Long-term fluctuations in circalunar Beach aggregations of the box jellyfish Alatina moseri in Hawaii, with links to environmental variability.

PubMed

Chiaverano, Luciano M; Holland, Brenden S; Crow, Gerald L; Blair, Landy; Yanagihara, Angel A

2013-01-01

The box jellyfish Alatina moseri forms monthly aggregations at Waikiki Beach 8-12 days after each full moon, posing a recurrent hazard to swimmers due to painful stings. We present an analysis of long-term (14 years: Jan 1998- Dec 2011) changes in box jellyfish abundance at Waikiki Beach. We tested the relationship of beach counts to climate and biogeochemical variables over time in the North Pacific Sub-tropical Gyre (NPSG). Generalized Additive Models (GAM), Change-Point Analysis (CPA), and General Regression Models (GRM) were used to characterize patterns in box jellyfish arrival at Waikiki Beach 8-12 days following 173 consecutive full moons. Variation in box jellyfish abundance lacked seasonality, but exhibited dramatic differences among months and among years, and followed an oscillating pattern with significant periods of increase (1998-2001; 2006-2011) and decrease (2001-2006). Of three climatic and 12 biogeochemical variables examined, box jellyfish showed a strong, positive relationship with primary production, >2 mm zooplankton biomass, and the North Pacific Gyre Oscillation (NPGO) index. It is clear that that the moon cycle plays a key role in synchronizing timing of the arrival of Alatina moseri medusae to shore. We propose that bottom-up processes, likely initiated by inter-annual regional climatic fluctuations influence primary production, secondary production, and ultimately regulate food availability, and are therefore important in controlling the inter-annual changes in box jellyfish abundance observed at Waikiki Beach.

Long-Term Fluctuations in Circalunar Beach Aggregations of the Box Jellyfish Alatina moseri in Hawaii, with Links to Environmental Variability

PubMed Central

Chiaverano, Luciano M.; Holland, Brenden S.; Crow, Gerald L.; Blair, Landy; Yanagihara, Angel A.

2013-01-01

The box jellyfish Alatina moseri forms monthly aggregations at Waikiki Beach 8–12 days after each full moon, posing a recurrent hazard to swimmers due to painful stings. We present an analysis of long-term (14 years: Jan 1998– Dec 2011) changes in box jellyfish abundance at Waikiki Beach. We tested the relationship of beach counts to climate and biogeochemical variables over time in the North Pacific Sub-tropical Gyre (NPSG). Generalized Additive Models (GAM), Change-Point Analysis (CPA), and General Regression Models (GRM) were used to characterize patterns in box jellyfish arrival at Waikiki Beach 8–12 days following 173 consecutive full moons. Variation in box jellyfish abundance lacked seasonality, but exhibited dramatic differences among months and among years, and followed an oscillating pattern with significant periods of increase (1998–2001; 2006–2011) and decrease (2001–2006). Of three climatic and 12 biogeochemical variables examined, box jellyfish showed a strong, positive relationship with primary production, >2 mm zooplankton biomass, and the North Pacific Gyre Oscillation (NPGO) index. It is clear that that the moon cycle plays a key role in synchronizing timing of the arrival of Alatina moseri medusae to shore. We propose that bottom-up processes, likely initiated by inter-annual regional climatic fluctuations influence primary production, secondary production, and ultimately regulate food availability, and are therefore important in controlling the inter-annual changes in box jellyfish abundance observed at Waikiki Beach. PMID:24194856

Environmental Education and Pupils' Conceptions of Matter.

ERIC Educational Resources Information Center

Hellden, Gustav

1995-01-01

Reports on a seven-year longitudinal study of pupils' (n=25) understanding of ecological processes with emphasis on how their conceptions of matter influence their understanding. Results indicate that initially students expected the plants cultivated in closed transparent boxes to die but later used a "cycle model" to explain how the…

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation.

PubMed

Michael, Sushama; Travé, Gilles; Ramu, Chenna; Chica, Claudia; Gibson, Toby J

2008-02-15

KEN-box-mediated target selection is one of the mechanisms used in the proteasomal destruction of mitotic cell cycle proteins via the APC/C complex. While annotating the Eukaryotic Linear Motif resource (ELM, http://elm.eu.org/), we found that KEN motifs were significantly enriched in human protein entries with cell cycle keywords in the UniProt/Swiss-Prot database-implying that KEN-boxes might be more common than reported. Matches to short linear motifs in protein database searches are not, per se, significant. KEN-box enrichment with cell cycle Gene Ontology terms suggests that collectively these motifs are functional but does not prove that any given instance is so. Candidates were surveyed for native disorder prediction using GlobPlot and IUPred and for motif conservation in homologues. Among >25 strong new candidates, the most notable are human HIPK2, CHFR, CDC27, Dab2, Upf2, kinesin Eg5, DNA Topoisomerase 1 and yeast Cdc5 and Swi5. A similar number of weaker candidates were present. These proteins have yet to be tested for APC/C targeted destruction, providing potential new avenues of research.

Recolonization of bat roost by bat bugs (Cimex pipistrelli): could parasite load be a cause of bat roost switching?

PubMed

Bartonička, Tomáš; Růžičková, Lucie

2013-04-01

Roost ectoparasites are believed to have a negative impact on fitness of their hosts as birds or mammals. Previous studies were mostly focussed on the synchronization between reproduction cycles of ectoparasites and hosts living in infested roosts. However, to date, it has not been examined how fast ectoparasites colonize new, non-infested roosts and thus increasing the impact on the local populations of hosts. The parasite-host model was studied, including bat bugs Cimex pipistrelli and soprano pipistrelles Pipistrellus pygmaeus, where bat behaviour was observed which tended to reduce the parasite load in bat roosts. We investigated (1) whether bats change their roosting behaviour when we discontinued synchronization of their reproduction and the life cycle of the bat bugs and (2) how fast and which stages of bat bugs reoccupy cleaned roosts. In a 3-year field experiment, we removed all bat bugs from six bat boxes in each spring. Pipistrelles bred young in all non-infested boxes during these 3 years. In addition, 8 years of regular observations before this experiment indicate that bats avoided breeding in the same bat boxes at all. Bat bugs were found again in clean boxes in mid-May. However, their densities did not maximise before the beginning of June, before parturition. A re-appearance of bugs was observed after 21-56 days after the first bat visit. Adult bugs, mainly females, colonised cleaned boxes first though at the same time there were a lot of younger and smaller instars in non-manipulated roosts in the vicinity.

Forkhead box transcription factors in embryonic heart development and congenital heart disease.

PubMed

Zhu, Hong

2016-01-01

Embryonic heart development is a very complicated process regulated precisely by a network composed of many genes and signaling pathways in time and space. Forkhead box (Fox, FOX) proteins are a family of transcription factors characterized by the presence of an evolutionary conserved "forkhead"or "winged-helix" DNA-binding domain and able to organize temporal and spatial gene expression during development. They are involved in a wide variety of cellular processes, such as cell cycle progression, proliferation, differentiation, migration, metabolism and DNA damage response. An abundance of studies in model organisms and systems has established that Foxa2, Foxc1/c2, Foxh1 and Foxm1, Foxos and Foxps are important components of the signaling pathways that instruct cardiogenesis and embryonic heart development, playing paramount roles in heart development. The previous studies also have demonstrated that mutations in some of the forkhead box genes and the aberrant expression of forkhead box gene are heavily implicated in the congenital heart disease (CHD) of humans. This review primarily focuses on the current understanding of heart development regulated by forkhead box transcription factors and molecular genetic mechanisms by which forkhead box factors modulate heart development during embryogenesis and organogenesis. This review also summarizes human CHD related mutations in forkhead box genes as well as the abnormal expression of forkhead box gene, and discusses additional possible regulatory mechanisms of the forkhead box genes during embryonic heart development that warrant further investigation. Copyright © 2015 Elsevier Inc. All rights reserved.

Modeling Heavy/Medium-Duty Fuel Consumption Based on Drive Cycle Properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Lijuan; Duran, Adam; Gonder, Jeffrey

This paper presents multiple methods for predicting heavy/medium-duty vehicle fuel consumption based on driving cycle information. A polynomial model, a black box artificial neural net model, a polynomial neural network model, and a multivariate adaptive regression splines (MARS) model were developed and verified using data collected from chassis testing performed on a parcel delivery diesel truck operating over the Heavy Heavy-Duty Diesel Truck (HHDDT), City Suburban Heavy Vehicle Cycle (CSHVC), New York Composite Cycle (NYCC), and hydraulic hybrid vehicle (HHV) drive cycles. Each model was trained using one of four drive cycles as a training cycle and the other threemore » as testing cycles. By comparing the training and testing results, a representative training cycle was chosen and used to further tune each method. HHDDT as the training cycle gave the best predictive results, because HHDDT contains a variety of drive characteristics, such as high speed, acceleration, idling, and deceleration. Among the four model approaches, MARS gave the best predictive performance, with an average absolute percent error of -1.84% over the four chassis dynamometer drive cycles. To further evaluate the accuracy of the predictive models, the approaches were first applied to real-world data. MARS outperformed the other three approaches, providing an average absolute percent error of -2.2% of four real-world road segments. The MARS model performance was then compared to HHDDT, CSHVC, NYCC, and HHV drive cycles with the performance from Future Automotive System Technology Simulator (FASTSim). The results indicated that the MARS method achieved a comparative predictive performance with FASTSim.« less

Investigation of Processes Controlling Mercury Cycling at Midlatitudinal Marine and Inland Sites: Improvements and Applications of A Mercury Box Model

NASA Astrophysics Data System (ADS)

ye, Z.

2013-12-01

Mercury (Hg) is a hazardous pollutant due to the bioaccumulation in food chain. It is emitted to the atmosphere primarily as elemental form, and the long lifetime of which allows global transport. Oxidation of gaseous elemental mercury (GEM) generates reactive gaseous mercury (RGM) which plays an important role in the atmospheric mercury cycle by enhancing the rate of mercury deposition to ecosystem. The present study aimed to investigate the midlatitudinal atmospheric Hg cycling. To achieve that, a mercury chemistry box model was improved by employing the most up-to-date kinetic data for gaseous and aqueous reactions, and was applied to summertime clear sky conditions at three specific sites: Appledore Island (marine site), Thompson Farm (coastal site), and Pack Monadnock (inland site). The model was evaluated using observational data of RGM and pHg (particulate mercury) concentrations from these sites. The simulation results for all three sites showed that HgO, which is produced from oxidation of GEM by O3 and OH, contributed the most (>82%) to the total RGM production. Even in the marine boundary layer, halogen species (mainly Br) only contributed less than 12% to total RGM. The importance of reactions in most updated halogen chemistry has been evaluated. Gas and particle partitioning played an important role in coastal and inland environments. Some abnormally high RGM peaks were found at Appledore Island which may be explained by transport and air-sea exchange. Specific reactions and other processes controlling the diurnal cycles of RGM and pHg at the three sites are still being investigated.

A Network of HMG-box Transcription Factors Regulates Sexual Cycle in the Fungus Podospora anserina

PubMed Central

Ait Benkhali, Jinane; Coppin, Evelyne; Brun, Sylvain; Peraza-Reyes, Leonardo; Martin, Tom; Dixelius, Christina; Lazar, Noureddine; van Tilbeurgh, Herman; Debuchy, Robert

2013-01-01

High-mobility group (HMG) B proteins are eukaryotic DNA-binding proteins characterized by the HMG-box functional motif. These transcription factors play a pivotal role in global genomic functions and in the control of genes involved in specific developmental or metabolic pathways. The filamentous ascomycete Podospora anserina contains 12 HMG-box genes. Of these, four have been previously characterized; three are mating-type genes that control fertilization and development of the fruit-body, whereas the last one encodes a factor involved in mitochondrial DNA stability. Systematic deletion analysis of the eight remaining uncharacterized HMG-box genes indicated that none were essential for viability, but that seven were involved in the sexual cycle. Two HMG-box genes display striking features. PaHMG5, an ortholog of SpSte11 from Schizosaccharomyces pombe, is a pivotal activator of mating-type genes in P. anserina, whereas PaHMG9 is a repressor of several phenomena specific to the stationary phase, most notably hyphal anastomoses. Transcriptional analyses of HMG-box genes in HMG-box deletion strains indicated that PaHMG5 is at the hub of a network of several HMG-box factors that regulate mating-type genes and mating-type target genes. Genetic analyses revealed that this network also controls fertility genes that are not regulated by mating-type transcription factors. This study points to the critical role of HMG-box members in sexual reproduction in fungi, as 11 out of 12 members were involved in the sexual cycle in P. anserina. PaHMG5 and SpSte11 are conserved transcriptional regulators of mating-type genes, although P. anserina and S. pombe diverged 550 million years ago. Two HMG-box genes, SOX9 and its upstream regulator SRY, also play an important role in sex determination in mammals. The P. anserina and S. pombe mating-type genes and their upstream regulatory factor form a module of HMG-box genes analogous to the SRY/SOX9 module, revealing a commonality of sex regulation in animals and fungi. PMID:23935511

GPS-ARM: Computational Analysis of the APC/C Recognition Motif by Predicting D-Boxes and KEN-Boxes

PubMed Central

Ren, Jian; Cao, Jun; Zhou, Yanhong; Yang, Qing; Xue, Yu

2012-01-01

Anaphase-promoting complex/cyclosome (APC/C), an E3 ubiquitin ligase incorporated with Cdh1 and/or Cdc20 recognizes and interacts with specific substrates, and faithfully orchestrates the proper cell cycle events by targeting proteins for proteasomal degradation. Experimental identification of APC/C substrates is largely dependent on the discovery of APC/C recognition motifs, e.g., the D-box and KEN-box. Although a number of either stringent or loosely defined motifs proposed, these motif patterns are only of limited use due to their insufficient powers of prediction. We report the development of a novel GPS-ARM software package which is useful for the prediction of D-boxes and KEN-boxes in proteins. Using experimentally identified D-boxes and KEN-boxes as the training data sets, a previously developed GPS (Group-based Prediction System) algorithm was adopted. By extensive evaluation and comparison, the GPS-ARM performance was found to be much better than the one using simple motifs. With this powerful tool, we predicted 4,841 potential D-boxes in 3,832 proteins and 1,632 potential KEN-boxes in 1,403 proteins from H. sapiens, while further statistical analysis suggested that both the D-box and KEN-box proteins are involved in a broad spectrum of biological processes beyond the cell cycle. In addition, with the co-localization information, we predicted hundreds of mitosis-specific APC/C substrates with high confidence. As the first computational tool for the prediction of APC/C-mediated degradation, GPS-ARM is a useful tool for information to be used in further experimental investigations. The GPS-ARM is freely accessible for academic researchers at: http://arm.biocuckoo.org. PMID:22479614

On the interrelationship between temporal trends in. delta. sup 13 C,. delta. sup 18 O, and. delta. sup 34 S in the world ocean

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffman, A.; Gruszczynski, M.; Malkowski, K.

1991-05-01

The phenomena of (i) inverse correlation between the oceanic carbon and sulfur isotopic curves, and (ii) covariation between the oceanic carbon and oxygen isotopic curves at all their major excursions appear as paradoxes in the current paradigm of global biogeochemical cycles. These phenomena, however, are fully explicable by a model proposing that the ocean alternates between two general modes: stagnant, stratified, and net autotrophic (overfed) ocean, on the one hand, and vigorously mixed and net heterotrophic (hungry) ocean, on the other. This model is in fact strongly supported by the carbon isotopic evidence. The directions of change in the isotopicmore » ratios of carbon, oxygen, and sulfur should be different in the lower, anoxic box of a stratified ocean than in the upper, oxic box; whereas ocean destratification and mixing of the two boxes should lead to coeval shifts in the oceanic isotopic curves of these elements. The model has far-reaching implications for (i) the causal explanation of both secular trends and major shifts in the oceanic isotopic curves, and (ii) for the application of oxygen isotopic data for paleotemperature and paleoenvironment determinations.« less

A dynamic box model of bioactive elements in the southern Taiwan Strait

NASA Astrophysics Data System (ADS)

Hua-Sheng, Hong; Shao-Ling, Shang

1994-06-01

A dynamic box model was applied to study the characteristics of biogeochemical cycling of PO4-P, NO3-N, AOU, POC and PON in the southern Taiwan Strait region based on the field data of the “Minnan Taiwan Bank Fishing Ground Upwelling Ecosystem Study” during the period of Dec. 1987-Nov. 1988. According to the unique hydrological and topographical features of the region, six boxes and three layers were considered in the model. The variation rates and fluxes of elements induced by horizontal current, upwelling, by diffusion, sinking of particles and biogeochemical processes were estimated respectively. Results further confirmed that upwellings had important effects in this region. The nearshore upwelling areas had net input fluxes of nutrients brought by upwelling water, also had high depletion rates of nutrients and production rates of particulate organic matter and dissolved oxygen. The abnormal net production of nutrients in the middle layer, (10-30 m) indicated the important role of bacteria in this high production region. The phytoplankton POC contributed about 28% of the total POC. POC settling out from the euphotic zone was estimated to be 2×10-6 g/(m2·s) which was about 35% of the primary production.

The water balance of the urban Salt Lake Valley: a multiple-box model validated by observations

NASA Astrophysics Data System (ADS)

Stwertka, C.; Strong, C.

2012-12-01

A main focus of the recently awarded National Science Foundation (NSF) EPSCoR Track-1 research project "innovative Urban Transitions and Arid-region Hydro-sustainability (iUTAH)" is to quantify the primary components of the water balance for the Wasatch region, and to evaluate their sensitivity to climate change and projected urban development. Building on the multiple-box model that we developed and validated for carbon dioxide (Strong et al 2011), mass balance equations for water in the atmosphere and surface are incorporated into the modeling framework. The model is used to determine how surface fluxes, ground-water transport, biological fluxes, and meteorological processes regulate water cycling within and around the urban Salt Lake Valley. The model is used to evaluate the hypotheses that increased water demand associated with urban growth in Salt Lake Valley will (1) elevate sensitivity to projected climate variability and (2) motivate more attentive management of urban water use and evaporative fluxes.

Involvement of Retinoblastoma Protein and HBP1 in Histone H10 Gene Expression

PubMed Central

Lemercier, Claudie; Duncliffe, Kym; Boibessot, Isabelle; Zhang, Hui; Verdel, André; Angelov, Dimitar; Khochbin, Saadi

2000-01-01

The histone H10-encoding gene is expressed in vertebrates in differentiating cells during the arrest of proliferation. In the H10 promoter, a specific regulatory element, which we named the H4 box, exhibits features which implicate a role in mediating H10 gene expression in response to both differentiation and cell cycle control signals. For instance, within the linker histone gene family, the H4 box is found only in the promoters of differentiation-associated subtypes, suggesting that it is specifically involved in differentiation-dependent expression of these genes. In addition, an element nearly identical to the H4 box is conserved in the promoters of histone H4-encoding genes and is known to be involved in their cell cycle-dependent expression. The transcription factors interacting with the H10 H4 box were therefore expected to link differentiation-dependent expression of H10 to the cell cycle control machinery. The aim of this work was to identify such transcription factors and to obtain information concerning the regulatory pathway involved. Interestingly, our cloning strategy led to the isolation of a retinoblastoma protein (RB) partner known as HBP1. HBP1, a high-mobility group box transcription factor, interacted specifically with the H10 H4 box and moreover was expressed in a differentiation-dependent manner. We also showed that the HBP1-encoding gene is able to produce different forms of HBP1. Finally, we demonstrated that both HBP1 and RB were involved in the activation of H10 gene expression. We therefore propose that HBP1 mediates a link between the cell cycle control machinery and cell differentiation signals. Through modulating the expression of specific chromatin-associated proteins such as histone H10, HBP1 plays a vital role in chromatin remodeling events during the arrest of cell proliferation in differentiating cells. PMID:10958660

Causes of strong ocean heating during glacial periods

NASA Astrophysics Data System (ADS)

Zimov, N.; Zimov, S. A.

2013-12-01

During the last deglaciation period, the strongest climate changes occurred across the North Atlantic regions. Analyses of borehole temperatures from the Greenland ice sheet have yielded air temperature change estimates of 25°C over the deglaciation period (Dahl-Jensen et al. 1998). Such huge temperature changes cannot currently be explained in the frames of modern knowledge about climate. We propose that glacial-interglacial cycles are connected with gradual warming of ocean interior waters over the course of glaciations and quick transport of accumulated heat from ocean to the atmosphere during the deglaciation periods. Modern day ocean circulation is dominated by thermal convection with cold waters subsiding in the Northern Atlantic and filling up the ocean interior with cold and heavy water. However during the glaciation thermal circulation stopped and ocean circulation was driven by 'haline pumps' -Red and Mediterranean seas connected with ocean with only narrow but deep straights acts as evaporative basins, separating ocean water into fresh water which returns to the ocean surface (precipitation) and warm but salty, and therefore heavy, water which flows down to the ocean floor. This haline pump is stratifying the ocean, allowing warmer water locate under the colder water and thus stopping thermal convection in the ocean. Additional ocean interior warming is driven by geothermal heat flux and decomposition of organic rain. To test the hypothesis we present simple ocean box model that describes thermohaline circulation in the World Ocean. The first box is the Red and Mediterranean sea, the second is united high-latitude seas, the third is the ocean surface, and the fourth the ocean interior. The volume of these water masses and straight cross-sections are taken to be close to real values. We have accepted that the exchange of water between boxes is proportional to the difference in water density in these boxes, Sun energy inputs to the ocean and sea surface are taken as constant. Energy income to the interior box from the geothermal heat flux is also taken as constant. Even though energy inputs are taken as constants, the model manages to recreate the glacial-interglacial cycles. In the glacial periods only haline circulation takes place, the ocean is strongly stratified, and the interior box accumulates heat, while high-latitudes accumulate ice. 112,000 years after glaciation starts, water density on the ocean bottom becomes equal to the density of water in high-latitude seas, strong thermal convection take place, and the ocean quickly (within 14,600 years) releases the heat. The magnitude and duration of such cycles correspond with magnitudes and durations reconstructed for actual glacial-interglacial cycles. From the proposed mechanism it follows that during the glaciations it is likely that the Arctic Ocean was a big reservoir of isotopically light fresh ice. If in a glacial period, the World Ocean were half filled with warm water from the Red Sea and bioproductivity of the ocean declined because of the slow circulation, then carbon storage within the ocean reservoir would decline by ~2000 Pg (10^15 g) of carbon.

Geographical scenario uncertainty in generic fate and exposure factors of toxic pollutants for life-cycle impact assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huijbregts, Mark A.J.; Lundi, Sven; McKone, Thomas E.

In environmental life-cycle assessments (LCA), fate and exposure factors account for the general fate and exposure properties of chemicals under generic environmental conditions by means of 'evaluative' multi-media fate and exposure box models. To assess the effect of using different generic environmental conditions, fate and exposure factors of chemicals emitted under typical conditions of (1) Western Europe, (2) Australia and (3) the United States of America were compared with the multi-media fate and exposure box model USES-LCA. Comparing the results of the three evaluative environments, it was found that the uncertainty in fate and exposure factors for ecosystems and humansmore » due to choice of an evaluative environment, as represented by the ratio of the 97.5th and 50th percentile, is between a factor 2 and 10. Particularly, fate and exposure factors of emissions causing effects in fresh water ecosystems and effects on human health have relatively high uncertainty. This uncertainty i s mainly caused by the continental difference in the average soil erosion rate, the dimensions of the fresh water and agricultural soil compartment, and the fraction of drinking water coming from ground water.« less

Continental-scale river flow in climate models

NASA Technical Reports Server (NTRS)

Miller, James R.; Russell, Gary L.; Caliri, Guilherme

1994-01-01

The hydrologic cycle is a major part of the global climate system. There is an atmospheric flux of water from the ocean surface to the continents. The cycle is closed by return flow in rivers. In this paper a river routing model is developed to use with grid box climate models for the whole earth. The routing model needs an algorithm for the river mass flow and a river direction file, which has been compiled for 4 deg x 5 deg and 2 deg x 2.5 deg resolutions. River basins are defined by the direction files. The river flow leaving each grid box depends on river and lake mass, downstream distance, and an effective flow speed that depends on topography. As input the routing model uses monthly land source runoff from a 5-yr simulation of the NASA/GISS atmospheric climate model (Hansen et al.). The land source runoff from the 4 deg x 5 deg resolution model is quartered onto a 2 deg x 2.5 deg grid, and the effect of grid resolution is examined. Monthly flow at the mouth of the world's major rivers is compared with observations, and a global error function for river flow is used to evaluate the routing model and its sensitivity to physical parameters. Three basinwide parameters are introduced: the river length weighted by source runoff, the turnover rate, and the basinwide speed. Although the values of these parameters depend on the resolution at which the rivers are defined, the values should converge as the grid resolution becomes finer. When the routing scheme described here is coupled with a climate model's source runoff, it provides the basis for closing the hydrologic cycle in coupled atmosphere-ocean models by realistically allowing water to return to the ocean at the correct location and with the proper magnitude and timing.

Early Cone Setting in Picea abies acrocona Is Associated with Increased Transcriptional Activity of a MADS Box Transcription Factor1[W][OA

PubMed Central

Uddenberg, Daniel; Reimegård, Johan; Clapham, David; Almqvist, Curt; von Arnold, Sara; Emanuelsson, Olof; Sundström, Jens F.

2013-01-01

Conifers normally go through a long juvenile period, for Norway spruce (Picea abies) around 20 to 25 years, before developing male and female cones. We have grown plants from inbred crosses of a naturally occurring spruce mutant (acrocona). One-fourth of the segregating acrocona plants initiate cones already in their second growth cycle, suggesting control by a single locus. The early cone-setting properties of the acrocona mutant were utilized to identify candidate genes involved in vegetative-to-reproductive phase change in Norway spruce. Poly(A+) RNA samples from apical and basal shoots of cone-setting and non-cone-setting plants were subjected to high-throughput sequencing (RNA-seq). We assembled and investigated 33,383 expressed putative protein-coding acrocona transcripts. Eight transcripts were differentially expressed between selected sample pairs. One of these (Acr42124_1) was significantly up-regulated in apical shoot samples from cone-setting acrocona plants, and the encoded protein belongs to the MADS box gene family of transcription factors. Using quantitative real-time polymerase chain reaction with independently derived plant material, we confirmed that the MADS box gene is up-regulated in both needles and buds of cone-inducing shoots when reproductive identity is determined. Our results constitute important steps for the development of a rapid cycling model system that can be used to study gene function in conifers. In addition, our data suggest the involvement of a MADS box transcription factor in the vegetative-to-reproductive phase change in Norway spruce. PMID:23221834

Improving metabolic efficiency of the reverse beta-oxidation cycle by balancing redox cofactor requirement.

PubMed

Wu, Junjun; Zhang, Xia; Zhou, Peng; Huang, Jiaying; Xia, Xiudong; Li, Wei; Zhou, Ziyu; Chen, Yue; Liu, Yinghao; Dong, Mingsheng

2017-11-01

Previous studies have made many exciting achievements on pushing the functional reversal of beta-oxidation cycle (r-BOX) to more widespread adoption for synthesis of a wide variety of fuels and chemicals. However, the redox cofactor requirement for the efficient operation of r-BOX remains unclear. In this work, the metabolic efficiency of r-BOX for medium-chain fatty acid (C 6 -C 10 , MCFA) production was optimized by redox cofactor engineering. Stoichiometric analysis of the r-BOX pathway and further experimental examination identified NADH as a crucial determinant of r-BOX process yield. Furthermore, the introduction of formate dehydrogenase from Candida boidinii using fermentative inhibitor byproduct formate as a redox NADH sink improved MCFA titer from initial 1.2g/L to 3.1g/L. Moreover, coupling of increasing the supply of acetyl-CoA with NADH to achieve fermentative redox balance enabled product synthesis at maximum titers. To this end, the acetate re-assimilation pathway was further optimized to increase acetyl-CoA availability associated with the new supply of NADH. It was found that the acetyl-CoA synthetase activity and intracellular ATP levels constrained the activity of acetate re-assimilation pathway, and 4.7g/L of MCFA titer was finally achieved after alleviating these two limiting factors. To the best of our knowledge, this represented the highest titer reported to date. These results demonstrated that the key constraint of r-BOX was redox imbalance and redox engineering could further unleash the lipogenic potential of this cycle. The redox engineering strategies could be applied to acetyl-CoA-derived products or other bio-products requiring multiple redox cofactors for biosynthesis. Copyright © 2017 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Simulated Carbon Cycling in a Model Microbial Mat.

NASA Astrophysics Data System (ADS)

Decker, K. L.; Potter, C. S.

2006-12-01

We present here the novel addition of detailed organic carbon cycling to our model of a hypersaline microbial mat ecosystem. This ecosystem model, MBGC (Microbial BioGeoChemistry), simulates carbon fixation through oxygenic and anoxygenic photosynthesis, and the release of C and electrons for microbial heterotrophs via cyanobacterial exudates and also via a pool of dead cells. Previously in MBGC, the organic portion of the carbon cycle was simplified into a black-box rate of accumulation of simple and complex organic compounds based on photosynthesis and mortality rates. We will discuss the novel inclusion of fermentation as a source of carbon and electrons for use in methanogenesis and sulfate reduction, and the influence of photorespiration on labile carbon exudation rates in cyanobacteria. We will also discuss the modeling of decomposition of dead cells and the ultimate release of inorganic carbon. The detailed modeling of organic carbon cycling is important to the accurate representation of inorganic carbon flux through the mat, as well as to accurate representation of growth models of the heterotrophs under different environmental conditions. Because the model ecosystem is an analog of ancient microbial mats that had huge impacts on the atmosphere of early earth, this MBGC can be useful as a biological component to either early earth models or models of other planets that potentially harbor life.

Cardiovascular and Affective Outcomes of Active Gaming: Using the Nintendo Wii as a Cardiovascular Training Tool

PubMed Central

Naugle, Keith E.; Naugle, Kelly M.; Wikstrom, Erik A.

2014-01-01

Naugle, KE, Naugle, KM, and Wikstrom, EA. Cardiovascular and affective outcomes of active gaming: Using the Nintendo Wii as a cardiovascular training tool. J Strength Cond Res 28(2): 443–451, 2014–Active-video gaming is purported to produce similar cardiovascular responses as aerobic fitness activities. This study compared the emotional and cardiovascular effects of Wii games with those of traditional exercise in college-aged adults with different exercise backgrounds. Specifically, the percentage of heart rate reserve, rate of perceived exertion (RPE), level of enjoyment, and Positive and Negative Affect Schedule scores were compared between subjects who reported exercising frequently at high intensities (high-intensity exerciser group: age = 20.18 years [0.87]; Height = 165.23 cm [9.97]; Mass = 62.37 kg [11.61]), N = 11 and those who exercise more often at lower intensities (low-intensity exercisers group: age = 20.72 years [1.19]; Height = 164.39 cm [8.05]; Mass = 68.04 kg [10.71]), N = 11. The subjects completed six 20-minute exercises sessions: treadmill walking, stationary cycling, and Wii's Tennis, Boxing, Cycling, and Step. The low-intensity exerciser group achieved a greater percentage of heart rate reserve (a) during traditional exercise compared with that during Wii boxing, (b) playing Wii boxing compared with that for Wii tennis, and (c) playing Wii boxing compared with that when the high-intensity exercisers group played any Wii games (p < 0.05). The RPE was greater for boxing and cycling compared with that for tennis and step (p < 0.05). Ratings of enjoyment and the increase in positive emotion were greater for boxing and for tennis compared with those for traditional exercises (p < 0.05). Results suggest that Wii boxing shows the greatest potential as a cardiovascular fitness tool among the Wii games, particularly for individuals who typically exercise at lower intensities. PMID:23660574

The Framework for 0-D Atmospheric Modeling (F0AM) v3.1

NASA Technical Reports Server (NTRS)

Wolfe, Glenn M.; Marvin, Margaret R.; Roberts, Sandra J.; Travis, Katherine R.; Liao, Jin

2016-01-01

The Framework for 0-D Atmospheric Modeling(F0AM) is a flexible and user-friendly MATLAB-based platform for simulation of atmospheric chemistry systems. The F0AM interface incorporates front-end configuration of observational constraints and model setups, making it readily adaptable to simulation of photochemical chambers, Lagrangian plumes, and steady-state or time-evolving solar cycles. Six different chemical mechanisms and three options for calculation of photolysis frequencies are currently available. Example simulations are presented to illustrate model capabilities and, more generally, highlight some of the advantages and challenges of 0-D box modeling.

Screening the Medicines for Malaria Venture Pathogen Box across Multiple Pathogens Reclassifies Starting Points for Open-Source Drug Discovery

PubMed Central

Sykes, Melissa L.; Jones, Amy J.; Shelper, Todd B.; Simpson, Moana; Lang, Rebecca; Poulsen, Sally-Ann; Sleebs, Brad E.

2017-01-01

ABSTRACT Open-access drug discovery provides a substantial resource for diseases primarily affecting the poor and disadvantaged. The open-access Pathogen Box collection is comprised of compounds with demonstrated biological activity against specific pathogenic organisms. The supply of this resource by the Medicines for Malaria Venture has the potential to provide new chemical starting points for a number of tropical and neglected diseases, through repurposing of these compounds for use in drug discovery campaigns for these additional pathogens. We tested the Pathogen Box against kinetoplastid parasites and malaria life cycle stages in vitro. Consequently, chemical starting points for malaria, human African trypanosomiasis, Chagas disease, and leishmaniasis drug discovery efforts have been identified. Inclusive of this in vitro biological evaluation, outcomes from extensive literature reviews and database searches are provided. This information encompasses commercial availability, literature reference citations, other aliases and ChEMBL number with associated biological activity, where available. The release of this new data for the Pathogen Box collection into the public domain will aid the open-source model of drug discovery. Importantly, this will provide novel chemical starting points for drug discovery and target identification in tropical disease research. PMID:28674055

Screening the Medicines for Malaria Venture Pathogen Box across Multiple Pathogens Reclassifies Starting Points for Open-Source Drug Discovery.

PubMed

Duffy, Sandra; Sykes, Melissa L; Jones, Amy J; Shelper, Todd B; Simpson, Moana; Lang, Rebecca; Poulsen, Sally-Ann; Sleebs, Brad E; Avery, Vicky M

2017-09-01

Open-access drug discovery provides a substantial resource for diseases primarily affecting the poor and disadvantaged. The open-access Pathogen Box collection is comprised of compounds with demonstrated biological activity against specific pathogenic organisms. The supply of this resource by the Medicines for Malaria Venture has the potential to provide new chemical starting points for a number of tropical and neglected diseases, through repurposing of these compounds for use in drug discovery campaigns for these additional pathogens. We tested the Pathogen Box against kinetoplastid parasites and malaria life cycle stages in vitro Consequently, chemical starting points for malaria, human African trypanosomiasis, Chagas disease, and leishmaniasis drug discovery efforts have been identified. Inclusive of this in vitro biological evaluation, outcomes from extensive literature reviews and database searches are provided. This information encompasses commercial availability, literature reference citations, other aliases and ChEMBL number with associated biological activity, where available. The release of this new data for the Pathogen Box collection into the public domain will aid the open-source model of drug discovery. Importantly, this will provide novel chemical starting points for drug discovery and target identification in tropical disease research. Copyright © 2017 Duffy et al.

Orbit and sampling requirements: TRMM experience

NASA Technical Reports Server (NTRS)

North, Gerald

1993-01-01

The Tropical Rainfall Measuring Mission (TRMM) concept originated in 1984. Its overall goal is to produce datasets that can be used in the improvement of general circulation models. A primary objective is a multi-year data stream of monthly averages of rain rate over 500 km boxes over the tropical oceans. Vertical distributions of the hydrometers, related to latent heat profiles, and the diurnal cycle of rainrates are secondary products believed to be accessible. The mission is sponsored jointly by the U.S. and Japan. TRMM is an approved mission with launch set for 1997. There are many retrieval and ground truth issues still being studied for TRMM, but here we concentrate on sampling since it is the single largest term in the error budget. The TRMM orbit plane is inclined by 35 degrees to the equator, which leads to a precession of the visits to a given grid box through the local hours of the day, requiring three to six weeks to complete the diurnal cycle, depending on latitude. For sampling studies we can consider the swath width to be about 700 km.

Facile Synthesis of Three-Dimensional Heteroatom-Doped and Hierarchical Egg-Box-Like Carbons Derived from Moringa oleifera Branches for High-Performance Supercapacitors.

PubMed

Cai, Yijin; Luo, Ying; Xiao, Yong; Zhao, Xiao; Liang, Yeru; Hu, Hang; Dong, Hanwu; Sun, Luyi; Liu, Yingliang; Zheng, Mingtao

2016-12-07

In this paper, we demonstrate that Moringa oleifera branches, a renewable biomass waste with abundant protein content, can be employed as novel precursor to synthesize three-dimensional heteroatom-doped and hierarchical egg-box-like carbons (HEBLCs) by a facile room-temperature pretreatment and direct pyrolysis process. The as-prepared HEBLCs possess unique egg-box-like frameworks, high surface area, and interconnected porosity as well as the doping of heteroatoms (oxygen and nitrogen), endowing its excellent electrochemical performances (superior capacity, high rate capability, and outstanding cycling stability). Therefore, the resultant HEBLC manifests a maximum specific capacitance of 355 F g -1 at current density of 0.5 A g -1 and remarkable rate performance. Moreover, 95% of capacitance retention of HEBLCs can be also achieved after 20 000 charge-discharge cycles at an extremely high current density (20 A g -1 ), indicating a prominent cycling stability. Furthermore, the as-assembled HEBLC//HEBLC symmetric supercapacitor displays a superior energy density of 20 Wh kg -1 in aqueous electrolyte and remarkable capacitance retention (95.6%) after 10 000 charge-discharge cycles. This work provides an environmentally friendly and reliable method to produce higher-valued carbon nanomaterials from renewable biomass wastes for energy storage applications.

An intermediate-complexity model for simulating marine biogeochemistry in deep time: Validation against the modern global ocean

NASA Astrophysics Data System (ADS)

Romaniello, Stephen J.; Derry, Louis A.

2010-08-01

We present a new high-resolution 1-D intermediate-complexity box model (ICBM) of ocean biogeochemical processes for paleoceanographic applications. The model contains 79 reservoirs in three regions that should be generally applicable throughout much of Earth history: (1) a stratified gyre region, (2) a high-latitude convective region, and (3) an upwelling region analogous to those found associated with eastern boundary currents. Transport processes are modeled as exchange fluxes between boxes and by eddy diffusion terms. Significant improvement in the representation of middepth oxygen budgets was achieved by implementing nonlocal mixing between the high-latitude surface and gyre thermocline reservoirs. The biogeochemical submodel simulates coupled C, N, P, O, and S systematics with explicit representation of microbial populations, using a process-based approach. Primary production follows Redfield stoichiometry, while water column remineralization is depth- and redox couple-dependent. Settling particulate organic matter is incorporated into a benthic submodel that accounts for burial and remineralization. The C/P ratio of burial depends on bottom water oxygen. Denitrification takes place both by classical and anammox pathways. The ICBM was tested against modern oceanographic observations from the Global Ocean Data Analysis Project, Joint Global Ocean Flux Study, and other databases. Comparisons of model output with circulation tracers including θ, salinity, CFC-12, and radiocarbon permit a test of the physical exchange scheme. Vertical profiles of biogeochemically reactive components in each of the three regions are in good agreement with observations. Under modern conditions the upwelling zone displays a pronounced oxygen minimum zone and water column denitrification, while these are not present in the high-latitude or gyre regions. Model-generated global fluxes also compare well to independent estimates of primary production, burial, and phosphorous and nitrogen cycling. The ICBM appears to adequately simulate the long-term (kyr) evolution of several biogeochemical cycles and improves on previous box models in several important ways. In a companion paper, the model's performance under euxinic conditions is tested against modern Black Sea data. The simple and adaptable structure of the model should make it applicable to a wide range of paleoceanographic problems. The model source code is available in MATLABTM 7 m-files provided as auxiliary material.

Evaluating indoor exposure modeling alternatives for LCA: A case study in the vehicle repair industry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Demou, Evangelia; Hellweg, Stefanie; Wilson, Michael P.

2009-05-01

We evaluated three exposure models with data obtained from measurements among workers who use"aerosol" solvent products in the vehicle repair industry and with field experiments using these products to simulate the same exposure conditions. The three exposure models were the: 1) homogeneously-mixed-one-box model, 2) multi-zone model, and 3) eddy-diffusion model. Temporally differentiated real-time breathing zone volatile organic compound (VOC) concentration measurements, integrated far-field area samples, and simulated experiments were used in estimating parameters, such as emission rates, diffusivity, and near-field dimensions. We assessed differences in model input requirements and their efficacy for predictive modeling. The One-box model was not ablemore » to resemble the temporal profile of exposure concentrations, but it performed well concerning time-weighted exposure over extended time periods. However, this model required an adjustment for spatial concentration gradients. Multi-zone models and diffusion-models may solve this problem. However, we found that the reliable use of both these models requires extensive field data to appropriately define pivotal parameters such as diffusivity or near-field dimensions. We conclude that it is difficult to apply these models for predicting VOC exposures in the workplace. However, for comparative exposure scenarios in life-cycle assessment they may be useful.« less

Thermo-mechanical Design Methodology for ITER Cryodistribution cold boxes

NASA Astrophysics Data System (ADS)

Shukla, Vinit; Patel, Pratik; Das, Jotirmoy; Vaghela, Hitensinh; Bhattacharya, Ritendra; Shah, Nitin; Choukekar, Ketan; Chang, Hyun-Sik; Sarkar, Biswanath

2017-04-01

The ITER cryo-distribution (CD) system is in charge of proper distribution of the cryogen at required mass flow rate, pressure and temperature level to the users; namely the superconducting (SC) magnets and cryopumps (CPs). The CD system is also capable to use the magnet structures as a thermal buffer in order to operate the cryo-plant as much as possible at a steady state condition. A typical CD cold box is equipped with mainly liquid helium (LHe) bath, heat exchangers (HX’s), cryogenic valves, filter, heaters, cold circulator, cold compressor and process piping. The various load combinations which are likely to occur during the life cycle of the CD cold boxes are imposed on the representative model and impacts on the system are analyzed. This study shows that break of insulation vacuum during nominal operation (NO) along with seismic event (Seismic Level-2) is the most stringent load combination having maximum stress of 224 MPa. However, NO+SMHV (Séismes Maximaux Historiquement Vraisemblables = Maximum Historically Probable Earthquakes) load combination is having the least safety margin and will lead the basis of the design of the CD system and its sub components. This paper presents and compares the results of different load combinations which are likely to occur on a typical CD cold box.

Evidence of Microbial Regulation of Biogeochemical Cycles from a Study on Methane Flux and Land Use Change

PubMed Central

Nazaries, Loïc; Pan, Yao; Bodrossy, Levente; Baggs, Elizabeth M.; Millard, Peter; Murrell, J. Colin

2013-01-01

Microbes play an essential role in ecosystem functions, including carrying out biogeochemical cycles, but are currently considered a black box in predictive models and all global biodiversity debates. This is due to (i) perceived temporal and spatial variations in microbial communities and (ii) lack of ecological theory explaining how microbes regulate ecosystem functions. Providing evidence of the microbial regulation of biogeochemical cycles is key for predicting ecosystem functions, including greenhouse gas fluxes, under current and future climate scenarios. Using functional measures, stable-isotope probing, and molecular methods, we show that microbial (community diversity and function) response to land use change is stable over time. We investigated the change in net methane flux and associated microbial communities due to afforestation of bog, grassland, and moorland. Afforestation resulted in the stable and consistent enhancement in sink of atmospheric methane at all sites. This change in function was linked to a niche-specific separation of microbial communities (methanotrophs). The results suggest that ecological theories developed for macroecology may explain the microbial regulation of the methane cycle. Our findings provide support for the explicit consideration of microbial data in ecosystem/climate models to improve predictions of biogeochemical cycles. PMID:23624469

An orc1 allele with a mutated APC motif is female sterile with amplification defects.

PubMed

Park, So Young; Asano, Maki

2012-08-01

The origin recognition complex 1 (ORC1) is the largest subunit of the ORC, the heteromeric hexamer. ORC1 is an essential component of the pre-replicative complex (pre-RC) that licenses eukaryote DNA replication origins. The levels of ORC1 fluctuate during the mitotic cell cycle in Drosophila as well as in some human cells. Proteolysis of ORC1 occurs at the end of M phase in Drosophila, which is mediated by the anaphase-promoting complex (APC), and in late S phase in human cells by Skip-Cullin-F box (SCF). Previously we showed that proteolysis of ORC1 by APC is mediated by the ORC1 destruction box (the O-box), an APC motif conserved among species yet distinct from the D-box or KEN-box. Recently we showed that replacing the O-box with the D-box (ORC1O→D) changes the degradation profile of ORC1 during a canonical cell cycle. Here we report further characterization of the ORC1O→D allele that turned out to be a useful tool to examine the function of ORC1 in other modes of DNA replication during oogenesis. In endoreplication stages ORC1O→D does not change any DNA content profiles, consistent with our previous finding that ORC is dispensable for endoreplication. However, in amplification stage replication efficiency of ORC1O→D is drastically reduced, which resulted in amplification defects that led to thin egg shell phenotype. Taken together, our analyses show that orc1 allele newly identified is female sterile and possesses a unique feature of phenotypes that are distinct in different modes of DNA replication.

EKG-based detection of deep brain stimulation in fMRI studies.

PubMed

Fiveland, Eric; Madhavan, Radhika; Prusik, Julia; Linton, Renee; Dimarzio, Marisa; Ashe, Jeffrey; Pilitsis, Julie; Hancu, Ileana

2018-04-01

To assess the impact of synchronization errors between the assumed functional MRI paradigm timing and the deep brain stimulation (DBS) on/off cycling using a custom electrocardiogram-based triggering system METHODS: A detector for measuring and predicting the on/off state of cycling deep brain stimulation was developed and tested in six patients in office visits. Three-electrode electrocardiogram measurements, amplified by a commercial bio-amplifier, were used as input for a custom electronics box (e-box). The e-box transformed the deep brain stimulation waveforms into transistor-transistor logic pulses, recorded their timing, and propagated it in time. The e-box was used to trigger task-based deep brain stimulation functional MRI scans in 5 additional subjects; the impact of timing accuracy on t-test values was investigated in a simulation study using the functional MRI data. Following locking to each patient's individual waveform, the e-box was shown to predict stimulation onset with an average absolute error of 112 ± 148 ms, 30 min after disconnecting from the patients. The subsecond accuracy of the e-box in predicting timing onset is more than adequate for our slow varying, 30-/30-s on/off stimulation paradigm. Conversely, the experimental deep brain stimulation onset prediction accuracy in the absence of the e-box, which could be off by as much as 4 to 6 s, could significantly decrease activation strength. Using this detector, stimulation can be accurately synchronized to functional MRI acquisitions, without adding any additional hardware in the MRI environment. Magn Reson Med 79:2432-2439, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Modeling 400-500-kyr Pleistocene carbon isotope cyclicity through variations in the dissolved organic carbon pool

NASA Astrophysics Data System (ADS)

Ma, Wentao; Wang, Pinxian; Tian, Jun

2017-05-01

The carbon isotope (δ13C) record from the Plio-Pleistocene shows prominent 400-kyr cycles with maximum values at eccentricity minima during the Pliocene. The period extends to 500 kyr in the Pleistocene after 1.6 Ma. Five δ13C maxima occurred at 0.2, 0.5, 1.0, 1.5 and 1.9 Ma over the last 2 Ma. Although several hypotheses have been suggested to explain why the 400-500-kyr cycles are so strong in δ13C records and how they may have originated, the mechanism is still not clear. The aim of this study was to test the dissolved organic carbon (DOC) hypothesis, which was proposed recently to explain this 400-500-kyr cycle in deeper time. We used an intermediate complexity box model that is computationally efficient for studies involving longer timescales. The model incorporates sophisticated microbial processes, dividing the oceanic carbon cycle into a rapid and a slow cycle. The model result suggests that when more nutrients enter the surface ocean, the rapid carbon cycle is more active, and less refractory DOC (RDOC) is produced. The opposite sequence occurs when fewer nutrients enter the ocean. The modeled RDOC concentration and the δ13C of dissolved inorganic carbon (DIC) are anti-correlated with riverine nutrient input. According to mass conservation, the release of isotopically lighter carbon from the RDOC pool leads to lighter DIC δ13C while an increase in the RDOC pool enriches it. The transient simulations produced a one-to-one correspondence between modeled and measured δ13C. This study supports the hypothesis that chemical weathering-induced variations in the DOC pool act as a pacemaker for δ13C changes over 400-500-kyr cycles.

Exploring global carbon turnover and radiocarbon cycling in terrestrial biosphere models

NASA Astrophysics Data System (ADS)

Graven, H. D.; Warren, H.

2017-12-01

The uptake of carbon into terrestrial ecosystems through net primary productivity (NPP) and the turnover of that carbon through various pathways are the fundamental drivers of changing carbon stocks on land, in addition to human-induced and natural disturbances. Terrestrial biosphere models use different formulations for carbon uptake and release, resulting in a range of values in NPP of 40-70 PgC/yr and biomass turnover times of about 25-40 years for the preindustrial period in current-generation models from CMIP5. Biases in carbon uptake and turnover impact simulated carbon uptake and storage in the historical period and later in the century under changing climate and CO2 concentration, however evaluating global-scale NPP and carbon turnover is challenging. Scaling up of plot-scale measurements involves uncertainty due to the large heterogeneity across ecosystems and biomass types, some of which are not well-observed. We are developing the modelling of radiocarbon in terrestrial biosphere models, with a particular focus on decadal 14C dynamics after the nuclear weapons testing in the 1950s-60s, including the impact of carbon flux trends and variability on 14C cycling. We use an estimate of the total inventory of excess 14C in the biosphere constructed by Naegler and Levin (2009) using a 14C budget approach incorporating estimates of total 14C produced by the weapons tests and atmospheric and oceanic 14C observations. By simulating radiocarbon in simple biosphere box models using carbon fluxes from the CMIP5 models, we find that carbon turnover is too rapid in many of the simple models - the models appear to take up too much 14C and release it too quickly. Therefore many CMIP5 models may also simulate carbon turnover that is too rapid. A caveat is that the simple box models we use may not adequately represent carbon dynamics in the full-scale models. Explicit simulation of radiocarbon in terrestrial biosphere models would allow more robust evaluation of biosphere models and the investigation of climate-carbon cycle feedbacks on various timescales. Explicit simulation of radiocarbon and carbon-13 in terrestrial biosphere models of Earth System Models, as well as in ocean models, is recommended by CMIP6 and supported by CMIP6 protocols and forcing datasets.

Coupling of oceanic carbon and nitrogen facilitates spatially resolved quantitative reconstruction of nitrate inventories.

PubMed

Glock, Nicolaas; Erdem, Zeynep; Wallmann, Klaus; Somes, Christopher J; Liebetrau, Volker; Schönfeld, Joachim; Gorb, Stanislav; Eisenhauer, Anton

2018-03-23

Anthropogenic impacts are perturbing the global nitrogen cycle via warming effects and pollutant sources such as chemical fertilizers and burning of fossil fuels. Understanding controls on past nitrogen inventories might improve predictions for future global biogeochemical cycling. Here we show the quantitative reconstruction of deglacial bottom water nitrate concentrations from intermediate depths of the Peruvian upwelling region, using foraminiferal pore density. Deglacial nitrate concentrations correlate strongly with downcore δ 13 C, consistent with modern water column observations in the intermediate Pacific, facilitating the use of δ 13 C records as a paleo-nitrate-proxy at intermediate depths and suggesting that the carbon and nitrogen cycles were closely coupled throughout the last deglaciation in the Peruvian upwelling region. Combining the pore density and intermediate Pacific δ 13 C records shows an elevated nitrate inventory of >10% during the Last Glacial Maximum relative to the Holocene, consistent with a δ 13 C-based and δ 15 N-based 3D ocean biogeochemical model and previous box modeling studies.

Terraforming planet Dune: Climate-vegetation interactions on a sandy planet

NASA Astrophysics Data System (ADS)

Cresto Aleina, F.; Baudena, M.; D'Andrea, F.; Provenzale, A.

2012-04-01

The climate and the biosphere of planet Earth interact in multiple, complicated ways and on many spatial and temporal scales. Some of these processes can be studied with the help of simple mathematical models, as done for the effects of vegetation on albedo in desert areas and for the mechanisms by which terrestrial vegetation affects water fluxes in arid environments. Conceptual models of this kind do not attempt at providing quantitative descriptions of the climate-biosphere interaction, but rather to explore avenues and mechanisms which can play a role in the real system, providing inspiration for further research. In this work, we develop a simple conceptual box model in the spirit illustrated above, to explore whether and how vegetation affects the planetary hydrologic cycle. We imagine a planet with no oceans and whose surface is entirely covered with sand, quite similar to planet Dune of the science-fiction series by Frank Herbert (1965). We suppose that water is entirely in the sand, below the surface. Without vegetation, only evaporation takes place, affecting the upper sand layer for a maximum depth of a few cm. The amount of water that is evaporated in the atmosphere is relatively small, and not sufficient to trigger a full hydrologic cycle. The question is what happens to this planet when vegetation is introduced: the root depth can reach a meter or more, and plant transpiration can then transfer a much larger amount of water to the atmosphere. One may wonder whether the presence of vegetation is sufficient to trigger a hydrologic cycle with enough precipitation to sustain the vegetation itself and, if the answer is positive, what is the minimum vegetation cover that is required to maintain the cycle active. In more precise terms, we want to know whether the introduction of vegetation and of the evapotranspiration feedback allows for the existence of multiple equilibria (or solutions) in the soil-vegetation-atmosphere system. Although the box model introduced here is best formulated in terms of a hypothetical sandy planet, the results can be used to study the hydrologic cycle on wide continental regions of the Earth. On the other hand, our findings show how the definition of a habitable climate may also depend on surface characteristics, and in particular on biosphere and climate interactions.

Evidence for renoxification in the tropical marine boundary layer

NASA Astrophysics Data System (ADS)

Reed, Chris; Evans, Mathew J.; Crilley, Leigh R.; Bloss, William J.; Sherwen, Tomás; Read, Katie A.; Lee, James D.; Carpenter, Lucy J.

2017-03-01

We present 2 years of NOx observations from the Cape Verde Atmospheric Observatory located in the tropical Atlantic boundary layer. We find that NOx mixing ratios peak around solar noon (at 20-30 pptV depending on season), which is counter to box model simulations that show a midday minimum due to OH conversion of NO2 to HNO3. Production of NOx via decomposition of organic nitrogen species and the photolysis of HNO3 appear insufficient to provide the observed noontime maximum. A rapid photolysis of nitrate aerosol to produce HONO and NO2, however, is able to simulate the observed diurnal cycle. This would make it the dominant source of NOx at this remote marine boundary layer site, overturning the previous paradigm according to which the transport of organic nitrogen species, such as PAN, is the dominant source. We show that observed mixing ratios (November-December 2015) of HONO at Cape Verde (˜ 3.5 pptV peak at solar noon) are consistent with this route for NOx production. Reactions between the nitrate radical and halogen hydroxides which have been postulated in the literature appear to improve the box model simulation of NOx. This rapid conversion of aerosol phase nitrate to NOx changes our perspective of the NOx cycling chemistry in the tropical marine boundary layer, suggesting a more chemically complex environment than previously thought.

Packaging waste prevention in the distribution of fruit and vegetables: An assessment based on the life cycle perspective.

PubMed

Tua, Camilla; Nessi, Simone; Rigamonti, Lucia; Dolci, Giovanni; Grosso, Mario

2017-04-01

In recent years, alternative food supply chains based on short distance production and delivery have been promoted as being more environmentally friendly than those applied by the traditional retailing system. An example is the supply of seasonal and possibly locally grown fruit and vegetables directly to customers inside a returnable crate (the so-called 'box scheme'). In addition to other claimed environmental and economic advantages, the box scheme is often listed among the packaging waste prevention measures. To check whether such a claim is soundly based, a life cycle assessment was carried out to verify the real environmental effectiveness of the box scheme in comparison to the Italian traditional distribution. The study focused on two reference products, carrots and apples, which are available in the crate all year round. An experience of a box scheme carried out in Italy was compared with some traditional scenarios where the product is distributed loose or packaged at the large-scale retail trade. The packaging waste generation, 13 impact indicators on environment and human health and energy consumptions were calculated. Results show that the analysed experience of the box scheme, as currently managed, cannot be considered a packaging waste prevention measure when compared with the traditional distribution of fruit and vegetables. The weaknesses of the alternative system were identified and some recommendations were given to improve its environmental performance.

Identification of She3 as an SCFGrr1 Substrate in Budding Yeast

PubMed Central

Wang, Ruiwen; Solomon, Mark J.

2012-01-01

The highly orchestrated progression of the cell cycle depends on the degradation of many regulatory proteins at different cell cycle stages. One of the key cell cycle ubiquitin ligases is the Skp1-cullin-F-box (SCF) complex. Acting in concert with the substrate-binding F-box protein Grr1, SCFGrr1 promotes the degradation of cell cycle regulators as well as various metabolic enzymes. Using a yeast two-hybrid assay with a Grr1 derivative as the bait, we identified She3, which is an adaptor protein in the asymmetric mRNA transport system, as a novel Grr1 substrate. We generated stabilized She3 mutants, which no longer bound to Grr1, and found that the degradation of She3 is not required for regulating asymmetric mRNA transport. However, She3 stabilization leads to slower growth compared to wild-type cells in a co-culture assay, demonstrating that the degradation of She3 by Grr1 is required for optimal cell growth. PMID:23144720

Ignorance is a bliss: Mathematical structure of many-box models

NASA Astrophysics Data System (ADS)

Tylec, Tomasz I.; Kuś, Marek

2018-03-01

We show that the propositional system of a many-box model is always a set-representable effect algebra. In particular cases of 2-box and 1-box models, it is an orthomodular poset and an orthomodular lattice, respectively. We discuss the relation of the obtained results with the so-called Local Orthogonality principle. We argue that non-classical properties of box models are the result of a dual enrichment of the set of states caused by the impoverishment of the set of propositions. On the other hand, quantum mechanical models always have more propositions as well as more states than the classical ones. Consequently, we show that the box models cannot be considered as generalizations of quantum mechanical models and seeking additional principles that could allow us to "recover quantum correlations" in box models are, at least from the fundamental point of view, pointless.

USEtox - The UNEP-SETAC toxicity model: recommended characterisation factors for human toxicity and freshwater ecotoxicity in Life Cycle Impact Assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosenbaum, Ralph K.; Bachmann, Till M.; Swirsky Gold, Lois

2008-02-03

Background, Aim and Scope. In 2005 a comprehensive comparison of LCIA toxicity characterisation models was initiated by the UNEP-SETAC Life Cycle Initiative, directly involving the model developers of CalTOX, IMPACT 2002, USES-LCA, BETR, EDIP, WATSON, and EcoSense. In this paper we describe this model-comparison process and its results--in particular the scientific consensus model developed by the model developers. The main objectives of this effort were (i) to identify specific sources of differences between the models' results and structure, (ii) to detect the indispensable model components, and (iii) to build a scientific consensus model from them, representing recommended practice. Methods. Amore » chemical test set of 45 organics covering a wide range of property combinations was selected for this purpose. All models used this set. In three workshops, the model comparison participants identified key fate, exposure and effect issues via comparison of the final characterisation factors and selected intermediate outputs for fate, human exposure and toxic effects for the test set applied to all models. Results. Through this process, we were able to reduce inter-model variation from an initial range of up to 13 orders of magnitude down to no more than 2 orders of magnitude for any substance. This led to the development of USEtox, a scientific consensus model that contains only the most influential model elements. These were, for example, process formulations accounting for intermittent rain, defining a closed or open system environment, or nesting an urban box in a continental box. Discussion. The precision of the new characterisation factors (CFs) is within a factor of 100-1000 for human health and 10-100 for freshwater ecotoxicity of all other models compared to 12 orders of magnitude variation between the CFs of each model respectively. The achieved reduction of inter-model variability by up to 11 orders of magnitude is a significant improvement.Conclusions. USEtox provides a parsimonious and transparent tool for human health and ecosystem CF estimates. Based on a referenced database, it has now been used to calculate CFs for several thousand substances and forms the basis of the recommendations from UNEP-SETAC's Life Cycle Initiative regarding characterization of toxic impacts in Life Cycle Assessment. Recommendations and Perspectives. We provide both recommended and interim (not recommended and to be used with caution) characterisation factors for human health and freshwater ecotoxicity impacts. After a process of consensus building among stakeholders on a broad scale as well as several improvements regarding a wider and easier applicability of the model, USEtox will become available to practitioners for the calculation of further CFs.« less

Methane and Environmental Change during the Paleocene-Eocene Thermal Maximum (PETM): Modeling the PETM Onset as a Two-stage Event

NASA Technical Reports Server (NTRS)

Carozza, David A.; Mysak, Lawrence A.; Schmidt, Gavin A.

2011-01-01

An atmospheric CH4 box model coupled to a global carbon cycle box model is used to constrain the carbon emission associated with the PETM and assess the role of CH4 during this event. A range of atmospheric and oceanic emission scenarios representing different amounts, rates, and isotopic signatures of emitted carbon are used to model the PETM onset. The first 3 kyr of the onset, a pre-isotope excursion stage, is simulated by the atmospheric release of 900 to 1100 Pg C CH4 with a delta C-13 of -22 to - 30 %. For a global average warming of 3 deg C, a release of CO2 to the ocean and CH4 to the atmosphere totalling 900 to 1400 Pg C, with a delta C-13 of -50 to -60%, simulates the subsequent 1 -kyr isotope excursion stage. To explain the observations, the carbon must have been released over at most 500 years. The first stage results cannot be associated with any known PETM hypothesis. However, the second stage results are consistent with a methane hydrate source. More than a single source of carbon is required to explain the PETM onset.

A scale-invariant cellular-automata model for distributed seismicity

NASA Technical Reports Server (NTRS)

Barriere, Benoit; Turcotte, Donald L.

1991-01-01

In the standard cellular-automata model for a fault an element of stress is randomly added to a grid of boxes until a box has four elements, these are then redistributed to the adjacent boxes on the grid. The redistribution can result in one or more of these boxes having four or more elements in which case further redistributions are required. On the average added elements are lost from the edges of the grid. The model is modified so that the boxes have a scale-invariant distribution of sizes. The objective is to model a scale-invariant distribution of fault sizes. When a redistribution from a box occurs it is equivalent to a characteristic earthquake on the fault. A redistribution from a small box (a foreshock) can trigger an instability in a large box (the main shock). A redistribution from a large box always triggers many instabilities in the smaller boxes (aftershocks). The frequency-size statistics for both main shocks and aftershocks satisfy the Gutenberg-Richter relation with b = 0.835 for main shocks and b = 0.635 for aftershocks. Model foreshocks occur 28 percent of the time.

Influence of dimension box differences and time differences during operations of red box for motorcycles at signalized intersection

NASA Astrophysics Data System (ADS)

Mulyadi, Agah Muhammad

2017-11-01

Performance of signalized intersection has declined due to a large number of motorcycles. The number of motorcycles reached 98.2 million units and the composition of motorcycles has reached around 81.7% of the total composition of vehicles in Indonesia (AISI, 2017). To solve that problem, the red box for motorcycles are provided at the signalized intersection. Red box for the motorcycle at signalized intersections was developed from the concept of Advance Stop Line (ASL) for bicycles. The Red Box was developed to split the queue between motorcycles and other vehicles when waiting at red light. This paper aims to evaluate the influence of the red box dimension and red time operation differences. The survey was conducted as many as 30 cycles of traffic signals per day. The data were analyzed using software IBM SPSS Statistics 20 by using Analysis of Variance (ANOVA) to obtain p-value (significant). The analysis shows that there are insignificant influences between the occupancy rates to the dimension of Red Box. Furthermore, that there is a significant difference that shows the dependency of only motorcycles in the Red Box Area towards red time operation.

Laparoscopic surgical box model training for surgical trainees with no prior laparoscopic experience.

PubMed

Nagendran, Myura; Toon, Clare D; Davidson, Brian R; Gurusamy, Kurinchi Selvan

2014-01-17

Surgical training has traditionally been one of apprenticeship, where the surgical trainee learns to perform surgery under the supervision of a trained surgeon. This is time consuming, costly, and of variable effectiveness. Training using a box model physical simulator - either a video box or a mirrored box - is an option to supplement standard training. However, the impact of this modality on trainees with no prior laparoscopic experience is unknown. To compare the benefits and harms of box model training versus no training, another box model, animal model, or cadaveric model training for surgical trainees with no prior laparoscopic experience. We searched the Cochrane Central Register of Controlled Trials (CENTRAL), MEDLINE, EMBASE, and Science Citation Index Expanded to May 2013. We included all randomised clinical trials comparing box model trainers versus no training in surgical trainees with no prior laparoscopic experience. We also included trials comparing different methods of box model training. Two authors independently identified trials and collected data. We analysed the data with both the fixed-effect and the random-effects models using Review Manager for analysis. For each outcome, we calculated the standardised mean difference (SMD) with 95% confidence intervals (CI) based on intention-to-treat analysis whenever possible. Twenty-five trials contributed data to the quantitative synthesis in this review. All but one trial were at high risk of bias. Overall, 16 trials (464 participants) provided data for meta-analysis of box training (248 participants) versus no supplementary training (216 participants). All the 16 trials in this comparison used video trainers. Overall, 14 trials (382 participants) provided data for quantitative comparison of different methods of box training. There were no trials comparing box model training versus animal model or cadaveric model training. Box model training versus no training: The meta-analysis showed that the time taken for task completion was significantly shorter in the box trainer group than the control group (8 trials; 249 participants; SMD -0.48 seconds; 95% CI -0.74 to -0.22). Compared with the control group, the box trainer group also had lower error score (3 trials; 69 participants; SMD -0.69; 95% CI -1.21 to -0.17), better accuracy score (3 trials; 73 participants; SMD 0.67; 95% CI 0.18 to 1.17), and better composite performance scores (SMD 0.65; 95% CI 0.42 to 0.88). Three trials reported movement distance but could not be meta-analysed as they were not in a format for meta-analysis. There was significantly lower movement distance in the box model training compared with no training in one trial, and there were no significant differences in the movement distance between the two groups in the other two trials. None of the remaining secondary outcomes such as mortality and morbidity were reported in the trials when animal models were used for assessment of training, error in movements, and trainee satisfaction. Different methods of box training: One trial (36 participants) found significantly shorter time taken to complete the task when box training was performed using a simple cardboard box trainer compared with the standard pelvic trainer (SMD -3.79 seconds; 95% CI -4.92 to -2.65). There was no significant difference in the time taken to complete the task in the remaining three comparisons (reverse alignment versus forward alignment box training; box trainer suturing versus box trainer drills; and single incision versus multiport box model training). There were no significant differences in the error score between the two groups in any of the comparisons (box trainer suturing versus box trainer drills; single incision versus multiport box model training; Z-maze box training versus U-maze box training). The only trial that reported accuracy score found significantly higher accuracy score with Z-maze box training than U-maze box training (1 trial; 16 participants; SMD 1.55; 95% CI 0.39 to 2.71). One trial (36 participants) found significantly higher composite score with simple cardboard box trainer compared with conventional pelvic trainer (SMD 0.87; 95% CI 0.19 to 1.56). Another trial (22 participants) found significantly higher composite score with reverse alignment compared with forward alignment box training (SMD 1.82; 95% CI 0.79 to 2.84). There were no significant differences in the composite score between the intervention and control groups in any of the remaining comparisons. None of the secondary outcomes were adequately reported in the trials. The results of this review are threatened by both risks of systematic errors (bias) and risks of random errors (play of chance). Laparoscopic box model training appears to improve technical skills compared with no training in trainees with no previous laparoscopic experience. The impacts of this decreased time on patients and healthcare funders in terms of improved outcomes or decreased costs are unknown. There appears to be no significant differences in the improvement of technical skills between different methods of box model training. Further well-designed trials of low risk of bias and random errors are necessary. Such trials should assess the impacts of box model training on surgical skills in both the short and long term, as well as clinical outcomes when the trainee becomes competent to operate on patients.

Augmented twin-nonlinear two-box behavioral models for multicarrier LTE power amplifiers.

PubMed

Hammi, Oualid

2014-01-01

A novel class of behavioral models is proposed for LTE-driven Doherty power amplifiers with strong memory effects. The proposed models, labeled augmented twin-nonlinear two-box models, are built by cascading a highly nonlinear memoryless function with a mildly nonlinear memory polynomial with cross terms. Experimental validation on gallium nitride based Doherty power amplifiers illustrates the accuracy enhancement and complexity reduction achieved by the proposed models. When strong memory effects are observed, the augmented twin-nonlinear two-box models can improve the normalized mean square error by up to 3 dB for the same number of coefficients when compared to state-of-the-art twin-nonlinear two-box models. Furthermore, the augmented twin-nonlinear two-box models lead to the same performance as previously reported twin-nonlinear two-box models while requiring up to 80% less coefficients.

Black-boxing and cause-effect power

PubMed Central

Albantakis, Larissa; Tononi, Giulio

2018-01-01

Reductionism assumes that causation in the physical world occurs at the micro level, excluding the emergence of macro-level causation. We challenge this reductionist assumption by employing a principled, well-defined measure of intrinsic cause-effect power–integrated information (Φ), and showing that, according to this measure, it is possible for a macro level to “beat” the micro level. Simple systems were evaluated for Φ across different spatial and temporal scales by systematically considering all possible black boxes. These are macro elements that consist of one or more micro elements over one or more micro updates. Cause-effect power was evaluated based on the inputs and outputs of the black boxes, ignoring the internal micro elements that support their input-output function. We show how black-box elements can have more common inputs and outputs than the corresponding micro elements, revealing the emergence of high-order mechanisms and joint constraints that are not apparent at the micro level. As a consequence, a macro, black-box system can have higher Φ than its micro constituents by having more mechanisms (higher composition) that are more interconnected (higher integration). We also show that, for a given micro system, one can identify local maxima of Φ across several spatiotemporal scales. The framework is demonstrated on a simple biological system, the Boolean network model of the fission-yeast cell-cycle, for which we identify stable local maxima during the course of its simulated biological function. These local maxima correspond to macro levels of organization at which emergent cause-effect properties of physical systems come into focus, and provide a natural vantage point for scientific inquiries. PMID:29684020

Intercomparison of the capabilities of simplified climate models to project the effects of aviation CO2 on climate

NASA Astrophysics Data System (ADS)

Khodayari, Arezoo; Wuebbles, Donald J.; Olsen, Seth C.; Fuglestvedt, Jan S.; Berntsen, Terje; Lund, Marianne T.; Waitz, Ian; Wolfe, Philip; Forster, Piers M.; Meinshausen, Malte; Lee, David S.; Lim, Ling L.

2013-08-01

This study evaluates the capabilities of the carbon cycle and energy balance treatments relative to the effect of aviation CO2 emissions on climate in several existing simplified climate models (SCMs) that are either being used or could be used for evaluating the effects of aviation on climate. Since these models are used in policy-related analyses, it is important that the capabilities of such models represent the state of understanding of the science. We compare the Aviation Environmental Portfolio Management Tool (APMT) Impacts climate model, two models used at the Center for International Climate and Environmental Research-Oslo (CICERO-1 and CICERO-2), the Integrated Science Assessment Model (ISAM) model as described in Jain et al. (1994), the simple Linear Climate response model (LinClim) and the Model for the Assessment of Greenhouse-gas Induced Climate Change version 6 (MAGICC6). In this paper we select scenarios to illustrate the behavior of the carbon cycle and energy balance models in these SCMs. This study is not intended to determine the absolute and likely range of the expected climate response in these models but to highlight specific features in model representations of the carbon cycle and energy balance models that need to be carefully considered in studies of aviation effects on climate. These results suggest that carbon cycle models that use linear impulse-response-functions (IRF) in combination with separate equations describing air-sea and air-biosphere exchange of CO2 can account for the dominant nonlinearities in the climate system that would otherwise not have been captured with an IRF alone, and hence, produce a close representation of more complex carbon cycle models. Moreover, results suggest that an energy balance model with a 2-box ocean sub-model and IRF tuned to reproduce the response of coupled Earth system models produces a close representation of the globally-averaged temperature response of more complex energy balance models.

Augmented Twin-Nonlinear Two-Box Behavioral Models for Multicarrier LTE Power Amplifiers

PubMed Central

2014-01-01

A novel class of behavioral models is proposed for LTE-driven Doherty power amplifiers with strong memory effects. The proposed models, labeled augmented twin-nonlinear two-box models, are built by cascading a highly nonlinear memoryless function with a mildly nonlinear memory polynomial with cross terms. Experimental validation on gallium nitride based Doherty power amplifiers illustrates the accuracy enhancement and complexity reduction achieved by the proposed models. When strong memory effects are observed, the augmented twin-nonlinear two-box models can improve the normalized mean square error by up to 3 dB for the same number of coefficients when compared to state-of-the-art twin-nonlinear two-box models. Furthermore, the augmented twin-nonlinear two-box models lead to the same performance as previously reported twin-nonlinear two-box models while requiring up to 80% less coefficients. PMID:24624047

Quantitative interpretation of atmospheric carbon records over the last glacial termination

NASA Astrophysics Data System (ADS)

KöHler, Peter; Fischer, Hubertus; Munhoven, Guy; Zeebe, Richard E.

2005-12-01

The glacial/interglacial rise in atmospheric pCO2 is one of the best known changes in paleoclimate research, yet the cause for it is still unknown. Forcing the coupled ocean-atmosphere-biosphere box model of the global carbon cycle BICYCLE with proxy data over the last glacial termination, we are able to quantitatively reproduce transient variations in pCO2 and its isotopic signatures (δ13C, Δ14C) observed in natural climate archives. The sensitivity of the Box model of the Isotopic Carbon cYCLE (BICYCLE) to high or low latitudinal changes is comparable to other multibox models or more complex ocean carbon cycle models, respectively. The processes considered here ranked by their contribution to the glacial/interglacial rise in pCO2 in decreasing order are: the rise in Southern Ocean vertical mixing rates (>30 ppmv), decreases in alkalinity and carbon inventories (>30 ppmv), the reduction of the biological pump (˜20 ppmv), the rise in ocean temperatures (15-20 ppmv), the resumption of ocean circulation (15-20 ppmv), and coral reef growth (<5 ppmv). The regrowth of the terrestrial biosphere, sea level rise and the increase in gas exchange through reduced sea ice cover operate in the opposite direction, decreasing pCO2 during Termination I by ˜30 ppmv. According to our model the sequence of events during Termination I might have been the following: a reduction of aeolian iron fertilization in the Southern Ocean together with a breakdown in Southern Ocean stratification, the latter caused by rapid sea ice retreat, trigger the onset of the pCO2 increase. After these events the reduced North Atlantic Deep Water (NADW) formation during the Heinrich 1 event and the subsequent resumption of ocean circulation at the beginning of the Bølling-Allerød warm interval are the main processes determining the atmospheric carbon records in the subsequent time period of Termination I. We further deduce that a complete shutdown of the NADW formation during the Younger Dryas was very unlikely. Changes in ocean temperature and the terrestrial carbon storage are the dominant processes explaining atmospheric δ13C after the Bølling-Allerød warm interval.

Crash energy absorption of two-segment crash box with holes under frontal load

NASA Astrophysics Data System (ADS)

Choiron, Moch. Agus; Sudjito, Hidayati, Nafisah Arina

2016-03-01

Crash box is one of the passive safety components which designed as an impact energy absorber during collision. Crash box designs have been developed in order to obtain the optimum crashworthiness performance. Circular cross section was first investigated with one segment design, it rather influenced by its length which is being sensitive to the buckling occurrence. In this study, the two-segment crash box design with additional holes is investigated and deformation behavior and crash energy absorption are observed. The crash box modelling is performed by finite element analysis. The crash test components were impactor, crash box, and fixed rigid base. Impactor and the fixed base material are modelled as a rigid, and crash box material as bilinear isotropic hardening. Crash box length of 100 mm and frontal crash velocity of 16 km/jam are selected. Crash box material of Aluminum Alloy is used. Based on simulation results, it can be shown that holes configuration with 2 holes and ¾ length locations have the largest crash energy absorption. This condition associated with deformation pattern, this crash box model produces axisymmetric mode than other models.

A white-box model of S-shaped and double S-shaped single-species population growth

PubMed Central

Kalmykov, Lev V.

2015-01-01

Complex systems may be mechanistically modelled by white-box modeling with using logical deterministic individual-based cellular automata. Mathematical models of complex systems are of three types: black-box (phenomenological), white-box (mechanistic, based on the first principles) and grey-box (mixtures of phenomenological and mechanistic models). Most basic ecological models are of black-box type, including Malthusian, Verhulst, Lotka–Volterra models. In black-box models, the individual-based (mechanistic) mechanisms of population dynamics remain hidden. Here we mechanistically model the S-shaped and double S-shaped population growth of vegetatively propagated rhizomatous lawn grasses. Using purely logical deterministic individual-based cellular automata we create a white-box model. From a general physical standpoint, the vegetative propagation of plants is an analogue of excitation propagation in excitable media. Using the Monte Carlo method, we investigate a role of different initial positioning of an individual in the habitat. We have investigated mechanisms of the single-species population growth limited by habitat size, intraspecific competition, regeneration time and fecundity of individuals in two types of boundary conditions and at two types of fecundity. Besides that, we have compared the S-shaped and J-shaped population growth. We consider this white-box modeling approach as a method of artificial intelligence which works as automatic hyper-logical inference from the first principles of the studied subject. This approach is perspective for direct mechanistic insights into nature of any complex systems. PMID:26038717

A Study to Determine the Impact of Medical Readiness Programs on Fiscal Year 1987 Resource Utilization at Tripler Army Medical Center

DTIC Science & Technology

1988-10-01

Cycles Man-Hours Management of a Patient with a Drug 5 5 and/or ETOH Abuse Problem Assessment/Oxygen 1 5 5 Wound Drainage Devices ( Ostomy ) 2 5 10...Medical Proficiency Training Supply Cost Item Quantity Unit of Issue Cost Adhesive Tape F 1 Roll 8 0.27 Bag, Ostomy Plastic 3 Each S 3.07 Basin, Emesis...Blood I Box 810.91 Test Strips, Gluc. in Urine 1 Box S 4.37 Test Strips, Urine I Box $26.71 Tube, Blood Collection 15ml 20 Each S 1.13 Wafer, Ostomy 5

Detailed Life Cycle Assessment of Bounty Paper Towel ...

EPA Pesticide Factsheets

Life Cycle Assessment (LCA) is a well-established and informative method of understanding the environmental impacts of consumer products across the entire value chain. However, companies committed to sustainability are interested in more methods that examine their products and activities' impacts. Methods that build on LCA strengths and illuminate other connected but less understood facets, related to social and economic impacts, would provide greater value to decision-makers. This study is a LCA that calculates the potential impacts associated with Bounty® paper towels from two facilities with different production lines, an older one (Albany, Georgia) representing established technology and the other (Box Elder, Utah), a newer state-of-the-art platform. This is unique in that it includes use of Industrial Process Systems Assessment (IPSA), new electricity and pulp data, modeled in open source software, and is the basis for the development of new integrated sustainability metrics (published separately). The new metrics can guide supply chain and manufacturing enhancements, and product design related to environmental protection and resource sustainability. Results of the LCA indicate Box Elder had improvements on environmental impact scores related to air emission indicators, except for particulate matter. Albany had lower water use impacts. After normalization of the results, fossil fuel depletion is the most critical environmental indicator. Pulp production, e

BmCyclin B and BmCyclin B3 are required for cell cycle progression in the silkworm, Bombyx mori.

PubMed

Pan, Minhui; Hong, Kaili; Chen, Xiangyun; Pan, Chun; Chen, Xuemei; Kuang, Xiuxiu; Lu, Cheng

2013-04-01

Cyclin B is an important regulator of the cell cycle G2 to M phase transition. The silkworm genomic database shows that there are two Cyclin B genes in the silkworm (Bombyx mori), BmCyclin B and BmCyclin B3. Using silkworm EST data, the cyclin B3 (EU074796) gene was cloned. Its complete cDNA was 1665 bp with an ORF of 1536 bp derived from seven exons and six introns. The BmCyclin B3 gene encodes 511 amino acids, and the predicted molecular weight is 57.8 kD with an isoelectric point of 9.18. The protein contains one protein damage box and two cyclin boxes. RNA interference-mediated reduction of BmCyclin B and BmCyclin B3 expression induced cell cycle arrest in G2 or M phase in BmN-SWU1 cells, thus inhibiting cell proliferation. These results suggest that BmCyclin B and BmCyclin B3 are necessary for completing the cell cycle in silkworm cells.

Process Guide for the Domain-Specific Software Architectures (DSSA) Process Life Cycle

DTIC Science & Technology

1993-12-01

of box "Things" used and transformed by activities Output Right side of box...Carnegie Mellon University is required not to chsc’lmirate in admission. employment or administration of its programs on the oasis of race. color...natonal Origin sex of hanoicap ,:zlaon of Tit!e VI of.the C~vii RAgtts A - of 964 Tile ’X of ’he Educationai Amendments of 1972 and Sectlon 504 of

Crash energy absorption of two-segment crash box with holes under frontal load

DOE Office of Scientific and Technical Information (OSTI.GOV)

Choiron, Moch Agus, E-mail: agus-choiron@ub.ac.id; Sudjito,; Hidayati, Nafisah Arina

Crash box is one of the passive safety components which designed as an impact energy absorber during collision. Crash box designs have been developed in order to obtain the optimum crashworthiness performance. Circular cross section was first investigated with one segment design, it rather influenced by its length which is being sensitive to the buckling occurrence. In this study, the two-segment crash box design with additional holes is investigated and deformation behavior and crash energy absorption are observed. The crash box modelling is performed by finite element analysis. The crash test components were impactor, crash box, and fixed rigid base.more » Impactor and the fixed base material are modelled as a rigid, and crash box material as bilinear isotropic hardening. Crash box length of 100 mm and frontal crash velocity of 16 km/jam are selected. Crash box material of Aluminum Alloy is used. Based on simulation results, it can be shown that holes configuration with 2 holes and ¾ length locations have the largest crash energy absorption. This condition associated with deformation pattern, this crash box model produces axisymmetric mode than other models.« less

Projected Applications of a "Climate in a Box" Computing System at the NASA Short-Term Prediction Research and Transition (SPoRT) Center

NASA Technical Reports Server (NTRS)

Jedlovec, Gary J.; Molthan, Andrew L.; Zavodsky, Bradley; Case, Jonathan L.; LaFontaine, Frank J.

2010-01-01

The NASA Short-term Prediction Research and Transition (SPoRT) Center focuses on the transition of unique observations and research capabilities to the operational weather community, with a goal of improving short-term forecasts on a regional scale. Advances in research computing have lead to "Climate in a Box" systems, with hardware configurations capable of producing high resolution, near real-time weather forecasts, but with footprints, power, and cooling requirements that are comparable to desktop systems. The SPoRT Center has developed several capabilities for incorporating unique NASA research capabilities and observations with real-time weather forecasts. Planned utilization includes the development of a fully-cycled data assimilation system used to drive 36-48 hour forecasts produced by the NASA Unified version of the Weather Research and Forecasting (WRF) model (NU-WRF). The horsepower provided by the "Climate in a Box" system is expected to facilitate the assimilation of vertical profiles of temperature and moisture provided by the Atmospheric Infrared Sounder (AIRS) aboard the NASA Aqua satellite. In addition, the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments aboard NASA s Aqua and Terra satellites provide high-resolution sea surface temperatures and vegetation characteristics. The development of MODIS normalized difference vegetation index (NVDI) composites for use within the NASA Land Information System (LIS) will assist in the characterization of vegetation, and subsequently the surface albedo and processes related to soil moisture. Through application of satellite simulators, NASA satellite instruments can be used to examine forecast model errors in cloud cover and other characteristics. Through the aforementioned application of the "Climate in a Box" system and NU-WRF capabilities, an end goal is the establishment of a real-time forecast system that fully integrates modeling and analysis capabilities developed within the NASA SPoRT Center, with benefits provided to the operational forecasting community.

Laparoscopic surgical box model training for surgical trainees with limited prior laparoscopic experience.

PubMed

Gurusamy, Kurinchi Selvan; Nagendran, Myura; Toon, Clare D; Davidson, Brian R

2014-03-01

Surgical training has traditionally been one of apprenticeship, where the surgical trainee learns to perform surgery under the supervision of a trained surgeon. This is time consuming, costly, and of variable effectiveness. Training using a box model physical simulator is an option to supplement standard training. However, the value of this modality on trainees with limited prior laparoscopic experience is unknown. To compare the benefits and harms of box model training for surgical trainees with limited prior laparoscopic experience versus standard surgical training or supplementary animal model training. We searched the Cochrane Central Register of Controlled Trials (CENTRAL), MEDLINE, EMBASE, and Science Citation Index Expanded to May 2013. We planned to include all randomised clinical trials comparing box model trainers versus other forms of training including standard laparoscopic training and supplementary animal model training in surgical trainees with limited prior laparoscopic experience. We also planned to include trials comparing different methods of box model training. Two authors independently identified trials and collected data. We analysed the data with both the fixed-effect and the random-effects models using Review Manager 5. For each outcome, we calculated the risk ratio (RR), mean difference (MD), or standardised mean difference (SMD) with 95% confidence intervals (CI) based on intention-to-treat analysis whenever possible. We identified eight trials that met the inclusion criteria. One trial including 17 surgical trainees did not contribute to the meta-analysis. We included seven trials (249 surgical trainees belonging to various postgraduate years ranging from year one to four) in which the participants were randomised to supplementary box model training (122 trainees) versus standard training (127 trainees). Only one trial (50 trainees) was at low risk of bias. The box trainers used in all the seven trials were video trainers. Six trials were conducted in USA and one trial in Canada. The surgeries in which the final assessments were made included laparoscopic total extraperitoneal hernia repairs, laparoscopic cholecystectomy, laparoscopic tubal ligation, laparoscopic partial salpingectomy, and laparoscopic bilateral mid-segment salpingectomy. The final assessments were made on a single operative procedure.There were no deaths in three trials (0/82 (0%) supplementary box model training versus 0/86 (0%) standard training; RR not estimable; very low quality evidence). The other trials did not report mortality. The estimated effect on serious adverse events was compatible with benefit and harm (three trials; 168 patients; 0/82 (0%) supplementary box model training versus 1/86 (1.1%) standard training; RR 0.36; 95% CI 0.02 to 8.43; very low quality evidence). None of the trials reported patient quality of life. The operating time was significantly shorter in the supplementary box model training group versus the standard training group (1 trial; 50 patients; MD -6.50 minutes; 95% CI -10.85 to -2.15). The proportion of patients who were discharged as day-surgery was significantly higher in the supplementary box model training group versus the standard training group (1 trial; 50 patients; 24/24 (100%) supplementary box model training versus 15/26 (57.7%) standard training; RR 1.71; 95% CI 1.23 to 2.37). None of the trials reported trainee satisfaction. The operating performance was significantly better in the supplementary box model training group versus the standard training group (seven trials; 249 trainees; SMD 0.84; 95% CI 0.57 to 1.10).None of the trials compared box model training versus animal model training or versus different methods of box model training. There is insufficient evidence to determine whether laparoscopic box model training reduces mortality or morbidity. There is very low quality evidence that it improves technical skills compared with standard surgical training in trainees with limited previous laparoscopic experience. It may also decrease operating time and increase the proportion of patients who were discharged as day-surgery in the first total extraperitoneal hernia repair after box model training. However, the duration of the benefit of box model training is unknown. Further well-designed trials of low risk of bias and random errors are necessary. Such trials should assess the long-term impact of box model training on clinical outcomes and compare box training with other forms of training.

The effect of box preparation on the strength of glass fiber-reinforced composite inlay-retained fixed partial dentures.

PubMed

Ozcan, Mutlu; Breuklander, Marijn H; Vallittu, Pekka K

2005-04-01

Nonstandardized box dimensions for inlay-retained fixed partial dentures (FPDs) may result in uneven distribution of the forces on the connector region of such restorations. The objective of this in vitro study was to evaluate the effect of box dimensions on the initial and final failure strength of inlay-retained fiber-reinforced composite (FRC) FPDs. Twenty-one inlay-retained FPDs were prepared using FRC (everStick) frameworks with unidirectional fiber reinforcement between mandibular first premolars and first molars. Boxes were prepared using conventional inlay burs (Cerinlay), and small and large ultrasonic tips (SONICSYS approx). Box dimensions were measured after preparation with a digital micrometer. All restorations were subjected to thermal cycling (6000 cycles, 5 degrees C-55 degrees C). Fracture testing was performed in a universal testing machine (1 mm/min). Acoustic emission signals were monitored during loading of the specimens. Initial and final fracture strength values (2-way ANOVA, Bonferroni post hoc tests, alpha =.05) and failure types (Fisher exact test) were statistically compared for each group. Significant differences (P =.0146 and P =.0086) were observed between the groups in the dimensions of the boxes prepared using conventional burs buccolingually (2.8-3.0 mm in molars, 3.1-4.3 mm in premolars) and the small size (2.5-2.9, 2.9-3.8 mm) or large size (2.6-3.8, 3.2-4.9 mm) ultrasonic tips for the premolars and the molars, respectively. No significant differences were found at the initial and final failures between the conventionally prepared group (842 +/- 267 N, 1161 +/- 428 N) and those prepared with either small (1088 +/- 381 N, 1320 +/- 380 N) or large ultrasonic tips (1070 +/- 280 N, 1557 +/- 321 N), respectively. The failure analysis demonstrated no significant difference in failure types but predominant delamination of the veneering resin (85%) in all experimental groups. According to acoustic emission tests, a higher energy level was required for final failure of the FRC FPDs with boxes finished using small ultrasonic tips. Standardized box dimensions showed no significant effect on fracture strength at either initial or final failure of the fiber-reinforced FPDs. The FRC FPDs with boxes refined with small ultrasonic burs required a greater energy level before failure. The type of failure observed after the fracture tests was primarily delamination of the veneering resin.

Global and Local Stress Analyses of McDonnell Douglas Stitched/RFI Composite Wing Stub Box

NASA Technical Reports Server (NTRS)

Wang, John T.

1996-01-01

This report contains results of structural analyses performed in support of the NASA structural testing of an all-composite stitched/RFI (resin film infusion) wing stub box. McDonnell Douglas Aerospace Company designed and fabricated the wing stub box. The analyses used a global/local approach. The global model contains the entire test article. It includes the all-composite stub box, a metallic load-transition box and a metallic wing-tip extension box. The two metallic boxes are connected to the inboard and outboard ends of the composite wing stub box, respectively. The load-transition box was attached to a steel and concrete vertical reaction structure and a load was applied at the tip of the extension box to bend the wing stub box upward. The local model contains an upper cover region surrounding three stringer runouts. In that region, a large nonlinear deformation was identified by the global analyses. A more detailed mesh was used for the local model to obtain more accurate analysis results near stringer runouts. Numerous analysis results such as deformed shapes, displacements at selected locations, and strains at critical locations are included in this report.

FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis

PubMed Central

Deng, Weiwei; Ying, Hua; Helliwell, Chris A.; Taylor, Jennifer M.; Peacock, W. James; Dennis, Elizabeth S.

2011-01-01

FLOWERING LOCUS C (FLC) has a key role in the timing of the initiation of flowering in Arabidopsis. FLC binds and represses two genes that promote flowering, FT and SOC1. We show that FLC binds to many other genes, indicating that it has regulatory roles other than the repression of flowering. We identified 505 FLC binding sites, mostly located in the promoter regions of genes and containing at least one CArG box, the motif known to be associated with MADS-box proteins such as FLC. We examined 40 of the target genes, and 20 showed increased transcript levels in an flc mutant compared with the wild type. Five genes showed decreased expression in the mutant, indicating that FLC binding can result in either transcriptional repression or activation. The genes we identified as FLC targets are involved in developmental pathways throughout the life history of the plant, many of which are associated with reproductive development. FLC is also involved in vegetative development, as evidenced by its binding to SPL15, delaying the progression from juvenile to adult phase. Some of the FLC target genes are also bound by two other MADS-box proteins, AP1 and SEP3, suggesting that MADS-box genes may operate in a network of control at different stages of the life cycle, many ultimately contributing to the development of the reproductive phase of the plant. PMID:21464308

FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis.

PubMed

Deng, Weiwei; Ying, Hua; Helliwell, Chris A; Taylor, Jennifer M; Peacock, W James; Dennis, Elizabeth S

2011-04-19

FLOWERING LOCUS C (FLC) has a key role in the timing of the initiation of flowering in Arabidopsis. FLC binds and represses two genes that promote flowering, FT and SOC1. We show that FLC binds to many other genes, indicating that it has regulatory roles other than the repression of flowering. We identified 505 FLC binding sites, mostly located in the promoter regions of genes and containing at least one CArG box, the motif known to be associated with MADS-box proteins such as FLC. We examined 40 of the target genes, and 20 showed increased transcript levels in an flc mutant compared with the wild type. Five genes showed decreased expression in the mutant, indicating that FLC binding can result in either transcriptional repression or activation. The genes we identified as FLC targets are involved in developmental pathways throughout the life history of the plant, many of which are associated with reproductive development. FLC is also involved in vegetative development, as evidenced by its binding to SPL15, delaying the progression from juvenile to adult phase. Some of the FLC target genes are also bound by two other MADS-box proteins, AP1 and SEP3, suggesting that MADS-box genes may operate in a network of control at different stages of the life cycle, many ultimately contributing to the development of the reproductive phase of the plant.

F-box protein FBXL2 targets cyclin D2 for ubiquitination and degradation to inhibit leukemic cell proliferation

PubMed Central

Chen, Bill B.; Glasser, Jennifer R.; Coon, Tiffany A.; Zou, Chunbin; Miller, Hannah L.; Fenton, Moon; McDyer, John F.; Boyiadzis, Michael

2012-01-01

Hematologic maligancies exhibit a growth advantage by up-regulation of components within the molecular apparatus involved in cell-cycle progression. The SCF (Skip-Cullin1-F-box protein) E3 ligase family provides homeostatic feedback control of cell division by mediating ubiquitination and degradation of cell-cycle proteins. By screening several previously undescribed E3 ligase components, we describe the behavior of a relatively new SCF subunit, termed FBXL2, that ubiquitinates and destabilizes cyclin D2 protein leading to G0 phase arrest and apoptosis in leukemic and B-lymphoblastoid cell lines. FBXL2 expression was strongly suppressed, and yet cyclin D2 protein levels were robustly expressed in acute myelogenous leukemia (AML) and acute lymphoblastic leukemia (ALL) patient samples. Depletion of endogenous FBXL2 stabilized cyclin D2 levels, whereas ectopically expressed FBXL2 decreased cyclin D2 lifespan. FBXL2 did not bind a phosphodegron within its substrate, which is typical of other F-box proteins, but uniquely targeted a calmodulin-binding signature within cyclin D2 to facilitate its polyubiquitination. Calmodulin competes with the F-box protein for access to this motif where it bound and protected cyclin D2 from FBXL2. Calmodulin reversed FBXL2-induced G0 phase arrest and attenuated FBXL2-induced apoptosis of lymphoblastoid cells. These results suggest an antiproliferative effect of SCFFBXL2 in lymphoproliferative malignancies. PMID:22323446

Novel functions of prototype foamy virus Gag glycine- arginine-rich boxes in reverse transcription and particle morphogenesis.

PubMed

Müllers, Erik; Uhlig, Tobias; Stirnnagel, Kristin; Fiebig, Uwe; Zentgraf, Hanswalter; Lindemann, Dirk

2011-02-01

Prototype foamy virus (PFV) Gag lacks the characteristic orthoretroviral Cys-His motifs that are essential for various steps of the orthoretroviral replication cycle, such as RNA packaging, reverse transcription, infectivity, integration, and viral assembly. Instead, it contains three glycine-arginine-rich boxes (GR boxes) in its C terminus that putatively represent a functional equivalent. We used a four-plasmid replication-deficient PFV vector system, with uncoupled RNA genome packaging and structural protein translation, to analyze the effects of deletion and various substitution mutations within each GR box on particle release, particle-associated protein composition, RNA packaging, DNA content, infectivity, particle morphology, and intracellular localization. The degree of viral particle release by all mutants was similar to that of the wild type. Only minimal effects on Pol encapsidation, exogenous reverse transcriptase (RT) activity, and genomic viral RNA packaging were observed. In contrast, particle-associated DNA content and infectivity were drastically reduced for all deletion mutants and were undetectable for all alanine substitution mutants. Furthermore, GR box I mutants had significant changes in particle morphology, and GR box II mutants lacked the typical nuclear localization pattern of PFV Gag. Finally, it could be shown that GR boxes I and III, but not GR box II, can functionally complement each other. It therefore appears that, similar to the orthoretroviral Cys-His motifs, the PFV Gag GR boxes are important for RNA encapsidation, genome reverse transcription, and virion infectivity as well as for particle morphogenesis.

Pore water pressure variations in Subpermafrost groundwater : Numerical modeling compared with experimental modeling

NASA Astrophysics Data System (ADS)

Rivière, Agnès.; Goncalves, Julio; Jost, Anne; Font, Marianne

2010-05-01

Development and degradation of permafrost directly affect numerous hydrogeological processes such as thermal regime, exchange between river and groundwater, groundwater flows patterns and groundwater recharge (Michel, 1994). Groundwater in permafrost area is subdivided into two zones: suprapermafrost and subpermafrost which are separated by permafrost. As a result of the volumetric expansion of water upon freezing and assuming ice lenses and frost heave do not form freezing in a saturated aquifer, the progressive formation of permafrost leads to the pressurization of the subpermafrost groundwater (Wang, 2006). Therefore disappearance or aggradation of permafrost modifies the confined or unconfined state of subpermafrost groundwater. Our study focuses on modifications of pore water pressure of subpermafrost groundwater which could appear during thawing and freezing of soil. Numerical simulation allows elucidation of some of these processes. Our numerical model accounts for phase changes for coupled heat transport and variably saturated flow involving cycles of freezing and thawing. The flow model is a combination of a one-dimensional channel flow model which uses Manning-Strickler equation and a two-dimensional vertically groundwater flow model using Richards equation. Numerical simulation of heat transport consisted in a two dimensional model accounting for the effects of latent heat of phase change of water associated with melting/freezing cycles which incorporated the advection-diffusion equation describing heat-transfer in porous media. The change of hydraulic conductivity and thermal conductivity are considered by our numerical model. The model was evaluated by comparing predictions with data from laboratory freezing experiments. Experimental design was undertaken at the Laboratory M2C (Univesité de Caen-Basse Normandie, CNRS, France). The device consisted of a Plexiglas box insulated on all sides except on the top. Precipitation and ambient temperature are imposed. The Plexiglas box is filled with glass beads of which hydraulics and thermal parameters are known. All parameters required for our numerical model are controlled and continuous monitoring of soil temperatures and pore water pressure are reported. Our results of experimental model allow us to test the relevance of processes described by our numerical simulation and to quantify the impact of permafrost on pore water pressure of subpermafrost groundwater during a cycle of freezing and thawing. Michel, Frederick A. and Van Everdingen, Robert O. 1994. Changes in hydrogeologic regimes in permafrost regions due to climatic change. Permafrost and Periglacial Processes, 5: 191-195. Wang, Chi-yuen and Manga, Michael and Hanna, Jeffrey C. 2006. Can freezing cause floods on Mars? Geophysical Research Letters, 33

Does box model training improve surgical dexterity and economy of movement during virtual reality laparoscopy? A randomised trial.

PubMed

Clevin, Lotte; Grantcharov, Teodor P

2008-01-01

Laparoscopic box model trainers have been used in training curricula for a long time, however data on their impact on skills acquisition is still limited. Our aim was to validate a low cost box model trainer as a tool for the training of skills relevant to laparoscopic surgery. Randomised, controlled trial (Canadian Task Force Classification I). University Hospital. Sixteen gynaecologic residents with limited laparoscopic experience were randomised to a group that received a structured box model training curriculum, and a control group. Performance before and after the training was assessed in a virtual reality laparoscopic trainer (LapSim and was based on objective parameters, registered by the computer system (time, error, and economy of motion scores). Group A showed significantly greater improvement in all performance parameters compared with the control group: economy of movement (p=0.001), time (p=0.001) and tissue damage (p=0.036), confirming the positive impact of box-trainer curriculum on laparoscopic skills acquisition. Structured laparoscopic skill training on a low cost box model trainer improves performance as assessed using the VR system. Trainees who used the box model trainer showed significant improvement compared to the control group. Box model trainers are valid tools for laparoscopic skills training and should be implemented in the comprehensive training curricula in gynaecology.

A Calculus for Boxes and Traits in a Java-Like Setting

NASA Astrophysics Data System (ADS)

Bettini, Lorenzo; Damiani, Ferruccio; de Luca, Marco; Geilmann, Kathrin; Schäfer, Jan

The box model is a component model for the object-oriented paradigm, that defines components (the boxes) with clear encapsulation boundaries. Having well-defined boundaries is crucial in component-based software development, because it enables to argue about the interference and interaction between a component and its context. In general, boxes contain several objects and inner boxes, of which some are local to the box and cannot be accessed from other boxes and some can be accessible by other boxes. A trait is a set of methods divorced from any class hierarchy. Traits can be composed together to form classes or other traits. We present a calculus for boxes and traits. Traits are units of fine-grained reuse, whereas boxes can be seen as units of coarse-grained reuse. The calculus is equipped with an ownership type system and allows us to combine coarse- and fine-grained reuse of code by maintaining encapsulation of components.

MISTRA mechanism development: A new mechanism focused on marine environments

NASA Astrophysics Data System (ADS)

Bräuer, Peter; Sommariva, Roberto; von Glasow, Roland

2015-04-01

The tropospheric multiphase chemistry of halogen compounds plays a key role in marine environments. Moreover, halogen compounds have an impact on the tropospheric oxidation capacity and climate. With more than two thirds of the Earth's surface covered with oceans, effects are of global importance. Various conditions are found in marine environments ranging from pristine regions to polluted regimes in the continental outflow. Furthermore, there are important sources for halogen compounds over land, such as volcanoes, salt lakes, or emissions from industrial processes. To assess the impact of halogen chemistry with numerical models under these distinct conditions, a multiphase mechanism has been developed in the last decades and applied successfully in numerous box and 1D model studies. Contributions from these model studies helped to identify important chemical cycles affecting the composition and chemistry of the troposphere. However, several discrepancies between model results and field measurements remain. Therefore, a major revision of the chemical mechanism has been performed including an update of the kinetic data and the addition of new reaction cycles. The extended mechansims have been evaluated in several model studies with the 1D model MISTRA. Current work focuses at the identification of the most important reaction cycles, which led to significant changes in the concentration-time profiles of several halogen species. Subsequently, the mechanism will be reduced to the most imporatant reactions, which are currently investigated. As regional and global model studies become more important to identify the importance of tropospheric halogen multiphase chemistry, the goal is to derive parameterisations for the most important halogen chemistry cycles, which can than be implemented in regional and global 3D models. In the reduction process, the extented MISTRA version will serve as a benchmark to assess the quality and accuracy of the reduced mechansim versions.

Phase shifts in the stoichiometry of rifamycin B fermentation and correlation with the trends in the parameters measured online.

PubMed

Bapat, Prashant M; Das, Debasish; Dave, Nishant N; Wangikar, Pramod P

2006-12-15

Antibiotic fermentation processes are raw material cost intensive and the profitability is greatly dependent on the product yield per unit substrate consumed. In order to reduce costs, industrial processes use organic nitrogen substrates (ONS) such as corn steep liquor and yeast extract. Thus, although the stoichiometric analysis is the first logical step in process development, it is often difficult to achieve due to the ill-defined nature of the medium. Here, we present a black-box stoichiometric model for rifamycin B production via Amycolatopsis mediterranei S699 fermentation in complex multi-substrate medium. The stoichiometric coefficients have been experimentally evaluated for nine different media compositions. The ONS was quantified in terms of the amino acid content that it provides. Note that the black box stoichiometric model is an overall result of the metabolic reactions that occur during growth. Hence, the observed stoichiometric coefficients are liable to change during the batch cycle. To capture the shifts in stoichiometry, we carried out the stoichiometric analysis over short intervals of 8-16 h in a batch cycle of 100-200 h. An error analysis shows that there are no systematic errors in the measurements and that there are no unaccounted products in the process. The growth stoichiometry shows a shift from one substrate combination to another during the batch cycle. The shifts were observed to correlate well with the shifts in the trends of pH and exit carbon dioxide profiles. To exemplify, the ammonia uptake and nitrate uptake phases were marked by a decreasing pH trend and an increasing pH trend, respectively. Further, we find the product yield per unit carbon substrate to be greatly dependent on the nature of the nitrogen substrate. The analysis presented here can be readily applied to other fermentation systems that employ multi-substrate complex media.

Verification of land-atmosphere coupling in forecast models, reanalyses and land surface models using flux site observations.

PubMed

Dirmeyer, Paul A; Chen, Liang; Wu, Jiexia; Shin, Chul-Su; Huang, Bohua; Cash, Benjamin A; Bosilovich, Michael G; Mahanama, Sarith; Koster, Randal D; Santanello, Joseph A; Ek, Michael B; Balsamo, Gianpaolo; Dutra, Emanuel; Lawrence, D M

2018-02-01

We confront four model systems in three configurations (LSM, LSM+GCM, and reanalysis) with global flux tower observations to validate states, surface fluxes, and coupling indices between land and atmosphere. Models clearly under-represent the feedback of surface fluxes on boundary layer properties (the atmospheric leg of land-atmosphere coupling), and may over-represent the connection between soil moisture and surface fluxes (the terrestrial leg). Models generally under-represent spatial and temporal variability relative to observations, which is at least partially an artifact of the differences in spatial scale between model grid boxes and flux tower footprints. All models bias high in near-surface humidity and downward shortwave radiation, struggle to represent precipitation accurately, and show serious problems in reproducing surface albedos. These errors create challenges for models to partition surface energy properly and errors are traceable through the surface energy and water cycles. The spatial distribution of the amplitude and phase of annual cycles (first harmonic) are generally well reproduced, but the biases in means tend to reflect in these amplitudes. Interannual variability is also a challenge for models to reproduce. Our analysis illuminates targets for coupled land-atmosphere model development, as well as the value of long-term globally-distributed observational monitoring.

Alteration of Box-Jenkins methodology by implementing genetic algorithm method

NASA Astrophysics Data System (ADS)

Ismail, Zuhaimy; Maarof, Mohd Zulariffin Md; Fadzli, Mohammad

2015-02-01

A time series is a set of values sequentially observed through time. The Box-Jenkins methodology is a systematic method of identifying, fitting, checking and using integrated autoregressive moving average time series model for forecasting. Box-Jenkins method is an appropriate for a medium to a long length (at least 50) time series data observation. When modeling a medium to a long length (at least 50), the difficulty arose in choosing the accurate order of model identification level and to discover the right parameter estimation. This presents the development of Genetic Algorithm heuristic method in solving the identification and estimation models problems in Box-Jenkins. Data on International Tourist arrivals to Malaysia were used to illustrate the effectiveness of this proposed method. The forecast results that generated from this proposed model outperformed single traditional Box-Jenkins model.

Penetration and survival of riparian tree roots in compacted coarse gravel mixtures

NASA Astrophysics Data System (ADS)

Muellner, Michael; Weissteiner, Clemens; Konzel, Christoph; Rauch, Hans Peter

2016-04-01

Root growth and penetration of riparian trees along paved cycling paths and service roads of rivers causes often traffic safety problems. Damages occur mostly on street surfaces with thin asphalt layers and especially in the upper part of the pavement structure. The maintainers of these roads are faced with frequent and high annual repair costs in order to guarantee traffic safety and pleasant cycling conditions. Analyses of the dominating process mechanisms demonstrated that mainly the naturally growing pioneer vegetation along rivers is responsible for the asphalt damages caused by their constant and rapid growth. The investigations of the root growth characteristics showed that tree roots mostly penetrate the road structure between the gravel sublayer and the asphalt because of the high compaction of the layer itself. In a second step of the research project the influence of different gravel size mixtures on the root penetration and survival are analysed. Coarse gravel size mixtures with the lowest possible fine granular fraction are suposed to inhibit root growth due to the mechanical impedance and air pruning of roots. Furthermore coarse gravel size mixtures could influence the presence of condensate formed at the underside of the asphalt layer. Therefore seven different compositions of matrix stone gravel size mixtures (0/32, 4/32, 8/32, 16/32, 0/64, 8/64 hydraulic bound mixture and 16/64) as sublayer material were tested in a small scale experimental set-up. Wooden boxes with a dimension of 1x1.5x0.5 m and 0.5x0.5x0.5 m were used as frames for the different matrix stone mixtures. On one side the boxes were delimited to the surrounding soil with a steel mesh followed by a wire mesh and a geotextile. Boxes were located in an 80 cm deep hole on a 30 cm thick drainage layer. Willow and poplar cuttings were planted laterally to the root penetrable side of the boxes. Large boxes were filled and compacted with 6 different gravel size mixtures (all but 4/32) and covered by a 10 cm thick concrete layer, small boxes were filled and compacted with 6 gravel size mixtures (all but hydraulic bound mixture) up to the top of the boxes. In total 18 large boxes and 36 small boxes were constructed. Six month after planting the cuttings, above- and below-ground biomass was analysed for the first 6 large boxes and the first 12 small boxes. Soil moisture conditions were also analysed by 21 soil-moisture sensors (3 in each large box and 3 in the surrounding soil) in order to detect different soil moisture conditions throughout time. First results showed that after six months a slightly increase of root biomass production was detected in the finer gravel size mixtures.

What water isotopes tell us about water cycle responses to climate change

NASA Astrophysics Data System (ADS)

Raudzens Bailey, A.; Singh, H. A.; Nusbaumer, J. M.; Dee, S.; Blossey, P. N.; Posmentier, E. S.

2017-12-01

The water cycle is expected to respond strongly to rising global temperatures. Models predict regional imbalances in evaporation and precipitation will intensify, resulting in a slowing of the large-scale circulation. This slowing will extend the moisture length scale by increasing the amount of time water resides in the atmosphere. However, verifying these changes observationally is challenging. Isotope ratios in water vapor and precipitation represent an integrated record of moisture's journey from evaporative source to precipitation sink. Consequently, they provide a unique opportunity to identify changes in moisture length scale associated with shifts in regional hydrologic balance. Leveraging satellite retrievals, box models, climate simulations, and in situ data, this presentation demonstrates how water isotope ratios can be used to estimate water cycle changes over the historical period and into the future. These changes are closely linked to variations in the divergence of atmospheric moisture fluxes, which result from variations in specific humidity, wind direction, and wind speed. This presentation highlights the extent to which isotopic measurements allow us to track changes in the dynamic, or wind-driven, component of moisture transport and to investigate whether remote moisture contributions are becoming increasingly important in augmenting local precipitation.

Genetically engineered mouse models for functional studies of SKP1-CUL1-F-box-protein (SCF) E3 ubiquitin ligases.

PubMed

Zhou, Weihua; Wei, Wenyi; Sun, Yi

2013-05-01

The SCF (SKP1 (S-phase-kinase-associated protein 1), Cullin-1, F-box protein) E3 ubiquitin ligases, the founding member of Cullin-RING ligases (CRLs), are the largest family of E3 ubiquitin ligases in mammals. Each individual SCF E3 ligase consists of one adaptor protein SKP1, one scaffold protein cullin-1 (the first family member of the eight cullins), one F-box protein out of 69 family members, and one out of two RING (Really Interesting New Gene) family proteins RBX1/ROC1 or RBX2/ROC2/SAG/RNF7. Various combinations of these four components construct a large number of SCF E3s that promote the degradation of many key regulatory proteins in cell-context, temporally, and spatially dependent manners, thus controlling precisely numerous important cellular processes, including cell cycle progression, apoptosis, gene transcription, signal transduction, DNA replication, maintenance of genome integrity, and tumorigenesis. To understand how the SCF E3 ligases regulate these cellular processes and embryonic development under in vivo physiological conditions, a number of mouse models with transgenic (Tg) expression or targeted deletion of components of SCF have been established and characterized. In this review, we will provide a brief introduction to the ubiquitin-proteasome system (UPS) and the SCF E3 ubiquitin ligases, followed by a comprehensive overview on the existing Tg and knockout (KO) mouse models of the SCF E3s, and discuss the role of each component in mouse embryogenesis, cell proliferation, apoptosis, carcinogenesis, as well as other pathogenic processes associated with human diseases. We will end with a brief discussion on the future directions of this research area and the potential applications of the knowledge gained to more effective therapeutic interventions of human diseases.

Plk2 regulated centriole duplication is dependent on its localization to the centrioles and a functional polo-box domain.

PubMed

Cizmecioglu, Onur; Warnke, Silke; Arnold, Marc; Duensing, Stefan; Hoffmann, Ingrid

2008-11-15

In mammalian cells, the centrosome consists of a pair of centrioles and amorphous pericentriolar material. The centrosome duplicates once per cell cycle. Polo like kinases (Plks) perform crucial functions in cell cycle progression and during mitosis. The polo-like kinase-2, Plk2, is activated near the G(1)/S phase transition, and plays an important role in the reproduction of centrosomes. In this study, we show that the polo-box of Plk2 is required both for association to the centrosome and centriole duplication. Mutation of critical sites in the Plk2 polo-box prevents centrosomal localization and impairs centriole duplication. Plk2 is localized to centrosomes during early G(1) phase where it only associates to the mother centriole and then distributes equally to both mother and daughter centrioles at the onset of S phase. Furthermore, our results imply that Plk2 mediated centriole duplication is dependent on Plk4 function. In addition, we find that siRNA-mediated downregulation of Plk2 leads to the formation of abnormal mitotic spindles confirming that Plk2 may have a function in the reproduction of centrioles.

Pressure-flow relationships in in vitro model of compartment syndrome.

PubMed

Shrier, I; Magder, S

1995-07-01

Compartment syndrome is a condition in which an increase in intramuscular pressure decreases blood flow to skeletal muscle. According to the Starling resistor (i.e., vascular waterfall) model of blood flow, the decrease in flow could occur through an increase in arterial resistance (Rart) or an increase in the critical closing pressure (Pcrit). To determine which explains the decrease in flow, we pump perfused a canine gastrocnemius muscle placed within an airtight box, controlled box pressures (Pbox) so that flow ranged from 100 to 50%, and measured Pcrit, Rart, arterial compliance, small venular pressure (measured by the double-occlusion technique), and venous pressure. An increase in Pbox limited flow mainly through an increase in Pcrit (75-85%), with only small changes in Rart (15-25%) and no change in arterial compliance. Increases in Pbox also produced a vascular waterfall in the venous circulation, but small venular transmural pressure always remained less than control levels. We conclude that increases in Pbox mostly limit blood flow through increases in Pcrit and that Rart plays a minor role. Transmural pressure across the small venules decreases with increases in intramuscular pressure, which contradicts the currently held belief that compartment syndrome is due to a cycle of swelling-ischemia-swelling.

Does Terrestrial Carbon Explain Lake Superior Model-Data pCO2 Discrepancy?

NASA Astrophysics Data System (ADS)

Bennington, V.; McKinley, G. A.; Atilla, N.; Kimura, N.; Urban, N.; Wu, C.; Desai, A.

2008-12-01

As part of the CyCLeS project, a three-dimensional hydrodynamic model (MITgcm) was coupled to a medium- complexity ecosystem model and applied to Lake Superior in order to constrain the seasonal cycle of lake pCO2 and air-lake fluxes of CO2. Previous estimates of CO2 emissions from the lake, while very large, were based on field measurements of very limited spatial and temporal extent. The model allows a more realistic extrapolation from the limited data by incorporation of lake-wide circulation and food web dynamics. A large discrepancy (200 uatm) between observations and model-predicted pCO2 during spring suggests a significant input of terrestrial carbon into the lake. The physical model has 10-km horizontal resolution with 29 vertical layers, ten of which are in the top 50 m of the water column. The model is forced by interpolated meteorological data obtained from land-based weather stations, buoys, and other measurements. Modeled surface temperatures compare well to satellite- based surface water temperature images derived from NOAA AVHRR (Advanced Very High Resolution Radiometer), though there are regional patterns of bias that suggest errors in the heat flux forcing. Growth of two classes of phytoplankton is modeled as a function of temperature, light, and nutrients. One grazer preys upon all phytoplankton. The cycles of carbon and phosphorous are explicitly modeled throughout the water column. The model is able to replicate the observed seasonal cycle of lake chlorophyll and the deep chlorophyll maximum. The model is unable to capture the magnitude of observed CO2 super-saturation during spring without considering external carbon inputs to the lake. Simple box model results suggest that the estimated pool of terrestrial carbon in the lake (17 TgC) must remineralize with a timescale of months during spring in order to account for the model/data pCO2 difference. River inputs and enhanced remineralization in spring due to photo-oxidation are other mechanisms considered to explain the discrepancy between model predictions and observations of pCO2. Model results suggest that year-round and lake-wide direct measurements of pCO2 would help to better constrain the lake carbon cycle.

Conventional box model training improves laparoscopic skills during salpingectomy on LapSim: a randomized trial.

PubMed

Akdemir, Ali; Ergenoğlu, Ahmet Mete; Yeniel, Ahmet Özgür; Sendağ, Fatih

2013-01-01

Box model trainers have been used for many years to facilitate the improvement of laparoscopic skills. However, there are limited data available on box trainers and their impact on skill acquisition, assessed by virtual reality systems. Twenty-two Postgraduate Year 1 gynecology residents with no laparoscopic experience were randomly divided into one group that received structured box model training and a control group. All residents performed a salpingectomy on LapSim before and after the training. Performances before and after the training were assessed using LapSim and were recorded using objective parameters, registered by a computer system (time, damage, and economy of motion scores). There were initially no differences between the two groups. The box trainer group showed significantly greater improvement in time (p=0.01) and economy of motion scores (p=0.001) compared with the control group post-training. The present study confirmed the positive effect of low cost box model training on laparoscopic skill acquisition as assessed using LapSim. Novice surgeons should obtain practice on box trainers and teaching centers should make efforts to establish training laboratories.

Impacts of global warming on boreal larch forest in East Siberia: simulations with a coupled carbon cycle and fire regime model

NASA Astrophysics Data System (ADS)

Ito, A.

2005-12-01

Boreal forest is one of the focal areas in the study of global warming and carbon cycle. In this study, a coupled carbon cycle and fire regime model was developed and applied to a larch forest in East Siberia, near Yakutsk. Fire regime is simulated with a cellular automaton (20 km x 20 km), in which fire ignition, propagation, and extinction are parameterized in a stochastic manner, including the effects of fuel accumulation and weather condition. For each grid, carbon cycle is simulated with a 10-box scheme, in which net biome production by photosynthesis, respiration, decomposition, and biomass burning are calculated explicitly. Model parameters were calibrated with field data of biomass, litter stock, and fire statistics; the carbon cycle scheme was examined with flux measurement data. As a result, the model successfully captured average carbon stocks, productivity, fire frequency, and biomass burning. To assess the effects of global warming, a series of simulations were performed using climatic projections based on the IPCC-SRES emission scenarios from 1990 to 2100. The range of uncertainty among the different climate models and emission scenarios was assessed by using multi-model projection data by CCCma, CCSR/NIES, GFDL, and HCCPR corresponding to the SRES A2 and B2 scenarios. The model simulations showed that global warming in the 21st century would considerably enhance the fire regime (e.g., cumulative burnt area increased by 80 to 120 percent), leading to larger carbon emission by biomass burning. The effect was so strong that growth enhancement by elevated atmospheric CO2 concentration and elongated growing period was cancelled out at landscape scale. In many cases, the larch forest was estimated to act as net carbon sources of 2 to 5 kg C m_|2 by the end of the 21st century, underscoring the importance of forest fire monitoring and management in this region.

Early Operations Flight Correlation of the Lunar Laser Communications Demonstration (LLCD) on the Lunar Atmosphere and Dust Environment Explorer (LADEE)

NASA Technical Reports Server (NTRS)

Peabody, Hume; Yang, Kan; Nguyen, Daniel; Cornwell, Donald

2015-01-01

The Lunar Atmosphere and Dust Environment Explorer (LADEE) mission launched on September 7, 2013 with a one month cruise before lunar insertion. The LADEE spacecraft is a power limited, octagonal, composite bus structure with solar panels on all eight sides with four vertical segments per side and 2 panels dedicated to instruments. One of these panels has the Lunar Laser Communications Demonstration (LLCD), which represents a furthering of the laser communications technology demonstration proved out by the Lunar Reconnaissance Orbiter (LRO). LLCD increases the bandwidth of communication to and from the moon with less mass and power than LROs technology demonstrator. The LLCD Modem and Controller boxes are mounted to an internal cruciform composite panel and have no dedicated radiator. The thermal design relies on power cycling of the boxes and radiation of waste heat to the inside of the panels, which then reject the heat when facing cold space. The LADEE mission includes a slow roll and numerous attitudes to accommodate the challenging thermal requirements for all the instruments on board. During the cruise phase, the internal Modem and Controller avionics for LLCD were warmer than predicted by more than modeling uncertainty would suggest. This caused concern that if the boxes were considerably warmer than expected while off, they would also be warmer when operating and could limit the operational time when in lunar orbit. The thermal group at Goddard Space Flight Center evaluated the models and design for these critical avionics for LLCD. Upon receipt of the spacecraft models and audit was performed and data was collected from the flight telemetry to perform a sanity check of the models and to correlate to flight where possible. This paper describes the efforts to correlate the model to flight data and to predict the thermal performance when in lunar orbit and presents some lessons learned.

Modeling of yield and environmental impact categories in tea processing units based on artificial neural networks.

PubMed

Khanali, Majid; Mobli, Hossein; Hosseinzadeh-Bandbafha, Homa

2017-12-01

In this study, an artificial neural network (ANN) model was developed for predicting the yield and life cycle environmental impacts based on energy inputs required in processing of black tea, green tea, and oolong tea in Guilan province of Iran. A life cycle assessment (LCA) approach was used to investigate the environmental impact categories of processed tea based on the cradle to gate approach, i.e., from production of input materials using raw materials to the gate of tea processing units, i.e., packaged tea. Thus, all the tea processing operations such as withering, rolling, fermentation, drying, and packaging were considered in the analysis. The initial data were obtained from tea processing units while the required data about the background system was extracted from the EcoInvent 2.2 database. LCA results indicated that diesel fuel and corrugated paper box used in drying and packaging operations, respectively, were the main hotspots. Black tea processing unit caused the highest pollution among the three processing units. Three feed-forward back-propagation ANN models based on Levenberg-Marquardt training algorithm with two hidden layers accompanied by sigmoid activation functions and a linear transfer function in output layer, were applied for three types of processed tea. The neural networks were developed based on energy equivalents of eight different input parameters (energy equivalents of fresh tea leaves, human labor, diesel fuel, electricity, adhesive, carton, corrugated paper box, and transportation) and 11 output parameters (yield, global warming, abiotic depletion, acidification, eutrophication, ozone layer depletion, human toxicity, freshwater aquatic ecotoxicity, marine aquatic ecotoxicity, terrestrial ecotoxicity, and photochemical oxidation). The results showed that the developed ANN models with R 2 values in the range of 0.878 to 0.990 had excellent performance in predicting all the output variables based on inputs. Energy consumption for processing of green tea, oolong tea, and black tea were calculated as 58,182, 60,947, and 66,301 MJ per ton of dry tea, respectively.

SimpleBox 4.0: Improving the model while keeping it simple….

PubMed

Hollander, Anne; Schoorl, Marian; van de Meent, Dik

2016-04-01

Chemical behavior in the environment is often modeled with multimedia fate models. SimpleBox is one often-used multimedia fate model, firstly developed in 1986. Since then, two updated versions were published. Based on recent scientific developments and experience with SimpleBox 3.0, a new version of SimpleBox was developed and is made public here: SimpleBox 4.0. In this new model, eight major changes were implemented: removal of the local scale and vegetation compartments, addition of lake compartments and deep ocean compartments (including the thermohaline circulation), implementation of intermittent rain instead of drizzle and of depth dependent soil concentrations, adjustment of the partitioning behavior for organic acids and bases as well as of the value for enthalpy of vaporization. In this paper, the effects of the model changes in SimpleBox 4.0 on the predicted steady-state concentrations of chemical substances were explored for different substance groups (neutral organic substances, acids, bases, metals) in a standard emission scenario. In general, the largest differences between the predicted concentrations in the new and the old model are caused by the implementation of layered ocean compartments. Undesirable high model complexity caused by vegetation compartments and a local scale were removed to enlarge the simplicity and user friendliness of the model. Copyright © 2016 Elsevier Ltd. All rights reserved.

Comparison of postbuckling model and finite element model with compression strength of corrugated boxes

Treesearch

Thomas J. Urbanik; Edmond P. Saliklis

2002-01-01

Conventional compression strength formulas for corrugated fiberboard boxes are limited to geometry and material that produce an elastic postbuckling failure. Inelastic postbuckling can occur in squatty boxes and trays, but a mechanistic rationale for unifying observed strength data is lacking. This study employs a finite element model, instead of actual experiments, to...

Thermo-mechanical cyclic testing of carbon-carbon primary structure for an SSTO vehicle

NASA Astrophysics Data System (ADS)

Croop, Harold C.; Leger, Kenneth B.; Lowndes, Holland B.; Hahn, Steven E.; Barthel, Chris A.

1999-01-01

An advanced carbon-carbon structural component is being experimentally evaluated for use as primary load carrying structure for future single-stage-to-orbit (SSTO) vehicles. The component is a wing torque box section featuring an advanced, three-spar design. This design features 3D-woven, angle-interlock skins, 3D integrally woven spar webs and caps, oxidation inhibited matrix, chemical vapor deposited (CVD) oxidation protection coating, and ceramic matrix composite fasteners. The box spar caps are nested into the skins which, when processed together through the carbon-carbon processing cycle, resulted in monolithic box halves. The box half sections were then joined at the spar web intersections using ceramic matrix composite fasteners. This method of fabrication eliminated fasteners through both the upper and lower skins. Development of the carbon-carbon wing box structure was accomplished in a four phase design and fabrication effort, conducted by Boeing, Information, Space and Defense Systems, Seattle, WA, under contract to the Air Force Research Laboratory (AFRL). The box is now set up for testing and will soon begin cyclic loads testing in the AFRL Structural Test Facility at Wright-Patterson Air Force Base (WPAFB), OH. This paper discusses the latest test setup accomplishments and the results of the pre-cyclic loads testing performed to date.

Trial-Run of a Junction-Box Attachment Test for Use in Photovoltaic Module Qualification: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, D. C.; Deibert, S. L.; Wohlgemuth, J. H.

Engineering robust adhesion of the junction box (j-box) is a hurdle typically encountered by photovoltaic module manufacturers during product development and manufacturing process control. There are historical incidences of adverse effects (e.g., fires) caused when the j-box/adhesive/module system has failed in the field. The addition of a weight to the j-box during the 'damp-heat,' 'thermal-cycle,' or 'creep' tests within the IEC qualification protocol is proposed to verify the basic robustness of the adhesion system. The details of the proposed test are described, in addition to a trial-run of the test procedure. The described experiments examine four moisture-cured silicones, four foammore » tapes, and a hot-melt adhesive used in conjunction with glass, KPE, THV, and TPE substrates. For the purpose of validating the experiment, j-boxes were adhered to a substrate, loaded with a prescribed weight, and then subjected to aging. The replicate mock-modules were aged in an environmental chamber (at 85 degrees C/85% relative humidity for 1000 hours; then 100 degrees C/<10% relative humidity for 200 hours) or fielded in Golden (CO), Miami (FL), and Phoenix (AZ) for one year. Attachment strength tests, including pluck and shear test geometries, were also performed on smaller component specimens.« less

Trial Run of a Junction-Box Attachment Test for Use in Photovoltaic Module Qualification (Presentation)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, D.; Deibert, S.; Wohlgemuth, J.

Engineering robust adhesion of the junction-box (j-box) is a hurdle typically encountered by photovoltaic (PV) module manufacturers during product development and manufacturing process control. There are historical incidences of adverse effects (e.g., fires), caused when the j-box/adhesive/module system has failed in the field. The addition of a weight to the j-box during the 'damp-heat', 'thermal-cycle', or 'creep' tests within the IEC qualification protocol is proposed to verify the basic robustness of the adhesion system. The details of the proposed test are described, in addition to a trial run of the test procedure. The described experiments examine 4 moisture-cured silicones, 4more » foam tapes, and a hot-melt adhesive used in conjunction with glass, KPE, THV, and TPE substrates. For the purpose of validating the experiment, j-boxes were adhered to a substrate, loaded with a prescribed weight, and then subjected to aging. The replicate mock-modules were aged in an environmental chamber (at 85 deg C/85% relative humidity for 1000 hours; then 100 degrees C/<10% relative humidity for 200 hours) or fielded in Golden, Miami, and Phoenix for 1 year. Attachment strength tests, including pluck and shear test geometries, were also performed on smaller component specimens.« less

Evaluation of numerical models by FerryBox and Fixed Platform in-situ data in the southern North Sea

NASA Astrophysics Data System (ADS)

Haller, M.; Janssen, F.; Siddorn, J.; Petersen, W.; Dick, S.

2015-02-01

FerryBoxes installed on ships of opportunity (SoO) provide high-frequency surface biogeochemical measurements along selected tracks on a regular basis. Within the European FerryBox Community, several FerryBoxes are operated by different institutions. Here we present a comparison of model simulations applied to the North Sea with FerryBox temperature and salinity data from a transect along the southern North Sea and a more detailed analysis at three different positions located off the English East coast, at the Oyster Ground and in the German Bight. In addition to the FerryBox data, data from a Fixed Platform of the MARNET network are applied. Two operational hydrodynamic models have been evaluated for different time periods: results of BSHcmod v4 are analysed for 2009-2012, while simulations of FOAM AMM7 NEMO have been available from MyOcean data base for 2011 and 2012. The simulation of water temperatures is satisfying; however, limitations of the models exist, especially near the coast in the southern North Sea, where both models are underestimating salinity. Statistical errors differ between the models and the measured parameters, as the root mean square error (rmse) accounts for BSHcmod v4 to 0.92 K, for AMM7 only to 0.44 K. For salinity, BSHcmod is slightly better than AMM7 (0.98 and 1.1 psu, respectively). The study results reveal weaknesses of both models, in terms of variability, absolute levels and limited spatial resolution. In coastal areas, where the simulation of the transition zone between the coasts and the open ocean is still a demanding task for operational modelling, FerryBox data, combined with other observations with differing temporal and spatial scales serve as an invaluable tool for model evaluation and optimization. The optimization of hydrodynamical models with high frequency regional datasets, like the FerryBox data, is beneficial for their subsequent integration in ecosystem modelling.

On the linkages between the global carbon-nitrogen-phosphorus cycles

NASA Astrophysics Data System (ADS)

Tanaka, Katsumasa; Mackenzie, Fred; Bouchez, Julien; Knutti, Reto

2013-04-01

State-of-the-art earth system models used for long-term climate projections are becoming ever more complex in terms of not only spatial resolution but also the number of processes. Biogeochemical processes are beginning to be incorporated into these models. The motivation of this study is to quantify how climate projections are influenced by biogeochemical feedbacks. In the climate modeling community, it is virtually accepted that climate-Carbon (C) cycle feedbacks accelerate the future warming (Cox et al. 2000; Friedlingstein et al. 2006). It has been demonstrated that the Nitrogen (N) cycle suppresses climate-C cycle feedbacks (Thornton et al. 2009). On the contrary, biogeochemical studies show that the coupled C-N-Phosphorus (P) cycles are intimately interlinked via biosphere and the N-P cycles amplify C cycle feedbacks (Ver et al. 1999). The question as to whether the N-P cycles enhance or attenuate C cycle feedbacks is debated and has a significant implication for projections of future climate. We delve into this problem by using the Terrestrial-Ocean-aTmosphere Ecosystem Model 3 (TOTEM3), a globally-aggregated C-N-P cycle box model. TOTEM3 is a process-based model that describes the biogeochemical reactions and physical transports involving these elements in the four domains of the Earth system: land, atmosphere, coastal ocean, and open ocean. TOTEM3 is a successor of earlier TOTEM models (Ver et al. 1999; Mackenzie et al. 2011). In our presentation, we provide an overview of fundamental features and behaviors of TOTEM3 such as the mass balance at the steady state and the relaxation time scales to various types of perturbation. We also show preliminary results to investigate how the N-P cycles influence the behavior of the C cycle. References Cox PM, Betts RA, Jones CD, Spall SA, Totterdell IJ (2000) Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model. Nature, 408, 184-187. Friedlingstein P, Cox P, Betts R, Bopp L, von Bloh W, Brovkin V, Cadule P, Doney S, Eby M, Fung I, Bala G, John J, Jones C, Joos F, Kato T, Kawamiya M, Knorr W, Lindsay K, Matthews HD, Raddatz T, Rayner P, Reick C, Roeckner E, Schnitzler KG, Schnur R, Strassmann K, Weaver AJ, Yoshikawa C, Zeng N (2006) Climate-Carbon Cycle Feedback Analysis: Results from the C4MIP Model Intercomparison. Journal of Climate, 19, 3337-3353. Mackenzie FT, De Carlo EH, Lerman A (2011) Coupled C, N, P, and O biogeochemical cycling at the land-ocean interface. In: Wolanski E, McLusky DS (eds) Treatise on Estuarine and Coastal Science, vol 5. Academic Press, Waltham, pp 317-342. Thornton PE, Doney SC, Lindsay K, Moore JK, Mahowald N, Randerson JT, Fung I, Lamarque JF, Feddema JJ, Lee YH (2009) Carbon-nitrogen interactions regulate climate-carbon cycle feedbacks: results from an atmosphere-ocean general circulation model. Biogeosciences, 6, 2099-2120. Ver LMB, Mackenzie FT, Lerman A (1999) Biogeochemical responses of the carbon cycle to natural and human perturbations: Past, present, and future. American Journal of Science, 299, 762-801.

Spatial analysis of toxic emissions in LCA: a sub-continental nested USEtox model with freshwater archetypes.

PubMed

Kounina, Anna; Margni, Manuele; Shaked, Shanna; Bulle, Cécile; Jolliet, Olivier

2014-08-01

This paper develops continent-specific factors for the USEtox model and analyses the accuracy of different model architectures, spatial scales and archetypes in evaluating toxic impacts, with a focus on freshwater pathways. Inter-continental variation is analysed by comparing chemical fate and intake fractions between sub-continental zones of two life cycle impact assessment models: (1) the nested USEtox model parameterized with sub-continental zones and (2) the spatially differentiated IMPACTWorld model with 17 interconnected sub-continental regions. Substance residence time in water varies by up to two orders of magnitude among the 17 zones assessed with IMPACTWorld and USEtox, and intake fraction varies by up to three orders of magnitude. Despite this variation, the nested USEtox model succeeds in mimicking the results of the spatially differentiated model, with the exception of very persistent volatile pollutants that can be transported to polar regions. Intra-continental variation is analysed by comparing fate and intake fractions modelled with the a-spatial (one box) IMPACT Europe continental model vs. the spatially differentiated version of the same model. Results show that the one box model might overestimate chemical fate and characterisation factors for freshwater eco-toxicity of persistent pollutants by up to three orders of magnitude for point source emissions. Subdividing Europe into three archetypes, based on freshwater residence time (how long it takes water to reach the sea), improves the prediction of fate and intake fractions for point source emissions, bringing them within a factor five compared to the spatial model. We demonstrated that a sub-continental nested model such as USEtox, with continent-specific parameterization complemented with freshwater archetypes, can thus represent inter- and intra-continental spatial variations, whilst minimizing model complexity. Copyright © 2014 Elsevier Ltd. All rights reserved.

A Simulation of an Energy-Efficient Home.

ERIC Educational Resources Information Center

McLeod, Richard J.; And Others

1981-01-01

A shoe box is converted into a model home to demonstrate the energy efficiency of various insulation measures. Included are instructions for constructing the model home from a shoe box, insulating the shoe box, several activities involving different insulation measures, extensions of the experiment, and post-lab discussion topics. (DS)

A Review of the Ginzburg-Syrovatskii's Galactic Cosmic-Ray Propagation Model and its Leaky-Box Limit

NASA Technical Reports Server (NTRS)

Barghouty, A. F.

2012-01-01

Phenomenological models of galactic cosmic-ray propagation are based on a diffusion equation known as the Ginzburg-Syrovatskii s equation, or variants (or limits) of this equation. Its one-dimensional limit in a homogeneous volume, known as the leaky-box limit or model, is sketched here. The justification, utility, limitations, and a typical numerical implementation of the leaky-box model are examined in some detail.

Identification and characterization of a member of Rab subfamily, Rab8, from Clonorchis sinensis.

PubMed

Liang, Pei; He, Lei; Yu, Jinyun; Xie, Zhizhi; Chen, Xueqing; Mao, Qiang; Liang, Chi; Huang, Yan; Lu, Gang; Yu, Xinbing

2015-05-01

The Rabs act as a binary molecular switch that utilizes the conformational changes associated with the GTP/GDP cycle to elicit responses from target proteins. It regulates a broad spectrum of cellular processes including cell proliferation, cytoskeletal assembly, and intracellular membrane trafficking in eukaryotes. The Rab8 from Clonorchis sinensis (CsRab8) was composed of 199 amino acids. The deduced amino acid sequence shared above 50% identities with other species from trematode, tapeworm, mammal, insecta, nematode, and reptile, respectively. The homologous analysis of sequences showed the conservative domains: G1 box (GDSGVGKS), G2 box (T), G3 box (DTAG), G4 box (GNKCDL), and G5 box. In addition, the structure modeling had also shown other functional domains: GTP/Mg(2+) binding sites, switch I region, and switch II region. A phylogenic tree analysis indicated that the CsRab8 was clustered with the Rab from Schistosoma japonicum, and trematode and tapeworm came from the same branch, which was different from an evolutional branch built by other species, such as mammal animal, insecta, nematode, and reptile. The recombinant CsRab8 protein was expressed in Escherichia coli and the purified protein was a soluble molecule by 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis analysis. CsRab8 was identified as a component of excretory/secretory products of C. sinensis by western blot analysis. The transcriptional level of CsRab8 at metacercaria stage was the highest at the four stages and higher by 56.49-folds than that at adult worm, 1.23-folds than that at excysted metacercaria, and 2.69-folds than that at egg stage. Immunohistochemical localization analysis showed that CsRab8 was specifically distributed in the tegument, vitellarium, eggs, and testicle of adult worms, and detected on the vitellarium and tegument of metacercaria. Combined with the results, CsRab8 is indispensable for survival and development of parasites, especially for regulating excretory/secretory products secretion.

Endoplasmic Reticulum Protein Quality Control Is Determined by Cooperative Interactions between Hsp/c70 Protein and the CHIP E3 Ligase*

PubMed Central

Matsumura, Yoshihiro; Sakai, Juro; Skach, William R.

2013-01-01

The C terminus of Hsp70 interacting protein (CHIP) E3 ligase functions as a key regulator of protein quality control by binding the C-terminal (M/I)EEVD peptide motif of Hsp/c70(90) with its N-terminal tetratricopeptide repeat (TPR) domain and facilitating polyubiquitination of misfolded client proteins via its C-terminal catalytic U-box. Using CFTR as a model client, we recently showed that the duration of the Hsc70-client binding cycle is a primary determinant of stability. However, molecular features that control CHIP recruitment to Hsp/c70, and hence the fate of the Hsp/c70 client, remain unknown. To understand how CHIP recognizes Hsp/c70, we utilized a dominant negative mutant in which loss of a conserved proline in the U-box domain (P269A) eliminates E3 ligase activity. In a cell-free reconstituted ER-associated degradation system, P269A CHIP inhibited Hsc70-dependent CFTR ubiquitination and degradation in a dose-dependent manner. Optimal inhibition required both the TPR and the U-box, indicating cooperativity between the two domains. Neither the wild type nor the P269A mutant changed the extent of Hsc70 association with CFTR nor the dissociation rate of the Hsc70-CFTR complex. However, the U-box mutation stimulated CHIP binding to Hsc70 while promoting CHIP oligomerization. CHIP binding to Hsc70 binding was also stimulated by the presence of an Hsc70 client with a preference for the ADP-bound state. Thus, the Hsp/c70 (M/I)EEVD motif is not a simple anchor for the TPR domain. Rather CHIP recruitment involves reciprocal allosteric interactions between its TPR and U-box domains and the substrate-binding and C-terminal domains of Hsp/c70. PMID:23990462

Microbe–microbe interactions trigger Mn(II)-oxidizing gene expression

PubMed Central

Liang, Jinsong; Bai, Yaohui; Men, Yujie; Qu, Jiuhui

2017-01-01

Manganese (Mn) is an important metal in geochemical cycles. Some microorganisms can oxidize Mn(II) to Mn oxides, which can, in turn, affect the global cycles of other elements by strong sorption and oxidation effects. Microbe–microbe interactions have important roles in a number of biological processes. However, how microbial interactions affect Mn(II) oxidation still remains unknown. Here, we investigated the interactions between two bacteria (Arthrobacter sp. and Sphingopyxis sp.) in a co-culture, which exhibited Mn(II)-oxidizing activity, although neither were able to oxidize Mn(II) in isolation. We demonstrated that the Mn(II)-oxidizing activity in co-culture was most likely induced via contact-dependent interactions. The expressed Mn(II)-oxidizing protein in the co-culture was purified and identified as a bilirubin oxidase belonging to strain Arthrobacter. Full sequencing of the bilirubin oxidase-encoding gene (boxA) was performed. The Mn(II)-oxidizing protein and the transcripts of boxA were detected in the co-culture, but not in either of the isolated cultures. This indicate that boxA was silent in Arthrobacter monoculture, and was activated in response to presence of Sphingopyxis in the co-culture. Further, transcriptomic analysis by RNA-Seq, extracellular superoxide detection and cell density quantification by flow cytometry indicate induction of boxA gene expression in Arthrobacter was co-incident with a stress response triggered by co-cultivation with Sphingopyxis. Our findings suggest the potential roles of microbial physiological responses to stress induced by other microbes in Mn(II) oxidation and extracellular superoxide production. PMID:27518809

Surface reflectance drives nest box temperature profiles and thermal suitability for target wildlife.

PubMed

Griffiths, Stephen R; Rowland, Jessica A; Briscoe, Natalie J; Lentini, Pia E; Handasyde, Kathrine A; Lumsden, Linda F; Robert, Kylie A

2017-01-01

Thermal properties of tree hollows play a major role in survival and reproduction of hollow-dependent fauna. Artificial hollows (nest boxes) are increasingly being used to supplement the loss of natural hollows; however, the factors that drive nest box thermal profiles have received surprisingly little attention. We investigated how differences in surface reflectance influenced temperature profiles of nest boxes painted three different colors (dark-green, light-green, and white: total solar reflectance 5.9%, 64.4%, and 90.3% respectively) using boxes designed for three groups of mammals: insectivorous bats, marsupial gliders and brushtail possums. Across the three different box designs, dark-green (low reflectance) boxes experienced the highest average and maximum daytime temperatures, had the greatest magnitude of variation in daytime temperatures within the box, and were consistently substantially warmer than light-green boxes (medium reflectance), white boxes (high reflectance), and ambient air temperatures. Results from biophysical model simulations demonstrated that variation in diurnal temperature profiles generated by painting boxes either high or low reflectance colors could have significant ecophysiological consequences for animals occupying boxes, with animals in dark-green boxes at high risk of acute heat-stress and dehydration during extreme heat events. Conversely in cold weather, our modelling indicated that there are higher cumulative energy costs for mammals, particularly smaller animals, occupying light-green boxes. Given their widespread use as a conservation tool, we suggest that before boxes are installed, consideration should be given to the effect of color on nest box temperature profiles, and the resultant thermal suitability of boxes for wildlife, particularly during extremes in weather. Managers of nest box programs should consider using several different colors and installing boxes across a range of both orientations and shade profiles (i.e., levels of canopy cover), to ensure target animals have access to artificial hollows with a broad range of thermal profiles, and can therefore choose boxes with optimal thermal conditions across different seasons.

Surface reflectance drives nest box temperature profiles and thermal suitability for target wildlife

PubMed Central

Rowland, Jessica A.; Briscoe, Natalie J.; Lentini, Pia E.; Handasyde, Kathrine A.; Lumsden, Linda F.; Robert, Kylie A.

2017-01-01

Thermal properties of tree hollows play a major role in survival and reproduction of hollow-dependent fauna. Artificial hollows (nest boxes) are increasingly being used to supplement the loss of natural hollows; however, the factors that drive nest box thermal profiles have received surprisingly little attention. We investigated how differences in surface reflectance influenced temperature profiles of nest boxes painted three different colors (dark-green, light-green, and white: total solar reflectance 5.9%, 64.4%, and 90.3% respectively) using boxes designed for three groups of mammals: insectivorous bats, marsupial gliders and brushtail possums. Across the three different box designs, dark-green (low reflectance) boxes experienced the highest average and maximum daytime temperatures, had the greatest magnitude of variation in daytime temperatures within the box, and were consistently substantially warmer than light-green boxes (medium reflectance), white boxes (high reflectance), and ambient air temperatures. Results from biophysical model simulations demonstrated that variation in diurnal temperature profiles generated by painting boxes either high or low reflectance colors could have significant ecophysiological consequences for animals occupying boxes, with animals in dark-green boxes at high risk of acute heat-stress and dehydration during extreme heat events. Conversely in cold weather, our modelling indicated that there are higher cumulative energy costs for mammals, particularly smaller animals, occupying light-green boxes. Given their widespread use as a conservation tool, we suggest that before boxes are installed, consideration should be given to the effect of color on nest box temperature profiles, and the resultant thermal suitability of boxes for wildlife, particularly during extremes in weather. Managers of nest box programs should consider using several different colors and installing boxes across a range of both orientations and shade profiles (i.e., levels of canopy cover), to ensure target animals have access to artificial hollows with a broad range of thermal profiles, and can therefore choose boxes with optimal thermal conditions across different seasons. PMID:28472147

“Fit” inside the Work-Family Black Box: An Ecology of the Life Course, Cycles of Control Reframing1

PubMed Central

Moen, Phyllis; Kelly, Erin; Huang, Reiping

2009-01-01

Scholars have not fully theorized the multifaceted, interdependent dimensions within the work-family “black box.” Taking an ecology of the life course approach, we theorize common work-family and adequacy constructs as capturing different components of employees' cognitive appraisals of fit between their demands and resources at the interface between home and work. Employees' appraisals of their work-family linkages and of their relative resource adequacy are not made independently but, rather, co-occur as identifiable constellations of fit. The life course approach hypothesizes that shifts in objective demands/ resources at work and at home over the life course result in employees experiencing cycles of control, that is, corresponding shifts in their cognitive assessments of fit. We further theorize patterned appraisals of fit are key mediators between objective work-family conditions and employees' health, well-being and strategic adaptations. As a case example, we examine whether employees' assessments on ten dimensions cluster together as patterned fit constellations, using data from a middle-class sample of 753 employees working at Best Buy's corporate headquarters. We find no single linear construct of fit that captures the complexity within the work-family black box. Instead, respondents experience six distinctive constellations of fit: one optimal, two poor, and three moderate fit constellations. PMID:19809532

SVP-like MADS Box Genes Control Dormancy and Budbreak in Apple

PubMed Central

Wu, Rongmei; Tomes, Sumathi; Karunairetnam, Sakuntala; Tustin, Stuart D.; Hellens, Roger P.; Allan, Andrew C.; Macknight, Richard C.; Varkonyi-Gasic, Erika

2017-01-01

The annual growth cycle of trees is the result of seasonal cues. The onset of winter triggers an endodormant state preventing bud growth and, once a chilling requirement is satisfied, these buds enter an ecodormant state and resume growing. MADS-box genes with similarity to Arabidopsis SHORT VEGETATIVE PHASE (SVP) [the SVP-like and DORMANCY ASSOCIATED MADS-BOX (DAM) genes] have been implicated in regulating flowering and growth-dormancy cycles in perennials. Here, we identified and characterized three DAM-like (MdDAMs) and two SHORT VEGETATIVE PHASE-like (MdSVPs) genes from apple (Malus × domestica ‘Royal Gala’). The expression of MdDAMa and MdDAMc indicated they may play a role in triggering autumn growth cessation. In contrast, the expression of MdDAMb, MdSVPa and MdSVPb suggested a role in maintaining bud dormancy. Consistent with this, ectopic expression of MdDAMb and MdSVPa in ‘Royal Gala’ apple plants resulted in delayed budbreak and architecture change due to constrained lateral shoot outgrowth, but normal flower and fruit development. The association of MdSVPa and MdSVPb expression with floral bud development in the low fruiting ‘Off’ trees of a biennial bearing cultivar ‘Sciros’ suggested the SVP genes might also play a role in floral meristem identity. PMID:28421103

Determination of sample size for higher volatile data using new framework of Box-Jenkins model with GARCH: A case study on gold price

NASA Astrophysics Data System (ADS)

Roslindar Yaziz, Siti; Zakaria, Roslinazairimah; Hura Ahmad, Maizah

2017-09-01

The model of Box-Jenkins - GARCH has been shown to be a promising tool for forecasting higher volatile time series. In this study, the framework of determining the optimal sample size using Box-Jenkins model with GARCH is proposed for practical application in analysing and forecasting higher volatile data. The proposed framework is employed to daily world gold price series from year 1971 to 2013. The data is divided into 12 different sample sizes (from 30 to 10200). Each sample is tested using different combination of the hybrid Box-Jenkins - GARCH model. Our study shows that the optimal sample size to forecast gold price using the framework of the hybrid model is 1250 data of 5-year sample. Hence, the empirical results of model selection criteria and 1-step-ahead forecasting evaluations suggest that the latest 12.25% (5-year data) of 10200 data is sufficient enough to be employed in the model of Box-Jenkins - GARCH with similar forecasting performance as by using 41-year data.

Computer simulations and experimental study on crash box of automobile in low speed collision

NASA Astrophysics Data System (ADS)

Liu, Yanjie; Ding, Lin; Yan, Shengyuan; Yang, Yongsheng

2008-11-01

Based on the problems of energy-absorbing components in the automobile low speed collision process, according to crash box frontal crash test in low speed as the example, the simulation analysis of crash box impact process was carried out by Hyper Mesh and LS-DYNA. Each parameter on the influence modeling was analyzed by mathematics analytical solution and test comparison, which guaranteed that the model was accurate. Combination of experiment and simulation result had determined the weakness part of crash box structure crashworthiness aspect, and improvement method of crash box crashworthiness was discussed. Through numerical simulation of the impact process of automobile crash box, the obtained analysis result was used to optimize the design of crash box. It was helpful to improve the vehicles structure and decrease the collision accident loss at most. And it was also provided a useful method for the further research on the automobile collision.

Dissecting children's observational learning of complex actions through selective video displays.

PubMed

Flynn, Emma; Whiten, Andrew

2013-10-01

Children can learn how to use complex objects by watching others, yet the relative importance of different elements they may observe, such as the interactions of the individual parts of the apparatus, a model's movements, and desirable outcomes, remains unclear. In total, 140 3-year-olds and 140 5-year-olds participated in a study where they observed a video showing tools being used to extract a reward item from a complex puzzle box. Conditions varied according to the elements that could be seen in the video: (a) the whole display, including the model's hands, the tools, and the box; (b) the tools and the box but not the model's hands; (c) the model's hands and the tools but not the box; (d) only the end state with the box opened; and (e) no demonstration. Children's later attempts at the task were coded to establish whether they imitated the hierarchically organized sequence of the model's actions, the action details, and/or the outcome. Children's successful retrieval of the reward from the box and the replication of hierarchical sequence information were reduced in all but the whole display condition. Only once children had attempted the task and witnessed a second demonstration did the display focused on the tools and box prove to be better for hierarchical sequence information than the display focused on the tools and hands only. Copyright © 2013 Elsevier Inc. All rights reserved.

Nanoplankton and picoplankton in the Western English Channel: abundance and seasonality from 2007-2013

NASA Astrophysics Data System (ADS)

Tarran, Glen A.; Bruun, John T.

2015-09-01

The nano- and picoplankton community at Station L4 in the Western English Channel was studied between 2007 and 2013 by flow cytometry to quantify abundance and investigate seasonal cycles within these communities. Nanoplankton included both photosynthetic and heterotrophic eukaryotic single-celled organisms while the picoplankton included picoeukaryote phytoplankton, Synechococcus sp. cyanobacteria and heterotrophic bacteria. A Box-Jenkins Transfer Function climatology analysis of surface data revealed that Synechococcus sp., cryptophytes, and heterotrophic flagellates had bimodal annual cycles. Nanoeukaryotes and both high and low nucleic acid-containing bacteria (HNA and LNA, respectively) groups exhibited unimodal annual cycles. Phaeocystis sp., whilst having clearly defined abundance maxima in spring was not detectable the rest of the year. Coccolithophores exhibited a weak seasonal cycle, with abundance peaks in spring and autumn. Picoeukaryotes did not exhibit a discernable seasonal cycle at the surface. Timings of maximum group abundance varied through the year. Phaeocystis sp. and heterotrophic flagellates peaked in April/May. Nanoeukaryotes and HNA bacteria peaked in June/July and had relatively high abundance throughout the summer. Synechococcus sp., cryptophytes and LNA bacteria all peaked from mid to late September. The transfer function model techniques used represent a useful means of identifying repeating annual cycles in time series data with the added ability to detect trends and harmonic terms at different time scales from months to decades.

The CEO's role in business model reinvention.

PubMed

Govindarajan, Vijay; Trimble, Chris

2011-01-01

Fending off new competitors is a perennial struggle for established companies. Govindarajan and Trimble, of Dartmouth's Tuck School of Business, explain why: Many corporations become too comfortable with their existing business models and neglect the necessary work of radically reinventing them. The authors map out an alternative in their "three boxes" framework. They argue that while a CEO manages the present (box 1), he or she must also selectively forget the past (box 2) in order to create the future (box 3). Infosys chairman N.R. Narayana Murthy mastered the three boxes to reinvigorate his company and greatly increased its changes of enduring for generations.

Identification of 2,4-dihydroxy-5-pyrimidinyl imidothiocarbomate as a novel inhibitor to Y box binding protein-1 (YB-1) and its therapeutic actions against breast cancer.

PubMed

Gunasekaran, Vinoth Prasanna; Nishi, Kumari; Sivakumar, Dakshinamurthy; Sivaraman, Thirunavukkarasu; Mathan, Ganeshan

2018-04-30

In spite of advances in breast cancer treatment and early diagnosis, drug toxicity, cancer relapse, multidrug resistance and metastasis are the major impediment to the developments of efficient drugs. However, unique druggable targets of cancer cells distinct from the normal cells provide new rationale in cancer treatment. Previous reports clearly emphasize the differential expression and localization of Y box binding protein-1 (YB-1) between normal breast tissues and different stages of breast cancer. Y box binding protein-1 is DNA as well as RNA binding protein involved in transcription and translation regulation of various proteins involved in cancer progression, apoptosis, cell cycle, epithelial to mesenchymal transition (EMT) and drug resistance. Particularly, during doxorubicin (DOX) treatment and cancer relapse conditions, YB-1 expression was very high in breast cancer tissues and localized in to nucleus which further favours DOX efflux and metastasis. Moreover, siRNA mediated silencing of YB-1 reduces breast cancer progression and metastasis. In this rationale, using an array of computational methods, 2,4-dihydroxy-5-pyrimidinyl imidothiocarbomate (DPI) has been screened out as a drug-likeness antagonist to the YB-1for cancer treatment. In this study, we determined that DPI was toxic to breast cancer cell lines as individual drug as well as in combination with DOX. Moreover, immunofluorescence and confocal studies showed that DPI decreases DOX induced YB-1 nuclear translocation and increases DOX accumulation in breast cancer cell line. A G1/G0 phase cell cycle arrest and apoptosis was also induced by DPI. Moreover, DPI modulated YB-1 downstream targets such as p53, caspase-3, CDK-1 which are involved in cell cycle progression and apoptosis. Further, metastatic functional analysis revealed that DPI inhibits cell adhesion, migration, invasion in aggressive metastatic cell line and inhibits angiogenesis in chick embryonic chorioallantoic membrane (CAM) model. Meanwhile, DPI alters the expression of YB-1 downstream targets which are involved in metastasis such as VEGFR, caveolin, E-cadherin, cytokeratins, desmin and vimentin in MDA-MB-231 xenograft in chick embryonic CAM membrane. The results clearly demonstrated that DPI inhibited YB-1 nuclear translocation, thereby exhibited anti-apoptotic, anti-proliferative and anti-metastatic activities and increases the therapeutic potential of commercial breast cancer drug doxorubicin. Copyright © 2017 Elsevier B.V. All rights reserved.

Coupled Particle Transport and Pattern Formation in a Nonlinear Leaky-Box Model

NASA Technical Reports Server (NTRS)

Barghouty, A. F.; El-Nemr, K. W.; Baird, J. K.

2009-01-01

Effects of particle-particle coupling on particle characteristics in nonlinear leaky-box type descriptions of the acceleration and transport of energetic particles in space plasmas are examined in the framework of a simple two-particle model based on the Fokker-Planck equation in momentum space. In this model, the two particles are assumed coupled via a common nonlinear source term. In analogy with a prototypical mathematical system of diffusion-driven instability, this work demonstrates that steady-state patterns with strong dependence on the magnetic turbulence but a rather weak one on the coupled particles attributes can emerge in solutions of a nonlinearly coupled leaky-box model. The insight gained from this simple model may be of wider use and significance to nonlinearly coupled leaky-box type descriptions in general.

Regular Cycles of Forward and Backward Signal Propagation in Prefrontal Cortex and in Consciousness

PubMed Central

Werbos, Paul J.; Davis, Joshua J. J.

2016-01-01

This paper addresses two fundamental questions: (1) Is it possible to develop mathematical neural network models which can explain and replicate the way in which higher-order capabilities like intelligence, consciousness, optimization, and prediction emerge from the process of learning (Werbos, 1994, 2016a; National Science Foundation, 2008)? and (2) How can we use and test such models in a practical way, to track, to analyze and to model high-frequency (≥ 500 hz) many-channel data from recording the brain, just as econometrics sometimes uses models grounded in the theory of efficient markets to track real-world time-series data (Werbos, 1990)? This paper first reviews some of the prior work addressing question (1), and then reports new work performed in MATLAB analyzing spike-sorted and burst-sorted data on the prefrontal cortex from the Buzsaki lab (Fujisawa et al., 2008, 2015) which is consistent with a regular clock cycle of about 153.4 ms and with regular alternation between a forward pass of network calculations and a backwards pass, as in the general form of the backpropagation algorithm which one of us first developed in the period 1968–1974 (Werbos, 1994, 2006; Anderson and Rosenfeld, 1998). In business and finance, it is well known that adjustments for cycles of the year are essential to accurate prediction of time-series data (Box and Jenkins, 1970); in a similar way, methods for identifying and using regular clock cycles offer large new opportunities in neural time-series analysis. This paper demonstrates a few initial footprints on the large “continent” of this type of neural time-series analysis, and discusses a few of the many further possibilities opened up by this new approach to “decoding” the neural code (Heller et al., 1995). PMID:27965547

Regular Cycles of Forward and Backward Signal Propagation in Prefrontal Cortex and in Consciousness.

PubMed

Werbos, Paul J; Davis, Joshua J J

2016-01-01

This paper addresses two fundamental questions: (1) Is it possible to develop mathematical neural network models which can explain and replicate the way in which higher-order capabilities like intelligence, consciousness, optimization, and prediction emerge from the process of learning (Werbos, 1994, 2016a; National Science Foundation, 2008)? and (2) How can we use and test such models in a practical way, to track, to analyze and to model high-frequency (≥ 500 hz) many-channel data from recording the brain, just as econometrics sometimes uses models grounded in the theory of efficient markets to track real-world time-series data (Werbos, 1990)? This paper first reviews some of the prior work addressing question (1), and then reports new work performed in MATLAB analyzing spike-sorted and burst-sorted data on the prefrontal cortex from the Buzsaki lab (Fujisawa et al., 2008, 2015) which is consistent with a regular clock cycle of about 153.4 ms and with regular alternation between a forward pass of network calculations and a backwards pass, as in the general form of the backpropagation algorithm which one of us first developed in the period 1968-1974 (Werbos, 1994, 2006; Anderson and Rosenfeld, 1998). In business and finance, it is well known that adjustments for cycles of the year are essential to accurate prediction of time-series data (Box and Jenkins, 1970); in a similar way, methods for identifying and using regular clock cycles offer large new opportunities in neural time-series analysis. This paper demonstrates a few initial footprints on the large "continent" of this type of neural time-series analysis, and discusses a few of the many further possibilities opened up by this new approach to "decoding" the neural code (Heller et al., 1995).

Risk-Based Object Oriented Testing

NASA Technical Reports Server (NTRS)

Rosenberg, Linda H.; Stapko, Ruth; Gallo, Albert

2000-01-01

Software testing is a well-defined phase of the software development life cycle. Functional ("black box") testing and structural ("white box") testing are two methods of test case design commonly used by software developers. A lesser known testing method is risk-based testing, which takes into account the probability of failure of a portion of code as determined by its complexity. For object oriented programs, a methodology is proposed for identification of risk-prone classes. Risk-based testing is a highly effective testing technique that can be used to find and fix the most important problems as quickly as possible.

Uncertainty propagation of p-boxes using sparse polynomial chaos expansions

NASA Astrophysics Data System (ADS)

Schöbi, Roland; Sudret, Bruno

2017-06-01

In modern engineering, physical processes are modelled and analysed using advanced computer simulations, such as finite element models. Furthermore, concepts of reliability analysis and robust design are becoming popular, hence, making efficient quantification and propagation of uncertainties an important aspect. In this context, a typical workflow includes the characterization of the uncertainty in the input variables. In this paper, input variables are modelled by probability-boxes (p-boxes), accounting for both aleatory and epistemic uncertainty. The propagation of p-boxes leads to p-boxes of the output of the computational model. A two-level meta-modelling approach is proposed using non-intrusive sparse polynomial chaos expansions to surrogate the exact computational model and, hence, to facilitate the uncertainty quantification analysis. The capabilities of the proposed approach are illustrated through applications using a benchmark analytical function and two realistic engineering problem settings. They show that the proposed two-level approach allows for an accurate estimation of the statistics of the response quantity of interest using a small number of evaluations of the exact computational model. This is crucial in cases where the computational costs are dominated by the runs of high-fidelity computational models.

Uncertainty propagation of p-boxes using sparse polynomial chaos expansions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schöbi, Roland, E-mail: schoebi@ibk.baug.ethz.ch; Sudret, Bruno, E-mail: sudret@ibk.baug.ethz.ch

2017-06-15

In modern engineering, physical processes are modelled and analysed using advanced computer simulations, such as finite element models. Furthermore, concepts of reliability analysis and robust design are becoming popular, hence, making efficient quantification and propagation of uncertainties an important aspect. In this context, a typical workflow includes the characterization of the uncertainty in the input variables. In this paper, input variables are modelled by probability-boxes (p-boxes), accounting for both aleatory and epistemic uncertainty. The propagation of p-boxes leads to p-boxes of the output of the computational model. A two-level meta-modelling approach is proposed using non-intrusive sparse polynomial chaos expansions tomore » surrogate the exact computational model and, hence, to facilitate the uncertainty quantification analysis. The capabilities of the proposed approach are illustrated through applications using a benchmark analytical function and two realistic engineering problem settings. They show that the proposed two-level approach allows for an accurate estimation of the statistics of the response quantity of interest using a small number of evaluations of the exact computational model. This is crucial in cases where the computational costs are dominated by the runs of high-fidelity computational models.« less

EPA EcoBox

EPA Pesticide Factsheets

This tool box of ecological risk assessment (Eco-box) includes over 400+ links to tools, models, and databases found within EPA and our Government partners designed that can aid risk assessors with performing exposure assessments.

Indoor exposure to toluene from printed matter matters: complementary views from life cycle assessment and risk assessment.

PubMed

Walser, Tobias; Juraske, Ronnie; Demou, Evangelia; Hellweg, Stefanie

2014-01-01

A pronounced presence of toluene from rotogravure printed matter has been frequently observed indoors. However, its consequences to human health in the life cycle of magazines are poorly known. Therefore, we quantified human-health risks in indoor environments with Risk Assessment (RA) and impacts relative to the total impact of toxic releases occurring in the life cycle of a magazine with Life Cycle Assessment (LCA). We used a one-box indoor model to estimate toluene concentrations in printing facilities, newsstands, and residences in a best, average, and worst-case scenario. The modeled concentrations are in the range of the values measured in on-site campaigns. Toluene concentrations can be close or even surpass the occupational legal thresholds in printing facilities in realistic worst-case scenarios. The concentrations in homes can surpass the US EPA reference dose (69 μg/kg/day) in worst-case scenarios, but are still at least 1 order of magnitude lower than in press rooms or newsstands. However, toluene inhaled at home becomes the dominant contribution to the total potential human toxicity impacts of toluene from printed matter when assessed with LCA, using the USEtox method complemented with indoor characterization factors for toluene. The significant contribution (44%) of toluene exposure in production, retail, and use in households, to the total life cycle impact of a magazine in the category of human toxicity, demonstrates that the indoor compartment requires particular attention in LCA. While RA works with threshold levels, LCA assumes that every toxic emission causes an incremental change to the total impact. Here, the combination of the two paradigms provides valuable information on the life cycle stages of printed matter.

IS THE SMALL-SCALE MAGNETIC FIELD CORRELATED WITH THE DYNAMO CYCLE?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karak, Bidya Binay; Brandenburg, Axel, E-mail: bbkarak@nordita.org

2016-01-01

The small-scale magnetic field is ubiquitous at the solar surface—even at high latitudes. From observations we know that this field is uncorrelated (or perhaps even weakly anticorrelated) with the global sunspot cycle. Our aim is to explore the origin, and particularly the cycle dependence, of such a phenomenon using three-dimensional dynamo simulations. We adopt a simple model of a turbulent dynamo in a shearing box driven by helically forced turbulence. Depending on the dynamo parameters, large-scale (global) and small-scale (local) dynamos can be excited independently in this model. Based on simulations in different parameter regimes, we find that, when onlymore » the large-scale dynamo is operating in the system, the small-scale magnetic field generated through shredding and tangling of the large-scale magnetic field is positively correlated with the global magnetic cycle. However, when both dynamos are operating, the small-scale field is produced from both the small-scale dynamo and the tangling of the large-scale field. In this situation, when the large-scale field is weaker than the equipartition value of the turbulence, the small-scale field is almost uncorrelated with the large-scale magnetic cycle. On the other hand, when the large-scale field is stronger than the equipartition value, we observe an anticorrelation between the small-scale field and the large-scale magnetic cycle. This anticorrelation can be interpreted as a suppression of the small-scale dynamo. Based on our studies we conclude that the observed small-scale magnetic field in the Sun is generated by the combined mechanisms of a small-scale dynamo and tangling of the large-scale field.« less

Potential for progress in carbon cycle modeling: models as tools and representations of reality (Invited)

NASA Astrophysics Data System (ADS)

Caldeira, K.

2013-12-01

Some carbon cycle modelers conceive of themselves as developing a representation of reality that will serve as a general purpose tool that can be used to make a wide variety of predictions. However, models are tools used to solve particular problems. If we were to ask, 'what tool is best for fastening two pieces of wood together,' depending on the circumstances that tool could be hammer, a screw driver, or perhaps some sort of glue gun. And the best kind of screw driver might depend on whether we were thinking about Philips or flat headed screws. If there is no unique answer to the question of which type of tool is best for fastening two pieces of wood together, surely there is no unique answer to the question of which type of model is best for making carbon-cycle predictions. We must first understand what problem we are trying to solve. Some modeling studies try to make the most reliable projections, considering as many processes and predicting as many observables as possible, whereas other modeling studies try to show how general trends depend on relatively few (perhaps highly aggregated) processes. This talk will look at CMIP5 carbon-cycle model results and address the issue of the extent to which the overall global-scale trends projected by these detailed models might projected by models with many fewer degrees of freedom. It should be noted that an ocean carbon-cycle model that predicts many observables at local scale is much more easily falsified (and thus in some sense is more ';scientific') than an ocean model that predicts only global scale phenomena. Nevertheless, if all that is needed is a crude estimate of global ocean CO2 uptake (say, to permit as study of the carbon-cycle on land), a simple representation of the ocean carbon cycle may suffice. This talk will take as its jumping off point two quotes: 'All models are wrong, some are useful.' - George E.P. Box 'Models should be as simple as possible but no simpler.' - Albert Einstein (likely an erroneous attribution) Potential for progress in carbon-cycle modeling rests in being clear about the problems we seek to solve, and then developing tools to solve those problems. A global carbon cycle model that represents underlying complexity in all its detail may ultimately prove useless: 'We actually made a map of the country, on the scale of a mile to the mile!' 'Have you used it much?' I enquired. 'It has never been spread out, yet,' said Mein Herr: 'the farmers objected: they said it would cover the whole country, and shut out the sunlight! So we now use the country itself, as its own map, and I assure you it does nearly as well.' - Lewis Carroll

Unconventional bearing capacity analysis and optimization of multicell box girders.

PubMed

Tepic, Jovan; Doroslovacki, Rade; Djelosevic, Mirko

2014-01-01

This study deals with unconventional bearing capacity analysis and the procedure of optimizing a two-cell box girder. The generalized model which enables the local stress-strain analysis of multicell girders was developed based on the principle of cross-sectional decomposition. The applied methodology is verified using the experimental data (Djelosevic et al., 2012) for traditionally formed box girders. The qualitative and quantitative evaluation of results obtained for the two-cell box girder is realized based on comparative analysis using the finite element method (FEM) and the ANSYS v12 software. The deflection function obtained by analytical and numerical methods was found consistent provided that the maximum deviation does not exceed 4%. Multicell box girders are rationally designed support structures characterized by much lower susceptibility of their cross-sectional elements to buckling and higher specific capacity than traditionally formed box girders. The developed local stress model is applied for optimizing the cross section of a two-cell box carrier. The author points to the advantages of implementing the model of local stresses in the optimization process and concludes that the technological reserve of bearing capacity amounts to 20% at the same girder weight and constant load conditions.

Advanced Expander Test Bed Program. Preliminary Design Review Report

DTIC Science & Technology

1991-05-01

Engines & Space Propulsion P.O. Box 109600 West Palm Beach. Florida 33410-9600 May 1991 T :. ’ 3 J i, Prepared for: Lewis Research Center ! Under...IINTRODUCTION .. . . . . . . . . . . . . . . . . . . . . . . I 11 SUMMARY...................................................... 3 A. Design Approach... 3 B. Operating Cycles............................................... 4 C. Oxygen Turbopump

Thinking inside the (lock)box: using banking technology to improve the revenue cycle.

PubMed

D'Eramo, Michael; Umbreit, Lynda

2005-08-01

An integrated, image-based lockbox solution has allowed Columbus, Ohio-based MaternOhio to automate payment posting, reconcilement, and billing; store check and remittance images electronically; and automatically update its in-house patient accounting system and medical records.

No significant impact of Foxf1 siRNA treatment in acute and chronic CCl4 liver injury.

PubMed

Abshagen, Kerstin; Rotberg, Tobias; Genz, Berit; Vollmar, Brigitte

2017-08-01

Chronic liver injury of any etiology is the main trigger of fibrogenic responses and thought to be mediated by hepatic stellate cells. Herein, activating transcription factors like forkhead box f1 are described to stimulate pro-fibrogenic genes in hepatic stellate cells. By using a liver-specific siRNA delivery system (DBTC), we evaluated whether forkhead box f1 siRNA treatment exhibit beneficial effects in murine models of acute and chronic CCl 4 -induced liver injury. Systemic administration of DBTC-forkhead box f1 siRNA in mice was only sufficient to silence forkhead box f1 in acute CCl 4 model, but was not able to attenuate liver injury as measured by liver enzymes and necrotic liver cell area. Therapeutic treatment of mice with DBTC-forkhead box f1 siRNA upon chronic CCl 4 exposition failed to inhibit forkhead box f1 expression and hence lacked to diminish hepatic stellate cells activation or fibrosis development. As a conclusion, DBTC-forkhead box f1 siRNA reduced forkhead box f1 expression in a model of acute but not chronic toxic liver injury and showed no positive effects in either of these mice models. Impact statement As liver fibrosis is a worldwide health problem, antifibrotic therapeutic strategies are urgently needed. Therefore, further developments of new technologies including validation in different experimental models of liver disease are essential. Since activation of hepatic stellate cells is a key event upon liver injury, the activating transcription factor forkhead box f1 (Foxf1) represents a potential target gene. Previously, we evaluated Foxf1 silencing by a liver-specific siRNA delivery system (DBTC), exerting beneficial effects in cholestasis. The present study was designed to confirm the therapeutic potential of Foxf1 siRNA in models of acute and chronic CCl 4 -induced liver injury. DBTC-Foxf1 siRNA was only sufficient to silence Foxf1 in acute CCl 4 model and did not ameliorate liver injury or fibrogenesis. This underlines the significance of the experimental model used. Each model displays specific characteristics in the pathogenic nature, time course and severity of fibrosis and the optimal time point for starting a therapy.

What Is More Important for Fourth-Grade Primary School Students for Transforming Their Potential into Achievement: The Individual or the Environmental Box in Multidimensional Conceptions of Giftedness?

ERIC Educational Resources Information Center

Stoeger, Heidrun; Steinbach, Julia; Obergriesser, Stefanie; Matthes, Benjamin

2014-01-01

Multidimensional models of giftedness specify individual and environmental moderators or catalysts that help transform potential into achievement. However, these models do not state whether the importance of the "individual boxes" and the "environmental boxes" changes during this process. The present study examines whether,…

Can we bet on negative emissions to achieve the 2°C target even under strong carbon cycle feedbacks?

NASA Astrophysics Data System (ADS)

Tanaka, K.; Yamagata, Y.; Yokohata, T.; Emori, S.; Hanaoka, T.

2015-12-01

Negative emission technologies such as Bioenergy with Carbon dioxide Capture and Storage (BioCCS) play an ever more crucial role in meeting the 2°C stabilization target. However, such technologies are currently at their infancy and their future penetrations may fall short of the scale required to stabilize the warming. Furthermore, the overshoot in the mid-century prior to a full realization of negative emissions would give rise to a risk because such a temporal but excessive warming above 2°C might amplify itself by strengthening climate-carbon cycle feedbacks. It has not been extensively assessed yet how carbon cycle feedbacks might play out during the overshoot in the context of negative emissions. This study explores how 2°C stabilization pathways, in particular those which undergo overshoot, can be influenced by carbon cycle feedbacks and asks their climatic and economic consequences. We compute 2°C stabilization emissions scenarios under a cost-effectiveness principle, in which the total abatement costs are minimized such that the global warming is capped at 2°C. We employ a reduced-complexity model, the Aggregated Carbon Cycle, Atmospheric Chemistry, and Climate model (ACC2), which comprises a box model of the global carbon cycle, simple parameterizations of the atmospheric chemistry, and a land-ocean energy balance model. The total abatement costs are estimated from the marginal abatement cost functions for CO2, CH4, N2O, and BC.Our preliminary results show that, if carbon cycle feedbacks turn out to be stronger than what is known today, it would incur substantial abatement costs to keep up with the 2°C stabilization goal. Our results also suggest that it would be less expensive in the long run to plan for a 2°C stabilization pathway by considering strong carbon cycle feedbacks because it would cost more if we correct the emission pathway in the mid-century to adjust for unexpectedly large carbon cycle feedbacks during overshoot. Furthermore, our tentative results point to a key policy message: do not rely on negative emissions to achieve the 2°C target. It would make more sense to gear climate mitigation actions toward the stabilization target without betting on negative emissions because negative emissions might create large overshoot in case of strong feedbacks.

Enhancing signal detection and completely eliminating scattering using quasi-phase-cycling in 2D IR experiments.

PubMed

Bloem, Robbert; Garrett-Roe, Sean; Strzalka, Halina; Hamm, Peter; Donaldson, Paul

2010-12-20

We demonstrate how quasi-phase-cycling achieved by sub-cycle delay modulation can be used to replace optical chopping in a box-CARS 2D IR experiment in order to enhance the signal size, and, at the same time, completely eliminate any scattering contamination. Two optical devices are described that can be used for this purpose, a wobbling Brewster window and a photoelastic modulator. They are simple to construct, easy to incorporate into any existing 2D IR setup, and have attractive features such as a high optical throughput and a fast modulation frequency needed to phase cycle on a shot-to-shot basis.

Polyubiquitination of the B-cell translocation gene 1 and 2 proteins is promoted by the SCF ubiquitin ligase complex containing βTrCP.

PubMed

Sasajima, Hitoshi; Nakagawa, Koji; Kashiwayanagi, Makoto; Yokosawa, Hideyoshi

2012-01-01

B-cell translocation gene 1 and 2 (BTG1 and BTG2) are members of the BTG/Tob antiproliferative protein family, which is able to regulate the cell cycle and cell proliferation. We previously reported that BTG1, BTG2, Tob, and Tob2 are degraded via the ubiquitin-proteasome pathway. In this study, we investigated the mechanism of polyubiquitination of BTG1 and BTG2. Since the Skp1-Cdc53/Cullin 1-F-box protein (SCF) complex functions as one of the major ubiquitin ligases for cell cycle regulation, we first examined interactions between BTG proteins and components of the SCF complex, and found that BTG1 and BTG2 were capable of interacting with the SCF complex containing Cullin-1 (a scaffold protein) and Skp1 (a linker protein). As the SCF complex can ubiquitinate various target proteins by substituting different F-box proteins as subunits that recognize different target proteins, we next examined which F-box proteins could bind the two BTG proteins, and found that Skp2, β-transducin repeat-containing protein 1 (βTrCP1), and βTrCP2 were able to associate with both BTG1 and BTG2. Furthermore, we obtained evidence showing that βTrCP1 enhanced the polyubiquitination of both BTG1 and BTG2 more efficiently than Skp2 did, and that an F-box truncated mutant of βTrCP1 had a dominant negative effect on this polyubiquitination. Thus, we propose that BTG1 and BTG2 are subjected to polyubiquitination, more efficiently when it is mediated by SCFβTrCP than by SCFSkp2.

Using box models to quantify zonal distributions and emissions of halocarbons in the background atmosphere.

NASA Astrophysics Data System (ADS)

Elkins, J. W.; Nance, J. D.; Dutton, G. S.; Montzka, S. A.; Hall, B. D.; Miller, B.; Butler, J. H.; Mondeel, D. J.; Siso, C.; Moore, F. L.; Hintsa, E. J.; Wofsy, S. C.; Rigby, M. L.

2015-12-01

The Halocarbons and other Atmospheric Trace Species (HATS) of NOAA's Global Monitoring Division started measurements of the major chlorofluorocarbons and nitrous oxide in 1977 from flask samples collected at five remote sites around the world. Our program has expanded to over 40 compounds at twelve sites, which includes six in situ instruments and twelve flask sites. The Montreal Protocol for Substances that Deplete the Ozone Layer and its subsequent amendments has helped to decrease the concentrations of many of the ozone depleting compounds in the atmosphere. Our goal is to provide zonal emission estimates for these trace gases from multi-box models and their estimated atmospheric lifetimes in this presentation and make the emission values available on our web site. We plan to use our airborne measurements to calibrate the exchange times between the boxes for 5-box and 12-box models using sulfur hexafluoride where emissions are better understood.

Opto-box: Optical modules and mini-crate for ATLAS pixel and IBL detectors

NASA Astrophysics Data System (ADS)

Bertsche, David

2016-11-01

The opto-box is a custom mini-crate for housing optical modules which process and transfer optoelectronic data. Many novel solutions were developed for the custom design and manufacturing. The system tightly integrates electrical, mechanical, and thermal functionality into a small package of size 35×10x8 cm3. Special attention was given to ensure proper shielding, grounding, cooling, high reliability, and environmental tolerance. The custom modules, which incorporate Application Specific Integrated Circuits, were developed through a cycle of rigorous testing and redesign. In total, fourteen opto-boxes have been installed and loaded with modules on the ATLAS detector. They are currently in operation as part of the LHC run 2 data read-out chain. This conference proceeding is in support of the poster presented at the International Conference on New Frontiers in Physics (ICNFP) 2015 [1].

BeatBox-HPC simulation environment for biophysically and anatomically realistic cardiac electrophysiology.

PubMed

Antonioletti, Mario; Biktashev, Vadim N; Jackson, Adrian; Kharche, Sanjay R; Stary, Tomas; Biktasheva, Irina V

2017-01-01

The BeatBox simulation environment combines flexible script language user interface with the robust computational tools, in order to setup cardiac electrophysiology in-silico experiments without re-coding at low-level, so that cell excitation, tissue/anatomy models, stimulation protocols may be included into a BeatBox script, and simulation run either sequentially or in parallel (MPI) without re-compilation. BeatBox is a free software written in C language to be run on a Unix-based platform. It provides the whole spectrum of multi scale tissue modelling from 0-dimensional individual cell simulation, 1-dimensional fibre, 2-dimensional sheet and 3-dimensional slab of tissue, up to anatomically realistic whole heart simulations, with run time measurements including cardiac re-entry tip/filament tracing, ECG, local/global samples of any variables, etc. BeatBox solvers, cell, and tissue/anatomy models repositories are extended via robust and flexible interfaces, thus providing an open framework for new developments in the field. In this paper we give an overview of the BeatBox current state, together with a description of the main computational methods and MPI parallelisation approaches.

A comparison between skeleton and bounding box models for falling direction recognition

NASA Astrophysics Data System (ADS)

Narupiyakul, Lalita; Srisrisawang, Nitikorn

2017-12-01

Falling is an injury that can lead to a serious medical condition in every range of the age of people. However, in the case of elderly, the risk of serious injury is much higher. Due to the fact that one way of preventing serious injury is to treat the fallen person as soon as possible, several works attempted to implement different algorithms to recognize the fall. Our work compares the performance of two models based on features extraction: (i) Body joint data (Skeleton Data) which are the joint's positions in 3 axes and (ii) Bounding box (Box-size Data) covering all body joints. Machine learning algorithms that were chosen are Decision Tree (DT), Naïve Bayes (NB), K-nearest neighbors (KNN), Linear discriminant analysis (LDA), Voting Classification (VC), and Gradient boosting (GB). The results illustrate that the models trained with Skeleton data are performed far better than those trained with Box-size data (with an average accuracy of 94-81% and 80-75%, respectively). KNN shows the best performance in both Body joint model and Bounding box model. In conclusion, KNN with Body joint model performs the best among the others.

Transcriptional regulation of cellular ageing by the CCAAT box-binding factor CBF/NF-Y.

PubMed

Matuoka, Koozi; Chen, Kuang Yu

2002-09-01

Cellular ageing is a systematic process affecting the entirety of cell structure and function. Since changes in gene expression are extensive and global during ageing, involvement of general transcription regulators in the phenomenon is likely. Here, we focus on NF-Y, the major CCAAT box-binding factor, which exerts differential regulation on a wide variety of genes through its interaction with the CCAAT box present in as many as 25% of the eukaryotic genes. When a cell ages, senescing signals arise, typically through DNA damage due to oxidative stress or telomere shortening, and are transduced to proteins such as p53, retinoblastoma protein, and phosphatidylinositol 3-kinase. Among them, activated p53 family proteins suppress the function of NF-Y and thereby downregulate a set of cell cycle-related genes, including E2F1, which further leads to downregulation of E2F-regulated genes and cell cycle arrest. The p53 family also induces other ageing phenotypes such as morphological alterations and senescence-associated beta-galactosidase (SA-gal) presumably by upregulation of some genes through NF-Y suppression. In fact, the activities of NF-Y and E2F decrease during ageing and a dominant negative NF-YA induces SA-gal. Based on these observations, NF-Y appears to play an important role in the process of cellular ageing.

Assessing image quality of low-cost laparoscopic box trainers: options for residents training at home.

PubMed

Kiely, Daniel J; Stephanson, Kirk; Ross, Sue

2011-10-01

Low-cost laparoscopic box trainers built using home computers and webcams may provide residents with a useful tool for practice at home. This study set out to evaluate the image quality of low-cost laparoscopic box trainers compared with a commercially available model. Five low-cost laparoscopic box trainers including the components listed were compared in random order to one commercially available box trainer: A (high-definition USB 2.0 webcam, PC laptop), B (Firewire webcam, Mac laptop), C (high-definition USB 2.0 webcam, Mac laptop), D (standard USB webcam, PC desktop), E (Firewire webcam, PC desktop), and F (the TRLCD03 3-DMEd Standard Minimally Invasive Training System). Participants observed still image quality and performed a peg transfer task using each box trainer. Participants rated still image quality, image quality with motion, and whether the box trainer had sufficient image quality to be useful for training. Sixteen residents in obstetrics and gynecology took part in the study. The box trainers showing no statistically significant difference from the commercially available model were A, B, C, D, and E for still image quality; A for image quality with motion; and A and B for usefulness of the simulator based on image quality. The cost of the box trainers A-E is approximately $100 to $160 each, not including a computer or laparoscopic instruments. Laparoscopic box trainers built from a high-definition USB 2.0 webcam with a PC (box trainer A) or from a Firewire webcam with a Mac (box trainer B) provide image quality comparable with a commercial standard.

Deciphering the molecular mechanisms underlying the binding of the TWIST1/E12 complex to regulatory E-box sequences

PubMed Central

Bouard, Charlotte; Terreux, Raphael; Honorat, Mylène; Manship, Brigitte; Ansieau, Stéphane; Vigneron, Arnaud M.; Puisieux, Alain; Payen, Léa

2016-01-01

Abstract The TWIST1 bHLH transcription factor controls embryonic development and cancer processes. Although molecular and genetic analyses have provided a wealth of data on the role of bHLH transcription factors, very little is known on the molecular mechanisms underlying their binding affinity to the E-box sequence of the promoter. Here, we used an in silico model of the TWIST1/E12 (TE) heterocomplex and performed molecular dynamics (MD) simulations of its binding to specific (TE-box) and modified E-box sequences. We focused on (i) active E-box and inactive E-box sequences, on (ii) modified active E-box sequences, as well as on (iii) two box sequences with modified adjacent bases the AT- and TA-boxes. Our in silico models were supported by functional in vitro binding assays. This exploration highlighted the predominant role of protein side-chain residues, close to the heart of the complex, at anchoring the dimer to DNA sequences, and unveiled a shift towards adjacent ((-1) and (-1*)) bases and conserved bases of modified E-box sequences. In conclusion, our study provides proof of the predictive value of these MD simulations, which may contribute to the characterization of specific inhibitors by docking approaches, and their use in pharmacological therapies by blocking the tumoral TWIST1/E12 function in cancers. PMID:27151200

Occupancy modeling reveals territory-level effects of nest boxes on the presence, colonization, and persistence of a declining raptor in a fruit-growing region.

PubMed

Shave, Megan E; Lindell, Catherine A

2017-01-01

Nest boxes for predators in agricultural regions are an easily implemented tool to improve local habitat quality with potential benefits for both conservation and agriculture. The potential for nest boxes to increase raptor populations in agricultural regions is of particular interest given their positions as top predators. This study examined the effects of cherry orchard nest boxes on the local breeding population of a declining species, the American Kestrel (Falco sparverius), in a fruit-growing region of Michigan. During the 2013-2016 study, we added a total of 23 new nest boxes in addition to 24 intact boxes installed previously; kestrels used up to 100% of our new boxes each season. We conducted temporally-replicated surveys along four roadside transects divided into 1.6 km × 500 m sites. We developed a multi-season occupancy model under a Bayesian framework and found that nest boxes had strong positive effects on first-year site occupancy, site colonization, and site persistence probabilities. The estimated number of occupied sites increased between 2013 and 2016, which correlated with the increase in number of sites with boxes. Kestrel detections decreased with survey date but were not affected by time of day or activity at the boxes themselves. These results indicate that nest boxes determined the presence of kestrels at our study sites and support the conclusion that the local kestrel population is likely limited by nest site availability. Furthermore, our results are highly relevant to the farmers on whose properties the boxes were installed, for we can conclude that installing a nest box in an orchard resulted in a high probability of kestrels occupying that orchard or the areas adjacent to it.

Thermodynamic modeling of small scale biomass gasifiers: Development and assessment of the ''Multi-Box'' approach.

PubMed

Vakalis, Stergios; Patuzzi, Francesco; Baratieri, Marco

2016-04-01

Modeling can be a powerful tool for designing and optimizing gasification systems. Modeling applications for small scale/fixed bed biomass gasifiers have been interesting due to their increased commercial practices. Fixed bed gasifiers are characterized by a wide range of operational conditions and are multi-zoned processes. The reactants are distributed in different phases and the products from each zone influence the following process steps and thus the composition of the final products. The present study aims to improve the conventional 'Black-Box' thermodynamic modeling by means of developing multiple intermediate 'boxes' that calculate two phase (solid-vapor) equilibriums in small scale gasifiers. Therefore the model is named ''Multi-Box''. Experimental data from a small scale gasifier have been used for the validation of the model. The returned results are significantly closer with the actual case study measurements in comparison to single-stage thermodynamic modeling. Copyright © 2016 Elsevier Ltd. All rights reserved.

Biogeochemical Cycling of Methane in the Proterozoic and Its Role in the Carbon Isotope Budget

NASA Astrophysics Data System (ADS)

Schrag, D. P.; Laakso, T.

2016-12-01

Various studies have proposed that the biogeochemical cycle of methane has played an important role throughout Earth history, both in contributing to greenhouse stability of climate in the Archean and producing carbon isotope variations and climate fluctuations in the Proterozoic and Phanerozoic. Using a simple box model that couples the geochemical cycles on carbon, oxygen, hydrogen, iron, and sulfur, combined with recent studies of methane cycling in anoxic environments, we reexamine the role of methane in both the Archean and Proterozoic, focusing on methane's role in the carbon isotope budget. We find that methane plays a much more modest role at all times of relative anoxia in the deep ocean, which requires an alternative explanation for the carbon isotope record, in particular the "boring billion" during the Mesoproterozoic. In particular, the high burial efficiency driven by lower oxygen levels drives primary production to much lower levels than has been previously described, resulting in relatively little organic matter available for methanogenesis. In addition, the anoxia in deep water results in a reduced role for methanotrophy at these times, and therefore a change in the mechanisms for production of authigenic carbonate, which may have played a significant role in the carbon isotope budget.

Characteristics of sub-daily precipitation extremes in observed data and regional climate model simulations

NASA Astrophysics Data System (ADS)

Beranová, Romana; Kyselý, Jan; Hanel, Martin

2018-04-01

The study compares characteristics of observed sub-daily precipitation extremes in the Czech Republic with those simulated by Hadley Centre Regional Model version 3 (HadRM3) and Rossby Centre Regional Atmospheric Model version 4 (RCA4) regional climate models (RCMs) driven by reanalyses and examines diurnal cycles of hourly precipitation and their dependence on intensity and surface temperature. The observed warm-season (May-September) maxima of short-duration (1, 2 and 3 h) amounts show one diurnal peak in the afternoon, which is simulated reasonably well by RCA4, although the peak occurs too early in the model. HadRM3 provides an unrealistic diurnal cycle with a nighttime peak and an afternoon minimum coinciding with the observed maximum for all three ensemble members, which suggests that convection is not captured realistically. Distorted relationships of the diurnal cycles of hourly precipitation to daily maximum temperature in HadRM3 further evidence that underlying physical mechanisms are misrepresented in this RCM. Goodness-of-fit tests indicate that generalised extreme value distribution is an applicable model for both observed and RCM-simulated precipitation maxima. However, the RCMs are not able to capture the range of the shape parameter estimates of distributions of short-duration precipitation maxima realistically, leading to either too many (nearly all for HadRM3) or too few (RCA4) grid boxes in which the shape parameter corresponds to a heavy tail. This means that the distributions of maxima of sub-daily amounts are distorted in the RCM-simulated data and do not match reality well. Therefore, projected changes of sub-daily precipitation extremes in climate change scenarios based on RCMs not resolving convection need to be interpreted with caution.

Influence of Young's moduli in 3D fluid-structure coupled models of the human cochlea

NASA Astrophysics Data System (ADS)

Böhnke, Frank; Semmelbauer, Sebastian; Marquardt, Torsten

2015-12-01

The acoustic wave propagation in the human cochlea was studied using a tapered box-model with linear assumptions respective to all mechanical parameters. The discretisation and evaluation is conducted by a commercial finite element package (ANSYS). The main difference to former models of the cochlea was the representation of the basilar membrane by a 3D elastic solid. The Young's moduli of this solid were modified to study their influence on the travelling wave. The lymph in the scala vestibuli and scala tympani was represented by a viscous and nearly incompressible fluid finite element approach. Our results show the maximum displacement for f = 2kHz at half of the length of the cochlea in accordance with former experiments. For low frequencies f <200 Hz nearly zero phase shifts were found, whereas for f =1 kHz it reaches values up to -12 cycles depending on the degree of orthotropy.

[A test of the focusing hypothesis for category judgment: an explanation using the mental-box model].

PubMed

Hatori, Tsuyoshi; Takemura, Kazuhisa; Fujii, Satoshi; Ideno, Takashi

2011-06-01

This paper presents a new model of category judgment. The model hypothesizes that, when more attention is focused on a category, the psychological range of the category gets narrower (category-focusing hypothesis). We explain this hypothesis by using the metaphor of a "mental-box" model: the more attention that is focused on a mental box (i.e., a category set), the smaller the size of the box becomes (i.e., a cardinal number of the category set). The hypothesis was tested in an experiment (N = 40), where the focus of attention on prescribed verbal categories was manipulated. The obtained data gave support to the hypothesis: category-focusing effects were found in three experimental tasks (regarding the category of "food", "height", and "income"). The validity of the hypothesis was discussed based on the results.

The two-box model of climate: limitations and applications to planetary habitability and maximum entropy production studies.

PubMed

Lorenz, Ralph D

2010-05-12

The 'two-box model' of planetary climate is discussed. This model has been used to demonstrate consistency of the equator-pole temperature gradient on Earth, Mars and Titan with what would be predicted from a principle of maximum entropy production (MEP). While useful for exposition and for generating first-order estimates of planetary heat transports, it has too low a resolution to investigate climate systems with strong feedbacks. A two-box MEP model agrees well with the observed day : night temperature contrast observed on the extrasolar planet HD 189733b.

Models for nearly every occasion: Part I - One box models.

PubMed

Hewett, Paul; Ganser, Gary H

2017-01-01

The standard "well mixed room," "one box" model cannot be used to predict occupational exposures whenever the scenario involves the use of local controls. New "constant emission" one box models are proposed that permit either local exhaust or local exhaust with filtered return, coupled with general room ventilation or the recirculation of a portion of the general room exhaust. New "two box" models are presented in Part II of this series. Both steady state and transient models were developed. The steady state equation for each model, including the standard one box steady state model, is augmented with an additional factor reflecting the fraction of time the substance was generated during each task. This addition allows the easy calculation of the average exposure for cyclic and irregular emission patterns, provided the starting and ending concentrations are zero or near zero, or the cumulative time across all tasks is long (e.g., several tasks to a full shift). The new models introduce additional variables, such as the efficiency of the local exhaust to immediately capture freshly generated contaminant and the filtration efficiency whenever filtered exhaust is returned to the workspace. Many of the model variables are knowable (e.g., room volume and ventilation rate). A structured procedure for calibrating a model to a work scenario is introduced that can be applied to both continuous and cyclic processes. The "calibration" procedure generates estimates of the generation rate and all of remaining unknown model variables.

Modeling pN2 through Geological Time: Implications for Planetary Climates and Atmospheric Biosignatures.

PubMed

Stüeken, E E; Kipp, M A; Koehler, M C; Schwieterman, E W; Johnson, B; Buick, R

2016-12-01

Nitrogen is a major nutrient for all life on Earth and could plausibly play a similar role in extraterrestrial biospheres. The major reservoir of nitrogen at Earth's surface is atmospheric N 2 , but recent studies have proposed that the size of this reservoir may have fluctuated significantly over the course of Earth's history with particularly low levels in the Neoarchean-presumably as a result of biological activity. We used a biogeochemical box model to test which conditions are necessary to cause large swings in atmospheric N 2 pressure. Parameters for our model are constrained by observations of modern Earth and reconstructions of biomass burial and oxidative weathering in deep time. A 1-D climate model was used to model potential effects on atmospheric climate. In a second set of tests, we perturbed our box model to investigate which parameters have the greatest impact on the evolution of atmospheric pN 2 and consider possible implications for nitrogen cycling on other planets. Our results suggest that (a) a high rate of biomass burial would have been needed in the Archean to draw down atmospheric pN 2 to less than half modern levels, (b) the resulting effect on temperature could probably have been compensated by increasing solar luminosity and a mild increase in pCO 2 , and (c) atmospheric oxygenation could have initiated a stepwise pN 2 rebound through oxidative weathering. In general, life appears to be necessary for significant atmospheric pN 2 swings on Earth-like planets. Our results further support the idea that an exoplanetary atmosphere rich in both N 2 and O 2 is a signature of an oxygen-producing biosphere. Key Words: Biosignatures-Early Earth-Planetary atmospheres. Astrobiology 16, 949-963.

Brane boxes, anomalies, bending, and tadpoles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leigh, R.G.; Rozali, M.

1999-01-01

Certain classes of chiral four-dimensional gauge theories may be obtained as the world volume theories of D5-branes are suspended between networks of NS5-branes, the so-called brane box models. In this paper, we derive the stringy consistency conditions placed on these models, and show that they are equivalent to an anomaly cancellation of the gauge theories. We derive these conditions in the orbifold theories which are {ital T} dual to the elliptic brane box models. Specifically, we show that the expression for tadpoles for unphysical twisted Ramond-Ramond 4-form fields in the orbifold theory are proportional to the gauge anomalies of themore » brane box theory. Thus string consistency is equivalent to world volume gauge anomaly cancellation. Furthermore, we find additional cylinder amplitudes which give the {beta} functions of the gauge theory. We show how these correspond to bending of the NS-branes in the brane box theory. {copyright} {ital 1998} {ital The American Physical Society}« less

Quantifying parameter uncertainty in stochastic models using the Box Cox transformation

NASA Astrophysics Data System (ADS)

Thyer, Mark; Kuczera, George; Wang, Q. J.

2002-08-01

The Box-Cox transformation is widely used to transform hydrological data to make it approximately Gaussian. Bayesian evaluation of parameter uncertainty in stochastic models using the Box-Cox transformation is hindered by the fact that there is no analytical solution for the posterior distribution. However, the Markov chain Monte Carlo method known as the Metropolis algorithm can be used to simulate the posterior distribution. This method properly accounts for the nonnegativity constraint implicit in the Box-Cox transformation. Nonetheless, a case study using the AR(1) model uncovered a practical problem with the implementation of the Metropolis algorithm. The use of a multivariate Gaussian jump distribution resulted in unacceptable convergence behaviour. This was rectified by developing suitable parameter transformations for the mean and variance of the AR(1) process to remove the strong nonlinear dependencies with the Box-Cox transformation parameter. Applying this methodology to the Sydney annual rainfall data and the Burdekin River annual runoff data illustrates the efficacy of these parameter transformations and demonstrate the value of quantifying parameter uncertainty.

Hypoxia and cell cycle regulation of the von Hippel-Lindau tumor suppressor

PubMed Central

Liu, Weijun; Xin, Hong; Eckert, David T.; Brown, Julie A.; Gnarra, James R.

2010-01-01

Inactivation of von Hippel-Lindau tumor suppressor protein (pVHL) is associated with von Hippel-Lindau disease, an inherited cancer syndrome, as well as the majority of patients with sporadic clear cell renal carcinoma (RCC). While the involvement of pVHL in oxygen sensing through targeting HIFα subunits to ubiquitin-dependent proteolysis has been well documented, less is known about pVHL regulation under both normoxic and hypoxic conditions. We found that pVHL levels decreased in hypoxia and that hypoxia-induced cell cycle arrest is associated with pVHL expression in RCC cells. pVHL levels fluctuate during the cell cycle, paralleling cyclin B1 levels, with decreased levels in mitosis and G1. pVHL contains consensus Destruction box sequences, and pVHL associates with Cdh1, an activator of the anaphase promoting complex/cyclosome (APC/C) E3 ubiquitin ligase. We show that pVHL has a decreased half-life in G1, Cdh1 downregulation results in increased pVHL expression, while Cdh1 overexpression results in decreased pVHL expression. Taken together these results suggest that pVHL is a novel substrate of APC/CCdh1. Destruction box-independent pVHL degradation was also detected, indicating that other ubiquitin ligases are also activated for pVHL degradation. PMID:20802534

From Flowers to Worms: Understanding Nature's Cycle.

ERIC Educational Resources Information Center

Texas Child Care, 1995

1995-01-01

Gardening helps children learn how plants sprout, grow, bloom, and then wither away, leaving seeds behind. Participating in this natural process allows children to experience the stages of life. Suggested gardening activities include studying dandelions, focusing on culture for garden plant selection, and constructing a worm box or worm terrarium…

Demographic consequences of nest box use for Red-footed Falcons Falco vespertinus in Central Asia

USGS Publications Warehouse

Bragin, Evgeny A.; Bragin, Alexander E.; Katzner, Todd

2017-01-01

Nest box programs are frequently implemented for the conservation of cavity-nesting birds, but their effectiveness is rarely evaluated in comparison to birds not using nest boxes. In the European Palearctic, Red-footed Falcon Falco vespertinus populations are both of high conservation concern and are strongly associated with nest box programs in heavily managed landscapes. We used a 21-year monitoring dataset collected on 753 nesting attempts by Red-footed Falcons in unmanaged natural or semi-natural habitats to provide basic information on this poorly known species; to evaluate long-term demographic trends; and to evaluate response of demographic parameters of Red-footed Falcons to environmental factors including use of nest boxes. We observed significant differences among years in laying date, offspring loss, and numbers of fledglings produced, but not in egg production. Of these four parameters, offspring loss and, to a lesser extent, number of fledglings exhibited directional trends over time. Variation in laying date and in numbers of eggs were not well explained by any one model, but instead by combinations of models, each with informative terms for nest type. Nevertheless, laying in nest boxes occurred 2.10 ± 0.70 days earlier than in natural nests. In contrast, variation in both offspring loss and numbers of fledglings produced were fairly well explained by a single model including terms for nest type, nest location, and an interaction between the two parameters (65% and 81% model weights respectively), with highest offspring loss in nest boxes on forest edges. Because, for other species, earlier laying dates are associated with more fit individuals, this interaction highlighted a possible ecological trap, whereby birds using nest boxes on forest edges lay eggs earlier but suffer greater offspring loss and produce lower numbers of fledglings than do those in other nesting settings. If nest boxes increase offspring loss for Red-footed Falcons in heavily managed landscapes where populations are at greater risk, or for the many other species of rare or endangered birds supported by nest box programs, these processes could have important demographic and conservation consequences.

Structure of an E3:E2~Ub Complex Reveals an Allosteric Mechanism Shared among RING/U-box Ligases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pruneda, Jonathan N.; Littlefield, Peter J.; Soss, Sarah E.

2012-09-28

Despite the widespread importance of RING/U-box E3 ubiquitin ligases in ubiquitin (Ub) signaling, the mechanismby which this class of enzymes facilitates Ub transfer remains enigmatic. Here, we present a structural model for a RING/U-box E3:E2~Ub complex poised for Ub transfer. The model and additional analyses reveal that E3 binding biases dynamic E2~Ub ensembles toward closed conformations with enhanced reactivity for substrate lysines. We identify a key hydrogen bond between a highly conserved E3 side chain and an E2 backbone carbonyl, observed in all structures of active RING/ U-Box E3/E2 pairs, as the linchpin for allosteric activation of E2~Ub. The conformationalmore » biasing mechanism is generalizable across diverse E2s and RING/U-box E3s, but is not shared by HECT-type E3s. The results provide a structural model for a RING/ U-box E3:E2~Ub ligase complex and identify the long sought-after source of allostery for RING/UBox activation of E2~Ub conjugates.« less

Preliminary analysis on hybrid Box-Jenkins - GARCH modeling in forecasting gold price

NASA Astrophysics Data System (ADS)

Yaziz, Siti Roslindar; Azizan, Noor Azlinna; Ahmad, Maizah Hura; Zakaria, Roslinazairimah; Agrawal, Manju; Boland, John

2015-02-01

Gold has been regarded as a valuable precious metal and the most popular commodity as a healthy return investment. Hence, the analysis and prediction of gold price become very significant to investors. This study is a preliminary analysis on gold price and its volatility that focuses on the performance of hybrid Box-Jenkins models together with GARCH in analyzing and forecasting gold price. The Box-Cox formula is used as the data transformation method due to its potential best practice in normalizing data, stabilizing variance and reduces heteroscedasticity using 41-year daily gold price data series starting 2nd January 1973. Our study indicates that the proposed hybrid model ARIMA-GARCH with t-innovation can be a new potential approach in forecasting gold price. This finding proves the strength of GARCH in handling volatility in the gold price as well as overcomes the non-linear limitation in the Box-Jenkins modeling.

The Development of Web-GIS to support Resort Based Management for Conservation and Biodiversity in Indonesia

NASA Astrophysics Data System (ADS)

Vatresia, A.; Regen, R.

2016-12-01

Biodiversity loss is a global issue, but it is the pressing concern in mega-diverse countries, such as Indonesia. The lack of the data standardisation and remote area spread on 17.504 islands made it hard to organise and to manage without the aid of any technology on it. In this paper, we develop an application for forest rangers to capture the data of biodiversity and conservation in Indonesia that will integrate with web technology to manage the data. All of the processes was supported by the Ministry of Environmental and Forestry in Indonesia as the user of the system. This development was based on the latest law and policy in Indonesia to monitor the performance of conservation activity and biodiversity in Indonesia. It was developed by using Java and PHP programming language. The method we used is System Development Life Cycling (SDLC) and Unified Modelling Language (UML) 2.0 as the design model and the guidance to perform the system. The application was tested by using the method of the black box and the white box methodology that showed the system was rated as a GOOD application by the user. The result of the testing was also showed that all of the function in the system could be use for improving the performance of the user.

Marine phytoplankton stoichiometry mediates nonlinear interactions between nutrient supply, temperature, and atmospheric CO2

NASA Astrophysics Data System (ADS)

Moreno, Allison R.; Hagstrom, George I.; Primeau, Francois W.; Levin, Simon A.; Martiny, Adam C.

2018-05-01

Marine phytoplankton stoichiometry links nutrient supply to marine carbon export. Deviations of phytoplankton stoichiometry from Redfield proportions (106C : 1P) could therefore have a significant impact on carbon cycling, and understanding which environmental factors drive these deviations may reveal new mechanisms regulating the carbon cycle. To explore the links between environmental conditions, stoichiometry, and carbon cycling, we compared four different models of phytoplankton C : P: a fixed Redfield model, a model with C : P given as a function of surface phosphorus concentration (P), a model with C P given as a function of temperature, and a new multi-environmental model that predicts C : P as a function of light, temperature, and P. These stoichiometric models were embedded into a five-box ocean circulation model, which resolves the three major ocean biomes (high-latitude, subtropical gyres, and tropical upwelling regions). Contrary to the expectation of a monotonic relationship between surface nutrient drawdown and carbon export, we found that lateral nutrient transport from lower C : P tropical waters to high C : P subtropical waters could cause carbon export to decrease with increased tropical nutrient utilization. It has been hypothesized that a positive feedback between temperature and pCO2, atm will play an important role in anthropogenic climate change, with changes in the biological pump playing at most a secondary role. Here we show that environmentally driven shifts in stoichiometry make the biological pump more influential, and may reverse the expected positive relationship between temperature and pCO2, atm. In the temperature-only model, changes in tropical temperature have more impact on the Δ pCO2, atm (˜ 41 ppm) compared to subtropical temperature changes (˜ 4.5 ppm). Our multi-environmental model predicted a decline in pCO2, atm of ˜ 46 ppm when temperature spanned a change of 10 °C. Thus, we find that variation in marine phytoplankton stoichiometry and its environmental controlling factors can lead to nonlinear controls on pCO2, atm, suggesting the need for further studies of ocean C : P and the impact on ocean carbon cycling.

Thermohaline circulation and its box models simulation

NASA Astrophysics Data System (ADS)

Bazyura, Kateryna; Polonsky, Alexander; Sannikov, Viktor

2014-05-01

Ocean Thermochaline circulation (THC) is the part of large-scale World Ocean circulation and one of the main climate system components. It is generated by global meridional density gradients, which are controlled by surface heat and freshwater fluxes. THC regulates climate variability on different timescales (from decades to thousands years) [Stocker (2000), Clark (2002)]. Study of paleoclimatic evidences of abrupt and dramatic changes in ocean-atmosphere system in the past (such as, Dansgaard-Oeschger and Heinrich events or Younger Dryas, see e.g., [Rahmstorf (2002), Alley & Clark(1999)]) shows that these events are connected with THC regimes. At different times during last 120,000 years, three THC modes have prevailed in the Atlantic. They can be labeled as stadial, interstadial and Heinrich modes or as cold, warm and off mode. THC collapse (or thermohaline catastrophe) can be one of the consequences of global warming (including modern anthropogenic climate changes occurring at the moment). The ideas underlying different box-model studies, possibility of thermochaline catastrophe in present and past are discussed in this presentation. Response of generalized four box model of North Atlantic thermohaline circulation [developing the model of Griffies & Tzippermann (1995)] on periodic, stochastic and linear forcing is studied in details. To estimate climatic parameters of the box model we used monthly salinity and temperature data of ECMWF operational Ocean Reanalysis System 3 (ORA-S3) and data from atmospheric NCEP/NCAR reanalysis on precipitation, and heat fluxes for 1959-2011. Mean values, amplitude of seasonal cycle, amplitudes and periods of typical interdecadal oscillations, white noise level, linear trend coefficients and their significance level were estimated for every hydrophysical parameter. In response to intense freshwater or heat forcing, THC regime can change resulting in thermohaline catastrophe. We analyze relevant thresholds of external forcing in cases of using linear and nonlinear seawater state equation. In the frame of four-box model it is shown that: 1) The occurrence of the thermohaline catastrophe, which is likely happened at Younger Dryas period or developed as Heinrich events in the past, is improbable in modern climate epoch. 2) Choice of nonlinear seawater equitation of state leads to stabilization of warm mode of THC, which corresponds to modern climate state. 3) Typical white noise in heat and freshwater fluxes leads to generation of multidecadal oscillations of volume transport. Time-scale of these oscillations coincides with Atlantic Multidecadal oscillation periodicity. So, it is shown that that recent climate is characterized by quasi-periodical stable multidecadal THC warm regime. Stocker, T. F., 2000: Past and future reorganisations in the climate system. Quat. Sci.Rev, Vol. 19, P.301-319. Clark U., 2002: The role of the thermohaline circulation in abrupt climate change. Nature. Vol. 415, P.863-869. Rahmstorf S., 2002: Ocean circulation and climate during the past 120000 years. Nature. Vol. 419, P.207-214. Alley, R. B. & Clark, P. U., 1999: The deglaciation of the Northern Hemisphere: a global perspective. Annu.Rev. Earth Planet. Sci. Vol. 27, P.149-182. Griffies S.M., Tziperman E., 1995: A linear thermohaline oscillator driven by stochastic atmospheric forcing. Journal of Climate. Vol. 8. P. 2440-2453.

F-Box Protein FBX92 Affects Leaf Size in Arabidopsis thaliana

PubMed Central

Baute, Joke; Polyn, Stefanie; De Block, Jolien; Blomme, Jonas; Van Lijsebettens, Mieke

2017-01-01

F-box proteins are part of one of the largest families of regulatory proteins that play important roles in protein degradation. In plants, F-box proteins are functionally very diverse, and only a small subset has been characterized in detail. Here, we identified a novel F-box protein FBX92 as a repressor of leaf growth in Arabidopsis. Overexpression of AtFBX92 resulted in plants with smaller leaves than the wild type, whereas plants with reduced levels of AtFBX92 showed, in contrast, increased leaf growth by stimulating cell proliferation. Detailed cellular analysis suggested that AtFBX92 specifically affects the rate of cell division during early leaf development. This is supported by the increased expression levels of several cell cycle genes in plants with reduced AtFBX92 levels. Surprisingly, overexpression of the maize homologous gene ZmFBX92 in maize had no effect on plant growth, whereas ectopic expression in Arabidopsis increased leaf growth. Expression of a truncated form of AtFBX92 showed that the contrasting effects of ZmFBX92 and AtFBX92 gain of function in Arabidopsis are due to the absence of the F-box-associated domain in the ZmFBX92 gene. Our work reveals an additional player in the complex network that determines leaf size and lays the foundation for identifying putative substrates. PMID:28340173

Highly conserved sequences mediate the dynamic interplay of basic helix-loop-helix proteins regulating retinogenesis.

PubMed

Hernandez, Julio; Matter-Sadzinski, Lidia; Skowronska-Krawczyk, Dorota; Chiodini, Florence; Alliod, Christine; Ballivet, Marc; Matter, Jean-Marc

2007-12-28

The atonal homolog 5 (ATH5) protein is central to the transcriptional network regulating the specification of retinal ganglion cells, and its expression comes under the spatiotemporal control of several basic helix-loop-helix (bHLH) proteins in the course of retina development. Monitoring the in vivo occupancy of the ATH5 promoter by the ATH5, Ngn2, and NeuroM proteins and analyzing the DNA motifs they bind, we show that three evolutionarily conserved E-boxes are required for the bHLH proteins to control the different phases of ATH5 expression. E-box 4 mediates the activity of Ngn2, ATH5, and NeuroM along the pathway leading to the conversion of progenitors into newborn neurons. E-box 1, by mediating the antagonistic effects of Ngn2 and HES1 in proliferating progenitors, controls the expansion of the ATH5 expression domain in early retina. E-box 2 is required for the positive feedback by ATH5 that underlies the up-regulation of ATH5 expression when progenitors are going through their last cell cycle. The combinatorial nature of the regulation of the ATH5 promoter suggests that the bHLH proteins involved have no assigned E-boxes but use a common set at which they either cooperate or compete to finely tune ATH5 expression as development proceeds.

Improved method for calibration of exchange flows for a physical transport box model of Tampa Bay, FL USA

EPA Science Inventory

Results for both sequential and simultaneous calibration of exchange flows between segments of a 10-box, one-dimensional, well-mixed, bifurcated tidal mixing model for Tampa Bay are reported. Calibrations were conducted for three model options with different mathematical expressi...

Time Series ARIMA Models of Undergraduate Grade Point Average.

ERIC Educational Resources Information Center

Rogers, Bruce G.

The Auto-Regressive Integrated Moving Average (ARIMA) Models, often referred to as Box-Jenkins models, are regression methods for analyzing sequential dependent observations with large amounts of data. The Box-Jenkins approach, a three-stage procedure consisting of identification, estimation and diagnosis, was used to select the most appropriate…

HAM2D: 2D Shearing Box Model

NASA Astrophysics Data System (ADS)

Gammie, Charles F.; Guan, Xiaoyue

2012-10-01

HAM solves non-relativistic hyperbolic partial differential equations in conservative form using high-resolution shock-capturing techniques. This version of HAM has been configured to solve the magnetohydrodynamic equations of motion in axisymmetry to evolve a shearing box model.

Bayesian inference for multivariate meta-analysis Box-Cox transformation models for individual patient data with applications to evaluation of cholesterol lowering drugs

PubMed Central

Kim, Sungduk; Chen, Ming-Hui; Ibrahim, Joseph G.; Shah, Arvind K.; Lin, Jianxin

2013-01-01

In this paper, we propose a class of Box-Cox transformation regression models with multidimensional random effects for analyzing multivariate responses for individual patient data (IPD) in meta-analysis. Our modeling formulation uses a multivariate normal response meta-analysis model with multivariate random effects, in which each response is allowed to have its own Box-Cox transformation. Prior distributions are specified for the Box-Cox transformation parameters as well as the regression coefficients in this complex model, and the Deviance Information Criterion (DIC) is used to select the best transformation model. Since the model is quite complex, a novel Monte Carlo Markov chain (MCMC) sampling scheme is developed to sample from the joint posterior of the parameters. This model is motivated by a very rich dataset comprising 26 clinical trials involving cholesterol lowering drugs where the goal is to jointly model the three dimensional response consisting of Low Density Lipoprotein Cholesterol (LDL-C), High Density Lipoprotein Cholesterol (HDL-C), and Triglycerides (TG) (LDL-C, HDL-C, TG). Since the joint distribution of (LDL-C, HDL-C, TG) is not multivariate normal and in fact quite skewed, a Box-Cox transformation is needed to achieve normality. In the clinical literature, these three variables are usually analyzed univariately: however, a multivariate approach would be more appropriate since these variables are correlated with each other. A detailed analysis of these data is carried out using the proposed methodology. PMID:23580436

Bayesian inference for multivariate meta-analysis Box-Cox transformation models for individual patient data with applications to evaluation of cholesterol-lowering drugs.

PubMed

Kim, Sungduk; Chen, Ming-Hui; Ibrahim, Joseph G; Shah, Arvind K; Lin, Jianxin

2013-10-15

In this paper, we propose a class of Box-Cox transformation regression models with multidimensional random effects for analyzing multivariate responses for individual patient data in meta-analysis. Our modeling formulation uses a multivariate normal response meta-analysis model with multivariate random effects, in which each response is allowed to have its own Box-Cox transformation. Prior distributions are specified for the Box-Cox transformation parameters as well as the regression coefficients in this complex model, and the deviance information criterion is used to select the best transformation model. Because the model is quite complex, we develop a novel Monte Carlo Markov chain sampling scheme to sample from the joint posterior of the parameters. This model is motivated by a very rich dataset comprising 26 clinical trials involving cholesterol-lowering drugs where the goal is to jointly model the three-dimensional response consisting of low density lipoprotein cholesterol (LDL-C), high density lipoprotein cholesterol (HDL-C), and triglycerides (TG) (LDL-C, HDL-C, TG). Because the joint distribution of (LDL-C, HDL-C, TG) is not multivariate normal and in fact quite skewed, a Box-Cox transformation is needed to achieve normality. In the clinical literature, these three variables are usually analyzed univariately; however, a multivariate approach would be more appropriate because these variables are correlated with each other. We carry out a detailed analysis of these data by using the proposed methodology. Copyright © 2013 John Wiley & Sons, Ltd.

Influence of climate change and marine chemistry on ecological shifts following the Triassic/Jurassic mass extinction

NASA Astrophysics Data System (ADS)

Ritterbush, K. A.; West, A. J.; Berelson, W.; Rosas, S.; Bottjer, D. J.; Yager, J. A.; Corsetti, F. A.

2014-12-01

Two aspects of the Triassic/Jurassic transition that seem incongruous are increasing warming and increasing ecological dominance by siliceous sponges on shallow shelves. Warming is interpreted from proxy data showing increased atmospheric carbon dioxide concentrations associated with eruption pulses of the Central Atlantic Province (CAMP) basalts across rifting Pangea. Post-extinction ecological dominance by siliceous sponges is found in recent field investigations of Nevada and Peru, and literature on the Austrian Alps. Whereas evidence from the Panthalassan siliceous sponge ramps of the early Jurassic clearly records deposition on sub- and tropical shallow shelves (a warm environment), modern sponge occupations of comparable intensity exist only in deep and cold environments. Resolving this apparent contrast requires consideration of silica cycling. Silica is a limiting nutrient for siliceous sponges, and the post-extinction sponges of the earliest Jurassic show desmid spicule morphologies matching modern phenotypic indicators of high silica concentration. During the Triassic the major documented biosiliceous sink was radiolarian deep sea chert deposits despite a major species-level turnover at the extinction. Diatoms did not exist in the Triassic. A major alteration to silica cycling in the early Jurassic could have resulted from increased terrigenous supply for two reasons: increased atmospheric carbon dioxide would likely intensify continental weathering, and the extensive flood basalts produced an easily-weathered silica source. Simple box model calculations allow consideration of supply vs demand, and of the pace of possible changes. Potential weathering rates of silica are contrasted with recent published data on sponge silica sequestration, showing that the presence of the CAMP basalts alone could support increased sponge abundance across tropical carbonate shelves. Estimates of doubling and residence times in a simple one-box model show that the change in silica concentration likely occurred over hundred-thousand year timescales relevant to the post-extinction ecology. The influence of climate and weathering on marine chemistry and ecological opportunity presents an excellent example of interrelated Earth and life systems at a critical transition point.

Rosin-Rammler Distributions in ANSYS Fluent

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dunham, Ryan Q.

In Health Physics monitoring, particles need to be collected and tracked. One method is to predict the motion of potential health hazards with computer models. Particles released from various sources within a glove box can become a respirable health hazard if released into the area surrounding a glove box. The goal of modeling the aerosols in a glove box is to reduce the hazards associated with a leak in the glove box system. ANSYS Fluent provides a number of tools for modeling this type of environment. Particles can be released using injections into the flow path with turbulent properties. Themore » models of particle tracks can then be used to predict paths and concentrations of particles within the flow. An attempt to understand and predict the handling of data by Fluent was made, and results iteratively tracked. Trends in data were studied to comprehend the final results. The purpose of the study was to allow a better understanding of the operation of Fluent for aerosol modeling for future application in many fields.« less

Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly

PubMed Central

Chetnani, Bhaskar

2017-01-01

Abstract A T-box regulator or riboswitch actively monitors the levels of charged/uncharged tRNA and participates in amino acid homeostasis by regulating genes involved in their utilization or biosynthesis. It has an aptamer domain for cognate tRNA recognition and an expression platform to sense the charge state and modulate gene expression. These two conserved domains are connected by a variable linker that harbors additional secondary structural elements, such as Stem III. The structural basis for specific tRNA binding is known, but the structural basis for charge sensing and the role of other elements remains elusive. To gain new structural insights on the T-box mechanism, a molecular envelope was calculated from small angle X-ray scattering data for the Bacillus subtilis glyQS T-box riboswitch in complex with an uncharged tRNAGly. A structural model of an anti-terminated glyQS T-box in complex with its cognate tRNAGly was derived based on the molecular envelope. It shows the location and relative orientation of various secondary structural elements. The model was validated by comparing the envelopes of the wild-type complex and two variants. The structural model suggests that in addition to a possible regulatory role, Stem III could aid in preferential stabilization of the T-box anti-terminated state allowing read-through of regulated genes. PMID:28531275

System load forecasts for an electric utility. [Hourly loads using Box-Jenkins method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uri, N.D.

This paper discusses forecasting hourly system load for an electric utility using Box-Jenkins time-series analysis. The results indicate that a model based on the method of Box and Jenkins, given its simplicity, gives excellent results over the forecast horizon.

Gene transfer of high-mobility group box 1 box-A domain in a rat acute liver failure model.

PubMed

Tanaka, Masayuki; Shinoda, Masahiro; Takayanagi, Atsushi; Oshima, Go; Nishiyama, Ryo; Fukuda, Kazumasa; Yagi, Hiroshi; Hayashida, Tetsu; Masugi, Yohei; Suda, Koichi; Yamada, Shingo; Miyasho, Taku; Hibi, Taizo; Abe, Yuta; Kitago, Minoru; Obara, Hideaki; Itano, Osamu; Takeuchi, Hiroya; Sakamoto, Michiie; Tanabe, Minoru; Maruyama, Ikuro; Kitagawa, Yuko

2015-04-01

High-mobility group box 1 (HMGB1) has recently been identified as an important mediator of various kinds of acute and chronic inflammation. The protein encoded by the box-A domain of the HMGB1 gene is known to act as a competitive inhibitor of HMGB1. In this study, we investigated whether box-A gene transfer results in box-A protein production in rats and assessed therapeutic efficacy in vivo using an acute liver failure (ALF) model. Three types of adenovirus vectors were constructed-a wild type and two mutants-and a mutant vector was then selected based on the secretion from HeLa cells. The secreted protein was subjected to a tumor necrosis factor (TNF) production inhibition test in vitro. The vector was injected via the portal vein in healthy Wistar rats to confirm box-A protein production in the liver. The vector was then injected via the portal vein in rats with ALF. Western blot analysis showed enhanced expression of box-A protein in HeLa cells transfected with one of the mutant vectors. The culture supernatant from HeLa cells transfected with the vector inhibited TNF-α production from macrophages. Expression of box-A protein was confirmed in the transfected liver at 72 h after transfection. Transfected rats showed decreased hepatic enzymes, plasma HMGB1, and hepatic TNF-α messenger RNA levels, and histologic findings and survival were significantly improved. HMGB1 box-A gene transfer results in box-A protein production in the liver and appears to have a beneficial effect on ALF in rats. Copyright © 2015 Elsevier Inc. All rights reserved.

Cscibox: A Software System for Age-Model Construction and Evaluation

NASA Astrophysics Data System (ADS)

Bradley, E.; Anderson, K. A.; Marchitto, T. M., Jr.; de Vesine, L. R.; White, J. W. C.; Anderson, D. M.

2014-12-01

CSciBox is an integrated software system for the construction and evaluation of age models of paleo-environmetal archives, both directly dated and cross dated. The time has come to encourage cross-pollinization between earth science and computer science in dating paleorecords. This project addresses that need. The CSciBox code, which is being developed by a team of computer scientists and geoscientists, is open source and freely available on github. The system employs modern database technology to store paleoclimate proxy data and analysis results in an easily accessible and searchable form. This makes it possible to do analysis on the whole core at once, in an interactive fashion, or to tailor the analysis to a subset of the core without loading the entire data file. CSciBox provides a number of 'components' that perform the common steps in age-model construction and evaluation: calibrations, reservoir-age correction, interpolations, statistics, and so on. The user employs these components via a graphical user interface (GUI) to go from raw data to finished age model in a single tool: e.g., an IntCal09 calibration of 14C data from a marine sediment core, followed by a piecewise-linear interpolation. CSciBox's GUI supports plotting of any measurement in the core against any other measurement, or against any of the variables in the calculation of the age model-with or without explicit error representations. Using the GUI, CSciBox's user can import a new calibration curve or other background data set and define a new module that employs that information. Users can also incorporate other software (e.g., Calib, BACON) as 'plug ins.' In the case of truly large data or significant computational effort, CSciBox is parallelizable across modern multicore processors, or clusters, or even the cloud. The next generation of the CSciBox code, currently in the testing stages, includes an automated reasoning engine that supports a more-thorough exploration of plausible age models and cross-dating scenarios.

Morphometric differences and fluctuating asymmetry in Melipona subnitida Ducke 1910 (Hymenoptera: Apidae) in different types of housing.

PubMed

Lima, C B S; Nunes, L A; Carvalho, C A L; Ribeiro, M F; Souza, B A; Silva, C S B

2016-01-01

A geometric morphometrics approach was applied to evaluate differences in forewing patterns of the Jandaira bee (Melipona subnitida Ducke). For this, we studied the presence of fluctuating asymmetry (FA) in forewing shape and size of colonies kept in either rational hive boxes or natural tree trunks. We detected significant FA for wing size as well as wing shape independent of the type of housing (rational box or tree trunks), indicating the overall presence of stress during the development of the studied specimens. FA was also significant (p < 0.01) between rational boxes, possibly related to the use of various models of rational boxes used for keeping stingless bees. In addition, a Principal Component Analysis indicated morphometric variation between bee colonies kept in either rational hive boxes or in tree trunks, that may be related to the different origins of the bees: tree trunk colonies were relocated natural colonies while rational box colonies originated from multiplying other colonies. We conclude that adequate measures should be taken to reduce the amount of stress during bee handling by using standard models of rational boxes that cause the least disruption.

The two-box model of climate: limitations and applications to planetary habitability and maximum entropy production studies

PubMed Central

Lorenz, Ralph D.

2010-01-01

The ‘two-box model’ of planetary climate is discussed. This model has been used to demonstrate consistency of the equator–pole temperature gradient on Earth, Mars and Titan with what would be predicted from a principle of maximum entropy production (MEP). While useful for exposition and for generating first-order estimates of planetary heat transports, it has too low a resolution to investigate climate systems with strong feedbacks. A two-box MEP model agrees well with the observed day : night temperature contrast observed on the extrasolar planet HD 189733b. PMID:20368253

Performance of a multilevel quantum heat engine of an ideal N-particle Fermi system.

PubMed

Wang, Rui; Wang, Jianhui; He, Jizhou; Ma, Yongli

2012-08-01

We generalize the quantum heat engine (QHE) model which was first proposed by Bender et al. [J. Phys. A 33, 4427 (2000)] to the case in which an ideal Fermi gas with an arbitrary number N of particles in a box trap is used as the working substance. Besides two quantum adiabatic processes, the engine model contains two isoenergetic processes, during which the particles are coupled to energy baths at a high constant energy E(h) and a low constant energy E(c), respectively. Directly employing the finite-time thermodynamics, we find that the power output is enhanced by increasing particle number N (or decreasing minimum trap size L(A)) for given L(A) (or N), without reduction in the efficiency. By use of global optimization, the efficiency at possible maximum power output (EPMP) is found to be universal and independent of any parameter contained in the engine model. For an engine model with any particle-number N, the efficiency at maximum power output (EMP) can be determined under the condition that it should be closest to the EPMP. Moreover, we extend the heat engine to a more general multilevel engine model with an arbitrary 1D power-law potential. Comparison between our engine model and the Carnot cycle shows that, under the same conditions, the efficiency η = 1 - E(c)/E(h) of the engine cycle is bounded from above the Carnot value η(c) =1 - T(c)/T(h).

Gene structure, expression, and DNA methylation characteristics of sea cucumber cyclin B gene during aestivation.

PubMed

Zhu, Aijun; Chen, Muyan; Zhang, Xiumei; Storey, Kenneth B

2016-12-05

The sea cucumber, Apostichopus japonicus, is a good model for studying environmentally-induced aestivation by a marine invertebrate. One of the central requirements of aestivation is the repression of energy-expensive cellular processes such as cell cycle progression. The present study identified the gene structure of the cell cycle regulator, cyclin B, and detected the expression levels of this gene over three stages of the annual aestivation-arousal cycle. Furthermore, the DNA methylation characteristics of cyclin B were analyzed in non-aestivation and deep-aestivation stages of sea cucumbers. We found that the cyclin B promoter contains a CpG island, three CCAAT-boxes and three cell cycle gene homology regions (CHRs). Application of qRT-PCR analysis showed significant downregulation of cyclin B transcript levels during deep-aestivation in comparison with non-aestivation in both intestine and longitudinal muscle, and these returned to basal levels after arousal from aestivation. Methylation analysis of the cyclin B core promoter revealed that its methylation level showed significant differences between non-aestivation and deep-aestivation stages (p<0.05) and interestingly, a positive correlation between Cyclin B transcripts expression and methylation levels of the core promoter was also observed. Our findings suggest that cell cycle progression may be reversibly arrested during aestivation as indicated by the changes in cyclin B expression levels and we propose that DNA methylation is one of the regulatory mechanisms involved in cyclin B transcriptional variation. Copyright © 2016 Elsevier B.V. All rights reserved.

A review of presented mathematical models in Parkinson's disease: black- and gray-box models.

PubMed

Sarbaz, Yashar; Pourakbari, Hakimeh

2016-06-01

Parkinson's disease (PD), one of the most common movement disorders, is caused by damage to the central nervous system. Despite all of the studies on PD, the formation mechanism of its symptoms remained unknown. It is still not obvious why damage only to the substantia nigra pars compacta, a small part of the brain, causes a wide range of symptoms. Moreover, the causes of brain damages remain to be fully elucidated. Exact understanding of the brain function seems to be impossible. On the other hand, some engineering tools are trying to understand the behavior and performance of complex systems. Modeling is one of the most important tools in this regard. Developing quantitative models for this disease has begun in recent decades. They are very effective not only in better understanding of the disease, offering new therapies, and its prediction and control, but also in its early diagnosis. Modeling studies include two main groups: black-box models and gray-box models. Generally, in the black-box modeling, regardless of the system information, the symptom is only considered as the output. Such models, besides the quantitative analysis studies, increase our knowledge of the disorders behavior and the disease symptoms. The gray-box models consider the involved structures in the symptoms appearance as well as the final disease symptoms. These models can effectively save time and be cost-effective for the researchers and help them select appropriate treatment mechanisms among all possible options. In this review paper, first, efforts are made to investigate some studies on PD quantitative analysis. Then, PD quantitative models will be reviewed. Finally, the results of using such models are presented to some extent.

Cdc2-like kinase 2 is a key regulator of the cell cycle via FOXO3a/p27 in glioblastoma.

PubMed

Park, Soon Young; Piao, Yuji; Thomas, Craig; Fuller, Gregory N; de Groot, John F

2016-05-03

Cdc2-like kinase 2 (CLK2) is known as a regulator of RNA splicing that ultimately controls multiple physiological processes. However, the function of CLK2 in glioblastoma progression has not been described. Reverse-phase protein array (RPPA) was performed to identify proteins differentially expressed in CLK2 knockdown cells compared to controls. The RPPA results indicated that CLK2 knockdown influenced the expression of survival-, proliferation-, and cell cycle-related proteins in GSCs. Thus, knockdown of CLK2 expression arrested the cell cycle at the G1 and S checkpoints in multiple GSC lines. Depletion of CLK2 regulated the dephosphorylation of AKT and decreased phosphorylation of Forkhead box O3a (FOXO3a), which not only translocated to the nucleus but also increased p27 expression. In two glioblastoma xenograft models, the survival duration of mice with CLK2-knockdown GSCs was significantly longer than mice with control tumors. Additionally, tumor volumes were significantly smaller in CLK2-knockdown mice than in controls. Knockdown of CLK2 expression reduced the phosphorylation of FOXO3a and decreased Ki-67 in vivo. Finally, high expression of CLK2 protien was significantly associated with worse patient survival. These findings suggest that CLK2 plays a critical role in controlling the cell cycle and survival of glioblastoma via FOXO3a/p27.

Cdc2-like kinase 2 is a key regulator of the cell cycle via FOXO3a/p27 in glioblastoma

PubMed Central

Thomas, Craig; Fuller, Gregory N.; de Groot, John F.

2016-01-01

Cdc2-like kinase 2 (CLK2) is known as a regulator of RNA splicing that ultimately controls multiple physiological processes. However, the function of CLK2 in glioblastoma progression has not been described. Reverse-phase protein array (RPPA) was performed to identify proteins differentially expressed in CLK2 knockdown cells compared to controls. The RPPA results indicated that CLK2 knockdown influenced the expression of survival-, proliferation-, and cell cycle-related proteins in GSCs. Thus, knockdown of CLK2 expression arrested the cell cycle at the G1 and S checkpoints in multiple GSC lines. Depletion of CLK2 regulated the dephosphorylation of AKT and decreased phosphorylation of Forkhead box O3a (FOXO3a), which not only translocated to the nucleus but also increased p27 expression. In two glioblastoma xenograft models, the survival duration of mice with CLK2-knockdown GSCs was significantly longer than mice with control tumors. Additionally, tumor volumes were significantly smaller in CLK2-knockdown mice than in controls. Knockdown of CLK2 expression reduced the phosphorylation of FOXO3a and decreased Ki-67 in vivo. Finally, high expression of CLK2 protien was significantly associated with worse patient survival. These findings suggest that CLK2 plays a critical role in controlling the cell cycle and survival of glioblastoma via FOXO3a/p27. PMID:27050366

Finite element corroboration of buckling phenomena observed in corrugated boxes

Treesearch

Thomas J. Urbanik; Edmond P. Saliklis

2003-01-01

Conventional compression strength formulas for corrugated fiberboard boxes are limited to geometry and material that produce an elastic postbuckling failure. Inelastic postbuckling can occur in squatty boxes and trays, but a mechanistic rationale for unifying observed strength data is lacking. This study combines a finite element model with a parametric design of the...

Cloning, Characterization, Regulation, and Function of Dormancy-Associated MADS-Box Genes from Leafy Spurge

USDA-ARS?s Scientific Manuscript database

DORMANCY-ASSOCIATED MADS-BOX (DAM) genes are SHORT VEGETATIVE PHASE–Like MADS box transcription factors linked to endodormancy induction. We have cloned and characterized several cDNA and genomic clones of DAM genes from the model perennial weed leafy spurge (Euphorbia esula). We present evidence fo...

Gray-box reservoir routing to compute flow propagation in operational forecasting and decision support systems

NASA Astrophysics Data System (ADS)

Russano, Euan; Schwanenberg, Dirk; Alvarado Montero, Rodolfo

2017-04-01

Operational forecasting and decision support systems for flood mitigation and the daily management of water resources require computationally efficient flow routing models. If backwater effects do not play an important role, a hydrological routing approach is often a pragmatic choice. It offers a reasonable accuracy at low computational costs in comparison to a more detailed hydraulic model. This work presents a nonlinear reservoir routing scheme as well as its implementation for the flow propagation between the hydro reservoir Três Marias and a downstream inundation-affected city Pirapora in Brazil. We refer to the model as a gray-box approach due to the identification of the parameter k by a data-driven approach for each reservoir of the cascade, instead of using estimates based on physical characteristics. The model reproduces the discharge at the gauge Pirapora, using 15 reservoirs in the cascade. The obtained results are compared with the ones obtained from the full-hydrodynamic model SOBEK. Results show a relatively good performance for the validation period, with a RMSE of 139.48 for the gray-box model, while the full-hydrodynamic model shows a RMSE of 136.67. The simulation time for a period of several years for the full-hydrodynamic took approximately 64s, while the gray-box model only required about 0.50s. This provides a significant speedup of the computation by only a little trade-off in accuracy, pointing at the potential of the simple approach in the context of time-critical, operational applications. Key-words: flow routing, reservoir routing, gray-box model

A Watched Ocean World Never Boils: Inspecting the Geochemical Impact on Ocean Worlds from Their Thermal Evolution

NASA Astrophysics Data System (ADS)

Spiers, E. M.; Schmidt, B. E.

2018-05-01

I aim to acquire better understanding of coupled thermal evolution and geochemical fluxes of an ocean world through a box model. A box model divides the system into plainer elements with realistically-solvable, dynamic equations.

Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly.

PubMed

Chetnani, Bhaskar; Mondragón, Alfonso

2017-07-27

A T-box regulator or riboswitch actively monitors the levels of charged/uncharged tRNA and participates in amino acid homeostasis by regulating genes involved in their utilization or biosynthesis. It has an aptamer domain for cognate tRNA recognition and an expression platform to sense the charge state and modulate gene expression. These two conserved domains are connected by a variable linker that harbors additional secondary structural elements, such as Stem III. The structural basis for specific tRNA binding is known, but the structural basis for charge sensing and the role of other elements remains elusive. To gain new structural insights on the T-box mechanism, a molecular envelope was calculated from small angle X-ray scattering data for the Bacillus subtilis glyQS T-box riboswitch in complex with an uncharged tRNAGly. A structural model of an anti-terminated glyQS T-box in complex with its cognate tRNAGly was derived based on the molecular envelope. It shows the location and relative orientation of various secondary structural elements. The model was validated by comparing the envelopes of the wild-type complex and two variants. The structural model suggests that in addition to a possible regulatory role, Stem III could aid in preferential stabilization of the T-box anti-terminated state allowing read-through of regulated genes. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Predictive habitat models derived from nest-box occupancy for the endangered Carolina northern flying squirrel in the southern Appalachians

USGS Publications Warehouse

Ford, W. Mark; Evans, A.M.; Odom, Richard H.; Rodrigue, Jane L.; Kelly, C.A.; Abaid, Nicole; Diggins, Corinne A.; Newcomb, Doug

2016-01-01

In the southern Appalachians, artificial nest-boxes are used to survey for the endangered Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus), a disjunct subspecies associated with high elevation (>1385 m) forests. Using environmental parameters diagnostic of squirrel habitat, we created 35 a priori occupancy models in the program PRESENCE for boxes surveyed in western North Carolina, 1996-2011. Our best approximating model showed CNFS denning associated with sheltered landforms and montane conifers, primarily red spruce Picea rubens. As sheltering decreased, decreasing distance to conifers was important. Area with a high probability (>0.5) of occupancy was distributed over 18662 ha of habitat, mostly across 10 mountain ranges. Because nest-box surveys underrepresented areas >1750 m and CNFS forage in conifers, we combined areas of high occupancy with conifer GIS coverages to create an additional distribution model of likely habitat. Regionally, above 1385 m, we determined that 31795 ha could be occupied by CNFS. Known occupied patches ranged from

Possiblity of substituting 12XH3A steel in the manufacture of gears for a Sova motorcycle gearing box

NASA Astrophysics Data System (ADS)

Abramov, L. M.; Karabanov, V. P.; Abramov, V. L.; Astakhin, A. S.

1996-03-01

The experimental work describes the possibility of substituting the expensive alloying steel 12XH3A for the low-cost material (steel 40X) in manufacturing gears of the motor cycle gearing box. It ban be achieved on the basis of the obtained results and with the help of laser melting treatment of small-alloying steel. We can speak about the dependence of laser melting radiation efficiency on the regimes and procedures. The breakage of the gearing box of the motor cycle 'Sova' may be explained by the low carry ability of its first gearing box gear. This investigation includes the determination of the cause of this problem. One of the most wide spread methods of such decisions is the substitution of the used materials by another. The most important criteria for the new materials are: (1) the increase of mechanical characteristics (solidity, plasticity); (2) the increase of such characteristics as hardness, specific percussive viscosity; (3) the improvement of the technological characteristics; (4) the condencention of the manufacturing expenditures (economical effect). In accordance with these creations some materials (35X, 40X, 20XH, 40XHM steels) were chosen. The best material is 40X steel, because it allows us to treat the gears by laser radiation with the surface melt. Surface melt allows us to produce: (1) martensite structure with high solidity and low percussive viscosity; (2) martensite structure with chrome carbides and high percussive viscosity, but low plasticity; (3) amorphous or monocrystallic structures with the best characteristics. The last structure has the best characteristics because dislocation defects in such material are practically absent. Also, the amorphous surface of the materials is the most interesting. The spirit of the investigation is to define the parameters of production such as radiation power, size of laser spot, and speed of spot.

Stochastic Thermodynamics of a Particle in a Box.

PubMed

Gong, Zongping; Lan, Yueheng; Quan, H T

2016-10-28

The piston system (particles in a box) is the simplest paradigmatic model in traditional thermodynamics. However, the recently established framework of stochastic thermodynamics (ST) fails to apply to this model system due to the embedded singularity in the potential. In this Letter, we study the ST of a particle in a box by adopting a novel coordinate transformation technique. Through comparing with the exact solution of a breathing harmonic oscillator, we obtain analytical results of work distribution for an arbitrary protocol in the linear response regime and verify various predictions of the fluctuation-dissipation relation. When applying to the Brownian Szilard engine model, we obtain the optimal protocol λ_{t}=λ_{0}2^{t/τ} for a given sufficiently long total time τ. Our study not only establishes a paradigm for studying ST of a particle in a box but also bridges the long-standing gap in the development of ST.

Fine root dynamics in moso bamboo and Japanese cedar forest by scanner method in central Taiwan

NASA Astrophysics Data System (ADS)

Chen, Zhi-Wei; Lin, Po-Hsuan; Kume, Tomonori

2017-04-01

Phyllostachys pubescens is one of the most important economic plant in the world. Phyllostachys pubescens originates from China and it had been introduced to neighbor countries about three hundred ago due to its economic value. But substantial bamboo forests were abandoned due to declines in demand. These unmanaged bamboo forests have been expanding to adjacent original forests in northern Taiwan. This vegetation alternation may not only decrease the local biodiversity but also affect the carbon cycle. Fine roots are responsible for water and nutrients acquisition and forming the most active part of the whole root system. The characteristics of fine roots are non-woody, small diameter and short lifespan. When roots keep producing new roots and replacing old roots, carbon and nutrients was transported into soil. Consequently, fine root production is one of the important component to understand the below-ground carbon cycle. However, there is few studies about fine root production in moso bamboo forests. We still lack effective method to obtain quantitative and objective data in Taiwan. It severely limits us to understand the below-ground carbon dynamics there. Minirhizotrons method has been used to investigate fine root dynamics by inserting transparent tubes into soil and by comparing changes in root length in images taken by micro-camera. But this method has some shortcomings; i.e. Most of image analysis are conducted manually and time-consuming. And it is difficult to estimate the stand level fine root production from small observation view. A new method "scanner method", which collect A4-size image (bigger than minirhizotrons) can overcome some parts of the shortcoming of minirhizotrons. The transparent acrylic box with A4-box view is inserted into soil and the interface between soil and box is scanned by commercial scanner. We can monitor the total projected root area, growth and decomposition separately by series of images. The primary objective of this study is to characterize the temporal and spatial variation of fine root dynamics in moso bamboo forests in central Taiwan by using scanner method with 6 acrylic boxes. Other the other hand, this study compared the result with those of adjacent Japanese cedar forests with 8 acrylic boxes. Consequently, we found the fine root production rate and decomposition rate of the bamboo forest are higher than cedar forest. Also, the timing of first observation of new roots was earlier in bamboo forest than cedar forest. This study also examined differences of temporal patterns among measurement locations based on long-term data after box installation.

A Box-Cox normal model for response times.

PubMed

Klein Entink, R H; van der Linden, W J; Fox, J-P

2009-11-01

The log-transform has been a convenient choice in response time modelling on test items. However, motivated by a dataset of the Medical College Admission Test where the lognormal model violated the normality assumption, the possibilities of the broader class of Box-Cox transformations for response time modelling are investigated. After an introduction and an outline of a broader framework for analysing responses and response times simultaneously, the performance of a Box-Cox normal model for describing response times is investigated using simulation studies and a real data example. A transformation-invariant implementation of the deviance information criterium (DIC) is developed that allows for comparing model fit between models with different transformation parameters. Showing an enhanced description of the shape of the response time distributions, its application in an educational measurement context is discussed at length.

Non-linear hydrodynamic instability and turbulence in eccentric astrophysical discs with vertical structure

NASA Astrophysics Data System (ADS)

Wienkers, A. F.; Ogilvie, G. I.

2018-07-01

Non-linear evolution of the parametric instability of inertial waves inherent to eccentric discs is studied by way of a new local numerical model. Mode coupling of tidal deformation with the disc eccentricity is known to produce exponentially growing eccentricities at certain mean-motion resonances. However, the details of an efficient saturation mechanism balancing this growth still are not fully understood. This paper develops a local numerical model for an eccentric quasi-axisymmetric shearing box which generalizes the often-used Cartesian shearing box model. The numerical method is an overall second-order well-balanced finite volume method which maintains the stratified and oscillatory steady-state solution by construction. This implementation is employed to study the non-linear outcome of the parametric instability in eccentric discs with vertical structure. Stratification is found to constrain the perturbation energy near the mid-plane and localize the effective region of inertial wave breaking that sources turbulence. A saturated marginally sonic turbulent state results from the non-linear breaking of inertial waves and is subsequently unstable to large-scale axisymmetric zonal flow structures. This resulting limit-cycle behaviour reduces access to the eccentric energy source and prevents substantial transport of angular momentum radially through the disc. Still, the saturation of this parametric instability of inertial waves is shown to damp eccentricity on a time-scale of a thousand orbital periods. It may thus be a promising mechanism for intermittently regaining balance with the exponential growth of eccentricity from the eccentric Lindblad resonances and may also help explain the occurrence of 'bursty' dynamics such as the superhump phenomenon.

F-Box Protein FBX92 Affects Leaf Size in Arabidopsis thaliana.

PubMed

Baute, Joke; Polyn, Stefanie; De Block, Jolien; Blomme, Jonas; Van Lijsebettens, Mieke; Inzé, Dirk

2017-05-01

F-box proteins are part of one of the largest families of regulatory proteins that play important roles in protein degradation. In plants, F-box proteins are functionally very diverse, and only a small subset has been characterized in detail. Here, we identified a novel F-box protein FBX92 as a repressor of leaf growth in Arabidopsis. Overexpression of AtFBX92 resulted in plants with smaller leaves than the wild type, whereas plants with reduced levels of AtFBX92 showed, in contrast, increased leaf growth by stimulating cell proliferation. Detailed cellular analysis suggested that AtFBX92 specifically affects the rate of cell division during early leaf development. This is supported by the increased expression levels of several cell cycle genes in plants with reduced AtFBX92 levels. Surprisingly, overexpression of the maize homologous gene ZmFBX92 in maize had no effect on plant growth, whereas ectopic expression in Arabidopsis increased leaf growth. Expression of a truncated form of AtFBX92 showed that the contrasting effects of ZmFBX92 and AtFBX92 gain of function in Arabidopsis are due to the absence of the F-box-associated domain in the ZmFBX92 gene. Our work reveals an additional player in the complex network that determines leaf size and lays the foundation for identifying putative substrates. © The Author 2017. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists.

Price of gasoline: forecasting comparisons. [Box-Jenkins, econometric, and regression methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bopp, A.E.; Neri, J.A.

Gasoline prices are simulated using three popular forecasting methodologies: A Box--Jenkins type method, an econometric method, and a regression method. One-period-ahead and 18-period-ahead comparisons are made. For the one-period-ahead method, a Box--Jenkins type time-series model simulated best, although all do well. However, for the 18-period simulation, the econometric and regression methods perform substantially better than the Box-Jenkins formulation. A rationale for and implications of these results ae discussed. 11 references.

Correlation of Structural Analysis and Test Results for the McDonnell Douglas Stitched/RFI All-Composite Wing Stub Box

NASA Technical Reports Server (NTRS)

Wang, John T.; Jegley, Dawn C.; Bush, Harold G.; Hinrichs, Stephen C.

1996-01-01

The analytical and experimental results of an all-composite wing stub box are presented in this report. The wing stub box, which is representative of an inboard portion of a commercial transport high-aspect-ratio wing, was fabricated from stitched graphite-epoxy material with a Resin Film Infusion manufacturing process. The wing stub box was designed and constructed by the McDonnell Douglas Aerospace Company as part of the NASA Advanced Composites Technology program. The test article contained metallic load-introduction structures on the inboard and outboard ends of the graphite-epoxy wing stub box. The root end of the inboard load introduction structure was attached to a vertical reaction structure, and an upward load was applied to the outermost tip of the outboard load introduction structure to induce bending of the wing stub box. A finite element model was created in which the center portion of the wing-stub-box upper cover panel was modeled with a refined mesh. The refined mesh was required to represent properly the geometrically nonlinear structural behavior of the upper cover panel and to predict accurately the strains in the stringer webs of the stiffened upper cover panel. The analytical and experimental results for deflections and strains are in good agreement.

Design of the Cross Section Shape of AN Aluminum Crash Box for Crashworthiness Enhancement of a CAR

NASA Astrophysics Data System (ADS)

Kim, S. B.; Huh, H.; Lee, G. H.; Yoo, J. S.; Lee, M. Y.

This paper deals with the crashworthiness of an aluminum crash box for an auto-body with the various shapes of cross section such as a rectangle, a hexagon and an octagon. First, crash boxes with various cross sections were tested with numerical simulation to obtain the energy absorption capacity and the mean load. In case of the simple axial crush, the octagon shape shows higher mean load and energy absorption than the other two shapes. Secondly, the crash boxes were assembled to a simplified auto-body model for the overall crashworthiness. The model consists of a bumper, crash boxes, front side members and a sub-frame representing the behavior of a full car at the low speed impact. The analysis result shows that the rectangular cross section shows the best performance as a crash box which deforms prior to the front side member. The hexagonal and octagonal cross sections undergo torsion and local buckling as the width of cross section decreases while the rectangular cross section does not. The simulation result of the rectangular crash box was verified with the experimental result. The simulation result shows close tendency in the deformed shape and the load-displacement curve to the experimental result.

New Approach in Filling of Fixed-Point Cells: Case Study of the Melting Point of Gallium

NASA Astrophysics Data System (ADS)

Bojkovski, J.; Hiti, M.; Batagelj, V.; Drnovšek, J.

2008-02-01

The typical way of constructing fixed-point cells is very well described in the literature. The crucible is loaded with shot, or any other shape of pure metal, inside an argon-filled glove box. Then, the crucible is carefully slid into a fused-silica tube that is closed at the top with an appropriate cap. After that, the cell is removed from the argon glove box and melted inside a furnace while under vacuum or filled with an inert gas like argon. Since the metal comes as shot, or in some other shape such as rods of various sizes, and takes more volume than the melted material, it is necessary to repeat the procedure until a sufficient amount of material is introduced into the crucible. With such a procedure, there is the possibility of introducing additional impurities into the pure metal with each cycle of melting the material and putting it back into the glove box to fill the cell. Our new approach includes the use of a special, so-called dry-box system, which is well known in chemistry. The atmosphere inside the dry box contains less than 20 ppm of water and less than 3 ppm of oxygen. Also, the size of the dry box allows it to contain a furnace for melting materials, not only for gallium but for higher-temperature materials as well. With such an approach, the cell and all its parts (pure metal, graphite, fused-silica tube, and cap) are constantly inside the controlled atmosphere, even while melting the material and filling the crucible. With such a method, the possibility of contaminating the cell during the filling process is minimized.

Box-modeling of 15N/14N in mammals.

PubMed

Balter, Vincent; Simon, Laurent; Fouillet, Hélène; Lécuyer, Christophe

2006-03-01

The 15N/14N signature of animal proteins is now commonly used to understand their physiology and quantify the flows of nutrient in trophic webs. These studies assume that animals are predictably 15N-enriched relative to their food, but the isotopic mechanism which accounts for this enrichment remains unknown. We developed a box model of the nitrogen isotope cycle in mammals in order to predict the 15N/14N ratios of body reservoirs as a function of time, N intake and body mass. Results of modeling show that a combination of kinetic isotope fractionation during the N transfer between amines and equilibrium fractionation related to the reversible conversion of N-amine into ammonia is required to account for the well-established approximately 4 per thousand 15N-enrichment of body proteins relative to the diet. This isotopic enrichment observed in proteins is due to the partial recycling of 15N-enriched urea and the urinary excretion of a fraction of the strongly 15N-depleted ammonia reservoir. For a given body mass and diet delta15N, the isotopic compositions are mainly controlled by the N intake. Increase of the urea turnover combined with a decrease of the N intake lead to calculate a delta15N increase of the proteins, in agreement with the observed increase of collagen delta15N of herbivorous animals with aridity. We further show that the low delta15N collagen values of cave bears cannot be attributed to the dormancy periods as it is commonly thought, but inversely to the hyperphagia behavior. This model highlights the need for experimental investigations performed with large mammals in order to improve our understanding of natural variations of delta15N collagen.

An effective box trap for capturing lynx

Treesearch

Jay A. Kolbe; John R. Squires; Thomas W. Parker

2003-01-01

We designed a box trap for capturing lynx (Lynx lynx) that is lightweight, safe, effective, and less expensive than many commercial models. It can be constructed in approximately 3-4 hours from readily available materials. We used this trap to capture 40 lynx 89 times (96% of lynx entering traps) and observed no trapping related injuries. We compare our box...

Mechanisms of pseudosubstrate inhibition of the anaphase promoting complex by Acm1

PubMed Central

Burton, Janet L; Xiong, Yong; Solomon, Mark J

2011-01-01

The anaphase promoting complex (APC) is a ubiquitin ligase that promotes the degradation of cell-cycle regulators by the 26S proteasome. Cdc20 and Cdh1 are WD40-containing APC co-activators that bind destruction boxes (DB) and KEN boxes within substrates to recruit them to the APC for ubiquitination. Acm1 is an APCCdh1 inhibitor that utilizes a DB and a KEN box to bind Cdh1 and prevent substrate binding, although Acm1 itself is not a substrate. We investigated what differentiates an APC substrate from an inhibitor. We identified the Acm1 A-motif that interacts with Cdh1 and together with the DB and KEN box is required for APCCdh1 inhibition. A genetic screen identified Cdh1 WD40 domain residues important for Acm1 A-motif interaction and inhibition that appears to reside near Cdh1 residues important for DB recognition. Specific lysine insertion mutations within Acm1 promoted its ubiquitination by APCCdh1 whereas lysine removal from the APC substrate Hsl1 converted it into a potent APCCdh1 inhibitor. These findings suggest that tight Cdh1 binding combined with the inaccessibility of ubiquitinatable lysines contributes to pseudosubstrate inhibition of APCCdh1. PMID:21460798

Comparison of distributed reacceleration and leaky-box models of cosmic-ray abundances (Z = 3-28)

NASA Technical Reports Server (NTRS)

Letaw, John R.; Silberberg, Rein; Tsao, C. H.

1993-01-01

A large collection of elemental and isotopic cosmic-ray data has been analyzed using the leaky-box transport model with and without reacceleration in the interstellar medium. Abundances of isotopes and elements with charges Z = 3-28 and energies E = 10 MeV/nucleon-1 TeV/nucleon were explored. Our results demonstrate that reacceleration models make detailed and accurate predictions with the same number of parameters or fewer as standard leaky-box models. Ad hoc fitting parameters in the standard model are replaced by astrophysically significant reacceleration parameters. Distributed reacceleration models explain the peak in secondary-to-primary ratios around 1 GeV/nucleon. They diminish the discrepancy between rigidity-dependent leakage and energy-independent anisotropy. They also offer the possibility of understanding isotopic anomalies at low energy.

CSciBox: An Intelligent Assistant for Dating Ice and Sediment Cores

NASA Astrophysics Data System (ADS)

Finlinson, K.; Bradley, E.; White, J. W. C.; Anderson, K. A.; Marchitto, T. M., Jr.; de Vesine, L. R.; Jones, T. R.; Lindsay, C. M.; Israelsen, B.

2015-12-01

CSciBox is an integrated software system for the construction and evaluation of age models of paleo-environmental archives. It incorporates a number of data-processing and visualization facilities, ranging from simple interpolation to reservoir-age correction and 14C calibration via the Calib algorithm, as well as a number of firn and ice-flow models. It employs modern database technology to store paleoclimate proxy data and analysis results in an easily accessible and searchable form, and offers the user access to those data and computational elements via a modern graphical user interface (GUI). In the case of truly large data or computations, CSciBox is parallelizable across modern multi-core processors, or clusters, or even the cloud. The code is open source and freely available on github, as are one-click installers for various versions of Windows and Mac OSX. The system's architecture allows users to incorporate their own software in the form of computational components that can be built smoothly into CSciBox workflows, taking advantage of CSciBox's GUI, data importing facilities, and plotting capabilities. To date, BACON and StratiCounter have been integrated into CSciBox as embedded components. The user can manipulate and compose all of these tools and facilities as she sees fit. Alternatively, she can employ CSciBox's automated reasoning engine, which uses artificial intelligence techniques to explore the gamut of age models and cross-dating scenarios automatically. The automated reasoning engine captures the knowledge of expert geoscientists, and can output a description of its reasoning.

Cosmic ray antiprotons in closed galaxy model

NASA Technical Reports Server (NTRS)

Protheroe, R.

1981-01-01

The flux of secondary antiprotons expected for the leaky-box model was calculated as well as that for the closed galaxy model of Peters and Westergard (1977). The antiproton/proton ratio observed at several GeV is a factor of 4 higher than the prediction for the leaky-box model but is consistent with that predicted for the closed galaxy model. New low energy data is not consistent with either model. The possibility of a primary antiproton component is discussed.

The Particle/Wave-in-a-Box Model in Dutch Secondary Schools

ERIC Educational Resources Information Center

Hoekzema, Dick; van den Berg, Ed; Schooten, Gert; van Dijk, Leo

2007-01-01

The combination of mathematical and conceptual difficulties makes teaching quantum physics at secondary schools a precarious undertaking. With many of the conceptual difficulties being unavoidable, simplifying the mathematics becomes top priority. The particle/wave-in-a-box provides a teaching model which includes many aspects of serious …

SUSCEPTIBILITY OF A GULF OF MEXICO ESTUARY TO HYPOXIA: AN ANALYSIS USING BOX MODELS

EPA Science Inventory

The extent of hypoxia and the physical factors affecting development and maintenance of hypoxia were examined for Pensacola Bay, Florida (USA) by conducting monthly water quality surveys for 3 years and by constructing salt-and-water balance box models using the resulting data. W...

The Analysis of Organizational Diagnosis on Based Six Box Model in Universities

ERIC Educational Resources Information Center

Hamid, Rahimi; Siadat, Sayyed Ali; Reza, Hoveida; Arash, Shahin; Ali, Nasrabadi Hasan; Azizollah, Arbabisarjou

2011-01-01

Purpose: The analysis of organizational diagnosis on based six box model at universities. Research method: Research method was descriptive-survey. Statistical population consisted of 1544 faculty members of universities which through random strafed sampling method 218 persons were chosen as the sample. Research Instrument were organizational…

The First Sports Medicine Books in English.

ERIC Educational Resources Information Center

Ryan, Allan J.

The modern history of sports medicine is chronicled in a discussion of the first writings in English on sports medicine. What may have been the first writing in English is a section on first aid in the ENCYCLOPEDIA OF SPORT, published in England in 1898. It describes injuries commonly sustained in angling, boxing, cricket, cycling, football,…

77 FR 19714 - Folding Gift Boxes From China; Institution of a Five-Year Review of the Antidumping Duty Order

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-02

... conditions or business cycle for the Domestic Like Product that have occurred in the United States or in the... of business proprietary information (BPI) under an administrative protective order (APO) and APO... Subject Merchandise, a U.S. or foreign trade or business association, or another interested party...

Prestressing force monitoring method for a box girder through distributed long-gauge FBG sensors

NASA Astrophysics Data System (ADS)

Chen, Shi-Zhi; Wu, Gang; Xing, Tuo; Feng, De-Cheng

2018-01-01

Monitoring prestressing forces is essential for prestressed concrete box girder bridges. However, the current monitoring methods used for prestressing force were not applicable for a box girder neither because of the sensor’s setup being constrained or shear lag effect not being properly considered. Through combining with the previous analysis model of shear lag effect in the box girder, this paper proposed an indirect monitoring method for on-site determination of prestressing force in a concrete box girder utilizing the distributed long-gauge fiber Bragg grating sensor. The performance of this method was initially verified using numerical simulation for three different distribution forms of prestressing tendons. Then, an experiment involving two concrete box girders was conducted to study the feasibility of this method under different prestressing levels preliminarily. The results of both numerical simulation and lab experiment validated this method’s practicability in a box girder.

The effect of moxibustion on alleviating menstrual pain in a population of young nursing students: A prospective randomized cross-over pilot study.

PubMed

Gao, Jing; Wang, Qi; Xian, Shaoxiang; Feng, Yue-mei; Cao, Wei-xin; Ye, Jing-yun; Zhang, Qing-qing; Zou, Cai-lian; Wu, Qing-guang; Liu, Si-jun

2015-12-01

To investigate the effect of moxibustion on alleviating menstrual pain and relieving the symptoms of dysmenorrhea in a cohort of young nursing students in China. A randomized double blind clinical trial of crossover design was used. In the two-phase study, a total of 56 nursing students with menstrual pain in Guangzhou University of Chinese Medicine in China was randomly allocated into two groups. In the first treatment phase, the participants in Group A (n=28) received moxibustion therapy from five days before the menstrual period to the onset through a specific heating box in which burning moxa stick was fixed, the participants in Group B (n=28) received the same heating box but with a paper-wrapped stick incense fixed inside (placebo therapy) during the same intervention period. The acupoints Guanyuan(CV4) and Shenque(CV8) were selected for treatment. After the first treatment phase for two menstrual cycles, the intervention was stopped for three menstrual cycles during a wash period. In the second treatment phase, the intervention of two groups were switched. Group A received the placebo therapy and Group B received moxibustion therapy. NRS, VRS, PRI, VAS and BRS-6 were evaluated at the baseline and after each treatment phase. There was no statistically significant difference in age, history of dysmenorrhea, length of menstrual cycle, age at menarche, duration of menstrual flow, PRI score, VAS score, BRS score and RSS score between Group A and Group B (p>0.05). After the first treatment phase, the score of BRS-6 has significant differences between two groups at the first menstrual cycle (p<0.05). At the second menstrual cycle, the score of VAS, BRS-6,sensory of PRI, affective dimension of PR and total score of PRI in Group A were much lower than Group B (p<0.05). NRS and VRS had significant differences between two groups with Wilcoxon Mann-Whitney test after the first treatment phase (p<0.05). The frequency rating of weakness, loss of appetite, diarrhea, and the total score had significant differences between two groups at the first menstrual cycle (p<0.05). And the frequency rating of weakness, backache, facial blemishes, loss of appetite, diarrhea, and the total score had significant differences between two groups at the second menstrual cycle (p<0.05). The severity rating of backaches, loss of appetite, sleeplessness, and the total score had significant differences between two groups after the second menstrual cycle (p<0.05). After three months' wash period, the score of VAS, BRS-6, sensory of PRI, affective of PR, total score of PRI and VRS had significant differences between two groups after the second treatment phase (p<0.01). And the frequency rating of leg aches, dizziness, nervousness and the total score had significant differences between two groups after the second treatment phase (p<0.05). And the severity rating of abdominal pain, weakness, leg aches, dizziness, nervousness and the total score had significant differences between two groups after the second treatment phase (p<0.05). The results suggested that moxibustion therapy with a heating box was effective for alleviating menstrual pain and symptoms of young female university students in China. The effect of moxibustion might not only due to heat stimulation, but also from the burning of moxa stick. Boxing moxibustion could be recommended as a nonpharmacological pain relief intervention for university students for its cost effectiveness, practical design and relative safety, and it is easy for the university students themselves to self-administer at home. Copyright © 2015 Elsevier Ltd. All rights reserved.

Technical note: Application of the Box-Cox data transformation to animal science experiments.

PubMed

Peltier, M R; Wilcox, C J; Sharp, D C

1998-03-01

In the use of ANOVA for hypothesis testing in animal science experiments, the assumption of homogeneity of errors often is violated because of scale effects and the nature of the measurements. We demonstrate a method for transforming data so that the assumptions of ANOVA are met (or violated to a lesser degree) and apply it in analysis of data from a physiology experiment. Our study examined whether melatonin implantation would affect progesterone secretion in cycling pony mares. Overall treatment variances were greater in the melatonin-treated group, and several common transformation procedures failed. Application of the Box-Cox transformation algorithm reduced the heterogeneity of error and permitted the assumption of equal variance to be met.

Agrometeorological models for forecasting the qualitative attributes of "Valência" oranges

NASA Astrophysics Data System (ADS)

Moreto, Victor Brunini; Rolim, Glauco de Souza; Zacarin, Bruno Gustavo; Vanin, Ana Paula; de Souza, Leone Maia; Latado, Rodrigo Rocha

2017-11-01

Forecasting is the act of predicting unknown future events using available data. Estimating, in contrast, uses data to simulate an actual condition. Brazil is the world's largest producer of oranges, and the state of São Paulo is the largest producer in Brazil. The "Valência" orange is among the most common cultivars in the state. We analyzed the influence of monthly meteorological variables during the growth cycle of Valência oranges grafted onto "Rangpur" lime rootstocks (VACR) for São Paulo, and developed monthly agrometeorological models for forecasting the qualitative attributes of VACR in mature orchard. For fruits per box for all months, the best accuracy was of 0.84 % and the minimum forecast range of 4 months. For the relation between °brix and juice acidity (RATIO) the best accuracy was of 0.69 % and the minimum forecast range of 5 months. Minimum, mean and maximum air temperatures, and relative evapotranspiration were the most important variables in the models.

Simple Deterministically Constructed Recurrent Neural Networks

NASA Astrophysics Data System (ADS)

Rodan, Ali; Tiňo, Peter

A large number of models for time series processing, forecasting or modeling follows a state-space formulation. Models in the specific class of state-space approaches, referred to as Reservoir Computing, fix their state-transition function. The state space with the associated state transition structure forms a reservoir, which is supposed to be sufficiently complex so as to capture a large number of features of the input stream that can be potentially exploited by the reservoir-to-output readout mapping. The largely "black box" character of reservoirs prevents us from performing a deeper theoretical investigation of the dynamical properties of successful reservoirs. Reservoir construction is largely driven by a series of (more-or-less) ad-hoc randomized model building stages, with both the researchers and practitioners having to rely on a series of trials and errors. We show that a very simple deterministically constructed reservoir with simple cycle topology gives performances comparable to those of the Echo State Network (ESN) on a number of time series benchmarks. Moreover, we argue that the memory capacity of such a model can be made arbitrarily close to the proved theoretical limit.

Interactions between marine biota and ENSO: a conceptual model analysis

NASA Astrophysics Data System (ADS)

Heinemann, M.; Timmermann, A.; Feudel, U.

2011-01-01

We develop a conceptual coupled atmosphere-ocean-ecosystem model for the tropical Pacific to investigate the interaction between marine biota and the El Niño-Southern Oscillation (ENSO). Ocean and atmosphere are represented by a two-box model for the equatorial Pacific cold tongue and the warm pool, including a simplified mixed layer scheme. Marine biota are represented by a three-component (nutrient, phytoplankton, and zooplankton) ecosystem model. The atmosphere-ocean model exhibits an oscillatory state which qualitatively captures the main physics of ENSO. During an ENSO cycle, the variation of nutrient upwelling, and, to a small extent, the variation of photosynthetically available radiation force an ecosystem oscillation. The simplified ecosystem in turn, due to the effect of phytoplankton on the absorption of shortwave radiation in the water column, leads to (1) a warming of the tropical Pacific, (2) a reduction of the ENSO amplitude, and (3) a prolongation of the ENSO period. We qualitatively investigate these bio-physical coupling mechanisms using continuation methods. It is demonstrated that bio-physical coupling may play a considerable role in modulating ENSO variability.

Antiapoptotic Effect of Recombinant HMGB1 A-box Protein via Regulation of microRNA-21 in Myocardial Ischemia-Reperfusion Injury Model in Rats.

PubMed

Han, Qiang; Zhang, Hua-Yong; Zhong, Bei-Long; Zhang, Bing; Chen, Hua

2016-04-01

The ~80 amino acid A box DNA-binding domain of high mobility group box 1 (HMGB1) protein antagonizes proinflammatory responses during myocardial ischemia reperfusion (I/R) injury. The exact role of microRNA-21 (miR-21) is unknown, but its altered levels are evident in I/R injury. This study examined the roles of HMGB1 A-box and miR-21 in rat myocardial I/R injury model. Sixty Sprague-Dawley rats were randomly divided into six equal groups: (1) Sham; (2) I/R; (3) Ischemic postconditioning (IPost); (4) AntagomiR-21 post-treatment; (5) Recombinant HMGB1 A-box pretreatment; and (6) Recombinant HMGB1 A-box + antagomiR-21 post-treatment. Hemodynamic indexes, arrhythmia scores, ischemic area and infarct size, myocardial injury, and related parameters were studied. Expression of miR-21 was detected by real-time quantitative polymerase chain reaction (qRT-PCR) and terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay was used to quantify apoptosis. Left ventricular systolic pressure (LVSP), left ventricular end diastolic pressure (LVEDP), maximal rate of pressure rise (+dp/dtmax), and decline (-dp/dtmax) showed clear reduction upon treatment with recombinant HMGB1 A-box. Arrhythmia was relieved and infarct area decreased in the group pretreated with recombinant HMGB1 A-box, compared with other groups. Circulating lactate dehydrogenase (LDH) and malondialdehyde (MDA) levels increased in response to irreversible cellular injury, while creatine kinase MB isoenzymes (CK-MB) and superoxide dismutase (SOD) activities were reduced in the I/R group, which was reversed following recombinant HMGB1 A-box treatment. Interestingly, pretreatment with recombinant HMGB1 A-box showed the most dramatic reductions in miR-21 levels, compared with other groups. Significantly reduced apoptotic index (AI) was seen in recombinant HMGB1 A-box pretreatment group and recombinant HMGB1 A-box + antagomiR-21 post-treatment group, with the former showing a more dramatic lowering in AI than the latter. Bax, caspase-8, and CHOP showed reduced expression, and Bcl-2 and p-AKT levels were upregulated in recombinant HMGB1 A-box pretreatment group. Thus, recombinant HMGB1 A-box treatment protects against I/R injury and the mechanisms may involve inhibition of miR-21 expression.

Smocks and Jocks outside the Box: The Paradigmatic Evolution of Sport and Exercise Psychology

ERIC Educational Resources Information Center

Vealey, Robin S.

2006-01-01

The objective of this article is to describe the historical development of sport and exercise psychology, with a particular emphasis on the construction and evolution of the "box" through history. The box represents the dominant paradigm that serves as the model for research and application as it evolves through successive historical eras (Kuhn,…

Finding External Indicators of Load on a Web Server via Analysis of Black-Box Performance Measurements

ERIC Educational Resources Information Center

Chiarini, Marc A.

2010-01-01

Traditional methods for system performance analysis have long relied on a mix of queuing theory, detailed system knowledge, intuition, and trial-and-error. These approaches often require construction of incomplete gray-box models that can be costly to build and difficult to scale or generalize. In this thesis, we present a black-box analysis…

Structural Basis for Conserved Regulation and Adaptation of the Signal Recognition Particle Targeting Complex.

PubMed

Wild, Klemens; Bange, Gert; Motiejunas, Domantas; Kribelbauer, Judith; Hendricks, Astrid; Segnitz, Bernd; Wade, Rebecca C; Sinning, Irmgard

2016-07-17

The signal recognition particle (SRP) is a ribonucleoprotein complex with a key role in targeting and insertion of membrane proteins. The two SRP GTPases, SRP54 (Ffh in bacteria) and FtsY (SRα in eukaryotes), form the core of the targeting complex (TC) regulating the SRP cycle. The architecture of the TC and its stimulation by RNA has been described for the bacterial SRP system while this information is lacking for other domains of life. Here, we present the crystal structures of the GTPase heterodimers of archaeal (Sulfolobus solfataricus), eukaryotic (Homo sapiens), and chloroplast (Arabidopsis thaliana) SRP systems. The comprehensive structural comparison combined with Brownian dynamics simulations of TC formation allows for the description of the general blueprint and of specific adaptations of the quasi-symmetric heterodimer. Our work defines conserved external nucleotide-binding sites for SRP GTPase activation by RNA. Structural analyses of the GDP-bound, post-hydrolysis states reveal a conserved, magnesium-sensitive switch within the I-box. Overall, we provide a general model for SRP cycle regulation by RNA. Copyright © 2016 Elsevier Ltd. All rights reserved.

Flexible mixture modeling via the multivariate t distribution with the Box-Cox transformation: an alternative to the skew-t distribution

PubMed Central

Lo, Kenneth

2011-01-01

Cluster analysis is the automated search for groups of homogeneous observations in a data set. A popular modeling approach for clustering is based on finite normal mixture models, which assume that each cluster is modeled as a multivariate normal distribution. However, the normality assumption that each component is symmetric is often unrealistic. Furthermore, normal mixture models are not robust against outliers; they often require extra components for modeling outliers and/or give a poor representation of the data. To address these issues, we propose a new class of distributions, multivariate t distributions with the Box-Cox transformation, for mixture modeling. This class of distributions generalizes the normal distribution with the more heavy-tailed t distribution, and introduces skewness via the Box-Cox transformation. As a result, this provides a unified framework to simultaneously handle outlier identification and data transformation, two interrelated issues. We describe an Expectation-Maximization algorithm for parameter estimation along with transformation selection. We demonstrate the proposed methodology with three real data sets and simulation studies. Compared with a wealth of approaches including the skew-t mixture model, the proposed t mixture model with the Box-Cox transformation performs favorably in terms of accuracy in the assignment of observations, robustness against model misspecification, and selection of the number of components. PMID:22125375

Flexible mixture modeling via the multivariate t distribution with the Box-Cox transformation: an alternative to the skew-t distribution.

PubMed

Lo, Kenneth; Gottardo, Raphael

2012-01-01

Cluster analysis is the automated search for groups of homogeneous observations in a data set. A popular modeling approach for clustering is based on finite normal mixture models, which assume that each cluster is modeled as a multivariate normal distribution. However, the normality assumption that each component is symmetric is often unrealistic. Furthermore, normal mixture models are not robust against outliers; they often require extra components for modeling outliers and/or give a poor representation of the data. To address these issues, we propose a new class of distributions, multivariate t distributions with the Box-Cox transformation, for mixture modeling. This class of distributions generalizes the normal distribution with the more heavy-tailed t distribution, and introduces skewness via the Box-Cox transformation. As a result, this provides a unified framework to simultaneously handle outlier identification and data transformation, two interrelated issues. We describe an Expectation-Maximization algorithm for parameter estimation along with transformation selection. We demonstrate the proposed methodology with three real data sets and simulation studies. Compared with a wealth of approaches including the skew-t mixture model, the proposed t mixture model with the Box-Cox transformation performs favorably in terms of accuracy in the assignment of observations, robustness against model misspecification, and selection of the number of components.

Evolution of the F-Box Gene Family in Euarchontoglires: Gene Number Variation and Selection Patterns

PubMed Central

Wang, Ailan; Fu, Mingchuan; Jiang, Xiaoqian; Mao, Yuanhui; Li, Xiangchen; Tao, Shiheng

2014-01-01

F-box proteins are substrate adaptors used by the SKP1–CUL1–F-box protein (SCF) complex, a type of E3 ubiquitin ligase complex in the ubiquitin proteasome system (UPS). SCF-mediated ubiquitylation regulates proteolysis of hundreds of cellular proteins involved in key signaling and disease systems. However, our knowledge of the evolution of the F-box gene family in Euarchontoglires is limited. In the present study, 559 F-box genes and nine related pseudogenes were identified in eight genomes. Lineage-specific gene gain and loss events occurred during the evolution of Euarchontoglires, resulting in varying F-box gene numbers ranging from 66 to 81 among the eight species. Both tandem duplication and retrotransposition were found to have contributed to the increase of F-box gene number, whereas mutation in the F-box domain was the main mechanism responsible for reduction in the number of F-box genes, resulting in a balance of expansion and contraction in the F-box gene family. Thus, the Euarchontoglire F-box gene family evolved under a birth-and-death model. Signatures of positive selection were detected in substrate-recognizing domains of multiple F-box proteins, and adaptive changes played a role in evolution of the Euarchontoglire F-box gene family. In addition, single nucleotide polymorphism (SNP) distributions were found to be highly non-random among different regions of F-box genes in 1092 human individuals, with domain regions having a significantly lower number of non-synonymous SNPs. PMID:24727786

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mueller, Juliane

MISO is an optimization framework for solving computationally expensive mixed-integer, black-box, global optimization problems. MISO uses surrogate models to approximate the computationally expensive objective function. Hence, derivative information, which is generally unavailable for black-box simulation objective functions, is not needed. MISO allows the user to choose the initial experimental design strategy, the type of surrogate model, and the sampling strategy.

Why the Particle-in-a-Box Model Works Well for Cyanine Dyes but Not for Conjugated Polyenes

ERIC Educational Resources Information Center

Autschbach, Jochen

2007-01-01

We investigate why the particle-in-a-box (PB) model works well for calculating the absorption wavelengths of cyanine dyes and why it does not work for conjugated polyenes. The PB model is immensely useful in the classroom, but owing to its highly approximate character there is little reason to expect that it can yield quantitative agreement with…

Proceedings of the Third International Workshop on Multistrategy Learning, May 23-25 Harpers Ferry, WV.

DTIC Science & Technology

1996-09-16

approaches are: • Adaptive filtering • Single exponential smoothing (Brown, 1963) * The Box-Jenkins methodology ( ARIMA modeling ) - Linear exponential... ARIMA • Linear exponential smoothing: Holt’s two parameter modeling (Box and Jenkins, 1976). However, there are two approach (Holt et al., 1960) very...crucial disadvantages: The most important point in - Winters’ three parameter method (Winters, 1960) ARIMA modeling is model identification. As shown in

The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components

PubMed Central

García-Cruz, Karla V.; García-Ponce, Berenice; Garay-Arroyo, Adriana; Sanchez, María De La Paz; Ugartechea-Chirino, Yamel; Desvoyes, Bénédicte; Pacheco-Escobedo, Mario A.; Tapia-López, Rosalinda; Ransom-Rodríguez, Ivan; Gutierrez, Crisanto; Alvarez-Buylla, Elena R.

2016-01-01

Background Morphogenesis depends on the concerted modulation of cell proliferation and differentiation. Such modulation is dynamically adjusted in response to various external and internal signals via complex transcriptional regulatory networks that mediate between such signals and regulation of cell-cycle and cellular responses (proliferation, growth, differentiation). In plants, which are sessile, the proliferation/differentiation balance is plastically adjusted during their life cycle and transcriptional networks are important in this process. MADS-box genes are key developmental regulators in eukaryotes, but their role in cell proliferation and differentiation modulation in plants remains poorly studied. Methods We characterize the XAL1 loss-of-function xal1-2 allele and overexpression lines using quantitative cellular and cytometry analyses to explore its role in cell cycle, proliferation, stem-cell patterning and transition to differentiation. We used quantitative PCR and cellular markers to explore if XAL1 regulates cell-cycle components and PLETHORA1 (PLT1) gene expression, as well as confocal microscopy to analyse stem-cell niche organization. Key Results We previously showed that XAANTAL1 (XAL1/AGL12) is necessary for Arabidopsis root development as a promoter of cell proliferation in the root apical meristem. Here, we demonstrate that XAL1 positively regulates the expression of PLT1 and important components of the cell cycle: CYCD3;1, CYCA2;3, CYCB1;1, CDKB1;1 and CDT1a. In addition, we show that xal1-2 mutant plants have a premature transition to differentiation with root hairs appearing closer to the root tip, while endoreplication in these plants is partially compromised. Coincidently, the final size of cortex cells in the mutant is shorter than wild-type cells. Finally, XAL1 overexpression-lines corroborate that this transcription factor is able to promote cell proliferation at the stem-cell niche. Conclusion XAL1 seems to be an important component of the networks that modulate cell proliferation/differentiation transition and stem-cell proliferation during Arabidopsis root development; it also regulates several cell-cycle components. PMID:27474508

The ecological virus.

PubMed

O'Malley, Maureen A

2016-10-01

Ecology is usually described as the study of organisms interacting with one another and their environments. From this view of ecology, viruses - not usually considered to be organisms - would merely be part of the environment. Since the late 1980s, however, a growing stream of micrographic, experimental, molecular, and model-based (theoretical) research has been investigating how and why viruses should be understood as ecological actors of the most important sort. Viruses, especially phage, have been revealed as participants in the planet's most crucial food webs, even though viruses technically consume nothing (they do not metabolize by themselves). Even more impressively, viruses have been identified as regulators of planetary biogeochemistry, in which they control cycles such as carbon, nitrogen and phosphorus - cycles on which all life depends. Although much biogeochemical research black-boxes the entities filling functional roles, it is useful to focus a little more closely to understand how viruses can be held responsible for the global processes of life. This paper will give a brief overview of the history of virus ecology and tease out the implications of large-scale ecological modelling with viruses. This analysis suggests that viruses should be conceptualized as ecological actors that are at least comparable and possibly equal to organismal actors. Ecological agency can therefore be distinguished from standard interpretations of biological agency. Copyright © 2016 Elsevier Ltd. All rights reserved.

Glacioeustasy, meteoric diagenesis, and the carbon cycle during the Middle Carboniferous

NASA Astrophysics Data System (ADS)

Dyer, Blake; Maloof, Adam C.; Higgins, John A.

2015-10-01

Middle Carboniferous carbonates in the western U.S. have undergone Pleistocene Bahamas-style meteoric diagenesis that may be associated with expanding late Paleozoic ice sheets. Fourteen stratigraphic sections from carbonate platforms illustrate the regional distribution and variable intensity of physical and chemical diagenesis just below the Middle Carboniferous unconformity. These sections contain top-negative carbon isotope excursions that terminate in regional exposure surfaces that are associated with some combination of karst towers, desiccation cracks, fabric destructive recrystallization, or extensive root systems. The timing of the diagenesis is synchronous with similarly scaled top-negative carbon isotope excursions observed by others in England, Kazakhstan, and China. The mass flux of negative carbon required to generate similar isotopic profiles across the areal extent of Middle Carboniferous platform carbonates is a significant component of the global carbon cycle. We present a simple carbon box model to illustrate that the δ13C of dissolved inorganic carbon in the ocean could be elevated by ˜1.4‰ as isotopically light carbon from the weathering of terrestrial organic matter reacts with exposed platforms before reaching the ocean and atmosphere. These results represent an improvement on global biogeochemical models that have struggled to provide a congruent solution to the high δ13C of the late Paleozoic icehouse.

Off-diagonal long-range order, cycle probabilities, and condensate fraction in the ideal Bose gas.

PubMed

Chevallier, Maguelonne; Krauth, Werner

2007-11-01

We discuss the relationship between the cycle probabilities in the path-integral representation of the ideal Bose gas, off-diagonal long-range order, and Bose-Einstein condensation. Starting from the Landsberg recursion relation for the canonic partition function, we use elementary considerations to show that in a box of size L3 the sum of the cycle probabilities of length k>L2 equals the off-diagonal long-range order parameter in the thermodynamic limit. For arbitrary systems of ideal bosons, the integer derivative of the cycle probabilities is related to the probability of condensing k bosons. We use this relation to derive the precise form of the pik in the thermodynamic limit. We also determine the function pik for arbitrary systems. Furthermore, we use the cycle probabilities to compute the probability distribution of the maximum-length cycles both at T=0, where the ideal Bose gas reduces to the study of random permutations, and at finite temperature. We close with comments on the cycle probabilities in interacting Bose gases.

Ecology and Economics of Using Native Managed Bees for Almond Pollination.

PubMed

Koh, Insu; Lonsdorf, Eric V; Artz, Derek R; Pitts-Singer, Theresa L; Ricketts, Taylor H

2018-02-09

Native managed bees can improve crop pollination, but a general framework for evaluating the associated economic costs and benefits has not been developed. We conducted a cost-benefit analysis to assess how managing blue orchard bees (Osmia lignaria Say [Hymenoptera: Megachildae]) alongside honey bees (Apis mellifera Linnaeus [Hymenoptera: Apidae]) can affect profits for almond growers in California. Specifically, we studied how adjusting three strategies can influence profits: (1) number of released O. lignaria bees, (2) density of artificial nest boxes, and (3) number of nest cavities (tubes) per box. We developed an ecological model for the effects of pollinator activity on almond yields, validated the model with published data, and then estimated changes in profits for different management strategies. Our model shows that almond yields increase with O. lignaria foraging density, even where honey bees are already in use. Our cost-benefit analysis shows that profit ranged from -US$1,800 to US$2,800/acre given different combinations of the three strategies. Adding nest boxes had the greatest effect; we predict an increase in profit between low and high nest box density strategies (2.5 and 10 boxes/acre). In fact, the number of released bees and the availability of nest tubes had relatively small effects in the high nest box density strategies. This suggests that growers could improve profits by simply adding more nest boxes with moderate number of tubes in each. Our approach can support grower decisions regarding integrated crop pollination and highlight the importance of a comprehensive ecological economic framework for assessing these decisions. © The Author(s) 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Ancestral and more recently acquired syntenic relationships of MADS-box genes uncovered by the Physcomitrella patens pseudochromosomal genome assembly.

PubMed

Barker, Elizabeth I; Ashton, Neil W

2016-03-01

The Physcomitrella pseudochromosomal genome assembly revealed previously invisible synteny enabling realisation of the full potential of shared synteny as a tool for probing evolution of this plant's MADS-box gene family. Assembly of the sequenced genome of Physcomitrella patens into 27 mega-scaffolds (pseudochromosomes) has confirmed the major predictions of our earlier model of expansion of the MADS-box gene family in the Physcomitrella lineage. Additionally, microsynteny has been conserved in the immediate vicinity of some recent duplicates of MADS-box genes. However, comparison of non-syntenic MIKC MADS-box genes and neighbouring genes indicates that chromosomal rearrangements and/or sequence degeneration have destroyed shared synteny over longer distances (macrosynteny) around MADS-box genes despite subsets comprising two or three MIKC genes having remained syntenic. In contrast, half of the type I MADS-box genes have been transposed creating new syntenic relations with MIKC genes. This implies that conservation of ancient ancestral synteny of MIKC genes and of more recently acquired synteny of type I and MIKC genes may be selectively advantageous. Our revised model predicts the birth rate of MIKC genes in Physcomitrella is higher than that of type I genes. However, this difference is attributable to an early tandem duplication and an early segmental duplication of MIKC genes prior to the two polyploidisations that account for most of the expansion of the MADS-box gene family in Physcomitrella. Furthermore, this early segmental duplication spawned two chromosomal lineages: one with a MIKC (C) gene, belonging to the PPM2 clade, in close proximity to one or a pair of MIKC* genes and another with a MIKC (C) gene, belonging to the PpMADS-S clade, characterised by greater separation from syntenic MIKC* genes. Our model has evolutionary implications for the Physcomitrella karyotype.

A Simple and Low-Cost Procedure for Growing Geobacter sulfurreducens Cell Cultures and Biofilms in Bioelectrochemical Systems

PubMed Central

O’Brien, J. Patrick; Malvankar, Nikhil S.

2017-01-01

Anaerobic microorganisms play a central role in several environmental processes and regulate global biogeochemical cycling of nutrients and minerals. Many anaerobic microorganisms are important for the production of bioenergy and biofuels. However, the major hurdle in studying anaerobic microorganisms in the laboratory is the requirement for sophisticated and expensive gassing stations and glove boxes to create and maintain the anaerobic environment. This appendix presents a simple design for a gassing station that can be used readily by an inexperienced investigator for cultivation of anaerobic microorganisms. In addition, this appendix also details the low-cost assembly of bioelectrochemical systems and outlines a simplified procedure for cultivating and analyzing bacterial cell cultures and biofilms that produce electric current, using Geobacter sulfurreducens as a model organism. PMID:27858972

On variable hydrostatic transmission for road vehicles, powered by supply of fluid at constant pressure

NASA Technical Reports Server (NTRS)

Magi, M.; Freivald, A.; Andersson, I.; Ericsson, U.

1981-01-01

Various hydrostatic power transmission systems for automotive applications with power supply at constant pressure and unrestricted flow and with a Volvo Flygmotor variable displacement motor as the principal unit were investigated. Two most promising concepts were analyzed in detail and their main components optimized for minimum power loss at the EPA Urban Driving Cycle. The best fuel consumption is less than 10 lit. per 100 kM for a 1542 kG vehicle with a hydrostatic motor and a two speed gear box in series (braking power not recovered). Realistic system pressure affects the fuel consumption just slightly, but the package volume/weight drastically. Back pressure increases losses significantly. Special attention was paid to description of the behavior and modeling of the losses of variable displacement hydrostatic machines.

Genome-wide analysis of the SBP-box gene family in Chinese cabbage (Brassica rapa subsp. pekinensis).

PubMed

Tan, Hua-Wei; Song, Xiao-Ming; Duan, Wei-Ke; Wang, Yan; Hou, Xi-Lin

2015-11-01

The SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-box gene family contains highly conserved plant-specific transcription factors that play an important role in plant development, especially in flowering. Chinese cabbage (Brassica rapa subsp. pekinensis) is a leafy vegetable grown worldwide and is used as a model crop for research in genome duplication. The present study aimed to characterize the SBP-box transcription factor genes in Chinese cabbage. Twenty-nine SBP-box genes were identified in the Chinese cabbage genome and classified into six groups. We identified 23 orthologous and 5 co-orthologous SBP-box gene pairs between Chinese cabbage and Arabidopsis. An interaction network among these genes was constructed. Sixteen SBP-box genes were expressed more abundantly in flowers than in other tissues, suggesting their involvement in flowering. We show that the MiR156/157 family members may regulate the coding regions or 3'-UTR regions of Chinese cabbage SBP-box genes. As SBP-box genes were found to potentially participate in some plant development pathways, quantitative real-time PCR analysis was performed and showed that Chinese cabbage SBP-box genes were also sensitive to the exogenous hormones methyl jasmonic acid and salicylic acid. The SBP-box genes have undergone gene duplication and loss, evolving a more refined regulation for diverse stimulation in plant tissues. Our comprehensive genome-wide analysis provides insights into the SBP-box gene family of Chinese cabbage.

"Light-box" accelerated growth of poinsettias: LED-only illumination

NASA Astrophysics Data System (ADS)

Weerasuriya, Charitha; Detez, Stewart; Hock Ng, Soon; Hughes, Andrew; Callaway, Michael; Harrison, Iain; Katkus, Tomas; Juodkazis, Saulius

2018-01-01

For the current commercialized agricultural industry which requires a reduced product lead time to customer and supply all year round, an artificial light emitting diodes (LEDs)-based illumination has high potential due to high efficiency of electrical-to-light conversion. The main advantage of the deployed Red Green Blue Amber LED lighting system is colour mixing capability, which means ability to generate all the colours in the spectrum by using three or four primary colours LEDs. The accelerated plant growth was carried out in a "light-box" which was made to generate an artificial day/night cycle by moving the colour mixing ratio along the colour temperature curve of the chromaticity diagram. The control group of plants form the same initial batch was grown on the same shelf in a greenhouse at the same conditions with addition of artificial illumination by incandescent lamps for few hours. Costs and efficiency projections of LED lamps for horticultural applications is discussed together with required capital investment. The total cost of the "light-box" including LED lamps and electronics was 850 AUD.

Teaching Outside the Box: How to Grab Your Students by Their Brains, 2nd Edition

ERIC Educational Resources Information Center

Johnson, LouAnne

2011-01-01

This second edition of the bestselling book includes practical suggestions for arranging your classroom, talking to students, avoiding the misbehavior cycle, and making your school a place where students learn and teachers teach. The book also contains enlivening Q&A from teachers, letters from students, and tips for grading. This new edition has…

Thermogenic methane release as a cause for the long duration of the PETM

PubMed Central

Frieling, Joost; Svensen, Henrik H.; Planke, Sverre; Cramwinckel, Margot J.; Selnes, Haavard; Sluijs, Appy

2016-01-01

The Paleocene–Eocene Thermal Maximum (PETM) (∼56 Ma) was a ∼170,000-y (∼170-kyr) period of global warming associated with rapid and massive injections of 13C-depleted carbon into the ocean–atmosphere system, reflected in sedimentary components as a negative carbon isotope excursion (CIE). Carbon cycle modeling has indicated that the shape and magnitude of this CIE are generally explained by a large and rapid initial pulse, followed by ∼50 kyr of 13C-depleted carbon injection. Suggested sources include submarine methane hydrates, terrigenous organic matter, and thermogenic methane and CO2 from hydrothermal vent complexes. Here, we test for the contribution of carbon release associated with volcanic intrusions in the North Atlantic Igneous Province. We use dinoflagellate cyst and stable carbon isotope stratigraphy to date the active phase of a hydrothermal vent system and find it to postdate massive carbon release at the onset of the PETM. Crucially, however, it correlates to the period within the PETM of longer-term 13C-depleted carbon release. This finding represents actual proof of PETM carbon release from a particular reservoir. Based on carbon cycle box model [i.e., Long-Term Ocean–Atmosphere–Sediment Carbon Cycle Reservoir (LOSCAR) model] experiments, we show that 4–12 pulses of carbon input from vent systems over 60 kyr with a total mass of 1,500 Pg of C, consistent with the vent literature, match the shape of the CIE and pattern of deep ocean carbonate dissolution as recorded in sediment records. We therefore conclude that CH4 from the Norwegian Sea vent complexes was likely the main source of carbon during the PETM, following its dramatic onset. PMID:27790990

Solution structure of the antitermination protein NusB of Escherichia coli: a novel all-helical fold for an RNA-binding protein.

PubMed Central

Huenges, M; Rölz, C; Gschwind, R; Peteranderl, R; Berglechner, F; Richter, G; Bacher, A; Kessler, H; Gemmecker, G

1998-01-01

The NusB protein of Escherichia coli is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. In cooperation with several other proteins, it binds to a dodecamer motif designated rrn boxA on the nascent rRNA. The antitermination proteins of E.coli are recruited in the replication cycle of bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle. Multidimensional heteronuclear NMR experiments were performed with recombinant NusB protein labelled with 13C, 15N and 2H. The three-dimensional structure of the protein was solved from 1926 NMR-derived distances and 80 torsion angle restraints. The protein folds into an alpha/alpha-helical topology consisting of six helices; the arginine-rich N-terminus appears to be disordered. Complexation of the protein with an RNA dodecamer equivalent to the rrn boxA site results in chemical shift changes of numerous amide signals. The overall packing of the protein appears to be conserved, but the flexible N-terminus adopts a more rigid structure upon RNA binding, indicating that the N-terminus functions as an arginine-rich RNA-binding motif (ARM). PMID:9670024

Box/peanut and bar structures in edge-on and face-on nearby galaxies in the Sloan Digital Sky Survey - I. Catalogue

NASA Astrophysics Data System (ADS)

Yoshino, Akira; Yamauchi, Chisato

2015-02-01

We investigate box/peanut and bar structures in image data of edge-on and face-on nearby galaxies taken from the Sloan Digital Sky Survey (SDSS) to present catalogues containing the surface brightness parameters and the morphology classification. About 1700 edge-on galaxies and 2600 face-on galaxies are selected from SDSS DR7 in the g, r and i-bands. The images of each galaxy are fitted with the model of two-dimensional surface brightness of the Sérsic bulge and exponential disk. After removing some irregular data, the box/peanut, bar and other structures are easily distinguished by eye using residual (observed minus model) images. We find 292 box/peanut structures in the 1329 edge-on samples and 630 bar structures in 1890 face-on samples in the i-band, after removing some irregular data. The fraction of box/peanut galaxies is about 22 per cent against the edge-on samples, and that of bar galaxies is about 33 per cent (about 50 per cent if 629 elliptical galaxies are removed) against the face-on samples. Furthermore the strengths of the box/peanuts and bars are evaluated as strong, standard or weak. We find that the strength increases slightly with increasing B/T (bulge-to-total flux ratio), and that the fraction of box/peanuts is generally about a half of that of bars, irrespective of the strength and B/T. Our result supports the idea that a box/peanut is a bar seen edge-on.

Seasonal cycle of the Canary Current.

NASA Astrophysics Data System (ADS)

Vélez-Belchí, P.; Hernandez-Guerra, A.; Pérez-Hernández, M. D.

2015-12-01

The Atlantic meridional overturning circulation (AMOC) is recognized as an important component of the climate system, contributing to the relatively mild climate of northwest Europe. Due to its importance, the strength of the AMOC is continually monitored along 26ºN with several moorings east of the Bahamas, in the Middle Atlantic Ridge and south of the Canary islands, known as the RAPID array. The measurements of the RAPID array show a 6 Sv seasonal cycle for the AMOC, and recent studies have pointed out the dynamics of the eastern Atlantic as the main driver for this seasonal cycle, specifically, rossby waves excited south of the Canary Islands. Due to the important role of the eastern Atlantic, in this study we describe the seasonal cycle of the Canary Current (CC) and the Canary Upwelling Current (CUC) using hydrographic data from two cruises carried out in a box around the Canary Islands, the region where the eastern component of the RAPID array is placed. CTD, VMADCP and LADCP data were combined with inverse modeling in order to determine absolute geostrophic transports in the Canary Islands region in fall and spring. During spring, the overall transport of Canary Current and the CUC was southward. In the Lanzarote Passage (LP), between the Canary Islands and Africa, the CUC transported 0.6±0.20 Sv southward, while the Canary Current transported 1.0±0.40 Sv in the oceanic waters of the Canary Islands Archipelago. During fall, the CUC transported 2.8±0.4Sv northward, while the CC transported 2.9±0.60 Sv southward in the oceanic waters of the Canary Islands Archipelago. The seasonal cycle observed has an amplitude of 3.4Sv for the CUC and 1.9Sv for the CC. Data from a mooring in the LP and the hydrographic data was used to calibrate geostrophic transport estimated using altimetry data. The amplitude of the seasonal cycle of the geostrophic transport obtained using the calibrated altimetry data (Figure 1) was quite similar to the seasonal cycle of the Eastern Atlantic contribution to the AMOC, as measured by the RAPID array. To understand the relationship between the seasonal cycle found in the CC and CUC, and the amplitude of the seasonal cycle of the AMOC transport associated with Rossby waves, a sensitivity study of the Rossby wave model is included.

A Model-based Interpretation of Low-frequency Changes in the Carbon Cycle during the Last 120,000 years and its Implications for the Reconstruction of Atmospheric (delta) 14-C

NASA Technical Reports Server (NTRS)

Koehler, Peter; Muscheler, Raimund; Fischer, Hubertus

2006-01-01

A main caveat in the interpretation of observed changes in atmospheric (Delta)C-l4 during the last 50,000 years is the unknown variability of the carbon cycle, which together with changes in the C-14 production rates determines the C-14 dynamics. A plausible scenario explaining glacial/interglacial dynamics seen in atmospheric CO2 and (delta)C-13 was proposed recently (Kohler et al., 2005a). A similar approach that expands its interpretation to the C-14 cycle is an important step toward a deeper understanding of (Delta)C-14 variability. This approach is based on an ocean/atmosphere/biosphere box model of the global carbon cycle (BICYCLE) to reproduce low-frequency changes in atmospheric CO2 as seen in Antarctic ice cores. The model is forced forward in time by various paleoclimatic records derived from ice and sediment cores. The simulation results of our proposed scenario match a compiled CO2 record from various ice cores during the last 120,000 years with high accuracy (r(sup 2) = 0.89). We analyze scenarios with different C-14 production rates, which are either constant or based on Be-10 measured in Greenland ice cores or the recent high-resolution geomagnetic field reconstruction GLOPIS-75 and compare them with the available (Delta)C-14 data covering the last 50,000 years. Our results suggest that during the last glacial cycle in general less than 110%0o f the increased atmospheric (Delta)C-14 is based on variations in the carbon cycle, while the largest part (5/6) of the variations has to be explained by other factors. Glacial atmospheric (Delta)C-14 larger than 700% cannot not be explained within our framework, neither through carbon cycle-based changes nor through variable C-14 production. Superimposed on these general trends might lie positive anomalies in atmospheric (Delta)C-14 of approx. 50% caused by millennial-scale variability of the northern deep water production during Heinrich events and Dansgaard/Oeschger climate fluctuations. According to our model, the dominant processes that increase glacial (Delta)C-14 are a reduced glacial ocean circulation (+ approx.40%0), a restricted glacial gas exchange between the atmosphere and the surface ocean through sea ice coverage (+ approx. 20%), and the enrichment of dissolved inorganic carbon with C-14 in the surface waters through isotopic fractionation during higher glacial marine export production caused by iron fertilization (+ approx.10%).

Plant WEE1 kinase is cell cycle regulated and removed at mitosis via the 26S proteasome machinery

PubMed Central

Cook, Gemma S.; Grønlund, Anne Lentz; Siciliano, Ilario; Spadafora, Natasha; Amini, Maryam; Herbert, Robert J.; Bitonti, M. Beatrice; Graumann, Katja; Francis, Dennis; Rogers, Hilary J.

2013-01-01

In yeasts and animals, premature entry into mitosis is prevented by the inhibitory phosphorylation of cyclin-dependent kinase (CDK) by WEE1 kinase, and, at mitosis, WEE1 protein is removed through the action of the 26S proteasome. Although in higher plants WEE1 function has been confirmed in the DNA replication checkpoint, Arabidopsis wee1 insertion mutants grow normally, and a role for the protein in the G2/M transition during an unperturbed plant cell cycle is yet to be confirmed. Here data are presented showing that the inhibitory effect of WEE1 on CDK activity in tobacco BY-2 cell cultures is cell cycle regulated independently of the DNA replication checkpoint: it is high during S-phase but drops as cells traverse G2 and enter mitosis. To investigate this mechanism further, a yeast two-hybrid screen was undertaken to identify proteins interacting with Arabidopsis WEE1. Three F-box proteins and a subunit of the proteasome complex were identified, and bimolecular fluorescence complementation confirmed an interaction between AtWEE1 and the F-box protein SKP1 INTERACTING PARTNER 1 (SKIP1). Furthermore, the AtWEE1–green fluorescent protein (GFP) signal in Arabidopsis primary roots treated with the proteasome inhibitor MG132 was significantly increased compared with mock-treated controls. Expression of AtWEE1–YFPC (C-terminal portion of yellow fluorescent protein) or AtWEE1 per se in tobacco BY-2 cells resulted in a premature increase in the mitotic index compared with controls, whereas co-expression of AtSKIP1–YFPN negated this effect. These data support a role for WEE1 in a normal plant cell cycle and its removal at mitosis via the 26S proteasome. PMID:23536609

Environmental impact assessment and eco-friendly decision-making in civil structures.

PubMed

Kim, Sang-Hyo; Choi, Moon-Seock; Mha, Ho-Seong; Joung, Jung-Yeun

2013-09-15

This study develops two useful procedures in performing an environmental-impact assessment. One is the advanced life-cycle assessment (LCA) method, which effectively tracks the flow of materials and considers the recycling and demolition of a civil structure. The other is an eco-friendly decision-making procedure, which may effectively apply when determining the prototype of a civil structure. The advanced LCA method differs from traditional LCA procedure, as it classifies the input material prior to the impact assessment. Classification work is performed to establish independent life-cycle stages for each material. The processes of recycling and demolition are appropriately added to the life-cycle stages. The impact assessment is performed separately for the materials, and results are aggregated at the end of the analysis. The eco-friendly decision-making procedure enables designers to choose an economical, and environmentally friendly, alternative during the planning phase of the construction project. This procedure rationally amalgamates economical value and environmental effects into a single indicator. The life cycle cost (LCC) of a structure can be analysed by using conventional LCC tools, whereas the environmental impact is estimated by LCA. The results from LCC and LCA are then integrated by using either a CO2 conversion method or an analytical hierarchy process (AHP). The CO2 conversion method presents the result as a monetary value, whereas the AHP presents the result as a non-dimensional value. A practical example using a steel box girder bridge and a pre-stressed concrete (PSC) box-girder bridge is also given in order to aid the understanding of the presented procedure. Copyright © 2013 Elsevier Ltd. All rights reserved.

Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite's host adaptation machinery.

PubMed

Butter, Falk; Bucerius, Ferdinand; Michel, Margaux; Cicova, Zdenka; Mann, Matthias; Janzen, Christian J

2013-01-01

Trypanosoma brucei developed a sophisticated life cycle to adapt to different host environments. Although developmental differentiation of T. brucei has been the topic of intensive research for decades, the mechanisms responsible for adaptation to different host environments are not well understood. We developed stable isotope labeling by amino acids in cell culture in trypanosomes to compare the proteomes of two different life cycle stages. Quantitative comparison of 4364 protein groups identified many proteins previously not known to be stage-specifically expressed. The identification of stage-specific proteins helps to understand how parasites adapt to different hosts and provides new insights into differences in metabolism, gene regulation, and cell architecture. A DEAD-box RNA helicase, which is highly up-regulated in the bloodstream form of this parasite and which is essential for viability and proper cell cycle progression in this stage is described as an example.

Evaluating Anthropogenic Carbon Emissions in the Urban Salt Lake Valley through Inverse Modeling: Combining Long-term CO2 Observations and an Emission Inventory using a Multiple-box Atmospheric Model

NASA Astrophysics Data System (ADS)

Catharine, D.; Strong, C.; Lin, J. C.; Cherkaev, E.; Mitchell, L.; Stephens, B. B.; Ehleringer, J. R.

2016-12-01

The rising level of atmospheric carbon dioxide (CO2), driven by anthropogenic emissions, is the leading cause of enhanced radiative forcing. Increasing societal interest in reducing anthropogenic greenhouse gas emissions call for a computationally efficient method of evaluating anthropogenic CO2 source emissions, particularly if future mitigation actions are to be developed. A multiple-box atmospheric transport model was constructed in conjunction with a pre-existing fossil fuel CO2 emission inventory to estimate near-surface CO2 mole fractions and the associated anthropogenic CO2 emissions in the Salt Lake Valley (SLV) of northern Utah, a metropolitan area with a population of 1 million. A 15-year multi-site dataset of observed CO2 mole fractions is used in conjunction with the multiple-box model to develop an efficient method to constrain anthropogenic emissions through inverse modeling. Preliminary results of the multiple-box model CO2 inversion indicate that the pre-existing anthropogenic emission inventory may over-estimate CO2 emissions in the SLV. In addition, inversion results displaying a complex spatial and temporal distribution of urban emissions, including the effects of residential development and vehicular traffic will be discussed.

Spatial Pattern of Cell Damage in Tissue from Heavy Ions

NASA Technical Reports Server (NTRS)

Ponomarev, Artem L.; Huff, Janice L.; Cucinotta, Francis A.

2007-01-01

A new Monte Carlo algorithm was developed that can model passage of heavy ions in a tissue, and their action on the cellular matrix for 2- or 3-dimensional cases. The build-up of secondaries such as projectile fragments, target fragments, other light fragments, and delta-rays was simulated. Cells were modeled as a cell culture monolayer in one example, where the data were taken directly from microscopy (2-d cell matrix). A simple model of tissue was given as abstract spheres with close approximation to real cell geometries (3-d cell matrix), as well as a realistic model of tissue was proposed based on microscopy images. Image segmentation was used to identify cells in an irradiated cell culture monolayer, or slices of tissue. The cells were then inserted into the model box pixel by pixel. In the case of cell monolayers (2-d), the image size may exceed the modeled box size. Such image was is moved with respect to the box in order to sample as many cells as possible. In the case of the simple tissue (3-d), the tissue box is modeled with periodic boundary conditions, which extrapolate the technique to macroscopic volumes of tissue. For real tissue, specific spatial patterns for cell apoptosis and necrosis are expected. The cell patterns were modeled based on action cross sections for apoptosis and necrosis estimated based on BNL data, and other experimental data.

A new model of the Earth system nitrogen cycle: how plates and life affect the atmosphere

NASA Astrophysics Data System (ADS)

Johnson, B. W.; Goldblatt, C.

2017-12-01

Nitrogen is the main component of Earth's atmosphere. It plays a key role in the evolution of the biosphere and surface of Earth [1]. There are contrasting views, however, on how N has evolved on the surface of the Earth over time. Some modeling efforts [e.g., 2] indicate a steady-state level of N in the atmosphere over geologic time, while geochemical [e.g., 3], other proxies [e.g., 4], and more recent models [5] indicate the mass of N in the atmosphere can change dramatically over Earth history. This conundrum, and potential solutions to it, present distinct interpretations of the history of Earth, and teleconnections between the surface and interior of the planet have applications to other terrestrial bodies as well. To help investigate this conundrum, we have constructed an Earth-system N cycle box model. To our knowledge, this is the most capable model for addressing evolution of the N reservoirs of Earth through time. The model combines biologic and geologic processes, driven by a mantle cooling history, to more fully describe the N cycle through geologic history. In addition to a full biologic N cycle (fixing, nitrification, denitrification), we also dynamically solve for PO4 through time and we have a prescribed O2 history. Results indicate that the atmosphere of Earth could have experienced major changes in mass over geologic time. Importantly, the amount of N in the atmosphere today appears to be directly related to the total N budget of the silicate Earth. For example, high initial atmospheric mass, suggested as a solution to the Faint Young Sun Paradox [1], is drawn down over time. This supports work that indicates the mantle has significantly more N than the atmosphere does today [6]. Contrastingly, model runs with low total N result in a crash in atmospheric mass. In nearly all model runs the bulk silicate Earth contains the majority of the planet's N. [1] Goldblatt et al. (2009) Nat. Geosci., 2, 891-896. [2] Berner, R. (2006) Geology., 34, 413-415. [3] Barry, P.H. and Hilton (2016) Geochem. Persp. Letters, 2, 148-159. [4] Som, S.M. et al. (2016) Nat. Geosci., 9, 448-451. [5] Stueken et al. (2016) Astrobiology, 16, in press. [6] Johnson et al. (2015) Earth Science Reviews, 148,150-173.

Particle in a box in PT-symmetric quantum mechanics and an electromagnetic analog

NASA Astrophysics Data System (ADS)

Dasarathy, Anirudh; Isaacson, Joshua P.; Jones-Smith, Katherine; Tabachnik, Jason; Mathur, Harsh

2013-06-01

In PT-symmetric quantum mechanics a fundamental principle of quantum mechanics, that the Hamiltonian must be Hermitian, is replaced by another set of requirements, including notably symmetry under PT, where P denotes parity and T denotes time reversal. Here we study the role of boundary conditions in PT-symmetric quantum mechanics by constructing a simple model that is the PT-symmetric analog of a particle in a box. The model has the usual particle-in-a-box Hamiltonian but boundary conditions that respect PT symmetry rather than Hermiticity. We find that for a broad class of PT-symmetric boundary conditions the model respects the condition of unbroken PT symmetry, namely, that the Hamiltonian and the symmetry operator PT have simultaneous eigenfunctions, implying that the energy eigenvalues are real. We also find that the Hamiltonian is self-adjoint under the PT-symmetric inner product. Thus we obtain a simple soluble model that fulfills all the requirements of PT-symmetric quantum mechanics. In the second part of this paper we formulate a variational principle for PT-symmetric quantum mechanics that is the analog of the textbook Rayleigh-Ritz principle. Finally we consider electromagnetic analogs of the PT-symmetric particle in a box. We show that the isolated particle in a box may be realized as a Fabry-Perot cavity between an absorbing medium and its conjugate gain medium. Coupling the cavity to an external continuum of incoming and outgoing states turns the energy levels of the box into sharp resonances. Remarkably we find that the resonances have a Breit-Wigner line shape in transmission and a Fano line shape in reflection; by contrast, in the corresponding Hermitian case the line shapes always have a Breit-Wigner form in both transmission and reflection.

Modeling Hidden Circuits: An Authentic Research Experience in One Lab Period

ERIC Educational Resources Information Center

Moore, J. Christopher; Rubbo, Louis J.

2016-01-01

Two wires exit a black box that has three exposed light bulbs connected together in an unknown configuration. The task for students is to determine the circuit configuration without opening the box. In the activity described in this paper, we navigate students through the process of making models, developing and conducting experiments that can…

Analysis of Time-Series Quasi-Experiments. Final Report.

ERIC Educational Resources Information Center

Glass, Gene V.; Maguire, Thomas O.

The objective of this project was to investigate the adequacy of statistical models developed by G. E. P. Box and G. C. Tiao for the analysis of time-series quasi-experiments: (1) The basic model developed by Box and Tiao is applied to actual time-series experiment data from two separate experiments, one in psychology and one in educational…

Modern Deep-sea Sponges as Recorders of Bottom Water Silicon Isotopes

NASA Astrophysics Data System (ADS)

Hendry, K. R.; Georg, R. B.; Rickaby, R. E.; Robinson, L. F.; Halliday, A. N.

2008-12-01

Major zones of opal accumulation in the world oceans have experienced geographical shifts during the Cenozoic coincident with times of transition in oceanic circulation and climate. The global marine silica cycle is likely to respond to various large-scale changes including the distillation of Si and other nutrients in ocean basins; weathering and continental inputs; and biological productivity in surface waters. These processes could potentially be distinguished by their impact on the isotopic composition of dissolved silica in the world oceans. Although diatoms dominate uptake of silica in surface waters, box-modelling (de la Rocha and Bickle, 2005) suggests that sponges spicules have a greater potential to reflect whole ocean changes in the silica cycle, by recording deep-water silicon isotopes. Here, we introduce a new calibration study of modern deep- sea sponges collected on a transect cruise across the Drake Passage, in the Southern Ocean, from a range of depths and seawater silicic acid concentrations. Sponges were collected by benthic trawling, and dried immediately. The spicules were later isolated from cellular material and cleaned for surface contaminants, before dissolution and analysis by NuPlasma HR MC-ICP-MS in medium resolution mode. We discuss our preliminary data, the extent to which inter and intraspecies variations reflect environmental conditions, and the implications for palaeoreconstructions of the marine silicon cycle. de la Rocha, C. and M. Bickle (2005). Sensitivity of silicon isotopes to whole-ocean changes in the silica cycle. Marine Geology 217, 267-282.

Bayesian Analysis of the Glacial-Interglacial Methane Increase Constrained by Stable Isotopes and Earth System Modeling

NASA Astrophysics Data System (ADS)

Hopcroft, Peter O.; Valdes, Paul J.; Kaplan, Jed O.

2018-04-01

The observed rise in atmospheric methane (CH4) from 375 ppbv during the Last Glacial Maximum (LGM: 21,000 years ago) to 680 ppbv during the late preindustrial era is not well understood. Atmospheric chemistry considerations implicate an increase in CH4 sources, but process-based estimates fail to reproduce the required amplitude. CH4 stable isotopes provide complementary information that can help constrain the underlying causes of the increase. We combine Earth System model simulations of the late preindustrial and LGM CH4 cycles, including process-based estimates of the isotopic discrimination of vegetation, in a box model of atmospheric CH4 and its isotopes. Using a Bayesian approach, we show how model-based constraints and ice core observations may be combined in a consistent probabilistic framework. The resultant posterior distributions point to a strong reduction in wetland and other biogenic CH4 emissions during the LGM, with a modest increase in the geological source, or potentially natural or anthropogenic fires, accounting for the observed enrichment of δ13CH4.

Variational methods to estimate terrestrial ecosystem model parameters

NASA Astrophysics Data System (ADS)

Delahaies, Sylvain; Roulstone, Ian

2016-04-01

Carbon is at the basis of the chemistry of life. Its ubiquity in the Earth system is the result of complex recycling processes. Present in the atmosphere in the form of carbon dioxide it is adsorbed by marine and terrestrial ecosystems and stored within living biomass and decaying organic matter. Then soil chemistry and a non negligible amount of time transform the dead matter into fossil fuels. Throughout this cycle, carbon dioxide is released in the atmosphere through respiration and combustion of fossils fuels. Model-data fusion techniques allow us to combine our understanding of these complex processes with an ever-growing amount of observational data to help improving models and predictions. The data assimilation linked ecosystem carbon (DALEC) model is a simple box model simulating the carbon budget allocation for terrestrial ecosystems. Over the last decade several studies have demonstrated the relative merit of various inverse modelling strategies (MCMC, ENKF, 4DVAR) to estimate model parameters and initial carbon stocks for DALEC and to quantify the uncertainty in the predictions. Despite its simplicity, DALEC represents the basic processes at the heart of more sophisticated models of the carbon cycle. Using adjoint based methods we study inverse problems for DALEC with various data streams (8 days MODIS LAI, monthly MODIS LAI, NEE). The framework of constraint optimization allows us to incorporate ecological common sense into the variational framework. We use resolution matrices to study the nature of the inverse problems and to obtain data importance and information content for the different type of data. We study how varying the time step affect the solutions, and we show how "spin up" naturally improves the conditioning of the inverse problems.

Genome-wide survey of B-box proteins in potato (Solanum tuberosum)-Identification, characterization and expression patterns during diurnal cycle, etiolation and de-etiolation.

PubMed

Talar, Urszula; Kiełbowicz-Matuk, Agnieszka; Czarnecka, Jagoda; Rorat, Tadeusz

2017-01-01

Plant B-box domain proteins (BBX) mediate many light-influenced developmental processes including seedling photomorphogenesis, seed germination, shade avoidance and photoperiodic regulation of flowering. Despite the wide range of potential functions, the current knowledge regarding BBX proteins in major crop plants is scarce. In this study, we identify and characterize the StBBX gene family in potato, which is composed of 30 members, with regard to structural properties and expression profiles under diurnal cycle, etiolation and de-etiolations. Based on domain organization and phylogenetic relationships, StBBX genes have been classified into five groups. Using real-time quantitative PCR, we found that expression of most of them oscillates following a 24-h rhythm; however, large differences in expression profiles were observed between the genes regarding amplitude and position of the maximal and minimal expression levels in the day/night cycle. On the basis of the time-of-day/time-of-night, we distinguished three expression groups specifically expressed during the light and two during the dark phase. In addition, we showed that the expression of several StBBX genes is under the control of the circadian clock and that some others are specifically associated with the etiolation and de-etiolation conditions. Thus, we concluded that StBBX proteins are likely key players involved in the complex diurnal and circadian networks regulating plant development as a function of light conditions and day duration.

DEAD-box Helicases as Integrators of RNA, Nucleotide and Protein Binding

PubMed Central

Putnam, Andrea A.

2013-01-01

DEAD-box helicases perform diverse cellular functions in virtually all steps of RNA metabolism from Bacteria to Humans. Although DEAD-box helicases share a highly conserved core domain, the enzymes catalyze a wide range of biochemical reactions. In addition to the well established RNA unwinding and corresponding ATPase activities, DEAD-box helicases promote duplex formation and displace proteins from RNA. They can also function as assembly platforms for larger ribonucleoprotein complexes, and as metabolite sensors. This review aims to provide a perspective on the diverse biochemical features of DEAD-box helicases and connections to structural information. We discuss these data in the context of a model that views the enzymes as integrators of RNA, nucleotide, and protein binding. PMID:23416748

Use of Moderate-Resolution Imaging Spectroradiometer bidirectional reflectance distribution function products to enhance simulated surface albedos

NASA Astrophysics Data System (ADS)

Roesch, Andreas; Schaaf, Crystal; Gao, Feng

2004-06-01

Moderate-Resolution Imaging Spectroradiometer (MODIS) surface albedo at high spatial and spectral resolution is compared with other remotely sensed climatologies, ground-based data, and albedos simulated with the European Center/Hamburg 4 (ECHAM4) global climate model at T42 resolution. The study demonstrates the importance of MODIS data in assessing and improving albedo parameterizations in weather forecast and climate models. The remotely sensed PINKER surface albedo climatology follows the MODIS estimates fairly well in both the visible and near-infrared spectra, whereas ECHAM4 simulates high positive albedo biases over snow-covered boreal forests and the Himalayas. In contrast, the ECHAM4 albedo is probably too low over the Sahara sand desert and adjacent steppes. The study clearly indicates that neglecting albedo variations within T42 grid boxes leads to significant errors in the simulated regional climate and horizontal fluxes, mainly in mountainous and/or snow-covered regions. MODIS surface albedo at 0.05 resolution agrees quite well with in situ field measurements collected at Baseline Surface Radiation Network (BSRN) sites during snow-free periods, while significant positive biases are found under snow-covered conditions, mainly due to differences in the vegetation cover at the BSRN site (short grass) and the vegetation within the larger MODIS grid box. Black sky (direct beam) albedo from the MODIS bidirectional reflectance distribution function model captures the diurnal albedo cycle at BSRN sites with sufficient accuracy. The greatest negative biases are generally found when the Sun is low. A realistic approach for relating albedo and zenith angle has been proposed. Detailed evaluations have demonstrated that ignoring the zenith angle dependence may lead to significant errors in the surface energy balance.

Compensated Box-Jenkins transfer function for short term load forecast

DOE Office of Scientific and Technical Information (OSTI.GOV)

Breipohl, A.; Yu, Z.; Lee, F.N.

In the past years, the Box-Jenkins ARIMA method and the Box-Jenkins transfer function method (BJTF) have been among the most commonly used methods for short term electrical load forecasting. But when there exists a sudden change in the temperature, both methods tend to exhibit larger errors in the forecast. This paper demonstrates that the load forecasting errors resulting from either the BJ ARIMA model or the BJTF model are not simply white noise, but rather well-patterned noise, and the patterns in the noise can be used to improve the forecasts. Thus a compensated Box-Jenkins transfer method (CBJTF) is proposed tomore » improve the accuracy of the load prediction. Some case studies have been made which result in about a 14-33% reduction of the root mean square (RMS) errors of the forecasts, depending on the compensation time period as well as the compensation method used.« less

Functional redundancy and/or ongoing pseudogenization among F-box protein genes expressed in Arabidopsis male gametophyte.

PubMed

Ikram, Sobia; Durandet, Monique; Vesa, Simona; Pereira, Serge; Guerche, Philippe; Bonhomme, Sandrine

2014-06-01

F-box protein genes family is one of the largest gene families in plants, with almost 700 predicted genes in the model plant Arabidopsis. F-box proteins are key components of the ubiquitin proteasome system that allows targeted protein degradation. Transcriptome analyses indicate that half of these F-box protein genes are found expressed in microspore and/or pollen, i.e., during male gametogenesis. To assess the role of F-box protein genes during this crucial developmental step, we selected 34 F-box protein genes recorded as highly and specifically expressed in pollen and isolated corresponding insertion mutants. We checked the expression level of each selected gene by RT-PCR and confirmed pollen expression for 25 genes, but specific expression for only 10 of the 34 F-box protein genes. In addition, we tested the expression level of selected F-box protein genes in 24 mutant lines and showed that 11 of them were null mutants. Transmission analysis of the mutations to the progeny showed that none of the single mutations was gametophytic lethal. These unaffected transmission efficiencies suggested leaky mutations or functional redundancy among F-box protein genes. Cytological observation of the gametophytes in the mutants confirmed these results. Combinations of mutations in F-box protein genes from the same subfamily did not lead to transmission defect either, further highlighting functional redundancy and/or a high proportion of pseudogenes among these F-box protein genes.

The Visible Signature Modelling and Evaluation ToolBox

DTIC Science & Technology

2008-12-01

Technology Organisation DSTO–TR–2212 ABSTRACT A new software suite, the Visible Signature ToolBox ( VST ), has been developed to model and evaluate the...visible signatures of maritime platforms. The VST is a collection of commercial, off-the-shelf software and DSTO developed pro- grams and procedures. The...suite. The VST can be utilised to model and assess visible signatures of maritime platforms. A number of examples are presented to demonstrate the

Repetitive box lifting performance is impaired in a hot environment: implications for altered work-rest cycles.

PubMed

Maresh, Carl M; Sökmen, Bulent; Armstrong, Lawrence E; Dias, Joao C; Pryor, J Luke; Creighton, Brent C; Muñoz, Colleen X; Apicella, Jenna M; Casa, Douglas J; Lee, Elaine C; Anderson, Jeffery M; Kraemer, William J

2014-01-01

This study investigated the effects of environmental temperature on repetitive box lifting (RBL) performance, associated stress hormone and creatine kinase (CK) responses. Ten healthy males performed two experimental trials in a random crossover design. The trials consisted of three 40 min (10 min sitting, 20 min standing, and 10 min RBL) circuits performed in either 23 °C or 38 °C followed by a 180 min seated recovery period in 23 °C. RBL performance (i.e., number of boxes lifted) was reduced (p ≤ 0.05) in 38 °C compared to the 23 °C trial. Physiological Strain Index was significantly different between trials (38 °C: 8.5 ± 1.1 versus 23 °C: 7.2 ± 0.7; p ≤ 0.01). Plasma testosterone was elevated (p ≤ 0.05) across both trials and then decreased at 60 min recovery, compared to pre-exercise (PRE) measures, but was higher (p ≤ 0.05) during the 38 °C trial. Plasma cortisol increased (p ≤ 0.05) at 60 min during both trials and remained elevated until 120 min in 23 °C, and until 60 min recovery in 38 °C. Serum CK was greater through 48 hr post compared to PRE values in both trials. Thus, 10 min RBL performance was reduced in 38 °C despite the 30-min rest periods between RBL intervals. Plasma testosterone and cortisol were generally higher during the 38 °C trial, suggesting a greater stress response. Additional research is needed to determine optimal work:rest cycles for maximizing work performance in thermally oppressive environments.

Modifications to JLab 12 GeV Refrigerator and Wide Range Mix Mode Performance Testing Results

NASA Astrophysics Data System (ADS)

Knudsen, P.; Ganni, V.; Hasan, N.; Dixon, K.; Norton, R.; Creel, J.

2017-02-01

Analysis of data obtained during the spring 2013 commissioning of the new 4.5 K refrigeration system at Jefferson Lab (JLab) for the 12 GeV upgrade indicated a wide capacity range with good efficiency and minimal operator interaction. Testing also showed that the refrigerator required higher liquid nitrogen (LN) consumption for its pre-cooler than anticipated by the design. This does not affect the capacity of the refrigerator, but it does result in an increased LN utility cost. During the summer of 2015 the modifications were implemented by the cold box manufacturer, according to a design similar to the JLab 12 GeV cold box specification. Subsequently, JLab recommissioned the cold box and performed extensive performance testing, ranging from 20% to 100% of the design maximum capacity, and in various modes of operation, ranging from pure refrigeration, pure liquefaction, half-and-half mix mode and at selected design modes using the Floating Pressure - Ganni Cycle. The testing demonstrated that the refrigerator system has a good and fairly constant performance over a wide capacity range and different modes of operation. It also demonstrated the modifications resulted in a LN consumption that met the design for the pure refrigeration mode (which is the most demanding) and was lower than the design for the nominal and maximum capacity modes. In addition, a pulsed-load test, similar to what is expected for cryogenic systems supporting fusion experiments, was conducted to observe the response using the Floating Pressure - Ganni Cycle, which was stable and robust. This paper will discuss the results and analysis of this testing pertaining to the LN consumption, the system efficiency over a wide range of capacity and different modes and the behaviour of the system to a pulsed load.

The influence of FRCs reinforcement on marginal adaptation of CAD/CAM composite resin endocrowns after simulated fatigue loading.

PubMed

Rocca, Giovanni Tommaso; Saratti, Carlo Massimo; Poncet, Antoine; Feilzer, Albert J; Krejci, Ivo

2016-05-01

To evaluate the marginal adaptation of endodontically treated molars restored with CAD/CAM composite resin endocrowns either with or without reinforcement by fibre reinforced composites (FRCs), used in different configurations. 32 human endodontically treated molars were cut 2 mm over the CEJ. Two interproximal boxes were created with the margins located 1 mm below the CEJ (distal box) and 1 mm over the CEJ (mesial box). All specimens were divided in four groups (n = 8). The pulp chamber was filled with: group 1 (control), hybrid resin composite (G-aenial Posterior, GC); group 2, as group 1 but covered by 3 meshes of E-glass fibres (EverStick NET, Stick Tech); group 3, FRC resin (EverX Posterior, GC); group 4, as group 3 but covered by 3 meshes of E-glass fibres. The crowns of all teeth were restored with CAD/CAM composite resin endocrowns (LAVA Ultimate, 3M). All specimens were thermo-mechanically loaded in a computer-controlled chewing machine (600,000 cycles, 1.6 Hz, 49 N and simultaneously 1500 thermo-cycles, 60 s, 5-55 °C). Marginal analysis before and after the loading was carried out on epoxy replicas by SEM at 200× magnification. For all the groups, the percentage values of perfect marginal adaptation after loading were always significantly lower than before loading (p < 0.05). The marginal adaptation before and after loading was not significantly different between the experimental groups (p > 0.05). Within the limitations of this in vitro study, the use of FRCs to reinforce the pulp chamber of devitalized molars restored with CAD/CAM composite resin restorations did not significantly influenced their marginal quality.

The impact performance of headguards for combat sports.

PubMed

McIntosh, Andrew S; Patton, Declan A

2015-09-01

To assess the impact energy attenuation performance of a range of headguards for combat sports. Seven headguards worn during combat sport training or competition, including two Association Internationale de Boxe Amateur (AIBA)-approved boxing models, were tested using drop tests. An International Organization for Standardization (ISO) rigid headform was used with a 5.6 kg drop assembly mass. Tests were conducted against a flat rigid anvil both with and without a boxing glove section. The centre forehead and lateral headguard areas were tested. Peak headform acceleration was measured. Tests from a selection of drop heights and repeated tests on the same headguard were conducted. Headguard performance varied by test condition. For the 0.4 m rigid anvil tests, the best model headguard was the thickest producing an average peak headform acceleration over 5 tests of 48 g compared with 456 g for the worst model. The mean peak acceleration for the 0.4, 0.5 and 0.6 frontal and lateral rigid anvil impact tests was between 32% and 40% lower for the Top Ten boxing model compared with the Adidas boxing model. The headguard performance deterioration observed with repeat impact against the flat anvil was reduced for impacts against the glove section. The overall reduction in acceleration for the combination of glove and headguard in comparison to the headguard condition was in the range of 72-93% for 0.6 and 0.8 m drop tests. The impact tests show the benefits of performance testing in identifying differences between headguard models. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

The Development of a Virtual McKenna Military Operations in Urban Terrain (MOUT) Site for Command, Control, Communication, Computing, Intelligence, Surveillance, and Reconnaissance (C4ISR) Studies

DTIC Science & Technology

2007-06-01

4.2 Creating the Skybox and Terrain Model .........................................................................7 4.3 Creating New Textures... Skybox and Terrain Model The next step was to build a sky box. Since it already resided in Raven Shield, the creation of the sky box was limited to

Thinking inside the Tool Box: Creativity, Constraints, and the Colossal Portraits of Chuck Close

ERIC Educational Resources Information Center

Stokes, Patricia D.

2014-01-01

This article presents a problem-solving model to examine the often problematic relationship between expertise and creativity. The model has two premises, each the opposite of a common cliché. The first cliché asserts that creativity requires thinking outside-the-box. The first premise argues that experts can only think and problem solve inside the…

Improved helicopter aeromechanical stability analysis using segmented constrained layer damping and hybrid optimization

NASA Astrophysics Data System (ADS)

Liu, Qiang; Chattopadhyay, Aditi

2000-06-01

Aeromechanical stability plays a critical role in helicopter design and lead-lag damping is crucial to this design. In this paper, the use of segmented constrained damping layer (SCL) treatment and composite tailoring is investigated for improved rotor aeromechanical stability using formal optimization technique. The principal load-carrying member in the rotor blade is represented by a composite box beam, of arbitrary thickness, with surface bonded SCLs. A comprehensive theory is used to model the smart box beam. A ground resonance analysis model and an air resonance analysis model are implemented in the rotor blade built around the composite box beam with SCLs. The Pitt-Peters dynamic inflow model is used in air resonance analysis under hover condition. A hybrid optimization technique is used to investigate the optimum design of the composite box beam with surface bonded SCLs for improved damping characteristics. Parameters such as stacking sequence of the composite laminates and placement of SCLs are used as design variables. Detailed numerical studies are presented for aeromechanical stability analysis. It is shown that optimum blade design yields significant increase in rotor lead-lag regressive modal damping compared to the initial system.

Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate.

PubMed

Emanuele, Michael J; Ciccia, Alberto; Elia, Andrew E H; Elledge, Stephen J

2011-06-14

The anaphase-promoting complex/cyclosome (APC/C) is a cell cycle-regulated E3 ubiquitin ligase that controls the degradation of substrate proteins at mitotic exit and throughout the G1 phase. We have identified an APC/C substrate and cell cycle-regulated protein, KIAA0101/PAF15. PAF15 protein levels peak in the G2/M phase of the cell cycle and drop rapidly at mitotic exit in an APC/C- and KEN-box-dependent fashion. PAF15 associates with proliferating cell nuclear antigen (PCNA), and depletion of PAF15 decreases the number of cells in S phase, suggesting a role for it in cell cycle regulation. Following irradiation, PAF15 colocalized with γH2AX foci at sites of DNA damage through its interaction with PCNA. Finally, PAF15 depletion led to an increase in homologous recombination-mediated DNA repair, and overexpression caused sensitivity to UV-induced DNA damage. We conclude that PAF15 is an APC/C-regulated protein involved in both cell cycle progression and the DNA damage response.

The puzzle box as a simple and efficient behavioral test for exploring impairments of general cognition and executive functions in mouse models of schizophrenia.

PubMed

Ben Abdallah, Nada M-B; Fuss, Johannes; Trusel, Massimo; Galsworthy, Michael J; Bobsin, Kristin; Colacicco, Giovanni; Deacon, Robert M J; Riva, Marco A; Kellendonk, Christoph; Sprengel, Rolf; Lipp, Hans-Peter; Gass, Peter

2011-01-01

Deficits in executive functions are key features of schizophrenia. Rodent behavioral paradigms used so far to find animal correlates of such deficits require extensive effort and time. The puzzle box is a problem-solving test in which mice are required to complete escape tasks of increasing difficulty within a limited amount of time. Previous data have indicated that it is a quick but highly reliable test of higher-order cognitive functioning. We evaluated the use of the puzzle box to explore executive functioning in five different mouse models of schizophrenia: mice with prefrontal cortex and hippocampus lesions, mice treated sub-chronically with the NMDA-receptor antagonist MK-801, mice constitutively lacking the GluA1 subunit of AMPA-receptors, and mice over-expressing dopamine D2 receptors in the striatum. All mice displayed altered executive functions in the puzzle box, although the nature and extent of the deficits varied between the different models. Deficits were strongest in hippocampus-lesioned and GluA1 knockout mice, while more subtle deficits but specific to problem solving were found in the medial prefrontal-lesioned mice, MK-801-treated mice, and in mice with striatal overexpression of D2 receptors. Data from this study demonstrate the utility of the puzzle box as an effective screening tool for executive functions in general and for schizophrenia mouse models in particular. Published by Elsevier Inc.

Molecular mechanism of APC/C activation by mitotic phosphorylation

PubMed Central

Alfieri, Claudio; Zhang, Ziguo; Yang, Jing; Maslen, Sarah; Skehel, Mark; Barford, David

2016-01-01

In eukaryotes, the anaphase-promoting complex/cyclosome (APC/C) regulates the ubiquitin-dependent proteolysis of specific cell cycle proteins to coordinate chromosome segregation in mitosis and entry into G1 (refs 1,2). The APC/C’s catalytic activity and ability to specify the destruction of particular proteins at different phases of the cell cycle are controlled by its interaction with two structurally related coactivator subunits (Cdc20 and Cdh1). Coactivators recognize substrate degrons3, and enhance the APC/C’s affinity for its cognate E2 (refs 4–6). During mitosis, cyclin-dependent kinase and polo kinase control Cdc20 and Cdh1-mediated activation of the APC/C. Hyper-phosphorylation of APC/C subunits, notably Apc1 and Apc3, is required for Cdc20 to activate the APC/C7–12, whereas phosphorylation of Cdh1 prevents its association with the APC/C9,13,14. Since both coactivators associate with the APC/C through their common C box15 and IR (Ile-Arg) tail motifs16,17, the mechanism underlying this differential regulation is unclear, as is the role of specific APC/C phosphorylation sites. Here, using cryo-electron microscopy (cryo-EM) and biochemical analysis, we define the molecular basis of how APC/C phosphorylation allows for its control by Cdc20. An auto-inhibitory (AI) segment of Apc1 acts as a molecular switch that in apo unphosphorylated APC/C interacts with the C-box binding site and obstructs engagement of Cdc20. Phosphorylation of the AI segment displaces it from the C-box binding site. Efficient phosphorylation of the AI segment, and thus relief of auto-inhibition, requires the recruitment of Cdk-cyclin-Cks to a hyper-phosphorylated loop of Apc3. We also find that the small molecule inhibitor, tosyl-L-arginine methyl ester (TAME), preferentially suppresses APC/CCdc20 rather than APC/CCdh1, and interacts with both the C-box and IR-tail binding sites. Our results reveal the mechanism for the regulation of mitotic APC/C by phosphorylation and provide a rationale for the development of selective inhibitors of this state. PMID:27120157

Molecular mechanism of APC/C activation by mitotic phosphorylation.

PubMed

Zhang, Suyang; Chang, Leifu; Alfieri, Claudio; Zhang, Ziguo; Yang, Jing; Maslen, Sarah; Skehel, Mark; Barford, David

2016-05-12

In eukaryotes, the anaphase-promoting complex (APC/C, also known as the cyclosome) regulates the ubiquitin-dependent proteolysis of specific cell-cycle proteins to coordinate chromosome segregation in mitosis and entry into the G1 phase. The catalytic activity of the APC/C and its ability to specify the destruction of particular proteins at different phases of the cell cycle are controlled by its interaction with two structurally related coactivator subunits, Cdc20 and Cdh1. Coactivators recognize substrate degrons, and enhance the affinity of the APC/C for its cognate E2 (refs 4-6). During mitosis, cyclin-dependent kinase (Cdk) and polo-like kinase (Plk) control Cdc20- and Cdh1-mediated activation of the APC/C. Hyperphosphorylation of APC/C subunits, notably Apc1 and Apc3, is required for Cdc20 to activate the APC/C, whereas phosphorylation of Cdh1 prevents its association with the APC/C. Since both coactivators associate with the APC/C through their common C-box and Ile-Arg tail motifs, the mechanism underlying this differential regulation is unclear, as is the role of specific APC/C phosphorylation sites. Here, using cryo-electron microscopy and biochemical analysis, we define the molecular basis of how phosphorylation of human APC/C allows for its control by Cdc20. An auto-inhibitory segment of Apc1 acts as a molecular switch that in apo unphosphorylated APC/C interacts with the C-box binding site and obstructs engagement of Cdc20. Phosphorylation of the auto-inhibitory segment displaces it from the C-box-binding site. Efficient phosphorylation of the auto-inhibitory segment, and thus relief of auto-inhibition, requires the recruitment of Cdk-cyclin in complex with a Cdk regulatory subunit (Cks) to a hyperphosphorylated loop of Apc3. We also find that the small-molecule inhibitor, tosyl-l-arginine methyl ester, preferentially suppresses APC/C(Cdc20) rather than APC/C(Cdh1), and interacts with the binding sites of both the C-box and Ile-Arg tail motifs. Our results reveal the mechanism for the regulation of mitotic APC/C by phosphorylation and provide a rationale for the development of selective inhibitors of this state.

Expectation Maximization Algorithm for Box-Cox Transformation Cure Rate Model and Assessment of Model Misspecification Under Weibull Lifetimes.

PubMed

Pal, Suvra; Balakrishnan, Narayanaswamy

2018-05-01

In this paper, we develop likelihood inference based on the expectation maximization algorithm for the Box-Cox transformation cure rate model assuming the lifetimes to follow a Weibull distribution. A simulation study is carried out to demonstrate the performance of the proposed estimation method. Through Monte Carlo simulations, we also study the effect of model misspecification on the estimate of cure rate. Finally, we analyze a well-known data on melanoma with the model and the inferential method developed here.

The time series approach to short term load forecasting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagan, M.T.; Behr, S.M.

The application of time series analysis methods to load forecasting is reviewed. It is shown than Box and Jenkins time series models, in particular, are well suited to this application. The logical and organized procedures for model development using the autocorrelation function make these models particularly attractive. One of the drawbacks of these models is the inability to accurately represent the nonlinear relationship between load and temperature. A simple procedure for overcoming this difficulty is introduced, and several Box and Jenkins models are compared with a forecasting procedure currently used by a utility company.

Flutter analysis of composite box beams

NASA Technical Reports Server (NTRS)

Hodges, Dewey H.; Greenman, Matthew

1995-01-01

The dynamic aeroelastic instability of flutter is an important factor in the design of modern high-speed, flexible aircraft. The current trend is toward the creative use of composites to delay flutter. To obtain an optimum design, we need an accurate as well as efficient model. As a first step towards this goal, flutter analysis is carried out for an unswept composite box beam using a linear structural model and Theodorsen's unsteady aerodynamic theory. Structurally, the wing was modeled as a thin-walled box-beam of rectangular cross section. Theodorsen's theory was used to get 2-D unsteady aerodynamic forces, which were integrated over the span. A free-vibration analysis is carried out. These fundamental modes are used to get the flutter solution using the V-g method. Future work is intended to build on this foundation.

Seasonal varability of the Canary Current

NASA Astrophysics Data System (ADS)

Vélez-Belchí, P.; Hernandez-Guerra, A.; Pérez-Hernández, M. D.

2016-02-01

The Atlantic meridional overturning circulation (AMOC) is recognized as an important component of the climate system, contributing to the relatively mild climate of northwest Europe. Due to its importance, the strength of the AMOC is continually monitored along 26ºN with several moorings, east of the Bahamas, in the Middle Atlantic Ridge and south of the Canary islands, known as the RAPID array. The measurements of the RAPID array show a 6 Sv seasonal cycle for the AMOC, and recent studies have pointed out the dynamics of the eastern Atlantic as the main driver for this seasonal cycle, specifically, rossby waves excited south of the Canary Islands.Due to the important role of the eastern Atlantic, in this study we describe the seasonal cycle of the Canary Current (CC) and the Canary Upwelling Current (CUC), using hydrographic data from two cruises carried out in a box around the Canary Islands, the region where the eastern component of the RAPID array is placed. CTD, VMADCP and LADCP data were combined with inverse modeling in order to determine absolute geostrophic transports in the Canary Islands region in fall and spring. During spring, the overall transport of Canary Current and the CUC was southward. In the Lanzarote Passage (LP), between the Canary Islands and Africa, the CUC transported 0.6±0.20 Sv southward, while the Canary Current transported 1.0±0.40 Sv in the oceanic waters of the Canary Islands Archipelago. During fall, the CUC transported 2.8±0.4Sv northward, while the CC transported 2.9±0.60 Sv southward in the oceanic waters of the Canary Islands Archipelago. The seasonal cycle observed has and amplitude of 3.4Sv for the CUC and 1.9Sv for the CC. Data from a mooring in the LP and the hydrographic data was used to calibrate geostrophic transport estimated using altimetry data. The amplitude of the seasonal cycle of the geostrophic transport obtained using the calibrated altimetry data (Figure 1) was quite similar to the seasonal cycle of the Eastern Atlantic contribution to the AMOC, as measured by the RAPID array. To understand the relationship between the seasonal cycle found in the CC and CUC, and the amplitude of the seasonal cycle of the AMOC transport associated with Rossby waves, a sensitivity study of the Rossby wave model is included.

Dynamics of movie competition and popularity spreading in recommender systems.

PubMed

Yeung, C H; Cimini, G; Jin, C-H

2011-01-01

We introduce a simple model to study movie competition in recommender systems. Movies of heterogeneous quality compete against each other through viewers' reviews and generate interesting dynamics at the box office. By assuming mean-field interactions between the competing movies, we show that the runaway effect of popularity spreading is triggered by defeating the average review score, leading to box-office hits: Popularity rises and peaks before fade-out. The average review score thus characterizes the critical movie quality necessary for transition from box-office bombs to blockbusters. The major factors affecting the critical review score are examined. By iterating the mean-field dynamical equations, we obtain qualitative agreements with simulations and real systems in the dynamical box-office forms, revealing the significant role of competition in understanding box-office dynamics.

Dynamics of movie competition and popularity spreading in recommender systems

NASA Astrophysics Data System (ADS)

Yeung, C. H.; Cimini, G.; Jin, C.-H.

2011-01-01

We introduce a simple model to study movie competition in recommender systems. Movies of heterogeneous quality compete against each other through viewers’ reviews and generate interesting dynamics at the box office. By assuming mean-field interactions between the competing movies, we show that the runaway effect of popularity spreading is triggered by defeating the average review score, leading to box-office hits: Popularity rises and peaks before fade-out. The average review score thus characterizes the critical movie quality necessary for transition from box-office bombs to blockbusters. The major factors affecting the critical review score are examined. By iterating the mean-field dynamical equations, we obtain qualitative agreements with simulations and real systems in the dynamical box-office forms, revealing the significant role of competition in understanding box-office dynamics.

Autocorrelated process control: Geometric Brownian Motion approach versus Box-Jenkins approach

NASA Astrophysics Data System (ADS)

Salleh, R. M.; Zawawi, N. I.; Gan, Z. F.; Nor, M. E.

2018-04-01

Existing of autocorrelation will bring a significant effect on the performance and accuracy of process control if the problem does not handle carefully. When dealing with autocorrelated process, Box-Jenkins method will be preferred because of the popularity. However, the computation of Box-Jenkins method is too complicated and challenging which cause of time-consuming. Therefore, an alternative method which known as Geometric Brownian Motion (GBM) is introduced to monitor the autocorrelated process. One real case of furnace temperature data is conducted to compare the performance of Box-Jenkins and GBM methods in monitoring autocorrelation process. Both methods give the same results in terms of model accuracy and monitoring process control. Yet, GBM is superior compared to Box-Jenkins method due to its simplicity and practically with shorter computational time.

Using Maximum Likelihood Statistical Methods and Pigment Flux Data to Constrain Particle Exchange and Organic Matter Remineralization Rate Constants in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Wang, W.; Lee, C.; Cochran, K. K.; Armstrong, R. A.

2016-02-01

Sinking particles play a pivotal role transferring material from the surface to the deeper ocean via the "biological pump". To quantify the extent to which these particles aggregate and disaggregate, and thus affect particle settling velocity, we constructed a box model to describe organic matter cycling. The box model was fit to chloropigment data sampled in the 2005 MedFlux project using Indented Rotating Sphere sediment traps operating in Settling Velocity (SV) mode. Because of the very different pigment compositions of phytoplankton and fecal pellets, chloropigments are useful as proxies to record particle exchange. The maximum likelihood statistical method was used to estimate particle aggregation, disaggregation, and organic matter remineralization rate constants. Eleven settling velocity categories collected by SV sediment traps were grouped into two sinking velocity classes (fast- and slow-sinking) to decrease the number of parameters that needed to be estimated. Organic matter degradation rate constants were estimated to be 1.2, 1.6, and 1.1 y^-1, which are equivalent to degradation half-lives of 0.60, 0.45, and 0.62 y^-1, at 313, 524, and 1918 m, respectively. Rate constants of chlorophyll a degradation to pheopigments (pheophorbide, pheophytin, and pyropheophorbide) were estimated to be 0.88, 0.93, and 1.2 y^-1, at 313, 524, and 1918 m, respectively. Aggregation rate constants varied little with depth, with the highest value being 0.07 y^-1 at 524 m. Disaggregation rate constants were highest at 524 m (14 y^-1) and lowest at 1918 m (9.6 y^-1)

Aerosol Measurements in the Atmospheric Surface Layer at L'Aquila, Italy: Focus on Biogenic Primary Particles

NASA Astrophysics Data System (ADS)

Pitari, Giovanni; Coppari, Eleonora; De Luca, Natalia; Di Carlo, Piero; Pace, Loretta

2014-09-01

Two year measurements of aerosol concentration and size distribution (0.25 μm < d < 30 μm) in the atmospheric surface layer, collected in L'Aquila (Italy) with an optical particle counter, are reported and analysed for the different modes of the particle size distribution. A different seasonal behaviour is shown for fine mode aerosols (largely produced by anthropogenic combustion), coarse mode and large-sized aerosols, whose abundance is regulated not only by anthropogenic local production, but also by remote natural sources (via large scale atmospheric transport) and by local sources of primary biogenic aerosols. The observed total abundance of large particles with diameter larger than 10 μm is compared with a statistical counting of primary biogenic particles, made with an independent technique. Results of these two observational approaches are analysed and compared to each other, with the help of a box model driven by observed meteorological parameters and validated with measurements of fine and coarse mode aerosols and of an atmospheric primary pollutant of anthropogenic origin (NOx). Except in winter months, primary biogenic particles in the L'Aquila measurement site are shown to dominate the atmospheric boundary layer population of large aerosol particles with diameter larger than 10 μm (about 80 % of the total during summer months), with a pronounced seasonal cycle, contrary to fine mode aerosols of anthropogenic origin. In order to explain these findings, the main mechanisms controlling the abundance and variability of particulate matter tracers in the atmospheric surface layer are analysed with the numerical box-model.

The feasibility and effectiveness of high-intensity boxing training versus moderate-intensity brisk walking in adults with abdominal obesity: a pilot study.

PubMed

Cheema, Birinder S; Davies, Timothy B; Stewart, Matthew; Papalia, Shona; Atlantis, Evan

2015-01-01

High-intensity interval training (HIIT) performed on exercise cycle or treadmill is considered safe and often more beneficial for fat loss and cardiometabolic health than moderate-intensity continuous training (MICT). The aim of this pilot study was to assess the feasibility and effectiveness of a 12-week boxing training (HIIT) intervention compared with an equivalent dose of brisk walking (MICT) in obese adults. Men and women with abdominal obesity and body mass index >25 kg/m(2) were randomized to either a boxing group or a brisk walking (control) group for 12 weeks. Each group engaged in 4 training sessions per week, equated for total physical activity. Feasibility outcomes included recruitment rates, assessment of training intensities, adherence and adverse events. Effectiveness was assessed pre and post intervention via pertinent obesity-, cardiovascular-, and health-related quality of life (HRQoL) outcomes. Nineteen individuals expressed an interest and 63% (n = 12) consented. Recruitment was slower than anticipated (1.3 participants/week). The boxing group trained at a significantly higher intensity each week versus the brisk walking group (p < 0.05). Two participants in the boxing group experienced an adverse event; both continued to exercise with modifications to the exercise program. No other adverse events were noted. The boxing group attended more sessions (79% vs. 55%) and had a lower attrition rate (n = 0 vs. n = 2) than the walking group. Analysis of covariance revealed that the boxing group significantly improved body fat percentage (p = 0.047), systolic blood pressure (p = 0.026), augmentation index (AIx; p < 0.001), absolute VO2max (p = 0.015), and Physical Functioning (p = 0.042) and Vitality (p = 0.024) domains of HRQoL over time. The walking group did not improve any clinical outcomes, and experienced a worsening of Vitality (p = 0.043). Boxing training (HIIT) in adults with abdominal obesity is feasible and may elicit a better therapeutic effect on obesity, cardiovascular, and HRQoL outcomes than an equivalent dose of brisk walking (MICT). Robustly designed randomized controlled trials are required to confirm these findings and inform clinical guidelines and practice for obesity treatment. ACTRN12615000007538.

Box truss analysis and technology development. Task 1: Mesh analysis and control

NASA Technical Reports Server (NTRS)

Bachtell, E. E.; Bettadapur, S. S.; Coyner, J. V.

1985-01-01

An analytical tool was developed to model, analyze and predict RF performance of box truss antennas with reflective mesh surfaces. The analysis system is unique in that it integrates custom written programs for cord tied mesh surfaces, thereby drastically reducing the cost of analysis. The analysis system is capable of determining the RF performance of antennas under any type of manufacturing or operating environment by integrating together the various disciplines of design, finite element analysis, surface best fit analysis and RF analysis. The Integrated Mesh Analysis System consists of six separate programs: The Mesh Tie System Model Generator, The Loadcase Generator, The Model Optimizer, The Model Solver, The Surface Topography Solver and The RF Performance Solver. Additionally, a study using the mesh analysis system was performed to determine the effect of on orbit calibration, i.e., surface adjustment, on a typical box truss antenna.

POD Model Reconstruction for Gray-Box Fault Detection

NASA Technical Reports Server (NTRS)

Park, Han; Zak, Michail

2007-01-01

Proper orthogonal decomposition (POD) is the mathematical basis of a method of constructing low-order mathematical models for the "gray-box" fault-detection algorithm that is a component of a diagnostic system known as beacon-based exception analysis for multi-missions (BEAM). POD has been successfully applied in reducing computational complexity by generating simple models that can be used for control and simulation for complex systems such as fluid flows. In the present application to BEAM, POD brings the same benefits to automated diagnosis. BEAM is a method of real-time or offline, automated diagnosis of a complex dynamic system.The gray-box approach makes it possible to utilize incomplete or approximate knowledge of the dynamics of the system that one seeks to diagnose. In the gray-box approach, a deterministic model of the system is used to filter a time series of system sensor data to remove the deterministic components of the time series from further examination. What is left after the filtering operation is a time series of residual quantities that represent the unknown (or at least unmodeled) aspects of the behavior of the system. Stochastic modeling techniques are then applied to the residual time series. The procedure for detecting abnormal behavior of the system then becomes one of looking for statistical differences between the residual time series and the predictions of the stochastic model.

Estimating on-orbit optical properties for GNSS satellites

NASA Astrophysics Data System (ADS)

Rodriguez Solano, M. Sc. Carlos Javier; Hugentobler, Urs; Steigenberger, Peter

One of the major uncertainty sources affecting GNSS satellite orbits is the direct solar radiation pressure. Other important though smaller effects are caused by deviations of the satellite from nominal attitude, Earth radiation pressure and thermal re-radiation forces. To compensate such effects, the IGS Analysis Centers usually estimate empirical parameters which fit best the tracking data obtained from a global network of GNSS ground stations to compute orbits at an accuracy level of 2.5 cm for GPS and of 5 cm for GLONASS. On the other hand, there are also accurate physical models for the above mentioned non-conservative forces affecting the GNSS satellites such as the ROCK models for GPS satellites. However, current models fail to predict the real orbit behaviour with sufficient accuracy, mainly due to deviations from nominal attitude, from inaccurately known optical properties, or from aging of the satellite surfaces. In this context an analytical box-wing model has been derived based on the physical interaction between the direct solar radiation and a satellite consisting of a bus (box shape) and solar panels. Furthermore some of the parameters of the box-wing model can be adjusted to fit the GNSS tracking data, namely the fraction of reflected photons of the corresponding satellite surfaces. For this study GNSS orbits are generated based on one year of tracking data from the global IGS network and involving the box-wing model implemented into the Bernese GPS Software. The processing scheme was derived from the one used at the Center for Orbit Determination in Europe (CODE). The resulting satellite orbits are compared with CODE Final Orbits and validated using SLR (Satellite Laser Ranging) tracking data. Additionally, in the case of GPS satellites, the box-wing model and the obtained optical properties are compared directly with a priori models (e.g. ROCK), which deal with the direct solar radiation impacting the satellites.

Artificial light at night affects sleep behaviour differently in two closely related songbird species.

PubMed

Sun, Jiachen; Raap, Thomas; Pinxten, Rianne; Eens, Marcel

2017-12-01

Artificial light at night (ALAN) or light pollution is an increasing and worldwide problem. There is growing concern that because of the disruption of natural light cycles, ALAN may pose serious risks for wildlife. While ALAN has been shown to affect many aspects of animal behaviour and physiology, few studies have experimentally studied whether individuals of different species in the wild respond differently to ALAN. Here, we investigated the effect of ALAN on sleep behaviour in two closely related songbird species inhabiting the same study area and roosting/breeding in similar nest boxes. We experimentally exposed free-living great tits (Parus major) and blue tits (Cyanistes caeruleus) to artificial light inside their nest boxes and observed changes in their sleep behaviour compared to the previous night when the nest boxes were dark. In line with previous studies, sleep behaviour of both species did not differ under dark conditions. ALAN disrupted sleep in both great and blue tits. However, compared to blue tits, great tits showed more pronounced effects and more aspects of sleep were affected. Light exposed great tits entered the nest boxes and fell asleep later, woke up and exited the nest boxes earlier, and the total sleep amount and sleep percentage were reduced. By contrast, these changes in sleep behaviour were not found in light exposed blue tits. Our field experiment, using exactly the same light manipulation in both species, provides direct evidence that two closely related species respond differently to ALAN, while their sleep behaviour under dark conditions was similar. Our research suggests that findings for one species cannot necessarily be generalised to other species, even closely-related species. Furthermore, species-specific effects could have implications for community dynamics. Copyright © 2017 Elsevier Ltd. All rights reserved.

The importance of terrestrial weathering for climate system modelling on extended timescales: a study with the UVic ESCM

NASA Astrophysics Data System (ADS)

Brault, Marc-Olivier; Matthews, Damon; Mysak, Lawrence

2016-04-01

The chemical erosion of carbonate and silicate rocks is a key process in the global carbon cycle and, through its coupling with calcium carbonate deposition in the ocean, is the primary sink of carbon on geologic timescales. The dynamic interdependence of terrestrial weathering rates with atmospheric temperature and carbon dioxide concentrations is crucial to the regulation of Earth's climate over multi-millennial timescales. However any attempts to develop a modeling context for terrestrial weathering as part of a dynamic climate system are limited, mostly because of the difficulty in adapting the multi-millennial timescales of the implied negative feedback mechanism with those of the atmosphere and ocean. Much of the earlier work on this topic is therefore based on box-model approaches, abandoning spatial variability for the sake of computational efficiency and the possibility to investigate the impact of weathering on climate change over time frames much longer than those allowed by traditional climate system models. As a result we still have but a rudimentary understanding of the chemical weathering feedback mechanism and its effects on ocean biogeochemistry and atmospheric CO2. Here, we introduce a spatially-explicit, rock weathering model into the University of Victoria Earth System Climate Model (UVic ESCM). We use a land map which takes into account a number of different rock lithologies, changes in sea level, as well as an empirical model of the temperature and NPP dependency of weathering rates for the different rock types. We apply this new model to the last deglacial period (c. 21000BP to 13000BP) as well as a future climate change scenario (c. 1800AD to 6000AD+), comparing the results of our 2-D version of the weathering feedback mechanism to simulations using only the box-model parameterizations of Meissner et al. [2012]. These simulations reveal the importance of two-dimensional factors (i.e., changes in sea level and rock type distribution) in the role of the weathering negative feedback mechanism on multi-millennial timescales.

Reviews, Software.

ERIC Educational Resources Information Center

Science Teacher, 1988

1988-01-01

Reviews two computer software packages for use in physical science, physics, and chemistry classes. Includes "Physics of Model Rocketry" for Apple II, and "Black Box" for Apple II and IBM compatible computers. "Black Box" is designed to help students understand the concept of indirect evidence. (CW)

A Statistical Framework for Analyzing Cyber Threats

DTIC Science & Technology

defender cares most about the attacks against certain ports or services). The grey-box statistical framework formulates a new methodology of Cybersecurity ...the design of prediction models. Our research showed that the grey-box framework is effective in predicting cybersecurity situational awareness.

Probability of Decompression Sickness in No-Stop Air Diving

DTIC Science & Technology

2004-12-01

21 Figure 10. VVal-1 8 and StandAir Models .......................................... 22 Figure 11. Comparisons for...recommendations appear in heavy boxes. Information outside the heavy boxes allows comparisons between models. The recommendations are essentially arbitrary and...N2-0 2 Saturation Dives in Humans: DCS Risk and Evidence of a Threshold," Undersea Hyperbaric Medicine, In Press. 15. S. S. Survanshi, E. D. Parker, E

Isolation and characterization of multiple F-box genes linked to the S9- and S10-RNase in apple (Malus × domestica Borkh.).

PubMed

Okada, Kazuma; Moriya, Shigeki; Haji, Takashi; Abe, Kazuyuki

2013-06-01

Using 11 consensus primer pairs designed from S-linked F-box genes of apple and Japanese pear, 10 new F-box genes (MdFBX21 to 30) were isolated from the apple cultivar 'Spartan' (S(9)S(10)). MdFBX21 to 23 and MdFBX24 to 30 were completely linked to the S(9) -RNase and S(10-)RNase, respectively, and showed pollen-specific expression and S-haplotype-specific polymorphisms. Therefore, these 10 F-box genes are good candidates for the pollen determinant of self-incompatibility in apple. Phylogenetic analysis and comparison of deduced amino acid sequences of MdFBX21 to 30 with those of 25 S-linked F-box genes previously isolated from apple showed that a deduced amino acid identity of greater than 88.0 % can be used as the tentative criterion to classify F-box genes into one type. Using this criterion, 31 of 35 F-box genes of apple were classified into 11 types (SFBB1-11). All types included F-box genes derived from S(3-) and S(9-)haplotypes, and seven types included F-box genes derived from S(3-), S(9-), and S(10-)haplotypes. Moreover, comparison of nucleotide sequences of S-RNases and multiple F-box genes among S(3-), S(9-), and S(10-)haplotypes suggested that F-box genes within each type showed high nucleotide identity regardless of the identity of the S-RNase. The large number of F-box genes as candidates for the pollen determinant and the high degree of conservation within each type are consistent with the collaborative non-self-recognition model reported for Petunia. These findings support that the collaborative non-self-recognition system also exists in apple.

Chemical Evolution of Ozone and Its Precursors in Asian Pacific Rim Outflow During TRACE-P

NASA Astrophysics Data System (ADS)

Hamlin, A.; Crawford, J.; Olson, J.; Pippin, M.; Avery, M.; Sachse, G.; Barrick, J.; Blake, D.; Tan, D.; Sandholm, S.; Kondo, Y.; Singh, H.; Eisele, F.; Zondlo, M.; Flocke, F.; Talbot, R.

2002-12-01

During NASA's GTE/TRACE-P (Transport and Chemical Evolution over the Pacific) mission, a widespread stagnant pollution layer was observed between 2 and 4 km over the central Pacific. In this region, high levels of O3 (70~ppbv), CO (210~ppbv), and NOx (130~pptv) were observed. Back trajectories suggest this airmass had been rapidly transported from the Asian coast near the Yellow Sea to the central Pacific where it underwent subsidence. The chemical evolution of ozone and its precursors for this airmass is examined using lagrangian photochemical box model calculations. Simulations are conducted along trajectories which intersect the flight path where predicted mixing ratios are compared to measurements. An analysis of the photochemical processes controlling the cycling of nitrogen oxides and ozone production and destruction during transport will be presented.

Raising the legal drinking age in Maine: impact on traffic accidents among young drivers.

PubMed

Wagenaar, A C

1983-04-01

The minimum legal age for purchase and consumption of alcoholic beverages continues to be a controversial issue in North America as numerous jurisdictions that lowered the legal age in the early 1970s are returning to higher drinking ages. Monthly frequencies of motor vehicle crashes among drivers aged 18-45 in the states of Maine and Pennsylvania from 1972 through 1979 were examined using a multiple time series design. Controlling for the effects of long-term trends, seasonal cycles, and other factors with Box-Jenkins time series models, a significant 17-21% reduction in alcohol-related property damage crash involvement among drivers aged 18-19 is attributable to Maine's increase in drinking age. No demonstrable effect of the raised drinking age on the incidence of injury and fatal crashes was found.

Gray-Box Approach for Thermal Modelling of Buildings for Applications in District Heating and Cooling Networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saurav, Kumar; Chandan, Vikas

District-heating-and-cooling (DHC) systems are a proven energy solution that has been deployed for many years in a growing number of urban areas worldwide. They comprise a variety of technologies that seek to develop synergies between the production and supply of heat, cooling, domestic hot water and electricity. Although the benefits of DHC systems are significant and have been widely acclaimed, yet the full potential of modern DHC systems remains largely untapped. There are several opportunities for development of energy efficient DHC systems, which will enable the effective exploitation of alternative renewable resources, waste heat recovery, etc., in order to increasemore » the overall efficiency and facilitate the transition towards the next generation of DHC systems. This motivated the need for modelling these complex systems. Large-scale modelling of DHC-networks is challenging, as it has several components such as buildings, pipes, valves, heating source, etc., interacting with each other. In this paper, we focus on building modelling. In particular, we present a gray-box methodology for thermal modelling of buildings. Gray-box modelling is a hybrid of data driven and physics based models where, coefficients of the equations from physics based models are learned using data. This approach allows us to capture the dynamics of the buildings more effectively as compared to pure data driven approach. Additionally, this approach results in a simpler models as compared to pure physics based models. We first develop the individual components of the building such as temperature evolution, flow controller, etc. These individual models are then integrated in to the complete gray-box model for the building. The model is validated using data collected from one of the buildings at Lule{\\aa}, a city on the coast of northern Sweden.« less

Assimilating Ferry Box data into the Aegean Sea model

NASA Astrophysics Data System (ADS)

Korres, G.; Ntoumas, M.; Potiris, M.; Petihakis, G.

2014-12-01

Operational monitoring and forecasting of marine environmental conditions is a necessary tool for the effective management and protection of the marine ecosystem. It requires the use of multi-variable real-time measurements combined with advanced physical and ecological numerical models. Towards this, a FerryBox system was originally installed and operated in the route Piraeus-Heraklion in 2003 for one year. Early 2012 the system was upgraded and moved to a new high-speed ferry traveling daily in the same route as before. This route is by large traversing the Cretan Sea being the largest and deepest basin (2500 m) in the south Aegean Sea. The HCMR Ferry Box is today the only one in the Mediterranean and thus it can be considered as a pilot case. The analysis of FerryBox SST and SSS in situ data revealed the presence of important regional and sub-basin scale physical phenomena, such as wind-driven coastal upwelling and the presence of a mesoscale cyclone to the north of Crete. In order to assess the impact of the FerryBox SST data in constraining the Aegean Sea hydrodynamic model which is part of the POSEIDON forecasting system, the in situ data were assimilated using an advanced multivariate assimilation scheme based on the Singular Evolutive Extended Kalman (SEEK) filter, a simplified square-root extended Kalman filter that operates with low-rank error covariance matrices as a way to reduce the computational burden. Thus during the period mid-August 2012-mid January 2013 in addition to the standard assimilating parameters, daily SST data along the ferryboat route from Piraeus to Heraklion were assimilated into the model. Inter-comparisons between the control run of the system (model run that uses only the standard data set of observations) and the experiment where the observational data set is augmented with the FerryBox SST data produce interesting results. Apart from the improvement of the SST error, the additional assimilation of daily of FerryBox SST observations is found to have a significant impact on the correct representation of the dynamical dipole in the central Cretan Sea and other dynamic features of the South Aegean Sea, which is then depicted in the decrease of the basin wide SSH RMS error.

Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression

PubMed Central

Sharma, Manju; Dearth, Andrea; Smith, Benjamin; Braun, Robert E.

2015-01-01

The Y-box proteins YBX2 and YBX3 bind RNA and DNA and are required for metazoan development and fertility. However, possible functional redundancy between YBX2 and YBX3 has prevented elucidation of their molecular function as RNA masking proteins and identification of their target RNAs. To investigate possible functional redundancy between YBX2 and YBX3, we attempted to construct Ybx2 -/- ;Ybx3 -/- double mutants using a previously reported Ybx2 -/- model and a newly generated global Ybx3 -/- model. Loss of YBX3 resulted in reduced male fertility and defects in spermatid differentiation. However, homozygous double mutants could not be generated as haploinsufficiency of both Ybx2 and Ybx3 caused sterility characterized by extensive defects in spermatid differentiation. RNA sequence analysis of mRNP and polysome occupancy in single and compound Ybx2/3 heterozygotes revealed loss of translational repression almost exclusively in the compound Ybx2/3 heterozygotes. RNAseq analysis also demonstrated that Y-box protein dose-dependent loss of translational regulation was inversely correlated with the presence of a Y box recognition target sequence, suggesting that Y box proteins bind RNA hierarchically to modulate translation in a range of targets. PMID:26646932

Three-dimensional Model of Tissue and Heavy Ions Effects

NASA Technical Reports Server (NTRS)

Ponomarev, Artem L.; Sundaresan, Alamelu; Huff, Janice L.; Cucinotta, Francis A.

2007-01-01

A three-dimensional tissue model was incorporated into a new Monte Carlo algorithm that simulates passage of heavy ions in a tissue box . The tissue box was given as a realistic model of tissue based on confocal microscopy images. The action of heavy ions on the cellular matrix for 2- or 3-dimensional cases was simulated. Cells were modeled as a cell culture monolayer in one example, where the data were taken directly from microscopy (2-d cell matrix), and as a multi-layer obtained from confocal microscopy (3-d case). Image segmentation was used to identify cells with precise areas/volumes in an irradiated cell culture monolayer, and slices of tissue with many cell layers. The cells were then inserted into the model box of the simulated physical space pixel by pixel. In the case of modeled tissues (3-d), the tissue box had periodic boundary conditions imposed, which extrapolates the technique to macroscopic volumes of tissue. For the real tissue (3-d), specific spatial patterns for cell apoptosis and necrosis are expected. The cell patterns were modeled based on action cross sections for apoptosis and necrosis estimated from current experimental data. A spatial correlation function indicating a higher spatial concentration of damaged cells from heavy ions relative to the low-LET radiation cell damage pattern is presented. The spatial correlation effects among necrotic cells can help studying microlesions in organs, and probable effects of directionality of heavy ion radiation on epithelium and endothelium.

Increasing the realism of a laparoscopic box trainer: a simple, inexpensive method.

PubMed

Hull, Louise; Kassab, Eva; Arora, Sonal; Kneebone, Roger

2010-01-01

Simulation-based training in medical education is increasing. Realism is an integral element of creating an engaging, effective training environment. Although physical trainers offer a low-cost alternative to expensive virtual reality (VR) simulators, many lack in realism. The aim of this research was to enhance the realism of a laparoscopic box trainer by using a simple, inexpensive method. Digital images of the abdominal cavity were captured from a VR simulator. The images were printed onto a laminated card that lined the bottom and sides of the box-trainer cavity. The standard black neoprene material that encloses the abdominal cavity was replaced with a skin-colored silicon model. The realism of the modified box trainer was assessed by surgeons, using quantitative and qualitative methodologies. Results suggest that the modified box trainer was more realistic than a standard box trainer alone. Incorporating this technique in the training of laparoscopic skills is an inexpensive means of emulating surgical reality that may enhance the engagement of the learner in simulation.

Automatic load forecasting. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nelson, D.J.; Vemuri, S.

A method which lends itself to on-line forecasting of hourly electric loads is presented and the results of its use are compared to models developed using the Box-Jenkins method. The method consists of processing the historical hourly loads with a sequential least-squares estimator to identify a finite order autoregressive model which in turn is used to obtain a parsimonious autoregressive-moving average model. A procedure is also defined for incorporating temperature as a variable to improve forecasts where loads are temperature dependent. The method presented has several advantages in comparison to the Box-Jenkins method including much less human intervention and improvedmore » model identification. The method has been tested using three-hourly data from the Lincoln Electric System, Lincoln, Nebraska. In the exhaustive analyses performed on this data base this method produced significantly better results than the Box-Jenkins method. The method also proved to be more robust in that greater confidence could be placed in the accuracy of models based upon the various measures available at the identification stage.« less

Projected Applications of a "Weather in a Box" Computing System at the NASA Short-Term Prediction Research and Transition (SPoRT) Center

NASA Technical Reports Server (NTRS)

Jedlovec, Gary J.; Molthan, Andrew; Zavodsky, Bradley T.; Case, Jonathan L.; LaFontaine, Frank J.; Srikishen, Jayanthi

2010-01-01

The NASA Short-term Prediction Research and Transition Center (SPoRT)'s new "Weather in a Box" resources will provide weather research and forecast modeling capabilities for real-time application. Model output will provide additional forecast guidance and research into the impacts of new NASA satellite data sets and software capabilities. By combining several research tools and satellite products, SPoRT can generate model guidance that is strongly influenced by unique NASA contributions.

Exposure to sub-concussive head injury in boxing and other sports.

PubMed

Erlanger, David M

2015-01-01

Current characterizations of chronic traumatic brain injury (CTBI) in boxing, football and other sports are reviewed in the context of the history of research on sub-concussive brain trauma in athletes. The utility of exposure models for understanding CTBI in boxers is examined and concerns regarding the paucity of findings supportive of an exposure model for CTBI in football players are discussed. Recommendations for development of exposure models for sport-specific phenotypic characterizations of CTBI are presented.

The eastern box turtle at the Patuxent Wildlife Research Center 1940s to the present: another view

USGS Publications Warehouse

Henry, P.F.P.

2003-01-01

Several long-term mark recapture studies have been conducted on box turtles (Terrapene c. carolina) providing valuable information on life span, basic demography, home range, and apparent effects of environmental changes on box turtle survival. One of the longest studied populations was first marked in 1942 on the Patuxent Wildlife Research Center in Maryland, and has been surveyed every 10 years until 1995. The age structure and gender ratio of these turtles in the field may support differential habitat use and survival estimates. A few of the turtles first marked during the 1945 study are still observed throughout the Center. Data collected from turtles marked in the more upland habitats during 1985-2002 indicate a younger age class distribution than that observed in the more protected biota of the bottomland floodplain study area. Extrapolating ages of turtles described in data collected throughout the long-term study, it was estimated that turtles, both males and females, can show reproduction-intent behaviors at ages greater than 54 years old. It is suggested that count data collection be continued on a more frequent cycle, extending over a larger part of the Center.

[Optimization of Formulation and Process of Paclitaxel PEGylated Liposomes by Box-Behnken Response Surface Methodology].

PubMed

Shi, Ya-jun; Zhang, Xiao-feil; Guo, Qiu-ting

2015-12-01

To develop a procedure for preparing paclitaxel encapsulated PEGylated liposomes. The membrane hydration followed extraction method was used to prepare PEGylated liposomes. The process and formulation variables were optimized by "Box-Behnken Design (BBD)" of response surface methodology (RSM) with the amount of Soya phosphotidylcholine (SPC) and PEG2000-DSPE as well as the rate of SPC to drug as independent variables and entrapment efficiency as dependent variables for optimization of formulation variables while temperature, pressure and cycle times as independent variables and particle size and polydispersion index as dependent variables for process variables. The optimized liposomal formulation was characterized for particle size, Zeta potential, morphology and in vitro drug release. For entrapment efficiency, particle size, polydispersion index, Zeta potential, and in vitro drug release of PEGylated liposomes was found to be 80.3%, (97.15 ± 14.9) nm, 0.117 ± 0.019, (-30.3 ± 3.7) mV, and 37.4% in 24 h, respectively. The liposomes were found to be small, unilamellar and spherical with smooth surface as seen in transmission electron microscopy. The Box-Behnken response surface methodology facilitates the formulation and optimization of paclitaxel PEGylated liposomes.

Humber-in-a-Box : Gamification to Communicate Coastal Flood Risk in the Face of Rising Seas

NASA Astrophysics Data System (ADS)

Skinner, C. J.; van Rij, J. D.

2015-12-01

Humber-in-a-Box is an immersive visualisation of the Humber Estuary (on the east coast of the UK), designed to communicate coastal flood risk in the face of rising seas. It is designed for use in a busy festival-like setting. The user views the environment via an Oculus Rift Virtual Reality (VR) headset and is able to explore using an XBOX controller. A live simulation of tidal flows on a modelled version of the estuary can be viewed on a box in the centre of a virtual room. Using the controller, the user is able to raise sea levels and see what happens as the tide levels adjust. Humber-in-a-Box uses a numerical model built with data used for published research. The hydraulic component of the CAESAR-Lisflood model code was incorporated into the UNITY-3D gaming engine, and the model uses recorded tidal stage data, bathymetry and elevations to build the virtual environment and drive the simulation. Present day flood defences are incorporated into the model, and in conjunction with modelling tidal flows, this provides a better representation of future flood risk than simpler linear models. The user is able to raise and lower sea levels between -10 m and 100 m, in 1m increments, and can reset the simulation to present day levels with one button click. Humber-in-a-Box has been showcased at several outreach events and has proven to be very popular and effective in an environment where time with each user is pressured, and information needs to exchange quickly. It has also been used in teaching at Undergraduate level, although the full potential of this is yet to be explored. A non-interactive version of the application is available on YouTube which is designed for use with Google Cardboard and similar kit.

Impact of simulated herbivory on water relations of aspen (Populus tremuloides) seedlings: the role of new tissue in the hydraulic conductivity recovery cycle

Treesearch

David A. Galvez; M.T. Tyree

2009-01-01

Physiological mechanisms behind plant-herbivore interactions are commonly approached as input-output systems where the role of plant physiology is viewed as a black box. Studies evaluating impacts of defoliation on plant physiology have mostly focused on changes in photosynthesis while the overall impact on plant water relations is largely unknown. Stem hydraulic...

Time cycle analysis and simulation of material flow in MOX process layout

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chakraborty, S.; Saraswat, A.; Danny, K.M.

The (U,Pu)O{sub 2} MOX fuel is the driver fuel for the upcoming PFBR (Prototype Fast Breeder Reactor). The fuel has around 30% PuO{sub 2}. The presence of high percentages of reprocessed PuO{sub 2} necessitates the design of optimized fuel fabrication process line which will address both production need as well as meet regulatory norms regarding radiological safety criteria. The powder pellet route has highly unbalanced time cycle. This difficulty can be overcome by optimizing process layout in terms of equipment redundancy and scheduling of input powder batches. Different schemes are tested before implementing in the process line with the helpmore » of a software. This software simulates the material movement through the optimized process layout. The different material processing schemes have been devised and validity of the schemes are tested with the software. Schemes in which production batches are meeting at any glove box location are considered invalid. A valid scheme ensures adequate spacing between the production batches and at the same time it meets the production target. This software can be further improved by accurately calculating material movement time through glove box train. One important factor is considering material handling time with automation systems in place.« less

Solar exposure of sunglasses: aging test display

NASA Astrophysics Data System (ADS)

Gomes, L. M.; Masili, M.; Momesso, G. A.; Silva, F. M.; Ventura, L.

2018-02-01

In previous studies conducted in our lab, we have been investigating the aging effects on sunglasses. Some preliminary results have been indicating changes on the UV protection on the lenses. Therefore, besides irradiating the samples with a proper sun simulator, we have also been concerned on exposing the sunglasses to natural sun for further investigation and comparisons. Thus, this project aims expose the lenses for 24 months using an automatic solar exposition station, which consists of a series of 5 panels, housing 60 lenses arranged in the vertical position to the ground, which will be irradiated by the sun from sunrise until sunset. A box structure moves along a rail, driven by a motor and then the lenses are exposed. Humidity, rain, temperature, dust and UV index sensors, as well as a video camera are part of the system. The exposure time and UV index will be recorded and automatic opening or closing the box system may also be controlled by a PC using a webserver. The system was tested in working conditions, i.e. exposed to the weather and being automatically controlled, for five months to certifying that the samples could be exposed without being damaged. The next step of the research is to start the exposition cycles and to measure the expected transmittance variations after each cycle.

Beyond ubiquitination: the atypical functions of Fbxo7 and other F-box proteins.

PubMed

Nelson, David E; Randle, Suzanne J; Laman, Heike

2013-10-09

F-box proteins (FBPs) are substrate-recruiting subunits of Skp1-cullin1-FBP (SCF)-type E3 ubiquitin ligases. To date, 69 FBPs have been identified in humans, but ubiquitinated substrates have only been identified for a few, with the majority of FBPs remaining 'orphans'. In recent years, a growing body of work has identified non-canonical, SCF-independent roles for about 12% of the human FBPs. These atypical FBPs affect processes as diverse as transcription, cell cycle regulation, mitochondrial dynamics and intracellular trafficking. Here, we provide a general review of FBPs, with a particular emphasis on these expanded functions. We review Fbxo7 as an exemplar of this special group as it has well-defined roles in both SCF and non-SCF complexes. We review its function as a cell cycle regulator, via its ability to stabilize p27 protein and Cdk6 complexes, and as a proteasome regulator, owing to its high affinity binding to PI31. We also highlight recent advances in our understanding of Fbxo7 function in Parkinson's disease, where it functions in the regulation of mitophagy with PINK1 and Parkin. We postulate that a few extraordinary FBPs act as platforms that seamlessly segue their canonical and non-canonical functions to integrate different cellular pathways and link their regulation.

Identification and Characterization of Alternative Promoters, Transcripts and Protein Isoforms of Zebrafish R2 Gene

PubMed Central

Shang, Hanqiao; Li, Qing; Feng, Guohui; Cui, Zongbin

2011-01-01

Ribonucleotide reductase (RNR) is the rate-limiting enzyme in the de novo synthesis of deoxyribonucleoside triphosphates. Expression of RNR subunits is closely associated with DNA replication and repair. Mammalian RNR M2 subunit (R2) functions exclusively in DNA replication of normal cells due to its S phase-specific expression and late mitotic degradation. Herein, we demonstrate the control of R2 expression through alternative promoters, splicing and polyadenylation sites in zebrafish. Three functional R2 promoters were identified to generate six transcript variants with distinct 5′ termini. The proximal promoter contains a conserved E2F binding site and two CCAAT boxes, which are crucial for the transcription of R2 gene during cell cycle. Activity of the distal promoter can be induced by DNA damage to generate four transcript variants through alternative splicing. In addition, two novel splice variants were found to encode distinct N-truncated R2 isoforms containing residues for enzymatic activity but no KEN box essential for its proteolysis. These two N-truncated R2 isoforms remained in the cytoplasm and were able to interact with RNR M1 subunit (R1). Thus, our results suggest that multilayered mechanisms control the differential expression and function of zebrafish R2 gene during cell cycle and under genotoxic stress. PMID:21887375

Identification and characterization of alternative promoters, transcripts and protein isoforms of zebrafish R2 gene.

PubMed

Shang, Hanqiao; Li, Qing; Feng, Guohui; Cui, Zongbin

2011-01-01

Ribonucleotide reductase (RNR) is the rate-limiting enzyme in the de novo synthesis of deoxyribonucleoside triphosphates. Expression of RNR subunits is closely associated with DNA replication and repair. Mammalian RNR M2 subunit (R2) functions exclusively in DNA replication of normal cells due to its S phase-specific expression and late mitotic degradation. Herein, we demonstrate the control of R2 expression through alternative promoters, splicing and polyadenylation sites in zebrafish. Three functional R2 promoters were identified to generate six transcript variants with distinct 5' termini. The proximal promoter contains a conserved E2F binding site and two CCAAT boxes, which are crucial for the transcription of R2 gene during cell cycle. Activity of the distal promoter can be induced by DNA damage to generate four transcript variants through alternative splicing. In addition, two novel splice variants were found to encode distinct N-truncated R2 isoforms containing residues for enzymatic activity but no KEN box essential for its proteolysis. These two N-truncated R2 isoforms remained in the cytoplasm and were able to interact with RNR M1 subunit (R1). Thus, our results suggest that multilayered mechanisms control the differential expression and function of zebrafish R2 gene during cell cycle and under genotoxic stress.

The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.

PubMed

García-Cruz, Karla V; García-Ponce, Berenice; Garay-Arroyo, Adriana; Sanchez, María De La Paz; Ugartechea-Chirino, Yamel; Desvoyes, Bénédicte; Pacheco-Escobedo, Mario A; Tapia-López, Rosalinda; Ransom-Rodríguez, Ivan; Gutierrez, Crisanto; Alvarez-Buylla, Elena R

2016-07-29

Morphogenesis depends on the concerted modulation of cell proliferation and differentiation. Such modulation is dynamically adjusted in response to various external and internal signals via complex transcriptional regulatory networks that mediate between such signals and regulation of cell-cycle and cellular responses (proliferation, growth, differentiation). In plants, which are sessile, the proliferation/differentiation balance is plastically adjusted during their life cycle and transcriptional networks are important in this process. MADS-box genes are key developmental regulators in eukaryotes, but their role in cell proliferation and differentiation modulation in plants remains poorly studied. We characterize the XAL1 loss-of-function xal1-2 allele and overexpression lines using quantitative cellular and cytometry analyses to explore its role in cell cycle, proliferation, stem-cell patterning and transition to differentiation. We used quantitative PCR and cellular markers to explore if XAL1 regulates cell-cycle components and PLETHORA1 (PLT1) gene expression, as well as confocal microscopy to analyse stem-cell niche organization. We previously showed that XAANTAL1 (XAL1/AGL12) is necessary for Arabidopsis root development as a promoter of cell proliferation in the root apical meristem. Here, we demonstrate that XAL1 positively regulates the expression of PLT1 and important components of the cell cycle: CYCD3;1, CYCA2;3, CYCB1;1, CDKB1;1 and CDT1a In addition, we show that xal1-2 mutant plants have a premature transition to differentiation with root hairs appearing closer to the root tip, while endoreplication in these plants is partially compromised. Coincidently, the final size of cortex cells in the mutant is shorter than wild-type cells. Finally, XAL1 overexpression-lines corroborate that this transcription factor is able to promote cell proliferation at the stem-cell niche. XAL1 seems to be an important component of the networks that modulate cell proliferation/differentiation transition and stem-cell proliferation during Arabidopsis root development; it also regulates several cell-cycle components. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Evaluation of tracking accuracy of the CyberKnife system using a webcam and printed calibrated grid.

PubMed

Sumida, Iori; Shiomi, Hiroya; Higashinaka, Naokazu; Murashima, Yoshikazu; Miyamoto, Youichi; Yamazaki, Hideya; Mabuchi, Nobuhisa; Tsuda, Eimei; Ogawa, Kazuhiko

2016-03-08

Tracking accuracy for the CyberKnife's Synchrony system is commonly evaluated using a film-based verification method. We have evaluated a verification system that uses a webcam and a printed calibrated grid to verify tracking accuracy over three different motion patterns. A box with an attached printed calibrated grid and four fiducial markers was attached to the motion phantom. A target marker was positioned at the grid's center. The box was set up using the other three markers. Target tracking accuracy was evaluated under three conditions: 1) stationary; 2) sinusoidal motion with different amplitudes of 5, 10, 15, and 20 mm for the same cycle of 4 s and different cycles of 2, 4, 6, and 8 s with the same amplitude of 15 mm; and 3) irregular breathing patterns in six human volunteers breathing normally. Infrared markers were placed on the volunteers' abdomens, and their trajectories were used to simulate the target motion. All tests were performed with one-dimensional motion in craniocaudal direction. The webcam captured the grid's motion and a laser beam was used to simulate the CyberKnife's beam. Tracking error was defined as the difference between the grid's center and the laser beam. With a stationary target, mean tracking error was measured at 0.4 mm. For sinusoidal motion, tracking error was less than 2 mm for any amplitude and breathing cycle. For the volunteers' breathing patterns, the mean tracking error range was 0.78-1.67 mm. Therefore, accurate lesion targeting requires individual quality assurance for each patient.

Effects of eustatic sea-level change, ocean dynamics, and nutrient utilization on atmospheric pCO2 and seawater composition over the last 130 000 years: a model study

NASA Astrophysics Data System (ADS)

Wallmann, K.; Schneider, B.; Sarnthein, M.

2016-02-01

We have developed and employed an Earth system model to explore the forcings of atmospheric pCO2 change and the chemical and isotopic evolution of seawater over the last glacial cycle. Concentrations of dissolved phosphorus (DP), reactive nitrogen, molecular oxygen, dissolved inorganic carbon (DIC), total alkalinity (TA), 13C-DIC, and 14C-DIC were calculated for 24 ocean boxes. The bi-directional water fluxes between these model boxes were derived from a 3-D circulation field of the modern ocean (Opa 8.2, NEMO) and tuned such that tracer distributions calculated by the box model were consistent with observational data from the modern ocean. To model the last 130 kyr, we employed records of past changes in sea-level, ocean circulation, and dust deposition. According to the model, about half of the glacial pCO2 drawdown may be attributed to marine regressions. The glacial sea-level low-stands implied steepened ocean margins, a reduced burial of particulate organic carbon, phosphorus, and neritic carbonate at the margin seafloor, a decline in benthic denitrification, and enhanced weathering of emerged shelf sediments. In turn, low-stands led to a distinct rise in the standing stocks of DIC, TA, and nutrients in the global ocean, promoted the glacial sequestration of atmospheric CO2 in the ocean, and added 13C- and 14C-depleted DIC to the ocean as recorded in benthic foraminifera signals. The other half of the glacial drop in pCO2 was linked to inferred shoaling of Atlantic meridional overturning circulation and more efficient utilization of nutrients in the Southern Ocean. The diminished ventilation of deep water in the glacial Atlantic and Southern Ocean led to significant 14C depletions with respect to the atmosphere. According to our model, the deglacial rapid and stepwise rise in atmospheric pCO2 was induced by upwelling both in the Southern Ocean and subarctic North Pacific and promoted by a drop in nutrient utilization in the Southern Ocean. The deglacial sea-level rise led to a gradual decline in nutrient, DIC, and TA stocks, a slow change due to the large size and extended residence times of dissolved chemical species in the ocean. Thus, the rapid deglacial rise in pCO2 can be explained by fast changes in ocean dynamics and nutrient utilization whereas the gradual pCO2 rise over the Holocene may be linked to the slow drop in nutrient and TA stocks that continued to promote an ongoing CO2 transfer from the ocean into the atmosphere.

Status Report on Medical Materiel Items Tested and Evaluated for Use in the USAF Aeromedical Evacuation System.

DTIC Science & Technology

1986-06-01

P.O. Box 2007 3101 E. Alejo Rd. Palm Springs, CA 92262 Telephone: (619) 327-1571 Date Evaluated June 1979 Summary The BABYbird Ventilator, Model 5900...air. Procurement Manufacturer 15 Product and Manufacturer Infant AIRbird Resuscitator Medical Products Oivision/3M P.O. Box 2007 3101 E. Alejo Rd. Palm...Silicone Bag Medical Products Division/3M P.O. Box 20073101 E. Alejo Rd Palm Springs, CA 92262 Telephone: (619) 327-1571 Date Evaluated July 1978 Sumary

Proto-oncogene FBI-1 (Pokemon/ZBTB7A) represses transcription of the tumor suppressor Rb gene via binding competition with Sp1 and recruitment of co-repressors.

PubMed

Jeon, Bu-Nam; Yoo, Jung-Yoon; Choi, Won-Il; Lee, Choong-Eun; Yoon, Ho-Geun; Hur, Man-Wook

2008-11-28

FBI-1 (also called Pokemon/ZBTB7A) is a BTB/POZ-domain Krüppel-like zinc-finger transcription factor. Recently, FBI-1 was characterized as a proto-oncogenic protein, which represses tumor suppressor ARF gene transcription. The expression of FBI-1 is increased in many cancer tissues. We found that FBI-1 potently represses transcription of the Rb gene, a tumor suppressor gene important in cell cycle arrest. FBI-1 binds to four GC-rich promoter elements (FREs) located at bp -308 to -188 of the Rb promoter region. The Rb promoter also contains two Sp1 binding sites: GC-box 1 (bp -65 to -56) and GC-box 2 (bp -18 to -9), the latter of which is also bound by FBI-1. We found that FRE3 (bp -244 to -236) is also a Sp1 binding element. FBI-1 represses transcription of the Rb gene not only by binding to the FREs, but also by competing with Sp1 at the GC-box 2 and the FRE3. By binding to the FREs and/or the GC-box, FBI-1 represses transcription of the Rb gene through its POZ-domain, which recruits a co-repressor-histone deacetylase complex and deacetylates histones H3 and H4 at the Rb gene promoter. FBI-1 inhibits C2C12 myoblast cell differentiation by repressing Rb gene expression.

Static aeroelastic analysis of wings using Euler/Navier-Stokes equations coupled with improved wing-box finite element structures

NASA Technical Reports Server (NTRS)

Guruswamy, Guru P.; MacMurdy, Dale E.; Kapania, Rakesh K.

1994-01-01

Strong interactions between flow about an aircraft wing and the wing structure can result in aeroelastic phenomena which significantly impact aircraft performance. Time-accurate methods for solving the unsteady Navier-Stokes equations have matured to the point where reliable results can be obtained with reasonable computational costs for complex non-linear flows with shock waves, vortices and separations. The ability to combine such a flow solver with a general finite element structural model is key to an aeroelastic analysis in these flows. Earlier work involved time-accurate integration of modal structural models based on plate elements. A finite element model was developed to handle three-dimensional wing boxes, and incorporated into the flow solver without the need for modal analysis. Static condensation is performed on the structural model to reduce the structural degrees of freedom for the aeroelastic analysis. Direct incorporation of the finite element wing-box structural model with the flow solver requires finding adequate methods for transferring aerodynamic pressures to the structural grid and returning deflections to the aerodynamic grid. Several schemes were explored for handling the grid-to-grid transfer of information. The complex, built-up nature of the wing-box complicated this transfer. Aeroelastic calculations for a sample wing in transonic flow comparing various simple transfer schemes are presented and discussed.

75 FR 67637 - Airworthiness Directives; The Boeing Company Model 737-700, -700C, -800, and -900ER Series...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-03

... numbers of the crew oxygen mask stowage box units; and replacement of the crew oxygen mask stowage box unit with a new crew oxygen mask stowage unit, if necessary. This proposed AD results [[Page 67638

Distributed coaxial cable crack sensors for crack mapping in RC

NASA Astrophysics Data System (ADS)

Greene, Gary G.; Belarbi, Abdeldjelil; Chen, Genda; McDaniel, Ryan

2005-05-01

New type of distributed coaxial cable sensors for health monitoring of large-scale civil infrastructure was recently proposed and developed by the authors. This paper shows the results and performance of such sensors mounted on near surface of two flexural beams and a large scale reinforced concrete box girder that was subjected to twenty cycles of combined shear and torsion. The main objectives of this health monitoring study was to correlate the sensor's response to strain in the member, and show that magnitude of the signal's reflection coefficient is related to increases in applied load, repeated cycles, cracking, crack mapping, and yielding. The effect of multiple adjacent cracks, and signal loss was also investigated.

The cunning little vixen: Foxo and the cycle of life and death.

PubMed

Hedrick, Stephen M

2009-10-01

A screen for increased longevity in Caenorhabditis elegans has identified a transcription factor that programs cells for resistance to oxidative stress, DNA repair and cell cycle control. The mammalian orthologs of this factor are referred to as 'Foxo' for 'Forkhead box', with the second 'o' in the name denoting a subfamily of four members related by sequence. This family of factors is regulated by growth factors, oxidative stress or nutrient deprivation. Thus, it might readily control the inflammatory conflagration associated with infection-driven lymphocyte proliferation. Surprisingly, the first insights into Foxo-mediated immune regulation have instead revealed direct control of highly specialized genes of the adaptive immune system.

Selective ultrasound-enhanced enzymatic hydrolysis of oleuropein to its aglycon in olive (Olea europaea L.) leaf extracts.

PubMed

Delgado-Povedano, María Del Mar; Priego-Capote, Feliciano; Luque de Castro, María Dolores

2017-04-01

Hydrolysis of oleuropein, the main phenol in olive (Olea europaea L.) leaf extracts, to oleuropein aglycon and other subsequent products in the hydrolytic pathway can be catalyzed by different enzymes. Three of the most used hydrolases were assayed to catalyze the process, and β-glucosidase from Aspergillus niger was selected. Acceleration of the enzymatic hydrolysis by ultrasound (US) was studied using a Box-Behnken design (duty cycle, amplitude, cycle time) and an oleuropein standard, and the optimum US conditions for achieving maximum yield of oleuropein aglycon were 0.5s/s duty cycle, 50% amplitude and 45s cycle. The method was applied to obtain oleuropein aglycon from commercial and laboratory extracts from olive leaves, which may have a pharmacological use as deduced by its healthy properties. The kinetics of the US-assisted enzymatic hydrolysis was monitored by analysis of the target compounds using liquid chromatography-tandem mass spectrometry. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Ubiquitin Ligase SCF(Ucc1) Acts as a Metabolic Switch for the Glyoxylate Cycle.

PubMed

Nakatsukasa, Kunio; Nishimura, Takashi; Byrne, Stuart D; Okamoto, Michiyo; Takahashi-Nakaguchi, Azusa; Chibana, Hiroji; Okumura, Fumihiko; Kamura, Takumi

2015-07-02

Despite the crucial role played by the glyoxylate cycle in the virulence of pathogens, seed germination in plants, and sexual development in fungi, we still have much to learn about its regulation. Here, we show that a previously uncharacterized SCF(Ucc1) ubiquitin ligase mediates proteasomal degradation of citrate synthase in the glyoxylate cycle to maintain metabolic homeostasis in glucose-grown cells. Conversely, transcription of the F box subunit Ucc1 is downregulated in C2-compound-grown cells, which require increased metabolic flux for gluconeogenesis. Moreover, in vitro analysis demonstrates that oxaloacetate regenerated through the glyoxylate cycle induces a conformational change in citrate synthase and inhibits its recognition and ubiquitination by SCF(Ucc1), suggesting the existence of an oxaloacetate-dependent positive feedback loop that stabilizes citrate synthase. We propose that SCF(Ucc1)-mediated regulation of citrate synthase acts as a metabolic switch for the glyoxylate cycle in response to changes in carbon source, thereby ensuring metabolic versatility and flexibility. Copyright © 2015 Elsevier Inc. All rights reserved.

A GIS-based multi-source and multi-box modeling approach (GMSMB) for air pollution assessment--a North American case study.

PubMed

Wang, Bao-Zhen; Chen, Zhi

2013-01-01

This article presents a GIS-based multi-source and multi-box modeling approach (GMSMB) to predict the spatial concentration distributions of airborne pollutant on local and regional scales. In this method, an extended multi-box model combined with a multi-source and multi-grid Gaussian model are developed within the GIS framework to examine the contributions from both point- and area-source emissions. By using GIS, a large amount of data including emission sources, air quality monitoring, meteorological data, and spatial location information required for air quality modeling are brought into an integrated modeling environment. It helps more details of spatial variation in source distribution and meteorological condition to be quantitatively analyzed. The developed modeling approach has been examined to predict the spatial concentration distribution of four air pollutants (CO, NO(2), SO(2) and PM(2.5)) for the State of California. The modeling results are compared with the monitoring data. Good agreement is acquired which demonstrated that the developed modeling approach could deliver an effective air pollution assessment on both regional and local scales to support air pollution control and management planning.

Short-term forecasts gain in accuracy. [Regression technique using ''Box-Jenkins'' analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

Box-Jenkins time-series models offer accuracy for short-term forecasts that compare with large-scale macroeconomic forecasts. Utilities need to be able to forecast peak demand in order to plan their generating, transmitting, and distribution systems. This new method differs from conventional models by not assuming specific data patterns, but by fitting available data into a tentative pattern on the basis of auto-correlations. Three types of models (autoregressive, moving average, or mixed autoregressive/moving average) can be used according to which provides the most appropriate combination of autocorrelations and related derivatives. Major steps in choosing a model are identifying potential models, estimating the parametersmore » of the problem, and running a diagnostic check to see if the model fits the parameters. The Box-Jenkins technique is well suited for seasonal patterns, which makes it possible to have as short as hourly forecasts of load demand. With accuracy up to two years, the method will allow electricity price-elasticity forecasting that can be applied to facility planning and rate design. (DCK)« less

Variability of Stratospheric Reactive Nitrogen and Ozone Related to the QBO

NASA Astrophysics Data System (ADS)

Park, M.; Randel, W. J.; Kinnison, D. E.; Bourassa, A. E.; Degenstein, D. A.; Roth, C. Z.; McLinden, C. A.; Sioris, C. E.; Livesey, N. J.; Santee, M. L.

2017-09-01

The stratospheric quasi-biennial oscillation (QBO) dominates interannual variability of dynamical variables and trace constituents in the tropical stratosphere and provides a natural experiment to test circulation-chemistry interactions. This work quantifies the relationships among ozone (O3), reactive nitrogen (NOy), and source gas N2O, and their links to the QBO, based on satellite constituent measurements and meteorological data spanning 2005-2014 (over four QBO cycles). Data include O3, HNO3, and N2O from the Aura Microwave Limb Sounder and an NOx proxy derived from Optical Spectrograph and Infrared Imager System NO2 measurements combined with a photochemical box model (= NOx*). Results are compared to simulations from the Whole Atmosphere Community Climate Model, version 4 incorporating a QBO circulation nudged to assimilated winds. Cross correlations and composites with respect to the QBO phase show coherent 180° out-of-phase relationships between NOy and N2O throughout the stratosphere, with the NOx/HNO3 ratio increasing with altitude. The anomalies in NOy species propagate coherently downward with the QBO. Ozone is anticorrelated with reactive nitrogen in the middle stratosphere above 28 km due to NOx control of ozone catalytic loss cycles. Quantitative comparisons of nitrogen partitioning and O3 sensitivity to NOx show good overall agreement between satellite observations and model results (suggesting closure of the NOy budget), although the model results show larger (up to 20%) N2O, NOx, and O3 variations near 35 km compared to observations. These analyses serve to assess the consistency of diverse satellite-based data sets and also to evaluate nitrogen partitioning and NOx-dependent ozone chemistry in the global model.

A Web Application For Visualizing Empirical Models of the Space-Atmosphere Interface Region: AtModWeb

NASA Astrophysics Data System (ADS)

Knipp, D.; Kilcommons, L. M.; Damas, M. C.

2015-12-01

We have created a simple and user-friendly web application to visualize output from empirical atmospheric models that describe the lower atmosphere and the Space-Atmosphere Interface Region (SAIR). The Atmospheric Model Web Explorer (AtModWeb) is a lightweight, multi-user, Python-driven application which uses standard web technology (jQuery, HTML5, CSS3) to give an in-browser interface that can produce plots of modeled quantities such as temperature and individual species and total densities of neutral and ionized upper-atmosphere. Output may be displayed as: 1) a contour plot over a map projection, 2) a pseudo-color plot (heatmap) which allows visualization of a variable as a function of two spatial coordinates, or 3) a simple line plot of one spatial coordinate versus any number of desired model output variables. The application is designed around an abstraction of an empirical atmospheric model, essentially treating the model code as a black box, which makes it simple to add additional models without modifying the main body of the application. Currently implemented are the Naval Research Laboratory NRLMSISE00 model for neutral atmosphere and the International Reference Ionosphere (IRI). These models are relevant to the Low Earth Orbit environment and the SAIR. The interface is simple and usable, allowing users (students and experts) to specify time and location, and choose between historical (i.e. the values for the given date) or manual specification of whichever solar or geomagnetic activity drivers are required by the model. We present a number of use-case examples from research and education: 1) How does atmospheric density between the surface and 1000 km vary with time of day, season and solar cycle?; 2) How do ionospheric layers change with the solar cycle?; 3 How does the composition of the SAIR vary between day and night at a fixed altitude?

Connecting spatial and temporal scales of tropical precipitation in observations and the MetUM-GA6

NASA Astrophysics Data System (ADS)

Martin, Gill M.; Klingaman, Nicholas P.; Moise, Aurel F.

2017-01-01

This study analyses tropical rainfall variability (on a range of temporal and spatial scales) in a set of parallel Met Office Unified Model (MetUM) simulations at a range of horizontal resolutions, which are compared with two satellite-derived rainfall datasets. We focus on the shorter scales, i.e. from the native grid and time step of the model through sub-daily to seasonal, since previous studies have paid relatively little attention to sub-daily rainfall variability and how this feeds through to longer scales. We find that the behaviour of the deep convection parametrization in this model on the native grid and time step is largely independent of the grid-box size and time step length over which it operates. There is also little difference in the rainfall variability on larger/longer spatial/temporal scales. Tropical convection in the model on the native grid/time step is spatially and temporally intermittent, producing very large rainfall amounts interspersed with grid boxes/time steps of little or no rain. In contrast, switching off the deep convection parametrization, albeit at an unrealistic resolution for resolving tropical convection, results in very persistent (for limited periods), but very sporadic, rainfall. In both cases, spatial and temporal averaging smoothes out this intermittency. On the ˜ 100 km scale, for oceanic regions, the spectra of 3-hourly and daily mean rainfall in the configurations with parametrized convection agree fairly well with those from satellite-derived rainfall estimates, while at ˜ 10-day timescales the averages are overestimated, indicating a lack of intra-seasonal variability. Over tropical land the results are more varied, but the model often underestimates the daily mean rainfall (partly as a result of a poor diurnal cycle) but still lacks variability on intra-seasonal timescales. Ultimately, such work will shed light on how uncertainties in modelling small-/short-scale processes relate to uncertainty in climate change projections of rainfall distribution and variability, with a view to reducing such uncertainty through improved modelling of small-/short-scale processes.

On the biomechanical analysis of the calories expended in a straight boxing jab

PubMed Central

2017-01-01

Boxing and related sports activities have become a standard workout regime at many fitness studios worldwide. Oftentimes, people are interested in the calories expended during these workouts. This note focuses on determining the calories in a boxer's jab, using kinematic vector-loop relations and basic work–energy principles. Numerical simulations are undertaken to illustrate the basic model. Multi-limb extensions of the model are also discussed. PMID:28404871

Application of Interface Technology in Nonlinear Analysis of a Stitched/RFI Composite Wing Stub Box

NASA Technical Reports Server (NTRS)

Wang, John T.; Ransom, Jonathan B.

1997-01-01

A recently developed interface technology was successfully employed in the geometrically nonlinear analysis of a full-scale stitched/RFI composite wing box loaded in bending. The technology allows mismatched finite element models to be joined in a variationally consistent manner and reduces the modeling complexity by eliminating transition meshing. In the analysis, local finite element models of nonlinearly deformed wide bays of the wing box are refined without the need for transition meshing to the surrounding coarse mesh. The COMET-AR finite element code, which has the interface technology capability, was used to perform the analyses. The COMET-AR analysis is compared to both a NASTRAN analysis and to experimental data. The interface technology solution is shown to be in good agreement with both. The viability of interface technology for coupled global/local analysis of large scale aircraft structures is demonstrated.

Ozone nighttime recovery in the marine boundary layer: Measurement and simulation of the ozone diurnal cycle at Reunion Island

NASA Astrophysics Data System (ADS)

Bremaud, P. J.; Taupin, F.; Thompson, A. M.; Chaumerliac, N.

1998-02-01

We describe the diurnal cycle of ozone in the marine boundary layer measured at Reunion Island (21°S, 55°E) in the western part of the Indian Ocean in August-September 1995. Results from a box chemistry model are compared with ozone measurements at Reunion Island. We focus on the peak-to-peak amplitude of ozone concentration, since our measurements show a variation of about 4 parts per billion by volume, which is close to the value obtained by Johnson et al. [1990] during the Soviet-American Gases and Aerosols (SAGA) 1987 Indian Ocean cruise. Different dynamical mechanisms are examined in order to reproduce such a variation. We conclude that the most important one is the exchange between the ozone-rich free troposphere and the ozone-poor boundary layer. This exchange is supposed to be more important during the night than during the day, allowing ozone nighttime recovery. This is the key point of the observed diurnal cycle, since daytime ozone photochemistry is well described by the model. Then we assume an entrainment velocity equal to 1 mm s-1 during the day and 14 mm s-1 during the night to closely match our measurements. Topography influences, together with clouds, are presumed to be responsible for this difference between nighttime and daytime entrainment velocities of free tropospheric air into the boundary layer at Reunion Island. Over the open ocean the difference of the turbulent flux of sensible heat between the day and the night explains the strong ozone nighttime recovery observed by us and by Johnson et al. [1990].

Box Tomography: An efficient tomographic method for imaging localized structures in the deep Earth

NASA Astrophysics Data System (ADS)

Masson, Yder; Romanowicz, Barbara

2017-04-01

The accurate imaging of localized geological structures inside the deep Earth is key to understand our planet and its history. Since the introduction of the Preliminary Reference Earth Model, many generations of global tomographic models have been developed and give us access to the 3D structure of the Earth's interior. The latest generation of global tomographic models has emerged with the development of accurate numerical wavefield computations in a 3D earth combined with access to enhanced HPC capabilities. These models have sharpened up mantle images and unveiled relatively small scale structures that were blurred out in previous generation models. Fingerlike structures have been found at the base of the oceanic asthenosphere, and vertically oriented broad low velocity plume conduits [1] extend throughout the lower mantle beneath those major hotspots that are located within the perimeter of the deep mantle large low shear velocity provinces (LLSVPs). While providing new insights into our understanding of mantle dynamics, the detailed morphology of these features requires further efforts to obtain higher resolution images. In recent years, we developed a theoretical framework [2][3] for the tomographic imaging of localised geological structures buried inside the Earth, where no seismic sources nor receivers are necessarily present. We call this "box tomography" [4]. The essential difference between box-tomography and standard tomographic methods is that the numerical modeling (i.e. the raytracing in travel time tomography and the wave propagation in waveform tomography or full waveform inversion) is completely confined within the small box-region imaged. Thus, box tomography is a lot more efficient than global tomography (i.e. where we invert for the velocity in the larger volume that encompasses all the sources and receivers), for imaging localised objects. We present 2D and 3D examples showing that box tomography can be employed for imaging structures present within the D'' region at the base of the mantle. Further, we show that box-tomography performs well even in the difficult situation where the velocity distribution in the mantle above the target structure is not known a-priori. REFERENCES [1] French, S. W. and B. Romanowicz (2015) Broad Plumes at the base of the mantle beneath major hotspots, Nature, 525, 95-99 [2] Masson, Y., Cupillard, P., Capdeville, Y., & Romanowicz, B. (2013). On the numerical implementation of time-reversal mirrors for tomographic imaging. Geophysical Journal International, ggt459. [3] Masson, Y., & Romanowicz, B. (2017). Fast computation of synthetic seismograms within a medium containing remote localized perturbations: a numerical solution to the scattering problem. Geophysical Journal International, 208(2), 674-692. [4] Masson, Y., & Romanowicz, B. (2017). Box Tomography: Localised imaging of remote targets buried in an unknown medium, a step forward for understanding key structures in the deep Earth. Geophysical Journal International, (under review).

Application of a Three-Layer Photochemical Box Model in an Athens Street Canyon.

PubMed

Proyou, Athena G; Ziomas, Loannis C; Stathopoulos, Antony

1998-05-01

The aim of this paper is to show that a photochemical box model could describe the air pollution diurnal profiles within a typical street canyon in the city of Athens. As sophisticated three-dimensional dispersion models are computationally expensive and they cannot serve to simulate pollution levels in the scale of an urban street canyon, a suitably modified three-layer photochemical box model was applied. A street canyon of Athens with heavy traffic was chosen to apply the aforementioned model. The model was used to calculate pollutant concentrations during two days with meteorological conditions favoring pollutant accumulation. Road traffic emissions were calculated based on existing traffic load measurements. Meteorological data, as well as various pollutant concentrations, in order to compare with the model results, were provided by available measurements. The calculated concentrations were found to be in good agreement with measured concentration levels and show that, when traffic load and traffic composition data are available, this model can be used to predict pollution episodes. It is noteworthy that high concentrations persisted, even after additional traffic restriction measures were taken on the second day because of the high pollution levels.

Experiences in Automated Calibration of a Nickel Equation of State

NASA Astrophysics Data System (ADS)

Carpenter, John H.

2017-06-01

Wide availability of large computers has led to increasing incorporation of computational data, such as from density functional theory molecular dynamics, in the development of equation of state (EOS) models. Once a grid of computational data is available, it is usually left to an expert modeler to model the EOS using traditional techniques. One can envision the possibility of using the increasing computing resources to perform black-box calibration of EOS models, with the goal of reducing the workload on the modeler or enabling non-experts to generate good EOSs with such a tool. Progress towards building such a black-box calibration tool will be explored in the context of developing a new, wide-range EOS for nickel. While some details of the model and data will be shared, the focus will be on what was learned by automatically calibrating the model in a black-box method. Model choices and ensuring physicality will also be discussed. Sandia National Laboratories is a multi-mission laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Explaining electric conductivity using the particle-in-a-box model: quantum superposition is the key

NASA Astrophysics Data System (ADS)

Sivanesan, Umaseh; Tsang, Kin; Izmaylov, Artur F.

2017-12-01

Most of the textbooks explaining electric conductivity in the context of quantum mechanics provide either incomplete or semi-classical explanations that are not connected with the elementary concepts of quantum mechanics. We illustrate the conduction phenomena using the simplest model system in quantum dynamics, a particle in a box (PIB). To induce the particle dynamics, a linear potential tilting the bottom of the box is introduced, which is equivalent to imposing a constant electric field for a charged particle. Although the PIB model represents a closed system that cannot have a flow of electrons through the system, we consider the oscillatory dynamics of the particle probability density as the analogue of the electric current. Relating the amplitude and other parameters of the particle oscillatory dynamics with the gap between the ground and excited states of the PIB model allows us to demonstrate one of the most basic dependencies of electric conductivity on the valence-conduction band gap of the material.

Steam-load-forecasting technique for central-heating plants. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, M.C.; Carnahan, J.V.

Because boilers generally are most efficient at full loads, the Army could achieve significant savings by running fewer boilers at high loads rather than more boilers at low loads. A reliable load prediction technique could help ensure that only those boilers required to meet demand are on line. This report presents the results of an investigation into the feasibility of forecasting heat plant steam loads from historical patterns and weather information. Using steam flow data collected at Fort Benjamin Harrison, IN, a Box-Jenkins transfer function model with an acceptably small prediction error was initially identified. Initial investigation of forecast modelmore » development appeared successful. Dynamic regression methods using actual ambient temperatures yielded the best results. Box-Jenkins univariate models' results appeared slightly less accurate. Since temperature information was not needed for model building and forecasting, however, it is recommended that Box-Jenkins models be considered prime candidates for load forecasting due to their simpler mathematics.« less

Mathematical modeling of a Fermilab helium liquefier coldbox

DOE Office of Scientific and Technical Information (OSTI.GOV)

Geynisman, M.G.; Walker, R.J.

1995-12-01

Fermilab Central Helium Liquefier (CHL) facility is operated 24 hours-a-day to supply 4.6{degrees}K for the Fermilab Tevatron superconducting proton-antiproton collider Ring and to recover warm return gases. The centerpieces of the CHL are two independent cold boxes rated at 4000 and 5400 liters/hour with LN{sub 2} precool. These coldboxes are Claude cycle and have identical heat exchangers trains, but different turbo-expanders. The Tevatron cryogenics demand for higher helium supply from CHL was the driving force to investigate an installation of an expansion engine in place of the Joule-Thompson valve. A mathematical model was developed to describe the thermo- and gas-dynamicmore » processes for the equipment included in the helium coldbox. The model is based on a finite element approach, opposite to a global variables approach, thus providing for higher accuracy and conversion stability. Though the coefficients used in thermo- and gas-dynamic equations are unique for a given coldbox, the general approach, the equations, the methods of computations, and most of the subroutines written in FORTRAN can be readily applied to different coldboxes. The simulation results are compared against actual operating data to demonstrate applicability of the model.« less

RNA helicase proteins as chaperones and remodelers

PubMed Central

Jarmoskaite, Inga; Russell, Rick

2014-01-01

Superfamily 2 helicase proteins are ubiquitous in RNA biology and have an extraordinarily broad set of functional roles. Central among these roles are to promote rearrangements of structured RNAs and to remodel RNA-protein complexes (RNPs), allowing formation of native RNA structure or progression through a functional cycle of structures. While all superfamily 2 helicases share a conserved helicase core, they are divided evolutionarily into several families, and it is principally proteins from three families, the DEAD-box, DEAH/RHA and Ski2-like families, that function to manipulate structured RNAs and RNPs. Strikingly, there are emerging differences in the mechanisms of these proteins, both between families and within the largest family (DEAD-box), and these differences appear to be tuned to their RNA or RNP substrates and their specific roles. This review outlines basic mechanistic features of the three families and surveys individual proteins and the current understanding of their biological substrates and mechanisms. PMID:24635478

Optimization of Pressurized Liquid Extraction of Three Major Acetophenones from Cynanchum bungei Using a Box-Behnken Design

PubMed Central

Li, Wei; Zhao, Li-Chun; Sun, Yin-Shi; Lei, Feng-Jie; Wang, Zi; Gui, Xiong-Bin; Wang, Hui

2012-01-01

In this work, pressurized liquid extraction (PLE) of three acetophenones (4-hydroxyacetophenone, baishouwubenzophenone, and 2,4-dihydroxyacetophenone) from Cynanchum bungei (ACB) were investigated. The optimal conditions for extraction of ACB were obtained using a Box-Behnken design, consisting of 17 experimental points, as follows: Ethanol (100%) as the extraction solvent at a temperature of 120 °C and an extraction pressure of 1500 psi, using one extraction cycle with a static extraction time of 17 min. The extracted samples were analyzed by high-performance liquid chromatography using an UV detector. Under this optimal condition, the experimental values agreed with the predicted values by analysis of variance. The ACB extraction yield with optimal PLE was higher than that obtained by soxhlet extraction and heat-reflux extraction methods. The results suggest that the PLE method provides a good alternative for acetophenone extraction. PMID:23203079

Design and Test of Wendelstein 7-X Water-Cooled Divertor Scraper

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boscary, J.; Greuner, Henri; Ehrke, Gunnar

Heat load calculations have indicated the possible overloading of the ends of the water-cooled divertor facing the pumping gap beyond their technological limit. The intention of the scraper is the interception of some of the plasma fluxes both upstream and downstream before they reach the divertor surface. The scraper is divided into six modules of four plasma facing components (PFCs); each module has four PFCs hydraulically connected in series by two water boxes (inlet and outlet). A full-scale prototype of one module has been manufactured. Development activities have been carried out to connect the water boxes to the cooling pipesmore » of the PFCs by tungsten inert gas internal orbital welding. This prototype was successfully tested in the GLADIS facility with 17 MW/m2 for 500 cycles. The results of these activities have confirmed the possible technological basis for a fabrication of the water-cooled scraper.« less

Box-Cox transformation of left-censored data with application to the analysis of coronary artery calcification and pharmacokinetic data.

PubMed

Han, Cong; Kronmal, Richard

2004-12-15

Box-Cox transformation is investigated for regression models for left-censored data. Examples are provided using coronary calcification data from the Multi-Ethnic Study of Atherosclerosis and pharmacokinetic data of a nicotine nasal spray. Copyright 2004 John Wiley & Sons, Ltd.

MADS-box out of the black box

USDA-ARS?s Scientific Manuscript database

The compelling elegance of using genome-wide scans to detect the signature of selection is difficult to resist, but is countered by the low demonstrated efficacy of pinpointing the actual genes and traits that are the targets of selection in non-model species. While the difficulty of going from a s...

A Short-Term Forecasting Procedure for Institution Enrollments.

ERIC Educational Resources Information Center

Pfitzner, Charles Barry

1987-01-01

Applies the Box-Jenkins time series methodology to enrollment data for the Virginia community college system. Describes the enrollment data set, the Box-Jenkins approach, and the forecasting results. Discusses the value of one-quarter ahead enrollment forecasts and implications for practice. Provides a technical discussion of the model. (DMM)

76 FR 444 - Airworthiness Directives; Empresa Brasileira de Aeronautica S.A. (EMBRAER) Model EMB-500 Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-05

.... Farina Lima, 2170, Sao Jose dos Campos--SP, CEP: 12227-901--PO Box: 38/2, BRASIL, telephone: ++55 12 3927... Campos--SP, CEP: 12227-901--PO Box: 38/2, BRASIL, telephone: ++55 12 3927-5383; fax: ++55 12 3927-2610; E...

76 FR 40286 - Airworthiness Directives; Empresa Brasileira de Aeronáutica S.A. (EMBRAER) Model EMB-505 Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-08

..., Sao Jose dos Campos--SP, CEP: 12227-901--PO Box: 36/2, BRASIL; telephone: ++55 12 3927-5383; fax: ++55... Campos--SP, CEP: 12227-901--PO Box: 36/2, BRASIL; telephone: ++55 12 3927-5383; fax: ++55 12 3927-2619; E...

75 FR 68684 - Airworthiness Directives; Empresa Brasileira de Aeronautica S.A. (EMBRAER) Model EMB-500 Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-09

..., Sao Jose dos Campos--SP, CEP: 12227-901--P.O. Box: 38/2, BRASIL, telephone: ++55 12 3927-5383; fax... Support, Av. Brig. Farina Lima, 2170, Sao Jose dos Campos--SP, CEP: 12227-901--P.O. Box: 38/2, BRASIL...

Combat Identification Modeling Using Neural Networks Techniques

DTIC Science & Technology

2009-03-01

Ybarvector SSpe ANOVA Xhatp; clear Yhatp U Z xi xerror yerror Tcrit BoxCoxusedlamda BoxCoxusedlog; clear leveragepoints Cooks DFFITS Cooksinfluence...counter lofFo e; clear lofFpvalue SSlof SSpe StdErr To Tstat Tpvalue Bhat Rstud I VIF; clear invR Tcrit X LofFit ALLREG BOXCOX GRAPHS globalp Warnng

Combat Identification Modeling Using Robust Optimization Techniques

DTIC Science & Technology

2008-03-01

ePRESS Si2 Rstud t nvector groupnum Ybarvector SSpe ANOVA Xhatp; clear Yhatp U Z xi xerror yerror Tcrit BoxCoxusedlamda BoxCoxusedlog; clear...dfsslof; clear nvector ttlvector Ybarvector m j N groupnum counter lofFo e; clear lofFpvalue SSlof SSpe StdErr To Tstat Tpvalue Bhat Rstud I VIF

Long Cycle Life Secondary Lithium Cells Utilizing Tetrahydrofuran.

DTIC Science & Technology

1984-04-01

Rosenwasser) Code RD-I Washington, D.C. 20360 Washington, D.C. 20380 Naval Civil Engineering Laboratory 1 Dean William Tolles Attn: Dr. R. W. Drisko...Ocean Systems Center 11 apel Street San Diego, California 92152 wton, Massachusetts 02158 Dr. J. J. Auborn Dr. Adam Heller Bell Laboratories Bell...University Research Triangle Park, NC 27709 Evanston, Illinois 60201 Dr. William Ayers Dr. Aaron Fletcher ECD Inc. Naval Weapons Center P.O. Box 5357 Code

The ubiquitin conjugating enzyme UbcH10 competes with UbcH3 for binding to the SCF complex, a ubiquitin ligase involved in cell cycle progression

USDA-ARS?s Scientific Manuscript database

Ubiquitylation, which regulates most biological pathways, occurs through an enzymatic cascade involving a ubiquitin (ub) activating enzyme (E1), a ub conjugating enzyme (E2) and a ub ligase (E3). UbcH3 is the E2 that interacts with SCF (Skp1/Cul1/F-box protein) complex and ubiquitylates many protein...

[Changes of telemetry electrical activity in the infralimbic cortex of morphine-dependent rats with extinguished drug-seeking behavior].

PubMed

Li, Jing; Pan, Qunwan; Zhu, Zaiman; Li, Min; Bai, Yu; Yu, Ran

2015-05-01

To investigate the changes of telemetry electrical activity in the infralimbic cortex (IL) of morphine-dependent rats with extinguished drug-seeking behavior. SD rats were randomly divided into model group and control group and received operations of brain stereotaxic electrode embedding in the IL. The rats in the model group were induced to acquire morphine dependence and then received subsequent extinction training, and the changes of electrical activity in the IL were recorded with a physical wireless telemetry system. In rats with morphine dependence, the time staying in the white box was significantly longer on days 1 and 2 after withdrawal than that before morphine injection and that of the control rats, but was obviously reduced on days 1 and 2 after extinction training to the control level. Compared with the control group, the morphine-dependent rats on day 2 following withdrawal showed significantly increased β wave and decreased δ wave when they stayed in the white box but significantly increased δ wave and decreased α wave and β wave when they shuttled from the black to the white box. On day 2 of extinction, the model rats, when staying in the white box, showed significantly decreased θ wave compared with that of the control rats group but decreased β wave and θ wave and increased δ wave compared with those in the withdrawal period. When they shuttled from black to white box, the model rats showed decreased δ wave and increased α wave and β wave compared with those in the withdrawal period. Morphine-dependent rats have abnormal changes of electrical activity in the IL in drug-seeking extinction to affect their drug-seeking motive and inhibit the expression and maintenance of drug-seeking behaviors.

Assessing household health expenditure with Box-Cox censoring models.

PubMed

Chaze, Jean-Paul

2005-09-01

In order to assess the combined presence of zero expenditures and a heavily skewed distribution of positive expenditures, the Box-Cox transformation with location parameter is used to define a set of models generalising the standard Tobit, Heckman selection and double-hurdle models. Extended flexibility with respect to previous specifications is introduced, notably regarding negative transformation parameters, which may prove necessary for medical expenditures, and corner-solution outcomes. An illustration is provided by the analysis of household health expenditure in Switzerland. Copyright (c) 2005 John Wiley & Sons, Ltd.

Mercury Conditions for the MESSENGER Mission Simulated in High- Solar-Radiation Vacuum Tests

NASA Technical Reports Server (NTRS)

Wong, Wayne A.

2003-01-01

The MESSENGER (Mercury Surface, Space Environment, Geochemistry, and Ranging) spacecraft, planned for launch in March 2004, will perform two flybys of Mercury before entering a year-long orbit of the planet in September 2009. The mission will provide opportunities for detailed characterization of the surface, interior, atmosphere, and magnetosphere of the closest planet to the Sun. The NASA Glenn Research Center and the MESSENGER spacecraft integrator, the Johns Hopkins University Applied Physics Laboratory, have partnered under a Space Act Agreement to characterize a variety of critical components and materials under simulated conditions expected near Mercury. Glenn's Vacuum Facility 6, which is equipped with a solar simulator, can simulate the vacuum and high solar radiation anticipated in Mercury orbit. The MESSENGER test hardware includes a variety of materials and components that are being characterized during the Tank 6 vacuum tests, where the hardware will be exposed to up to 11 suns insolation, simulating conditions expected in Mercury orbit. In 2002, ten solar vacuum tests were conducted, including beginning of life, end of life, backside exposure, and solar panel thermal shock cycling tests. Components tested include candidate solar array panels, sensors, thermal shielding materials, and communication devices. As an example, for the solar panel thermal shock cycling test, two candidate solar array panels were suspended on a lift mechanism that lowered the panels into a liquid-nitrogen-cooled box. After reaching -140 C, the panels were then lifted out of the box and exposed to the equivalent of 6 suns (8.1 kilowatts per square meters). After five cold soak/heating cycles were completed successfully, there was no apparent degradation in panel performance. An anticipated 100-hr thermal shield life test is planned for autumn, followed by solar panel flight qualification tests in winter. Glenn's ongoing support to the MESSENGER program has been instrumental in identifying design solutions and validating thermal performance models under a very aggressive development schedule. The test data have assisted Johns Hopkins engineers in selecting a flight solar array vendor and a thermal shield design. MESSENGER is one in a series of missions in NASA's Discovery Program. Infrared thermography provides data on the thermal gradients in the MESSENGER components during high solar insolation vacuum testing.

Y-box-binding protein YB-1 identifies high-risk patients with primary breast cancer benefiting from rapidly cycled tandem high-dose adjuvant chemotherapy.

PubMed

Gluz, Oleg; Mengele, Karin; Schmitt, Manfred; Kates, Ronald; Diallo-Danebrock, Raihana; Neff, Frauke; Royer, Hans-Dieter; Eckstein, Niels; Mohrmann, Svjetlana; Ting, Evelyn; Kiechle, Marion; Poremba, Christopher; Nitz, Ulrike; Harbeck, Nadia

2009-12-20

To investigate the potential of Y-box-binding protein YB-1, a multifunctional protein linked to tumor aggressiveness and multidrug resistance, to identify patients with breast cancer likely to benefit from dose-intensified chemotherapy regimens. YB-1 was immunohistochemically determined in 211 primary tumors from the prospective, randomized West German Study Group WSG-AM-01 trial in high-risk (> or = 10 involved lymph-nodes) breast cancer (HRBC). Predictive impact of YB-1 was assessed by multivariate survival analysis, including time-varying factor-therapy interactions. At median follow-up of 61.7 months, patients receiving rapidly cycled tandem high-dose therapy (HD; two cycles [2x] epirubicin 90 mg/m(2) and cyclophosphamide 600 mg/m(2) every 14 days, followed by 2x epirubicin 90 mg/m(2), cyclophosphamide 3,000 mg/m(2), and thiotepa 400 mg/m(2) every 21 days) had better disease-free survival (DFS; hazard ratio [HR] = 0.62; 95% CI, 0.44 to 0.89) and overall survival (OS; HR = 0.59; 95% CI, 0.4 to 0.89) than those receiving conventional dose-dense chemotherapy (DD; 4x epirubicin 90 mg/m(2) and cyclophosphamide 600 mg/m(2), followed by 3x cyclophosphamide 600 mg/m(2), methotrexate 40 mg/m(2), and fluorouracil 600 mg/m(2) every 14 days). High YB-1 was associated with aggressive tumor phenotype (negative steroid hormone receptor status, positive human epidermal growth factor receptor 2 and p53 status, high MIB-1, unfavorable tumor grade) and poor OS (median 78 v 97 months; P = .01). In patients with high YB-1, HD yielded a 63-month median DFS (P = .001) and a 46-month median OS advantage (P = .002) versus DD. In multivariate models, patients with high B-1 receiving HD (v DD) had one third the hazard rate after 20 months for DFS and one sixth after 40 months for OS. In a randomized prospective cancer therapy trial, for the first time, a strong predictive impact of YB-1 on survival has been demonstrated: enhanced benefit from HD (v DD) therapy occurs in HRBC with high YB-1. Future trials could therefore address optimal chemotherapeutic strategies,taking YB-1 into account.

Direct modulation of T-box riboswitch-controlled transcription by protein synthesis inhibitors

PubMed Central

Stamatopoulou, Vassiliki; Apostolidi, Maria; Li, Shuang; Lamprinou, Katerina; Papakyriakou, Athanasios

2017-01-01

Abstract Recently, it was discovered that exposure to mainstream antibiotics activate numerous bacterial riboregulators that control antibiotic resistance genes including metabolite-binding riboswitches and other transcription attenuators. However, the effects of commonly used antibiotics, many of which exhibit RNA-binding properties, on the widespread T-box riboswitches, remain unknown. In Staphylococcus aureus, a species-specific glyS T-box controls the supply of glycine for both ribosomal translation and cell wall synthesis, making it a promising target for next-generation antimicrobials. Here, we report that specific protein synthesis inhibitors could either significantly increase T-box-mediated transcription antitermination, while other compounds could suppress it, both in vitro and in vivo. In-line probing of the full-length T-box combined with molecular modelling and docking analyses suggest that the antibiotics that promote transcription antitermination stabilize the T-box:tRNA complex through binding specific positions on stem I and the Staphylococcal-specific stem Sa. By contrast, the antibiotics that attenuate T-box transcription bind to other positions on stem I and do not interact with stem Sa. Taken together, our results reveal that the transcription of essential genes controlled by T-box riboswitches can be directly modulated by commonly used protein synthesis inhibitors. These findings accentuate the regulatory complexities of bacterial response to antimicrobials that involve multiple riboregulators. PMID:28973457

Direct modulation of T-box riboswitch-controlled transcription by protein synthesis inhibitors.

PubMed

Stamatopoulou, Vassiliki; Apostolidi, Maria; Li, Shuang; Lamprinou, Katerina; Papakyriakou, Athanasios; Zhang, Jinwei; Stathopoulos, Constantinos

2017-09-29

Recently, it was discovered that exposure to mainstream antibiotics activate numerous bacterial riboregulators that control antibiotic resistance genes including metabolite-binding riboswitches and other transcription attenuators. However, the effects of commonly used antibiotics, many of which exhibit RNA-binding properties, on the widespread T-box riboswitches, remain unknown. In Staphylococcus aureus, a species-specific glyS T-box controls the supply of glycine for both ribosomal translation and cell wall synthesis, making it a promising target for next-generation antimicrobials. Here, we report that specific protein synthesis inhibitors could either significantly increase T-box-mediated transcription antitermination, while other compounds could suppress it, both in vitro and in vivo. In-line probing of the full-length T-box combined with molecular modelling and docking analyses suggest that the antibiotics that promote transcription antitermination stabilize the T-box:tRNA complex through binding specific positions on stem I and the Staphylococcal-specific stem Sa. By contrast, the antibiotics that attenuate T-box transcription bind to other positions on stem I and do not interact with stem Sa. Taken together, our results reveal that the transcription of essential genes controlled by T-box riboswitches can be directly modulated by commonly used protein synthesis inhibitors. These findings accentuate the regulatory complexities of bacterial response to antimicrobials that involve multiple riboregulators. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Box C/D sRNA stem ends act as stabilizing anchors for box C/D di-sRNPs

PubMed Central

Yip, W. S. Vincent; Shigematsu, Hideki; Taylor, David W.; Baserga, Susan J.

2016-01-01

Ribosomal RNA (rRNA) modifications are essential for ribosome function in all cellular organisms. Box C/D small (nucleolar) ribonucleoproteins [s(no)RNPs] catalyze 2′-O-methylation, one rRNA modification type in Eukarya and Archaea. Negatively stained electron microscopy (EM) models of archaeal box C/D sRNPs have demonstrated the dimeric sRNP (di-sRNP) architecture, which has been corroborated by nuclear magnetic resonance (NMR) studies. Due to limitations of the structural techniques, the orientation of the box C/D sRNAs has remained unclear. Here, we have used cryo-EM to elucidate the sRNA orientation in a M. jannaschii box C/D di-sRNP. The cryo-EM reconstruction suggests a parallel orientation of the two sRNAs. Biochemical and structural analyses of sRNPs assembled with mutant sRNAs indicate a potential interaction between the sRNA stem ends. Our results suggest that the parallel arrangement of the sRNAs juxtaposes their stem ends into close proximity to allow for a stabilizing interaction that helps maintain the di-sRNP architecture. PMID:27342279

A fast ellipse extended target PHD filter using box-particle implementation

NASA Astrophysics Data System (ADS)

Zhang, Yongquan; Ji, Hongbing; Hu, Qi

2018-01-01

This paper presents a box-particle implementation of the ellipse extended target probability hypothesis density (ET-PHD) filter, called the ellipse extended target box particle PHD (EET-BP-PHD) filter, where the extended targets are described as a Poisson model developed by Gilholm et al. and the term "box" is here equivalent to the term "interval" used in interval analysis. The proposed EET-BP-PHD filter is capable of dynamically tracking multiple ellipse extended targets and estimating the target states and the number of targets, in the presence of clutter measurements, false alarms and missed detections. To derive the PHD recursion of the EET-BP-PHD filter, a suitable measurement likelihood is defined for a given partitioning cell, and the main implementation steps are presented along with the necessary box approximations and manipulations. The limitations and capabilities of the proposed EET-BP-PHD filter are illustrated by simulation examples. The simulation results show that a box-particle implementation of the ET-PHD filter can avoid the high number of particles and reduce computational burden, compared to a particle implementation of that for extended target tracking.

Predicting a future lifetime through Box-Cox transformation.

PubMed

Yang, Z

1999-09-01

In predicting a future lifetime based on a sample of past lifetimes, the Box-Cox transformation method provides a simple and unified procedure that is shown in this article to meet or often outperform the corresponding frequentist solution in terms of coverage probability and average length of prediction intervals. Kullback-Leibler information and second-order asymptotic expansion are used to justify the Box-Cox procedure. Extensive Monte Carlo simulations are also performed to evaluate the small sample behavior of the procedure. Certain popular lifetime distributions, such as Weibull, inverse Gaussian and Birnbaum-Saunders are served as illustrative examples. One important advantage of the Box-Cox procedure lies in its easy extension to linear model predictions where the exact frequentist solutions are often not available.

Aircraft wing weight build-up methodology with modification for materials and construction techniques

NASA Technical Reports Server (NTRS)

York, P.; Labell, R. W.

1980-01-01

An aircraft wing weight estimating method based on a component buildup technique is described. A simplified analytically derived beam model, modified by a regression analysis, is used to estimate the wing box weight, utilizing a data base of 50 actual airplane wing weights. Factors representing materials and methods of construction were derived and incorporated into the basic wing box equations. Weight penalties to the wing box for fuel, engines, landing gear, stores and fold or pivot are also included. Methods for estimating the weight of additional items (secondary structure, control surfaces) have the option of using details available at the design stage (i.e., wing box area, flap area) or default values based on actual aircraft from the data base.

Geochemical cycles in sediments deposited on the slopes of the Guaymas and Carmen Basins of the Gulf of California over the last 180 years

USGS Publications Warehouse

Dean, W.; Pride, C.; Thunell, R.

2004-01-01

Sediments deposited on the slopes of the Guaymas and Carmen Basins in the central Gulf of California were recovered in two box cores. Q-mode factor analyses identified detrital-clastic, carbonate, and redox associations in the elemental composition of these sediments. The detrital-clastic fraction appears to contain two source components, a more mafic component presumably derived from the Sierra Madre Occidental along the west coast of Mexico, and a more felsic component most likely derived from sedimentary rocks (mostly sandstones) of the Colorado Plateau and delivered by the Colorado River. The sediments also contain significant siliceous biogenic components and minor calcareous biogenic components, but those components were not quantified in this study. Redox associations were identified in both cores based on relatively high concentrations of molybdenum, which is indicative of deposition under conditions of sulfate reduction. Decreases in concentrations of molybdenum in younger sediments suggest that the bottom waters of the Gulf have became more oxygenated over the last 100 years. Many geochemical components in both box cores exhibit distinct cyclicity with periodicities of 10-20 years. The most striking are 20-year cycles in the more mafic components (e.g., titanium), particularly in sediments deposited during the 19th century. In that century, the titanium cycles are in very good agreement with warm phases of the Pacific Decadal Oscillation, implying that at times of greater influx of titanium-rich volcanic debris, there were more El Nin??os and higher winter precipitation. The cycles are interpreted as due to greater and lesser riverine influx of volcanic rock debris from the Sierra Madre. There is also spectral evidence for periodicities of 4-8 and 8-16 years, suggesting that the delivery of detrital-clastic material is responding to some multiannual (ENSO?) forcing.

The Heliotail: Theory and Modeling

DOE PAGES

Pogorelov, N. V.

2016-05-31

Physical processes are discussed related to the heliotail which is formed when the solar wind interacts with the local interstellar medium. Although astrotails are commonly observed, the heliotail observations are only indirect. As a consequence, the direct comparison of the observed astrophysical objects and the Sun is impossible. This requires proper theoretical understanding of the heliotail formation and evolution, and numerical simulations in sufficiently large computational boxes. In this paper, we review some previous results related to the heliotail flow and show new simulations which demonstrate that the solar wind collimation inside the Parker spiral field lines diverted by themore » heliopause toward the heliotail is unrealistic. On the contrary, solar cycle effects ensure that the solar wind density reaches its largest values near the solar equatorial plane. We also argue that a realistic heliotail should be very long to account for the observed anisotropy of 1-10 TeV cosmic rays.« less

BEATBOX v1.0: Background Error Analysis Testbed with Box Models

NASA Astrophysics Data System (ADS)

Knote, Christoph; Barré, Jérôme; Eckl, Max

2018-02-01

The Background Error Analysis Testbed (BEATBOX) is a new data assimilation framework for box models. Based on the BOX Model eXtension (BOXMOX) to the Kinetic Pre-Processor (KPP), this framework allows users to conduct performance evaluations of data assimilation experiments, sensitivity analyses, and detailed chemical scheme diagnostics from an observation simulation system experiment (OSSE) point of view. The BEATBOX framework incorporates an observation simulator and a data assimilation system with the possibility of choosing ensemble, adjoint, or combined sensitivities. A user-friendly, Python-based interface allows for the tuning of many parameters for atmospheric chemistry and data assimilation research as well as for educational purposes, for example observation error, model covariances, ensemble size, perturbation distribution in the initial conditions, and so on. In this work, the testbed is described and two case studies are presented to illustrate the design of a typical OSSE experiment, data assimilation experiments, a sensitivity analysis, and a method for diagnosing model errors. BEATBOX is released as an open source tool for the atmospheric chemistry and data assimilation communities.

Finite element cochlea box model - Mechanical and electrical analysis of the cochlea

NASA Astrophysics Data System (ADS)

Nikolic, Milica; Teal, Paul D.; Isailovic, Velibor; Filipović, Nenad

2015-12-01

The primary role of the cochlea is to transform external sound stimuli into mechanical vibrations and then to neural impulses which are sent to the brain. A simplified cochlea box model was developed using the finite element method. Firstly, a mechanical model of the cochlea was analyzed. The box model consists of the basilar membrane and two fluid chambers - the scala vestibuli and scala tympani. The third chamber, the scala media, was neglected in the mechanical analysis. The best agreement with currently available analytical and experimental results was obtained when behavior of the fluid in the chambers was described using the wave acoustic equation and behavior of the basilar membrane was modeled with Newtonian dynamics. The obtained results show good frequency mapping. The second approach was to use an active model of the cochlea in which the Organ of Corti was included. The operation of the Organ of Corti involves the generation of current, caused by mechanical vibration. This current in turn causes a force applied to the basilar membrane, creating in this way an active feedback mechanism. A state space representation of the electro-mechanical model from existing literature was implemented and a first comparison with the finite element method is presented.

Stochastic modelling of temperatures affecting the in situ performance of a solar-assisted heat pump: The multivariate approach and physical interpretation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loveday, D.L.; Craggs, C.

Box-Jenkins-based multivariate stochastic modeling is carried out using data recorded from a domestic heating system. The system comprises an air-source heat pump sited in the roof space of a house, solar assistance being provided by the conventional tile roof acting as a radiation absorber. Multivariate models are presented which illustrate the time-dependent relationships between three air temperatures - at external ambient, at entry to, and at exit from, the heat pump evaporator. Using a deterministic modeling approach, physical interpretations are placed on the results of the multivariate technique. It is concluded that the multivariate Box-Jenkins approach is a suitable techniquemore » for building thermal analysis. Application to multivariate Box-Jenkins approach is a suitable technique for building thermal analysis. Application to multivariate model-based control is discussed, with particular reference to building energy management systems. It is further concluded that stochastic modeling of data drawn from a short monitoring period offers a means of retrofitting an advanced model-based control system in existing buildings, which could be used to optimize energy savings. An approach to system simulation is suggested.« less

Visualizing landscape hydrology as a means of education - The water cycle in a box

NASA Astrophysics Data System (ADS)

Lehr, Christian; Rauneker, Philipp; Fahle, Marcus; Hohenbrink, Tobias; Böttcher, Steven; Natkhin, Marco; Thomas, Björn; Dannowski, Ralf; Schwien, Bernd; Lischeid, Gunnar

2016-04-01

We used an aquarium to construct a physical model of the water cycle. The model can be used to visualize the movement of the water through the landscape from precipitation and infiltration via surface and subsurface flow to discharge into the sea. The model consists of two aquifers that are divided by a loamy aquitard. The 'geological' setting enables us to establish confining groundwater conditions and to demonstrate the functioning of artesian wells. Furthermore, small experiments with colored water as tracer can be performed to identify flow paths below the ground, simulate water supply problems like pollution of drinking water wells from inflowing contaminated groundwater or changes in subsurface flow direction due to changes in the predominant pressure gradients. Hydrological basics such as the connectivity of streams, lakes and the surrounding groundwater or the dependency of groundwater flow velocity from different substrates can directly be visualized. We used the model as an instructive tool in education and for public relations. We presented the model to different audiences from primary school pupils to laymen, students of hydrology up to university professors. The model was presented to the scientific community as part of the "Face of the Earth" exhibition at the EGU general assembly 2014. Independent of the antecedent knowledge of the audience, the predominant reactions were very positive. The model often acted as icebreaker to get a conversation on hydrological topics started. Because of the great interest, we prepared video material and a photo documentation on 1) the construction of the model and 2) the visualization of steady and dynamic hydrological situations. The videos will be published soon under creative common license and the collected material will be made accessible online. Accompanying documents will address professionals in hydrology as well as non-experts. In the PICO session, we will present details about the construction of the model and its main features. Further, short videos of specific processes and experiments will be shown.

Reversal of Increasing Tropical Ocean Hypoxia Trends With Sustained Climate Warming

NASA Astrophysics Data System (ADS)

Fu, Weiwei; Primeau, Francois; Keith Moore, J.; Lindsay, Keith; Randerson, James T.

2018-04-01

Dissolved oxygen (O2) is essential for the survival of marine animals. Climate change impacts on future oxygen distributions could modify species biogeography, trophic interactions, biodiversity, and biogeochemistry. The Coupled Model Intercomparison Project Phase 5 models predict a decreasing trend in marine O2 over the 21st century. Here we show that this increasing hypoxia trend reverses in the tropics after 2100 in the Community Earth System Model forced by atmospheric CO2 from the Representative Concentration Pathway 8.5 and Extended Concentration Pathway 8.5. In tropical intermediate waters between 200 and 1,000 m, the model predicts a steady decline of O2 and an expansion of oxygen minimum zones (OMZs) during the 21st century. By 2150, however, the trend reverses with oxygen concentration increasing and OMZ volume shrinking through 2300. A novel five-box model approach in conjunction with output from the full Earth system model is used to separate the contributions of biological and physical processes to the trends in tropical oxygen. The tropical O2 recovery is caused mainly by reductions in tropical biological export, coupled with a modest increase in ventilation after 2200. The time-evolving oxygen distribution impacts marine nitrogen cycling, with potentially important climate feedbacks.

Particle-in-a-box model of exciton absorption and electroabsorption in conjugated polymers

NASA Astrophysics Data System (ADS)

Pedersen, Thomas G.

2000-12-01

The recently proposed particle-in-a-box model of one-dimensional excitons in conjugated polymers is applied in calculations of optical absorption and electroabsorption spectra. It is demonstrated that for polymers of long conjugation length a superposition of single exciton resonances produces a line shape characterized by a square-root singularity in agreement with experimental spectra near the absorption edge. The effects of finite conjugation length on both absorption and electroabsorption spectra are analyzed.

On the biomechanical analysis of the calories expended in a straight boxing jab.

PubMed

Zohdi, T I

2017-04-01

Boxing and related sports activities have become a standard workout regime at many fitness studios worldwide. Oftentimes, people are interested in the calories expended during these workouts. This note focuses on determining the calories in a boxer's jab, using kinematic vector-loop relations and basic work-energy principles. Numerical simulations are undertaken to illustrate the basic model. Multi-limb extensions of the model are also discussed. © 2017 The Author(s).

Black-hole universe: time evolution.

PubMed

Yoo, Chul-Moon; Okawa, Hirotada; Nakao, Ken-ichi

2013-10-18

Time evolution of a black hole lattice toy model universe is simulated. The vacuum Einstein equations in a cubic box with a black hole at the origin are numerically solved with periodic boundary conditions on all pairs of faces opposite to each other. Defining effective scale factors by using the area of a surface and the length of an edge of the cubic box, we compare them with that in the Einstein-de Sitter universe. It is found that the behavior of the effective scale factors is well approximated by that in the Einstein-de Sitter universe. In our model, if the box size is sufficiently larger than the horizon radius, local inhomogeneities do not significantly affect the global expansion law of the Universe even though the inhomogeneity is extremely nonlinear.

Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species.

PubMed

Lui, Lauren M; Uzilov, Andrew V; Bernick, David L; Corredor, Andrea; Lowe, Todd M; Dennis, Patrick P

2018-05-16

Archaeal homologs of eukaryotic C/D box small nucleolar RNAs (C/D box sRNAs) guide precise 2'-O-methyl modification of ribosomal and transfer RNAs. Although C/D box sRNA genes constitute one of the largest RNA gene families in archaeal thermophiles, most genomes have incomplete sRNA gene annotation because reliable, fully automated detection methods are not available. We expanded and curated a comprehensive gene set across six species of the crenarchaeal genus Pyrobaculum, particularly rich in C/D box sRNA genes. Using high-throughput small RNA sequencing, specialized computational searches and comparative genomics, we analyzed 526 Pyrobaculum C/D box sRNAs, organizing them into 110 families based on synteny and conservation of guide sequences which determine methylation targets. We examined gene duplications and rearrangements, including one family that has expanded in a pattern similar to retrotransposed repetitive elements in eukaryotes. New training data and inclusion of kink-turn secondary structural features enabled creation of an improved search model. Our analyses provide the most comprehensive, dynamic view of C/D box sRNA evolutionary history within a genus, in terms of modification function, feature plasticity, and gene mobility.

Redox-controlled carbon and phosphorus burial: A mechanism for enhanced organic carbon sequestration during the PETM

NASA Astrophysics Data System (ADS)

Komar, Nemanja; Zeebe, Richard E.

2017-12-01

Geological records reveal a major perturbation in carbon cycling during the Paleocene-Eocene Thermal Maximum (PETM, ∼56 Ma), marked by global warming of more than 5 °C and a prominent negative carbon isotope excursion of at least 2.5‰ within the marine realm. The entire event lasted about 200,000 yr and was associated with a massive release of light carbon into the ocean-atmosphere system over several thousands of years. Here we focus on the terminal stage of the PETM, during which the ocean-atmosphere system rapidly recovered from the carbon cycle perturbation. We employ a carbon-cycle box model to examine the feedbacks between surface ocean biological production, carbon, oxygen, phosphorus, and carbonate chemistry during massive CO2 release events, such as the PETM. The model results indicate that the redox-controlled carbon-phosphorus feedback is capable of producing enhanced organic carbon sequestration during large carbon emission events. The locale of carbon oxidation (ocean vs. atmosphere) does not affect the amount of carbon sequestered. However, even though the model produces trends consistent with oxygen, excess accumulation rates of organic carbon (∼1700 Pg C during the recovery stage), export production and δ13 C data, it fails to reproduce the magnitude of change of sediment carbonate content and the CCD over-deepening during the recovery stage. The CCD and sediment carbonate content overshoot during the recovery stage is muted by a predicted increase in CaCO3 rain. Nonetheless, there are indications that the CaCO3 export remained relatively constant during the PETM. If this was indeed true, then an initial pulse of 3,000 Pg C followed by an additional, slow leak of 2,500 Pg C could have triggered an accelerated nutrient supply to the surface ocean instigating enhanced organic carbon export, consequently increasing organic carbon sequestration, resulting in an accelerated restoration of ocean-atmosphere biogeochemistry during the termination phase of the PETM.

Comparative Performance Evaluation of Rainfall-runoff Models, Six of Black-box Type and One of Conceptual Type, From The Galway Flow Forecasting System (gffs) Package, Applied On Two Irish Catchments

NASA Astrophysics Data System (ADS)

Goswami, M.; O'Connor, K. M.; Shamseldin, A. Y.

The "Galway Real-Time River Flow Forecasting System" (GFFS) is a software pack- age developed at the Department of Engineering Hydrology, of the National University of Ireland, Galway, Ireland. It is based on a selection of lumped black-box and con- ceptual rainfall-runoff models, all developed in Galway, consisting primarily of both the non-parametric (NP) and parametric (P) forms of two black-box-type rainfall- runoff models, namely, the Simple Linear Model (SLM-NP and SLM-P) and the seasonally-based Linear Perturbation Model (LPM-NP and LPM-P), together with the non-parametric wetness-index-based Linearly Varying Gain Factor Model (LVGFM), the black-box Artificial Neural Network (ANN) Model, and the conceptual Soil Mois- ture Accounting and Routing (SMAR) Model. Comprised of the above suite of mod- els, the system enables the user to calibrate each model individually, initially without updating, and it is capable also of producing combined (i.e. consensus) forecasts us- ing the Simple Average Method (SAM), the Weighted Average Method (WAM), or the Artificial Neural Network Method (NNM). The updating of each model output is achieved using one of four different techniques, namely, simple Auto-Regressive (AR) updating, Linear Transfer Function (LTF) updating, Artificial Neural Network updating (NNU), and updating by the Non-linear Auto-Regressive Exogenous-input method (NARXM). The models exhibit a considerable range of variation in degree of complexity of structure, with corresponding degrees of complication in objective func- tion evaluation. Operating in continuous river-flow simulation and updating modes, these models and techniques have been applied to two Irish catchments, namely, the Fergus and the Brosna. A number of performance evaluation criteria have been used to comparatively assess the model discharge forecast efficiency.

One-Dimensional Oscillator in a Box

ERIC Educational Resources Information Center

Amore, Paolo; Fernandez, Francisco M.

2010-01-01

We discuss a quantum-mechanical model of two particles that interact by means of a harmonic potential and are confined to a one-dimensional box with impenetrable walls. We apply perturbation theory to the cases of different and equal masses and analyse the symmetry of the states in the latter case. We compare the approximate perturbation results…

Modeling Wind Wave Evolution from Deep to Shallow Water

DTIC Science & Technology

2013-09-30

Janssen Theiss Research, PO Box 1533, El Granada , CA 94018 t: 415 609 5359 e: ttjanssen@gmail.com Thomas H. C. Herbers Department of Oceanography...NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) Theiss Research,PO Box 1533,El Granada ,CA,94018 8

The Use of Computer-Assisted Identification of ARIMA Time-Series.

ERIC Educational Resources Information Center

Brown, Roger L.

This study was conducted to determine the effects of using various levels of tutorial statistical software for the tentative identification of nonseasonal ARIMA models, a statistical technique proposed by Box and Jenkins for the interpretation of time-series data. The Box-Jenkins approach is an iterative process encompassing several stages of…

Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.

PubMed

Xue, Song; Wang, Ruiying; Yang, Fangping; Terns, Rebecca M; Terns, Michael P; Zhang, Xinxin; Maxwell, E Stuart; Li, Hong

2010-09-24

Box C/D small nucleolar and Cajal body ribonucleoprotein particles (sno/scaRNPs) direct site-specific 2'-O-methylation of ribosomal and spliceosomal RNAs and are critical for gene expression. Here we report crystal structures of an archaeal box C/D RNP containing three core proteins (fibrillarin, Nop56/58, and L7Ae) and a half-mer box C/D guide RNA paired with a substrate RNA. The structure reveals a guide-substrate RNA duplex orientation imposed by a composite protein surface and the conserved GAEK motif of Nop56/58. Molecular modeling supports a dual C/D RNP structure that closely mimics that recently visualized by electron microscopy. The substrate-bound dual RNP model predicts an asymmetric protein distribution between the RNP that binds and methylates the substrate RNA. The predicted asymmetric nature of the holoenzyme is consistent with previous biochemical data on RNP assembly and provides a simple solution for accommodating base-pairing between the C/D guide RNA and large ribosomal and spliceosomal substrate RNAs. Copyright © 2010 Elsevier Inc. All rights reserved.

Fault detection method for railway wheel flat using an adaptive multiscale morphological filter

NASA Astrophysics Data System (ADS)

Li, Yifan; Zuo, Ming J.; Lin, Jianhui; Liu, Jianxin

2017-02-01

This study explores the capacity of the morphology analysis for railway wheel flat fault detection. A dynamic model of vehicle systems with 56 degrees of freedom was set up along with a wheel flat model to calculate the dynamic responses of axle box. The vehicle axle box vibration signal is complicated because it not only contains the information of wheel defect, but also includes track condition information. Thus, how to extract the influential features of wheels from strong background noise effectively is a typical key issue for railway wheel fault detection. In this paper, an algorithm for adaptive multiscale morphological filtering (AMMF) was proposed, and its effect was evaluated by a simulated signal. And then this algorithm was employed to study the axle box vibration caused by wheel flats, as well as the influence of track irregularity and vehicle running speed on diagnosis results. Finally, the effectiveness of the proposed method was verified by bench testing. Research results demonstrate that the AMMF extracts the influential characteristic of axle box vibration signals effectively and can diagnose wheel flat faults in real time.

Evaluation of tracking accuracy of the CyberKnife system using a webcam and printed calibrated grid

PubMed Central

Shiomi, Hiroya; Higashinaka, Naokazu; Murashima, Yoshikazu; Miyamoto, Youichi; Yamazaki, Hideya; Mabuchi, Nobuhisa; Tsuda, Eimei; Ogawa, Kazuhiko

2016-01-01

Tracking accuracy for the CyberKnife's Synchrony system is commonly evaluated using a film‐based verification method. We have evaluated a verification system that uses a webcam and a printed calibrated grid to verify tracking accuracy over three different motion patterns. A box with an attached printed calibrated grid and four fiducial markers was attached to the motion phantom. A target marker was positioned at the grid's center. The box was set up using the other three markers. Target tracking accuracy was evaluated under three conditions: 1) stationary; 2) sinusoidal motion with different amplitudes of 5, 10, 15, and 20 mm for the same cycle of 4 s and different cycles of 2, 4, 6, and 8 s with the same amplitude of 15 mm; and 3) irregular breathing patterns in six human volunteers breathing normally. Infrared markers were placed on the volunteers’ abdomens, and their trajectories were used to simulate the target motion. All tests were performed with one‐dimensional motion in craniocaudal direction. The webcam captured the grid's motion and a laser beam was used to simulate the CyberKnife's beam. Tracking error was defined as the difference between the grid's center and the laser beam. With a stationary target, mean tracking error was measured at 0.4 mm. For sinusoidal motion, tracking error was less than 2 mm for any amplitude and breathing cycle. For the volunteers’ breathing patterns, the mean tracking error range was 0.78‐1.67 mm. Therefore, accurate lesion targeting requires individual quality assurance for each patient. PACS number(s): 87.55.D‐, 87.55.km, 87.55.Qr, 87.56.Fc PMID:27074474

Combining macula clinical signs and patient characteristics for age-related macular degeneration diagnosis: a machine learning approach.

PubMed

Fraccaro, Paolo; Nicolo, Massimo; Bonetto, Monica; Giacomini, Mauro; Weller, Peter; Traverso, Carlo Enrico; Prosperi, Mattia; OSullivan, Dympna

2015-01-27

To investigate machine learning methods, ranging from simpler interpretable techniques to complex (non-linear) "black-box" approaches, for automated diagnosis of Age-related Macular Degeneration (AMD). Data from healthy subjects and patients diagnosed with AMD or other retinal diseases were collected during routine visits via an Electronic Health Record (EHR) system. Patients' attributes included demographics and, for each eye, presence/absence of major AMD-related clinical signs (soft drusen, retinal pigment epitelium, defects/pigment mottling, depigmentation area, subretinal haemorrhage, subretinal fluid, macula thickness, macular scar, subretinal fibrosis). Interpretable techniques known as white box methods including logistic regression and decision trees as well as less interpreitable techniques known as black box methods, such as support vector machines (SVM), random forests and AdaBoost, were used to develop models (trained and validated on unseen data) to diagnose AMD. The gold standard was confirmed diagnosis of AMD by physicians. Sensitivity, specificity and area under the receiver operating characteristic (AUC) were used to assess performance. Study population included 487 patients (912 eyes). In terms of AUC, random forests, logistic regression and adaboost showed a mean performance of (0.92), followed by SVM and decision trees (0.90). All machine learning models identified soft drusen and age as the most discriminating variables in clinicians' decision pathways to diagnose AMD. Both black-box and white box methods performed well in identifying diagnoses of AMD and their decision pathways. Machine learning models developed through the proposed approach, relying on clinical signs identified by retinal specialists, could be embedded into EHR to provide physicians with real time (interpretable) support.

Proto-oncogene FBI-1 (Pokemon/ZBTB7A) Represses Transcription of the Tumor Suppressor Rb Gene via Binding Competition with Sp1 and Recruitment of Co-repressors*S⃞

PubMed Central

Jeon, Bu-Nam; Yoo, Jung-Yoon; Choi, Won-Il; Lee, Choong-Eun; Yoon, Ho-Geun; Hur, Man-Wook

2008-01-01

FBI-1 (also called Pokemon/ZBTB7A) is a BTB/POZ-domain Krüppel-like zinc-finger transcription factor. Recently, FBI-1 was characterized as a proto-oncogenic protein, which represses tumor suppressor ARF gene transcription. The expression of FBI-1 is increased in many cancer tissues. We found that FBI-1 potently represses transcription of the Rb gene, a tumor suppressor gene important in cell cycle arrest. FBI-1 binds to four GC-rich promoter elements (FREs) located at bp –308 to –188 of the Rb promoter region. The Rb promoter also contains two Sp1 binding sites: GC-box 1 (bp –65 to –56) and GC-box 2 (bp –18 to –9), the latter of which is also bound by FBI-1. We found that FRE3 (bp –244 to –236) is also a Sp1 binding element. FBI-1 represses transcription of the Rb gene not only by binding to the FREs, but also by competing with Sp1 at the GC-box 2 and the FRE3. By binding to the FREs and/or the GC-box, FBI-1 represses transcription of the Rb gene through its POZ-domain, which recruits a co-repressor-histone deacetylase complex and deacetylates histones H3 and H4 at the Rb gene promoter. FBI-1 inhibits C2C12 myoblast cell differentiation by repressing Rb gene expression. PMID:18801742

Temperature characteristics of winter roost-sites for birds and mammals: tree cavities and anthropogenic alternatives

NASA Astrophysics Data System (ADS)

Grüebler, Martin U.; Widmer, Silv; Korner-Nievergelt, Fränzi; Naef-Daenzer, Beat

2014-07-01

The microclimate of potential roost-sites is likely to be a crucial determinant in the optimal roost-site selection of endotherms, in particular during the winter season of temperate zones. Available roost-sites for birds and mammals in European high trunk orchards are mainly tree cavities, wood stacks and artificial nest boxes. However, little is known about the microclimatic patterns inside cavities and thermal advantages of using these winter roost-sites. Here, we simultaneously investigate the thermal patterns of winter roost-sites in relation to winter ambient temperature and their insulation capacity. While tree cavities and wood stacks strongly buffered the daily cycle of temperature changes, nest boxes showed low buffering capacity. The buffering effect of tree cavities was stronger at extreme ambient temperatures compared to temperatures around zero. Heat sources inside roosts amplified Δ T (i.e., the difference between inside and outside temperatures), particularly in the closed roosts of nest boxes and tree cavities, and less in the open wood stacks with stronger circulation of air. Positive Δ T due to the installation of a heat source increased in cold ambient temperatures. These results suggest that orchard habitats in winter show a spatiotemporal mosaic of sites providing different thermal benefits varying over time and in relation to ambient temperatures. At cold temperatures tree cavities provide significantly higher thermal benefits than nest boxes or wood stacks. Thus, in winter ecology of hole-using endotherms, the availability of tree cavities may be an important characteristic of winter habitat quality.

Mortality of riparian box elder from sediment mobilization and extended inundation

USGS Publications Warehouse

Friedman, Jonathan M.; Auble, Gregor T.

1999-01-01

To explore how high flows limit the streamward extent of riparian vegetation we quantified the effects of sediment mobilization and extended inundation on box elder (Acer negundo) saplings along the cobble-bed Gunnison River in Black Canyon of the Gunnison National Monument, Colorado, USA. We counted and aged box elders in 144 plots of 37.2 m2, and combined a hydraulic model with the hydrologic record to determine the maximum shear stress and number of growing-season days inundated for each plot in each year of the record. We quantified the effects of the two mortality factors by calculating the extreme values survived during the lifetime of trees sampled in 1994 and by recounting box elders in the plots following a high flow in 1995. Both mortality factors can be modeled as threshold functions; box elders are killed either by inundation for more than 85 days during the growing season or by shear stress that exceeds the critical value for mobilization of the underlying sediment particles. Construction of upstream reservoirs in the 1960s and 1970s reduced the proportion of the canyon bottom annually cleared of box elders by high flows. Furthermore, because the dams decreased the magnitude of high flows more than their duration, flow regulation has decreased the importance of sediment mobilization relative to extended inundation. We use the threshold functions and cross-section data to develop a response surface predicting the proportion of the canyon bottom cleared at any combination of flow magnitude and duration. This response surface allows vegetation removal to be incorporated into quantitative multi-objective water management decisions.

The Arabidopsis COP9 SIGNALOSOME INTERACTING F-BOX KELCH 1 protein forms an SCF ubiquitin ligase and regulates hypocotyl elongation.

PubMed

Franciosini, Anna; Lombardi, Benedetta; Iafrate, Silvia; Pecce, Valeria; Mele, Giovanni; Lupacchini, Leonardo; Rinaldi, Gianmarco; Kondou, Youichi; Gusmaroli, Giuliana; Aki, Shiori; Tsuge, Tomohiko; Deng, Xing-Wang; Matsui, Minami; Vittorioso, Paola; Costantino, Paolo; Serino, Giovanna

2013-09-01

The regulation of protein turnover by the ubiquitin proteasome system (UPS) is a major posttranslational mechanism in eukaryotes. One of the key components of the UPS, the COP9 signalosome (CSN), regulates 'cullin-ring' E3 ubiquitin ligases. In plants, CSN participates in diverse cellular and developmental processes, ranging from light signaling to cell cycle control. In this work, we isolated a new plant-specific CSN-interacting F-box protein, which we denominated CFK1 (COP9 INTERACTING F-BOX KELCH 1). We show that, in Arabidopsis thaliana, CFK1 is a component of a functional ubiquitin ligase complex. We also show that CFK1 stability is regulated by CSN and by proteasome-dependent proteolysis, and that light induces accumulation of the CFK1 transcript in the hypocotyl. Analysis of CFK1 knockdown, mutant, and overexpressing seedlings indicates that CFK1 promotes hypocotyl elongation by increasing cell size. Reduction of CSN levels enhances the short hypocotyl phenotype of CFK1-depleted seedlings, while complete loss of CSN activity suppresses the long-hypocotyl phenotype of CFK1-overexpressing seedlings. We propose that CFK1 (and its regulation by CSN) is a novel component of the cellular mechanisms controlling hypocotyl elongation.

A novel E2 box-GATA element modulates Cdc6 transcription during human cells polyploidization

PubMed Central

Vilaboa, Nuria; Bermejo, Rodrigo; Martinez, Pilar; Bornstein, Rafael; Calés, Carmela

2004-01-01

Cdc6 is a key regulator of the strict alternation of S and M phases during the mitotic cell cycle. In mammalian and plant cells that physiologically become polyploid, cdc6 is transcriptionally and post-translationally regulated. We have recently reported that Cdc6 levels are maintained in megakaryoblastic HEL cells, but severely downregulated by ectopic expression of transcriptional repressor Drosophila melanogaster escargot. Here, we show that cdc6 promoter activity is upregulated during megakaryocytic differentiation of HEL endoreplicating cells, and that Escargot interferes with such activation. Transactivation experiments showed that a 1.7 kb region located at 2800 upstream cdc6 transcription initiation site behaved as a potent enhancer in endoreplicating cells only. This activity was mainly dependent on a novel cis-regulatory element composed by an E2 box overlapping a GATA motif. Ectopic Escargot could bind this regulatory element in vitro and endogenous GATA-1 and E2A formed specific complexes in megakaryoblastic cells as well as in primary megakaryocytes. Chromatin Immunoprecipitation analysis revealed that both transcription factors were occupying the E2 box/GATA site in vivo. Altogether, these data suggest that cdc6 expression could be actively maintained during megakaryocytic differentiation through transcriptional mechanisms involving specific cis- and trans-regulatory elements. PMID:15590906

Advanced Technology Lifecycle Analysis System (ATLAS) Technology Tool Box (TTB)

NASA Technical Reports Server (NTRS)

Doyle, Monica; ONeil, Daniel A.; Christensen, Carissa B.

2005-01-01

The Advanced Technology Lifecycle Analysis System (ATLAS) is a decision support tool designed to aid program managers and strategic planners in determining how to invest technology research and development dollars. It is an Excel-based modeling package that allows a user to build complex space architectures and evaluate the impact of various technology choices. ATLAS contains system models, cost and operations models, a campaign timeline and a centralized technology database. Technology data for all system models is drawn from a common database, the ATLAS Technology Tool Box (TTB). The TTB provides a comprehensive, architecture-independent technology database that is keyed to current and future timeframes.

Prediction of AL and Dst Indices from ACE Measurements Using Hybrid Physics/Black-Box Techniques

NASA Astrophysics Data System (ADS)

Spencer, E.; Rao, A.; Horton, W.; Mays, L.

2008-12-01

ACE measurements of the solar wind velocity, IMF and proton density is used to drive a hybrid Physics/Black- Box model of the nightside magnetosphere. The core physics is contained in a low order nonlinear dynamical model of the nightside magnetosphere called WINDMI. The model is augmented by wavelet based nonlinear mappings between the solar wind quantities and the input into the physics model, followed by further wavelet based mappings of the model output field aligned currents onto the ground based magnetometer measurements of the AL index and Dst index. The black box mappings are introduced at the input stage to account for uncertainties in the way the solar wind quantities are transported from the ACE spacecraft at L1 to the magnetopause. Similar mappings are introduced at the output stage to account for a spatially and temporally varying westward auroral electrojet geometry. The parameters of the model are tuned using a genetic algorithm, and trained using the large geomagnetic storm dataset of October 3-7 2000. It's predictive performance is then evaluated on subsequent storm datasets, in particular the April 15-24 2002 storm. This work is supported by grant NSF 7020201

Use of segmented constrained layer damping treatment for improved helicopter aeromechanical stability

NASA Astrophysics Data System (ADS)

Liu, Qiang; Chattopadhyay, Aditi; Gu, Haozhong; Liu, Qiang; Chattopadhyay, Aditi; Zhou, Xu

2000-08-01

The use of a special type of smart material, known as segmented constrained layer (SCL) damping, is investigated for improved rotor aeromechanical stability. The rotor blade load-carrying member is modeled using a composite box beam with arbitrary wall thickness. The SCLs are bonded to the upper and lower surfaces of the box beam to provide passive damping. A finite-element model based on a hybrid displacement theory is used to accurately capture the transverse shear effects in the composite primary structure and the viscoelastic and the piezoelectric layers within the SCL. Detailed numerical studies are presented to assess the influence of the number of actuators and their locations for improved aeromechanical stability. Ground and air resonance analysis models are implemented in the rotor blade built around the composite box beam with segmented SCLs. A classic ground resonance model and an air resonance model are used in the rotor-body coupled stability analysis. The Pitt dynamic inflow model is used in the air resonance analysis under hover condition. Results indicate that the surface bonded SCLs significantly increase rotor lead-lag regressive modal damping in the coupled rotor-body system.

The Rice B-Box Zinc Finger Gene Family: Genomic Identification, Characterization, Expression Profiling and Diurnal Analysis

PubMed Central

Huang, Jianyan; Zhao, Xiaobo; Weng, Xiaoyu; Wang, Lei; Xie, Weibo

2012-01-01

Background The B-box (BBX) -containing proteins are a class of zinc finger proteins that contain one or two B-box domains and play important roles in plant growth and development. The Arabidopsis BBX gene family has recently been re-identified and renamed. However, there has not been a genome-wide survey of the rice BBX (OsBBX) gene family until now. Methodology/Principal Findings In this study, we identified 30 rice BBX genes through a comprehensive bioinformatics analysis. Each gene was assigned a uniform nomenclature. We described the chromosome localizations, gene structures, protein domains, phylogenetic relationship, whole life-cycle expression profile and diurnal expression patterns of the OsBBX family members. Based on the phylogeny and domain constitution, the OsBBX gene family was classified into five subfamilies. The gene duplication analysis revealed that only chromosomal segmental duplication contributed to the expansion of the OsBBX gene family. The expression profile of the OsBBX genes was analyzed by Affymetrix GeneChip microarrays throughout the entire life-cycle of rice cultivar Zhenshan 97 (ZS97). In addition, microarray analysis was performed to obtain the expression patterns of these genes under light/dark conditions and after three phytohormone treatments. This analysis revealed that the expression patterns of the OsBBX genes could be classified into eight groups. Eight genes were regulated under the light/dark treatments, and eleven genes showed differential expression under at least one phytohormone treatment. Moreover, we verified the diurnal expression of the OsBBX genes using the data obtained from the Diurnal Project and qPCR analysis, and the results indicated that many of these genes had a diurnal expression pattern. Conclusions/Significance The combination of the genome-wide identification and the expression and diurnal analysis of the OsBBX gene family should facilitate additional functional studies of the OsBBX genes. PMID:23118960

Filling box stratification fed by a gravity current

NASA Astrophysics Data System (ADS)

Hogg, Charlie; Huppert, Herbert; Imberger, Jorg

2012-11-01

Fluids in confined basins can be stratified by the filling box mechanism. The source of dense fluid in geophysical applications, such as a cold river entering a warmer lake, can be a gravity current running over a shallow slope. Filling box models are often, however, based on the dynamics of vertically falling, unconfined, plumes which entrain fluid by a different mechanism to gravity currents on shallow slopes. Laboratory tank experiments of a filling box fed by a gravity current running over a shallow slope were carried out using a dye attenuation technique to investigate the development of the stratification of the ambient. These results demonstrate the differences in the stratification generated by a gravity current compared to that generated by a plume and demonstrate the nature of entrainment into gravity currents on shallow slopes.

An Experimental Study of an Ultra-Mobile Vehicle for Off-Road Transportation.

DTIC Science & Technology

1984-09-01

commenced with the * aluminum plate from which the links will be fabricated having been cut out. Welding of the leg links is-in progress. The leg boxes , which...Control forkoulh-Ternain Locomotion i Multilegged Robot Vehicle, TEX di s~s- rt o n, March, 1984.- 28. Ozguner, F. and Kao, M.L., "A Multimicroprocessor...efficient structure. 3.3.1 Body Model The body is modelled as a hexahedral box with the top plane wider than the bottom plane, which allows the abduction

X box binding protein XBP-1s transactivates the Kaposi's sarcoma-associated herpesvirus (KSHV) ORF50 promoter, linking plasma cell differentiation to KSHV reactivation from latency.

PubMed

Wilson, Sam J; Tsao, Edward H; Webb, Benjamin L J; Ye, Hongtao; Dalton-Griffin, Lucy; Tsantoulas, Christoforos; Gale, Catherine V; Du, Ming-Qing; Whitehouse, Adrian; Kellam, Paul

2007-12-01

Reactivation of lytic replication from viral latency is a defining property of all herpesviruses. Despite this, the authentic physiological cues for the latent-lytic switch are unclear. Such cues should ensure that viral lytic replication occurs under physiological conditions, predominantly in sites which facilitate transmission to permissive uninfected cells and new susceptible hosts. Kaposi's sarcoma-associated herpesvirus (KSHV) is associated with the B-cell neoplasm primary effusion lymphoma (PEL), in which the virus remains latent. We have previously shown that PEL cells have the gene expression profile and immunophenotype of cycling preplasma cells (plasmablasts). Here, we show that the highly active spliced isoform of plasma cell transcription factor X box binding protein 1 (XBP-1s) is a lytic switch for KSHV. XBP-1s is normally absent in PEL, but the induction of endoplasmic reticulum stress leads to XBP-1s generation, plasma cell-like differentiation, and lytic reactivation of KSHV. XBP-1s binds to and activates the KSHV immediate-early gene ORF50 and synergizes with the ORF50 gene product RTA to induce a full lytic cycle. These data suggest that KSHV remains latent until B-cell terminal differentiation into plasma cells, the transcriptional environment of which provides the physiological "lytic switch" through XBP-1s. This links B-cell terminal differentiation to KSHV lytic reactivation.

Lower Bound on the Mean Square Displacement of Particles in the Hard Disk Model

NASA Astrophysics Data System (ADS)

Richthammer, Thomas

2016-08-01

The hard disk model is a 2D Gibbsian process of particles interacting via pure hard core repulsion. At high particle density the model is believed to show orientational order, however, it is known not to exhibit positional order. Here we investigate to what extent particle positions may fluctuate. We consider a finite volume version of the model in a box of dimensions 2 n × 2 n with arbitrary boundary configuration, and we show that the mean square displacement of particles near the center of the box is bounded from below by c log n. The result generalizes to a large class of models with fairly arbitrary interaction.

Owl Monkeys (Aotus nigriceps and A. infulatus) Follow Routes Instead of Food-Related Cues during Foraging in Captivity

PubMed Central

da Costa, Renata Souza; Bicca-Marques, Júlio César

2014-01-01

Foraging at night imposes different challenges from those faced during daylight, including the reliability of sensory cues. Owl monkeys (Aotus spp.) are ideal models among anthropoids to study the information used during foraging at low light levels because they are unique by having a nocturnal lifestyle. Six Aotus nigriceps and four A. infulatus individuals distributed into five enclosures were studied for testing their ability to rely on olfactory, visual, auditory, or spatial and quantitative information for locating food rewards and for evaluating the use of routes to navigate among five visually similar artificial feeding boxes mounted in each enclosure. During most experiments only a single box was baited with a food reward in each session. The baited box changed randomly throughout the experiment. In the spatial and quantitative information experiment there were two baited boxes varying in the amount of food provided. These baited boxes remained the same throughout the experiment. A total of 45 sessions (three sessions per night during 15 consecutive nights) per enclosure was conducted in each experiment. Only one female showed a performance suggestive of learning of the usefulness of sight to locate the food reward in the visual information experiment. Subjects showed a chance performance in the remaining experiments. All owl monkeys showed a preference for one box or a subset of boxes to inspect upon the beginning of each experimental session and consistently followed individual routes among feeding boxes. PMID:25517894

Owl monkeys (Aotus nigriceps and A. infulatus) follow routes instead of food-related cues during foraging in captivity.

PubMed

da Costa, Renata Souza; Bicca-Marques, Júlio César

2014-01-01

Foraging at night imposes different challenges from those faced during daylight, including the reliability of sensory cues. Owl monkeys (Aotus spp.) are ideal models among anthropoids to study the information used during foraging at low light levels because they are unique by having a nocturnal lifestyle. Six Aotus nigriceps and four A. infulatus individuals distributed into five enclosures were studied for testing their ability to rely on olfactory, visual, auditory, or spatial and quantitative information for locating food rewards and for evaluating the use of routes to navigate among five visually similar artificial feeding boxes mounted in each enclosure. During most experiments only a single box was baited with a food reward in each session. The baited box changed randomly throughout the experiment. In the spatial and quantitative information experiment there were two baited boxes varying in the amount of food provided. These baited boxes remained the same throughout the experiment. A total of 45 sessions (three sessions per night during 15 consecutive nights) per enclosure was conducted in each experiment. Only one female showed a performance suggestive of learning of the usefulness of sight to locate the food reward in the visual information experiment. Subjects showed a chance performance in the remaining experiments. All owl monkeys showed a preference for one box or a subset of boxes to inspect upon the beginning of each experimental session and consistently followed individual routes among feeding boxes.

A fast identification algorithm for Box-Cox transformation based radial basis function neural network.

PubMed

Hong, Xia

2006-07-01

In this letter, a Box-Cox transformation-based radial basis function (RBF) neural network is introduced using the RBF neural network to represent the transformed system output. Initially a fixed and moderate sized RBF model base is derived based on a rank revealing orthogonal matrix triangularization (QR decomposition). Then a new fast identification algorithm is introduced using Gauss-Newton algorithm to derive the required Box-Cox transformation, based on a maximum likelihood estimator. The main contribution of this letter is to explore the special structure of the proposed RBF neural network for computational efficiency by utilizing the inverse of matrix block decomposition lemma. Finally, the Box-Cox transformation-based RBF neural network, with good generalization and sparsity, is identified based on the derived optimal Box-Cox transformation and a D-optimality-based orthogonal forward regression algorithm. The proposed algorithm and its efficacy are demonstrated with an illustrative example in comparison with support vector machine regression.

An improved portmanteau test for autocorrelated errors in interrupted time-series regression models.

PubMed

Huitema, Bradley E; McKean, Joseph W

2007-08-01

A new portmanteau test for autocorrelation among the errors of interrupted time-series regression models is proposed. Simulation results demonstrate that the inferential properties of the proposed Q(H-M) test statistic are considerably more satisfactory than those of the well known Ljung-Box test and moderately better than those of the Box-Pierce test. These conclusions generally hold for a wide variety of autoregressive (AR), moving averages (MA), and ARMA error processes that are associated with time-series regression models of the form described in Huitema and McKean (2000a, 2000b).

Assessment of environmental impacts part one. Intervention analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hipel, Keith William; Lettenmaier, Dennis P.; McLeod, A. Ian

The use of intervention analysis as a statistical method of gauging the effects of environmental changes is discussed. The Box-Jenkins model, serves as the basis for the intervention analysis methodology. Environmental studies of the Aswan Dam, the South Saskatchewan River, and a forest fire near the Pipers Hole River, Canada, are included as case studies in which intervention analysis was employed. Methods of data collection for intervention analysis are found to have a significant impact on model reliability; effective data collection processes for the Box-Jenkins model are provided. (15 graphs, 27 references, 2 tables)

Model tests and numerical analyses on horizontal impedance functions of inclined single piles embedded in cohesionless soil

NASA Astrophysics Data System (ADS)

Goit, Chandra Shekhar; Saitoh, Masato

2013-03-01

Horizontal impedance functions of inclined single piles are measured experimentally for model soil-pile systems with both the effects of local soil nonlinearity and resonant characteristics. Two practical pile inclinations of 5° and 10° in addition to a vertical pile embedded in cohesionless soil and subjected to lateral harmonic pile head loadings for a wide range of frequencies are considered. Results obtained with low-to-high amplitude of lateral loadings on model soil-pile systems encased in a laminar shear box show that the local nonlinearities have a profound impact on the horizontal impedance functions of piles. Horizontal impedance functions of inclined piles are found to be smaller than the vertical pile and the values decrease as the angle of pile inclination increases. Distinct values of horizontal impedance functions are obtained for the `positive' and `negative' cycles of harmonic loadings, leading to asymmetric force-displacement relationships for the inclined piles. Validation of these experimental results is carried out through three-dimensional nonlinear finite element analyses, and the results from the numerical models are in good agreement with the experimental data. Sensitivity analyses conducted on the numerical models suggest that the consideration of local nonlinearity at the vicinity of the soil-pile interface influence the response of the soil-pile systems.

Static internal performance of a single-engine onaxisymmetric-nozzle vaned-thrust-reverser design with thrust modulation capabilities

NASA Technical Reports Server (NTRS)

Leavitt, L. D.; Burley, J. R., II

1985-01-01

An investigation has been conducted at wind-off conditions in the stati-test facility of the Langley 16-Foot Transonic Tunnel. The tests were conducted on a single-engine reverser configuration with partial and full reverse-thrust modulation capabilities. The reverser design had four ports with equal areas. These ports were angled outboard 30 deg from the vertical impart of a splay angle to the reverse exhaust flow. This splaying of reverser flow was intended to prevent impingement of exhaust flow on empennage surfaces and to help avoid inlet reingestion of exhaust gas when the reverser is integrated into an actual airplane configuration. External vane boxes were located directly over each of the four ports to provide variation of reverser efflux angle from 140 deg to 26 deg (measured forward from the horizontal reference axis). The reverser model was tested with both a butterfly-type inner door and an internal slider door to provide area control for each individual port. In addition, main nozzle throat area and vector angle were varied to examine various methods of modulating thrust levels. Other model variables included vane box configuration (four or six vanes per box), orientation of external vane boxes with respect to internal port walls (splay angle shims), and vane box sideplates. Nozzle pressure ratio was varied from 2.0 approximately 7.0.

Advanced solar box and flat plate collector cookers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grupp, M.; Bergler, H.

Several new solar cooker systems have been developed at Synopsis during the last years: advanced box type cookers, featuring an optimized heat transfer from the absorber into the cooking vessel; flat plate cookers, based on a particular two-way collector with air as transfer fluid; flat plate cookers with heat-pipe transfer; specialized cookers for the baking of bread and flat bread. The working principle of these cookers is described, the structure of a thermal simulation model and results of thermal tests are presented. The results of the first year of local production and use of advanced boxes in India are reported.

Box C/D sRNA stem ends act as stabilizing anchors for box C/D di-sRNPs.

PubMed

Yip, W S Vincent; Shigematsu, Hideki; Taylor, David W; Baserga, Susan J

2016-10-14

Ribosomal RNA (rRNA) modifications are essential for ribosome function in all cellular organisms. Box C/D small (nucleolar) ribonucleoproteins [s(no)RNPs] catalyze 2'-O-methylation, one rRNA modification type in Eukarya and Archaea. Negatively stained electron microscopy (EM) models of archaeal box C/D sRNPs have demonstrated the dimeric sRNP (di-sRNP) architecture, which has been corroborated by nuclear magnetic resonance (NMR) studies. Due to limitations of the structural techniques, the orientation of the box C/D sRNAs has remained unclear. Here, we have used cryo-EM to elucidate the sRNA orientation in a M. jannaschii box C/D di-sRNP. The cryo-EM reconstruction suggests a parallel orientation of the two sRNAs. Biochemical and structural analyses of sRNPs assembled with mutant sRNAs indicate a potential interaction between the sRNA stem ends. Our results suggest that the parallel arrangement of the sRNAs juxtaposes their stem ends into close proximity to allow for a stabilizing interaction that helps maintain the di-sRNP architecture. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Vibration signature analysis of multistage gear transmission

NASA Technical Reports Server (NTRS)

Choy, F. K.; Tu, Y. K.; Savage, M.; Townsend, D. P.

1989-01-01

An analysis is presented for multistage multimesh gear transmission systems. The analysis predicts the overall system dynamics and the transmissibility to the gear box or the enclosed structure. The modal synthesis approach of the analysis treats the uncoupled lateral/torsional model characteristics of each stage or component independently. The vibration signature analysis evaluates the global dynamics coupling in the system. The method synthesizes the interaction of each modal component or stage with the nonlinear gear mesh dynamics and the modal support geometry characteristics. The analysis simulates transient and steady state vibration events to determine the resulting torque variations, speeds, changes, rotor imbalances, and support gear box motion excitations. A vibration signature analysis examines the overall dynamic characteristics of the system, and the individual model component responses. The gear box vibration analysis also examines the spectral characteristics of the support system.

Spatially inhomogeneous acceleration of electrons in solar flares

NASA Astrophysics Data System (ADS)

Stackhouse, Duncan J.; Kontar, Eduard P.

2018-04-01

The imaging spectroscopy capabilities of the Reuven Ramaty high energy solar spectroscopic imager (RHESSI) enable the examination of the accelerated electron distribution throughout a solar flare region. In particular, it has been revealed that the energisation of these particles takes place over a region of finite size, sometimes resolved by RHESSI observations. In this paper, we present, for the first time, a spatially distributed acceleration model and investigate the role of inhomogeneous acceleration on the observed X-ray emission properties. We have modelled transport explicitly examining scatter-free and diffusive transport within the acceleration region and compare with the analytic leaky-box solution. The results show the importance of including this spatial variation when modelling electron acceleration in solar flares. The presence of an inhomogeneous, extended acceleration region produces a spectral index that is, in most cases, different from the simple leaky-box prediction. In particular, it results in a generally softer spectral index than predicted by the leaky-box solution, for both scatter-free and diffusive transport, and thus should be taken into account when modelling stochastic acceleration in solar flares.

Experimental investigation on discharge coefficient for a combined broad crested weir-box culvert structure

NASA Astrophysics Data System (ADS)

Guven, A.; Hassan, M.; Sabir, Shahin

2013-09-01

This study investigates the hydraulic characteristics of simultaneous flow over broad crested weir and through box (square) culverts experimentally. The variation of discharge coefficient (Cd) of the combined structure with various affective parameters such as upstream head, length of culvert, culvert inlet shape, culvert internal dimension, weir crest height, weir side slope angle, and weir width was analyzed. For this purpose 12 glass models of combined broad crested weirs and box culverts were manufactured and tested in a laboratory flume of 12 m. Discharge coefficient predicting equations were developed as a function of the dimensionless terms. The overall results showed that Cd increases as the ratio of the total head of water above the weir crest to the height of the weir crest H/P increases for all the models and for each flow state (weir and combined). Cd values increased as the head increased for all the models tested as culvert flow only, and also with decreasing of the angle between crest of the weir with the sides.

The five-box method: The "four-box method" for the Catholic physician.

PubMed

Marugg, Lindsey; Atkinson, Marie-Noelle; Fernandes, Ashley

2014-11-01

The traditional ethical model of the "Four-Box Method" can be adapted to integrate the perspective of a Catholic physician. In an increasingly secularist environment, medical students and physicians are often asked to "leave religious beliefs at the door" and not consider the care and stewardship of our own morality and involvement as a provider. We reject this view. A patient's own religious and moral beliefs should be respected to the extent that they do not destroy our own; for us, the Catholic viewpoint can shine a light into dark corners and aid us in translating true things to patients of any religion. We analyzed a sample case in five different categories: medical indications, patient preferences, quality of life, contextual features, and the Catholic context. We explored how to methodically integrate the perspective of a Catholic physician into the analysis of this case to make the best decision for the patients. We felt that we were successfully able to integrate this perspective and create a "fifth box" based on the principles of Catholic social teaching. There were also points during the analysis that the perspective of the Catholic physician was integrated into the discussion of medical indications, proving to us that the "Catholic perspective" cannot be just put in one box either. The traditional ethical model of the "four-box method" can be adapted to integrate the perspective of a Catholic physician. In an increasingly secularist environment, medical students and physicians are often asked to "leave religious beliefs at the door" and not consider the care and stewardship of our own morality and involvement as a provider. We reject this view. A patient's own religious and moral beliefs should be respected to the extent that they do not destroy our own; for us, the Catholic viewpoint can shine a light into dark corners and aid us in translating true things to patients of any religion. By expanding to a "fifth box" of Catholic social teaching, the Catholic physician finds a way to methodically analyze an ethical scenario. This case study is an example of this type of "five-box" analysis.

A weighting lysimeter for a laboratory experiment on water and energy fluxes measurements and hydrological models verification

NASA Astrophysics Data System (ADS)

Corbari, Chiara; paleari, roberto; mantovani, federico; tarro, stefano; mancini, marco

2017-04-01

Weighting lysimeters allow a direct measurement of water loss from the soil, determining the soil water balance, and thus providing an interesting tool to validate hydrological models. Lysimeters, which world originates from the greek words "lysis" (movement) and "metron" (to measure) have been used to measure percolation of water through the soils for over 300 years. The aim of this study is twofold: 1) to perform water and energy flux measurements under different meteorological conditions, irrigation practice (surface flood, drip and groundwater capillary rise), and soil coverage (bare soil and basil crop), 2) to verify hydrological model FEST-EWB parameterization at the lysimeter scale. A weighting lysimeter has been constructed in the Hydraulic Laboratory of Politecnico di Milano. It consists of a steel box of 1.5 x 1.5 x 1 m containing reconstructed soil. The box is mounted on a scale with four load cells with a nominal weight of 6000 kg and a precision of 0,5 kg. The lysimeter is fully instrumented to measure all the main components of the hydrological cycle. Profiles of soil moisture and temperature are provided by 7 probes; ground heat flux is measured by a heat flux plate and two thermocouples; the drainage flux is measured by a tipping bucket rain gauge; the four components of radiation are provided by a net radiometer; air temperature and humidity are measured by a thermo-hygrometer. Data are collected every 10 minutes on a datalogger. A thermal camera is also installed to provide accurate maps of land surface temperature. The different instruments have been subjected to a rigorous calibration process. A low cost station is also installed based on an Arduino micro-controller measuring soil moisture and temperature, air humidity and temperature and solar radiation. The idea is to understand whether low cost instruments can be used to monitor the fundamental hydrological variables. The measured fluxes (e.g. evapotranspiration, soil moisture, land surface temperature) are then used to verify the correctness of the hydrological model FEST-EWB parameterization. A general good accuracy of 2-6 % between observed and modeled fluxes is obtained.

Retrieval of NO2 stratospheric profiles from ground-based zenith-sky uv-visible measurements at 60°N

NASA Astrophysics Data System (ADS)

Hendrick, F.; van Roozendael, M.; Lambert, J.-C.; Fayt, C.; Hermans, C.; de Mazière, M.

2003-04-01

Nitrogen dioxide (NO_2) plays an important role in controlling ozone abundances in the stratosphere, either directly through the NOx (NO+NO_2) catalytic cycle, either indirectly by reaction with the radical ClO to form the reservoir species ClONO_2. In this presentation, NO_2 stratospheric profiles are retrieved from ground-based UV-visible NO_2 slant column abundances measured since 1998 at the complementary NDSC station of Harestua (Norway, 60^oN). The retrieval algorithm is based on the Rodgers optimal estimation inversion method and a forward model consisting in the IASB-BIRA stacked box photochemical model PSCBOX coupled to the radiative transfer package UVspec/DISORT. This algorithm has been applied to a set of about 50 sunrises and sunsets for which spatially and temporally coincident NO_2 measurements made by the HALOE (Halogen Occultation Experiment) instrument on board the Upper Atmosphere Research Satellite (UARS) are available. The consistency between retrieved and HALOE profiles is discussed in term of the different seasonal conditions investigated which are spring with and without chlorine activation, summer, and fall.

Predictive habitat models derived from nest-box occupancy for the endangered Carolina northern flying squirrel in the southern Appalachians

Treesearch

W. Mark Ford; Andrew M. Evans; Richard H. Odom; Jane L. Rodrigue; Christine A. Kelly; Nicole Abaid; Corinne A. Diggins; Douglas Newcomb

2015-01-01

In the southern Appalachians, artificial nest-boxes are used to survey for the endangered Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus), a disjunct subspecies associated with high elevation (>1385 m) forests. Using environmental parameters diagnostic of squirrel habitat, we created 35 a priori occupancy...

Prototyping the Use of Dispersion Models to Predict Ground Concentrations During Burning of Deployed Military Waste

DTIC Science & Technology

2012-03-22

Fabric 3.85% Polypropylene (PP) (Class 5 plastics, soda cups, yogurt boxes, syrup bottles, prescription bottles) 1.32% Yard waste 5.67% PVC (Class 3...plastics, milk jugs) 1.23% Cardboard 31.33% Polypropylene (PP) (Class 5 plastics, soda cups, yogurt boxes, syrup bottles, prescription bottles) 0.62

A random effects meta-analysis model with Box-Cox transformation.

PubMed

Yamaguchi, Yusuke; Maruo, Kazushi; Partlett, Christopher; Riley, Richard D

2017-07-19

In a random effects meta-analysis model, true treatment effects for each study are routinely assumed to follow a normal distribution. However, normality is a restrictive assumption and the misspecification of the random effects distribution may result in a misleading estimate of overall mean for the treatment effect, an inappropriate quantification of heterogeneity across studies and a wrongly symmetric prediction interval. We focus on problems caused by an inappropriate normality assumption of the random effects distribution, and propose a novel random effects meta-analysis model where a Box-Cox transformation is applied to the observed treatment effect estimates. The proposed model aims to normalise an overall distribution of observed treatment effect estimates, which is sum of the within-study sampling distributions and the random effects distribution. When sampling distributions are approximately normal, non-normality in the overall distribution will be mainly due to the random effects distribution, especially when the between-study variation is large relative to the within-study variation. The Box-Cox transformation addresses this flexibly according to the observed departure from normality. We use a Bayesian approach for estimating parameters in the proposed model, and suggest summarising the meta-analysis results by an overall median, an interquartile range and a prediction interval. The model can be applied for any kind of variables once the treatment effect estimate is defined from the variable. A simulation study suggested that when the overall distribution of treatment effect estimates are skewed, the overall mean and conventional I 2 from the normal random effects model could be inappropriate summaries, and the proposed model helped reduce this issue. We illustrated the proposed model using two examples, which revealed some important differences on summary results, heterogeneity measures and prediction intervals from the normal random effects model. The random effects meta-analysis with the Box-Cox transformation may be an important tool for examining robustness of traditional meta-analysis results against skewness on the observed treatment effect estimates. Further critical evaluation of the method is needed.

Evolving Waves and Turbulence in the Outer Corona and Inner Heliosphere: The Accelerating Expanding Box

NASA Astrophysics Data System (ADS)

Tenerani, Anna; Velli, Marco

2017-07-01

Alfvénic fluctuations in the solar wind display many properties reflecting an ongoing nonlinear cascade, e.g., a well-defined spectrum in frequency, together with some characteristics more commonly associated with the linear propagation of waves from the Sun, such as the variation of fluctuation amplitude with distance, dominated by solar wind expansion effects. Therefore, both nonlinearities and expansion must be included simultaneously in any successful model of solar wind turbulence evolution. Because of the disparate spatial scales involved, direct numerical simulations of turbulence in the solar wind represent an arduous task, especially if one wants to go beyond the incompressible approximation. Indeed, most simulations neglect solar wind expansion effects entirely. Here we develop a numerical model to simulate turbulent fluctuations from the outer corona to 1 au and beyond, including the sub-Alfvénic corona. The accelerating expanding box (AEB) extends the validity of previous expanding box models by taking into account both the acceleration of the solar wind and the inhomogeneity of background density and magnetic field. Our method incorporates a background accelerating wind within a magnetic field that naturally follows the Parker spiral evolution using a two-scale analysis in which the macroscopic spatial effect coupling fluctuations with background gradients becomes a time-dependent coupling term in a homogeneous box. In this paper we describe the AEB model in detail and discuss its main properties, illustrating its validity by studying Alfvén wave propagation across the Alfvén critical point.

Validation of finite element and boundary element methods for predicting structural vibration and radiated noise

NASA Technical Reports Server (NTRS)

Seybert, A. F.; Wu, X. F.; Oswald, Fred B.

1992-01-01

Analytical and experimental validation of methods to predict structural vibration and radiated noise are presented. A rectangular box excited by a mechanical shaker was used as a vibrating structure. Combined finite element method (FEM) and boundary element method (BEM) models of the apparatus were used to predict the noise radiated from the box. The FEM was used to predict the vibration, and the surface vibration was used as input to the BEM to predict the sound intensity and sound power. Vibration predicted by the FEM model was validated by experimental modal analysis. Noise predicted by the BEM was validated by sound intensity measurements. Three types of results are presented for the total radiated sound power: (1) sound power predicted by the BEM modeling using vibration data measured on the surface of the box; (2) sound power predicted by the FEM/BEM model; and (3) sound power measured by a sound intensity scan. The sound power predicted from the BEM model using measured vibration data yields an excellent prediction of radiated noise. The sound power predicted by the combined FEM/BEM model also gives a good prediction of radiated noise except for a shift of the natural frequencies that are due to limitations in the FEM model.

Influenza A Virus Polymerase Recruits the RNA Helicase DDX19 to Promote the Nuclear Export of Viral mRNAs

PubMed Central

Diot, Cédric; Fournier, Guillaume; Dos Santos, Mélanie; Magnus, Julie; Komarova, Anastasia; van der Werf, Sylvie; Munier, Sandie; Naffakh, Nadia

2016-01-01

Enhancing the knowledge of host factors that are required for efficient influenza A virus (IAV) replication is essential to address questions related to pathogenicity and to identify targets for antiviral drug development. Here we focused on the interplay between IAV and DExD-box RNA helicases (DDX), which play a key role in cellular RNA metabolism by remodeling RNA-RNA or RNA-protein complexes. We performed a targeted RNAi screen on 35 human DDX proteins to identify those involved in IAV life cycle. DDX19 was a major hit. In DDX19-depleted cells the accumulation of viral RNAs and proteins was delayed, and the production of infectious IAV particles was strongly reduced. We show that DDX19 associates with intronless, unspliced and spliced IAV mRNAs and promotes their nuclear export. In addition, we demonstrate an RNA-independent association between DDX19 and the viral polymerase, that is modulated by the ATPase activity of DDX19. Our results provide a model in which DDX19 is recruited to viral mRNAs in the nucleus of infected cells to enhance their nuclear export. Information gained from this virus-host interaction improves the understanding of both the IAV replication cycle and the cellular function of DDX19. PMID:27653209

Coupled Biogeochemical and Hydrodynamic Measurements over a Palauan Seagrass Bed: Can Seagrasses Mitigate Local Acidification Stress?

NASA Astrophysics Data System (ADS)

Hirsh, H.; Torres, W.; Shea, M.

2016-02-01

Interest in seagrass beds as a tool to locally mitigate ocean acidification is growing rapidly. Much of the interest in seagrasses is motivated by their root structure, which is able to sequester carbon over interannual and longer timescales. Far less is known about their biogeochemistry on shorter diel timescales, yet we know that diel cycle variation in CO2 chemistry on coral reefs can be quite substantial. Understanding short-term seagrass biogeochemistry is critical to evaluating if, and how, seagrasses may eventually be utilized to mitigate OA on coral reefs. We present the results of a high-resolution, 24-hour control volume experiment conducted in the Republic of Palau covering a 50m x 100m seagrass bed. Our dataset includes diel cycles of hydrodynamic (current profiles and turbulence), biogeochemical (pH, pCO2, TA, DIC, and O2), and environmental (temperature and salinity) parameters. We use these coupled hydrodynamic-biogeochemical measurements to estimate ecosystem metabolism and better quantify the capacity of seagrass to mitigate local acidification through the photosynthetic uptake of CO2. Combining our field observations with box model predictions allows us to gain better insight into the mechanisms that control seagrass metabolism and their ability to buffer CO2 for downstream corals.

A Large Complement of the Predicted Arabidopsis ARM Repeat Proteins Are Members of the U-Box E3 Ubiquitin Ligase Family1[w

PubMed Central

Mudgil, Yashwanti; Shiu, Shin-Han; Stone, Sophia L.; Salt, Jennifer N.; Goring, Daphne R.

2004-01-01

The Arabidopsis genome was searched to identify predicted proteins containing armadillo (ARM) repeats, a motif known to mediate protein-protein interactions in a number of different animal proteins. Using domain database predictions and models generated in this study, 108 Arabidopsis proteins were identified that contained a minimum of two ARM repeats with the majority of proteins containing four to eight ARM repeats. Clustering analysis showed that the 108 predicted Arabidopsis ARM repeat proteins could be divided into multiple groups with wide differences in their domain compositions and organizations. Interestingly, 41 of the 108 Arabidopsis ARM repeat proteins contained a U-box, a motif present in a family of E3 ligases, and these proteins represented the largest class of Arabidopsis ARM repeat proteins. In 14 of these U-box/ARM repeat proteins, there was also a novel conserved domain identified in the N-terminal region. Based on the phylogenetic tree, representative U-box/ARM repeat proteins were selected for further study. RNA-blot analyses revealed that these U-box/ARM proteins are expressed in a variety of tissues in Arabidopsis. In addition, the selected U-box/ARM proteins were found to be functional E3 ubiquitin ligases. Thus, these U-box/ARM proteins represent a new family of E3 ligases in Arabidopsis. PMID:14657406

A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family.

PubMed

Mudgil, Yashwanti; Shiu, Shin-Han; Stone, Sophia L; Salt, Jennifer N; Goring, Daphne R

2004-01-01

The Arabidopsis genome was searched to identify predicted proteins containing armadillo (ARM) repeats, a motif known to mediate protein-protein interactions in a number of different animal proteins. Using domain database predictions and models generated in this study, 108 Arabidopsis proteins were identified that contained a minimum of two ARM repeats with the majority of proteins containing four to eight ARM repeats. Clustering analysis showed that the 108 predicted Arabidopsis ARM repeat proteins could be divided into multiple groups with wide differences in their domain compositions and organizations. Interestingly, 41 of the 108 Arabidopsis ARM repeat proteins contained a U-box, a motif present in a family of E3 ligases, and these proteins represented the largest class of Arabidopsis ARM repeat proteins. In 14 of these U-box/ARM repeat proteins, there was also a novel conserved domain identified in the N-terminal region. Based on the phylogenetic tree, representative U-box/ARM repeat proteins were selected for further study. RNA-blot analyses revealed that these U-box/ARM proteins are expressed in a variety of tissues in Arabidopsis. In addition, the selected U-box/ARM proteins were found to be functional E3 ubiquitin ligases. Thus, these U-box/ARM proteins represent a new family of E3 ligases in Arabidopsis.

Local box-counting dimensions of discrete quantum eigenvalue spectra: Analytical connection to quantum spectral statistics

NASA Astrophysics Data System (ADS)

Sakhr, Jamal; Nieminen, John M.

2018-03-01

Two decades ago, Wang and Ong, [Phys. Rev. A 55, 1522 (1997)], 10.1103/PhysRevA.55.1522 hypothesized that the local box-counting dimension of a discrete quantum spectrum should depend exclusively on the nearest-neighbor spacing distribution (NNSD) of the spectrum. In this Rapid Communication, we validate their hypothesis by deriving an explicit formula for the local box-counting dimension of a countably-infinite discrete quantum spectrum. This formula expresses the local box-counting dimension of a spectrum in terms of single and double integrals of the NNSD of the spectrum. As applications, we derive an analytical formula for Poisson spectra and closed-form approximations to the local box-counting dimension for spectra having Gaussian orthogonal ensemble (GOE), Gaussian unitary ensemble (GUE), and Gaussian symplectic ensemble (GSE) spacing statistics. In the Poisson and GOE cases, we compare our theoretical formulas with the published numerical data of Wang and Ong and observe excellent agreement between their data and our theory. We also study numerically the local box-counting dimensions of the Riemann zeta function zeros and the alternate levels of GOE spectra, which are often used as numerical models of spectra possessing GUE and GSE spacing statistics, respectively. In each case, the corresponding theoretical formula is found to accurately describe the numerically computed local box-counting dimension.

Effects of lurasidone on ketamine-induced joint visual attention dysfunction as a possible disease model of autism spectrum disorders in common marmosets.

PubMed

Nakako, Tomokazu; Murai, Takeshi; Ikejiri, Masaru; Hashimoto, Takashi; Kotani, Manato; Matsumoto, Kenji; Manabe, Shoji; Ogi, Yuji; Konoike, Naho; Nakamura, Katsuki; Ikeda, Kazuhito

2014-11-01

Infants with autism have difficulties performing joint visual attention (JVA), defined as following another person's pointing gesture and gaze. Some non-human primates (NHPs) can also perform JVA. Most preclinical research on autism spectrum disorders (ASD) has used rodents as animal models of this social interaction disorder. However, models using rodents fail to capture the complexity of social interactions that are disrupted in ASD. Therefore, JVA impairment in NHPs might be a more useful model of ASD. The aim of this study was to develop an appropriate and convenient ASD model with common marmosets. We first tested whether marmosets were capable of performing JVA. Subsequently, we administered ketamine, an N-methyl-d-aspartate (NMDA) receptor antagonist, to induce JVA impairment and investigated the effects of lurasidone, a newer antipsychotic agent, on the JVA impairments. An apparatus was constructed using 4 white boxes, which were attached to the corners of a frame. All boxes had a hinged door, and marmosets could easily obtain a reward by pushing the door. An experimenter pointed and gazed at the boxes to inform the marmosets which box contained the reward. Their behavior was scored according to the number of incorrect choices. The JVA score was significantly higher in the cued vs. uncued tasks. Ketamine significantly decreased the JVA score, but lurasidone significantly reversed this effect. These findings suggest that this experimental system could be a useful animal model of neuropsychiatric disorders characterized by NMDA-receptor signaling, including ASD, and that lurasidone might be effective for some aspects of ASD. Copyright © 2014 Elsevier B.V. All rights reserved.

Axisymmetric Shearing Box Models of Magnetized Disks

NASA Astrophysics Data System (ADS)

Guan, Xiaoyue; Gammie, Charles F.

2008-01-01

The local model, or shearing box, has proven a useful model for studying the dynamics of astrophysical disks. Here we consider the evolution of magnetohydrodynamic (MHD) turbulence in an axisymmetric local model in order to evaluate the limitations of global axisymmetric models. An exploration of the model parameter space shows the following: (1) The magnetic energy and α-decay approximately exponentially after an initial burst of turbulence. For our code, HAM, the decay time τ propto Res , where Res/2 is the number of zones per scale height. (2) In the initial burst of turbulence the magnetic energy is amplified by a factor proportional to Res3/4λR, where λR is the radial scale of the initial field. This scaling applies only if the most unstable wavelength of the magnetorotational instability is resolved and the final field is subthermal. (3) The shearing box is a resonant cavity and in linear theory exhibits a discrete set of compressive modes. These modes are excited by the MHD turbulence and are visible as quasi-periodic oscillations (QPOs) in temporal power spectra of fluid variables at low spatial resolution. At high resolution the QPOs are hidden by a noise continuum. (4) In axisymmetry disk turbulence is local. The correlation function of the turbulence is limited in radial extent, and the peak magnetic energy density is independent of the radial extent of the box LR for LR > 2H. (5) Similar results are obtained for the HAM, ZEUS, and ATHENA codes; ATHENA has an effective resolution that is nearly double that of HAM and ZEUS. (6) Similar results are obtained for 2D and 3D runs at similar resolution, but only for particular choices of the initial field strength and radial scale of the initial magnetic field.

A class of Box-Cox transformation models for recurrent event data.

PubMed

Sun, Liuquan; Tong, Xingwei; Zhou, Xian

2011-04-01

In this article, we propose a class of Box-Cox transformation models for recurrent event data, which includes the proportional means models as special cases. The new model offers great flexibility in formulating the effects of covariates on the mean functions of counting processes while leaving the stochastic structure completely unspecified. For the inference on the proposed models, we apply a profile pseudo-partial likelihood method to estimate the model parameters via estimating equation approaches and establish large sample properties of the estimators and examine its performance in moderate-sized samples through simulation studies. In addition, some graphical and numerical procedures are presented for model checking. An example of application on a set of multiple-infection data taken from a clinic study on chronic granulomatous disease (CGD) is also illustrated.

11. RW Meyer Sugar Mill: 18761889. Locomotive=type, firetube, portable boiler, ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

11. RW Meyer Sugar Mill: 1876-1889. Locomotive=type, fire-tube, portable boiler, model No. 1, Manufactured by Ames Iron Works, Oswego, New York, 1879. 120 lbs./sq. in. working pressure, 66 sq. ft. heating surface in tubes. View: the boiler provided steam for steam engine which in turn powered the centrifugals. View shows front fire box, end of boiler. Below fire-box,used for removing ashes, is a door. Circular openings at the rear of the fire-box are where fire-tubes connected with furnace. Column to right of fire-box carried pressure and water level gauges. Fluted chimney-type structure is steam-port, safety valve, and whistle. Weights originally sat on the arm extending from the top of the port and controlled the boiler pressure. - R. W. Meyer Sugar Mill, State Route 47, Kualapuu, Maui County, HI

Saturation of the magnetorotational instability in the unstratified shearing box with zero net flux: convergence in taller boxes

NASA Astrophysics Data System (ADS)

Shi, Ji-Ming; Stone, James M.; Huang, Chelsea X.

2016-03-01

Previous studies of the non-linear regime of the magnetorotational instability in one particular type of shearing box model - unstratified with no net magnetic flux - find that without explicit dissipation (viscosity and resistivity) the saturation amplitude decreases with increasing numerical resolution. We show that this result is strongly dependent on the vertical aspect ratio of the computational domain Lz/Lx. When Lz/Lx ≲ 1, we recover previous results. However, when the vertical domain is extended Lz/Lx ≳ 2.5, we find the saturation level of the stress is greatly increased (giving a ratio of stress to pressure α ≳ 0.1), and moreover the results are independent of numerical resolution. Consistent with previous results, we find that saturation of the magnetorotational (MRI) in this regime is controlled by a cyclic dynamo which generates patches of strong toroidal field that switches sign on scales of Lx in the vertical direction. We speculate that when Lz/Lx ≲ 1, the dynamo is inhibited by the small size of the vertical domain, leading to the puzzling dependence of saturation amplitude on resolution. We show that previous toy models developed to explain the MRI dynamo are consistent with our results, and that the cyclic pattern of toroidal fields observed in stratified shearing box simulations (leading to the so-called butterfly diagram) may also be related. In tall boxes the saturation amplitude is insensitive to whether or not explicit dissipation is included in the calculations, at least for large magnetic Reynolds and Prandtl number. Finally, we show MRI turbulence in tall domains has a smaller critical Pmc, and an extended lifetime compared to Lz/Lx ≲ 1 boxes.

Deconvolution single shot multibox detector for supermarket commodity detection and classification

NASA Astrophysics Data System (ADS)

Li, Dejian; Li, Jian; Nie, Binling; Sun, Shouqian

2017-07-01

This paper proposes an image detection model to detect and classify supermarkets shelves' commodity. Based on the principle of the features directly affects the accuracy of the final classification, feature maps are performed to combine high level features with bottom level features. Then set some fixed anchors on those feature maps, finally the label and the position of commodity is generated by doing a box regression and classification. In this work, we proposed a model named Deconvolutiuon Single Shot MultiBox Detector, we evaluated the model using 300 images photographed from real supermarket shelves. Followed the same protocol in other recent methods, the results showed that our model outperformed other baseline methods.

Power module control moment gyro

NASA Technical Reports Server (NTRS)

1979-01-01

The directed design modifications to the Skylab/ATM CMG for application to the Power Module include new rotors of a different material with high resistance to stress corrosion cracking. The spin bearing retainer fix which was determined during the post Skylab mission was incorporated, and the speed pickoff was improved through the use of pickoff thermal cycling screening tests. The unlimited gimbal freedom on box axes was incorporated using slip ring assemblies. The on-orbit replacement capability was also incorporated for the CMG assembly and the inverter assembly.

Prediction of PM 10 concentrations at urban traffic intersections using semi-empirical box modelling with instantaneous velocity and acceleration

NASA Astrophysics Data System (ADS)

He, Hong-di; Lu, Wei-Zhen; Xue, Yu

2009-12-01

At urban traffic intersections, vehicles frequently stop with idling engines during the red-light period and speed up rapidly during the green-light period. The changes of driving patterns (i.e., idle, acceleration, deceleration and cruising patterns) generally produce uncertain emission. Additionally, the movement of pedestrians and the influence of wind further result in the random dispersion of pollutants. It is, therefore, too complex to simulate the effects of such dynamics on the resulting emission using conventional deterministic causal models. For this reason, a modified semi-empirical box model for predicting the PM 10 concentrations on roadsides is proposed in this paper. The model constitutes three parts, i.e., traffic, emission and dispersion components. The traffic component is developed using a generalized force traffic model to obtain the instantaneous velocity and acceleration when vehicles move through intersections. Hence the distribution of vehicle emission in street canyon during the green-light period is calculated. Then the dispersion component is investigated using a semi-empirical box model combining average wind speed, box height and background concentrations. With these considerations, the proposed model is applied and evaluated using measured data at a busy traffic intersection in Mong Kok, Hong Kong. In order to test the performance of the model, two situations, i.e., the data sets within a sunny day and between two sunny days, were selected to examine the model performance. The predicted values are generally well coincident with the observed data during different time slots except several values are overestimated or underestimated. Moreover, two types of vehicles, i.e., buses and petrol cars, are separately taken into account in the study. Buses are verified to contribute most to the emission in street canyons, which may be useful in evaluating the impact of vehicle emissions on the ambient air quality when there is a significant change in a specific vehicular population.

On-line algorithms for forecasting hourly loads of an electric utility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vemuri, S.; Huang, W.L.; Nelson, D.J.

A method that lends itself to on-line forecasting of hourly electric loads is presented, and the results of its use are compared to models developed using the Box-Jenkins method. The method consits of processing the historical hourly loads with a sequential least-squares estimator to identify a finite-order autoregressive model which, in turn, is used to obtain a parsimonious autoregressive-moving average model. The method presented has several advantages in comparison with the Box-Jenkins method including much-less human intervention, improved model identification, and better results. The method is also more robust in that greater confidence can be placed in the accuracy ofmore » models based upon the various measures available at the identification stage.« less

Box-wing model approach for solar radiation pressure modelling in a multi-GNSS scenario

NASA Astrophysics Data System (ADS)

Tobias, Guillermo; Jesús García, Adrián

2016-04-01

The solar radiation pressure force is the largest orbital perturbation after the gravitational effects and the major error source affecting GNSS satellites. A wide range of approaches have been developed over the years for the modelling of this non gravitational effect as part of the orbit determination process. These approaches are commonly divided into empirical, semi-analytical and analytical, where their main difference relies on the amount of knowledge of a-priori physical information about the properties of the satellites (materials and geometry) and their attitude. It has been shown in the past that the pre-launch analytical models fail to achieve the desired accuracy mainly due to difficulties in the extrapolation of the in-orbit optical and thermic properties, the perturbations in the nominal attitude law and the aging of the satellite's surfaces, whereas empirical models' accuracies strongly depend on the amount of tracking data used for deriving the models, and whose performances are reduced as the area to mass ratio of the GNSS satellites increases, as it happens for the upcoming constellations such as BeiDou and Galileo. This paper proposes to use basic box-wing model for Galileo complemented with empirical parameters, based on the limited available information about the Galileo satellite's geometry. The satellite is modelled as a box, representing the satellite bus, and a wing representing the solar panel. The performance of the model will be assessed for GPS, GLONASS and Galileo constellations. The results of the proposed approach have been analyzed over a one year period. In order to assess the results two different SRP models have been used. Firstly, the proposed box-wing model and secondly, the new CODE empirical model, ECOM2. The orbit performances of both models are assessed using Satellite Laser Ranging (SLR) measurements, together with the evaluation of the orbit prediction accuracy. This comparison shows the advantages and disadvantages of taking the physical interactions between satellite and solar radiation into account in an empirical model with respect to a pure empirical model.

The Box and the Circle--Two Systems of Life: A Model for Understanding Native-Non-Native Issues.

ERIC Educational Resources Information Center

Derrick, Jann

Working as a family systems therapist with Native and non-Native families, the author observed two opposing social systems. Non-native families systems typify "The Box System," whereas native family systems portray "The Circle System." A few characteristics of the Circle System are: (1) a focus on life and peacefulness; (2) females and children…

Linguistic Mediation of Children's Performance in a New Symbolic Understanding Task

ERIC Educational Resources Information Center

Homer, Bruce D.; Petroff, Natalya; Hayward, Elizabeth O.

2013-01-01

The effects of language on symbolic functioning were examined using the "boxes task," a new symbolic understanding task based on DeLoache's model task. Children ("N" = 32; ages 2;4--3;8) observed an object being hidden in a stack of four boxes and were then asked to retrieve a similar object in the same location from a set of…

Box compression analysis of world-wide data spanning 46 years

Treesearch

Thomas J. Urbanik; Benjamin Frank

2006-01-01

The state of the art among most industry citations of box compression estimation is the equation by McKee developed in 1963. Because of limitations in computing tools at the time the McKee equation was developed, the equation is a simplification, with many constraints, of a more general relationship. By applying the results of sophisticated finite element modeling, in...

An alternative screening model for the estimation of outdoor air concentration at large contaminated sites

NASA Astrophysics Data System (ADS)

Verginelli, Iason; Nocentini, Massimo; Baciocchi, Renato

2017-09-01

Simplified analytical solutions of fate and transport models are often used to carry out risk assessment on contaminated sites, to evaluate the long-term air quality in relation to volatile organic compounds in either soil or groundwater. Among the different assumptions employed to develop these solutions, in this work we focus on those used in the ASTM-RBCA ;box model; for the evaluation of contaminant dispersion in the atmosphere. In this simple model, it is assumed that the contaminant volatilized from the subsurface is dispersed in the atmosphere within a mixing height equal to two meters, i.e. the height of the breathing zone. In certain cases, this simplification could lead to an overestimation of the outdoor air concentration at the point of exposure. In this paper we first discuss the maximum source lengths (in the wind direction) for which the application of the ;box model; can be considered acceptable. Specifically, by comparing the results of ;box model; with the SCREEN3 model of U.S.EPA we found that under very stable atmospheric conditions (class F) the ASTM-RBCA approach provides acceptable results for source lengths up to 200 m while for very unstable atmospheric conditions (class A and B) the overestimation of the concentrations at the point of the exposure can be already observed for source lengths of only 10 m. In the latter case, the overestimation of the ;box model; can be of more than one order of magnitude for source lengths above 500 m. To overcome this limitation, in this paper we introduce a simple analytical solution that can be used for the calculation of the concentration at the point of exposure for large contaminated sites. The method consists in the introduction of an equivalent mixing zone height that allows to account for the dispersion of the contaminants along the source length while keeping the simplistic ;box model; approach that is implemented in most of risk assessment tools that are based on the ASTM-RBCA standard (e.g. RBCA toolkit). Based on our testing, we found that the developed model replicates very well the results of the more sophisticated dispersion SCREEN3 model with deviations always below 10%. The key advantage of this approach is that it can be very easily incorporated in the current risk assessment screening tools that are based on the ASTM standards while ensuring a more accurate evaluation of the concentration at the point of exposure.

WHITE BOX: LOW COST BOX FOR LAPAROSCOPIC TRAINING

PubMed Central

MARTINS, João Maximiliano Pedron; RIBEIRO, Roberto Vanin Pinto; CAVAZZOLA, Leandro Totti

2015-01-01

Background: Laparoscopic surgery is a reality in almost all surgical centers. Although with initial greater technical difficulty for surgeons, the rapid return to activities, less postoperative pain and higher quality aesthetic stimulates surgeons to evolve technically in this area. However, unlike open surgery where learning opportunities are more accessible, the laparoscopic training represents a challenge in surgeon formation. Aim: To present a low cost model for laparoscopic training box. Methods: This model is based in easily accessible materials; the equipment can be easily found based on chrome mini jet and passes rubber thread and a webcam attached to an aluminum handle. Results: It can be finalized in two days costing R$ 280,00 (US$ 90). Conclusion: It is possible to stimulate a larger number of surgeons to have self training in laparoscopy at low cost seeking to improve their surgical skills outside the operating room. PMID:26537148

Structural dynamic and thermal stress analysis of nuclear reactor vessel support system

NASA Technical Reports Server (NTRS)

Chi-Diango, J.

1972-01-01

A nuclear reactor vessel is supported by a Z-ring and a box ring girder. The two proposed structural configurations to transmit the loads from the Z-ring and the box ring girder to the foundation are shown. The cantilever concrete ledge transmitting the load from the Z-ring and the box girder via the cavity wall to the foundation is shown, along with the loads being transmitted through one of the six steel columns. Both of these two supporting systems were analyzed by using rigid format 9 of NASTRAN for dynamic loads, and the thermal stresses were analyzed by AXISOL. The six column configuration was modeled by a combination of plate and bar elements, and the concrete cantilever ledge configuration was modeled by plate elements. Both configurations were found structurally satisfactory; however, nonstructural considerations favored the concrete cantilever ledge.

Second NASA Technical Interchange Meeting (TIM): Advanced Technology Lifecycle Analysis System (ATLAS) Technology Tool Box (TTB)

NASA Technical Reports Server (NTRS)

ONeil, D. A.; Mankins, J. C.; Christensen, C. B.; Gresham, E. C.

2005-01-01

The Advanced Technology Lifecycle Analysis System (ATLAS), a spreadsheet analysis tool suite, applies parametric equations for sizing and lifecycle cost estimation. Performance, operation, and programmatic data used by the equations come from a Technology Tool Box (TTB) database. In this second TTB Technical Interchange Meeting (TIM), technologists, system model developers, and architecture analysts discussed methods for modeling technology decisions in spreadsheet models, identified specific technology parameters, and defined detailed development requirements. This Conference Publication captures the consensus of the discussions and provides narrative explanations of the tool suite, the database, and applications of ATLAS within NASA s changing environment.

New constraints on neutron star models of gamma-ray bursts. II - X-ray observations of three gamma-ray burst error boxes

NASA Technical Reports Server (NTRS)

Boer, M.; Hurley, K.; Pizzichini, G.; Gottardi, M.

1991-01-01

Exosat observations are presented for 3 gamma-ray-burst error boxes, one of which may be associated with an optical flash. No point sources were detected at the 3-sigma level. A comparison with Einstein data (Pizzichini et al., 1986) is made for the March 5b, 1979 source. The data are interpreted in the framework of neutron star models and derive upper limits for the neutron star surface temperatures, accretion rates, and surface densities of an accretion disk. Apart from the March 5b, 1979 source, consistency is found with each model.

Modeling radiation forces acting on TOPEX/Poseidon for precision orbit determination

NASA Technical Reports Server (NTRS)

Marshall, J. A.; Luthcke, S. B.; Antreasian, P. G.; Rosborough, G. W.

1992-01-01

Geodetic satellites such as GEOSAT, SPOT, ERS-1, and TOPEX/Poseidon require accurate orbital computations to support the scientific data they collect. Until recently, gravity field mismodeling was the major source of error in precise orbit definition. However, albedo and infrared re-radiation, and spacecraft thermal imbalances produce in combination no more than a 6-cm radial root-mean-square (RMS) error over a 10-day period. This requires the development of nonconservative force models that take the satellite's complex geometry, attitude, and surface properties into account. For TOPEX/Poseidon, a 'box-wing' satellite form was investigated that models the satellite as a combination of flat plates arranged in a box shape with a connected solar array. The nonconservative forces acting on each of the eight surfaces are computed independently, yielding vector accelerations which are summed to compute the total aggregate effect on the satellite center-of-mass. In order to test the validity of this concept, 'micro-models' based on finite element analysis of TOPEX/Poseidon were used to generate acceleration histories in a wide variety of orbit orientations. These profiles are then compared to the box-wing model. The results of these simulations and their implication on the ability to precisely model the TOPEX/Poseidon orbit are discussed.

Understanding Decreases in Land Relative Humidity with Global Warming: Conceptual Model and GCM Simulations

NASA Astrophysics Data System (ADS)

Byrne, Michael P.; O'Gorman, Paul A.

2016-12-01

Climate models simulate a strong land-ocean contrast in the response of near-surface relative humidity to global warming: relative humidity tends to increase slightly over oceans but decrease substantially over land. Surface energy balance arguments have been used to understand the response over ocean but are difficult to apply over more complex land surfaces. Here, a conceptual box model is introduced, involving moisture transport between the land and ocean boundary layers and evapotranspiration, to investigate the decreases in land relative humidity as the climate warms. The box model is applied to idealized and full-complexity (CMIP5) general circulation model simulations, and it is found to capture many of the features of the simulated changes in land relative humidity. The box model suggests there is a strong link between fractional changes in specific humidity over land and ocean, and the greater warming over land than ocean then implies a decrease in land relative humidity. Evapotranspiration is of secondary importance for the increase in specific humidity over land, but it matters more for the decrease in relative humidity. Further analysis shows there is a strong feedback between changes in surface-air temperature and relative humidity, and this can amplify the influence on relative humidity of factors such as stomatal conductance and soil moisture.

A Framework for Evaluating R&D Impacts and Supply Chain Dynamics Early in a Product Life Cycle. Looking inside the black box of innovation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jordan, Gretchen; Mote, Jonathan; Ruegg, Rosalie

This report provides a framework for evaluation of R&D investments aimed at speeding up the pace of innovation and strengthening domestic manufacturing and supply chains, which make up a portion of the investments of the U.S. Department of Energy's (DOEs) Office of Energy Efficiency and Renewable Energy (EERE). These investments focus on early phases of the product life cycle, characterized as extending from pre-product, late stage R&D, to initial product introduction and through to early market growth. The investments aim to provide support for additional technology, supply-chain, manufacturing, and early market development to enhance or create markets for clean energymore » technologies and strengthen the U.S. industry base.« less

Photoperiod regulates multiple gene expression in the suprachiasmatic nuclei and pars tuberalis of the Siberian hamster (Phodopus sungorus).

PubMed

Johnston, Jonathan D; Ebling, Francis J P; Hazlerigg, David G

2005-06-01

Photoperiod regulates the seasonal physiology of many mammals living in temperate latitudes. Photoperiodic information is decoded by the master circadian clock in the suprachiasmatic nuclei (SCN) of the hypothalamus and then transduced via pineal melatonin secretion. This neurochemical signal is interpreted by tissues expressing melatonin receptors (e.g. the pituitary pars tuberalis, PT) to drive physiological changes. In this study we analysed the photoperiodic regulation of the circadian clockwork in the SCN and PT of the Siberian hamster. Female hamsters were exposed to either long or short photoperiod for 8 weeks and sampled at 2-h intervals across the 24-h cycle. In the SCN, rhythmic expression of the clock genes Per1, Per2, Cry1, Rev-erbalpha, and the clock-controlled genes arginine vasopressin (AVP) and d-element binding protein (DBP) was modulated by photoperiod. All of these E-box-containing genes tracked dawn, with earlier peak mRNA expression in long, compared to short, photoperiod. This response occurred irrespective of the presence of additional regulatory cis-elements, suggesting photoperiodic regulation of SCN gene expression through a common E-box-related mechanism. In long photoperiod, expression of Cry1 and Per1 in the PT tracked the onset and offset of melatonin secretion, respectively. However, whereas Cry1 tracked melatonin onset in short period, Per1 expression was not detectably rhythmic. We therefore propose that, in the SCN, photoperiodic regulation of clock gene expression primarily occurs via E-boxes, whereas melatonin-driven signal transduction drives the phasing of a subset of clock genes in the PT, independently of the E-box.

Plasticity in Structural and Functional Interactions between the Phosphoprotein and Nucleoprotein of Measles Virus*

PubMed Central

Shu, Yaoling; Habchi, Johnny; Costanzo, Stéphanie; Padilla, André; Brunel, Joanna; Gerlier, Denis; Oglesbee, Michael; Longhi, Sonia

2012-01-01

The measles virus (MeV) phosphoprotein (P) tethers the polymerase to the nucleocapsid template for transcription and genome replication. Binding of P to nucleocapsid is mediated by the X domain of P (XD) and a conserved sequence (Box-2) within the C-terminal domain of the nucleoprotein (NTAIL). XD binding induces NTAIL α-helical folding, which in turn has been proposed to stabilize the polymerase-nucleocapsid complex, with cycles of binding and release required for transcription and genome replication. The current work directly assessed the relationships among XD-induced NTAIL folding, XD-NTAIL binding affinity, and polymerase activity. Amino acid substitutions that abolished XD-induced NTAIL α-helical folding were created within Box-2 of Edmonston MeV NTAIL. Polymerase activity in minireplicons was maintained despite a 35-fold decrease in XD-NTAIL binding affinity or reduction/loss of XD-induced NTAIL alpha-helical folding. Recombinant infectious virus was recovered for all mutants, and transcriptase elongation rates remained within a 1.7-fold range of parent virus. Box-2 mutations did however impose a significant cost to infectivity, reflected in an increase in the amount of input genome required to match the infectivity of parent virus. Diminished infectivity could not be attributed to changes in virion protein composition or production of defective interfering particles, where changes from parent virus were within a 3-fold range. The results indicated that MeV polymerase activity, but not infectivity, tolerates amino acid changes in the XD-binding region of the nucleoprotein. Selectional pressure for conservation of the Box-2 sequence may thus reflect a role in assuring the fidelity of polymerase functions or the assembly of viral particles required for optimal infectivity. PMID:22318731

Plasticity in structural and functional interactions between the phosphoprotein and nucleoprotein of measles virus.

PubMed

Shu, Yaoling; Habchi, Johnny; Costanzo, Stéphanie; Padilla, André; Brunel, Joanna; Gerlier, Denis; Oglesbee, Michael; Longhi, Sonia

2012-04-06

The measles virus (MeV) phosphoprotein (P) tethers the polymerase to the nucleocapsid template for transcription and genome replication. Binding of P to nucleocapsid is mediated by the X domain of P (XD) and a conserved sequence (Box-2) within the C-terminal domain of the nucleoprotein (N(TAIL)). XD binding induces N(TAIL) α-helical folding, which in turn has been proposed to stabilize the polymerase-nucleocapsid complex, with cycles of binding and release required for transcription and genome replication. The current work directly assessed the relationships among XD-induced N(TAIL) folding, XD-N(TAIL) binding affinity, and polymerase activity. Amino acid substitutions that abolished XD-induced N(TAIL) α-helical folding were created within Box-2 of Edmonston MeV N(TAIL). Polymerase activity in minireplicons was maintained despite a 35-fold decrease in XD-N(TAIL) binding affinity or reduction/loss of XD-induced N(TAIL) alpha-helical folding. Recombinant infectious virus was recovered for all mutants, and transcriptase elongation rates remained within a 1.7-fold range of parent virus. Box-2 mutations did however impose a significant cost to infectivity, reflected in an increase in the amount of input genome required to match the infectivity of parent virus. Diminished infectivity could not be attributed to changes in virion protein composition or production of defective interfering particles, where changes from parent virus were within a 3-fold range. The results indicated that MeV polymerase activity, but not infectivity, tolerates amino acid changes in the XD-binding region of the nucleoprotein. Selectional pressure for conservation of the Box-2 sequence may thus reflect a role in assuring the fidelity of polymerase functions or the assembly of viral particles required for optimal infectivity.

Filtration stability of living brush mattresses at navigable waterways

NASA Astrophysics Data System (ADS)

Sokopp, Manuel

2017-04-01

According to the guidelines of the Federal Waterways Engineering and Research Institute in Germany, waterway construction buildings, which include soil bioengineering structures, must be stable against soil displacements. Therefore, willow brush mattresses were tested for their filtration stability in a specially developed process which is based on the testing of geotextiles and armourstones used for navigable waterway constructions. In March 2016 willow brush mattresses made of white (Salix alba L.) or basket willows (Salix viminalis L.) were planted in 16 sample boxes, each with a cross-section area of 30x30 cm. For the tests on filtration stability, the upper 20 cm of the box were separated and placed upside down into a device in which the sample box could be flowed through from below. When a water column of 50 cm above the sample was reached, the water outlet was opened so the water flowed through the sample in the opposite direction, thus simulating drawdown. By the measurements of the pressure sensors above and below the sample, the coefficient of permeability k of the rooted soil during drawdown could be calculated. After this hydropeaking cycle, the soil material that was rinsed out through the willow branches was collected, weighed after drying until weight constancy, and compared with the dry mass of the retained soil material to calculate the share of the total mass. These filtration stability tests were carried out directly after planting the sample boxes, as well as one, three and six months afterwards, each test series with four reruns per willow species. Over time, the increasing root penetration resulted in a significant reduction in the permeability and in more retained soil material.

Breaking beta: deconstructing the parasite transmission function

PubMed Central

McCallum, Hamish; Fenton, Andy; Hudson, Peter J.; Lee, Brian; Levick, Beth; Norman, Rachel

2017-01-01

Transmission is a fundamental step in the life cycle of every parasite but it is also one of the most challenging processes to model and quantify. In most host–parasite models, the transmission process is encapsulated by a single parameter β. Many different biological processes and interactions, acting on both hosts and infectious organisms, are subsumed in this single term. There are, however, at least two undesirable consequences of this high level of abstraction. First, nonlinearities and heterogeneities that can be critical to the dynamic behaviour of infections are poorly represented; second, estimating the transmission coefficient β from field data is often very difficult. In this paper, we present a conceptual model, which breaks the transmission process into its component parts. This deconstruction enables us to identify circumstances that generate nonlinearities in transmission, with potential implications for emergent transmission behaviour at individual and population scales. Such behaviour cannot be explained by the traditional linear transmission frameworks. The deconstruction also provides a clearer link to the empirical estimation of key components of transmission and enables the construction of flexible models that produce a unified understanding of the spread of both micro- and macro-parasite infectious disease agents. This article is part of the themed issue ‘Opening the black box: re-examining the ecology and evolution of parasite transmission’. PMID:28289252

Synthesis and stereospecificity of 4,5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA.

PubMed

Orac, Crina M; Zhou, Shu; Means, John A; Boehm, David; Bergmeier, Stephen C; Hines, Jennifer V

2011-10-13

The enantiomers and the cis isomers of two previously studied 4,5-disubstituted oxazolidinones have been synthesized, and their binding to the T-box riboswitch antiterminator model RNA has been investigated in detail. Characterization of ligand affinities and binding site localization indicates that there is little stereospecific discrimination for binding antiterminator RNA alone. This binding similarity between enantiomers is likely due to surface binding, which accommodates ligand conformations that result in comparable ligand-antiterminator contacts. These results have significant implications for T-box antiterminator-targeted drug discovery and, in general, for targeting other medicinally relevant RNA that do not present deep binding pockets.

Synthesis and stereospecificity of 4,5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA

PubMed Central

Orac, Crina M.; Zhou, Shu; Means, John A.; Boehm, David; Bergmeier, Stephen C.; Hines, Jennifer V.

2012-01-01

The enantiomers and the cis isomers of two previously studied 4,5-disubstituted oxazolidinones have been synthesized and their binding to the T-box riboswitch antiterminator model RNA investigated in detail. Characterization of ligand affinities and binding site localization indicate that there is little stereospecific discrimination for binding antiterminator RNA alone. This binding similarity between enantiomers is likely due to surface binding, which accommodates ligand conformations that result in comparable ligand-antiterminator contacts. These results have significant implications for T-box antiterminator-targeted drug discovery and, in general, for targeting other medicinally relevant RNA that do not present deep binding pockets. PMID:21812425

Functional form and risk adjustment of hospital costs: Bayesian analysis of a Box-Cox random coefficients model.

PubMed

Hollenbeak, Christopher S

2005-10-15

While risk-adjusted outcomes are often used to compare the performance of hospitals and physicians, the most appropriate functional form for the risk adjustment process is not always obvious for continuous outcomes such as costs. Semi-log models are used most often to correct skewness in cost data, but there has been limited research to determine whether the log transformation is sufficient or whether another transformation is more appropriate. This study explores the most appropriate functional form for risk-adjusting the cost of coronary artery bypass graft (CABG) surgery. Data included patients undergoing CABG surgery at four hospitals in the midwest and were fit to a Box-Cox model with random coefficients (BCRC) using Markov chain Monte Carlo methods. Marginal likelihoods and Bayes factors were computed to perform model comparison of alternative model specifications. Rankings of hospital performance were created from the simulation output and the rankings produced by Bayesian estimates were compared to rankings produced by standard models fit using classical methods. Results suggest that, for these data, the most appropriate functional form is not logarithmic, but corresponds to a Box-Cox transformation of -1. Furthermore, Bayes factors overwhelmingly rejected the natural log transformation. However, the hospital ranking induced by the BCRC model was not different from the ranking produced by maximum likelihood estimates of either the linear or semi-log model. Copyright (c) 2005 John Wiley & Sons, Ltd.

An artificial intelligence tool for complex age-depth models

NASA Astrophysics Data System (ADS)

Bradley, E.; Anderson, K. A.; de Vesine, L. R.; Lai, V.; Thomas, M.; Nelson, T. H.; Weiss, I.; White, J. W. C.

2017-12-01

CSciBox is an integrated software system for age modeling of paleoenvironmental records. It incorporates an array of data-processing and visualization facilities, ranging from 14C calibrations to sophisticated interpolation tools. Using CSciBox's GUI, a scientist can build custom analysis pipelines by composing these built-in components or adding new ones. Alternatively, she can employ CSciBox's automated reasoning engine, Hobbes, which uses AI techniques to perform an in-depth, autonomous exploration of the space of possible age-depth models and presents the results—both the models and the reasoning that was used in constructing and evaluating them—to the user for her inspection. Hobbes accomplishes this using a rulebase that captures the knowledge of expert geoscientists, which was collected over the course of more than 100 hours of interviews. It works by using these rules to generate arguments for and against different age-depth model choices for a given core. Given a marine-sediment record containing uncalibrated 14C dates, for instance, Hobbes tries CALIB-style calibrations using a choice of IntCal curves, with reservoir age correction values chosen from the 14CHRONO database using the lat/long information provided with the core, and finally composes the resulting age points into a full age model using different interpolation methods. It evaluates each model—e.g., looking for outliers or reversals—and uses that information to guide the next steps of its exploration, and presents the results to the user in human-readable form. The most powerful of CSciBox's built-in interpolation methods is BACON, a Bayesian sedimentation-rate algorithm—a powerful but complex tool that can be difficult to use. Hobbes adjusts BACON's many parameters autonomously to match the age model to the expectations of expert geoscientists, as captured in its rulebase. It then checks the model against the data and iteratively re-calculates until it is a good fit to the data.

Deflection monitoring for a box girder based on a modified conjugate beam method

NASA Astrophysics Data System (ADS)

Chen, Shi-Zhi; Wu, Gang; Xing, Tuo

2017-08-01

After several years of operation, a box girder bridge would commonly experience excessive deflection, which endangers the bridge’s life span as well as the safety of vehicles travelling on it. In order to avoid potential risks, it is essential to constantly monitor the defection of box girders. However, currently, the direct deflection monitoring methods are limited by the complicated environments beneath the bridges, such as rivers or other traffic lanes, which severely impede the layouts of the sensors. The other indirect deflection monitoring methods mostly do not thoroughly consider the inherent shear lag effect and shear deformation in the box girder, resulting in a rather large error. Under these circumstances, a deflection monitoring method suiting box girders is proposed in this article, based on the conjugate beam method and distributed long-gauge fibre Bragg grating (FBG) sensor. A lab experiment was conducted to verify the reliability and feasibility of this method under practical application. Further, the serviceability under different span-depth ratios and web thicknesses was examined through a finite element model.

Carbon Molecular Sieve Membrane as a True One Box Unit for Large Scale Hydrogen Production

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Paul

2012-05-01

IGCC coal-fired power plants show promise for environmentally-benign power generation. In these plants coal is gasified to syngas then processed in a water gas-shift (WGS) reactor to maximize the hydrogen/CO{sub 2} content. The gas stream can then be separated into a hydrogen rich stream for power generation and/or further purified for sale as a chemical and a CO{sub 2} rich stream for the purpose of carbon capture and storage (CCS). Today, the separation is accomplished using conventional absorption/desorption processes with post CO{sub 2} compression. However, significant process complexity and energy penalties accrue with this approach, accounting for ~20% of themore » capital cost and ~27% parasitic energy consumption. Ideally, a one-box process is preferred in which the syngas is fed directly to the WGS reactor without gas pre-treatment, converting the CO to hydrogen in the presence of H{sub 2}S and other impurities and delivering a clean hydrogen product for power generation or other uses. The development of such a process is the primary goal of this project. Our proposed "one-box" process includes a catalytic membrane reactor (MR) that makes use of a hydrogen-selective, carbon molecular sieve (CMS) membrane, and a sulfur-tolerant Co/Mo/Al{sub 2}O{sub 3} catalyst. The membrane reactor's behavior has been investigated with a bench top unit for different experimental conditions and compared with the modeling results. The model is used to further investigate the design features of the proposed process. CO conversion >99% and hydrogen recovery >90% are feasible under the operating pressures available from IGCC. More importantly, the CMS membrane has demonstrated excellent selectivity for hydrogen over H{sub 2}S (>100), and shown no flux loss in the presence of a synthetic "tar"-like material, i.e., naphthalene. In summary, the proposed "one-box" process has been successfully demonstrated with the bench-top reactor. In parallel we have successfully designed and fabricated a full-scale CMS membrane and module for the proposed application. This full-scale membrane element is a 3" diameter with 30"L, composed of ~85 single CMS membrane tubes. The membrane tubes and bundles have demonstrated satisfactory thermal, hydrothermal, thermal cycling and chemical stabilities under an environment simulating the temperature, pressure and contaminant levels encountered in our proposed process. More importantly, the membrane module packed with the CMS bundle was tested for over 30 pressure cycles between ambient pressure and >300 -600 psi at 200 to 300°C without mechanical degradation. Finally, internal baffles have been designed and installed to improve flow distribution within the module, which delivered 90% separation efficiency in comparison with the efficiency achieved with single membrane tubes. In summary, the full-scale CMS membrane element and module have been successfully developed and tested satisfactorily for our proposed one-box application; a test quantity of elements/modules have been fabricated for field testing. Multiple field tests have been performed under this project at National Carbon Capture Center (NCCC). The separation efficiency and performance stability of our full-scale membrane elements have been verified in testing conducted for times ranging from 100 to >250 hours of continuous exposure to coal/biomass gasifier off-gas for hydrogen enrichment with no gas pre-treatment for contaminants removal. In particular, "tar-like" contaminants were effectively rejected by the membrane with no evidence of fouling. In addition, testing was conducted using a hybrid membrane system, i.e., the CMS membrane in conjunction with the palladium membrane, to demonstrate that 99+% H{sub 2} purity and a high degree of CO{sub 2} capture could be achieved. In summary, the stability and performance of the full-scale hydrogen selective CMS membrane/module has been verified in multiple field tests in the presence of coal/biomass gasifier off-gas under this project. A promising process scheme has been developed for power generation and/or hydrogen coproduction with CCS based upon our proposed "one-box" process. Our preliminary economic analysis indicates about 10% reduction in the required electricity selling price and ~40% cost reduction in CCS on per ton CO{sub 2} can be achieved in comparison with the base case involving conventional WGS with a two-stage Selexsol® for CCS. Long term field tests (e.g., >1,000 hrs) with the incorporation of the catalyst for the WGS membrane reactor and more in-depth analysis of the process scheme are recommended for the future study.« less

Forecasts of non-Gaussian parameter spaces using Box-Cox transformations

NASA Astrophysics Data System (ADS)

Joachimi, B.; Taylor, A. N.

2011-09-01

Forecasts of statistical constraints on model parameters using the Fisher matrix abound in many fields of astrophysics. The Fisher matrix formalism involves the assumption of Gaussianity in parameter space and hence fails to predict complex features of posterior probability distributions. Combining the standard Fisher matrix with Box-Cox transformations, we propose a novel method that accurately predicts arbitrary posterior shapes. The Box-Cox transformations are applied to parameter space to render it approximately multivariate Gaussian, performing the Fisher matrix calculation on the transformed parameters. We demonstrate that, after the Box-Cox parameters have been determined from an initial likelihood evaluation, the method correctly predicts changes in the posterior when varying various parameters of the experimental setup and the data analysis, with marginally higher computational cost than a standard Fisher matrix calculation. We apply the Box-Cox-Fisher formalism to forecast cosmological parameter constraints by future weak gravitational lensing surveys. The characteristic non-linear degeneracy between matter density parameter and normalization of matter density fluctuations is reproduced for several cases, and the capabilities of breaking this degeneracy by weak-lensing three-point statistics is investigated. Possible applications of Box-Cox transformations of posterior distributions are discussed, including the prospects for performing statistical data analysis steps in the transformed Gaussianized parameter space.

Simplified method for the transverse bending analysis of twin celled concrete box girder bridges

NASA Astrophysics Data System (ADS)

Chithra, J.; Nagarajan, Praveen; S, Sajith A.

2018-03-01

Box girder bridges are one of the best options for bridges with span more than 25 m. For the study of these bridges, three-dimensional finite element analysis is the best suited method. However, performing three-dimensional analysis for routine design is difficult as well as time consuming. Also, software used for the three-dimensional analysis are very expensive. Hence designers resort to simplified analysis for predicting longitudinal and transverse bending moments. Among the many analytical methods used to find the transverse bending moments, SFA is the simplest and widely used in design offices. Results from simplified frame analysis can be used for the preliminary analysis of the concrete box girder bridges.From the review of literatures, it is found that majority of the work done using SFA is restricted to the analysis of single cell box girder bridges. Not much work has been done on the analysis multi-cell concrete box girder bridges. In this present study, a double cell concrete box girder bridge is chosen. The bridge is modelled using three- dimensional finite element software and the results are then compared with the simplified frame analysis. The study mainly focuses on establishing correction factors for transverse bending moment values obtained from SFA.

Zonal Flows and Long-lived Axisymmetric Pressure Bumps in Magnetorotational Turbulence

NASA Astrophysics Data System (ADS)

Johansen, A.; Youdin, A.; Klahr, H.

2009-06-01

We study the behavior of magnetorotational turbulence in shearing box simulations with a radial and azimuthal extent up to 10 scale heights. Maxwell and Reynolds stresses are found to increase by more than a factor of 2 when increasing the box size beyond two scale heights in the radial direction. Further increase of the box size has little or no effect on the statistical properties of the turbulence. An inverse cascade excites magnetic field structures at the largest scales of the box. The corresponding 10% variation in the Maxwell stress launches a zonal flow of alternating sub- and super-Keplerian velocity. This, in turn, generates a banded density structure in geostrophic balance between pressure and Coriolis forces. We present a simplified model for the appearance of zonal flows, in which stochastic forcing by the magnetic tension on short timescales creates zonal flow structures with lifetimes of several tens of orbits. We experiment with various improved shearing box algorithms to reduce the numerical diffusivity introduced by the supersonic shear flow. While a standard finite difference advection scheme shows signs of a suppression of turbulent activity near the edges of the box, this problem is eliminated by a new method where the Keplerian shear advection is advanced in time by interpolation in Fourier space.

MADS-box genes and floral development: the dark side.

PubMed

Heijmans, Klaas; Morel, Patrice; Vandenbussche, Michiel

2012-09-01

The origin of the flower during evolution has been a crucial step in further facilitating plants to colonize a wide range of different niches on our planet. The >250 000 species of flowering plants existing today display an astonishing diversity in floral architecture. For this reason, the flower is a very attractive subject for evolutionary developmental (evo-devo) genetics studies. Research during the last two decades has provided compelling evidence that the origin and functional diversification of MIKC(c) MADS-box transcription factors has played a critical role during evolution of flowering plants. As master regulators of floral organ identity, MADS-box proteins are at the heart of the classic ABC model for floral development. Despite the enormous progress made in the field of floral development, there still remain aspects that are less well understood. Here we highlight some of the dark corners within our current knowledge on MADS-box genes and flower development, which would be worthwhile investigating in more detail in future research. These include the general question of to what extent MADS-box gene functions are conserved between species, the function of TM8-clade MADS-box genes which so far have remained uncharacterized, the divergence within the A-function, and post-transcriptional regulation of the ABC-genes.

Effects of gear box vibration and mass imbalance on the dynamics of multi-stage gear transmissions

NASA Technical Reports Server (NTRS)

Choy, Fred K.; Tu, Yu K.; Zakrajsek, James J.; Townsend, Dennis P.

1991-01-01

The dynamic behavior of multistage gear transmission system, with the effects of gear-box-induced vibrations and rotor mass-imbalances is analyzed. The model method, using undamped frequencies and planar mode shapes, is used to reduce the degree-of-freedom of the system. The various rotor-bearing stages as well as lateral and torsional vibrations of each individual stage are coupled through localized gear-mesh-tooth interactions. Gear-box vibrations are coupled to the gear stage dynamics through bearing support forces. Transient and steady state dynamics of lateral and torsional vibrations of the geared system are examined in both time and frequency domain. A typical three-staged geared system is used as an example. Effects of mass-imbalance and gear box vibrations on the system dynamic behavior are presented in terms of modal excitation functions for both lateral and torsional vibrations. Operational characteristics and conclusions are drawn from the results presented.

Effects of gear box vibration and mass imbalance on the dynamics of multistage gear transmission

NASA Technical Reports Server (NTRS)

Choy, F. K.; Tu, Y. K.; Zakrajsek, J. J.; Townsend, D. P.

1991-01-01

The dynamic behavior of multistage gear transmission system, with the effects of gear-box-induced vibrations and rotor mass-imbalances is analyzed. The model method, using undamped frequencies and planar mode shapes, is used to reduce the degree-of-freedom of the system. The various rotor-bearing stages as well as lateral and torsional vibrations of each individual stage are coupled through localized gear-mesh-tooth interactions. Gear-box vibrations are coupled to the gear stage dynamics through bearing support forces. Transient and steady state dynamics of lateral and torsional vibrations of the geared system are examined in both time and frequency domain. A typical three-staged geared system is used as an example. Effects of mass-imbalance and gear box vibrations on the system dynamic behavior are presented in terms of modal excitation functions for both lateral and torsional vibrations. Operational characteristics and conclusions are drawn from the results presented.

The role of climate on inter-annual variation in stream nitrate fluxes and concentrations.

PubMed

Gascuel-Odoux, Chantal; Aurousseau, Pierre; Durand, Patrick; Ruiz, Laurent; Molenat, Jérôme

2010-11-01

In recent decades, temporal variations in nitrate fluxes and concentrations in temperate rivers have resulted from the interaction of anthropogenic and climatic factors. The effect of climatic drivers remains unclear, while the relative importance of the drivers seems to be highly site dependent. This paper focuses on 2-6 year variations called meso-scale variations, and analyses the climatic drivers of these variations in a study site characterized by high N inputs from intensive animal farming systems and shallow aquifers with impervious bedrock in a temperate climate. Three approaches are developed: 1) an analysis of long-term records of nitrate fluxes and nitrate concentrations in 30 coastal rivers of Western France, which were well-marked by meso-scale cycles in the fluxes and concentration with a slight hysteresis; 2) a test of the climatic control using a lumped two-box model, which demonstrates that hydrological assumptions are sufficient to explain these meso-scale cycles; and 3) a model of nitrate fluxes and concentrations in two contrasted catchments subjected to recent mitigation measures, which analyses nitrate fluxes and concentrations in relation to N stored in groundwater. In coastal rivers, hydrological drivers (i.e., effective rainfall), and particularly the dynamics of the water table and rather stable nitrate concentration, explain the meso-scale cyclic patterns. In the headwater catchment, agricultural and hydrological drivers can interact according to their settings. The requirements to better distinguish the effect of climate and human changes in integrated water management are addressed: long-term monitoring, coupling the analysis and the modelling of large sets of catchments incorporating different sizes, land uses and environmental factors. Copyright © 2009 Elsevier B.V. All rights reserved.

The Box-Cox power transformation on nursing sensitive indicators: Does it matter if structural effects are omitted during the estimation of the transformation parameter?

PubMed Central

2011-01-01

Background Many nursing and health related research studies have continuous outcome measures that are inherently non-normal in distribution. The Box-Cox transformation provides a powerful tool for developing a parsimonious model for data representation and interpretation when the distribution of the dependent variable, or outcome measure, of interest deviates from the normal distribution. The objectives of this study was to contrast the effect of obtaining the Box-Cox power transformation parameter and subsequent analysis of variance with or without a priori knowledge of predictor variables under the classic linear or linear mixed model settings. Methods Simulation data from a 3 × 4 factorial treatments design, along with the Patient Falls and Patient Injury Falls from the National Database of Nursing Quality Indicators (NDNQI®) for the 3rd quarter of 2007 from a convenience sample of over one thousand US hospitals were analyzed. The effect of the nonlinear monotonic transformation was contrasted in two ways: a) estimating the transformation parameter along with factors with potential structural effects, and b) estimating the transformation parameter first and then conducting analysis of variance for the structural effect. Results Linear model ANOVA with Monte Carlo simulation and mixed models with correlated error terms with NDNQI examples showed no substantial differences on statistical tests for structural effects if the factors with structural effects were omitted during the estimation of the transformation parameter. Conclusions The Box-Cox power transformation can still be an effective tool for validating statistical inferences with large observational, cross-sectional, and hierarchical or repeated measure studies under the linear or the mixed model settings without prior knowledge of all the factors with potential structural effects. PMID:21854614

The Box-Cox power transformation on nursing sensitive indicators: does it matter if structural effects are omitted during the estimation of the transformation parameter?

PubMed

Hou, Qingjiang; Mahnken, Jonathan D; Gajewski, Byron J; Dunton, Nancy

2011-08-19

Many nursing and health related research studies have continuous outcome measures that are inherently non-normal in distribution. The Box-Cox transformation provides a powerful tool for developing a parsimonious model for data representation and interpretation when the distribution of the dependent variable, or outcome measure, of interest deviates from the normal distribution. The objectives of this study was to contrast the effect of obtaining the Box-Cox power transformation parameter and subsequent analysis of variance with or without a priori knowledge of predictor variables under the classic linear or linear mixed model settings. Simulation data from a 3 × 4 factorial treatments design, along with the Patient Falls and Patient Injury Falls from the National Database of Nursing Quality Indicators (NDNQI® for the 3rd quarter of 2007 from a convenience sample of over one thousand US hospitals were analyzed. The effect of the nonlinear monotonic transformation was contrasted in two ways: a) estimating the transformation parameter along with factors with potential structural effects, and b) estimating the transformation parameter first and then conducting analysis of variance for the structural effect. Linear model ANOVA with Monte Carlo simulation and mixed models with correlated error terms with NDNQI examples showed no substantial differences on statistical tests for structural effects if the factors with structural effects were omitted during the estimation of the transformation parameter. The Box-Cox power transformation can still be an effective tool for validating statistical inferences with large observational, cross-sectional, and hierarchical or repeated measure studies under the linear or the mixed model settings without prior knowledge of all the factors with potential structural effects.

Evaluation of Pre-marketing Factors to Predict Post-marketing Boxed Warnings and Safety Withdrawals.

PubMed

Schick, Andreas; Miller, Kathleen L; Lanthier, Michael; Dal Pan, Gerald; Nardinelli, Clark

2017-06-01

An important goal in drug regulation is understanding serious safety issues with new drugs as soon as possible. Achieving this goal requires us to understand whether information provided during the Food and Drug Administration (FDA) drug review can predict serious safety issues that are usually identified after the product is approved. However, research on this topic remains understudied. In this paper, we examine whether any pre-marketing drug characteristics are associated with serious post-marketing safety actions. We study this question using an internal FDA database containing every new small molecule drug submitted to the FDA's Center for Drug Evaluation and Research (CDER) on or after November 21, 1997, and approved and commercially launched before December 31, 2009. Serious post-marketing safety actions include whether these drugs ever experienced either a post-marketing boxed warning or a withdrawal from the market due to safety concerns. A random effects logistic regression model was used to test whether any pre-marketing characteristics were associated with either post-marketing safety action. A total of 219 new molecular entities were analyzed. Among these drugs, 11 experienced a safety withdrawal and 30 received boxed warnings by July 31, 2016. Contrary to prevailing hypotheses, we find that neither clinical trial sample sizes nor review time windows are associated with the addition of a post-marketing boxed warning or safety withdrawal. However, we do find that new drugs approved with either a boxed warning or priority review are more likely to experience post-marketing boxed warnings. Furthermore, drugs approved with boxed warnings tend to receive post-marketing boxed warnings resulting from new safety information that are unrelated to the original warning. Drugs approved with a boxed warning are 3.88 times more likely to receive a post-marketing boxed warning, while drugs approved with a priority review are 3.51 times more likely to receive a post-marketing boxed warning. Although drugs approved with a boxed warning or priority review are more likely to experience serious post-marketing safety events, other information provided during the FDA drug review that is easy to quantify is generally not associated with post-marketing safety events. It appears that these post-marketing events are not discernible during a pre-marketing review and therefore might not be avoidable using current review data.

MADS-Box gene diversity in seed plants 300 million years ago.

PubMed

Becker, A; Winter, K U; Meyer, B; Saedler, H; Theissen, G

2000-10-01

MADS-box genes encode a family of transcription factors which control diverse developmental processes in flowering plants ranging from root development to flower and fruit development. Through phylogeny reconstructions, most of these genes can be subdivided into defined monophyletic gene clades whose members share similar expression patterns and functions. Therefore, the establishment of the diversity of gene clades was probably an important event in land plant evolution. In order to determine when these clades originated, we isolated cDNAs of 19 different MADS-box genes from Gnetum gnemon, a gymnosperm model species and thus a representative of the sister group of the angiosperms. Phylogeny reconstructions involving all published MADS-box genes were then used to identify gene clades containing putative orthologs from both angiosperm and gymnosperm lineages. Thus, the minimal number of MADS-box genes that were already present in the last common ancestor of extant gymnosperms and angiosperms was determined. Comparative expression studies involving pairs of putatively orthologous genes revealed a diversity of patterns that has been largely conserved since the time when the angiosperm and gymnosperm lineages separated. Taken together, our data suggest that there were already at least seven different MADS-box genes present at the base of extant seed plants about 300 MYA. These genes were probably already quite diverse in terms of both sequence and function. In addition, our data demonstrate that the MADS-box gene families of extant gymnosperms and angiosperms are of similar complexities.

Piano jacket for perceiving and playing music for patients with cerebral palsy.

PubMed

Lampe, Renée; Turova, Varvara; Alves-Pinto, Ana

2017-12-23

Patients with cerebral palsy with severe motor disabilities are limited not only in everyday life activities but also in choice of their hobbies. Playing a musical instrument is for the majority not possible, even though music constitutes a central component of many relaxation activities for people with disabilities. To give affected patients the opportunity to make music and to learn piano playing through somatosensory perception, a prototype of piano jacket was developed. A cycling jacket was equipped with boxes, each representing a musical note, incorporated into the sleeves. Each box contains vibration motors and LEDs. These can be used to translate the sequences of piano key presses performed at an external E-piano. An additional operation mode allows the user to actively play a melody himself by touching the same boxes that also incorporate touch sensor components. A working prototype of the piano jacket was developed. The sensory piano jacket provides patients with cerebral palsy and contractures the possibility to develop sensorimotor skills, motor abilities and participation in music-related activities. The jacket is planned to be used in music lessons. Implications for Rehabilitation The system is suitable even for patients with severe motor disabilities and especially joint contractures. Excellent handling through large easily accessible communication buttons. All building blocks are held in a garment, which allows for easy portability and gripping comfort.

Abundant box jellyfish, Chironex sp. (Cnidaria: Cubozoa: Chirodropidae), discovered at depths of over 50 m on western Australian coastal reefs.

PubMed

Keesing, John K; Strzelecki, Joanna; Stowar, Marcus; Wakeford, Mary; Miller, Karen J; Gershwin, Lisa-Ann; Liu, Dongyan

2016-02-29

Box jellyfish cause human fatalities and have a life cycle and habit associated with shallow waters (<5 m) in mangrove creeks, coastal beaches, embayments. In north-western Australia, tow video and epibenthic sled surveys discovered large numbers (64 in a 1500 m tow or 0.05 m(-2)) of Chironex sp. very near to the benthos (<50 cm) at depths of 39-56 m. This is the first record of a population of box jellyfish closely associated with the benthos at such depths. Chironex were not widespread, occurring only in 2 of 33 tow videos and 3 of 41 epibenthic sleds spread over 2000 km(2). All Chironex filmed or captured were on low to medium relief reefs with rich filter feeder communities. None were on soft sediment habitat despite these habitats comprising 49% of all sites. The importance of the reef habitat to Chironex remains unclear. Being associated with filter feeder communities might represent a hazard, and other studies have shown C. fleckeri avoid habitats which represent a risk of entanglement of their tentacles. Most of our observations were made during the period of lowest tidal current flow in the morning. This may represent a period favourable for active hunting for prey close to the seabed.

Evolving Waves and Turbulence in the Outer Corona and Inner Heliosphere: The Accelerating Expanding Box

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tenerani, Anna; Velli, Marco

Alfvénic fluctuations in the solar wind display many properties reflecting an ongoing nonlinear cascade, e.g., a well-defined spectrum in frequency, together with some characteristics more commonly associated with the linear propagation of waves from the Sun, such as the variation of fluctuation amplitude with distance, dominated by solar wind expansion effects. Therefore, both nonlinearities and expansion must be included simultaneously in any successful model of solar wind turbulence evolution. Because of the disparate spatial scales involved, direct numerical simulations of turbulence in the solar wind represent an arduous task, especially if one wants to go beyond the incompressible approximation. Indeed,more » most simulations neglect solar wind expansion effects entirely. Here we develop a numerical model to simulate turbulent fluctuations from the outer corona to 1 au and beyond, including the sub-Alfvénic corona. The accelerating expanding box (AEB) extends the validity of previous expanding box models by taking into account both the acceleration of the solar wind and the inhomogeneity of background density and magnetic field. Our method incorporates a background accelerating wind within a magnetic field that naturally follows the Parker spiral evolution using a two-scale analysis in which the macroscopic spatial effect coupling fluctuations with background gradients becomes a time-dependent coupling term in a homogeneous box. In this paper we describe the AEB model in detail and discuss its main properties, illustrating its validity by studying Alfvén wave propagation across the Alfvén critical point.« less

Barrel organ of plate tectonics - a new tool for outreach and education

NASA Astrophysics Data System (ADS)

Broz, Petr; Machek, Matěj; Šorm, Zdar

2016-04-01

Plate tectonics is the major geological concept to explain dynamics and structure of Earth's outer shell, the lithosphere. In the plate tectonic theory processes in the Earth lithosphere and its dynamics is driven by the relative motion and interaction of lithospheric plates. Geologically most active regions on Earth often correlate with the lithospheric plate boundaries. Thus for explaining the earth surface evolution, mountain building, volcanism and earthquake origin it is important to understand processes at the plate boundaries. However these processes associated with plate tectonics usually require significant period of time to take effects, therefore, their entire cycles cannot be directly observed in the nature by humans. This makes a challenge for scientists studying these processes, but also for teachers and popularizers trying to explain them to students and to the general public. Therefore, to overcome this problem, we developed a mechanical model of plate tectonics enabling demonstration of most important processes associated with plate tectonics in real time. The mechanical model is a wooden box, more specifically a special type of barrel organ, with hand painted backdrops in the front side. These backdrops are divided into several components representing geodynamic processes associated with plate tectonics, specifically convective currents occurring in the mantle, sea-floor spreading, a subduction of the oceanic crust under the continental crust, partial melting and volcanism associated with subduction, a formation of magmatic stripes, an ascent of mantle plume throughout the mantle, a volcanic activity associated with hot spots, and a formation and degradation of volcanic islands on moving lithospheric plate. All components are set in motion by a handle controlled by a human operator, and the scene is illuminated with colored lights controlled automatically by an electric device embedded in the box. Operation of the model may be seen on www.geologyinexperiments.com where additional pictures and details about the construction are available. This mechanical model represents a unique outreach tool how to present processes, normally taking eons to occur, to students and to the public in easy and funny way, and how to attract their attention to the most important concept in geology.

Water cycling between ocean and mantle: Super-earths need not be waterworlds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cowan, Nicolas B.; Abbot, Dorian S., E-mail: n-cowan@northwestern.edu

2014-01-20

Large terrestrial planets are expected to have muted topography and deep oceans, implying that most super-Earths should be entirely covered in water, so-called waterworlds. This is important because waterworlds lack a silicate weathering thermostat so their climate is predicted to be less stable than that of planets with exposed continents. In other words, the continuously habitable zone for waterworlds is much narrower than for Earth-like planets. A planet's water is partitioned, however, between a surface reservoir, the ocean, and an interior reservoir, the mantle. Plate tectonics transports water between these reservoirs on geological timescales. Degassing of melt at mid-ocean ridgesmore » and serpentinization of oceanic crust depend negatively and positively on seafloor pressure, respectively, providing a stabilizing feedback on long-term ocean volume. Motivated by Earth's approximately steady-state deep water cycle, we develop a two-box model of the hydrosphere and derive steady-state solutions to the water partitioning on terrestrial planets. Critically, hydrostatic seafloor pressure is proportional to surface gravity, so super-Earths with a deep water cycle will tend to store more water in the mantle. We conclude that a tectonically active terrestrial planet of any mass can maintain exposed continents if its water mass fraction is less than ∼0.2%, dramatically increasing the odds that super-Earths are habitable. The greatest source of uncertainty in our study is Earth's current mantle water inventory: the greater its value, the more robust planets are to inundation. Lastly, we discuss how future missions can test our hypothesis by mapping the oceans and continents of massive terrestrial planets.« less

Peanuts, brezels and bananas: food for thought on the orbital structure of the Galactic bulge

NASA Astrophysics Data System (ADS)

Portail, Matthieu; Wegg, Christopher; Gerhard, Ortwin

2015-06-01

Recent observations have discovered the presence of a box/peanut or X-shape structure in the Galactic bulge. Such box/peanut structures are common in external disc galaxies, and are well known in N-body simulations where they form following the buckling instability of a bar. From studies of analytical potentials and N-body models, it has been claimed in the past that box/peanut bulges are supported by `bananas', or x1v1 orbits. We present here a set of N-body models where instead the peanut bulge is mainly supported by brezel-like orbits, allowing strong peanuts to form with short extent relative to the bar length. This shows that stars in the X-shape do not necessarily stream along banana orbits which follow the arms of the X-shape. The brezel orbits are also found to be the main orbital component supporting the peanut shape in our recent made-to-measure dynamical models of the Galactic bulge. We also show that in these models the fraction of stellar orbits that contribute to the X-structure account for 40-45 per cent of the stellar mass.

Evaluating and improving the representation of heteroscedastic errors in hydrological models

NASA Astrophysics Data System (ADS)

McInerney, D. J.; Thyer, M. A.; Kavetski, D.; Kuczera, G. A.

2013-12-01

Appropriate representation of residual errors in hydrological modelling is essential for accurate and reliable probabilistic predictions. In particular, residual errors of hydrological models are often heteroscedastic, with large errors associated with high rainfall and runoff events. Recent studies have shown that using a weighted least squares (WLS) approach - where the magnitude of residuals are assumed to be linearly proportional to the magnitude of the flow - captures some of this heteroscedasticity. In this study we explore a range of Bayesian approaches for improving the representation of heteroscedasticity in residual errors. We compare several improved formulations of the WLS approach, the well-known Box-Cox transformation and the more recent log-sinh transformation. Our results confirm that these approaches are able to stabilize the residual error variance, and that it is possible to improve the representation of heteroscedasticity compared with the linear WLS approach. We also find generally good performance of the Box-Cox and log-sinh transformations, although as indicated in earlier publications, the Box-Cox transform sometimes produces unrealistically large prediction limits. Our work explores the trade-offs between these different uncertainty characterization approaches, investigates how their performance varies across diverse catchments and models, and recommends practical approaches suitable for large-scale applications.

Modeling of Particle Acceleration at Multiple Shocks via Diffusive Shock Acceleration: Preliminary Results

NASA Technical Reports Server (NTRS)

Parker, L. Neergaard; Zank, G. P.

2013-01-01

Successful forecasting of energetic particle events in space weather models require algorithms for correctly predicting the spectrum of ions accelerated from a background population of charged particles. We present preliminary results from a model that diffusively accelerates particles at multiple shocks. Our basic approach is related to box models in which a distribution of particles is diffusively accelerated inside the box while simultaneously experiencing decompression through adiabatic expansion and losses from the convection and diffusion of particles outside the box. We adiabatically decompress the accelerated particle distribution between each shock by either the method explored in Melrose and Pope (1993) and Pope and Melrose (1994) or by the approach set forth in Zank et al. (2000) where we solve the transport equation by a method analogous to operator splitting. The second method incorporates the additional loss terms of convection and diffusion and allows for the use of a variable time between shocks. We use a maximum injection energy (E(sub max)) appropriate for quasi-parallel and quasi-perpendicular shocks and provide a preliminary application of the diffusive acceleration of particles by multiple shocks with frequencies appropriate for solar maximum (i.e., a non-Markovian process).

The DnaA Tale

PubMed Central

Hansen, Flemming G.; Atlung, Tove

2018-01-01

More than 50 years have passed since the presentation of the Replicon Model which states that a positively acting initiator interacts with a specific site on a circular chromosome molecule to initiate DNA replication. Since then, the origin of chromosome replication, oriC, has been determined as a specific region that carries sequences required for binding of positively acting initiator proteins, DnaA-boxes and DnaA proteins, respectively. In this review we will give a historical overview of significant findings which have led to the very detailed knowledge we now possess about the initiation process in bacteria using Escherichia coli as the model organism, but emphasizing that virtually all bacteria have DnaA proteins that interacts with DnaA boxes to initiate chromosome replication. We will discuss the dnaA gene regulation, the special features of the dnaA gene expression, promoter strength, and translation efficiency, as well as, the DnaA protein, its concentration, its binding to DnaA-boxes, and its binding of ATP or ADP. Furthermore, we will discuss the different models for regulation of initiation which have been proposed over the years, with particular emphasis on the Initiator Titration Model. PMID:29541066

The Yeast Forkhead Transcription Factors Fkh1 and Fkh2 Regulate Lifespan and Stress Response Together with the Anaphase-Promoting Complex

PubMed Central

Postnikoff, Spike D. L.; Malo, Mackenzie E.; Wong, Berchman; Harkness, Troy A. A.

2012-01-01

Forkhead box O (FOXO) transcription factors have a conserved function in regulating metazoan lifespan. A key function in this process involves the regulation of the cell cycle and stress responses including free radical scavenging. We employed yeast chronological and replicative lifespan assays, as well as oxidative stress assays, to explore the potential evolutionary conservation of function between the FOXOs and the yeast forkhead box transcription factors FKH1 and FKH2. We report that the deletion of both FKH genes impedes normal lifespan and stress resistance, particularly in stationary phase cells, which are non-responsive to caloric restriction. Conversely, increased expression of the FKHs leads to extended lifespan and improved stress response. Here we show the Anaphase-Promoting Complex (APC) genetically interacts with the Fkh pathway, likely working in a linear pathway under normal conditions, as fkh1Δ fkh2Δ post-mitotic survival is epistatic to that observed in apc5CA mutants. However, under stress conditions, post-mitotic survival is dramatically impaired in apc5CA fkh1Δ fkh2Δ, while increased expression of either FKH rescues APC mutant growth defects. This study establishes the FKHs role as evolutionarily conserved regulators of lifespan in yeast and identifies the APC as a novel component of this mechanism under certain conditions, likely through combined regulation of stress response, genomic stability, and cell cycle regulation. PMID:22438832

Fuel Economy and Emissions Effects of Low Tire Pressure, Open Windows, Roof Top and Hitch-Mounted Cargo, and Trailer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, John F; Huff, Shean P; West, Brian H

To quantify the fuel economy (FE) effect of some common vehicle accessories or alterations, a compact passenger sedan and a sport utility vehicle (SUV) were subjected to SAE J2263 coastdown procedures. Coastdowns were conducted with low tire pressure, all windows open, with a roof top or hitch-mounted cargo carrier, and with the SUV pulling an enclosed cargo trailer. From these coastdowns, vehicle dynamometer coefficients were developed which enabled the execution of vehicle dynamometer experiments to determine the effect of these changes on vehicle FE and emissions over standard drive cycles and at steady highway speeds. The FE penalty associated withmore » the rooftop cargo box mounted on the compact sedan was as high as 25-27% at higher speeds, where the aerodynamic drag is most pronounced. For both vehicles, use of a hitch mounted cargo tray carrying a similar load resulted in very small FE penalties, unlike the rooftop cargo box. The results for the SUV pulling a 3500 pound enclosed cargo trailer were rather dramatic, resulting in FE penalties ranging from 30%, for the city cycle, to 50% at 80 mph, at which point significant CO generation indicated protective enrichment due to high load. Low tire pressure cases resulted in negligible to 10% FE penalty depending on the specific case and test point. Driving with all four windows open decreased FE by 4-8.5% for the compact sedan, and 1-4% for the SUV.« less

Spontaneous cocoa bean fermentation carried out in a novel-design stainless steel tank: influence on the dynamics of microbial populations and physical-chemical properties.

PubMed

de Melo Pereira, Gilberto Vinícius; Magalhães, Karina Teixeira; de Almeida, Euziclei Gonzaga; da Silva Coelho, Irene; Schwan, Rosane Freitas

2013-02-01

Spontaneous cocoa bean fermentations carried out in a novel-design 40-kg-capacity stainless steel tank (SST) was studied in parallel to traditional Brazilian methods of fermentation in wooden boxes (40-kg-capacity wooden boxes (WB1) and 600-kg-capacity wooden boxes (WB2)) using a multiphasic approach that entailed culture-dependent and -independent microbiological analyses of fermenting cocoa bean pulp samples and target metabolite analyses of both cocoa pulp and cotyledons. Both microbiological approaches revealed that the dominant species of major physiological roles were the same for fermentations in SST, relative to boxes. These species consisted of Saccharomyces cerevisiae and Hanseniaspora sp. in the yeast group; Lactobacillus fermentum and L. plantarum in the lactic acid bacteria (LAB) group; Acetobacter tropicalis belonging to the acetic acid bacteria (AAB) group; and Bacillus subtilis in the Bacillaceae family. A greater diversity of bacteria and non-Saccharomyces yeasts was observed in box fermentations. Additionally, a potentially novel AAB belonging to the genus Asaia was isolated during fermentation in WB1. Cluster analysis of the rRNA genes-PCR-DGGE profiles revealed a more complex picture of the box samples, indicating that bacterial and yeast ecology were fermentation-specific processes (wooden boxes vs. SST). The profile of carbohydrate consumption and fermentation products in the pulp and beans showed similar trends during both fermentation processes. However, the yeast-AAB-mediated conversion of carbohydrates into ethanol, and subsequent conversion of ethanol into acetic acid, was achieved with greater efficiency in SST, while temperatures were generally higher during fermentation in wooden boxes. With further refinements, the SST model may be useful in designing novel bioreactors for the optimisation of cocoa fermentation with starter cultures. Copyright © 2012 Elsevier B.V. All rights reserved.

Model reconstruction using POD method for gray-box fault detection

NASA Technical Reports Server (NTRS)

Park, H. G.; Zak, M.

2003-01-01

This paper describes using Proper Orthogonal Decomposition (POD) method to create low-order dynamical models for the Model Filter component of Beacon-based Exception Analysis for Multi-missions (BEAM).

α-Phellandrene alters expression of genes associated with DNA damage, cell cycle, and apoptosis in murine leukemia WEHI-3 cells.

PubMed

Lin, Jen-Jyh; Yu, Chien-Chih; Lu, Kung-Wen; Chang, Shu-Jen; Yu, Fu-Shun; Liao, Ching-Lung; Lin, Jaung-Geng; Chung, Jing-Gung

2014-08-01

α-phellandrene (α-PA) is a cyclic monoterpene, present in natural plants such as Schinus molle L. α-PA promotes immune responses in mice in vivo. However, there is no available information on whether α-PA affects gene expression in leukemia cells. The present study determined effects of α-PA on expression levels of genes associated with DNA damage, cell cycle and apoptotic cell death in mouse leukemia WEHI-3 cells. WEHI-3 cells were treated with 10 μM α-PA for 24 h, cells were harvested and total RNA was extracted, and gene expression was analyzed by cDNA microarray. Results indicated that α-PA up-regulated 10 genes 4-fold, 13 by over 3-fold and 175 by over 2-fold; 21 genes were down-regulated by over 4-fold, 26 genes by over 3-fold and expression of 204 genes was altered by at leas 2-fold compared with the untreated control cells. DNA damage-associated genes such as DNA damage-inducer transcript 4 and DNA fragmentation factor were up-regulated by 4-fold and over 2-fold, respectively; cell-cycle check point genes such as cyclin G2 and cyclin-dependent kinases inhibitor 2D and IA (p21) were up-regulated by over 3-fold and over 2-fold, respectively; apoptosis-associated genes such as BCL2/adenovirus EIB interacting protein 3, XIAP-associated factor 1, BCL2 modifying factor, caspase-8 and FADD-like apoptosis regulator were over 2-fold up-regulated. Furthermore, DNA damage-associated gene TATA box binding protein was over 4-fold down-regulated, and D19Ertd652c (DNA segment) over 2-fold down-regulated; cell cycle-associated gene cyclin E2 was over 2-fold down-regulated; apoptosis associated gene growth arrest-specific 5 was over 9-fold down-regulated, Gm5426 (ATP synthase) was over 3-fold down-regulated, and death box polypeptide 33 was over 2-fold down-regulated. Based on these observations, α-PA altered gene expression in WEHI-3 cells in vitro. Copyright© 2014 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea

NASA Astrophysics Data System (ADS)

Romaniello, Stephen J.; Derry, Louis A.

2010-08-01

We test the ability of a new 1-D intermediate-complexity box model (ICBM) that includes process-based C, N, P, O, and S biogeochemistry to simulate profiles and fluxes of biogeochemically reactive species across a wide range of ocean redox states. The ICBM was developed to simulate whole ocean processes for paleoceanographic applications and has been tested with data from the modern global ocean. Here we adapt the circulation submodel of the ICBM to simulate water mass exchange and eddy diffusion processes in the Black Sea but make only very minor changes to the biogeochemical submodel. We force the model with estimated natural and anthropogenic inputs of tracers and nutrients to the Black Sea and compare the results of the simulations to modern observations. Ventilation of the Black Sea is modeled by depth-dependent entrainment of Cold Intermediate Layer water into Bosphorus plume water and subsequent intrusion into deep layers. The simulated profiles of circulation tracers θ, salinity, CFC-12, and radiocarbon agree well with available data, suggesting that the model does a reasonable job of representing physical exchange. Vertical profiles of biogeochemically active components are in good overall agreement with observations. The lack of trace metal (Mn and Fe) cycling in the model results in some discrepancies between the simulated profiles and observation across the suboxic zone; however, the overall redox balance is not sensitive to this difference. We compare modeled basin-wide biogeochemical fluxes to available estimates, but in a number of cases uncertainties in modern budgets limit our ability to test the model rigorously. In agreement with earlier work we find that fixed N losses via thiodenitrification are likely a major pathway in the Black Sea N cycle. Overall, the same biogeochemical submodel used to simulate the modern global ocean appears to perform well in simulating Black Sea processes without requiring significant modification. The ability of a single model to perform across a wide range of redox states is an important prerequisite for applying the ICBM to deep time paleoceanographic problems. The model source code is available as MATLAB™ 7 m-files provided as auxiliary material.

A local leaky-box model for the local stellar surface density-gas surface density-gas phase metallicity relation

NASA Astrophysics Data System (ADS)

Zhu, Guangtun Ben; Barrera-Ballesteros, Jorge K.; Heckman, Timothy M.; Zakamska, Nadia L.; Sánchez, Sebastian F.; Yan, Renbin; Brinkmann, Jonathan

2017-07-01

We revisit the relation between the stellar surface density, the gas surface density and the gas-phase metallicity of typical disc galaxies in the local Universe with the SDSS-IV/MaNGA survey, using the star formation rate surface density as an indicator for the gas surface density. We show that these three local parameters form a tight relationship, confirming previous works (e.g. by the PINGS and CALIFA surveys), but with a larger sample. We present a new local leaky-box model, assuming star-formation history and chemical evolution is localized except for outflowing materials. We derive closed-form solutions for the evolution of stellar surface density, gas surface density and gas-phase metallicity, and show that these parameters form a tight relation independent of initial gas density and time. We show that, with canonical values of model parameters, this predicted relation match the observed one well. In addition, we briefly describe a pathway to improving the current semi-analytic models of galaxy formation by incorporating the local leaky-box model in the cosmological context, which can potentially explain simultaneously multiple properties of Milky Way-type disc galaxies, such as the size growth and the global stellar mass-gas metallicity relation.

HMGB1 a-Box Reverses Brain Edema and Deterioration of Neurological Function in a Traumatic Brain Injury Mouse Model.

PubMed

Yang, Lijun; Wang, Feng; Yang, Liang; Yuan, Yunchao; Chen, Yan; Zhang, Gengshen; Fan, Zhenzeng

2018-01-01

Traumatic brain injury (TBI) is a complex neurological injury in young adults lacking effective treatment. Emerging evidences suggest that inflammation contributes to the secondary brain injury following TBI, including breakdown of the blood brain barrier (BBB), subsequent edema and neurological deterioration. High mobility group box-1 (HMGB1) has been identified as a key cytokine in the inflammation reaction following TBI. Here, we investigated the therapeutic efficacy of HMGB1 A-box fragment, an antagonist competing with full-length HMGB1 for receptor binding, against TBI. TBI was induced by controlled cortical impact (CCI) in adult male mice. HMGB1 A-box fragment was given intravenously at 2 mg/kg/day for 3 days after CCI. HMGB1 A-box-treated CCI mice were compared with saline-treated CCI mice and sham mice in terms of BBB disruption evaluated by Evan's blue extravasation, brain edema by brain water content, cell death by propidium iodide staining, inflammation by Western blot and ELISA assay for cytokine productions, as well as neurological functions by the modified Neurological Severity Score, wire grip and beam walking tests. HMGB1 A-box reversed brain damages in the mice following TBI. It significantly reduced brain edema by protecting integrity of the BBB, ameliorated cell degeneration, and decreased expression of pro-inflammatory cytokines released in injured brain after TBI. These cellular and molecular effects were accompanied by improved behavioral performance in TBI mice. Notably, HMGB1 A-box blocked IL-1β-induced HMGB1 release, and preferentially attenuated TLR4, Myd88 and P65 in astrocyte cultures. Our data suggest that HMGB1 is involved in CCI-induced TBI, which can be inhibited by HMGB1 A-box fragment. Therefore, HMGB1 A-box fragment may have therapeutic potential for the secondary brain damages in TBI. © 2018 The Author(s). Published by S. Karger AG, Basel.

Fluorescence probing of T box antiterminator RNA: Insights into riboswitch discernment of the tRNA discriminator base

PubMed Central

Means, John A.; Simson, Crystal M.; Zhou, Shu; Rachford, Aaron A.; Rack, Jeffrey J.; Hines, Jennifer V.

2009-01-01

The T box transcription antitermination riboswitch is one of the main regulatory mechanisms utilized by Gram-positive bacteria to regulate genes that are involved in amino acid metabolism. The details of the antitermination event, including the role that Mg2+ plays, in this riboswitch have not been completely elucidated. In these studies, details of the antitermination event were investigated utilizing 2-aminopurine to monitor structural changes of a model antiterminator RNA when it was bound to model tRNA. Based on the results of these fluorescence studies, the model tRNA binds the model antiterminator RNA via an induced fit. This binding is enhanced by the presence of Mg2+, facilitating the complete base pairing of the model tRNA acceptor end with the complementary bases in the model antiterminator bulge. PMID:19755116

Late Quaternary paleohydrology deduced from new marine sediment cores taken on the proximal Amazon continental margin

NASA Astrophysics Data System (ADS)

Nace, T.; Baker, P. A.; Dwyer, G. S.; Hollander, D. J.; Silva, C. G.

2010-12-01

Throughout the late Quaternary the Amazon Basin has been influenced by abrupt North-South climate forcing and has undergone several large climate variations as recorded in previously reported speleothem records. Despite its importance in the global carbon cycle there are few continuous, high-resolution records of the Amazon Basin that date back to and beyond the last glacial period. In this study, we report the first results of a marine geological expedition to the Amazon continental shelf and fan region. During this expedition we collected eight ~30 meter piston cores along with gravity, box and multicores. At both sites we undertook complementary multibeam and high resolution seismic reflection profiling. Analyses will be presented from two sets of box/gravity/piston cores. One core (32m) is from a high sedimentation site on the northern flank of the main submarine canyon within the Amazon Fan complex at 1700m water depth. The other core (30m) is located on a seamount to the south of the Amazon Fan complex at 3100m water depth. A mixed assemblage of foraminifera is used for 14C dating to obtain an age model and bulk organic geochemistry is analyzed to determine percent organic carbon, C/N ratios, δ13C and δ15N. The cores were continuously measured shipboard for magnetic susceptibility and gamma density using a GEOTEK logger. These findings uncover the contribution of pelagic and terrestrial organic matter, whether the terrigenous carbon is derived from C3 versus C4 vegetation, and whether the marine organic matter is composed of phytoplankton or marine algae.

NASA Technical Interchange Meeting (TIM): Advanced Technology Lifecycle Analysis System (ATLAS) Technology Tool Box

NASA Technical Reports Server (NTRS)

ONeil, D. A.; Craig, D. A.; Christensen, C. B.; Gresham, E. C.

2005-01-01

The objective of this Technical Interchange Meeting was to increase the quantity and quality of technical, cost, and programmatic data used to model the impact of investing in different technologies. The focus of this meeting was the Technology Tool Box (TTB), a database of performance, operations, and programmatic parameters provided by technologists and used by systems engineers. The TTB is the data repository used by a system of models known as the Advanced Technology Lifecycle Analysis System (ATLAS). This report describes the result of the November meeting, and also provides background information on ATLAS and the TTB.

Grey-box state-space identification of nonlinear mechanical vibrations

NASA Astrophysics Data System (ADS)

Noël, J. P.; Schoukens, J.

2018-05-01

The present paper deals with the identification of nonlinear mechanical vibrations. A grey-box, or semi-physical, nonlinear state-space representation is introduced, expressing the nonlinear basis functions using a limited number of measured output variables. This representation assumes that the observed nonlinearities are localised in physical space, which is a generic case in mechanics. A two-step identification procedure is derived for the grey-box model parameters, integrating nonlinear subspace initialisation and weighted least-squares optimisation. The complete procedure is applied to an electrical circuit mimicking the behaviour of a single-input, single-output (SISO) nonlinear mechanical system and to a single-input, multiple-output (SIMO) geometrically nonlinear beam structure.

Peripheral refraction profiles in subjects with low foveal refractive errors.

PubMed

Tabernero, Juan; Ohlendorf, Arne; Fischer, M Dominik; Bruckmann, Anna R; Schiefer, Ulrich; Schaeffel, Frank

2011-03-01

To study the variability of peripheral refraction in a population of 43 subjects with low foveal refractive errors. A scan of the refractive error in the vertical pupil meridian of the right eye of 43 subjects (age range, 18 to 80 years, foveal spherical equivalent, < ± 2.5 diopter) over the central ± 45° of the visual field was performed using a recently developed angular scanning photorefractor. Refraction profiles across the visual field were fitted with four different models: (1) "flat model" (refractions about constant across the visual field), (2) "parabolic model" (refractions follow about a parabolic function), (3) "bi-linear model" (linear change of refractions with eccentricity from the fovea to the periphery), and (4) "box model" ("flat" central area with a linear change in refraction from a certain peripheral angle). Based on the minimal residuals of each fit, the subjects were classified into one of the four models. The "box model" accurately described the peripheral refractions in about 50% of the subjects. Peripheral refractions in six subjects were better characterized by a "linear model," in eight subjects by a "flat model," and in eight by the "parabolic model." Even after assignment to one of the models, the variability remained strikingly large, ranging from -0.75 to 6 diopter in the temporal retina at 45° eccentricity. The most common peripheral refraction profile (observed in nearly 50% of our population) was best described by the "box model." The high variability among subjects may limit attempts to reduce myopia progression with a uniform lens design and may rather call for a customized approach.

An Extended Eddy-Diffusivity Mass-Flux Scheme for Unified Representation of Subgrid-Scale Turbulence and Convection

NASA Astrophysics Data System (ADS)

Tan, Zhihong; Kaul, Colleen M.; Pressel, Kyle G.; Cohen, Yair; Schneider, Tapio; Teixeira, João.

2018-03-01

Large-scale weather forecasting and climate models are beginning to reach horizontal resolutions of kilometers, at which common assumptions made in existing parameterization schemes of subgrid-scale turbulence and convection—such as that they adjust instantaneously to changes in resolved-scale dynamics—cease to be justifiable. Additionally, the common practice of representing boundary-layer turbulence, shallow convection, and deep convection by discontinuously different parameterizations schemes, each with its own set of parameters, has contributed to the proliferation of adjustable parameters in large-scale models. Here we lay the theoretical foundations for an extended eddy-diffusivity mass-flux (EDMF) scheme that has explicit time-dependence and memory of subgrid-scale variables and is designed to represent all subgrid-scale turbulence and convection, from boundary layer dynamics to deep convection, in a unified manner. Coherent up and downdrafts in the scheme are represented as prognostic plumes that interact with their environment and potentially with each other through entrainment and detrainment. The more isotropic turbulence in their environment is represented through diffusive fluxes, with diffusivities obtained from a turbulence kinetic energy budget that consistently partitions turbulence kinetic energy between plumes and environment. The cross-sectional area of up and downdrafts satisfies a prognostic continuity equation, which allows the plumes to cover variable and arbitrarily large fractions of a large-scale grid box and to have life cycles governed by their own internal dynamics. Relatively simple preliminary proposals for closure parameters are presented and are shown to lead to a successful simulation of shallow convection, including a time-dependent life cycle.

Changes of deep Pacific overturning circulation and carbonate chemistry during middle Miocene East Antarctic ice sheet expansion

NASA Astrophysics Data System (ADS)

Ma, Xiaolin; Tian, Jun; Ma, Wentao; Li, Ke; Yu, Jimin

2018-02-01

East Antarctic ice sheet expansion (EAIE) at ∼13.9 Ma in the middle Miocene represents a major climatic event during the long-term Cenozoic cooling, but ocean circulation and carbon cycle changes during this event remain unclear. Here, we present new fish teeth isotope (εNd) and benthic foraminiferal B/Ca records from the South China Sea (SCS), newly integrated meridional Pacific benthic foraminiferal δ18O and δ13C records and simulated results from a biogeochemical box model to explore the responses of deep Pacific Ocean circulation and carbon cycle across EAIE. The εNd and meridional benthic δ13C records reveal a more isolated Pacific Deep Water (PDW) and a sluggish Pacific meridional overturning circulation during the post-EAIE with respect to the pre-EAIE owing to weakened southern-sourced deep water formation. The deep-water [CO23-] and calcium carbonate mass accumulation rate in the SCS display markedly similar increases followed by recoveries to the pre-EAIE level during EAIE, which were probably caused by a shelf-basin shift of CaCO3 deposition and strengthened weathering due to a sea level fall within EAIE. The model results show that the ∼1‰ positive δ13C excursion during EAIE could be attributed to increased weathering of high-δ13C shelf carbonates and a terrestrial carbon reservoir expansion. The drawdown of atmospheric CO2 over the middle Miocene were probably caused by combined effects of increased shelf carbonate weathering, expanded land biosphere carbon storage and a sluggish deep Pacific meridional overturning circulation.

An Extended Eddy‐Diffusivity Mass‐Flux Scheme for Unified Representation of Subgrid‐Scale Turbulence and Convection

PubMed Central

Tan, Zhihong; Kaul, Colleen M.; Pressel, Kyle G.; Cohen, Yair; Teixeira, João

2018-01-01

Abstract Large‐scale weather forecasting and climate models are beginning to reach horizontal resolutions of kilometers, at which common assumptions made in existing parameterization schemes of subgrid‐scale turbulence and convection—such as that they adjust instantaneously to changes in resolved‐scale dynamics—cease to be justifiable. Additionally, the common practice of representing boundary‐layer turbulence, shallow convection, and deep convection by discontinuously different parameterizations schemes, each with its own set of parameters, has contributed to the proliferation of adjustable parameters in large‐scale models. Here we lay the theoretical foundations for an extended eddy‐diffusivity mass‐flux (EDMF) scheme that has explicit time‐dependence and memory of subgrid‐scale variables and is designed to represent all subgrid‐scale turbulence and convection, from boundary layer dynamics to deep convection, in a unified manner. Coherent up and downdrafts in the scheme are represented as prognostic plumes that interact with their environment and potentially with each other through entrainment and detrainment. The more isotropic turbulence in their environment is represented through diffusive fluxes, with diffusivities obtained from a turbulence kinetic energy budget that consistently partitions turbulence kinetic energy between plumes and environment. The cross‐sectional area of up and downdrafts satisfies a prognostic continuity equation, which allows the plumes to cover variable and arbitrarily large fractions of a large‐scale grid box and to have life cycles governed by their own internal dynamics. Relatively simple preliminary proposals for closure parameters are presented and are shown to lead to a successful simulation of shallow convection, including a time‐dependent life cycle. PMID:29780442

The BBX subfamily IV: additional cogs and sprockets to fine-tune light-dependent development.

PubMed

Sarmiento, Felipe

2013-04-01

Plants depend on light during all phases of its life cycle, and have evolved a complex signaling network to constantly monitor its surroundings. Photomorphogenesis, a process during which the plant reprograms itself in order to dwell life in presence of light is one of the most studied phenomena in plants. Recent mutant analyses using model plant Arabidopsis thaliana and protein interaction assays have unraveled a new set of players, an 8-member subfamily of B-box proteins, known as BBX subfamily IV. For the members of this subfamily, positive (BBX21, BBX22) as well as negative (BBX24) functions have been described for its members, showing a strong association to two major players of the photomorphogenic cascade, HY5 and COP1. The roles of these new BBX regulators are not restricted to photomorphogenesis, but also have functions in other facets of light-dependent development. Therefore this newly identified set of regulators has opened up new insights into the understanding of the fine-tuning of this complex process.

Hyperspectral imaging as a technique for investigating the effect of consolidating materials on wood

NASA Astrophysics Data System (ADS)

Bonifazi, Giuseppe; Serranti, Silvia; Capobianco, Giuseppe; Agresti, Giorgia; Calienno, Luca; Picchio, Rodolfo; Lo Monaco, Angela; Santamaria, Ulderico; Pelosi, Claudia

2017-01-01

The focus of this study was to investigate the potential of hyperspectral imaging (HSI) in the monitoring of commercial consolidant products applied on wood samples. Poplar (Populus spp.) and walnut (Juglans Regia L.) were chosen for the consolidant application. Both traditional and innovative products were selected, based on acrylic, epoxy, and aliphatic compounds. Wood samples were stressed by freeze/thaw cycles in order to cause material degradation without the loss of wood components. Then the consolidant was applied under vacuum. The samples were finally artificially aged for 168 h in a solar box chamber. The samples were acquired in the short wave infrared (1000 to 2500 nm) range by SISUChema XL™ device (Specim, Finland) after 168 h of irradiation. As comparison, color measurement was also used as an economic, simple, and noninvasive technique to evaluate the deterioration and consolidation effects on wood. All data were then processed adopting a chemometric approach finalized to define correlation models, HSI based, between consolidating materials, wood species, and short-time aging effects.

On the origin of the marine zinc-silicon correlation

NASA Astrophysics Data System (ADS)

de Souza, Gregory F.; Khatiwala, Samar P.; Hain, Mathis P.; Little, Susan H.; Vance, Derek

2018-06-01

The close linear correlation between the distributions of dissolved zinc (Zn) and silicon (Si) in seawater has puzzled chemical oceanographers since its discovery almost forty years ago, due to the apparent lack of a mechanism for coupling these two nutrient elements. Recent research has shown that such a correlation can be produced in an ocean model without any explicit coupling between Zn and Si, via the export of Zn-rich biogenic particles in the Southern Ocean, consistent with the observation of elevated Zn quotas in Southern Ocean diatoms. Here, we investigate the physical and biological mechanisms by which Southern Ocean uptake and export control the large-scale marine Zn distribution, using suites of sensitivity simulations in an ocean general circulation model (OGCM) and a box-model ensemble. These simulations focus on the sensitivity of the Zn distribution to the stoichiometry of Zn uptake relative to phosphate (PO4), drawing directly on observations in culture. Our analysis reveals that OGCM model variants that produce a well-defined step between relatively constant, high Zn:PO4 uptake ratios in the Southern Ocean and low Zn:PO4 ratios at lower latitudes fare best in reproducing the marine Zn-Si correlation at both the global and the regional Southern Ocean scale, suggesting the presence of distinct Zn-biogeochemical regimes in the high- and low-latitude oceans that may relate to differences in physiology, ecology or (micro-)nutrient status. Furthermore, a study of the systematics of both the box model and the OGCM reveals that regional Southern Ocean Zn uptake exerts control over the global Zn distribution via its modulation of the biogeochemical characteristics of the surface Southern Ocean. Specifically, model variants with elevated Southern Ocean Zn:PO4 uptake ratios produce near-complete Zn depletion in the Si-poor surface Subantarctic Zone, where upper-ocean water masses with key roles in the global oceanic circulation are formed. By setting the main preformed covariation trend within the ocean interior, the subduction of these Zn- and Si-poor water masses produces a close correlation between the Zn and Si distributions that is barely altered by their differential remineralisation during low-latitude cycling. We speculate that analogous processes in the high-latitude oceans may operate for other trace metal micronutrients as well, splitting the ocean into two fundamentally different biogeochemical, and thus biogeographic, regimes.

The seasonal cycle of diabatic heat storage in the Pacific Ocean

USGS Publications Warehouse

White, Warren B.; Cayan, D.R.; Niiler, P.P.; Moisan, J.; Lagerloef, G.; Bonjean, F.; Legler, D.

2005-01-01

This study quantifies uncertainties in closing the seasonal cycle of diabatic heat storage (DHS) over the Pacific Ocean from 20??S to 60??N through the synthesis of World Ocean Circulation Experiment (WOCE) reanalysis products from 1993 to 1999. These products are DHS from Scripps Institution of Oceanography (SIO); near-surface geostrophic and Ekman currents from Earth and Space Research (ESR); and air-sea heat fluxes from Comprehensive Ocean-Atmosphere Data Set (COADS), National Centers for Environmental Prediction (NCEP), and European Center for Mid-Range Weather Forecasts (ECMWF). With these products, we compute residual heat budget components by differencing long-term monthly means from the long-term annual mean. This allows the seasonal cycle of the DHS tendency to be modeled. Everywhere latent heat flux residuals dominate sensible heat flux residuals, shortwave heat flux residuals dominate longwave heat flux residuals, and residual Ekman heat advection dominates residual geostrophic heat advection, with residual dissipation significant only in the Kuroshio-Oyashio current extension. The root-mean-square (RMS) of the differences between observed and model residual DHS tendencies (averaged over 10??latitude-by-20??longitude boxes) is <20 W m-2 in the interior ocean and <100 W m-2 in the Kuroshio-Oyashio current extension. This reveals that the residual DHS tendency is driven everywhere by some mix of residual latent heat flux, shortwave heat flux, and Ekman heat advection. Suppressing bias errors in residual air-sea turbulent heat fluxes and Ekman heat advection through minimization of the RMS differences reduces the latter to <10 W m-2 over the interior ocean and <25 W m -2 in the Kuroshio-Oyashio current extension. This reveals air-sea temperature and specific humidity differences from in situ surface marine weather observations to be a principal source of bias error, overestimated over most of ocean but underestimated near the Intertropical Convergence Zone. ?? 2005 Elsevier Ltd. All rights reserved.

Economics of a nest-box program for the conservation of an endangered species: a reappraisal

Treesearch

Daniel A. Spring; Michael Bevers; John O.S. Kennedy; Dan Harley

2001-01-01

An optimization model is developed to identify timing and placement strategies for the installation of nest boxes and the harvesting of timber to meet joint timber–wildlife objectives. Optimal management regimes are determined on the basis of their impacts on the local abundance of a threatened species and net present value (NPV) and are identified for a range of NPV...

S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA

PubMed Central

Fuchs, Ryan T.; Grundy, Frank J.; Henkin, Tina M.

2007-01-01

The SMK box is a conserved riboswitch motif found in the 5′ untranslated region of metK genes [encoding S-adenosylmethionine (SAM) synthetase] in lactic acid bacteria, including Enterococcus, Streptococcus, and Lactococcus sp. Previous studies showed that this RNA element binds SAM in vitro, and SAM binding causes a structural rearrangement that sequesters the Shine–Dalgarno (SD) sequence by pairing with an anti-SD (ASD) element. A model was proposed in which SAM binding inhibits metK translation by preventing binding of the ribosome to the SD region of the mRNA. In the current work, the addition of SAM was shown to inhibit binding of 30S ribosomal subunits to SMK box RNA; in contrast, the addition of S-adenosylhomocysteine (SAH) had no effect. A mutant RNA, which has a disrupted SD-ASD pairing, was defective in SAM binding and showed no reduction of ribosome binding in the presence of SAM, whereas a compensatory mutation that restored SD-ASD pairing restored the response to SAM. Primer extension inhibition assays provided further evidence for SD-ASD pairing in the presence of SAM. These results strongly support the model that SMK box translational repression operates through occlusion of the ribosome binding site and that SAM binding requires the SD-ASD pairing. PMID:17360376

Delivery of the high-mobility group box 1 box A peptide using heparin in the acute lung injury animal models.

PubMed

Song, Ji Hyun; Kim, Ji Yeon; Piao, Chunxian; Lee, Seonyeong; Kim, Bora; Song, Su Jeong; Choi, Joon Sig; Lee, Minhyung

2016-07-28

In this study, the efficacy of the high-mobility group box-1 box A (HMGB1A)/heparin complex was evaluated for the treatment of acute lung injury (ALI). HMGB1A is an antagonist against wild-type high-mobility group box-1 (wtHMGB1), a pro-inflammatory cytokine that is involved in ALIs. HMGB1A has positive charges and can be captured in the mucus layer after intratracheal administration. To enhance the delivery and therapeutic efficiency of HMGB1A, the HMGB1A/heparin complex was produced using electrostatic interactions, with the expectation that the nano-sized complex with a negative surface charge could efficiently penetrate the mucus layer. Additionally, heparin itself had an anti-inflammatory effect. Complex formation with HMGB1A and heparin was confirmed by atomic force microscopy. The particle size and surface charge of the HMGB1A/heparin complex at a 1:1 weight ratio were 113nm and -25mV, respectively. Intratracheal administration of the complex was performed into an ALI animal model. The results showed that the HMGB1A/heparin complex reduced pro-inflammatory cytokines, including tumor necrosis factor-α (TNF-α), interleukin-6 (IL-6), and IL-1β, more effectively than HMGB1A or heparin alone. Hematoxylin and eosin staining confirmed the decreased inflammatory reaction in the lungs after delivery of the HMGB1A/heparin complex. In conclusion, the HMGB1A/heparin complex might be useful to treat ALI. Copyright © 2016 Elsevier B.V. All rights reserved.

Analysis Monthly Import of Palm Oil Products Using Box-Jenkins Model

NASA Astrophysics Data System (ADS)

Ahmad, Nurul F. Y.; Khalid, Kamil; Saifullah Rusiman, Mohd; Ghazali Kamardan, M.; Roslan, Rozaini; Che-Him, Norziha

2018-04-01

The palm oil industry has been an important component of the national economy especially the agriculture sector. The aim of this study is to identify the pattern of import of palm oil products, to model the time series using Box-Jenkins model and to forecast the monthly import of palm oil products. The method approach is included in the statistical test for verifying the equivalence model and statistical measurement of three models, namely Autoregressive (AR) model, Moving Average (MA) model and Autoregressive Moving Average (ARMA) model. The model identification of all product import palm oil is different in which the AR(1) was found to be the best model for product import palm oil while MA(3) was found to be the best model for products import palm kernel oil. For the palm kernel, MA(4) was found to be the best model. The results forecast for the next four months for products import palm oil, palm kernel oil and palm kernel showed the most significant decrease compared to the actual data.

Thermal boundary layer due to sudden heating of fluid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kurkal, K.R.; Munukutla, S.

This paper proposes to solve computationally the heat-transfer problems (introduced by Munukutla and Venkataraman, 1988) related to a closed-cycle pulsed high-power laser flow loop. The continuity and the momentum equations as well as the unsteady energy equation are solved using the Keller-Box method. The solutions were compared with the steady-state solutions at large times, and the comparison was found to be excellent. Empirical formulas are proposed for calculating the time-dependent boundary-layer thickness and mass-heat transfer, that can be used by laser flow loop designers. 6 refs.

Thermal boundary layer due to sudden heating of fluid

NASA Astrophysics Data System (ADS)

Kurkal, K. R.; Munukutla, S.

1989-10-01

This paper proposes to solve computationally the heat-transfer problems (introduced by Munukutla and Venkataraman, 1988) related to a closed-cycle pulsed high-power laser flow loop. The continuity and the momentum equations as well as the unsteady energy equation are solved using the Keller-Box method. The solutions were compared with the steady-state solutions at large times, and the comparison was found to be excellent. Empirical formulas are proposed for calculating the time-dependent boundary-layer thickness and mass-heat transfer, that can be used by laser flow loop designers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Repins, Ingrid; Jordan, Dirk; Bosco, Nick

The proposed new IEC standard will address the test temperature requirements in IEC 61215 (module design), IEC 61730 (module safety), IEC 62790 (junction box safety) and IEC 62852 (connectors), and will provide guidelines to modify temperature limits in four existing standards to better describe module performance in hotter climates. This workshop includes four presentations: Special Testing for Modules Deployed in Hot Use Environments - Are We Doing This in a Low-Cost Way?, Experimental Evidence, Why the highest temperatures are the most stressful to PV modules during thermal cycling, and Safety Aspects for Modules Deployed in Hot Use Environments.