution information. Structure evolution information is encoded into profiles using structural features, such as solvent accessibility and local conformation -with Protein Blocks-, which give an accurate description of the local protein structure. ORION has recently been improved, increasing by 5% the quality of its results. The ORION web server accepts a single protein sequence as input and searches homologous protein structures within minutes. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template. For the modeling step, a protein 3D structure can be directly obtained from the selected template by MODELLER and displayed with global and local quality model estimation measures. The sequence and the predicted structure of 4 examples from the CAMEO server and a recent CASP11 target from the 'Hard' category (T0818-D1) are shown as pertinent examples. Our web server is accessible at http://www.dsimb.inserm.fr/ORION/.

Upper Ocean Measurements from Profiling Floats in the Arabian Sea During NASCar

DTIC Science & Technology

2015-09-30

top-level goals] OBJECTIVES The work proposed here is designed to examine the seasonal evolution of the upper ocean in the northern Arabian...Sea over several seasonal cycles, with the specific objectives of (1) Documenting the spatial variations in the seasonal cycle of the upper ocean...circulation of the Arabian Sea and the seasonal and spatial evolution of the surface mixed layer, and would be used in conjunction with HYCOM model

Space Station Displays and Controls Technology Evolution

NASA Technical Reports Server (NTRS)

Blackburn, Greg C.

1990-01-01

Viewgraphs on space station displays and controls technology evolution are presented. Topics covered include: a historical perspective; major development objectives; current development activities; key technology areas; and technology evolution issues.

Large wind ripples on Mars: A record of atmospheric evolution

NASA Astrophysics Data System (ADS)

Lapotre, M. G. A.; Ewing, R. C.; Lamb, M. P.; Fischer, W. W.; Grotzinger, J. P.; Rubin, D. M.; Lewis, K. W.; Ballard, M. J.; Day, M.; Gupta, S.; Banham, S. G.; Bridges, N. T.; Des Marais, D. J.; Fraeman, A. A.; Grant, J. A.; Herkenhoff, K. E.; Ming, D. W.; Mischna, M. A.; Rice, M. S.; Sumner, D. A.; Vasavada, A. R.; Yingst, R. A.

2016-07-01

Wind blowing over sand on Earth produces decimeter-wavelength ripples and hundred-meter- to kilometer-wavelength dunes: bedforms of two distinct size modes. Observations from the Mars Science Laboratory Curiosity rover and the Mars Reconnaissance Orbiter reveal that Mars hosts a third stable wind-driven bedform, with meter-scale wavelengths. These bedforms are spatially uniform in size and typically have asymmetric profiles with angle-of-repose lee slopes and sinuous crest lines, making them unlike terrestrial wind ripples. Rather, these structures resemble fluid-drag ripples, which on Earth include water-worked current ripples, but on Mars instead form by wind because of the higher kinematic viscosity of the low-density atmosphere. A reevaluation of the wind-deposited strata in the Burns formation (about 3.7 billion years old or younger) identifies potential wind-drag ripple stratification formed under a thin atmosphere.

Proteomics in pharmaceutical research and development.

PubMed

Cutler, Paul; Voshol, Hans

2015-08-01

In the 20 years since its inception, the evolution of proteomics in pharmaceutical industry has mirrored the developments within academia and indeed other industries. From initial enthusiasm and subsequent disappointment in global protein expression profiling, pharma research saw the biggest impact when relating to more focused approaches, such as those exploring the interaction between proteins and drugs. Nowadays, proteomics technologies have been integrated in many areas of pharmaceutical R&D, ranging from the analysis of therapeutic proteins to the monitoring of clinical trials. Here, we review the development of proteomics in the drug discovery process, placing it in a historical context as well as reviewing the current status in light of the contributions to this special issue, which reflect some of the diverse demands of the drug and biomarker pipelines. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

[Retrobulbar optic nevritis and chicken pox: a case report in a child].

PubMed

Roelandt, V; Fayol, L; Hugonenq, C; Mancini, J; Chabrol, B

2005-03-01

We report here the case of a three-year-old boy presenting with an optic neuritis during the invasive phase of a chicken pox. This clinical, infrequent picture, can be directly due to the virus or be secondary to an auto-immune mechanism. The examination of the ocular fundus, the profile of the spinal fluid, the MRI and the measure of visual evoked potential allow to reach diagnosis and to identify the type of lesion. There is no consensus on the treatment of this optic neuritis and the current attitude is therapeutic abstention because of a rapid spontaneous improvement. Cerebellitis, meningitis can also be seen during chicken pox. Their evolution is quickly favorable, not requiring additional exam. Encephalitis can result from an auto-immune lesion of the white matter and require then the use of corticoids with antiviral drugs.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, M. C., E-mail: mthompson@trialphaenergy.com; Gota, H.; Putvinski, S.

The C-2U experiment at Tri Alpha Energy studies the evolution of field-reversed configuration (FRC) plasmas sustained by neutral beam injection. Data on the FRC plasma performance are provided by a comprehensive suite of diagnostics that includes magnetic sensors, interferometry, Thomson scattering, spectroscopy, bolometry, reflectometry, neutral particle analyzers, and fusion product detectors. While many of these diagnostic systems were inherited from the preceding experiment C-2, C-2U has a variety of new and upgraded diagnostic systems: multi-chord far-infrared polarimetry, multiple fast imaging cameras with selectable atomic line filters, proton detector arrays, and 100 channel bolometer units capable of observing multiple regions ofmore » the spectrum simultaneously. In addition, extensive ongoing work focuses on advanced methods of measuring separatrix shape and plasma current profile that will facilitate equilibrium reconstruction and active control of the FRC plasma.« less

Large wind ripples on Mars: A record of atmospheric evolution

USGS Publications Warehouse

Lapotre, M G; Ewing, R C; Lamb, M P; Fischer, W W; Grotzinger, J P; Rubin, D M; Lewis, K W; Ballard, M; Day, Mitch D.; Gupta, S.; Banham, S G; Bridges, N T; Des Marais, D J; Fraeman, A A; Grant, J A; Herkenhoff, Kenneth E.; Ming, D W; Mischna, M A; Rice, M S; Sumner, D A; Vasavada, A R; Yingst, R A

2016-01-01

Wind blowing over sand on Earth produces decimeter-wavelength ripples and hundred-meter– to kilometer-wavelength dunes: bedforms of two distinct size modes. Observations from the Mars Science Laboratory Curiosity rover and the Mars Reconnaissance Orbiter reveal that Mars hosts a third stable wind-driven bedform, with meter-scale wavelengths. These bedforms are spatially uniform in size and typically have asymmetric profiles with angle-of-repose lee slopes and sinuous crest lines, making them unlike terrestrial wind ripples. Rather, these structures resemble fluid-drag ripples, which on Earth include water-worked current ripples, but on Mars instead form by wind because of the higher kinematic viscosity of the low-density atmosphere. A reevaluation of the wind-deposited strata in the Burns formation (about 3.7 billion years old or younger) identifies potential wind-drag ripple stratification formed under a thin atmosphere.

How Eddies Gain, Retain, and Release Water: A Case Study of a Hokkaido Anticyclone

NASA Astrophysics Data System (ADS)

Prants, S. V.; Budyansky, M. V.; Uleysky, M. Yu.

2018-03-01

A Lagrangian methodology is elaborated to identify the origin of water masses in the Kuroshio-Oyashio frontal zone where waters of the Kuroshio Extension and Oyashio Current and of the Japan and Okhotsk Seas converge. It allows one to track the evolution of mesoscale eddies during the satellite-altimetry era and to document how they gain, retain, and release water masses of different origin. The methodology is applied to study warm-core mesoscale anticyclones propagating along the Japan and Kuril Trenches near the eastern coast of Hokkaido Island that have been observed from 1 January 1993 to 10 December 2016 in an altimetry-based velocity field. The Hokkaido eddy, sampled by profiling floats and a few cruises in 2003 and 2004, is analyzed in detail in order to compare Lagrangian simulation results to observations.

Zinc electrodeposition from flowing alkaline zincate solutions: Role of hydrogen evolution reaction

NASA Astrophysics Data System (ADS)

Dundálek, Jan; Šnajdr, Ivo; Libánský, Ondřej; Vrána, Jiří; Pocedič, Jaromír; Mazúr, Petr; Kosek, Juraj

2017-12-01

The hydrogen evolution reaction is known as a parasitic reaction during the zinc electrodeposition from alkaline zincate solutions and is thus responsible for current efficiency losses during the electrolysis. Besides that, the rising hydrogen bubbles may cause an extra convection within a diffusion layer, which leads to an enhanced mass transport of zincate ions to an electrode surface. In this work, the mentioned phenomena were studied experimentally in a flow through electrolyzer and the obtained data were subsequently evaluated by mathematical models. The results prove the indisputable influence of the rising hydrogen bubbles on the additional mixing of the diffusion layer, which partially compensates the drop of the current efficiency of the zinc deposition at higher current flows. Moreover, the results show that the current density ratio (i.e., the ratio of an overall current density to a zinc limiting current density) is not suitable for the description of the zinc deposition, because the hydrogen evolution current density is always involved in the overall current density.

Plasma Rotation and Radial Electric Field Response to Resonant Magnetic Perturbations in DIII-D

NASA Astrophysics Data System (ADS)

Moyer, R. A.

2012-10-01

Analysis of DIII-D experiments have revealed a complex picture of the evolution of the toroidal rotation vtor and radial electric field Er when applying edge resonant magnetic perturbations (RMPs) in H-mode plasmas. Measurements indicate that RMPs induce changes to the plasma rotation and Er across the plasma profile, well into the plasma core where islands or stochasticity are not expected. In the pedestal, the change in Er comes primarily from the vxB changes even though the ion diamagnetic contribution to Er is larger. This allows the RMP to change Er faster than the transport timescale for altering the pressure gradient. For n=3 RMPs, the pedestal vtor goes to zero as fast as the RMP current rises, suggesting increased toroidal viscosity with the RMP, followed by a slow rise in co-plasma current vtor (pedestal ``spin-up'') as the pedestal density pumps out. This spin-up could result from a reduction in ELM-induced momentum transport or a resonant jxB torque due to radial current. As vtor becomes more positive and the pressure pedestal narrows, the electron perpendicular rotation ˜0 point moves out toward the top of the pedestal; increasing the RMP current moves this crossing point closer to the top of the pedestal. These changes reduce the mean ExB shearing rate across the outer half of the discharge from several times the linear growth rate for intermediate-scale turbulence to less than the linear growth rate, consistent with increased turbulent transport. Full-f kinetic simulations with self-consistent plasma response and Er using the XGC0 code have qualitatively reproduced the observed profile and Er changes. These results suggest that similar to their role in regulating H-mode plasma transport and stability, plasma rotation and Er play a critical role in the effect of RMPs on plasma performance.

The crustal structures from Wuyi-Yunkai orogen to Taiwan orogen: the onshore-offshore wide-angle seismic experiment of TAIGER and ATSEE projects

NASA Astrophysics Data System (ADS)

Kuochen, H.; Kuo, N. Y. W.; Wang, C. Y.; Jin, X.; Cai, H. T.; Lin, J. Y.; Wu, F. T.; Yen, H. Y.; Huang, B. S.; Liang, W. T.; Okaya, D. A.; Brown, L. D.

2015-12-01

The crustal structure is key information for understanding the tectonic framework and geological evolution in the southeastern China and its adjacent area. In this study, we integrated the data sets from the TAIGER and ATSEE projects to resolve onshore-offshore deep crustal seismic profiles from the Wuyi-Yunkai orogen to the Taiwan orogen in southeastern China. Totally, there are three seismic profiles resolved and the longest profile is 850 km. Unlike 2D and 3D first arrival travel-time tomography from previous studies, we used both refracted and reflected phases (Pg, Pn, PcP, and PmP) to model the crustal structures and the crustal reflectors. 40 shots, 2 earthquakes, and about 1,950 stations were used and 15,319 arrivals were picked among three transects. As a result, the complex crustal evolution since Paleozoic era are shown, which involved the closed Paleozoic rifted basin in central Fujian, the Cenozoic extension due to South China sea opening beneath the coastline of southern Fujian, and the on-going collision of the Taiwan orogen.

Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.

PubMed

Abbosh, Christopher; Birkbak, Nicolai J; Wilson, Gareth A; Jamal-Hanjani, Mariam; Constantin, Tudor; Salari, Raheleh; Le Quesne, John; Moore, David A; Veeriah, Selvaraju; Rosenthal, Rachel; Marafioti, Teresa; Kirkizlar, Eser; Watkins, Thomas B K; McGranahan, Nicholas; Ward, Sophia; Martinson, Luke; Riley, Joan; Fraioli, Francesco; Al Bakir, Maise; Grönroos, Eva; Zambrana, Francisco; Endozo, Raymondo; Bi, Wenya Linda; Fennessy, Fiona M; Sponer, Nicole; Johnson, Diana; Laycock, Joanne; Shafi, Seema; Czyzewska-Khan, Justyna; Rowan, Andrew; Chambers, Tim; Matthews, Nik; Turajlic, Samra; Hiley, Crispin; Lee, Siow Ming; Forster, Martin D; Ahmad, Tanya; Falzon, Mary; Borg, Elaine; Lawrence, David; Hayward, Martin; Kolvekar, Shyam; Panagiotopoulos, Nikolaos; Janes, Sam M; Thakrar, Ricky; Ahmed, Asia; Blackhall, Fiona; Summers, Yvonne; Hafez, Dina; Naik, Ashwini; Ganguly, Apratim; Kareht, Stephanie; Shah, Rajesh; Joseph, Leena; Marie Quinn, Anne; Crosbie, Phil A; Naidu, Babu; Middleton, Gary; Langman, Gerald; Trotter, Simon; Nicolson, Marianne; Remmen, Hardy; Kerr, Keith; Chetty, Mahendran; Gomersall, Lesley; Fennell, Dean A; Nakas, Apostolos; Rathinam, Sridhar; Anand, Girija; Khan, Sajid; Russell, Peter; Ezhil, Veni; Ismail, Babikir; Irvin-Sellers, Melanie; Prakash, Vineet; Lester, Jason F; Kornaszewska, Malgorzata; Attanoos, Richard; Adams, Haydn; Davies, Helen; Oukrif, Dahmane; Akarca, Ayse U; Hartley, John A; Lowe, Helen L; Lock, Sara; Iles, Natasha; Bell, Harriet; Ngai, Yenting; Elgar, Greg; Szallasi, Zoltan; Schwarz, Roland F; Herrero, Javier; Stewart, Aengus; Quezada, Sergio A; Peggs, Karl S; Van Loo, Peter; Dive, Caroline; Lin, C Jimmy; Rabinowitz, Matthew; Aerts, Hugo J W L; Hackshaw, Allan; Shaw, Jacqui A; Zimmermann, Bernhard G; Swanton, Charles

2017-04-26

The early detection of relapse following primary surgery for non-small-cell lung cancer and the characterization of emerging subclones, which seed metastatic sites, might offer new therapeutic approaches for limiting tumour recurrence. The ability to track the evolutionary dynamics of early-stage lung cancer non-invasively in circulating tumour DNA (ctDNA) has not yet been demonstrated. Here we use a tumour-specific phylogenetic approach to profile the ctDNA of the first 100 TRACERx (Tracking Non-Small-Cell Lung Cancer Evolution Through Therapy (Rx)) study participants, including one patient who was also recruited to the PEACE (Posthumous Evaluation of Advanced Cancer Environment) post-mortem study. We identify independent predictors of ctDNA release and analyse the tumour-volume detection limit. Through blinded profiling of postoperative plasma, we observe evidence of adjuvant chemotherapy resistance and identify patients who are very likely to experience recurrence of their lung cancer. Finally, we show that phylogenetic ctDNA profiling tracks the subclonal nature of lung cancer relapse and metastasis, providing a new approach for ctDNA-driven therapeutic studies.

The forecast of coastal recession in the eastern gulf of Finland for the twenty-first century

NASA Astrophysics Data System (ADS)

Leont'yev, I. O.; Ryabchuk, D. V.; Sergeev, A. Yu.; Kovaleva, O. A.

2015-05-01

The evolution of a significant part of the coast in the study area is determined by extreme storm surges eroding the upper part of dunes and inducing coastal recession. In order to forecast the recession a special method using numerical modelling of storm-induced changes in the coastal profiles based on the CROSS-P model is used. The response of the shoreline profile to sea-level rise is estimated using the Bruun rule. Three types of future coastal evolution are distinguished depending on slope of an active part of the profile. It is shown that if the most probable patterns of storm activity and sea level rise occur then the relatively steep coasts in an area from Komarovo to Solnechnoe will retreat by 302-40 meters. Recession of less steep coasts (Ushkovo, south Kotlin, and Petrodvorets) is expected to be 10-20 meters, whereas the extremely gently dipping coasts (in the vicinity of Sestroretsk and near the northern end of the St. Petersburg Flood Protection Complex (FPC)) will retreat by 50-100 m.

PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.

PubMed

Paul, Sandip; Bhardwaj, Archana; Bag, Sumit K; Sokurenko, Evgeni V; Chattopadhyay, Sujay

2015-12-01

A large amount of genomic data, especially from multiple isolates of a single species, has opened new vistas for microbial genomics analysis. Analyzing the pan-genome (i.e. the sum of genetic repertoire) of microbial species is crucial in understanding the dynamics of molecular evolution, where virulence evolution is of major interest. Here we present PanCoreGen - a standalone application for pan- and core-genomic profiling of microbial protein-coding genes. PanCoreGen overcomes key limitations of the existing pan-genomic analysis tools, and develops an integrated annotation-structure for a species-specific pan-genomic profile. It provides important new features for annotating draft genomes/contigs and detecting unidentified genes in annotated genomes. It also generates user-defined group-specific datasets within the pan-genome. Interestingly, analyzing an example-set of Salmonella genomes, we detect potential footprints of adaptive convergence of horizontally transferred genes in two human-restricted pathogenic serovars - Typhi and Paratyphi A. Overall, PanCoreGen represents a state-of-the-art tool for microbial phylogenomics and pathogenomics study. Copyright © 2015 Elsevier Inc. All rights reserved.

Dislocation structure in textured zirconium tensile-deformed along rolling and transverse directions determined by X-ray diffraction line profile analysis

NASA Astrophysics Data System (ADS)

Fan, Zhijian; Jóni, Bertalan; Xie, Lei; Ribárik, Gábor; Ungár, Tamás

2018-04-01

Specimens of cold-rolled zirconium were tensile-deformed along the rolling (RD) and the transverse (TD) directions. The stress-strain curves revealed a strong texture dependence. High resolution X-ray line profile analysis was used to determine the prevailing active slip-systems in the specimens with different textures. The reflections in the X-ray diffraction patterns were separated into two groups. One group corresponds to the major and the other group to the random texture component, respectively. The dislocation densities, the subgrain size and the prevailing active slip-systems were evaluated by using the convolutional multiple whole profile (CMWP) procedure. These microstructure parameters were evaluated separately in the two groups of reflections corresponding to the two different texture components. Significant differences were found in both, the evolution of dislocation densities and the development of the fractions of and type slip systems in the RD and TD specimens during tensile deformation. The differences between the RD and TD stress-strain curves are discussed in terms of the differences of the microstructure evolution.

Self-consistent discharge growing model of helicon plasma

NASA Astrophysics Data System (ADS)

Isayama, Shogo; Hada, Tohru; Shinohara, Shunjiro; Tanikawa, Takao

2015-11-01

Helicon plasma is a high-density and low-temperature plasma generated by the electromagnetic (Helicon) wave excited in the plasma. It is thought to be useful for various applications including electric thrusters. Physics of helicon plasma production involves such fundamental processes as the wave propagation (dispersion relation), collisional and non-collisional wave damping, plasma heating, ionization/recombination of neutral particles, and modification of the dispersion relation by newly ionized plasma. There remain a number of unsolved physical issues such as, how the Helicon and the TG modes influence the plasma density, electron temperature and their spatial profiles. While the Helicon mode is absorbed in the bulk plasma, the TG mode is mostly absorbed near the edge of the plasma. The local power deposition in the helicon plasma is mostly balanced by collisional loss. This local power balance can give rise to the inhomogeneous electron temperature profile that leads to time evolution of density profile and dispersion relation. In our study, we construct a self-consistent model of the discharge evolution that includes the wave excitation, electron heat transfer, and diffusion of charged particles.

Modeling Radiation Fog

NASA Astrophysics Data System (ADS)

K R, Sreenivas; Mohammad, Rafiuddin

2016-11-01

Predicting the fog-onset, its growth and dissipation helps in managing airports and other modes of transport. After sunset, occurrence of fog requires moist air, low wind and clear-sky conditions. Under these circumstances radiative heat transfer plays a vital role in the NBL. Locally, initiation of fog happens when the air temperature falls below the dew-point. Thus, to predict the onset of fog at a given location, one has to compute evolution of vertical temperature profile. Earlier,our group has shown that the presence of aerosols and vertical variation in their number density determines the radiative-cooling and hence development of vertical temperature profile. Aerosols, through radiation in the window-band, provides an efficient path for air layers to lose heat to the cold, upper atmosphere. This process creates cooler air layer between warmer ground and upper air layers and resulting temperature profile facilitate the initiation of fog. Our results clearly indicates that accounting for the presence of aerosols and their radiative-transfer is important in modeling micro-meteorological process of fog formation and its evolution. DST, Govt. INDIA.

Spectroscopic Diagnostics of Electric Fields in the Plasma of Current Sheets

NASA Astrophysics Data System (ADS)

Gavrilenko, Valeri; Kyrie, Natalya P.; Frank, Anna G.; Oks, Eugene

2004-11-01

Spectroscopic measurements of electric fields (EFs) in current sheet plasmas were performed in the CS-3D device. The device is intended to study the evolution of current sheets and the magnetic reconnection phenomena. We used the broadening of spectral lines (SLs) of HeII ions for diagnostics of EFs in the current sheet middle plane, and the broadening of SLs of HeI atoms for detection of EFs in the current sheet peripheral regions. For detection of EFs in current sheet plasma, we used SLs of HeII ions at 468.6; 320.3 and 656.0 nm, as well as SLs of HeI atoms at 667.8; 587.6; 492.2 and 447.1 nm. The latter two lines are of a special interest since their profiles include the dipole-forbidden components along with the allowed components. The experimental data have been analyzed by using the numerical calculations based on the Model Microfield Method. The maximum plasma density in the middle of the sheet was in the range (2-8) × 10^16 cm-3, the density in the peripheral regions was (1-2)×10^15 cm-3, and the strength of the quasi-one-dimensional anomalous electric fields in the peripheral regions reached the value of 100 kV/cm. Supported by CRDF, grant RU-P1-2594-MO-04; by the RFBR, grant 03-02-17282; and by the ISTC, project 2098.

Time and space resolved spectroscopic investigation during anode plume formation in a high-current vacuum arc

NASA Astrophysics Data System (ADS)

Khakpour, A.; Methling, R.; Uhrlandt, D.; Franke, St.; Gortschakow, S.; Popov, S.; Batrakov, A.; Weltmann, K. D.

2017-05-01

This paper presents time and space resolved results of spectroscopic measurements during the formation of an anode plume in the late current pulse phase of a high-current vacuum arc. The formation of the anode plume is investigated systematically based on the occurrence of high-current anode spots, depending on gap distance and current for AC 100 Hz and CuCr7525 butt contacts with a diameter of 10 mm. The anode plume is observed after the extinction of anode spot type 2 in which both the anode and cathode are active. It is concluded from the spatial profiles of the atomic and ionic radiation, parallel and perpendicular to anode surface, that the inner part of the plume is dominated by Cu I radiation, whereas a halo of light emitted by Cu II covers the plume. The radiation intensity of Cu III lines is quite low across the whole anode plume. Upper level excited state densities corresponding to Cu I lines at 510.55, 515.32, 521.82, 578.21 nm are determined. The temporal evolution of the resulting excitation temperature in the centre of the plume varies from 8500 K to 6000 K at 500 µs to 100 µs before current zero, respectively. The density calculated for Cu I at position in the plume is in the range of 1-5  ×  1019 m-3.

Electronic Health Record-Enabled Big-Data Approaches to Nephrotoxin-Associated Acute Kidney Injury Risk Prediction.

PubMed

Sutherland, Scott M

2018-06-09

Nephrotoxin-associated acute kidney injury (NTx-AKI) has become one of the most common causes of AKI among hospitalized adults and children; across acute and intensive care populations, exposure to nephrotoxins accounts for 15-25% of AKI. Although some interventions have shown promise in observational studies, no treatments currently exist for NTx-AKI once it occurs. Thus, nearly all effective strategies are aimed at prevention. The primary obstacle to prevention is risk prediction and the determination of which patients are more likely to develop NTx-AKI when exposed to medications with nephrotoxic potential. Historically, traditional statistical modeling has been applied to previously recognized clinical risk factors to identify predictors of NTx-AKI. However, increased electronic health record adoption and the evolution of "big-data" approaches to predictive analytics may offer a unique opportunity to prevent NTx-AKI events. This article describes prior and current approaches to NTx-AKI prediction and offers three novel use cases for electronic health record-enabled NTx-AKI forecasting and risk profiling. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Electroconvulsive therapy: Part I. A perspective on the evolution and current practice of ECT.

PubMed

Payne, Nancy A; Prudic, Joan

2009-09-01

The concept of inducing convulsions, mainly through chemical means, to promote mental wellness has existed since the 16th century. In 1938, Italian scientists first applied electrically induced therapeutic seizures. Although electroconvulsive therapy (ECT) is employed in the treatment of several psychiatric disorders, it is most frequently used today to treat severe depressive episodes and remains the most effective treatment available for those disorders. Despite this, ECT continues to be the most stigmatized treatment available in psychiatry, resulting in restrictions on and reduced accessibility to a helpful and potentially life-saving treatment. The psychiatric and psychosocial ramifications of this stigmatization may include the exacerbation of the increasingly serious, global health problem of major depressive disorders as well as serious consequences for individual patients who may not be offered, or may refuse, a potentially beneficial treatment. The goal of this first article in this two-part series is to provide an overview of ECT's historical development and discuss the current state of knowledge about ECT, including technical aspects of delivery, patient selection, its side-effect profile, and factors that may contribute to underuse of ECT.

Analysis of BSRT Profiles in the LHC at Injection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fitterer, M.; Stancari, G.; Papadopoulou, S.

The beam synchrotron radiation telescope (BSRT) at the LHC allows to take profiles of the transverse beam distribution, which can provide useful additional insight in the evolution of the transverse beam distribution. A python class has been developed [1], which allows to read in the BSRT profiles, usually stored in binary format, run different analysis tools and generate plots of the statistical parameters and profiles as well as videos of the the profiles. The detailed analysis will be described in this note. The analysis is based on the data obtained at injection energy (450 GeV) during MD1217 [2] and MD1415more » [3] which will be also used as illustrative example. A similar approach is also taken with a MATLAB based analysis described in [4].« less

RF slice profile effects in magnetic resonance fingerprinting.

PubMed

Hong, Taehwa; Han, Dongyeob; Kim, Min-Oh; Kim, Dong-Hyun

2017-09-01

The radio frequency (RF) slice profile effects on T1 and T2 estimation in magnetic resonance fingerprinting (MRF) are investigated with respect to time-bandwidth product (TBW), flip angle (FA) level and field inhomogeneities. Signal evolutions are generated incorporating the non-ideal slice selective excitation process using Bloch simulation and matched to the original dictionary with and without the non-ideal slice profile taken into account. For validation, phantom and in vivo experiments are performed at 3T. Both simulations and experiments results show that T1 and T2 error from non-ideal slice profile increases with increasing FA level, off-resonance, and low TBW values. Therefore, RF slice profile effects should be compensated for accurate determination of the MR parameters. Copyright © 2017 Elsevier Inc. All rights reserved.

The Tethys Rifting of the Valencia Trough Basin

NASA Astrophysics Data System (ADS)

Viñas, Marina; Ranero, César R.; Cameselle, Alejandra L.

2017-04-01

The western Mediterranean submarine realm is composed of several basin inferred to be formed by a common geodynamic process: upper plate extension during slab rollback of a retreating subduction zone. Although the time evolution of the geometry of the trenches is debated, all models assume that basins opened sequentially from NW (Gulf of Lions) towards the SE (Ligurian-Provençal and later Tyrrhenian basins) and SW (Valencia Trough and later Algerian-South Balearic and Alboran Basin) as trenches migrated. Basin opening history is key to reconstruct kinematics of slab retreat preferred in each model. However, the deep structure of basins is inadequately known due to the paucity of modern wide-angle and multichannel reflection seismic studies across entire systems, and absence of deep drilling in the deep-water regions of the basins, as a result, much of the opening evolution is inferred from indirect evidence. In the Valencia Trough Basin (VTB), drilling and vintage seismic data provide good knowledge of the shallow geology of the basin. However, crustal-scale information across the entire VTB has been limited to two studies (Figure 1): One in the late 80's (Valsis experiment) with three Expanded Spread Profiles that yielded local 1D velocity/depth models used to constrain 2D gravity modeling, and a few multichannel seismic profiles along the Iberian shelf and across segments of the basin. A second study in the early 90's (ESCI experiment) collected a low-resolution deep-penetration multichannel seismic reflection profile across the basin and a coincident wide-angle seismic line with numerous land stations in Iberia but a handful of widely-spaced Ocean Bottom Seismometers. In the absence of modern detailed crustal structure, the origin and evolution of the VTB is still debated. Industry multichannel seismic reflection profiles cover the SW segment of the VTB. This is a region where the basin sea floor is comparatively shallower and has numerous industry wells reaching deep into the sediment sequence, which provides an unprecedented view of the tectonic structure and distribution of synrift deposits across the entire basin, from the Iberian to the North Balearic margin (Figure 2). Here we first show that the seismic records provide full crustal-scale information. Later we discuss the tectonic and sedimentary structure that supports that crustal stretching and basin formation of the VTB occurred fundamentally during the Mesozoic times by strike-slip tectonics and not during Tertiary times by back-arc extension. We show that the current sea floor morphological configuration giving rise to the so-called Valencia Trough does not represent the changes in crystalline basement thickness related to rifting, but fundamentally a product of sediment dynamics, particularly by the development during post-Messinian times of the Ebro-river delta. Our results are significant to understand Tethyan rifting and need to be considered for plate kinematic reconstructions of the western Mediterranean.

High-resolution geophysical data from the inner continental shelf—Buzzards Bay, Massachusetts

USGS Publications Warehouse

Ackerman, Seth D.; Andrews, Brian D.; Foster, David S.; Baldwin, Wayne E.; Schwab, William C.

2012-01-01

The U.S. Geological Survey (USGS) and the Massachusetts Office of Coastal Zone Management (CZM) have cooperated to map approximately 410 square kilometers (km²) of the inner continental shelf in Buzzards Bay, Massachusetts. This report contains geophysical data collected by the USGS on three cruises conducted in 2009, 2010, and 2011, and additional bathymetry data collected by the National Oceanic and Atmospheric Administration in 2004. The geophysical data include (1) swath bathymetry using interferometric sonar and multibeam echosounder systems, (2) acoustic backscatter from sidescan sonar, and (3) seismic-reflection profiles from a chirp subbottom profiler. These spatial data support research on the Quaternary evolution of Buzzards Bay, the influence of sea-level change and sediment supply on coastal evolution, and efforts to understand the type, distribution, and quality of subtidal marine habitats in the coastal ocean of Massachusetts.

Lateral Downflows in Sunspot Penumbral Filaments and their Temporal Evolution

NASA Astrophysics Data System (ADS)

Esteban Pozuelo, S.; Bellot Rubio, L. R.; de la Cruz Rodríguez, J.

2015-04-01

We study the temporal evolution of downflows observed at the lateral edges of penumbral filaments in a sunspot located very close to the disk center. Our analysis is based on a sequence of nearly diffraction-limited scans of the Fe i 617.3 nm line taken with the CRisp Imaging Spectro-Polarimeter instrument at the Swedish 1 m Solar Telescope. We compute Dopplergrams from the observed intensity profiles using line bisectors and filter the resulting velocity maps for subsonic oscillations. Lateral downflows appear everywhere in the center-side penumbra as small, weak patches of redshifts next to or along the edges of blueshifted flow channels. These patches have an intermittent life and undergo mergings and fragmentations quite frequently. The lateral downflows move together with the hosting filaments and react to their shape variations, very much resembling the evolution of granular convection in the quiet Sun. There is a good relation between brightness and velocity in the center-side penumbra, with downflows being darker than upflows on average, which is again reminiscent of quiet Sun convection. These results point to the existence of overturning convection in sunspot penumbrae, with elongated cells forming filaments where the flow is upward but very inclined, and weak lateral downward flows. In general, the circular polarization profiles emerging from the lateral downflows do not show sign reversals, although sometimes we detect three-lobed profiles that are suggestive of opposite magnetic polarities in the pixel.

Off-axis current drive and real-time control of current profile in JT-60U

NASA Astrophysics Data System (ADS)

Suzuki, T.; Ide, S.; Oikawa, T.; Fujita, T.; Ishikawa, M.; Seki, M.; Matsunaga, G.; Hatae, T.; Naito, O.; Hamamatsu, K.; Sueoka, M.; Hosoyama, H.; Nakazato, M.; JT-60 Team

2008-04-01

Aiming at optimization of current profile in high-β plasmas for higher confinement and stability, a real-time control system of the minimum of the safety factor (qmin) using the off-axis current drive has been developed. The off-axis current drive can raise the safety factor in the centre and help to avoid instability that limits the performance of the plasma. The system controls the injection power of lower-hybrid waves, and hence its off-axis driven current in order to control qmin. The real-time control of qmin is demonstrated in a high-β plasma, where qmin follows the temporally changing reference qmin,ref from 1.3 to 1.7. Applying the control to another high-β discharge (βN = 1.7, βp = 1.5) with m/n = 2/1 neo-classical tearing mode (NTM), qmin was raised above 2 and the NTM was suppressed. The stored energy increased by 16% with the NTM suppressed, since the resonant rational surface was eliminated. For the future use for current profile control, current density profile for off-axis neutral beam current drive (NBCD) is for the first time measured, using the motional Stark effect diagnostic. Spatially localized NBCD profile was clearly observed at the normalized minor radius ρ of about 0.6-0.8. The location was also confirmed by multi-chordal neutron emission profile measurement. The total amount of the measured beam driven current was consistent with the theoretical calculation using the ACCOME code. The CD location in the calculation was inward shifted than the measurement.

Enhancer Evolution across 20 Mammalian Species

PubMed Central

Villar, Diego; Berthelot, Camille; Aldridge, Sarah; Rayner, Tim F.; Lukk, Margus; Pignatelli, Miguel; Park, Thomas J.; Deaville, Robert; Erichsen, Jonathan T.; Jasinska, Anna J.; Turner, James M.A.; Bertelsen, Mads F.; Murchison, Elizabeth P.; Flicek, Paul; Odom, Duncan T.

2015-01-01

Summary The mammalian radiation has corresponded with rapid changes in noncoding regions of the genome, but we lack a comprehensive understanding of regulatory evolution in mammals. Here, we track the evolution of promoters and enhancers active in liver across 20 mammalian species from six diverse orders by profiling genomic enrichment of H3K27 acetylation and H3K4 trimethylation. We report that rapid evolution of enhancers is a universal feature of mammalian genomes. Most of the recently evolved enhancers arise from ancestral DNA exaptation, rather than lineage-specific expansions of repeat elements. In contrast, almost all liver promoters are partially or fully conserved across these species. Our data further reveal that recently evolved enhancers can be associated with genes under positive selection, demonstrating the power of this approach for annotating regulatory adaptations in genomic sequences. These results provide important insight into the functional genetics underpinning mammalian regulatory evolution. PMID:25635462

Assessment of trends in the electrochemical CO 2 reduction and H 2 evolution reactions on metal nanoparticles

DOE PAGES

Alfonso, Dominic R.; Kauffman, Douglas R.

2017-08-14

Here, we used density functional theory to investigate the electrochemical CO 2 reduction and competing hydrogen evolution reaction on model Au, Ag, Cu, Ir, Ni, Pd, Pt, and Rh nanoparticles. On the coinage metal, the free energy of adsorbed COOH, CO, and H intermediates generally becomes more favorable with decreasing particle size. This pattern was also observed on all transition metals with the binding of the intermediates observed to be stronger on almost all of these metals. Comparative studies of the reaction profile reveal that H 2 evolution is the first reaction to be energetically allowed at zero applied bias

Assessment of trends in the electrochemical CO 2 reduction and H 2 evolution reactions on metal nanoparticles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alfonso, Dominic R.; Kauffman, Douglas R.

Here, we used density functional theory to investigate the electrochemical CO 2 reduction and competing hydrogen evolution reaction on model Au, Ag, Cu, Ir, Ni, Pd, Pt, and Rh nanoparticles. On the coinage metal, the free energy of adsorbed COOH, CO, and H intermediates generally becomes more favorable with decreasing particle size. This pattern was also observed on all transition metals with the binding of the intermediates observed to be stronger on almost all of these metals. Comparative studies of the reaction profile reveal that H 2 evolution is the first reaction to be energetically allowed at zero applied bias

Evol and ProDy for bridging protein sequence evolution and structural dynamics

PubMed Central

Mao, Wenzhi; Liu, Ying; Chennubhotla, Chakra; Lezon, Timothy R.; Bahar, Ivet

2014-01-01

Correlations between sequence evolution and structural dynamics are of utmost importance in understanding the molecular mechanisms of function and their evolution. We have integrated Evol, a new package for fast and efficient comparative analysis of evolutionary patterns and conformational dynamics, into ProDy, a computational toolbox designed for inferring protein dynamics from experimental and theoretical data. Using information-theoretic approaches, Evol coanalyzes conservation and coevolution profiles extracted from multiple sequence alignments of protein families with their inferred dynamics. Availability and implementation: ProDy and Evol are open-source and freely available under MIT License from http://prody.csb.pitt.edu/. Contact: bahar@pitt.edu PMID:24849577

CF Metadata Conventions: Founding Principles, Governance, and Future Directions

NASA Astrophysics Data System (ADS)

Taylor, K. E.

2016-12-01

The CF Metadata Conventions define attributes that promote sharing of climate and forecasting data and facilitate automated processing by computers. The development, maintenance, and evolution of the conventions have mainly been provided by voluntary community contributions. Nevertheless, an organizational framework has been established, which relies on established rules and web-based discussion to ensure smooth (but relatively efficient) evolution of the standard to accommodate new types of data. The CF standard has been essential to the success of high-profile internationally-coordinated modeling activities (e.g, the Coupled Model Intercomparison Project). A summary of CF's founding principles and the prospects for its future evolution will be discussed.

Theory and discretization of ideal magnetohydrodynamic equilibria with fractal pressure profiles

NASA Astrophysics Data System (ADS)

Kraus, B. F.; Hudson, S. R.

2017-09-01

In three-dimensional ideal magnetohydrodynamics, closed flux surfaces cannot maintain both rational rotational-transform and pressure gradients, as these features together produce unphysical, infinite currents. A proposed set of equilibria nullifies these currents by flattening the pressure on sufficiently wide intervals around each rational surface. Such rational surfaces exist at every scale, which characterizes the pressure profile as self-similar and thus fractal. The pressure profile is approximated numerically by considering a finite number of rational regions and analyzed mathematically by classifying the irrational numbers that support gradients into subsets. Applying these results to a given rotational-transform profile in cylindrical geometry, we find magnetic field and current density profiles compatible with the fractal pressure.

Coastal retreat and shoreface profile variations in the Canadian Beaufort Sea

USGS Publications Warehouse

Hequette, A.; Barnes, P.W.

1990-01-01

The coastline of the southern Canadian Beaufort Sea consists primarily of unconsolidated bluffs. Although the sea is ice-free for 3 months of the year and wave energy is restricted by pack ice, the coast is undergoing regional retreat with erosion rates as high as 10 m a-1 in some locations. Simple and multiple regression analyses were carried out to determine the degree of correlation between the mean retreat rate measured at various locations and the different parameters that may control shoreline recession. Sediment texture, ground-ice content, cliff height, wave energy and shoreface gradient revealed medium to poor correlation with erosion rates, showing that the recessive evolution of the coastline can not be explained solely by wave-induced and subaerial processes. The comparison of nearshore echo-sounding records from 1987 with bathymetry from 1971 showed substantial erosion (up to 1 m) of the submarine profile between 12 and 15 m of water. There is strong evidence that this erosion has been caused by sea ice gouging on the seafloor. From depths of 5 to 9 m, accretion has taken place, possibly induced by ice-push processes, and inshore of the 5 m isobath wave and current erosion of the shoreface has occurred. These results suggest that the erosion of the inner shelf by ice gouging drives the erosion observed inshore on the coastal bluffs and nearshore zone as the shoreface profile strives for a state of dynamic equilibrium. ?? 1990.

A Fourier transform method for Vsin i estimations under nonlinear Limb-Darkening laws

DOE Office of Scientific and Technical Information (OSTI.GOV)

Levenhagen, R. S., E-mail: ronaldo.levenhagen@gmail.com

Star rotation offers us a large horizon for the study of many important physical issues pertaining to stellar evolution. Currently, four methods are widely used to infer rotation velocities, namely those related to line width calibrations, on the fitting of synthetic spectra, interferometry, and on Fourier transforms (FTs) of line profiles. Almost all of the estimations of stellar projected rotation velocities using the Fourier method in the literature have been addressed with the use of linear limb-darkening (LD) approximations during the evaluation of rotation profiles and their cosine FTs, which in certain cases, lead to discrepant velocity estimates. In thismore » work, we introduce new mathematical expressions of rotation profiles and their Fourier cosine transforms assuming three nonlinear LD laws—quadratic, square-root, and logarithmic—and study their applications with and without gravity-darkening (GD) and geometrical flattening (GF) effects. Through an analysis of He I models in the visible range accounting for both limb and GD, we find out that, for classical models without rotationally driven effects, all the Vsin i values are too close to each other. On the other hand, taking into account GD and GF, the Vsin i obtained with the linear law result in Vsin i values that are systematically smaller than those obtained with the other laws. As a rule of thumb, we apply these expressions to the FT method to evaluate the projected rotation velocity of the emission B-type star Achernar (α Eri).« less

The effect of electron cyclotron heating on density fluctuations at ion and electron scales in ITER baseline scenario discharges on the DIII-D tokamak

NASA Astrophysics Data System (ADS)

Marinoni, A.; Pinsker, R. I.; Porkolab, M.; Rost, J. C.; Davis, E. M.; Burrell, K. H.; Candy, J.; Staebler, G. M.; Grierson, B. A.; McKee, G. R.; Rhodes, T. L.; The DIII-D Team

2017-12-01

Experiments simulating the ITER baseline scenario on the DIII-D tokamak show that torque-free pure electron heating, when coupled to plasmas subject to a net co-current beam torque, affects density fluctuations at electron scales on a sub-confinement time scale, whereas fluctuations at ion scales change only after profiles have evolved to a new stationary state. Modifications to the density fluctuations measured by the phase contrast imaging diagnostic (PCI) are assessed by analyzing the time evolution following the switch-off of electron cyclotron heating (ECH), thus going from mixed beam/ECH to pure neutral beam heating at fixed βN . Within 20 ms after turning off ECH, the intensity of fluctuations is observed to increase at frequencies higher than 200 kHz in contrast, fluctuations at lower frequency are seen to decrease in intensity on a longer time scale, after other equilibrium quantities have evolved. Non-linear gyro-kinetic modeling at ion and electron scales scales suggest that, while the low frequency response of the diagnostic is consistent with the dominant ITG modes being weakened by the slow-time increase in flow shear, the high frequency response is due to prompt changes to the electron temperature profile that enhance electron modes and generate a larger heat flux and an inward particle pinch. These results suggest that electron heated regimes in ITER will feature multi-scale fluctuations that might affect fusion performance via modifications to profiles.

Dependence of GAMA galaxy halo masses on the cosmic web environment from 100 deg2 of KiDS weak lensing data

NASA Astrophysics Data System (ADS)

Brouwer, Margot M.; Cacciato, Marcello; Dvornik, Andrej; Eardley, Lizzie; Heymans, Catherine; Hoekstra, Henk; Kuijken, Konrad; McNaught-Roberts, Tamsyn; Sifón, Cristóbal; Viola, Massimo; Alpaslan, Mehmet; Bilicki, Maciej; Bland-Hawthorn, Joss; Brough, Sarah; Choi, Ami; Driver, Simon P.; Erben, Thomas; Grado, Aniello; Hildebrandt, Hendrik; Holwerda, Benne W.; Hopkins, Andrew M.; de Jong, Jelte T. A.; Liske, Jochen; McFarland, John; Nakajima, Reiko; Napolitano, Nicola R.; Norberg, Peder; Peacock, John A.; Radovich, Mario; Robotham, Aaron S. G.; Schneider, Peter; Sikkema, Gert; van Uitert, Edo; Verdoes Kleijn, Gijs; Valentijn, Edwin A.

2016-11-01

Galaxies and their dark matter haloes are part of a complex network of mass structures, collectively called the cosmic web. Using the tidal tensor prescription these structures can be classified into four cosmic environments: voids, sheets, filaments and knots. As the cosmic web may influence the formation and evolution of dark matter haloes and the galaxies they host, we aim to study the effect of these cosmic environments on the average mass of galactic haloes. To this end we measure the galaxy-galaxy lensing profile of 91 195 galaxies, within 0.039 < z < 0.263, from the spectroscopic Galaxy And Mass Assembly survey, using {˜ }100 ° ^2 of overlapping data from the Kilo-Degree Survey. In each of the four cosmic environments we model the contributions from group centrals, satellites and neighbouring groups to the stacked galaxy-galaxy lensing profiles. After correcting the lens samples for differences in the stellar mass distribution, we find no dependence of the average halo mass of central galaxies on their cosmic environment. We do find a significant increase in the average contribution of neighbouring groups to the lensing profile in increasingly dense cosmic environments. We show, however, that the observed effect can be entirely attributed to the galaxy density at much smaller scales (within 4 h-1 Mpc), which is correlated with the density of the cosmic environments. Within our current uncertainties we find no direct dependence of galaxy halo mass on their cosmic environment.

Dependence of L-mode confinement on the electron cyclotron power deposition profile in the TCV tokamak

NASA Astrophysics Data System (ADS)

Kirneva, N. A.; Razumova, K. A.; Pochelon, A.; Behn, R.; Coda, S.; Curchod, L.; Duval, B. P.; Goodman, T. P.; Labit, B.; Karpushov, A. N.; Rancic, M.; Sauter, O.; Silva, M.; TCV Team

2012-01-01

Scenarios with different electron cyclotron heating power profile distributions and widths were compared for the first time in experiments on the Tokamak à Configuration Variable (TCV). The heating profile was changed from shot to shot over a wide range from localized on-axis, with normalized minor radius half-width at half maximum σ1/2 ~ 0.1, up to a widely distributed heating power profile with σ1/2 ~ 0.4 and finally to a profile peaked far off-axis. The global confinement, MHD activity, density, temperature and electron pressure profile evolution were compared. In particular, the energy confinement properties of discharges with localized on-axis heating and distributed on-axis heating were very similar, with degradation close to that predicted by the ITER L-mode scaling; in the case of off-axis heating, on the other hand, the confinement degradation was even stronger.

Seeing May Not Mean Believing: Examining Students' Understandings & Beliefs in Evolution

ERIC Educational Resources Information Center

Cavallo, Ann M. L.; McCall, David

2008-01-01

Science education currently has incomplete understandings of potential relationships between students' beliefs in Nature of Science (NOS) and evolution, and how these beliefs may be related to scientific understandings of evolution. Because of evolution's prominence in science education, curricula decisions, and the future of science teaching and…

Current Status of Research in Teaching and Learning Evolution: I. Philosophical/Epistemological Issues

ERIC Educational Resources Information Center

Smith, Mike U.

2010-01-01

Scholarship that addresses teaching and learning about evolution has rapidly increased in recent years. This review of that scholarship first addresses the philosophical/epistemological issues that impinge on teaching and learning about evolution, including the proper philosophical goals of evolution instruction; the correlational and possibly…

Comparing Stellar Populations Across the Hubble Sequence

NASA Astrophysics Data System (ADS)

Loeffler, Shane; Kaleida, Catherine C.; Parkash, Vaishali

2015-01-01

Previous work (Jansen et al., 2000, Taylor et al., 2005) has revealed trends in the optical wavelength radial profiles of galaxies across the Hubble Sequence. Radial profiles offer insight into stellar populations, metallicity, and dust concentrations, aspects which are deeply tied to the individual evolution of a galaxy. The Nearby Field Galaxy Survey (NFGS) provides a sampling of nearby galaxies that spans the range of morphological types, luminosities, and masses. Currently available NFGS data includes optical radial surface profiles and spectra of 196 nearby galaxies. We aim to look for trends in the infrared portion of the spectrum for these galaxies, but find that existing 2MASS data is not sufficiently deep. Herein, we expand the available data for the NGFS galaxy IC1639 deeper into the infrared using new data taken with the Infrared Sideport Imager (ISPI) on the 4-m Blanco Telescope at the Cerro Tololo Inter-American Observatory (CTIO) in Chile. Images taken in J, H, and Ks were reduced using standard IRAF and IDL procedures. Photometric calibrations were completed by using the highest quality (AAA) 2MASS stars in the field. Aperture photometry was then performed on the galaxy and radial profiles of surface brightness, J-H color, and H-Ks color were produced. For IC1639, the new ISPI data reveals flat color gradients and surface brightness gradients that decrease with radius. These trends reveal an archetypal elliptical galaxy, with a relatively homogeneous stellar population, stellar density decreasing with radius, and little-to-no obscuration by dust. We have obtained ISPI images for an additional 8 galaxies, and further reduction and analysis of these data will allow for investigation of radial trends in the infrared for galaxies across the Hubble Sequence.

Upper ocean moored current and density profiler applied to winter conditions near Bermuda

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eriksen, C.C.; Dahlen, J.M.; Shillingford, J.T. Jr.

1982-09-20

A new moored instrument which makes repeated high vertical resolution profiles of current, temperature, and salinity in the upper ocean over extended periods was used to observe midwinter conditions near Bermuda. The operation and performance of the instrument, called the profiling current meter (PCM), in the surface wave environment of winter storms is reported here. The PCM profiles along the upper portion of a slightly subsurface mooring by adjusting its buoyancy under computer control. This design decouples the instrument from vertical motions of the mooring induced by surface waves, so that its electromagnetic current sensor operates in a favorable mean-to-fluctuatingmore » flow regime. Current, temperature, and electrical conductivity are (vector) averaged into contiguous preselected bins several meters wide over the possible profile range of 20- to 250-m depth. The PCM is capable of collecting 1000--4000 profiles in a 6- to 12-month period, depending on depth range and ambient currents. A variety of baroclinic motions are evident in the Bermuda observations. Upper ocean manifestations of both Kelvin and superinertial island-trapped waves dominate longshore currents. Vertical coherence of onshore current and temperature suggest that internal wave vertical wave number energy distribution is independent of frequency but modified by island bathymetry. Kinetic energy in shear integrated over a 115.6-m-thick layer in the upper ocean is limited to values less than or equal to the potential energy required to mix the existing stratification. Mixing events occur when kinetic energy associated with shear drives the bulk Richardson number (defined by the ratio of energy integrals over the range profiles) to unity, where it remains while shear and stratification disappear together.« less

Voltage Profiles for the Lead-Acid Cell: Experiment and Theory

NASA Astrophysics Data System (ADS)

Haaser, Robert; Ross, Joseph H.; Saslow, Wayne M.

1999-10-01

Using platinum electrodes we have measured the voltage profile in space across a lead-acid cell, for slow, steady processes. Once in the slow, steady charge or discharge regime, the experimental voltage profile is quadratic, as predicted by recent theory.^1 However, even without current flow, in the slow, steady regime the voltage profile also is quadratic, rather than a straight line with zero slope. This other quadratic voltage profile is due to nonfaradaic chemical reactions at the working electrodes, which slowly discharge the cell without drawing any current. Such a quadratic voltage profile follows from theory. The voltage jump profiles (change in voltage profile on sudden change in current) on starting or ending a charge or discharge, are linear in space, with slope consistent with the measured resistivity of battery acid. This is as expected if charge on the electrodes, but not in the electrolyte, has time to move. 1. W.M.Saslow, Phys.Rev.Lett.76, 4849 (1996).

Deriving strain from crystallographic preferred orientation for a ductile shear zone in north western Turkey.

NASA Astrophysics Data System (ADS)

Farrell, K.; Lloyd, G. E. E.; Wallis, D.; Phillips, R. J.

2015-12-01

Understanding the behaviour of active continental-scale fault zones at depth, and in particular how displacements observed at the Earth's surface are accommodated through the crust, is crucial to improving understanding of the earthquake cycle. This behaviour can be inferred by study of exhumed portions of ductile shear zones using methods such as recording strain profile(s) across the fault zone. However, due to the nature of mid-crustal rocks, strain markers tend to be rare and/or discontinuously distributed. The intensity (I) of crystallographic preferred orientation (CPO) of deformed minerals provides a proxy for strain that is continuous across fault zones. CPO are collected via electron back scattered diffraction in the scanning electron microscope. The strength of the CPO can be quantified using eigenvalue-based intensity parameters. Calibration of intensity with strain is achieved via comparison with visco-plastic self-consistency models of CPO evolution, although the temperature-dependent critical resolved shear stresses of potential crystal slip systems must be known. As an example, we consider the dextral strike-slip Eskişehir shear zone, NW Turkey, which was active during the Oligocene and accommodated ~100km of displacement, including a component of late oblique-normal slip. An exhumed mid-crustal section of this fault zone is exposed in the Uludağ Massif, comprising of high-grade metamorphic rocks of the Uludağ Group, intruded by the Central and South Uludağ granites. Sample transects focussed on the pure calcic marbles that dominate the stratigraphy. Fortunately, the availability of experimental data for calcite crystal slip behaviour at different temperatures makes the application of the CPO intensity strain proxy method relatively straightforward. The Uludağ Massif and Eskişehir shear zone provide a field based analogue for the ductile shear zone beneath the currently active North Anatolian Fault. The results of our CPO intensity-based strain profiles allow us to speculate on the current behaviour of the North Anatolian Fault, a major seismogenic feature, at depth.

In-situ study of the gas-phase composition and temperature of an intermediate-temperature solid oxide fuel cell anode surface fed by reformate natural gas

NASA Astrophysics Data System (ADS)

Santoni, F.; Silva Mosqueda, D. M.; Pumiglia, D.; Viceconti, E.; Conti, B.; Boigues Muñoz, C.; Bosio, B.; Ulgiati, S.; McPhail, S. J.

2017-12-01

An innovative experimental setup is used for in-depth and in-operando characterization of solid oxide fuel cell anodic processes. This work focuses on the heterogeneous reactions taking place on a 121 cm2 anode-supported cell (ASC) running with a H2, CH4, CO2, CO and steam gas mixture as a fuel, using an operating temperature of 923 K. The results have been obtained by analyzing the gas composition and temperature profiles along the anode surface in different conditions: open circuit voltage (OCV) and under two different current densities, 165 mA cm-2 and 330 mA cm-2, corresponding to 27% and 54% of fuel utilization, respectively. The gas composition and temperature analysis results are consistent, allowing to monitor the evolution of the principal chemical and electrochemical reactions along the anode surface. A possible competition between CO2 and H2O in methane internal reforming is shown under OCV condition and low current density values, leading to two different types of methane reforming: Steam Reforming and Dry Reforming. Under a current load of 40 A, the dominance of exothermic reactions leads to a more marked increase of temperature in the portion of the cell close to the inlet revealing that current density is not uniform along the anode surface.

Wide-band profile domain pulsar timing analysis

NASA Astrophysics Data System (ADS)

Lentati, L.; Kerr, M.; Dai, S.; Hobson, M. P.; Shannon, R. M.; Hobbs, G.; Bailes, M.; Bhat, N. D. Ramesh; Burke-Spolaor, S.; Coles, W.; Dempsey, J.; Lasky, P. D.; Levin, Y.; Manchester, R. N.; Osłowski, S.; Ravi, V.; Reardon, D. J.; Rosado, P. A.; Spiewak, R.; van Straten, W.; Toomey, L.; Wang, J.; Wen, L.; You, X.; Zhu, X.

2017-04-01

We extend profile domain pulsar timing to incorporate wide-band effects such as frequency-dependent profile evolution and broad-band shape variation in the pulse profile. We also incorporate models for temporal variations in both pulse width and in the separation in phase of the main pulse and interpulse. We perform the analysis with both nested sampling and Hamiltonian Monte Carlo methods. In the latter case, we introduce a new parametrization of the posterior that is extremely efficient in the low signal-to-noise regime and can be readily applied to a wide range of scientific problems. We apply this methodology to a series of simulations, and to between seven and nine years of observations for PSRs J1713+0747, J1744-1134 and J1909-3744 with frequency coverage that spans 700-3600 Mhz. We use a smooth model for profile evolution across the full frequency range, and compare smooth and piecewise models for the temporal variations in dispersion measure (DM). We find that the profile domain framework consistently results in improved timing precision compared to the standard analysis paradigm by as much as 40 per cent for timing parameters. Incorporating smoothness in the DM variations into the model further improves timing precision by as much as 30 per cent. For PSR J1713+0747, we also detect pulse shape variation uncorrelated between epochs, which we attribute to variation intrinsic to the pulsar at a level consistent with previously published analyses. Not accounting for this shape variation biases the measured arrival times at the level of ˜30 ns, the same order of magnitude as the expected shift due to gravitational waves in the pulsar timing band.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cegla, H. M.; Watson, C. A.; Oshagh, M.

Observations of the Rossiter–McLaughlin (RM) effect provide information on star–planet alignments, which can inform planetary migration and evolution theories. Here, we go beyond the classical RM modeling and explore the impact of a convective blueshift that varies across the stellar disk and non-Gaussian stellar photospheric profiles. We simulated an aligned hot Jupiter with a four-day orbit about a Sun-like star and injected center-to-limb velocity (and profile shape) variations based on radiative 3D magnetohydrodynamic simulations of solar surface convection. The residuals between our modeling and classical RM modeling were dependent on the intrinsic profile width and v sin i; the amplitudemore » of the residuals increased with increasing v sin i and with decreasing intrinsic profile width. For slowly rotating stars the center-to-limb convective variation dominated the residuals (with amplitudes of 10 s of cm s{sup −1} to ∼1 m s{sup −1}); however, for faster rotating stars the dominant residual signature was due a non-Gaussian intrinsic profile (with amplitudes from 0.5 to 9 m s{sup −1}). When the impact factor was 0, neglecting to account for the convective center-to-limb variation led to an uncertainty in the obliquity of ∼10°–20°, even though the true v sin i was known. Additionally, neglecting to properly model an asymmetric intrinsic profile had a greater impact for more rapidly rotating stars (e.g., v sin i = 6 km s{sup −1}) and caused systematic errors on the order of ∼20° in the measured obliquities. Hence, neglecting the impact of stellar surface convection may bias star–planet alignment measurements and consequently theories on planetary migration and evolution.« less

Evaluation of the Consolidation of Real Property Maintenance Activities (RPMA) in the U.S. Army Engineer Activity, Capital Area (USAEA, CA). Volume 2. Evaluation

DTIC Science & Technology

1990-03-01

MANAGEMENT ................................... 62 Scope of Current Operations 62 Evolution of the Original RMD Plan 66 Financial Management Support Operations...Scope of Current Operations 76 Evolution of SMD From IPG Plan 78 SMD Support to RPMA 81 Efficiency of Supply Service 85 7 PROCUREMENT AND CONTRACTING...RPMA are to be realized. This chapter investigates these controls in terms of scope, evolution , operations (a functional assessment), and efficiency

Time evolving bed shear stress due the passage of gravity currents estimated with ADVP velocity measurements

NASA Astrophysics Data System (ADS)

Zordan, Jessica; Schleiss, Anton J.; Franca, Mário J.

2016-04-01

Density or gravity currents are geophysical flows driven by density gradients between two contacting fluids. The physical trigger mechanism of these phenomena lays in the density differences which may be caused by differences in the temperature, dissolved substances or concentration of suspended sediments. Saline density currents are capable to entrain bed sediments inducing signatures in the bottom of sedimentary basins. Herein, saline density currents are reproduced in laboratory over a movable bed. The experimental channel is of the lock-exchange type, it is 7.5 m long and 0.3 m wide, divided into two sections of comparable volumes by a sliding gate. An upstream reach serves as a head tank for the dense mixture; the current propagates through a downstream reach where the main measurements are made. Downstream of the channel a tank exist to absorb the reflection of the current and thus artifacts due to the limited length of the channel. High performance thermoplastic polyurethane simulating fine sediments forms the movable bed. Measures of 3D instantaneous velocities will be made with the use of the non-intrusive technique of the ADV (Acoustic Doppler Current Profiler). With the velocity measurements, the evolution in time of the channel-bed shear stress due the passage of gravity currents is estimated. This is in turn related to the observed erosion and to such parameters determinant for the dynamics of the current as initial density difference, lock length and channel slope. This work was funded by the ITN-Programme (Marie Curie Actions) of the European Union's Seventh Framework Programme FP7-PEOPLE-2013-ITN under REA grant agreement n_607394-SEDITRANS.

Effects of Land Surface Heterogeneity on Simulated Boundary-Layer Structures from the LES to the Mesoscale

NASA Astrophysics Data System (ADS)

Poll, Stefan; Shrestha, Prabhakar; Simmer, Clemens

2017-04-01

Land heterogeneity influences the atmospheric boundary layer (ABL) structure including organized (secondary) circulations which feed back on land-atmosphere exchange fluxes. Especially the latter effects cannot be incorporated explicitly in regional and climate models due to their coarse computational spatial grids, but must be parameterized. Current parameterizations lead, however, to uncertainties in modeled surface fluxes and boundary layer evolution, which feed back to cloud initiation and precipitation. This study analyzes the impact of different horizontal grid resolutions on the simulated boundary layer structures in terms of stability, height and induced secondary circulations. The ICON-LES (Icosahedral Nonhydrostatic in LES mode) developed by the MPI-M and the German weather service (DWD) and conducted within the framework of HD(CP)2 is used. ICON is dynamically downscaled through multiple scales of 20 km, 7 km, 2.8 km, 625 m, 312 m, and 156 m grid spacing for several days over Germany and partial neighboring countries for different synoptic conditions. We examined the entropy spectrum of the land surface heterogeneity at these grid resolutions for several locations close to measurement sites, such as Lindenberg, Jülich, Cabauw and Melpitz, and studied its influence on the surface fluxes and the evolution of the boundary layer profiles.

Studies of Ion Beam Charge Neutralization by Ferroelectric Plasma Sources

NASA Astrophysics Data System (ADS)

Stepanov, A.; Gilson, E. P.; Grisham, L.; Davidson, R. C.

2013-10-01

Space-charge forces limit the possible transverse compression of high perveance ion beams that are used in ion-beam-driven high energy density physics applications; the minimum radius to which a beam can be focused is an increasing function of perveance. The limit can be overcome if a plasma is introduced in the beam path between the focusing element and the target in order to neutralize the space charge of the beam. This concept has been implemented on the Neutralized Drift Compression eXperiment (NDCX) at LBNL using Ferroelectric Plasma Sources (FEPS). In our experiment at PPPL, we propagate a perveance-dominated ion beam through a FEPS to study the effect of the neutralizing plasma on the beam envelope and its evolution in time. A 30-60 keV space-charge-dominated Argon beam is focused with an Einzel lens into a FEPS located at the beam waist. The beam is intercepted downstream from the FEPS by a movable Faraday cup that provides time-resolved 2D current density profiles of the beam spot on target. We report results on: (a) dependence of charge neutralization on FEPS plasma density; (b) effects on beam emittance, and (c) time evolution of the beam envelope after the FEPS pulse. Research supported by the U.S. Department of Energy.

Evidence for frozen melts in the mid-lithosphere detected from active-source seismic data.

PubMed

Ohira, Akane; Kodaira, Shuichi; Nakamura, Yasuyuki; Fujie, Gou; Arai, Ryuta; Miura, Seiichi

2017-11-17

The interactions of the lithospheric plates that form the Earth's outer shell provide much of the evidentiary basis for modern plate tectonic theory. Seismic discontinuities in the lithosphere arising from mantle convection and plate motion provide constraints on the physical and chemical properties of the mantle that contribute to the processes of formation and evolution of tectonic plates. Seismological studies during the past two decades have detected seismic discontinuities within the oceanic lithosphere in addition to that at the lithosphere-asthenosphere boundary (LAB). However, the depth, distribution, and physical properties of these discontinuities are not well constrained, which makes it difficult to use seismological data to examine their origin. Here we present new active-source seismic data acquired along a 1,130 km profile across an old Pacific plate (148-128 Ma) that show oceanic mid-lithosphere discontinuities (oceanic MLDs) distributed 37-59 km below the seafloor. The presence of the oceanic MLDs suggests that frozen melts that accumulated at past LABs have been preserved as low-velocity layers within the current mature lithosphere. These observations show that long-offset, high-frequency, active-source seismic data can be used to image mid-lithospheric structure, which is fundamental to understanding the formation and evolution of tectonic plates.

Analysis of volatile organic compounds released from the decay of surrogate human models simulating victims of collapsed buildings by thermal desorption-comprehensive two-dimensional gas chromatography-time of flight mass spectrometry.

PubMed

Agapiou, A; Zorba, E; Mikedi, K; McGregor, L; Spiliopoulou, C; Statheropoulos, M

2015-07-09

Field experiments were devised to mimic the entrapment conditions under the rubble of collapsed buildings aiming to investigate the evolution of volatile organic compounds (VOCs) during the early dead body decomposition stage. Three pig carcasses were placed inside concrete tunnels of a search and rescue (SAR) operational field terrain for simulating the entrapment environment after a building collapse. The experimental campaign employed both laboratory and on-site analytical methods running in parallel. The current work focuses only on the results of the laboratory method using thermal desorption coupled to comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry (TD-GC×GC-TOF MS). The flow-modulated TD-GC×GC-TOF MS provided enhanced separation of the VOC profile and served as a reference method for the evaluation of the on-site analytical methods in the current experimental campaign. Bespoke software was used to deconvolve the VOC profile to extract as much information as possible into peak lists. In total, 288 unique VOCs were identified (i.e., not found in blank samples). The majority were aliphatics (172), aromatics (25) and nitrogen compounds (19), followed by ketones (17), esters (13), alcohols (12), aldehydes (11), sulfur (9), miscellaneous (8) and acid compounds (2). The TD-GC×GC-TOF MS proved to be a sensitive and powerful system for resolving the chemical puzzle of above-ground "scent of death". Copyright © 2015 Elsevier B.V. All rights reserved.

What Can Modern River Profiles Tell Us about Orogenic Processes and Orogen Evolution?

NASA Astrophysics Data System (ADS)

Whipple, K. X.

2008-12-01

Numerous lines of evidence from theory, numerical simulations, and physical experiments suggest that orogen evolution is strongly coupled to atmospheric processes through the interrelationships among climate, topography, and erosion rate. In terms of orogenic processes and orogen evolution, these relationships are most important at the regional scale (mean topographic gradient, mean relief above surrounding plains) largely because crustal deformation is most sensitive to erosional unloading averaged over sufficiently long wavelengths. For this reason, and because above moderate erosion rates (> 0.2 mm/yr) hillslope form becomes decoupled from erosion rate, attention has focused on the river network, and even on particularly large rivers. We now have data that demonstrates a monotonic relationship between erosion rate and the channel steepness index (slope normalized for differences in drainage area) in a variety of field settings. Consequently, study of modern river profiles can yield useful information on recent and on-going patterns of rock uplift. It is not yet possible, however, to quantitatively isolate expected climatic and lithologic influences on this relationship. A combination of field studies and theoretical analyses are beginning to reveal the timescale of landscape response, and thus the topographic memory of past conditions. At orogen scale, river profile response to a change in rock uplift rate is on the order of 1-10 Myr. Because of these long response times, the modern profiles of large rivers and their major tributaries can potentially preserve an interpretable record of rock uplift rates since the Miocene and are insensitive to short-term climatic fluctuations. Only significant increases in rock uplift rate, however, are likely to leave a clear topographic signature. Strategies have been developed to differentiate between temporal and spatial (tectonic, climatic, or lithologic) influences on channel profile form, especially where spatially distributed data on recent incision rates is available. A more difficult question is one of cause and effect. Only in some circumstances is it possible to determine whether rivers are steep in response to localized rock uplift or whether localized rock uplift occurs in response to rapidly incising steep rivers.

Explanatory Parent-Child Conversation Predominates at an Evolution Exhibit

ERIC Educational Resources Information Center

Tare, Medha; French, Jason; Frazier, Brandy N.; Diamond, Judy; Evans, E. Margaret

2011-01-01

To investigate how parents support children's learning at an exhibit on evolution, the conversations of 12 families were recorded, transcribed, and coded (6,263 utterances). Children (mean age 9.6 years) and parents visited Explore Evolution, which conveyed current research about the evolution of seven organisms. Families were engaged with the…

Radio outbursts in extragalactic sources

NASA Astrophysics Data System (ADS)

Kinzel, Wayne Morris

Three aspects of the flux density variability of extragalactic radio sources were examined: millimeter wavelength short timescale variability, the spectral evolution of outbursts, and whether the outbursts are periodically spaced. Observations of extragalactic radio sources were conducted using the Five College Radio Astronomy Observatory between January and June 1985 at 88.2 GHz and during June and July 1985 at 40.0 GHz. Many of the sources exhibited significant flux density variations during the observing span. In addition, the most rapid variations observed were comparable with those reported in previous works. Two sources, 0355+50 and OJ287, both exhibited outbursts whose rise and fall timescales were less than a month. An anomalous flux density dropout was observed in 3C446 and was interpreted as an occultation event. Data at five frequencies between 2.7 and 89.6 GHz from the Dent-Balonek monitoring program were used to investigate the spectral evolution of eight outbursts. Outburst profile fitting was used to deconvolve the individual outbursts from one another at each frequency. The fit profiles were used to generate multiple epoch spectra to investigate the evolution of the outbursts. A phase residual minimization method was used to examine four sources for periodic behavior.

Theory and discretization of ideal magnetohydrodynamic equilibria with fractal pressure profiles

DOE PAGES

Kraus, B. F.; Hudson, S. R.

2017-09-29

In three-dimensional ideal magnetohydrodynamics, closed flux surfaces cannot maintain both rational rotational-transform and pressure gradients, as these features together produce unphysical, infinite currents. A proposed set of equilibria nullifies these currents by flattening the pressure on sufficiently wide intervals around each rational surface. Such rational surfaces exist at every scale, which characterizes the pressure profile as self-similar and thus fractal. The pressure profile is approximated numerically by considering a finite number of rational regions and analyzed mathematically by classifying the irrational numbers that support gradients into subsets. As a result, applying these results to a given rotational-transform profile in cylindricalmore » geometry, we find magnetic field and current density profiles compatible with the fractal pressure.« less

Theory and discretization of ideal magnetohydrodynamic equilibria with fractal pressure profiles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kraus, B. F.; Hudson, S. R.

In three-dimensional ideal magnetohydrodynamics, closed flux surfaces cannot maintain both rational rotational-transform and pressure gradients, as these features together produce unphysical, infinite currents. A proposed set of equilibria nullifies these currents by flattening the pressure on sufficiently wide intervals around each rational surface. Such rational surfaces exist at every scale, which characterizes the pressure profile as self-similar and thus fractal. The pressure profile is approximated numerically by considering a finite number of rational regions and analyzed mathematically by classifying the irrational numbers that support gradients into subsets. As a result, applying these results to a given rotational-transform profile in cylindricalmore » geometry, we find magnetic field and current density profiles compatible with the fractal pressure.« less

Brownian motion of massive black hole binaries and the final parsec problem

NASA Astrophysics Data System (ADS)

Bortolas, E.; Gualandris, A.; Dotti, M.; Spera, M.; Mapelli, M.

2016-09-01

Massive black hole binaries (BHBs) are expected to be one of the most powerful sources of gravitational waves in the frequency range of the pulsar timing array and of forthcoming space-borne detectors. They are believed to form in the final stages of galaxy mergers, and then harden by slingshot ejections of passing stars. However, evolution via the slingshot mechanism may be ineffective if the reservoir of interacting stars is not readily replenished, and the binary shrinking may come to a halt at roughly a parsec separation. Recent simulations suggest that the departure from spherical symmetry, naturally produced in merger remnants, leads to efficient loss cone refilling, preventing the binary from stalling. However, current N-body simulations able to accurately follow the evolution of BHBs are limited to very modest particle numbers. Brownian motion may artificially enhance the loss cone refilling rate in low-N simulations, where the binary encounters a larger population of stars due its random motion. Here we study the significance of Brownian motion of BHBs in merger remnants in the context of the final parsec problem. We simulate mergers with various particle numbers (from 8k to 1M) and with several density profiles. Moreover, we compare simulations where the BHB is fixed at the centre of the merger remnant with simulations where the BHB is free to random walk. We find that Brownian motion does not significantly affect the evolution of BHBs in simulations with particle numbers in excess of one million, and that the hardening measured in merger simulations is due to collisionless loss cone refilling.

New Analysis of Solute Drag in AA5754 by Precise Determination of Point Defect Generation and the Orowan Relation

NASA Astrophysics Data System (ADS)

Diak, Brad J.; Penlington, Alex; Saimoto, Shig

Serrated deformation in Al-Mg alloys creates problems that affect consumer product acceptability. This effect is usually attributed to the Portevin-LeChâtelier effect. In this study the inverse PLC effect due to solute drag on moving dislocations is examined in AA5754. The drag mechanism is dependent on the diffusivity of the solute which is in-turn dependent on the point defect evolution during deformation. Experimental determination of the parabolic James-Barnett drag profile by strain rate change experiments indicates the peak stress is centered at 1.5×10-9m/s, which requires a mechanical formation energy for vacancies of 0.4eV/at. A new slip-based constitutive relation was used to determine the evolution of vacancy volume fraction with deformation with strain, which is greater than the volume fraction of vacancies predicted by the solute drag profile.

Evolution in Cloud Population Statistics of the MJO: From AMIE Field Observations to Global-Cloud Permitting Models Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kollias, Pavlos

This is a multi-institutional, collaborative project using a three-tier modeling approach to bridge field observations and global cloud-permitting models, with emphases on cloud population structural evolution through various large-scale environments. Our contribution was in data analysis for the generation of high value cloud and precipitation products and derive cloud statistics for model validation. There are two areas in data analysis that we contributed: the development of a synergistic cloud and precipitation cloud classification that identify different cloud (e.g. shallow cumulus, cirrus) and precipitation types (shallow, deep, convective, stratiform) using profiling ARM observations and the development of a quantitative precipitation ratemore » retrieval algorithm using profiling ARM observations. Similar efforts have been developed in the past for precipitation (weather radars), but not for the millimeter-wavelength (cloud) radar deployed at the ARM sites.« less

Evolution of Edge Pedestal Profiles Over the L-H Transition

NASA Astrophysics Data System (ADS)

Sayer, M. S.; Stacey, W. M.; Floyd, J. P.; Groebner, R. J.

2012-10-01

The detailed time evolution of thermal diffusivities, electromagnetic forces, pressure gradients, particle pinch and momentum transport frequencies (which determine the diffusion coefficient) have been analyzed during the L-H transition in a DIII-D discharge. Density, temperature, rotation velocity and electric field profiles at times just before and after the L-H transition are analyzed in terms of these quantities. The analysis is based on the fluid particle balance, energy balance, force balance and heat conduction equations, as in Ref. [1], but with much greater time resolution and with account for thermal ion orbit loss. The variation of diffusive and non-diffusive transport over the L-H transition is determined from the variation in the radial force balance (radial electric field, VxB force, and pressure gradient) and the variation in the interpreted diffusive transport coefficients. 6pt [1] W.M. Stacey and R.J. Groebner, Phys. Plasmas 17, 112512 (2010).

Profiles of Childhood Trauma in Patients with Alcohol Dependence and Their Associations with Addiction-Related Problems.

PubMed

Lotzin, Annett; Haupt, Lena; von Schönfels, Julia; Wingenfeld, Katja; Schäfer, Ingo

2016-03-01

The high occurrence of childhood trauma in individuals with alcohol dependence is well-recognized. Nevertheless, researchers have rarely studied which types of childhood trauma often co-occur and how these combinations of different types and severities of childhood trauma are related to the patients' current addiction-related problems. We aimed to identify childhood trauma profiles in patients with alcohol dependence and examined relations of these trauma profiles with the patients' current addiction-related problems. In 347 alcohol-dependent patients, 5 types of childhood trauma (sexual abuse, physical abuse, emotional abuse, emotional neglect, and physical neglect) were measured using the Childhood Trauma Questionnaire. Childhood trauma profiles were identified using cluster analysis. The patients' current severity of addiction-related problems was assessed using the European Addiction Severity Index. We identified 6 profiles that comprised different types and severities of childhood trauma. The patients' trauma profiles predicted the severity of addiction-related problems in the domains of psychiatric symptoms, family relationships, social relationships, and drug use. Childhood trauma profiles may provide more useful information about the patient's risk of current addiction-related problems than the common distinction between traumatized versus nontraumatized patients. Copyright © 2016 by the Research Society on Alcoholism.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, W. H.; HEDPS and CAPT, Peking University, Beijing 100871; Wang, L. F.

In this research, the temporal evolution of the bubble tip velocity in Rayleigh-Taylor instability (RTI) at arbitrary Atwood numbers and different initial perturbation velocities with a discontinuous profile in irrotational, incompressible, and inviscid fluids (i.e., classical RTI) is investigated. Potential models from Layzer [Astrophys. J. 122, 1 (1955)] and perturbation velocity potentials from Goncharov [Phys. Rev. Lett. 88, 134502 (2002)] are introduced. It is found that the temporal evolution of bubble tip velocity [u(t)] depends essentially on the initial perturbation velocity [u(0)]. First, when the u(0)

Current source density analysis of the hippocampal theta rhythm: associated sustained potentials and candidate synaptic generators.

PubMed

Brankack, J; Stewart, M; Fox, S E

1993-07-02

Single-electrode depth profiles of the hippocampal EEG were made in urethane-anesthetized rats and rats trained in an alternating running/drinking task. Current source density (CSD) was computed from the voltage as a function of depth. A problem inherent to AC-coupled profiles was eliminated by incorporating sustained potential components of the EEG. 'AC' profiles force phasic current sinks to alternate with current sources at each lamina, changing the magnitude and even the sign of the computed membrane current. It was possible to include DC potentials in the profiles from anesthetized rats by using glass micropipettes for recording. A method of 'subtracting' profiles of the non-theta EEG from theta profiles was developed as an approach to including sustained potentials in recordings from freely-moving animals implanted with platinum electrodes. 'DC' profiles are superior to 'AC' profiles for analysis of EEG activity because 'DC'-CSD values can be considered correct in sign and more closely represent the actual membrane current magnitudes. Since hippocampal inputs are laminated, CSD analysis leads to straightforward predictions of the afferents involved. Theta-related activity in afferents from entorhinal neurons, hippocampal interneurons and ipsi- and contralateral hippocampal pyramids all appear to contribute to sources and sinks in CA1 and the dentate area. The largest theta-related generator was a sink at the fissure, having both phasic and tonic components. This sink may reflect activity in afferents from the lateral entorhinal cortex. The phase of the dentate mid-molecular sink suggests that medial entorhinal afferents drive the theta-related granule and pyramidal cell firing. The sustained components may be simply due to different average rates of firing during theta rhythm than during non-theta EEG in afferents whose firing rates are also phasically modulated.

Fingering convection induced by atomic diffusion in stars: 3D numerical computations and applications to stellar models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zemskova, Varvara; Garaud, Pascale; Deal, Morgan

2014-11-10

Iron-rich layers are known to form in the stellar subsurface through a combination of gravitational settling and radiative levitation. Their presence, nature, and detailed structure can affect the excitation process of various stellar pulsation modes and must therefore be modeled carefully in order to better interpret Kepler asteroseismic data. In this paper, we study the interplay between atomic diffusion and fingering convection in A-type stars, as well as its role in the establishment and evolution of iron accumulation layers. To do so, we use a combination of three-dimensional idealized numerical simulations of fingering convection (which neglect radiative transfer and complexmore » opacity effects) and one-dimensional realistic stellar models. Using the three-dimensional simulations, we first validate the mixing prescription for fingering convection recently proposed by Brown et al. (within the scope of the aforementioned approximation) and identify what system parameters (total mass of iron, iron diffusivity, thermal diffusivity, etc.) play a role in the overall evolution of the layer. We then implement the Brown et al. prescription in the Toulouse-Geneva Evolution Code to study the evolution of the iron abundance profile beneath the stellar surface. We find, as first discussed by Théado et al., that when the concurrent settling of helium is ignored, this accumulation rapidly causes an inversion in the mean molecular weight profile, which then drives fingering convection. The latter mixes iron with the surrounding material very efficiently, and the resulting iron layer is very weak. However, taking helium settling into account partially stabilizes the iron profile against fingering convection, and a large iron overabundance can accumulate. The opacity also increases significantly as a result, and in some cases it ultimately triggers dynamical convection. The direct effects of radiative acceleration on the dynamics of fingering convection (especially in the nonlinear regime) remain to be added in the future to improve the quantitative predictions of the model.« less

Heat stress differentially modifies ethylene biosynthesis and signaling in pea floral and fruit tissues.

PubMed

Savada, Raghavendra P; Ozga, Jocelyn A; Jayasinghege, Charitha P A; Waduthanthri, Kosala D; Reinecke, Dennis M

2017-10-01

Ethylene biosynthesis is regulated in reproductive tissues in response to heat stress in a manner to optimize resource allocation to pollinated fruits with developing seeds. High temperatures during reproductive development are particularly detrimental to crop fruit/seed production. Ethylene plays vital roles in plant development and abiotic stress responses; however, little is known about ethylene's role in reproductive tissues during development under heat stress. We assessed ethylene biosynthesis and signaling regulation within the reproductive and associated tissues of pea during the developmental phase that sets the stage for fruit-set and seed development under normal and heat-stress conditions. The transcript abundance profiles of PsACS [encode enzymes that convert S-adenosyl-L-methionine to 1-aminocyclopropane-1-carboxylic acid (ACC)] and PsACO (encode enzymes that convert ACC to ethylene), and ethylene evolution were developmentally, environmentally, and tissue-specifically regulated in the floral/fruit/pedicel tissues of pea. Higher transcript abundance of PsACS and PsACO in the ovaries, and PsACO in the pedicels was correlated with higher ethylene evolution and ovary senescence and pedicel abscission in fruits that were not pollinated under control temperature conditions. Under heat-stress conditions, up-regulation of ethylene biosynthesis gene expression in pre-pollinated ovaries was also associated with higher ethylene evolution and lower retention of these fruits. Following successful pollination and ovule fertilization, heat-stress modified PsACS and PsACO transcript profiles in a manner that suppressed ovary ethylene evolution. The normal ethylene burst in the stigma/style and petals following pollination was also suppressed by heat-stress. Transcript abundance profiles of ethylene receptor and signaling-related genes acted as qualitative markers of tissue ethylene signaling events. These data support the hypothesis that ethylene biosynthesis is regulated in reproductive tissues in response to heat stress to modulate resource allocation dynamics.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rahmani, N.; Dariani, R. S., E-mail: dariani@alzahra.ac.ir

Porous silicon films with porosity ranging from 42% to 77% were fabricated by electrochemical anodization under different current density. We used atomic force microscopy and dynamic scaling theory for deriving the surface roughness profile and processing the topography of the porous silicon layers, respectively. We first compared the topography of bare silicon surface with porous silicon and then studied the effect of the porosity of porous silicon films on their scaling behavior by using their self-affinity nature. Our work demonstrated that silicon compared to the porous silicon films has the highest Hurst parameter, indicating that the formation of porous layermore » due to the anodization etching of silicon surface leads to an increase of its roughness. Fractal analysis revealed that the evolution of the nanocrystallites’ fractal dimension along with porosity. Also, we found that both interface width and Hurst parameter are affected by the increase of porosity.« less

Modeling of rapid shutdown in the DIII-D tokamak by core deposition of high-Z material

DOE PAGES

Izzo, Valerie A.; Parks, Paul B.

2017-06-22

MHD modeling of shell-pellet injection for disruption mitigation is carried out under the assumption of idealized delivery of the radiating payload to the core, neglecting the physics of shell ablation. The shell pellet method is designed to produce an inside-out thermal quench in which core thermal heat is radiated while outer flux surfaces remain intact, protecting the divertor from large conducted heat loads. In the simulation, good outer surfaces remain until the thermal quench is nearly complete, and a high radiated energy fraction is achieved. As a result, when the outermost surfaces are destroyed, runaway electron test orbits indicate thatmore » the rate of runaway electron loss is very fast compared with prior massive gas injection simulations, which is attributed to the very different current profile evolution that occurs with central cooling.« less

The Boundary of Tectonic Units of the South China Continent in the Meso-Neoproterozoic - Early Paleozoic: Insights from Integrated Geophysical Study

NASA Astrophysics Data System (ADS)

Guo, L.; Gao, R.; Meng, X.; Zhang, J.; Wang, H.; Liu, Y.

2013-12-01

The South China continent (SCC), located in the transition zone of the Eurasia, India and Pacific plates, formed in the Meso-Neoproterozoic by collision of the Yangtze block and the Cathaysia block. However, the boundaries of the two blocks before the late Paleozoic (from Meso-Neoproterozoic to early Paleozoic) remain debated in the literature due to strong and complex tectonic and magmatic activities since then. The south of Jiangnan archicontinent is covered mostly by the thick strata since the late Paleozoic, the surface of which is widely covered by the vegetation. And the regional tectonic deformation is extremely complicated with few basal outcrops. For decades, a variety of geophysical detections have been performed in the SCC for understanding the deep structure and tectonic evolution, including deep seismic sounding (DSS) profiles, magnetotelluric sounding (MT) profiles, gravity and magnetic surveys and a small amount of deep seismic reflection profiles. However, due to the limitations of resolution and accuracy of the observed geophysical data in the past, especially short of the deep seismic reflection profiles to reveal fine lithosphere structure, different scientists presented various views on the division of tectonic units in the SCC. In quite recent years, the SinoProbe-02 project launched a long profile of geophysical detections across the two blocks in the SCC, including deep seismic reflection, DSS, MT, and broadband seismic observation, the resolution and accuracy of which had been improved greatly. These newly data will benefit better understanding the deep structure and tectonic evolution of the SCC. Here, we assembled high-resolution Bouguer gravity anomalies and aeromagnetic anomalies data in the SCC. The magnetic data were reduced to the pole by used a varying magnetic inclinations algorithm. We then performed anomaly separation and multi-scales lineation structure analysis on the gravity and RTP magnetic data, and then did 3D fusion analysis on them. Seismic reflection profiles focus on fine lithosphere structure vertically along the profile, while gravity and magnetic methods are beneficial to reveal regional tectonic features laterally. The integrate study of seismic, gravity and magnetic data will play the advantages of various methods and constraint and confirm each other. Hence, we did the interpretation of gravity and magnetic data with constraints of the newly seismic reflection profile. Based on the above studies, we traced the boundaries of tectonic units in the SCC from Meso-Neoproterozoic to early Paleozoic, and formed a certain understanding of the tectonic evolution in the SCC before the late Paleozoic. Acknowledgment: We acknowledge the financial support of the SinoProbe-02-01 and SinoProbe-01-05 projects, and the Fundamental Research Funds for the Central Universities.

River Inflows into Lakes: Basin Temperature Profiles Driven By Peeling Detrainment from Dense Underflows

NASA Astrophysics Data System (ADS)

Hogg, C. A. R.; Huppert, H. E.; Imberger, J.; Dalziel, S. B.

2014-12-01

Dense gravity currents from river inflows feed fluid into confined basins in lakes. Large inflows can influence temperature profiles in the basins. Existing parameterisations of the circulation and mixing of such inflows are often based on the entrainment of ambient fluid into the underflowing gravity currents. However, recent observations have suggested that uni-directional entrainment into a gravity current does not fully describe the transfer between such gravity currents and the ambient water. Laboratory experiments visualised peeling detrainment from the gravity current occurring when the ambient fluid was stratified. A theoretical model of the observed peeling detrainment was developed to predict the temperature profile in the basin. This new model gives a better approximation of the temperature profile observed in the experiments than the pre-existing entraining model. The model can now be developed such that it integrates into operational models of lake basins.

Parametric resonant triad interactions in a free shear layer

NASA Technical Reports Server (NTRS)

Mallier, R.; Maslowe, S. A.

1993-01-01

We investigate the weakly nonlinear evolution of a triad of nearly-neutral modes superimposed on a mixing layer with velocity profile u bar equals Um + tanh y. The perturbation consists of a plane wave and a pair of oblique waves each inclined at approximately 60 degrees to the mean flow direction. Because the evolution occurs on a relatively fast time scale, the critical layer dynamics dominate the process and the amplitude evolution of the oblique waves is governed by an integro-differential equation. The long-time solution of this equation predicts very rapid (exponential of an exponential) amplification and we discuss the pertinence of this result to vortex pairing phenomena in mixing layers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalesse, Heike; Szyrmer, Wanda; Kneifel, Stefan

In this paper, Radar Doppler spectra measurements are exploited to study a riming event when precipitating ice from a seeder cloud sediment through a supercooled liquid water (SLW) layer. The focus is on the "golden sample" case study for this type of analysis based on observations collected during the deployment of the Atmospheric Radiation Measurement Program's (ARM) mobile facility AMF2 at Hyytiälä, Finland, during the Biogenic Aerosols – Effects on Clouds and Climate (BAECC) field campaign. The presented analysis of the height evolution of the radar Doppler spectra is a state-of-the-art retrieval with profiling cloud radars in SLW layers beyondmore » the traditional use of spectral moments. Dynamical effects are considered by following the particle population evolution along slanted tracks that are caused by horizontal advection of the cloud under wind shear conditions. In the SLW layer, the identified liquid peak is used as an air motion tracer to correct the Doppler spectra for vertical air motion and the ice peak is used to study the radar profiles of rimed particles. A 1-D steady-state bin microphysical model is constrained using the SLW and air motion profiles and cloud top radar observations. The observed radar moment profiles of the rimed snow can be simulated reasonably well by the model, but not without making several assumptions about the ice particle concentration and the relative role of deposition and aggregation. In conclusion, this suggests that in situ observations of key ice properties are needed to complement the profiling radar observations before process-oriented studies can effectively evaluate ice microphysical parameterizations.« less

Improving Our Understanding of the 3D Coronal Evolution of CME Propagation

NASA Astrophysics Data System (ADS)

Hess Webber, Shea A.; Thompson, Barbara J.; Ireland, Jack; Kwon, Ryun Young

2017-08-01

An improved understanding of the kinematic properties of CMEs and CME-associated phenomena has several impacts: 1) a less ambiguous method of mapping propagating structures into their inner coronal manifestations, 2) a clearer view of the relationship between the “main” CME and CME-associated brightenings, and 3) an improved identification of the heliospheric sources of shocks, Type II bursts, and SEPs. We present the results of a mapping technique that facilitates the separation of CMEs and CME-associated brightenings (such as shocks) from background corona. The Time Convolution Mapping Method (TCMM) segments coronagraph data to identify the time history of coronal evolution, the advantage being that the spatiotemporal evolution profiles allow users to separate features with different propagation characteristics. For example, separating “main” CME mass from CME-associated brightenings or shocks is a well-known obstacle, which the TCMM aids in differentiating. A TCMM CME map is made by first recording the maximum value each individual pixel in the image reaches during the traversal of the CME. Then the maximum value is convolved with an index to indicate the time that the pixel reached that value. The TCMM user is then able to identify continuous “kinematic profiles,” indicating related kinematic behavior, and also identify breaks in the profiles that indicate a discontinuity in kinematic history (i.e. different structures or different propagation characteristics). The maps obtained from multiple spacecraft viewpoints (i.e., STEREO and SOHO) can then be fit with advanced structural models to obtain the 3D properties of the evolving phenomena.

One-dimensional evolution of the upper water column in the Atlantic sector of the Arctic Ocean in winter

NASA Astrophysics Data System (ADS)

Fer, Ilker; Peterson, Algot K.; Randelhoff, Achim; Meyer, Amelie

2017-03-01

A one-dimensional model is employed to reproduce the observed time evolution of hydrographic properties in the upper water column during winter, between 26 January and 11 March 2015, in a region north of Svalbard in the Nansen Basin of the Arctic Ocean. From an observed initial state, vertical diffusion equations for temperature and salinity give the hydrographic conditions at a later stage. Observations of microstructure are used to synthesize profiles of vertical diffusivity, K, representative of varying wind forcing conditions. The ice-ocean heat and salt fluxes at the ice-ocean interface are implemented as external source terms, estimated from the salt and enthalpy budgets, using friction velocity from the Rossby similarity drag relation, and the ice core temperature profiles. We are able to reproduce the temporal evolution of hydrography satisfactorily for two pairs of measured profiles, suggesting that the vertical processes dominated the observed changes. Sensitivity tests reveal a significant dependence on K. Variation in other variables, such as the temperature gradient of the sea ice, the fraction of heat going to ice melt, and the turbulent exchange coefficient for heat, are relatively less important. The increase in salinity as a result of freezing and brine release is approximately 10%, significantly less than that due to entrainment (90%) from beneath the mixed layer. Entrainment was elevated during episodic storm events, leading to melting. The results highlight the contribution of storms to mixing in the upper Arctic Ocean and its impact on ice melt and mixed-layer salt and nutrient budgets.

Development of a Novel Method for Determination of Momentum Transport Parameters

NASA Astrophysics Data System (ADS)

Peters, Michael J.; Guttenfelder, Walter; Scotti, Filippo; Kaye, Stanley M.; Solomon, Wayne M.

2015-11-01

The toroidal momentum pinch velocity Vφ and diffusivity χφ in NSTX were previously determined from the transient response of the toroidal rotation Ω following applied n =3 magnetic perturbations that brake the plasma. Assuming Π = nmR2(-χϕ ∇Ω + Vϕ Ω), where the momentum flux Π is determined using TRANSP, these local analyses used fits to Ω and ∇Ω to obtain χϕ and Vϕ one flux surface at a time. This work attempts to improve the accuracy of the inferred χϕ(r) and Vϕ(r) profiles by utilizing many flux surfaces simultaneously. We employ nonlinear least-squares minimization that compares the entire perturbed rotation profile evolution Ω(r,t) against the profile evolution generated by solving the momentum transport equation. We compare the local and integrated approaches and discuss their limitations. We also apply the integrated approach to determine whether an additional residual stress contribution (independent of Ω or ∇Ω) can be inferred given experimental uncertainties. This work supported by the U.S. Department of Energy SULI program and contract DE-AC02-09/CH11466, as well as the LLNL contract DE-AC52-07NA27344.

The Effect of Varied Initial Conditions on the Evolution of Protoplanetary Disks

NASA Astrophysics Data System (ADS)

Michael, Scott A.; Durisen, R. H.; Boley, A. C.

2006-12-01

We present a series of three-dimensional hydrodynamics simulations of gravitationally unstable protoplanetary disks with globally constant cooling times. The purpose of these simulations is to study the effects of varying the initial surface density profile, equation of state, and cooling time. All non-fragmenting disks exhibit the same phases of evolution described by Mejía et al. (2005) axisymmetric cooling, a burst in a well-defined multi-armed mode, and a transition to an asymptotic behavior in which heating and cooling are roughly balanced over much of the disk. The burst tends to be weaker for initial surface density profiles that fall more steeply with r. Regardless of initial surface density profile, the outer disk redistributes its mass to follow an approximate Σ ∝ r-5/2 power law. Comparison of different equations of state show that, for a given cooling time, a disk with γ = 7/5 is more likely to fragment than one with γ = 5/3. By varying the cooling time with both equations of state, we are able to confirm the tcoolΩ < 8.25 and 5.14 fragmentation criterion for γ = 7/5 and 5/3, respectively, as found by Rice et al. (2005).

Etching in Chlorine Discharges Using an Integrated Feature Evolution-Plasma Model

NASA Technical Reports Server (NTRS)

Hwang, Helen H.; Bose, Deepak; Govindan, T. R.; Meyyappan, M.; Biegel, Bryan (Technical Monitor)

2001-01-01

Etching of semiconductor materials is reliant on plasma properties. Quantities such as ion and neutral fluxes, both in magnitude and in direction, are often determined by reactor geometry (height, radius, position of the coils, etc.) In order to obtain accurate etching profiles, one must also model the plasma as a whole to obtain local fluxes and distributions. We have developed a set of three models that simulates C12 plasmas for etching of silicon, ion and neutral trajectories in the plasma, and feature profile evolution. We have found that the location of the peak in the ion densities in the reactor plays a major role in determining etching uniformity across the wafer. For a stove top coil inductively coupled plasma (ICP), the ion density is peaked at the top of the reactor. This leads to nearly uniform neutral and ion fluxes across the wafer. A side coil configuration causes the ion density to peak near the sidewalls. Ion fluxes are thus greater toward the wall's and decrease toward the center. In addition, the ions bombard the wafer at a slight angle. This angle is sufficient to cause slanted profiles, which is highly undesirable.

State of the art discovery with tumor profiling in pediatric oncology.

PubMed

Carroll, William L; Raetz, Elizabeth; Meyer, Julia

2015-01-01

It is an exciting era in pediatric oncology with the advent of new technologies to comprehensively characterize cancer genomes in childhood tumors. Defining the genetic landscape of pediatric tumors has not only provided critical insight into tumor evolution, but it has also offered promise for more effective treatment in some cases, such as Philadelphia chromosome-positive acute lymphoblastic leukemia (ALL) and anaplastic lymphoma kinase (ALK)-mutated tumors. However, several challenges remain as the field of genomic tumor profiling emerges. This new technology is costly, and the overall impact on survival has yet to be determined. Tumor heterogeneity and clonal evolution have also presented challenges in the development of targeted therapy. In this article, we review breakthroughs in gene sequencing methodology and discuss examples where genomic discoveries have resulted in the recognition of tumor susceptibility as well as incorporation of targeted therapy. We also discuss how broad scale comprehensive tumor analyses have demonstrated the convergence of individual genetic alterations on common relevant pathways. Although the impact of tumor profiling is best studied within the context of rigorously designed clinical trials, there is promise that there will be growing opportunities for the adaption of precision medicine in pediatric oncology in the future.

Mechanisms behind overshoots in mean cluster size profiles in aggregation-breakup processes.

PubMed

Sadegh-Vaziri, Ramiar; Ludwig, Kristin; Sundmacher, Kai; Babler, Matthaus U

2018-05-26

Aggregation and breakup of small particles in stirred suspensions often shows an overshoot in the time evolution of the mean cluster size: Starting from a suspension of primary particles the mean cluster size first increases before going through a maximum beyond which a slow relaxation sets in. Such behavior was observed in various systems, including polymeric latices, inorganic colloids, asphaltenes, proteins, and, as shown by independent experiments in this work, in the flocculation of microalgae. This work aims at investigating possible mechanism to explain this phenomenon using detailed population balance modeling that incorporates refined rate models for aggregation and breakup of small particles in turbulence. Four mechanisms are considered: (1) restructuring, (2) decay of aggregate strength, (3) deposition of large clusters, and (4) primary particle aggregation where only aggregation events between clusters and primary particles are permitted. We show that all four mechanisms can lead to an overshoot in the mean size profile, while in contrast, aggregation and breakup alone lead to a monotonic, "S"-shaped size evolution profile. In order to distinguish between the different mechanisms simple protocols based on variations of the shear rate during the aggregation-breakup process are proposed. Copyright © 2018 Elsevier Inc. All rights reserved.

Character evolution and missing (morphological) data across the core asterids (Gentianidae)

USDA-ARS?s Scientific Manuscript database

Character evolution and missing (morphological) data across Asteridae. Premise of the study: Our current understanding of flowering plant phylogeny provides an excellent framework for exploring various aspects of character evolution through comparative analyses. However, attempts to synthesize this ...

Gravitational wave content and stability of uniformly, rotating, triaxial neutron stars in general relativity.

PubMed

Tsokaros, Antonios; Ruiz, Milton; Paschalidis, Vasileios; Shapiro, Stuart L; Baiotti, Luca; Uryū, Kōji

2017-06-15

Targets for ground-based gravitational wave interferometers include continuous, quasiperiodic sources of gravitational radiation, such as isolated, spinning neutron stars. In this work, we perform evolution simulations of uniformly rotating, triaxially deformed stars, the compressible analogs in general relativity of incompressible, Newtonian Jacobi ellipsoids. We investigate their stability and gravitational wave emission. We employ five models, both normal and supramassive, and track their evolution with different grid setups and resolutions, as well as with two different evolution codes. We find that all models are dynamically stable and produce a strain that is approximately one-tenth the average value of a merging binary system. We track their secular evolution and find that all our stars evolve toward axisymmetry, maintaining their uniform rotation, rotational kinetic energy, and angular momentum profiles while losing their triaxiality.

Velocity Space Evolution of Dayside Reconnection Outflow

NASA Astrophysics Data System (ADS)

Broll, J. M.; Fuselier, S. A.; Trattner, K. J.

2015-12-01

Magnetic reconnection is a universal phenomenon occurring when energy stored in a complicated magnetic field topology is released into the surrounding plasma as the field simplifies its configuration. At Earth's dayside magnetopause, reconnection is responsible for mass and energy input from the solar wind into the magnetosphere. We describe the evolution of the velocity-space evolution of plasma outflow from a dayside magnetic reconnection region. We analyze Cluster magnetopause crossings between 1 and 10 Earth radii from the reconnection X-line predicted by the maximum magnetic shear model. The effects of nonadiabatic processes, such as deformation of the profile due to finite-gyroradius-induced pitch-angle scattering and wave-particle interactions, are described. We compare observations and simulation results to describe the outflow evolution and infer the field-aligned distance between an observation and the reconnection site producing it.

On the profile evolution of three artificial pebble beaches at Marina di Pisa, Italy

NASA Astrophysics Data System (ADS)

Bertoni, Duccio; Sarti, Giovanni

2011-07-01

In this paper, the profiles of three artificial coarse-grained beaches located at Marina di Pisa (Tuscany, Italy) were monitored from April 2008 to May 2009 in order to define the response of the beaches to major storms that occurred during the study. Two beaches are similar, the third differs in length and in the level of protection, being less than half the length of the others and devoid of an offshore submerged breakwater. The work was achieved by means of accurate topographic surveys intended to reconstruct the beach profile from the backshore up to the foreshore-upper shoreface transition (step). The surveys were performed with an RTK-GPS instrument, which provided extremely precise recording of the beach. The most significant features of the beaches were tracked during each survey; in particular, the landward foot of the storm berm, the crest of the storm berm, the coastline, and the step crest were monitored. Five cross-shore transects were traced on each beach. Along these transects, any meaningful slope change was recorded to obtain accurate sections of the beach. The field datasets were processed with AutoCAD software to compare the beach profile evolution during the year-long research. The results showed a comparable evolution of the twin beaches: the resulting storm berm retreat of about 15 to 19 m is a remarkable feature considering the coarse grain size and the offshore protection. Due to the absence of the breakwater, the third beach was characterized by even higher values of recession (over 20 m), and showed hints of wave reflection-related processes after the huge, steep storm berm had been formed and grown after the high energy events. These processes were not as evident on the twin beaches. These results underline the different response of three similar protection schemes, and the importance that frequent monitoring of the beach morphology holds when it comes to coastal management issues.

The GALEX/S4G Surface Brightness and Color Profiles Catalog. I. Surface Photometry and Color Gradients of Galaxies

NASA Astrophysics Data System (ADS)

Bouquin, Alexandre Y. K.; Gil de Paz, Armando; Muñoz-Mateos, Juan Carlos; Boissier, Samuel; Sheth, Kartik; Zaritsky, Dennis; Peletier, Reynier F.; Knapen, Johan H.; Gallego, Jesús

2018-02-01

We present new spatially resolved surface photometry in the far-ultraviolet (FUV) and near-ultraviolet (NUV) from images obtained by the Galaxy Evolution Explorer (GALEX) and IRAC1 (3.6 μm) photometry from the Spitzer Survey of Stellar Structure in Galaxies (S4G). We analyze the radial surface brightness profiles μ FUV, μ NUV, and μ [3.6], as well as the radial profiles of (FUV ‑ NUV), (NUV ‑ [3.6]), and (FUV ‑ [3.6]) colors in 1931 nearby galaxies (z < 0.01). The analysis of the 3.6 μm surface brightness profiles also allows us to separate the bulge and disk components in a quasi-automatic way and to compare their light and color distribution with those predicted by the chemo-spectrophotometric models for the evolution of galaxy disks of Boissier & Prantzos. The exponential disk component is best isolated by setting an inner radial cutoff and an upper surface brightness limit in stellar mass surface density. The best-fitting models to the measured scale length and central surface brightness values yield distributions of spin and circular velocity within a factor of two of those obtained via direct kinematic measurements. We find that at a surface brightness fainter than μ [3.6] = 20.89 mag arcsec‑2, or below 3 × 108 M ⊙ kpc‑2 in stellar mass surface density, the average specific star formation rate (sSFR) for star-forming and quiescent galaxies remains relatively flat with radius. However, a large fraction of GALEX Green Valley galaxies show a radial decrease in sSFR. This behavior suggests that an outside-in damping mechanism, possibly related to environmental effects, could be testimony of an early evolution of galaxies from the blue sequence of star-forming galaxies toward the red sequence of quiescent galaxies.

Radial Distribution of Stars, Gas, and Dust in SINGS Galaxies. III. Modeling the Evolution of the Stellar Component in Galaxy Disks

NASA Astrophysics Data System (ADS)

Muñoz-Mateos, J. C.; Boissier, S.; Gil de Paz, A.; Zamorano, J.; Kennicutt, R. C., Jr.; Moustakas, J.; Prantzos, N.; Gallego, J.

2011-04-01

We analyze the evolution of 42 spiral galaxies in the Spitzer Infrared Nearby Galaxies Survey. We make use of ultraviolet (UV), optical, and near-infrared radial profiles, corrected for internal extinction using the total-infrared to UV ratio, to probe the emission of stellar populations of different ages as a function of galactocentric distance. We fit these radial profiles with models that describe the chemical and spectro-photometric evolution of spiral disks within a self-consistent framework. These backward evolutionary models successfully reproduce the multi-wavelength profiles of our galaxies, except for the UV profiles of some early-type disks for which the models seem to retain too much gas. From the model fitting we infer the maximum circular velocity of the rotation curve V C and the dimensionless spin parameter λ. The values of V C are in good agreement with the velocities measured in H I rotation curves. Even though our sample is not volume limited, the resulting distribution of λ is close to the lognormal function obtained in cosmological N-body simulations, peaking at λ ~ 0.03 regardless of the total halo mass. We do not find any evident trend between λ and Hubble type, besides an increase in the scatter for the latest types. According to the model, galaxies evolve along a roughly constant mass-size relation, increasing their scale lengths as they become more massive. The radial scale length of most disks in our sample seems to have increased at a rate of 0.05-0.06 kpc Gyr-1, although the same cannot be said of a volume-limited sample. In relative terms, the scale length has grown by 20%-25% since z = 1 and, unlike the former figure, we argue that this relative growth rate can be indeed representative of a complete galaxy sample.

Teaching of evolution in public schools: A cross-cultural examination

NASA Astrophysics Data System (ADS)

Stewart, Joshua M.

The current study sought to examine how the cultural settings of Colorado, United States, and Baden-Wurttemberg, Germany, influenced perspectives, understandings, and acceptance of college students who want to become teachers (i.e., prospective teachers) in regard to the theory of evolution, creationism, and intelligent design with both quantitative and qualitative components. The quantitative sample for the study consisted of 221 German prospective teachers from Baden-Wurttemberg and 231 United States prospective teachers from Colorado. The quantitative component consisted of a 42-item survey with both Likert and true/false items to examine how (1) country of origin, (2) religious participation, and (3) educational background influence students' views and understandings of the theory of evolution and alternative conceptions. Additionally, in a Likert 6-item motivated reasoning task (a theoretical construct), prospective teachers were asked to read and critique arguments supporting and opposing the theory of evolution; differences in how students critiqued arguments were hypothesized to demonstrate biases. For a separate sample from the same locations (8 German and 11 United States students), a qualitative component examined prospective teachers' positions on teaching the theory of evolution in public schools. Prospective teachers were asked to provide support for their position, anticipate opposing arguments, and implications that both positions would have for students. Lastly, prospective teachers were also asked to explain and define the theory of evolution. The current study aided in examining how teachers' perspectives, understandings, and acceptance impacted what was taught in the science classroom. The researcher found that country of origin, religious behavior, and educational background predicted prospective teachers' responses to numerous criterion variables used in the current study. Further, qualitative results expressed major differences between prospective teachers' views regarding the inclusion of evolution or alternative conceptions in public schools, between Colorado and Baden-Wurttemberg. As a potential indicator, findings from the current study may be useful in understanding potential differences between these two countries, in regard to perceptions of the theory of evolution and alternative conceptions. Further, findings from the current study might also inform how these topics might be covered in educational settings with a lowered risk of conflict.

Photosynthetic water splitting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greenbaum, E.

1981-01-01

The photosynthetic unit of hydrogen evolution, the turnover time of photosynthetic hydrogen production, and hydrogenic photosynthesis are discussed in the section on previous work. Recent results are given on simultaneous photoproduction of hydrogen and oxygen, kinetic studies, microscopic marine algae-seaweeds, and oxygen profiles.

Validation of Copernicus Height-resolved Ozone data Products from Sentinel-5P TROPOMI using global sonde and lidar networks (CHEOPS-5P)

NASA Astrophysics Data System (ADS)

Keppens, Arno; Lambert, Jean-Christopher; Hubert, Daan; Verhoelst, Tijl; Granville, José; Ancellet, Gérard; Balis, Dimitris; Delcloo, Andy; Duflot, Valentin; Godin-Beekmann, Sophie; Koukouli, Marilisa; Leblanc, Thierry; Stavrakou, Trissevgeni; Steinbrecht, Wolfgang; Stübi, Réné; Thompson, Anne

2017-04-01

Monitoring of and research on air quality, stratospheric ozone and climate change require global and long-term observation of the vertical distribution of atmospheric ozone, at ever-improving resolution and accuracy. Global tropospheric and stratospheric ozone profile measurement capabilities from space have therefore improved substantially over the last decades. Being a part of the space segment of the Copernicus Atmosphere and Climate Services that is currently under implementation, the upcoming Sentinel-5 Precursor (S5P) mission with its imaging spectrometer TROPOMI (Tropospheric Monitoring Instrument) is dedicated to the measurement of nadir atmospheric radiance and solar irradiance in the UV-VIS-NIR-SWIR spectral range. Ozone profile and tropospheric ozone column data will be retrieved from these measurements by use of several complementary retrieval methods. The geophysical validation of the enhanced height-resolved ozone data products, as well as support to the continuous evolution of the associated retrieval algorithms, is a key objective of the CHEOPS-5P project, a contributor to the ESA-led S5P Validation Team (S5PVT). This work describes the principles and implementation of the CHEOPS-5P quality assessment (QA) and validation system. The QA/validation methodology relies on the analysis of S5P retrieval diagnostics and on comparisons of S5P data with reference ozone profile measurements. The latter are collected from ozonesonde, stratospheric lidar and tropospheric lidar stations performing network operation in the context of WMO's Global Atmosphere Watch, including the NDACC global and SHADOZ tropical networks. After adaptation of the Multi-TASTE versatile satellite validation environment currently operational in the context of ESA's CCI, EUMETSAT O3M-SAF, and CEOS and SPARC initiatives, a list of S5P data Quality Indicators (QI) will be derived from complementary investigations: (1) data content and information content studies of the S5P data retrievals; (2) traceable preparation of the S5P data and correlative measurements in view of data comparisons (co-location studies, unit and representation conversions, handling of smoothing and sampling issues, independent estimate of tropopause altitude, (sub-)column integration...), with associated error propagation; (3) data comparisons leading to statistical estimates of the systematic bias and random difference between S5P and reference network data as a function of latitude, their cycles, their long-term evolution, and their dependences on influence quantities (e.g., clouds, solar zenith angle, and slant column density); (4) and finally the assessment of compliance with user requirements as formulated, e.g., by Copernicus Atmosphere and Climate services and by GCOS.

Wave-driven Hydrodynamics for Different Reef Geometries and Roughness Scenarios

NASA Astrophysics Data System (ADS)

Franklin, G. L.; Marino-Tapia, I.; Torres-Freyermuth, A.

2013-05-01

In fringing reef systems where a shallow lagoon is present behind the reef crest, wave breaking appears to dominate circulation, controlling numerous key processes such as the transport and dispersion of larvae, nutrients and sediments. Despite their importance, there is a need for more detailed knowledge on the hydrodynamic processes that take place within the surf zone of these systems and the effects different combinations of geometries and roughness have on them. The present study focuses on the use of two-dimensional (2DV) numerical model simulations and data obtained during a field campaign in Puerto Morelos, Quintana Roo, Mexico to better understand the detailed surf zone processes that occur over a fringing reef. The model used is Cornell Breaking Wave and Structures (COBRAS), which solves Reynolds-Averaged Navier-Stokes (RANS) equations. Reef geometries implemented in the model include a reef flat and two different reef crests. The effect of roughness on wave setup, radiation stress, mean flows, and cross-shore spectral evolution for the model results was studied using different roughness coefficients (Nikuradse) and a bathymetric profile obtained in the field using the bottom track option of an Acoustic Doppler Current Profiler. Field data were also analysed for the configuration and roughness of Puerto Morelos. Model results reveal that for all profiles wave setup increased significantly (~22%) with increasing bed roughness, in agreement with previous findings for sandy beaches.For all wave heights and periods studied, increasing roughness also affected spectral wave evolution across the reef, with a significant reduction in energy, particularly at infragravity frequencies. The presence of a reef crest in the profile resulted in differences in behaviour at infragravity frequencies. For example, preliminary results suggest that there is a shift towards higher frequencies as waves progress into the lagoon when a crest is present, something that does not appear to occur over the reef flat. Time-averaged velocities exhibited a dominant onshore flow due to waves at the surface, as is generally reported for coral reefs. Model results also suggest the presence of offshore velocities, which were slightly greater over the reef flat compared to the reef crest. Maximum offshore velocities appear to be more localised in the case of the reef flat whereas they extended over a larger area in the case of the reef crest. In all cases, increased roughness resulted in reduced velocities. These results are important since they concern processes that affect the circulation within the lagoon, which has implications in terms of the lagoon's residence time and hence heat dispersion and exposure to pollutants.

Evolution of Northeast Atlantic Magmatic Continental Margins from an Ethiopian-Afar Perspective

NASA Astrophysics Data System (ADS)

England, R. W.; Cornwell, D. G.; Ramsden, A. M.

2014-12-01

One of the major problems interpreting the evolution of magmatic continental margins is that the structure which should record the pre-magmatic evolution of the rift and which potentially influences the character of the rifting process is partially or completely obscured by thick basalt lava flows and sills. A limited number of deep reflection seismic profiles acquired with tuned seismic sources have penetrated the basalts and provide an image of the pre-magmatic structure, otherwise the principle data are lower resolution wide-angle/refraction profiles and potential field models which have greater uncertainties associated with them. In order to sidestep the imaging constraints we have examined the Ethiopian - Afar rift system to try to understand the rifting process. The Main Ethiopian rift contains an embryonic magmatic passive margin dominated by faulting at the margins of the rift and en-echelon magmatic zones at the centre. Further north toward Afar the rift becomes in-filled with extensive lava flows fed from fissure systems in the widening rift zone. This rift system provides, along its length, a series of 'snapshots' into the possible tectonic evolution of a magmatic continental margin. Deep seismic profiles crossing the NE Atlantic margins reveal ocean dipping reflector sequences (ODRS) overlying extended crust and lower crustal sill complexes of intruded igneous rock, which extend back beneath the continental margin. The ODRS frequently occur in fault bounded rift structures along the margins. We suggest, by analogy to the observations that can be made in the Ethiopia-Afar rift that these fault bounded basins largely form at the embryonic rift stage and are then partially or completely filled with lavas fed from fissures which are now observed as the ODRS. Also in the seismic profiles we identify volcanic constructs on the ODRS which we interpret as the equivalent of the present day fissure eruptions seen in Afar. The ocean ward dip on the ODRS is predominantly the result of post-eruption differential subsidence, as opposed to syn-eruption extension. The timing of intrusion of the lower crustal sill complexes remains unclear but they are most likely to have been emplaced as the supply of magma increased, which implies they are a late stage addition.

The Importance of Long Wavelength Processes in Generating Landscapes

NASA Astrophysics Data System (ADS)

Roberts, Gareth G.; White, Nicky

2017-04-01

The processes responsible for generating landscapes observed on Earth and elsewhere are poorly understood. For example, the relative importance of long (>10 km) and short wavelength erosional processes in determining the evolution of topography is debated. Much work has focused on developing an observational and theoretical framework for evolution of longitudinal river profiles (i.e. elevation as a function of streamwise distance), which probably sets the pace of erosion in low-mid latitude continents. A large number of geomorphic studies emphasis the importance of short wavelength processes in sculpting topography (e.g. waterfall migration, interaction of biota and the solid Earth, hill slope evolution). However, it is not clear if these processes scale to generate topography observed at longer (>10 km) wavelengths. At wavelengths of tens to thousands of kilometers topography is generated by modification of the lithosphere (e.g. shortening, extension, flexure) and by sub-plate processes (e.g. dynamic support). Inversion of drainage patterns suggests that uplift rate histories can be reliably recovered at these long wavelengths using simple erosional models (e.g. stream power). Calculated uplift and erosion rate histories are insensitive to short wavelength (<10 km) or rapid (<100 ka) environmental changes (e.g. biota, precipitation, lithology). One way to examine the relative importance of short and long wavelength processes in generating topography is to transform river profiles into distance-frequency space. We calculate the wavelet power spectrum of a suite of river profiles and examine their spectral content. Big rivers in North America (e.g. Colorado, Rio Grande) and Africa (e.g. Niger, Orange) have a red noise spectrum (i.e. power inversely proportional to wavenumber-squared) at wavelengths > 100 km. More than 90% of river profile elevations in our inventory are determined at these wavelengths. At shorter wavelengths spectra more closely resemble pink noise (power inversely proportional to wavenumber). These observations suggest that short wavelength processes do not simply scale to generate the long wavelength changes in elevation. Instead we suggest that long wavelength processes (e.g. regional uplift, knickzone migration) determine the shape and evolution of nearly all topography. These results suggest that the erosional complexity observed in local geomorphic studies and the relative simplicity of erosional models required to fit continental-scale drainage patterns are not mutually exclusive. Rather that the problem of fluvial erosion is being tackled at different and probably unrelated scales.

Uncertainty propagation in q and current profiles derived from motional Stark effect polarimetry on TFTR (abstract)a)

NASA Astrophysics Data System (ADS)

Batha, S. H.; Levinton, F. M.; Bell, M. G.; Wieland, R. M.; Hirschman, S. P.

1995-01-01

The magnetic-field pitch-angle profile, γp(R)≡arctan(Bpol/Btor), is measured on the TFTR tokamak using a motional Stark effect (MSE) polarimeter. Measured profiles are converted to q profiles with the equilibrium code vmec. Uncertainties in the q profile due to uncertainties in the γp(R), magnetics, and kinetic measurements are quantified. Subsequent uncertainties in the vmec-calculated profiles of current density and shear, both of which are important for stability and transport analyses, are also quantified. Examples of circular plasmas under various confinement modes, including the supershot and L mode, will be given.

Le Fort-based maxillofacial transplantation: current state of the art and a refined technique using orthognathic applications.

PubMed

Gordon, Chad R; Susarla, Srinivas M; Peacock, Zachary S; Kaban, Leonard B; Yaremchuk, Michael J

2012-01-01

Following encouraging results from the first 6 maxillofacial allotransplants, there has been a dramatic rise in interest worldwide. Numerous groups are now devoting resources to increase the frequency of these complex procedures, and with this, the craniomaxillofacial surgeon should become familiar with the emerging state of the art. This article reviews the evolution of Le Fort-based cadaveric studies pertaining to maxillofacial allotransplantation, briefly describes the clinical reports through 2010, and introduces a refined technique applying orthognathic applications. Preliminary studies over the last 5 years have highlighted the challenges associated with transplanting skeletal components, and clinical results presented thus far have been extremely promising. However, a notable area for improvement is suboptimal facial-skeletal harmony and profile in the context of sagittal skeletal projection and maxillomandibular relation. To our knowledge, orthognathic planning as applied to osteocutaneous face transplantation has not been described. Many recipients seen thus far demonstrate some degree of malocclusion and suboptimal harmony, as expected, given the donor-to-recipient skeletal/jaw discrepancies. Given that the goal is to improve function as well as form, the importance of orthognathic planning cannot be overstated with respect to optimizing harmony, profile, and occlusion. Preoperative planning, including generation of donor/recipient dental cast models, as described herein for the first time, is essential.

Observations of Seasonal Morphological Evolution at a Moderately Energetic Beach in Rincón, Puerto Rico

NASA Astrophysics Data System (ADS)

Rivera Nieves, A.; Loubriel, M.; Rodriguez-Abudo, S.; Canals, M.; Salgado-Domínguez, G.

2016-02-01

Seasonal variations in the wave climate near Rincón, Puerto Rico include high winter swells associated with meteorological disturbances in the north and mid Atlantic, short period waves resulting from local storms, and the occasional south swell. The resulting beach morphology is therefore a complex function of the wave climate, wave-induced currents, and local and remote meteorology, among others. Over the past 75 years, this particular stretch of beach has suffered severe erosion problems, losing as much as 100 meters of beach width at particular locations. The purpose of this study is to develop a high-resolution time series of beach morphology to examine in more detail the seasonal variations at the site. Beach profiles will be collected on a weekly basis using an RTK GPS system at three permanent stations spanning 2 km of coast. Sediment samples will be collected along the profiles to identify sediment properties associated with distinct morphological features, while digital photographs will provide a qualitative sense of beach width. The resulting morphological changes will be assessed in light of the Rincon's directional Waverider buoy data and CariCOOS' SWAN high-resolution wave model. This study will provide quantifiable insights into seasonal erosion/accretion trends at a highly touristic stretch of coast in the US Caribbean.

Evolution of low-profile and lightweight electrical connectors for soldier-worn applications

NASA Astrophysics Data System (ADS)

Gans, Eric; Lee, Kang; Jannson, Tomasz; Walter, Kevin

2011-06-01

In addition to military radios, modern warfighters carry cell phones, GPS devices, computers, and night-vision aids, all of which require electrical cables and connectors for data and power transmission. Currently each electrical device operates via independent cables using conventional cable and connector technology. Conventional cables are stiff and difficult to integrate into a soldier-worn garment. Conventional connectors are tall and heavy, as they were designed to ensure secure connections to bulkhead-type panels, and being tall, represent significant snag-hazards in soldier-worn applications. Physical Optics Corporation has designed a new, lightweight and low-profile electrical connector that is more suitable for body-worn applications and operates much like a standard garment snap. When these connectors are mated, the combined height is <0.3 in. - a significant reduction from the 2.5 in. average height of conventional connectors. Electrical connections can be made with one hand (gloved or bare) and blindly (without looking). Furthermore, POC's connectors are integrated into systems that distribute data or power from a central location on the soldier's vest, reducing the length and weight of the cables necessary to interconnect various mission-critical electronic systems. The result is a lightweight power/data distribution system offering significant advantages over conventional electrical connectors in soldier-worn applications.

Electron trapping in evolving coronal structures during a large gradual hard X-ray/radio burst

NASA Technical Reports Server (NTRS)

Bruggmann, G.; Vilmer, N.; Klein, K.-L.; Kane, S. R.

1994-01-01

Gradual hard X-ray/radio bursts are characterized by their long duration, smooth time profile, time delays between peaks at different hard X-ray energies and microwaves, and radiation from extended sources in the low and middle corona. Their characteristic properties have been ascribed to the dynamic evolution of the accelerated electrons in coronal magnetic traps or to the separate acceleration of high-energy electrons in a 'second step' process. The information available so far was drawn from quality considerations of time profiles or even only from the common occurrence of emissions in different spectral ranges. This paper presents model computations of the temporal evolution of hard X-ray and microwave spectra, together with a qualitative discussion of radio lightcurves over a wide spectral range, and metric imaging observations. The basis hypothesis investigated is that the peculiar 'gradual' features can be related to the dynamical evolution of electrons injected over an extended time interval in a coronal trap, with electrons up to relativistic energies being injected simultaneously. The analyzed event (26 April. 1981) is particularly challenging to this hypothesis because of the long time delays between peaks at different X-ray energies and microwave frequencies. The observations are shown to be consistent with the hypothesis, provided that the electrons lose their energy by Coulomb collisions and possibly betatron deceleration. The access of the electrons to different coronal structures varies in the course of the event. The evolution and likely destabilization of part of the coronal plasma-magnetic field configuration is of crucial influence in determining the access to these structures and possibly the dynamical evolution of the trapped electrons through betatron deceleration in the late phase of the event.

The nervous and visual systems of onychophorans and tardigrades: learning about arthropod evolution from their closest relatives.

PubMed

Martin, Christine; Gross, Vladimir; Hering, Lars; Tepper, Benjamin; Jahn, Henry; de Sena Oliveira, Ivo; Stevenson, Paul Anthony; Mayer, Georg

2017-08-01

Understanding the origin and evolution of arthropods requires examining their closest outgroups, the tardigrades (water bears) and onychophorans (velvet worms). Despite the rise of molecular techniques, the phylogenetic positions of tardigrades and onychophorans in the panarthropod tree (onychophorans + tardigrades + arthropods) remain unresolved. Hence, these methods alone are currently insufficient for clarifying the panarthropod topology. Therefore, the evolution of different morphological traits, such as one of the most intriguing features of panarthropods-their nervous system-becomes essential for shedding light on the origin and evolution of arthropods and their relatives within the Panarthropoda. In this review, we summarise current knowledge of the evolution of panarthropod nervous and visual systems. In particular, we focus on the evolution of segmental ganglia, the segmental identity of brain regions, and the visual system from morphological and developmental perspectives. In so doing, we address some of the many controversies surrounding these topics, such as the homology of the onychophoran eyes to those of arthropods as well as the segmentation of the tardigrade brain. Finally, we attempt to reconstruct the most likely state of these systems in the last common ancestors of arthropods and panarthropods based on what is currently known about tardigrades and onychophorans.

The distribution of organic carbon fractions in a typical loess-paleosol profile and its paleoenvironmental significance

PubMed Central

Hu, Feinan; Huo, Na; Shang, Yingni; Chang, Wenqian

2018-01-01

Background The loess-paleosol sequence on the Loess Plateau has been considered an important paleoclimatic archive to study global climatic and environmental changes in the Quaternary. So far, little attention has been paid to the characteristics of soil organic carbon fractions in loess-paleosol sequences, which may provide valuable information for exploring the evolution of climate and environment in the Quaternary on the Loess Plateau. Methods In order to explore the significance of mineral-associated organic carbon to total organic carbon (MOC/TOC) ratios in the loess-paleosol sequence for reconstructing paleoenvironmental and paleoclimatic evolution in the Quaternary on the Loess Plateau, we selected a typical loess-paleosol profile in Chunhua county, Xianyang city, Shaanxi province, as the research object. The content of total organic carbon (TOC) and MOC/TOC ratio in each loess and paleosol layers of the Chunhua loess-paleosol profile were analyzed, together with the paleoclimatic proxies, such as soil grain size, CaCO3 content and their correlations with organic carbon parameters. Results The main results were as follows: (1) the total content of soil organic carbon and MOC/TOC ratios were generally higher in paleosol layers than in the underlying loess layers of the Chunhua loess-paleosol profile. Compared to total organic carbon content, MOC/TOC ratios changed more obviously in soil layers below a paleosol layer S8; (2) soil clay content and median grain size (Md (ϕ)) were higher in paleosol than in the underlying loess, while CaCO3 content showed an opposite tendency. In the Chunhua profile, the distribution characteristics of the three paleoclimatic proxies showed good indications of paleoclimate changes in the Quaternary; (3) in the Chunhua loess-paleosol profile, MOC/TOC ratios were positively correlated with clay content and median grain size (ϕ), while negatively correlated with CaCO3 content, and the correlations were more significant in soil layers below S8. Discussion Our results indicated that MOC/TOC ratios in the Chunhua loess-paleosol profile correlated with the cold dry-warm wet paleoclimatic cycle in the Quaternary. The high MOC/TOC ratios in the loess-paleosol profile might reflect warm and humid climate, while lower ratios indicated relatively cold and dry climate. That is because when the climate changed from warm-humid to cold-dry, the vegetation coverage and pedogenesis intensity decreased, which increased soil CaCO3 content and decreased soil clay content and Md (ϕ), leading to decreased MOC/TOC ratios. Compared to TOC, MOC/TOC ratios had greater significance in indicating paleoenvironmental evolution in the Quaternary on the Loess Plateau. Therefore, investigating MOC/TOC ratios in loess-paleosol profile can offer new evidence to reconstructing paleoenvironmental changes, and also provide a basis for predicting responses of soil organic carbon pools to vegetation and climate changes in the future. PMID:29666763

The role of stress in self-ordered porous anodic oxide formation and corrosion of aluminum

NASA Astrophysics Data System (ADS)

Capraz, Omer Ozgur

The phenomenon of plastic flow induced by electrochemical reactions near room temperature is significant in porous anodic oxide (PAO) films, charging of lithium batteries and stress-corrosion cracking (SCC). As this phenomenon is poorly understood, fundamental insight into flow from our work may provide useful information for these problems. In-situ monitoring of the stress state allows direct correlation between stress and the current or potential, thus providing fundamental insight into technologically important deformation and failure mechanisms induced by electrochemical reactions. A phase-shifting curvature interferometry was designed to investigate the stress generation mechanisms on different systems. Resolution of our curvature interferometry was found to be ten times more powerful than that obtained by state-of-art multiple deflectometry technique and the curvature interferometry helps to resolve the conflicting reports in the literature. During this work, formation of surface patterns during both aqueous corrosion of aluminum and formation of PAO films were investigated. Interestingly, for both cases, stress induced plastic flow controls the formation of surface patterns. Pore formation mechanisms during anodizing of the porous aluminum oxide films was investigated . PAO films are formed by the electrochemical oxidation of metals such as aluminum and titanium in a solution where oxide is moderately soluble. They have been used extensively to design numerous devices for optical, catalytic, and biological and energy related applications, due to their vertically aligned-geometry, high-specific surface area and tunable geometry by adjusting process variables. These structures have developed empirically, in the absence of understanding the process mechanism. Previous experimental studies of anodizing-induced stress have extensively focused on the measurement of average stress, however the measurement of stress evolution during anodizing does not provide sufficient information to understand the potential stress mechanisms. We developed a new method, which enables us to discriminate the potential stress mechanisms during anodizing and characterize the evolution of the stress profile during film growth. Using stress measurement and characterization techniques, we demonstrated the evolution of the stress profile during the film formation and discussed the role of stress on the PAO film formation. Compressive stress builds up linearly during the anodizing, while barrier oxide film gets thicker until the onset of the pore initiation. Both barrier layer thickness and the integrated oxide stress decreased rapidly to the steady-state period when pore initiation began. The morphology change and stress transients points out the transition from elastic to plastic oxide behavior, similar to those observed in other situations such as lithium intercalation into silicon. The stress profile is consistent with the stress gradient needed to drive plastic flow observed experimentally. We also addressed the dependence of overall stress generation on applied current density. Apparently, stress caused by expansion or contraction of oxide and metal interface depends on the volume change due to overall reactions. In the last chapter, the stress generation during alkaline Al corrosion will be discussed. The enhancement of mechanical degradation by corrosion is the basis for the damage process such as stress-corrosion cracking. Understanding the synergistic effect of stress on stress-corrosion cracking mechanism is necessary to design new materials to improve the safety and viability of existing energy conversion systems. the high-resolution in-situ stress measurements during Al corrosion in alkaline solution was presented, supported by characterization techniques and Fast Fourier Transform analysis. Unprecedented curvature resolution of curvature interferometry permits the monitoring of stress during extended periods of corrosion of thick metal samples. Evolution of concaved-shaped surface patterns is in a great harmony with recorded tensile stress. Furthermore, absolute value of tensile stress onset of the plasticity depends on the dissolution rate of metal and yield stress of metal. The measurements reveal corrosion-induced tensile stress generation, leading to surface plasticity. This finding is evidence that corrosion can directly bring about plasticity, and may be relevant to mechanism of corrosion-induced degradation.

Clonal evolution and resistance to EGFR blockade in the blood of colorectal cancer patients.

PubMed

Siravegna, Giulia; Mussolin, Benedetta; Buscarino, Michela; Corti, Giorgio; Cassingena, Andrea; Crisafulli, Giovanni; Ponzetti, Agostino; Cremolini, Chiara; Amatu, Alessio; Lauricella, Calogero; Lamba, Simona; Hobor, Sebastijan; Avallone, Antonio; Valtorta, Emanuele; Rospo, Giuseppe; Medico, Enzo; Motta, Valentina; Antoniotti, Carlotta; Tatangelo, Fabiana; Bellosillo, Beatriz; Veronese, Silvio; Budillon, Alfredo; Montagut, Clara; Racca, Patrizia; Marsoni, Silvia; Falcone, Alfredo; Corcoran, Ryan B; Di Nicolantonio, Federica; Loupakis, Fotios; Siena, Salvatore; Sartore-Bianchi, Andrea; Bardelli, Alberto

2015-07-01

Colorectal cancers (CRCs) evolve by a reiterative process of genetic diversification and clonal evolution. The molecular profile of CRC is routinely assessed in surgical or bioptic samples. Genotyping of CRC tissue has inherent limitations; a tissue sample represents a single snapshot in time, and it is subjected to spatial selection bias owing to tumor heterogeneity. Repeated tissue samples are difficult to obtain and cannot be used for dynamic monitoring of disease progression and response to therapy. We exploited circulating tumor DNA (ctDNA) to genotype colorectal tumors and track clonal evolution during treatment with the epidermal growth factor receptor (EGFR)-specific antibodies cetuximab or panitumumab. We identified alterations in ctDNA of patients with primary or acquired resistance to EGFR blockade in the following genes: KRAS, NRAS, MET, ERBB2, FLT3, EGFR and MAP2K1. Mutated KRAS clones, which emerge in blood during EGFR blockade, decline upon withdrawal of EGFR-specific antibodies, indicating that clonal evolution continues beyond clinical progression. Pharmacogenomic analysis of CRC cells that had acquired resistance to cetuximab reveals that upon antibody withdrawal KRAS clones decay, whereas the population regains drug sensitivity. ctDNA profiles of individuals who benefit from multiple challenges with anti-EGFR antibodies exhibit pulsatile levels of mutant KRAS. These results indicate that the CRC genome adapts dynamically to intermittent drug schedules and provide a molecular explanation for the efficacy of rechallenge therapies based on EGFR blockade.

Reconstruction of high temporal resolution Thomson scattering data during a modulated electron cyclotron resonance heating using conditional averaging

NASA Astrophysics Data System (ADS)

Kobayashi, T.; Ida, K.; Itoh, K.; Yoshinuma, M.; Moon, C.; Inagaki, S.; Yamada, I.; Funaba, H.; Yasuhara, R.; Tsuchiya, H.; Ohdachi, S.; Yoshimura, Y.; Igami, H.; Shimozuma, T.; Kubo, S.; Tsujimura, T. I.

2016-04-01

This paper provides a software application of the sampling scope concept for fusion research. The time evolution of Thomson scattering data is reconstructed with a high temporal resolution during a modulated electron cyclotron resonance heating (MECH) phase. The amplitude profile and the delay time profile of the heat pulse propagation are obtained from the reconstructed signal for discharges having on-axis and off-axis MECH depositions. The results are found to be consistent with the MECH deposition.

Lithospheric strength of Ganymede: Clues to early thermal profiles from extensional tectonic features

NASA Technical Reports Server (NTRS)

Golombek, M. P.; Banerdt, W. B.

1985-01-01

While it is generally agreed that the strength of a planet's lithosphere is controlled by a combination of brittle sliding and ductile flow laws, predicting the geometry and initial characteristics of faults due to failure from stresses imposed on the lithospheric strength envelope has not been thoroughly explored. Researchers used lithospheric strength envelopes to analyze the extensional features found on Ganymede. This application provides a quantitative means of estimating early thermal profiles on Ganymede, thereby constraining its early thermal evolution.

Reconstruction of high temporal resolution Thomson scattering data during a modulated electron cyclotron resonance heating using conditional averaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kobayashi, T., E-mail: kobayashi.tatsuya@LHD.nifs.ac.jp; Yoshinuma, M.; Ohdachi, S.

2016-04-15

This paper provides a software application of the sampling scope concept for fusion research. The time evolution of Thomson scattering data is reconstructed with a high temporal resolution during a modulated electron cyclotron resonance heating (MECH) phase. The amplitude profile and the delay time profile of the heat pulse propagation are obtained from the reconstructed signal for discharges having on-axis and off-axis MECH depositions. The results are found to be consistent with the MECH deposition.

Reconstruction of high temporal resolution Thomson scattering data during a modulated electron cyclotron resonance heating using conditional averaging.

PubMed

Kobayashi, T; Ida, K; Itoh, K; Yoshinuma, M; Moon, C; Inagaki, S; Yamada, I; Funaba, H; Yasuhara, R; Tsuchiya, H; Ohdachi, S; Yoshimura, Y; Igami, H; Shimozuma, T; Kubo, S; Tsujimura, T I

2016-04-01

This paper provides a software application of the sampling scope concept for fusion research. The time evolution of Thomson scattering data is reconstructed with a high temporal resolution during a modulated electron cyclotron resonance heating (MECH) phase. The amplitude profile and the delay time profile of the heat pulse propagation are obtained from the reconstructed signal for discharges having on-axis and off-axis MECH depositions. The results are found to be consistent with the MECH deposition.

Control of plasma profiles and stability through localised Electron Cyclotron Current Drive

NASA Astrophysics Data System (ADS)

Merkulov, Oleksiy

2006-06-01

The work presented in this thesis addresses several topics from the physics of the magnetically confined plasma inside a tokamak. At the moment, the tokamak is the most successful concept for becoming a future thermonuclear reactor. However, there are plenty of physics and engineering problems to surpass before the prototype can become an economically and environmentally feasible device. The plasma in the tokamak experiences periodic oscillations of the central temperature and density when the safety factor, q, drops below unity on-axis. These oscillations are called the sawtooth instability and are the subject of the first part of this thesis. The sawtooth oscillations are characterised by the relatively slow rise phase, when the central temperature increases, and a following crash phase, when the central temperature drops. The energy, particles and plasma current are redistributed during the sawtooth crash. Obviously, this leads to a confinement degradation and moreover, the sawtooth instability can trigger potentially other more dangerous instabilities, such as a neoclassical tearing mode. The sawtooth period control is realised on the basis of the sawtooth trigger model, derived by Porcelli. The main idea of this model is that the sawtooth crash is triggered when the magnetic shear at the q=1 surface, s1, reaches a critical value which depends on the local plasma parameters. The magnetic shear, s, is a measure for the rate of change in the direction of the field line as a function of the position in the plasma. The sawtooth period can be changed by affecting the evolution of s1. The effects of the electron cyclotron current drive (ECCD) on the shear evolution are studied with a simple model for the poloidal field evolution. The results of the model are summarised in a form of a criterion for the amount of the non-inductive current drive required for sawtooth period control. The effects of the ECCD have been studied in the TEXTOR tokamak in order to confirm the outcome of the model. The observations are complicated by the unavoidable presence of concurrent heating, which also affects the sawtooth period. The effects of additional heating have been separated from the effects of current drive by normalising the sawtooth period, as a function of the power deposition radius, to a case with heating only. The results are in qualitative agreement with the predictions of the theory and confirm that the shear around the q=1 surface determines the moment of the sawtooth crash. The next topic addresses the current diffusion in the presence of the ECCD. It is known that the synergy between non-inductively driven current and the ohmic current can affect the current penetration. However, the standard method of calculations, which assumes neoclassical plasma resistivity, cannot describe the synergistic effects. We propose a model which combines a Fokker-Planck code and magnetic diffusion calculation in a self-consistent manner; where the plasma resistivity is approximated from the Fokker-Planck code at every time step. In this way the parallel electric field is no longer a constant input profile for the Fokker-Planck code, but is a result of calculations of the magnetic diffusion. This model allowed us to identify situations where the synergy between the driven and the ohmic currents becomes significant and affects the current penetration. Both the ECCD power and the electron density have been varied over a wide range of parameters, thus changing the well known non-linearity criterion for ECCD after Harvey. This criterion indicates the non-linear behaviour of the current drive efficiency and also appears to be a good predictor for the synergistic effects. The results are compared with the standard method of calculations which were supplied by the ASTRA transport code. The standard method and the Fokker-Planck code with the self-consistent electric field show similar results in the absence of the synergy and therefore for low values of the Harvey parameter. For co-ECCD and high values of the Harvey parameter substantial synergy between ECCD and the ohmic current is observed and leads to the generation of a large population of suprathermal electrons and slows down the current penetration. The synergy between counter-ECCD and the inductive current results in a decrease of the total driven current and a much smaller population of suprathermal electrons. Another plasma stability problem has been studied during the current ramp-up phase. Quiet and MHD free current ramp-up is a necessary requirement for a long and efficient flat-top phase. The current penetration in the plasma scenarios with various plasma ramp-up rates has been modelled with the ASTRA transport code. It is shown that in the absence of MHD activity the predictions of the ASTRA code are in a agreement with the experimental results.

The evolution of discharge current and channel radius in cloud-to-ground lightning return stroke process

NASA Astrophysics Data System (ADS)

Fan, Tingting; Yuan, Ping; Wang, Xuejuan; Cen, Jianyong; Chang, Xuan; Zhao, Yanyan

2017-09-01

The spectra of two negative cloud-to-ground lightning discharge processes with multi-return strokes are obtained by a slit-less high-speed spectrograph, which the temporal resolution is 110 μs. Combined with the synchronous electrical observation data and theoretical calculation, the physical characteristics during return strokes process are analysed. A positive correlation between discharge current and intensity of ionic lines in the spectra is verified, and based on this feature, the current evolution characteristics during four return strokes are investigated. The results show that the time from peak current to the half-peak value estimated by multi point-fitting is about 101 μs-139 μs. The Joule heat in per unit length of four return strokes channel is in the order of 105J/m-106 J/m. The radius of arc discharge channel is positively related to the discharge current, and the more intense the current is, the greater the radius of channel is. Furthermore, the evolution for radius of arc core channel in the process of return stroke is consistent with the change trend of discharge current after the peak value. Compared with the decay of the current, the temperature decreases more slowly.

Continuous measurement of an atomic current

NASA Astrophysics Data System (ADS)

Laflamme, C.; Yang, D.; Zoller, P.

2017-04-01

We are interested in dynamics of quantum many-body systems under continuous observation, and its physical realizations involving cold atoms in lattices. In the present work we focus on continuous measurement of atomic currents in lattice models, including the Hubbard model. We describe a Cavity QED setup, where measurement of a homodyne current provides a faithful representation of the atomic current as a function of time. We employ the quantum optical description in terms of a diffusive stochastic Schrödinger equation to follow the time evolution of the atomic system conditional to observing a given homodyne current trajectory, thus accounting for the competition between the Hamiltonian evolution and measurement back action. As an illustration, we discuss minimal models of atomic dynamics and continuous current measurement on rings with synthetic gauge fields, involving both real space and synthetic dimension lattices (represented by internal atomic states). Finally, by "not reading" the current measurements the time evolution of the atomic system is governed by a master equation, where—depending on the microscopic details of our CQED setups—we effectively engineer a current coupling of our system to a quantum reservoir. This provides interesting scenarios of dissipative dynamics generating "dark" pure quantum many-body states.

Completing the evolution of supernova remnants and their bubbles

NASA Technical Reports Server (NTRS)

Slavin, Jonathan D.; Cox, Donald P.

1992-01-01

The filling fraction of hot gas in the ISM is reexamined with new calculations of the very long term evolution of SNRs and their fossil hot bubbles. Results are presented of a 1D numerical solution of the evolution of an SNR in a homogeneous medium with a nonthermal pressure corresponding to a 5-micro-G magnetic field and density of 0.2/cu cm. Comparison is made with a control simulation having no magnetic field pressure. It is found that the evolutions, once they have become radiative, differ in several significant ways, while both differ appreciably from qualitative pictures presented in the past. Over most of the evolution of either case, the hot bubble in the interior occupies only a small fraction of the shocked volume, the remainder in a thick shell of slightly compressed material. Column densities and radial distributions of O VI, N V, C IV, and Si IV as well as examples of absorption profiles for their strong UV lines are presented.

Bordetella pertussis evolution in the (functional) genomics era

PubMed Central

Belcher, Thomas; Preston, Andrew

2015-01-01

The incidence of whooping cough caused by Bordetella pertussis in many developed countries has risen dramatically in recent years. This has been linked to the use of an acellular pertussis vaccine. In addition, it is thought that B. pertussis is adapting under acellular vaccine mediated immune selection pressure, towards vaccine escape. Genomics-based approaches have revolutionized the ability to resolve the fine structure of the global B. pertussis population and its evolution during the era of vaccination. Here, we discuss the current picture of B. pertussis evolution and diversity in the light of the current resurgence, highlight import questions raised by recent studies in this area and discuss the role that functional genomics can play in addressing current knowledge gaps. PMID:26297914

Onset and Dynamics of a Subaqueous Dune Field in a Tideless Erosional Deltaic Shoreface: an Analog for the Initial Development of Sand Ridges

NASA Astrophysics Data System (ADS)

Guerrero, Q.; Guillén, J.; Durán, R.; Urgeles, R.

2016-12-01

A subaqueous dune field located over a retreating deltaic lobe in the Ebro delta (NW Mediterranean) is morphodynamically characterized by analyzing three sets of co-located, multibeam bathymetric data acquired in 2004, 2013 and 2015, measurements of near-bottom currents and suspended sediment concentrations, high-resolution seismic profiles and aerial photographs. The dunes, made of fine sand, extend from 5 to 15 m water depth, have straight crestlines and maximum heights and wavelengths of 2.5 and 350 m, respectively (Fig. 1). Results suggest that the onset of dune field development is closely related to the contemporary evolution of the Ebro delta. A change in the main river channel in the 1940s led to the progressive abandonment of the former river mouth, severe coastal retreatment ( 37 m·y-1) and increased sediment availability. The characteristic NW winds of the region induce near-bottom currents flowing towards the SE which are able to rework and transport these sediments. The dune field developed over the shoreface of the abandoned river mouth and is currently active with mean SE migration rates of 10 m·y-1, most likely when high-energetic currents occur. The morphology of the dune field and crestline obliquity to shoreline orientation agree well with that observed in sand ridges of continental shelves worldwide. Mid-outer shelf sand ridges have been interpreted as sedimentary bodies formed in coastal waters and detached from the coast during sea level rise. The studied dune field could therefore be an example of the initial stages of sand ridges development when large amounts of sand are suddenly available. The field developed when the river mouth switched, favored by a pre-existing seafloor irregularity. Despite the time-scale for the genesis and evolution of shoreface sand ridges has been set in time-scales of hundreds/thousands of years, this study shows that shoreface sand ridges can develop during shorter time-scales (tens of years). Furthermore, it is discussed that, in absence of a rapid sea level rise, these sand ridges probably will vanish as a consequence of sediment scarcity and wave reworking.

Dynamical coupling between magnetic equilibrium and transport in tokamak scenario modelling, with application to current ramps

NASA Astrophysics Data System (ADS)

Fable, E.; Angioni, C.; Ivanov, A. A.; Lackner, K.; Maj, O.; Medvedev, S. Yu; Pautasso, G.; Pereverzev, G. V.; Treutterer, W.; the ASDEX Upgrade Team

2013-07-01

The modelling of tokamak scenarios requires the simultaneous solution of both the time evolution of the plasma kinetic profiles and of the magnetic equilibrium. Their dynamical coupling involves additional complications, which are not present when the two physical problems are solved separately. Difficulties arise in maintaining consistency in the time evolution among quantities which appear in both the transport and the Grad-Shafranov equations, specifically the poloidal and toroidal magnetic fluxes as a function of each other and of the geometry. The required consistency can be obtained by means of iteration cycles, which are performed outside the equilibrium code and which can have different convergence properties depending on the chosen numerical scheme. When these external iterations are performed, the stability of the coupled system becomes a concern. In contrast, if these iterations are not performed, the coupled system is numerically stable, but can become physically inconsistent. By employing a novel scheme (Fable E et al 2012 Nucl. Fusion submitted), which ensures stability and physical consistency among the same quantities that appear in both the transport and magnetic equilibrium equations, a newly developed version of the ASTRA transport code (Pereverzev G V et al 1991 IPP Report 5/42), which is coupled to the SPIDER equilibrium code (Ivanov A A et al 2005 32nd EPS Conf. on Plasma Physics (Tarragona, 27 June-1 July) vol 29C (ECA) P-5.063), in both prescribed- and free-boundary modes is presented here for the first time. The ASTRA-SPIDER coupled system is then applied to the specific study of the modelling of controlled current ramp-up in ASDEX Upgrade discharges.

Global population structure and adaptive evolution of aflatoxin-producing fungi

USDA-ARS?s Scientific Manuscript database

We employed interspecific principal component analyses for six different categories (geography, species, precipitation, temperature, aflatoxin chemotype profile, and mating type) and inferred maximum likelihood phylogenies for six combined loci, including two aflatoxin cluster regions (aflM/alfN and...

Construction of new profiler certification tracks.

DOT National Transportation Integrated Search

2014-04-01

The existing smoothness specifications of the Texas Department of Transportation (TxDOT) require : certification of inertial profilers for ride quality assurance testing. Currently, inertial profilers are certified : based on profile measurements col...

Dynamics of Intense Currents in the Solar Wind

NASA Astrophysics Data System (ADS)

Artemyev, Anton V.; Angelopoulos, Vassilis; Halekas, Jasper S.; Vinogradov, Alexander A.; Vasko, Ivan Y.; Zelenyi, Lev M.

2018-06-01

Transient currents in the solar wind are carried by various magnetic field discontinuities that contribute significantly to the magnetic field fluctuation spectrum. Internal instabilities and dynamics of these discontinuities are believed to be responsible for magnetic field energy dissipation and corresponding charged particle acceleration and heating. Accurate modeling of these phenomena requires detailed investigation of transient current formation and evolution. By examining such evolution using a unique data set compiled from observations of the same solar wind flow by two spacecraft at Earth’s and Mars’s orbits, we show that it consists of several processes: discontinuity thinning (decrease in thickness normalized by the ion inertial length), intensification of currents normalized to the proton thermal current (i.e., the product of proton charge, density, and thermal velocity), and increase in the compressional component of magnetic field variations across discontinuities. The significant proton temperature variation around most observed discontinuities indicates possible proton heating. Plasma velocity jumps across the discontinuities are well correlated with Alfvén velocity changes. We discuss possible explanations of the observed discontinuity evolution. We also compare the observed evolution with predictions of models describing discontinuity formation due to Alfvén wave steepening. Our results show that discontinuity modeling likely requires taking into account both the effects of nonlinear Alfvén wave dynamics and solar wind expansion.

Interacting tilt and kink instabilities in repelling current channels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keppens, R.; Porth, O.; Xia, C., E-mail: rony.keppens@wis.kuleuven.be

2014-11-01

We present a numerical study in resistive magnetohydrodynamics (MHD) where the initial equilibrium configuration contains adjacent, oppositely directed, parallel current channels. Since oppositely directed current channels repel, the equilibrium is liable to an ideal magnetohydrodynamic tilt instability. This tilt evolution, previously studied in planar settings, involves two magnetic islands or flux ropes, which on Alfvénic timescales undergo a combined rotation and separation. This in turn leads to the creation of (near) singular current layers, posing severe challenges to numerical approaches. Using our open-source grid-adaptive MPI-AMRVAC software, we revisit the planar evolution case in compressible MHD, as well as its extensionmore » to two-and-a-half-dimensional (2.5D) and full three-dimensional (3D) scenarios. As long as the third dimension can be ignored, pure tilt evolutions result that are hardly affected by out of plane magnetic field components. In all 2.5D runs, our simulations do show secondary tearing type disruptions throughout the near singular current sheets in the far nonlinear saturation regime. In full 3D runs, both current channels can be liable to additional ideal kink deformations. We discuss the effects of having both tilt and kink instabilities acting simultaneously in the violent, reconnection-dominated evolution. In 3D, both the tilt and the kink instabilities can be stabilized by tension forces. As a concrete space plasma application, we argue that interacting tilt-kink instabilities in repelling current channels provide a novel route to initiate solar coronal mass ejections, distinctly different from the currently favored pure kink or torus instability routes.« less

Morphosedimentary evolution of carbonate sandy beaches at decadal scale : case study in Reunion Island , Indian Ocean

NASA Astrophysics Data System (ADS)

Mahabot, Marie-Myriam; Pennober, Gwenaelle; Suanez, Serge; Troadec, Roland; Delacourt, Christophe

2017-04-01

Global change introduce a lot of uncertainties concerning future trajectory of beaches by directly or indirectly modifying major driving factors. An improved understanding of the past shoreline evolution may help for anticipate future coastline response. However, in tropical environment, studies concerning carbonate beaches dynamics are scarce compared to open sandy beaches. Consequently, coral reef protected beaches morphological adjustment is still poorly understood and long-term evolution rate are poorly quantified in these specific environment. In this context, La Reunion Island, insular department of France located in Indian Ocean, constitute a favoured laboratory. This high volcanic island possesses 25 km of carbonate beaches which experience hydrodynamic forcing specific from tropical environment: cyclonic swell during summer and long period swell during winter. Because of degraded coral reef health and high anthropogenic pressure, 50% of the beaches are in erosion since 1970s. Beach survey has been conducted since 1990s by scientist and are now encompassed as pilot site within a French observatory network which guarantee long-term survey with high resolution observational techniques. Thus, La Reunion Island is one of the rare carbonate beach to be surveyed since 20 years. This study aims to examined and quantify beach response at decadal scale on carbonate sandy beaches of Reunion Island. The study focus on 12 km of beaches from Cap Champagne to the Passe de Trois-Bassins. The analyze of 15 beach profile data originated from historical and DGPS beach topographic data confirm long term trend to erosion. Sediment lost varies between 0.5 and 2 m3.yr-1 since 1998. However longshore current have led to accretion of some part of beach compartment with rate of 0.7 to 1.6 m3.yr-1. Wave climate was examined from in-situ measurement over 15 years and show that extreme waves associated with tropical cyclones and long period swell play a major role in beach dynamics. Swell frequency and intensity are both determinant for beach evolution.

The Taxonomy of Blue Amorphous Galaxies. II. Structure and Evolution

NASA Astrophysics Data System (ADS)

Marlowe, Amanda T.; Meurer, Gerhardt R.; Heckman, Timothy M.

1999-09-01

Dwarf galaxies play an important role in our understanding of galaxy formation and evolution, and starbursts are believed to affect the structure and evolution of dwarf galaxies strongly. We have therefore embarked on a systematic study of 12 of the nearest dwarf galaxies thought to be undergoing bursts of star formation. These were selected primarily by their morphological type (blue ``amorphous'' galaxies). We show that these blue amorphous galaxies are not physically distinguishable from dwarfs selected as starbursting by other methods, such as blue compact dwarfs (BCDs) and H II galaxies. All these classes exhibit surface brightness profiles that are exponential in the outer regions (r>~1.5re) but often have a predominantly central blue excess, suggesting a young burst in an older, redder galaxy. Typically, the starbursting ``cores'' are young (~107-108 yr) events compared to the older (~109-1010 yr) underlying galaxy (the ``envelope''). The ratio of the core to envelope in blue light ranges from essentially zero to about 2. These starbursts are therefore modest events involving only a few percent of the stellar mass. The envelopes have surface brightnesses that are much higher than typical dwarf irregular (dI) galaxies, so it is unlikely that there is a straightforward evolutionary relation between typical dIs and dwarf starburst galaxies. Instead we suggest that amorphous galaxies may repeatedly cycle through starburst and quiescent phases, corresponding to the galaxies with strong and weak/absent cores, respectively. Once amorphous galaxies use up the available gas (either through star formation or galactic winds) so that star formation is shut off, the faded remnants would strongly resemble dwarf elliptical galaxies. However, in the current cosmological epoch, this is evidently a slow process that is the aftermath of a series of many weak, recurring bursts. Present-day dE's must have experienced more rapid and intense evolution than this in the distant past.

Quantitative Imaging in Cancer Evolution and Ecology

PubMed Central

Grove, Olya; Gillies, Robert J.

2013-01-01

Cancer therapy, even when highly targeted, typically fails because of the remarkable capacity of malignant cells to evolve effective adaptations. These evolutionary dynamics are both a cause and a consequence of cancer system heterogeneity at many scales, ranging from genetic properties of individual cells to large-scale imaging features. Tumors of the same organ and cell type can have remarkably diverse appearances in different patients. Furthermore, even within a single tumor, marked variations in imaging features, such as necrosis or contrast enhancement, are common. Similar spatial variations recently have been reported in genetic profiles. Radiologic heterogeneity within tumors is usually governed by variations in blood flow, whereas genetic heterogeneity is typically ascribed to random mutations. However, evolution within tumors, as in all living systems, is subject to Darwinian principles; thus, it is governed by predictable and reproducible interactions between environmental selection forces and cell phenotype (not genotype). This link between regional variations in environmental properties and cellular adaptive strategies may permit clinical imaging to be used to assess and monitor intratumoral evolution in individual patients. This approach is enabled by new methods that extract, report, and analyze quantitative, reproducible, and mineable clinical imaging data. However, most current quantitative metrics lack spatialness, expressing quantitative radiologic features as a single value for a region of interest encompassing the whole tumor. In contrast, spatially explicit image analysis recognizes that tumors are heterogeneous but not well mixed and defines regionally distinct habitats, some of which appear to harbor tumor populations that are more aggressive and less treatable than others. By identifying regional variations in key environmental selection forces and evidence of cellular adaptation, clinical imaging can enable us to define intratumoral Darwinian dynamics before and during therapy. Advances in image analysis will place clinical imaging in an increasingly central role in the development of evolution-based patient-specific cancer therapy. © RSNA, 2013 PMID:24062559

A multi-wavelength study of the evolution of early-type galaxies in groups: the ultraviolet view

NASA Astrophysics Data System (ADS)

Rampazzo, R.; Mazzei, P.; Marino, A.; Bianchi, L.; Plana, H.; Trinchieri, G.; Uslenghi, M.; Wolter, A.

2018-04-01

The ultraviolet-optical colour magnitude diagram of rich galaxy groups is characterised by a well developed Red Sequence, a Blue Cloud and the so-called Green Valley. Loose, less evolved groups of galaxies which are probably not virialised yet may lack a well defined Red Sequence. This is actually explained in the framework of galaxy evolution. We are focussing on understanding galaxy migration towards the Red Sequence, checking for signatures of such a transition in their photometric and morphological properties. We report on the ultraviolet properties of a sample of early-type (ellipticals+S0s) galaxies inhabiting the Red Sequence. The analysis of their structures, as derived by fitting a Sérsic law to their ultraviolet luminosity profiles, suggests the presence of an underlying disk. This is the hallmark of dissipation processes that still must have a role to play in the evolution of this class of galaxies. Smooth particle hydrodynamic simulations with chemo-photometric implementations able to match the global properties of our targets are used to derive their evolutionary paths through ultraviolet-optical colour magnitude diagrams, providing some fundamental information such as the crossing time through the Green Valley, which depends on their luminosity. The transition from the Blue Cloud to the Red Sequence takes several Gyrs, being about 3-5 Gyr for the brightest galaxies and longer for fainter ones, if occurring. The photometric study of nearby galaxy structures in the ultraviolet is seriously hampered by either the limited field of view of the cameras (e.g., in Hubble Space Telescope) or by the low spatial resolution of the images (e.g., in the Galaxy Evolution Explorer). Current missions equipped with telescopes and cameras sensitive to ultraviolet wavelengths, such as Swift- UVOT and Astrosat-UVIT, provide a relatively large field of view and a better resolution than the Galaxy Evolution Explorer. More powerful ultraviolet instruments (size, resolution and field of view) are obviously bound to yield fundamental advances in the accuracy and depth of the surface photometry and in the characterisation of the galaxy environment.

Planform Dynamics of a Mixed Bedrock-Alluvial Meandering River

NASA Astrophysics Data System (ADS)

Rhoads, B. L.; Konsoer, K. M.; Best, J.; Garcia, M. H.; Abad, J. D.

2013-12-01

The planform evolution of meandering rivers involves dynamic interactions among planform geometry, three-dimensional flow structure, bed morphology, sediment transport, and bank resistance. Modes of interaction among these factors in different types of bends have yet to be completely determined. This paper examines flow structure, bed morphology, and planform evolution in three different types of bends on the Wabash River, Illinois: an elongated loop with forested banks and extensive bedrock at the downstream end of the bend (Horseshoe Bend), an elongated loop with unforested banks and local bedrock control within the bend (Maier Bend), and a series of simple bends with forested banks and no bedrock control. Data consist of velocity measurements obtained between May 2011 and February 2013 for bankfull or near-bankfull flows using acoustic Doppler current profilers. Rates of migration and planform evolution were determined through GIS-based analysis of historical aerial photography from 1938 to present, including annual photos in recent years. Lidar data, sediment samples, and multi-beam echosounding data provide information on bed morphology, on the spatial extent of bedrock, and on bank materials. Horseshoe Bend has not moved substantially over the historical period of record. This lack of migration is in part related to extensive bedrock control, but also reflects high near-bank flow resistance produced by LWD and the relatively high resistance of bank materials to erosion. At Maier Bend, migration rates are high due to low resistance of bank materials to erosion, resulting in bend extension; however, the pattern of extension has been strongly influenced by the local outcropping of bedrock into the channel. In the simple bends, planform evolution has been dominated by translation, despite migration of the channel into forested sections of the floodplain. Bed morphology in these bends, especially the structure of point bars, strongly influences flow structure, resulting in high velocities near the outer bank well downstream of the bend apex. The results show that bedrock control can have an important influence on the planform evolution of mixed alluvial-bedrock rivers, yet also highlight the substantive effects of planform geometry, bed morphology, and bank resistance on bend development in these types of rivers.

Structure and Evolution of the Central Appalachians from the Mantle to the Surface: Results from the MAGIC Project

NASA Astrophysics Data System (ADS)

Long, M. D.; Benoit, M. H.; Evans, R. L.; King, S. D.; Kirby, E.; Aragon, J. C.; Miller, S. R.; Liu, S.; Elsenbeck, J.

2017-12-01

The eastern margin of North America has undergone multiple episodes of orogenesis and rifting, yielding the surface geology and topography visible today. It is poorly known, however, how the crust and mantle lithosphere have responded to these tectonic forces, and how geologic units preserved at the surface relate to deeper structures. Furthermore, the evolution of Appalachian topography through time, which reflects a complex interplay among erosion, lithology, and mantle flow, remains a major outstanding problem. The MAGIC project involves a multidisciplinary, collaborative effort to understand the structure and evolution of the central Appalachians, from the mantle to the surface. New images of the lithosphere derived from a passive broadband seismic array and a magnetotelluric deployment demonstrate significant along-strike lateral variability across the MAGIC transect. We observe a sharp change in crustal thickness across the eastern edge of the Appalachians, with a deeper Moho beneath the mountains than suggested by simple isostatic models. We find evidence for a relatively shallow lithosphere-asthenosphere boundary (LAB) beneath the Appalachians, with the thinnest LAB coinciding with the location of Eocene volcanism in and around Harrisonburg, VA. This observation is consistent with lithospheric loss as a mechanism for Eocene volcanic activity. Observations of seismic anisotropy suggest deformation of the mantle lithosphere associated with both Appalachian orogenesis and later Mesozoic rifting, with an observable component of anisotropy due to present-day mantle flow. Geodynamic models of mantle flow using a variety of tomographic models and density scaling relationships are being used to generate predictions of dynamic topography and plate motions for comparison with observations, and are currently being refined to incorporate realistic lithospheric morphology based on imaging results. Models of present-day erosion rates throughout the Appalachians from stream profile analysis show particularly fast erosion rates just to the west of Harrisonburg. Integration of results from the MAGIC project is yielding new insight into the structure and evolution of the central Appalachians and into the processes associated with orogenesis, rifting, and post-rift evolution of the passive margin.

Application of a range of turbulence energy models to the determination of M4 tidal current profiles

NASA Astrophysics Data System (ADS)

Xing, Jiuxing; Davies, Alan M.

1996-04-01

A fully nonlinear, three-dimensional hydrodynamic model of the Irish Sea, using a range of turbulence energy sub-models, is used to examine the influence of the turbulence closure method upon the vertical variation of the current profile of the fundamental and higher harmonics of the tide in the region. Computed tidal current profiles are compared with previous calculations using a spectral model with eddy viscosity related to the flow field. The model has a sufficiently fine grid to resolve the advection terms, in particular the advection of turbulence and momentum. Calculations show that the advection of turbulence energy does not have a significant influence upon the current profile of either the fundamental or higher harmonic of the tide, although the advection of momentum is important in the region of headlands. The simplification of the advective terms by only including them in their vertically integrated form does not appear to make a significant difference to current profiles, but does reduce the computational effort by a significant amount. Computed current profiles both for the fundamental and the higher harmonic determined with a prognostic equation for turbulence and an algebraic mixing length formula, are as accurate as those determined with a two prognostic equation model (the so called q2- q2l model), provided the mixing length is specified correctly. A simple, flow-dependent eddy viscosity with a parabolic variation of viscosity also performs equally well.

Mass spectrometry based proteomics profiling as diagnostic tool in oncology: current status and future perspective.

PubMed

Findeisen, Peter; Neumaier, Michael

2009-01-01

Proteomics analysis has been heralded as a novel tool for identifying new and specific biomarkers that may improve diagnosis and monitoring of various disease states. Recent years have brought a number of proteomics profiling technologies. Although proteomics profiling has resulted in the detection of disease-associated differences and modification of proteins, current proteomics technologies display certain limitations that are hampering the introduction of these new technologies into clinical laboratory diagnostics and routine applications. In this review, we summarize current advances in mass spectrometry based biomarker discovery. The promises and challenges of this new technology are discussed with particular emphasis on diagnostic perspectives of mass-spectrometry based proteomics profiling for malignant diseases.

Kinetic simulations of the stability of a plasma confined by the magnetic field of a current rod

NASA Astrophysics Data System (ADS)

Tonge, J.; Leboeuf, J. N.; Huang, C.; Dawson, J. M.

2003-09-01

The kinetic stability of a plasma in the magnetic field of a current rod is investigated for various temperature and density profiles using three-dimensional particle-in-cell simulations. Such a plasma obeys similar physics to a plasma in a dipole magnetic field, while it is easier to perform computer simulations, and do theoretical analysis, of a plasma in the field of a current rod. Simple energy principle calculations and simulations with a variety of temperature and density profiles show that the plasma is stable to interchange for pressure profiles proportional to r-10/3. As predicted by theory the simulations also show that the density profile will be stationary as long as density is proportional to r-2 even though the temperature profile may not be stable.

In operando neutron diffraction study of the temperature and current rate-dependent phase evolution of LiFePO4 in a commercial battery

NASA Astrophysics Data System (ADS)

Sharma, N.; Yu, D. H.; Zhu, Y.; Wu, Y.; Peterson, V. K.

2017-02-01

In operando NPD data of electrodes in lithium-ion batteries reveal unusual LiFePO4 phase evolution after the application of a thermal step and at high current. At low current under ambient conditions the LiFePO4 to FePO4 two-phase reaction occurs during the charge process, however, following a thermal step and at higher current this reaction appears at the end of charge and continues into the next electrochemical step. The same behavior is observed for the FePO4 to LiFePO4 transition, occurring at the end of discharge and continuing into the following electrochemical step. This suggests that the bulk (or the majority of the) electrode transformation is dependent on the battery's history, current, or temperature. Such information concerning the non-equilibrium evolution of an electrode allows a direct link between the electrode's functional mechanism that underpins lithium-ion battery behavior and the real-life operating conditions of the battery, such as variable temperature and current, to be made.

Correlated evolution of body and fin morphology in the cichlid fishes.

PubMed

Feilich, Kara L

2016-10-01

Body and fin shapes are chief determinants of swimming performance in fishes. Different configurations of body and fin shapes can suit different locomotor specializations. The success of any configuration is dependent upon the hydrodynamic interactions between body and fins. Despite the importance of body-fin interactions for swimming, there are few data indicating whether body and fin configurations evolve in concert, or whether these structures vary independently. The cichlid fishes are a diverse family whose well-studied phylogenetic relationships make them ideal for the study of macroevolution of ecomorphology. This study measured body, and caudal and median fin morphology from radiographs of 131 cichlid genera, using morphometrics and phylogenetic comparative methods to determine whether these traits exhibit correlated evolution. Partial least squares canonical analysis revealed that body, caudal fin, dorsal fin, and anal fin shapes all exhibited strong correlated evolution consistent with locomotor ecomorphology. Major patterns included the evolution of deep body profiles with long fins, suggestive of maneuvering specialization; and the evolution of narrow, elongate caudal peduncles with concave tails, a combination that characterizes economical cruisers. These results demonstrate that body shape evolution does not occur independently of other traits, but among a suite of other morphological changes that augment locomotor specialization. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

The effect of Electron Cyclotron Heating on density fluctuations at ion and electron scales in ITER Baseline Scenario discharges on the DIII-D tokamak

DOE PAGES

Marinoni, Alessandro; Pinsker, Robert I.; Porkolab, Miklos; ...

2017-08-01

Experiments simulating the ITER Baseline Scenario on the DIII-D tokamak show that torque-free pure electron heating, when coupled to plasmas subject to a net co-current beam torque, affects density fluctuations at electron scales on a sub-confinement time scale, whereas fluctuations at ion scales change only after profiles have evolved to a new stationary state. Modifications to the density fluctuations measured by the Phase Contrast Imaging diagnostic (PCI) are assessed by analyzing the time evolution following the switch-off of Electron Cyclotron Heating (ECH), thus going from mixed beam/ECH to pure neutral beam heating at fixed β N . Within 20 msmore » after turning off ECH, the intensity of fluctuations is observed to increase at frequencies higher than 200 kHz; in contrast, fluctuations at lower frequency are seen to decrease in intensity on a longer time scale, after other equilibrium quantities have evolved. Non-linear gyro-kinetic modeling at ion and electron scales scales suggest that, while the low frequency response of the diagnostic is consistent with the dominant ITG modes being weakened by the slow-time increase in flow shear, the high frequency response is due to prompt changes to the electron temperature profile that enhance electron modes and generate a larger heat flux and an inward particle pinch. Furthermore, these results suggest that electron heated regimes in ITER will feature multi-scale fluctuations that might affect fusion performance via modifications to profiles.« less

Conjugal properties of the Sinorhizobium meliloti plasmid mobilome.

PubMed

Pistorio, Mariano; Giusti, María A; Del Papa, María F; Draghi, Walter O; Lozano, Mauricio J; Tejerizo, Gonzalo Torres; Lagares, Antonio

2008-09-01

The biology and biochemistry of plasmid transfer in soil bacteria is currently under active investigation because of its central role in prokaryote adaptation and evolution. In this work, we examined the conjugal properties of the cryptic plasmids present in a collection of the N(2)-fixing legume-symbiont Sinorhizobium meliloti. The study was performed on 65 S. meliloti isolates recovered from 25 humic soils of Argentina, which were grouped into 22 plasmid-profile types [i.e. plasmid operational taxonomic units (OTUs)]. The cumulative Shannon index calculated for the observed plasmid profiles showed a clear saturation plateau, thus indicating an adequate representation of the S. meliloti plasmid-profile types in the isolates studied. The results show that isolates of nearly 14% of the plasmid OTUs hosted transmissible plasmids and that isolates of 29% of the plasmid OTUs were able to retransfer the previously characterized mobilizable-cryptic plasmid pSmeLPU88b to a third recipient strain. It is noteworthy that isolates belonging to 14% of the plasmid OTUs proved to be refractory to the entrance of the model plasmid pSmeLPU88b, suggesting either the presence of surface exclusion phenomena or the occurrence of restriction incompatibility with the incoming replicon. Incompatibility for replication between resident plasmids and plasmid pSmeLPU88b was observed in c. 20% of the OTUs. The results reported here reveal a widespread compatibility among the conjugal functions of the cryptic plasmids in S. meliloti, and this fact, together with the observed high proportion of existing donor genotypes, points to the extrachromosomal compartment of the species as being an extremely active plasmid mobilome.

Modular assembly of transposable element arrays by microsatellite targeting in the guayule and rice genomes.

PubMed

Valdes Franco, José A; Wang, Yi; Huo, Naxin; Ponciano, Grisel; Colvin, Howard A; McMahan, Colleen M; Gu, Yong Q; Belknap, William R

2018-04-19

Guayule (Parthenium argentatum A. Gray) is a rubber-producing desert shrub native to Mexico and the United States. Guayule represents an alternative to Hevea brasiliensis as a source for commercial natural rubber. The efficient application of modern molecular/genetic tools to guayule improvement requires characterization of its genome. The 1.6 Gb guayule genome was sequenced, assembled and annotated. The final 1.5 Gb assembly, while fragmented (N 50  = 22 kb), maps > 95% of the shotgun reads and is essentially complete. Approximately 40,000 transcribed, protein encoding genes were annotated on the assembly. Further characterization of this genome revealed 15 families of small, microsatellite-associated, transposable elements (TEs) with unexpected chromosomal distribution profiles. These SaTar (Satellite Targeted) elements, which are non-autonomous Mu-like elements (MULEs), were frequently observed in multimeric linear arrays of unrelated individual elements within which no individual element is interrupted by another. This uniformly non-nested TE multimer architecture has not been previously described in either eukaryotic or prokaryotic genomes. Five families of similarly distributed non-autonomous MULEs (microsatellite associated, modularly assembled) were characterized in the rice genome. Families of TEs with similar structures and distribution profiles were identified in sorghum and citrus. The sequencing and assembly of the guayule genome provides a foundation for application of current crop improvement technologies to this plant. In addition, characterization of this genome revealed SaTar elements with distribution profiles unique among TEs. Satar targeting appears based on an alternative MULE recombination mechanism with the potential to impact gene evolution.

Evolution of Cuticular Hydrocarbons in the Hymenoptera: a Meta-Analysis.

PubMed

Kather, Ricarda; Martin, Stephen J

2015-10-01

Chemical communication is the oldest form of communication, spreading across all forms of life. In insects, cuticular hydrocarbons (CHC) function as chemical cues for the recognition of mates, species, and nest-mates in social insects. Although much is known about the function of individual hydrocarbons and their biosynthesis, a phylogenetic overview is lacking. Here, we review the CHC profiles of 241 species of Hymenoptera, one of the largest and most important insect orders, which includes the Symphyta (sawflies), the polyphyletic Parasitica (parasitoid wasps), and the Aculeata (wasps, bees, and ants). We investigated whether these taxonomic groups differed in the presence and absence of CHC classes and whether the sociality of a species (solitarily vs. social) had an effect on CHC profile complexity. We found that the main CHC classes (i.e., n-alkanes, alkenes, and methylalkanes) were all present early in the evolutionary history of the Hymenoptera, as evidenced by their presence in ancient Symphyta and primitive Parasitica wasps. Throughout all groups within the Hymenoptera, the more complex a CHC the fewer species that produce it, which may reflect the Occam's razor principle that insects' only biosynthesize the most simple compound that fulfil its needs. Surprisingly, there was no difference in the complexity of CHC profiles between social and solitary species, with some of the most complex CHC profiles belonging to the Parasitica. This profile complexity has been maintained in the ants, but some specialization in biosynthetic pathways has led to a simplification of profiles in the aculeate wasps and bees. The absence of CHC classes in some taxa or species may be due to gene silencing or down-regulation rather than gene loss, as demonstrated by sister species having highly divergent CHC profiles, and cannot be predicted by their phylogenetic history. The presence of highly complex CHC profiles prior to the vast radiation of the social Hymenoptera indicates a 'spring-loaded' system where the diversity of CHC needed for the complex communication systems of social insects were already present for natural selection to act upon, rather than having evolved independently. This diversity may have aided the multiple independent evolution of sociality within the Aculeata.

Self-similarity of temperature profiles in distant galaxy clusters: the quest for a universal law

NASA Astrophysics Data System (ADS)

Baldi, A.; Ettori, S.; Molendi, S.; Gastaldello, F.

2012-09-01

Context. We present the XMM-Newton temperature profiles of 12 bright (LX > 4 × 1044 erg s-1) clusters of galaxies at 0.4 < z < 0.9, having an average temperature in the range 5 ≲ kT ≲ 11 keV. Aims: The main goal of this paper is to study for the first time the temperature profiles of a sample of high-redshift clusters, to investigate their properties, and to define a universal law to describe the temperature radial profiles in galaxy clusters as a function of both cosmic time and their state of relaxation. Methods: We performed a spatially resolved spectral analysis, using Cash statistics, to measure the temperature in the intracluster medium at different radii. Results: We extracted temperature profiles for the clusters in our sample, finding that all profiles are declining toward larger radii. The normalized temperature profiles (normalized by the mean temperature T500) are found to be generally self-similar. The sample was subdivided into five cool-core (CC) and seven non cool-core (NCC) clusters by introducing a pseudo-entropy ratio σ = (TIN/TOUT) × (EMIN/EMOUT)-1/3 and defining the objects with σ < 0.6 as CC clusters and those with σ ≥ 0.6 as NCC clusters. The profiles of CC and NCC clusters differ mainly in the central regions, with the latter exhibiting a slightly flatter central profile. A significant dependence of the temperature profiles on the pseudo-entropy ratio σ is detected by fitting a function of r and σ, showing an indication that the outer part of the profiles becomes steeper for higher values of σ (i.e. transitioning toward the NCC clusters). No significant evidence of redshift evolution could be found within the redshift range sampled by our clusters (0.4 < z < 0.9). A comparison of our high-z sample with intermediate clusters at 0.1 < z < 0.3 showed how the CC and NCC cluster temperature profiles have experienced some sort of evolution. This can happen because higher z clusters are at a less advanced stage of their formation and did not have enough time to create a relaxed structure, which is characterized by a central temperature dip in CC clusters and by flatter profiles in NCC clusters. Conclusions: This is the first time that a systematic study of the temperature profiles of galaxy clusters at z > 0.4 has been attempted. We were able to define the closest possible relation to a universal law for the temperature profiles of galaxy clusters at 0.1 < z < 0.9, showing a dependence on both the relaxation state of the clusters and the redshift. Appendix A is only available in electronic form at http://www.aanda.org

Does evolution matter?: a case study in Brazil of the effects of an evolutionary-thinking academic atmosphere in postgraduate students' belief in God/religious belief.

PubMed

Dias, Ivan A; Willemart, Rodrigo H; Marques, Antonio C

2012-06-01

Although the theory of evolution is more than 150 years old, a substantial proportion of the world population does not mention it when explaining the origin of human beings. The usual alternative conception is offered by creationism, one of the main obstacles to full acceptance of evolution in many countries. National polls have demonstrated that schooling and religiosity are negatively correlated, with scientists being one of the least religious professionals. Herein we analyzed both (1) the profile of 1st semester undergraduate students and (2), thesis and dissertations, concerning religious and evolutionary thoughts from Biology and Veterinary Schools at the largest university of South America. We have shown that students of Biology are biased towards evolution before they enter university and also that the presence of an evolutionary-thinking academic atmosphere influences the deism/religiosity beliefs of postgraduate students.

Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution.

PubMed

Uchi, Ryutaro; Takahashi, Yusuke; Niida, Atsushi; Shimamura, Teppei; Hirata, Hidenari; Sugimachi, Keishi; Sawada, Genta; Iwaya, Takeshi; Kurashige, Junji; Shinden, Yoshiaki; Iguchi, Tomohiro; Eguchi, Hidetoshi; Chiba, Kenichi; Shiraishi, Yuichi; Nagae, Genta; Yoshida, Kenichi; Nagata, Yasunobu; Haeno, Hiroshi; Yamamoto, Hirofumi; Ishii, Hideshi; Doki, Yuichiro; Iinuma, Hisae; Sasaki, Shin; Nagayama, Satoshi; Yamada, Kazutaka; Yachida, Shinichi; Kato, Mamoru; Shibata, Tatsuhiro; Oki, Eiji; Saeki, Hiroshi; Shirabe, Ken; Oda, Yoshinao; Maehara, Yoshihiko; Komune, Shizuo; Mori, Masaki; Suzuki, Yutaka; Yamamoto, Ken; Aburatani, Hiroyuki; Ogawa, Seishi; Miyano, Satoru; Mimori, Koshi

2016-02-01

Understanding intratumor heterogeneity is clinically important because it could cause therapeutic failure by fostering evolutionary adaptation. To this end, we profiled the genome and epigenome in multiple regions within each of nine colorectal tumors. Extensive intertumor heterogeneity is observed, from which we inferred the evolutionary history of the tumors. First, clonally shared alterations appeared, in which C>T transitions at CpG site and CpG island hypermethylation were relatively enriched. Correlation between mutation counts and patients' ages suggests that the early-acquired alterations resulted from aging. In the late phase, a parental clone was branched into numerous subclones. Known driver alterations were observed frequently in the early-acquired alterations, but rarely in the late-acquired alterations. Consistently, our computational simulation of the branching evolution suggests that extensive intratumor heterogeneity could be generated by neutral evolution. Collectively, we propose a new model of colorectal cancer evolution, which is useful for understanding and confronting this heterogeneous disease.