Reviews and syntheses: Systematic Earth observations for use in terrestrial carbon cycle data assimilation systems

NASA Astrophysics Data System (ADS)

Scholze, Marko; Buchwitz, Michael; Dorigo, Wouter; Guanter, Luis; Quegan, Shaun

2017-07-01

The global carbon cycle is an important component of the Earth system and it interacts with the hydrology, energy and nutrient cycles as well as ecosystem dynamics. A better understanding of the global carbon cycle is required for improved projections of climate change including corresponding changes in water and food resources and for the verification of measures to reduce anthropogenic greenhouse gas emissions. An improved understanding of the carbon cycle can be achieved by data assimilation systems, which integrate observations relevant to the carbon cycle into coupled carbon, water, energy and nutrient models. Hence, the ingredients for such systems are a carbon cycle model, an algorithm for the assimilation and systematic and well error-characterised observations relevant to the carbon cycle. Relevant observations for assimilation include various in situ measurements in the atmosphere (e.g. concentrations of CO2 and other gases) and on land (e.g. fluxes of carbon water and energy, carbon stocks) as well as remote sensing observations (e.g. atmospheric composition, vegetation and surface properties).We briefly review the different existing data assimilation techniques and contrast them to model benchmarking and evaluation efforts (which also rely on observations). A common requirement for all assimilation techniques is a full description of the observational data properties. Uncertainty estimates of the observations are as important as the observations themselves because they similarly determine the outcome of such assimilation systems. Hence, this article reviews the requirements of data assimilation systems on observations and provides a non-exhaustive overview of current observations and their uncertainties for use in terrestrial carbon cycle data assimilation. We report on progress since the review of model-data synthesis in terrestrial carbon observations by Raupach et al.(2005), emphasising the rapid advance in relevant space-based observations.

The Effect of Menstrual Cycle on Singing Voice: A Systematic Review.

PubMed

Gunjawate, Dhanshree R; Aithal, Venkataraja U; Ravi, Rohit; Venkatesh, Bhumika T

2017-03-01

Research has reported the difference in a woman's voice across the different stages of the menstrual cycle. A review of the studies in singers on the influence of menstruation on the singing voice will enable a better understanding of these changes. A systematic literature search was carried out on PubMed, CINAHL, Scopus, Cochrane, and regional electronic databases. The keywords "menstrual cycle," "voice change," and "singer" were used in different combinations. Only those articles that discussed the effect of menstrual cycle on the singing voice were included in the final review. Six studies in the English language were identified and included in the review. Hormonal variations occur to a great extent during menstrual cycle, and these variations can influence the voice of singers. A great variability was found in the included studies. There are limited studies that have been carried out exploring the relationship between menstrual cycle and the singing voice. Even though the studies included in the review point out toward the changes in the singing voice associated with menstrual cycle, there is a need for more studies to be carried out in diverse singing populations and in different outcome measures. Copyright © 2017 The Voice Foundation. Published by Elsevier Inc. All rights reserved.

Master and novice secondary science teachers' understandings and use of the learning cycle

NASA Astrophysics Data System (ADS)

Reap, Melanie Ann

2000-09-01

The learning cycle paradigm had been used in science classrooms for nearly four decades. This investigation seeks to reveal how the 1earning cycle, as originally designed, is currently understood and implemented by teachers in authentic classroom settings. The specific purposes of this study were: (1) to describe teachers who use the learning cycle and compare their understandings and perceptions of the learning cycle procedure in instruction; (2) to elicit novice and master teacher perspectives on their instruction and determine their perception of the process by which learning cycles are implemented in the science classroom; (3) to describe the context of science instruction in the novice and master teacher's classroom to ascertain how the teacher facilitates implementation of the learning cycle paradigm in their authentic classroom setting. The study used a learning cycle survey, interviews and classroom observations using the Learning Cycle Teacher Behavior Instruments and the Verbal Interaction Category System to explore these features of learning cycle instruction. The learning cycle survey was administered to a sample of teachers who use the learning cycle, including master and novice learning cycle teachers. One master and one novice learning cycle teacher were selected from this sample for further study. Analysis of the surveys showed no significant differences in master and novice teacher understandings of the learning cycle as assessed by the instrument. However, interviews and observations of the selected master and novice learning cycle teachers showed several differences in how the paradigm is understood and implemented in the classroom. The master learning cycle teacher showed a more developed teaching philosophy and had more engaged, extensive interactions with students. The novice learning cycle teacher held a more naive teaching philosophy and had fewer, less developed interactions with students. The most significant difference was seen in the use of questioning and discussion. The master teacher used diverse questioning techniques and guided students in discussion of their findings while the novice teachers used more rote response questions and controlled the discussion. The findings of this study have implications for science teacher education, especially in the preparation of teachers in science methods courses and student teaching, and in in-service education programs.

The GLOBE Carbon Cycle Project: Using a systems approach to understand carbon and the Earth's climate system

NASA Astrophysics Data System (ADS)

Silverberg, S. K.; Ollinger, S. V.; Martin, M. E.; Gengarelly, L. M.; Schloss, A. L.; Bourgeault, J. L.; Randolph, G.; Albrechtova, J.

2009-12-01

National Science Content Standards identify systems as an important unifying concept across the K-12 curriculum. While this standard exists, there is a recognized gap in the ability of students to use a systems thinking approach in their learning. In a similar vein, both popular media as well as some educational curricula move quickly through climate topics to carbon footprint analyses without ever addressing the nature of carbon or the carbon cycle. If students do not gain a concrete understanding of carbon’s role in climate and energy they will not be able to successfully tackle global problems and develop innovative solutions. By participating in the GLOBE Carbon Cycle project, students learn to use a systems thinking approach, while at the same time, gaining a foundation in the carbon cycle and it's relation to climate and energy. Here we present the GLOBE Carbon Cycle project and materials, which incorporate a diverse set of activities geared toward upper middle and high school students with a variety of learning styles. A global carbon cycle adventure story and game let students see the carbon cycle as a complete system, while introducing them to systems thinking concepts including reservoirs, fluxes and equilibrium. Classroom photosynthesis experiments and field measurements of schoolyard vegetation brings the global view to the local level. And the use of computer models at varying levels of complexity (effects on photosynthesis, biomass and carbon storage in global biomes, global carbon cycle) not only reinforces systems concepts and carbon content, but also introduces students to an important scientific tool necessary for understanding climate change.

Understanding Side Reactions in K–O 2 Batteries for Improved Cycle Life

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Xiaodi; Lau, Kah Chun; Yu, Mingzhe

2014-10-20

Superoxide based metal-air (or metal-oxygen) batteries, including potassium and sodium-oxygen batteries, have emerged as promising alternative chemistries in the metal-air battery family because of much improved round-trip efficiencies (>90%). In order to improve the cycle life of these batteries, it is crucial to understand and control the side reactions between the electrodes and the electrolyte. For potassium-oxygen batteries using ether-based electrolytes, the side reactions on the potassium anode have been identified as the main cause of battery failure. The composition of the side products formed on the anode, including some reaction intermediates, have been identified and quantified. Combined experimental studiesmore » and density functional theory (DFT) calculations show the side reactions are likely driven by the interaction of potassium with ether molecules and the crossover of oxygen from the cathode. To inhibit these side reactions, the incorporation of a polymeric potassium ion selective membrane (Nafion-K+) as a battery separator is demonstrated that significantly improves the battery cycle life. The K-O-2 battery with the Nafion-K+ separator can be discharged and charged for more than 40 cycles without increases in charging overpotential.« less

Towards better monitoring of technology critical elements in Europe: Coupling of natural and anthropogenic cycles.

PubMed

Nuss, Philip; Blengini, Gian Andrea

2018-02-01

The characterization of elemental cycles has a rich history in biogeochemistry. Well known examples include the global carbon cycle, or the cycles of the 'grand nutrients' nitrogen, phosphorus, and sulfur. More recently, efforts have increased to better understand the natural cycling of technology critical elements (TCEs), i.e. elements with a high supply risk and economic importance in the EU. On the other hand, tools such as material-flow analysis (MFA) can help to understand how substances and goods are transported and accumulated in man-made technological systems ('anthroposphere'). However, to date both biogeochemical cycles and MFA studies suffer from narrow system boundaries, failing to fully illustrate relative anthropogenic and natural flow magnitude and the degree to which human activity has perturbed the natural cycling of elements. We discuss important interconnections between natural and anthropogenic cycles and relevant EU raw material dossiers. Increased integration of both cycles could help to better capture the transport and fate of elements in nature including their environmental/human health impacts, highlight potential future material stocks in the anthroposphere (in-use stocks) and in nature (e.g., in soils, tailings, or mining wastes), and estimate anticipated emissions of TCEs to nature in the future (based on dynamic stock modeling). A preliminary assessment of natural versus anthropogenic element fluxes indicates that anthropogenic fluxes induced by the EU-28 of palladium, platinum, and antimony (as a result of materials uses) might be greater than the respective global natural fluxes. Increased combination of MFA and natural cycle data at EU level could help to derive more complete material cycles and initiate a discussion between the research communities of biogeochemists and material flow analysts to more holistically address the issues of sustainable resource management. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Microbially mediated transformations of phosphorus in the sea: new views of an old cycle.

PubMed

Karl, David M

2014-01-01

Phosphorus (P) is a required element for life. Its various chemical forms are found throughout the lithosphere and hydrosphere, where they are acted on by numerous abiotic and biotic processes collectively referred to as the P cycle. In the sea, microorganisms are primarily responsible for P assimilation and remineralization, including recently discovered P reduction-oxidation bioenergetic processes that add new complexity to the marine microbial P cycle. Human-induced enhancement of the global P cycle via mining of phosphate-bearing rock will likely influence the pace of P-cycle dynamics, especially in coastal marine habitats. The inextricable link between the P cycle and cycles of other bioelements predicts future impacts on, for example, nitrogen fixation and carbon dioxide sequestration. Additional laboratory and field research is required to build a comprehensive understanding of the marine microbial P cycle.

Medium- and Heavy-Duty Vehicle Duty Cycles for Electric Powertrains

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly, Kenneth; Bennion, Kevin; Miller, Eric

2016-03-02

NREL's Fleet Test and Evaluation group has extensive in-use vehicle data demonstrating the importance of understanding the vocational duty cycle for appropriate sizing of electric vehicle (EV) and power electronics components for medium- and heavy-duty EV applications. This presentation includes an overview of recent EV fleet evaluation projects that have valuable in-use data that can be leveraged for sub-system research, analysis, and validation. Peak power and power distribution data from in-field EVs are presented for four different vocations, including class 3 delivery vans, class 6 delivery trucks, class 8 transit buses, and class 8 port drayage trucks, demonstrating the impactsmore » of duty cycle on performance requirements.« less

Inhibition of E2F1 activity and cell cycle progression by arsenic via retinoblastoma protein.

PubMed

Sheldon, Lynn A

2017-01-01

The regulation of cell cycle progression by steroid hormones and growth factors is important for maintaining normal cellular processes including development and cell proliferation. Deregulated progression through the G1/S and G2/M cell cycle transitions can lead to uncontrolled cell proliferation and cancer. The transcription factor E2F1, a key cell cycle regulator, targets genes encoding proteins that regulate cell cycle progression through the G1/S transition as well as proteins important in DNA repair and apoptosis. E2F1 expression and activity is inhibited by inorganic arsenic (iAs) that has a dual role as a cancer therapeutic and as a toxin that leads to diseases including cancer. An understanding of what underlies this dichotomy will contribute to understanding how to use iAs as a more effective therapeutic and also how to treat cancers that iAs promotes. Here, we show that quiescent breast adenocarcinoma MCF-7 cells treated with 17-β estradiol (E2) progress through the cell cycle, but few cells treated with E2 + iAs progress from G1 into S-phase due to a block in cell cycle progression. Our data support a model in which iAs inhibits the dissociation of E2F1 from the tumor suppressor, retinoblastoma protein (pRB) due to changes in pRB phosphorylation which leads to decreased E2F1 transcriptional activity. These findings present an explanation for how iAs can disrupt cell cycle progression through E2F1-pRB and has implications for how iAs acts as a cancer therapeutic as well as how it may promote tumorigenesis through decreased DNA repair.

[Genome organization and life cycle of the hepatitis c virus].

PubMed

Kalinina, O V; Dmitriev, A V

2015-01-01

The review summarizes the current data about the hepatitis C viral genome and polyprotein organization. The functional role of the structural and non-structural viral proteins including their interaction with cellular regulatory proteins and cell structural elements is discussed. Specific peculiarities of the life cycle of the hepatitis C virus important for the understanding of the viral hepatitis C pathogenesis are summarized.

Analytically tractable climate-carbon cycle feedbacks under 21st century anthropogenic forcing

NASA Astrophysics Data System (ADS)

Lade, Steven J.; Donges, Jonathan F.; Fetzer, Ingo; Anderies, John M.; Beer, Christian; Cornell, Sarah E.; Gasser, Thomas; Norberg, Jon; Richardson, Katherine; Rockström, Johan; Steffen, Will

2018-05-01

Changes to climate-carbon cycle feedbacks may significantly affect the Earth system's response to greenhouse gas emissions. These feedbacks are usually analysed from numerical output of complex and arguably opaque Earth system models. Here, we construct a stylised global climate-carbon cycle model, test its output against comprehensive Earth system models, and investigate the strengths of its climate-carbon cycle feedbacks analytically. The analytical expressions we obtain aid understanding of carbon cycle feedbacks and the operation of the carbon cycle. Specific results include that different feedback formalisms measure fundamentally the same climate-carbon cycle processes; temperature dependence of the solubility pump, biological pump, and CO2 solubility all contribute approximately equally to the ocean climate-carbon feedback; and concentration-carbon feedbacks may be more sensitive to future climate change than climate-carbon feedbacks. Simple models such as that developed here also provide workbenches for simple but mechanistically based explorations of Earth system processes, such as interactions and feedbacks between the planetary boundaries, that are currently too uncertain to be included in comprehensive Earth system models.

Piecing together the fragments: Elucidating edge effects on forest carbon dynamics

NASA Astrophysics Data System (ADS)

Hutyra, L.; Smith, I. A.; Reinmann, A.; Marrs, J.; Thompson, J.

2017-12-01

Forest fragmentation is pervasive throughout the world's forests, impacting growing conditions and carbon dynamics through edge effects that produce gradients in microclimate, biogeochemistry, and stand structure. Despite the majority of the world's forests being <1km from an edge, our understanding of forest carbon dynamics is largely derived from intact forest systems. In the northeastern USA, we find that over 23% of the current forest area is just 30m from an agricultural or developed edge. Edge effects on the carbon cycle vary in their magnitude by biome, but current forest carbon accounting methods and ecosystem models largely do not include edge effects, highlighting an important gap in our understanding of the terrestrial carbon cycle. Characterizing the role of forest fragmentation in regional and global biogeochemical cycles necessitates advancing our understanding of how shifts in microenvironment at the forest edge interact with local prevailing drivers of global change and limitations to microbial activity and forest growth. This study synthesizes the literature related to edge effects and the carbon cycle, considering how fragmentation affects the growing conditions of the world's remaining forests based on risks and opportunities for forests near the edge.

Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review

USGS Publications Warehouse

Nimick, David A.; Gammons, Christopher H.; Parker, Stephen R.

2011-01-01

This review summarizes biogeochemical processes that operate on diel, or 24-h, time scales in streams and the changes in aqueous chemistry that are associated with these processes. Some biogeochemical processes, such as those producing diel cycles of dissolved O2 and pH, were the first to be studied, whereas processes producing diel concentration cycles of a broader spectrum of chemical species including dissolved gases, dissolved inorganic and organic carbon, trace elements, nutrients, stable isotopes, and suspended particles have received attention only more recently. Diel biogeochemical cycles are interrelated because the cyclical variations produced by one biogeochemical process commonly affect another. Thus, understanding biogeochemical cycling is essential not only for guiding collection and interpretation of water-quality data but also for geochemical and ecological studies of streams. Expanded knowledge of diel biogeochemical cycling will improve understanding of how natural aquatic environments function and thus lead to better predictions of how stream ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other factors.

Measurements and modeling of CO 2 concentration and isotopes to improve process-level understanding of Arctic and boreal carbon cycling. Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keeling, Ralph F.

The major goal of this project was to improve understanding of processes that control the exchanges of CO 2 between the atmosphere and the land biosphere on decadal and longer time scales. The approach involves measuring the changes in atmospheric CO 2 concentration and the isotopes of CO 2 ( 13C/ 12C and 18O/ 16O) at background stations and uses these and other datasets to challenge and improve numerical models of the earth system. The project particularly emphasized the use of these data to improve understanding of changes occurring in boreal and arctic ecosystems over the past 50 years andmore » to seek from these data improved understanding of large-scale processes impacting carbon cycling, such as the responses to warming, CO 2 fertilization, and disturbance. The project also led to advances in the understanding of changes in water-use efficiency of land ecosystems globally based on trends in 13C/ 12C. The core element of this project was providing partial support for continuing measurements of CO 2 concentrations and isotopes from the Scripps CO 2 program, initiated by C. D. Keeling in the 1960s. The measurements included analysis of flasks collected at an array of ten stations distributed from the Arctic to the Antarctic. The project also supported modeling studies and interpretive work to help understand the origins of the large ~50% increase in the amplitude of the atmospheric CO 2 cycle detected at high northern latitudes between 1960 and present and to understand the long-term trend in carbon 13C/ 12C of CO 2. The seasonal cycle work was advanced through collaborations with colleagues at MPI Jena and Imperial College« less

The Impact of Different Instructional Strategies on Students' Understanding about the Cell Cycle in a General Education Biology Course

NASA Astrophysics Data System (ADS)

Krishnamurthy, Sanjana

This study investigated the impact of different instructional strategies on students' understanding about the cell cycle in a general education biology course. Although several studies have documented gains in students' cell cycle understanding after instruction, these studies generally use only one instructional method, often without a comparison group. The goal of this study was to learn more about students' misconceptions about the cell cycle and how those ideas change after three different evidence-based learning experiences in undergraduate general education. Undergraduate students in six laboratory sections (n = 24; N = 144) in a large public institution in the western United States were surveyed pre- and post-instruction using a 14-item valid and reliable survey of cell cycle knowledge. Cronbach's alpha for the standard scoring convention was 0.264 and for the alternate scoring convention was 0.360, documenting serious problems with inconsistent validity and reliability of the survey. Operating as though the findings are at least a proxy for actual cell cycle knowledge, score comparisons by groups of interest were explored, including pre- and post-instruction differences among demographic groups of interest and three instructional settings: a bead modeling activity, a role-playing game, and 5E instructional strategy. No significant differences were found across groups of interest or by strategy, but some significant item-level differences were found. Implications and discussion of these shifts is noted in lieu of the literature.

A Two Dimensional Prediction of Solar Cycle 25

NASA Astrophysics Data System (ADS)

Munoz-Jaramillo, A.; Martens, P. C.

2017-12-01

To this date solar cycle most cycle predictions have focused on the forecast of solar cycle amplitude and cycle bell-curve shape. However, recent intriguing observational results suggest that all solar cycles follow the same longitudinal path regardless of their amplitude, and have a very similar decay once they reach a sufficient level of maturity. Cast in the light of our current understanding, these results suggest that the toroidal fields inside the Sun are subject to a very high turbulent diffusivity (of the order of magnitude of mixing-length estimates), and their equatorward propagation is driven by a steady meridional flow. Assuming this is the case, we will revisit the relationship between the polar fields at minimum and the amplitude of the next cycle and deliver a new generation of polar-field based predictions that include the depth of the minimum, as well as the latitude and time of the first active regions of solar cycle 25.

Evaluating the remote sensing and inventory-based estimation of biomass in the western Carpathians

Treesearch

Magdalena Main-Knorn; Gretchen G. Moisen; Sean P. Healey; William S. Keeton; Elizabeth A. Freeman; Patrick Hostert

2011-01-01

Understanding the potential of forest ecosystems as global carbon sinks requires a thorough knowledge of forest carbon dynamics, including both sequestration and fluxes among multiple pools. The accurate quantification of biomass is important to better understand forest productivity and carbon cycling dynamics. Stand-based inventories (SBIs) are widely used for...

Island Watershed Activity.

ERIC Educational Resources Information Center

Benson, Rod

2003-01-01

Describes a 90-minute "Island Watershed" activity to help earth science students understand the concept of the water cycle. Introduces a surface waters unit appropriate for students in grades 7-10. Includes watershed project guidelines. (Author/KHR)

Use It or Lose It: Advances in Our Understanding of Terrestrial Nitrogen Retention and Loss (Invited)

NASA Astrophysics Data System (ADS)

Silver, W. L.; Yang, W. H.

2013-12-01

Understanding of the terrestrial nitrogen (N) cycle has grown over the last decade to include a variety of pathways that have the potential to either retain N in the ecosystem or result in losses to the atmosphere or groundwater. Early work has described the mechanics of these N transformations, but the relevance of these processes to ecosystem, regional, or global scale N cycling has not been well quantified. In this study, we review advances in our understanding of the terrestrial N cycle, and focus on three pathways with particular relevance to N retention and loss: dissimilatory nitrate and nitrite reduction to ammonium (DNRA), anaerobic ammonium oxidation (annamox), and anaerobic ammonium oxidation coupled to iron reduction (Feammox). We discuss the role of these processes in the microbial N economy (sensu Burgin et al. 2011) of the terrestrial N cycle, the environmental and ecological constraints, and relationships with other key biogeochemical cycles. We also discuss recent advances in analytical approaches that have improved our ability to detect these and related N fluxes in terrestrial ecosystems. Finally, we present a scaling exercise that identifies the potential importance of these pathways for N retention and loss across a range of spatial and temporal scales, and discuss their significance in terms of N limitation to net primary productivity, N leaching to groundwater, and the release of reactive N gases to the atmosphere.

25 Years of Cell Cycle Research: What's Ahead?

PubMed

Gutierrez, Crisanto

2016-10-01

We have reached 25 years since the first molecular approaches to plant cell cycle. Fortunately, we have witnessed an enormous advance in this field that has benefited from using complementary approaches including molecular, cellular, genetic and genomic resources. These studies have also branched and demonstrated the functional relevance of cell cycle regulators for virtually every aspect of plant life. The question is - where are we heading? I review here the latest developments in the field and briefly elaborate on how new technological advances should contribute to novel approaches that will benefit the plant cell cycle field. Understanding how the cell division cycle is integrated at the organismal level is perhaps one of the major challenges. Copyright © 2016 Elsevier Ltd. All rights reserved.

Understanding Single Adulthood.

ERIC Educational Resources Information Center

Stein, Peter J.

The life styles and life chances of the unmarried include elements of choices. Singles may be grouped and characterized according to whether their status may be considered stable or temporary. A life cycle, or continuum model of singlehood is reviewed, including its different factors, or phases. A new model for singles is proposed--a life spiral…

Quantitative RT-PCR Comparison of the Urea and Nitric Oxide Cycle Gene Transcripts in Adult Human Tissues

PubMed Central

Neill, Meaghan Anne; Aschner, Judy; Barr, Frederick; Summar, Marshall L.

2009-01-01

The urea cycle and nitric oxide cycle play significant roles in complex biochemical and physiologic reactions. These cycles have distinct biochemical goals including the clearance of waste nitrogen; the production of the intermediates ornithine, citrulline, and arginine for the urea cycle; and the production of nitric oxide for the nitric oxide pathway. Despite their disparate functions, the two pathways share two enzymes, argininosuccinic acid synthase and argininosuccinic acid lyase, and a transporter, citrin. Studying the gene expression of these enzymes is paramount in understanding these complex biochemical pathways. Here, we examine the expression of genes involved in the urea cycle and the nitric oxide cycle in a panel of eleven different tissue samples obtained from individual adults without known inborn errors of metabolism. In this study, the pattern of co-expressed enzymes provides a global view of the metabolic activity of the urea and nitric oxide cycles in human tissues. Our results show that these transcripts are differentially expressed in different tissues. The pattern of co-expressed enzymes provides a global view of the metabolic activity of the urea and nitric oxide cycles in human tissues. Using the co-expression profiles, we discovered that the combination of expression of enzyme transcripts as detected in our study, might serve to fulfill specific physiologic function(s) in tissue including urea production/nitrogen removal, arginine/citrulline production, nitric oxide production, and ornithine production. Our study reveals the importance of studying not only the expression profile of an enzyme of interest, but also studying the expression profiles of the other enzymes involved in a particular pathway so as to better understand the context of expression. The tissue patterns we observed highlight the variety of important functions they conduct and provide insight into many of the clinical observations from their disruption. PMID:19345634

CO2 cycle

USGS Publications Warehouse

Titus, Timothy N.; Byrne, Shane; Colaprete, Anthony; Forget, Francois; Michaels, Timothy I.; Prettyman, Thomas H.

2017-01-01

This chapter discusses the use of models, observations, and laboratory experiments to understand the cycling of CO2 between the atmosphere and seasonal Martian polar caps. This cycle is primarily controlled by the polar heat budget, and thus the emphasis here is on its components, including solar and infrared radiation, the effect of clouds (water- and CO2-ice), atmospheric transport, and subsurface heat conduction. There is a discussion about cap properties including growth and regression rates, albedos and emissivities, grain sizes and dust and/or water-ice contamination, and curious features like cold gas jets and araneiform (spider-shaped) terrain. The nature of the residual south polar cap is discussed as well as its long-term stability and ability to buffer atmospheric pressures. There is also a discussion of the consequences of the CO2 cycle as revealed by the non-condensable gas enrichment observed by Odyssey and modeled by various groups.

The Dynamics of Flowing Waters.

ERIC Educational Resources Information Center

Mattingly, Rosanna L.

1987-01-01

Describes a series of activities designed to help students understand the dynamics of flowing water. Includes investigations into determining water discharge, calculating variable velocities, utilizing flood formulas, graphing stream profiles, and learning about the water cycle. (TW)

Helping Young Children to See What Is Relevant and Why: Supporting Cognitive Change in Earth Science Using Analogy. Research Report

ERIC Educational Resources Information Center

Blake, Anthony

2004-01-01

This experimental study explores how 60 primary-age children's (9-11 years old) understanding of rocks was effected by instruction that used the conceptual structure of the rock cycle together with the analogy of aluminium can recycling. Using a combination of probes into children's understanding, including concept maps and semi-structured…

Software engineering and the role of Ada: Executive seminar

NASA Technical Reports Server (NTRS)

Freedman, Glenn B.

1987-01-01

The objective was to introduce the basic terminology and concepts of software engineering and Ada. The life cycle model is reviewed. The application of the goals and principles of software engineering is applied. An introductory understanding of the features of the Ada language is gained. Topics addressed include: the software crises; the mandate of the Space Station Program; software life cycle model; software engineering; and Ada under the software engineering umbrella.

Global water cycle

NASA Technical Reports Server (NTRS)

Robertson, Franklin; Goodman, Steven J.; Christy, John R.; Fitzjarrald, Daniel E.; Chou, Shi-Hung; Crosson, William; Wang, Shouping; Ramirez, Jorge

1993-01-01

This research is the MSFC component of a joint MSFC/Pennsylvania State University Eos Interdisciplinary Investigation on the global water cycle extension across the earth sciences. The primary long-term objective of this investigation is to determine the scope and interactions of the global water cycle with all components of the Earth system and to understand how it stimulates and regulates change on both global and regional scales. Significant accomplishments in the past year are presented and include the following: (1) water vapor variability; (2) multi-phase water analysis; (3) global modeling; and (4) optimal precipitation and stream flow analysis and hydrologic processes.

Oestrogen and progesterone action on endometrium: a translational approach to understanding endometrial receptivity

PubMed Central

Young, Steven L.

2013-01-01

Embryo attachment and implantation is critical to successful reproduction of all eutherian mammals, including humans; a better understanding of these processes could lead to improved infertility treatments and novel contraceptive methods. Experience with assisted reproduction, especially oocyte donation cycles, has established that despite the diverse set of hormones produced by the ovary in a cycle-dependent fashion, the sequential actions of only two of them, oestrogen and progesterone, are sufficient to prepare a highly receptive endometrium in humans. Further investigation on the endometrial actions of these two hormones is currently providing significant insight into the implantation process in women, strongly suggesting that an abnormal response to progesterone underlies infertility in some patients. PMID:23933037

The NASA Energy and Water Cycle Extreme (NEWSE) Integration Project

NASA Technical Reports Server (NTRS)

House, P. R.; Lapenta, W.; Schiffer, R.

2008-01-01

Skillful predictions of water and energy cycle extremes (flood and drought) are elusive. To better understand the mechanisms responsible for water and energy extremes, and to make decisive progress in predicting these extremes, the collaborative NASA Energy and Water cycle Extremes (NEWSE) Integration Project, is studying these extremes in the U.S. Southern Great Plains (SGP) during 2006-2007, including their relationships with continental and global scale processes, and assessment of their predictability on multiple space and time scales. It is our hypothesis that an integrative analysis of observed extremes which reflects the current understanding of the role of SST and soil moisture variability influences on atmospheric heating and forcing of planetary waves, incorporating recently available global and regional hydro- meteorological datasets (i.e., precipitation, water vapor, clouds, etc.) in conjunction with advances in data assimilation, can lead to new insights into the factors that lead to persistent drought and flooding. We will show initial results of this project, whose goals are to provide an improved definition, attribution and prediction on sub-seasonal to interannual time scales, improved understanding of the mechanisms of decadal drought and its predictability, including the impacts of SST variability and deep soil moisture variability, and improved monitoring/attributions, with transition to applications; a bridging of the gap between hydrological forecasts and stakeholders (utilization of probabilistic forecasts, education, forecast interpretation for different sectors, assessment of uncertainties for different sectors, etc.).

Simulation of the M13 life cycle I: Assembly of a genetically-structured deterministic chemical kinetic simulation.

PubMed

Smeal, Steven W; Schmitt, Margaret A; Pereira, Ronnie Rodrigues; Prasad, Ashok; Fisk, John D

2017-01-01

To expand the quantitative, systems level understanding and foster the expansion of the biotechnological applications of the filamentous bacteriophage M13, we have unified the accumulated quantitative information on M13 biology into a genetically-structured, experimentally-based computational simulation of the entire phage life cycle. The deterministic chemical kinetic simulation explicitly includes the molecular details of DNA replication, mRNA transcription, protein translation and particle assembly, as well as the competing protein-protein and protein-nucleic acid interactions that control the timing and extent of phage production. The simulation reproduces the holistic behavior of M13, closely matching experimentally reported values of the intracellular levels of phage species and the timing of events in the M13 life cycle. The computational model provides a quantitative description of phage biology, highlights gaps in the present understanding of M13, and offers a framework for exploring alternative mechanisms of regulation in the context of the complete M13 life cycle. Copyright © 2016 Elsevier Inc. All rights reserved.

Geothermal Water Use: Life Cycle Water Consumption, Water Resource Assessment, and Water Policy Framework

DOE Data Explorer

Schroeder, Jenna N.

2014-06-10

This report examines life cycle water consumption for various geothermal technologies to better understand factors that affect water consumption across the life cycle (e.g., power plant cooling, belowground fluid losses) and to assess the potential water challenges that future geothermal power generation projects may face. Previous reports in this series quantified the life cycle freshwater requirements of geothermal power-generating systems, explored operational and environmental concerns related to the geochemical composition of geothermal fluids, and assessed future water demand by geothermal power plants according to growth projections for the industry. This report seeks to extend those analyses by including EGS flash, both as part of the life cycle analysis and water resource assessment. A regional water resource assessment based upon the life cycle results is also presented. Finally, the legal framework of water with respect to geothermal resources in the states with active geothermal development is also analyzed.

The Solar Cycle and, How Do We Know What We Know?

NASA Technical Reports Server (NTRS)

Adams, Mitzi

2013-01-01

Through the use of observations, mathematics, mathematical tools (such as graphs), inference, testing, and prediction we have gathered evidence that there are sunspots, a solar cycle, and have begun to understand more about our star, the Sun. We are making progress in understanding the cause of the solar cycle. We expect solar cycle 24 to peak soon. Cycle 24 will be the smallest cycle in 100 years.

Understanding the Carbon Cycle : A Jigsaw Approach

NASA Astrophysics Data System (ADS)

Hastings, D. W.

2006-12-01

A thorough understanding of the carbon cycle is fundamental to understanding the eventual fate of CO2. To achieve this, students must understand individual processes, such as photosynthesis and respiration, as well as an integrated knowledge of how these processes relate to each other. In this "jigsaw" exercise, each student is assigned one five fundamental geochemical processes in the short- term carbon cycle to research and fully understand. In class, students first meet with others who have studied the same process to strengthen and deepen their understanding of this process. They then form teams of five students and explain to other students their particular process. In exchange, other students explain the other aspects of the carbon cycle. At the end of class all students will know about each of the five processes, and thus develop an integrated understanding of the entire carbon cycle. This approach is an efficient method for students to learn the material. As in a jigsaw puzzle, each student's part is essential for the full understanding of the carbon cycle. Since each student's part is essential, then each student is essential, which is what makes this strategy effective The jigsaw approach encourages listening, engagement, and collaboration by giving each member of the group an essential part to play in the academic activity.

The global sulfur cycle

NASA Technical Reports Server (NTRS)

Sagan, D. (Editor)

1985-01-01

The results of the planetary biology microbial ecology's 1984 Summer Research Program, which examined various aspects of the global sulfur cycle are summarized. Ways in which sulfur flows through the many living and chemical species that inhabit the surface of the Earth were investigated. Major topics studied include: (1) sulfur cycling and metabolism of phototropic and filamentous sulfur bacteria; (2) sulfur reduction in sediments of marine and evaporite environments; (3) recent cyanobacterial mats; (4) microanalysis of community metabolism in proximity to the photic zone in potential stromatolites; and (5) formation and activity of microbial biofilms on metal sulfides and other mineral surfaces. Relationships between the global sulfur cycle and the understanding of the early evolution of the Earth and biosphere and current processes that affect global habitability are stressed.

Molecular Basis of Microbial One-Carbon Metabolism 2008 Gordon Research Conference (July 20-25, 2008)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephen W. Ragsdale

2009-08-12

One-carbon (C-1) compounds play a central role in microbial metabolism. C-1 compounds include methane, carbon monoxide, CO2, and methanol as well as coenzyme-bound one-carbon compounds (methyl-B12, CH3-H4folate, etc). Such compounds are of broad global importance because several C-1 compounds (e.g., CH4) are important energy sources, some (e.g., CO2 and CH4) are potent greenhouse gases, and others (e.g., CH2Cl2) are xenobiotics. They are central in pathways of energy metabolism and carbon fixation by microbes and many are of industrial interest. Research on the pathways of one-carbon metabolism has added greatly to our understanding of evolution, structural biology, enzyme mechanisms, gene regulation,more » ecology, and applied biology. The 2008 meeting will include recent important findings in the following areas: (a) genomics, metagenomics, and proteomic studies that have expanded our understanding of autotrophy and C-1 metabolism and the evolution of these pathways; (b) redox regulation of carbon cycles and the interrelationship between the carbon cycle and other biogeochemical cycles (sulfur, nitrogen, oxygen); (c) novel pathways for carbon assimilation; (d) biotechnology related to C-1 metabolism; (e) novel enzyme mechanisms including channeling of C-1 intermediates during metabolism; and (f) the relationship between metal homeostasis and the global carbon cycle. The conference has a diverse and gender-balanced slate of speakers and session leaders. The wide variety of disciplines brought to the study of C-1 metabolism make the field an excellent one in which to train young researchers.« less

The Solar Wind Source Cycle: Relationship to Dynamo Behavior

NASA Astrophysics Data System (ADS)

Luhmann, J. G.; Li, Y.; Lee, C. O.; Jian, L. K.; Petrie, G. J. D.; Arge, C. N.

2017-12-01

Solar cycle trends of interest include the evolving properties of the solar wind, the heliospheric medium through which the Sun's plasmas and fields interact with Earth and the planets -including the evolution of CME/ICMEs enroute. Solar wind sources include the coronal holes-the open field regions that constantly evolve with solar magnetic fields as the cycle progresses, and the streamers between them. The recent cycle has been notably important in demonstrating that not all solar cycles are alike when it comes to contributions from these sources, including in the case of ecliptic solar wind. In particular, it has modified our appreciation of the low latitude coronal hole and streamer sources because of their relative prevalence. One way to understand the basic relationship between these source differences and what is happening inside the Sun and on its surface is to use observation-based models like the PFSS model to evaluate the evolution of the coronal field geometry. Although the accuracy of these models is compromised around solar maximum by lack of global surface field information and the sometimes non-potential evolution of the field related to more frequent and widespread emergence of active regions, they still approximate the character of the coronal field state. We use these models to compare the inferred recent cycle coronal holes and streamer belt sources of solar wind with past cycle counterparts. The results illustrate how (still) hemispherically asymmetric weak polar fields maintain a complex mix of low-to-mid latitude solar wind sources throughout the latest cycle, with a related marked asymmetry in the hemispheric distribution of the ecliptic wind sources. This is likely to be repeated until the polar field strength significantly increases relative to the fields at low latitudes, and the latter symmetrize.

ENVIRONMENTAL CHAMBER STUDIES OF MERCURY REACTIONS IN THE ATMOSPHERE

EPA Science Inventory

Mercury is released into the environment through both natural and anthropogenic pathways. The cycling and fate of mercury in atmospheric, soil, and water ecosystems is impacted by various factors, including chemical transformation and transport. An understanding of these proces...

The use of remotely sensed soil moisture data in large-scale models of the hydrological cycle

NASA Technical Reports Server (NTRS)

Salomonson, V. V.; Gurney, R. J.; Schmugge, T. J.

1985-01-01

Manabe (1982) has reviewed numerical simulations of the atmosphere which provided a framework within which an examination of the dynamics of the hydrological cycle could be conducted. It was found that the climate is sensitive to soil moisture variability in space and time. The challenge arises now to improve the observations of soil moisture so as to provide up-dated boundary condition inputs to large scale models including the hydrological cycle. Attention is given to details regarding the significance of understanding soil moisture variations, soil moisture estimation using remote sensing, and energy and moisture balance modeling.

Evaluation of 20 Ah Li Ion Cells

NASA Technical Reports Server (NTRS)

Smart, Marshall; Ratnakumar, B. V.; Huang, Charles K.; Surampudi, S.; Hill, Carole; Radzykewycz, Dan T.; Marsh, Richard A.

1998-01-01

Lithium ion cells of 20 Ah capacity were fabricated by Bluestar Advanced Technology Corporation, Canada under a developmental contract from US Air Force. In this paper, we report our studies on the evaluation of these cells under various test conditions. These include generic test conditions such as discharges and charges at different temperatures to understand the rate-limiting processes in the discharge/charge processes as a function of temperature, and cycle life under standard cycling conditions (100% DOD) at ambient temperature. In addition, tests are being done to ascertain the performance of the cells in the Mars 2001 Lander application, which includes pulse testing of the cells at 60 A and 40 A loads for 100 mS and 1 min., respectively at different states of charge and temperatures, and cycling at low temperature at partial depths of discharge.

The menstrual cycle and the skin.

PubMed

Raghunath, R S; Venables, Z C; Millington, G W M

2015-03-01

Perimenstrual exacerbations of dermatoses are commonly recognized, yet our knowledge of the underlying pathophysiological mechanisms remains imperfect. Research into the effects of oestrogen on the skin has provided evidence to suggest that oestrogen is associated with increases in skin thickness and dermal water content, improved barrier function, and enhanced wound healing. Research into the effects of progesterone suggests that the presence of various dermatoses correlates with peak levels of progesterone. Dermatoses that are exacerbated perimenstrually include acne, psoriasis, atopic eczema and irritant dermatitis, and possibly also erythema multiforme. Exacerbations occur at the peak levels of progesterone in the menstrual cycle. Underlying mechanisms include reduced immune and barrier functions as a result of cyclical fluctuations in oestrogen and/or progesterone. Autoimmune progesterone and oestrogen dermatitis are the best-characterized examples of perimenstrual cutaneous reactions to hormones produced during the menstrual cycle. In this review, we describe the current understanding of the menstrual cycle, and its effect on the skin and cutaneous disorders. © 2015 British Association of Dermatologists.

Female Couples Undergoing IVF with Partner Eggs (Co-IVF): Pathways to Parenthood.

PubMed

Yeshua, Arielle; Lee, Joseph A; Witkin, Georgia; Copperman, Alan B

2015-06-01

Egg sharing in female couples can be used to allow dual participation of female couples in the pregnancy process. The oocyte donor-partner provides the eggs and the recipient partner provides the uterine environment for gestation. We present descriptive data of our experience in female couples to establish a better understanding of utilization of co-in vitro fertilization (Co-IVF) for social and medical reasons. Female couples enrolled in a third party reproduction program that engaged in at least one Co-IVF cycle were included. Previous assisted reproductive technology (ART) cycle data, Co-IVF cycle information and pregnancy outcomes were evaluated. Female couples (n=21) who participated in Co-IVF cycles were analyzed. Over time, 16/21 (76%) of couples achieved at least one pregnancy, 9 (42%) couples delivered, and there are another 5 (23%) ongoing pregnancies. Our analysis presents descriptive data and sheds realistic expectations for Co-IVF couples. Co-IVF cycles can result in a shared experience with regard to the process of creating a family, while preserving a female couple's desire for dual partner participation in the gestational process. We encourage centers treating female couples to consider departing from traditional nomenclature of "donors" and "recipients" and adopting the nomenclature "Co-IVF" to describe the modern understanding of the shared experience. Even if female couples have experienced prior unsuccessful cycles, couples ultimately retain an excellent prognosis for reproductive success using Co-IVF.

A Guide to Understanding Security Testing and Test Documentation in Trusted Systems, Version 1

DTIC Science & Technology

1993-07-01

necessary to allow the testing of access with all other types of objects. The above test data also provide partial coverage because they de not include...two types of assurance are needed. They are life-cycle assurance and operational assurance. "Life-cycle assurance refers to steps taken by an...procedures depends to a certain extent on the nature of the TCB interface under test. For example, for most TCB-primitive tests that require the same type

Battery Electrode Materials with High Cycle Lifetimes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prof. Brent Fultz

2001-06-29

In an effort to understand the capacity fade of nickel-metal hydride (Ni-MH) batteries, we performed a systematic study of the effects of solute additions on the cycle life of metal hydride electrodes. We also performed a series of measurements on hydrogen absorption capacities of novel carbon and graphite-based materials including graphite nanofibers and single-walled carbon nanotubes. Towards the end of this project we turned our attention to work on Li-ion cells with a focus on anode materials.

Evolution of Our Understanding of the Solar Dynamo During Solar Cycle 24

NASA Astrophysics Data System (ADS)

Munoz-Jaramillo, A.

2017-12-01

Solar cycle 24 has been an exciting cycle for our understanding of the solar dynamo: 1. It was the first cycle for which dynamo based predictions were ever used teaching us valuable lessons. 2. It has given us the opportunity to observe a deep minimum and a weak cycle with a high level of of observational detail . 3. It is full of breaktrhoughs in anelastic MHD dynamo simulations (regular cycles, buoyant flux-tubes, mounder-like events). 4. It has seen the creation of bridges between the kinematic flux-transport and anelastic MHD approaches. 5. It has ushered a new generation of realistic surface flux-transport simulations 6. We have achieved significant observational progress in our understanding of solar cycle propagation. The objective of this talk is to highlight some of the most important results, giving special emphasis on what they have taught us about solar cycle predictability.

Anthropogenic and natural disturbances of carbon, nitrogen and water cycles and their global effects

NASA Astrophysics Data System (ADS)

Tian, H.; Melillo, J.; Virji, H.; Fu, C.; Dickinson, R.; Running, S.; Liu, J.; Wang, Q.; Reilly, J.

2006-05-01

Monsoon Asia includes the Indian sub-continent, Southeast Asia and East Asia. Monsoon Asia is home to more than one-half of the world population, but the total land area in this region is only about 16% of earth's land surface. This region is covered by a range of ecosystems from tropical forests in Southeast Asia to boreal forests in the northern Asia, and from temperate forests in Eastern Asia to deserts in western Asia and tundra in the Himalayan Mountains. These ecosystems account for about one fourth of the potential global terrestrial net primary productivity and for a similar fraction of the carbon stored in land ecosystems. The structure and functioning of these ecosystems are being affected by a complex set of multiple human-induced stresses including air pollution and land transformation. The unprecedented combination of economic and population growth has led to a dramatic land transformation and air pollution across monsoon Asia. The large-scale land transformation and air pollution have important implications for the cycles of carbon, nitrogen and water at regional and global scales. Clearly, monsoon Asia is of critical importance to the understanding of how changing climates and human impacts interact to influence the structure and functioning of ecosystems and the biosphere. In this study, we have reviewed recent advances in the understanding of human-induced changes in biogeochemical and hydrological cycles in Monsoon Asia, including the human-monsoon interactions and the linkage of Asian monsoon to global climate. Finally we have discussed gaps and limitations in existing information that need to be investigated in the future to improve our understanding of human/nature dynamics in monsoon Asia and its linkage to the Earth system.

Using MGS TES Data to Understand Water Cycling in Mars' North Polar Region

NASA Technical Reports Server (NTRS)

Tamppari, L. K.; Hale, A. S.; Bass, D. S.; Smith, M. D.

2003-01-01

The Martian water cycle is one of the three annual cycles on Mars, dust and CO2 being the other two. Despite the fact that detailed spacecraft data, including global and annual coverage in a variety of wavelengths, have been taken of Mars spanning more than 25 years, there are many outstanding questions regarding the water cycle. There is very little exposed water on Mars today, in either the atmosphere or on the surface although there is geological evidence of catastrophic flooding and continuously running water in past epochs in Mars' history as well as recent (within about 10,000 years ago) evidence for running water in the form of gullies. While there is little water in the atmosphere, water- ice clouds do form and produce seasonal clouds caused by general circulation and by storms. These clouds may in turn be controlling the cycling of the water within the general circulation.

Phosphatidylcholine and the CDP-Choline Cycle

PubMed Central

Fagone, Paolo; Jackowski, Suzanne

2012-01-01

The CDP-choline pathway of phosphatidylcholine (PtdCho) biosynthesis was first described more than 50 years ago. Investigation of the CDP-choline pathway in yeast provides a basis for understanding the CDP-choline pathway in mammals. PtdCho is considered as an intermediate in a cycle of synthesis and degradation, and the activity of a CDP-choline cycle is linked to subcellular membrane lipid movement. The components of the mammalian CDP-choline pathway include choline transport, choline kinase, phosphocholine cytidylyltransferase, and choline phosphotransferase activities. The protein isoforms and biochemical mechanisms of regulation of the pathway enzymes are related to their cell and tissue-specific functions. Regulated PtdCho turnover mediated by phospholipases or neuropathy target esterase participates in the mammalian CDP-choline cycle. Knockout mouse models define the biological functions of the CDP-choline cycle in mammalian cells and tissues. This article is part of a Special Issue entitled Phospholipids and Phospholipid Metabolism. PMID:23010477

The changing global carbon cycle: Linking plant-soil carbon dynamics to global consequences

USGS Publications Warehouse

Chapin, F. S.; McFarland, J.; McGuire, David A.; Euskirchen, E.S.; Ruess, Roger W.; Kielland, K.

2009-01-01

Synthesis. Current climate systems models that include only NPP and HR are inadequate under conditions of rapid change. Many of the recent advances in biogeochemical understanding are sufficiently mature to substantially improve representation of ecosystem C dynamics in these models.

Comprehensive national assessment of the sustainability of beef production

USDA-ARS?s Scientific Manuscript database

A national assessment is being conducted by the National Cattlemen’s Beef Association, a contractor to the beef checkoff, to develop better scientific understanding of the sustainability of beef. This includes a life cycle assessment (LCA) of greenhouse gas emissions along with other environmental, ...

Crystal structure and texture changes during thermal cycling of TATB

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vogel, Sven C.; Yeager, John David

2015-02-20

Goals: Understand crystal structure and micro-structure changes during thermal cycling, understand reasons for ratcheting of TATB during thermal cycling, and Support of B61 LEP. Deliverables achieved: Completed in situ thermal cycling of loose powder and pressed pellet TATB on HIPPO, Quantified preferred orientation of pressed pellet, and quantified relative change of each of the six lattic parameters.

Genome-to-Watershed Predictive Understanding of Terrestrial Environments

NASA Astrophysics Data System (ADS)

Hubbard, S. S.; Agarwal, D.; Banfield, J. F.; Beller, H. R.; Brodie, E.; Long, P.; Nico, P. S.; Steefel, C. I.; Tokunaga, T. K.; Williams, K. H.

2014-12-01

Although terrestrial environments play a critical role in cycling water, greenhouse gasses, and other life-critical elements, the complexity of interactions among component microbes, plants, minerals, migrating fluids and dissolved constituents hinders predictive understanding of system behavior. The 'Sustainable Systems 2.0' project is developing genome-to-watershed scale predictive capabilities to quantify how the microbiome affects biogeochemical watershed functioning, how watershed-scale hydro-biogeochemical processes affect microbial functioning, and how these interactions co-evolve with climate and land-use changes. Development of such predictive capabilities is critical for guiding the optimal management of water resources, contaminant remediation, carbon stabilization, and agricultural sustainability - now and with global change. Initial investigations are focused on floodplains in the Colorado River Basin, and include iterative model development, experiments and observations with an early emphasis on subsurface aspects. Field experiments include local-scale experiments at Rifle CO to quantify spatiotemporal metabolic and geochemical responses to O2and nitrate amendments as well as floodplain-scale monitoring to quantify genomic and biogeochemical response to natural hydrological perturbations. Information obtained from such experiments are represented within GEWaSC, a Genome-Enabled Watershed Simulation Capability, which is being developed to allow mechanistic interrogation of how genomic information stored in a subsurface microbiome affects biogeochemical cycling. This presentation will describe the genome-to-watershed scale approach as well as early highlights associated with the project. Highlights include: first insights into the diversity of the subsurface microbiome and metabolic roles of organisms involved in subsurface nitrogen, sulfur and hydrogen and carbon cycling; the extreme variability of subsurface DOC and hydrological controls on carbon and nitrogen cycling; geophysical identification of floodplain hotspots that are useful for model parameterization; and GEWaSC demonstration of how incorporation of identified microbial metabolic processes improves prediction of the larger system biogeochemical behavior.

Ecological issues related to N deposition to natural ecosystems: research needs.

PubMed

Adams, Mary Beth

2003-06-01

There has and continues to be concern about the effects of elevated nitrogen (N) deposition on natural ecosystems. In this paper, research on natural ecosystems, including wetlands, heathlands, grasslands, steppe, naturally regenerated forests and deserts, is evaluated to determine what is known about nitrogen cycling in these ecosystems, the effects of elevated nitrogen on them and to identify research gaps. Aquatic ecosystems are not included in this review, except as they are part of the larger ecosystem. Research needs fall into several categories: (1) improved understanding and quantification of the N cycle, particularly relatively unstudied processes such as dry deposition, N fixation and decomposition/mineralization; (2) carbon cycling as affected by increased N deposition; (3) effects on arid ecosystems and other "neglected" ecosystems; (4) effects on complex ecosystems and interactions with other pollutants; (5) indicators and assessment tools for natural ecosystems.

ARID3B: a Novel Regulator of the Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycle

PubMed Central

Wood, Jennifer J.; Boyne, James R.; Paulus, Christina; Jackson, Brian R.; Nevels, Michael M.

2016-01-01

ABSTRACT Kaposi's sarcoma-associated herpesvirus (KSHV) is the causative agent of commonly fatal malignancies of immunocompromised individuals, including primary effusion lymphoma (PEL) and Kaposi's sarcoma (KS). A hallmark of all herpesviruses is their biphasic life cycle—viral latency and the productive lytic cycle—and it is well established that reactivation of the KSHV lytic cycle is associated with KS pathogenesis. Therefore, a thorough appreciation of the mechanisms that govern reactivation is required to better understand disease progression. The viral protein replication and transcription activator (RTA) is the KSHV lytic switch protein due to its ability to drive the expression of various lytic genes, leading to reactivation of the entire lytic cycle. While the mechanisms for activating lytic gene expression have received much attention, how RTA impacts cellular function is less well understood. To address this, we developed a cell line with doxycycline-inducible RTA expression and applied stable isotope labeling of amino acids in cell culture (SILAC)-based quantitative proteomics. Using this methodology, we have identified a novel cellular protein (AT-rich interacting domain containing 3B [ARID3B]) whose expression was enhanced by RTA and that relocalized to replication compartments upon lytic reactivation. We also show that small interfering RNA (siRNA) knockdown or overexpression of ARID3B led to an enhancement or inhibition of lytic reactivation, respectively. Furthermore, DNA affinity and chromatin immunoprecipitation assays demonstrated that ARID3B specifically interacts with A/T-rich elements in the KSHV origin of lytic replication (oriLyt), and this was dependent on lytic cycle reactivation. Therefore, we have identified a novel cellular protein whose expression is enhanced by KSHV RTA with the ability to inhibit KSHV reactivation. IMPORTANCE Kaposi's sarcoma-associated herpesvirus (KSHV) is the causative agent of fatal malignancies of immunocompromised individuals, including Kaposi's sarcoma (KS). Herpesviruses are able to establish a latent infection, in which they escape immune detection by restricting viral gene expression. Importantly, however, reactivation of productive viral replication (the lytic cycle) is necessary for the pathogenesis of KS. Therefore, it is important that we comprehensively understand the mechanisms that govern lytic reactivation, to better understand disease progression. In this study, we have identified a novel cellular protein (AT-rich interacting domain protein 3B [ARID3B]) that we show is able to temper lytic reactivation. We showed that the master lytic switch protein, RTA, enhanced ARID3B levels, which then interacted with viral DNA in a lytic cycle-dependent manner. Therefore, we have added a new factor to the list of cellular proteins that regulate the KSHV lytic cycle, which has implications for our understanding of KSHV biology. PMID:27512077

Another place, another timer: Marine species and the rhythms of life

PubMed Central

Tessmar-Raible, Kristin; Raible, Florian; Arboleda, Enrique

2011-01-01

The marine ecosystem is governed by a multitude of environmental cycles, all of which are linked to the periodical recurrence of the sun or the moon. In accordance with these cycles, marine species exhibit a variety of biological rhythms, ranging from circadian and circatidal rhythms to circalunar and seasonal rhythms. However, our current molecular understanding of biological rhythms and clocks is largely restricted to solar-controlled circadian and seasonal rhythms in land model species. Here, we discuss the first molecular data emerging for circalunar and circatidal rhythms and present selected species suitable for further molecular analyses. We argue that a re-focus on marine species will be crucial to understand the principles, interactions and evolution of rhythms that govern a broad range of eukaryotes, including ourselves. PMID:21254149

Live cell imaging of the HIV-1 life cycle

PubMed Central

Campbell, Edward M.; Hope, Thomas J.

2010-01-01

Technology developed in the past 10 years has dramatically increased the ability of researchers to directly visualize and measure various stages of the HIV type 1 (HIV-1) life cycle. In many cases, imaging-based approaches have filled critical gaps in our understanding of how certain aspects of viral replication occur in cells. Specifically, live cell imaging has allowed a better understanding of dynamic, transient events that occur during HIV-1 replication, including the steps involved in viral fusion, trafficking of the viral nucleoprotein complex in the cytoplasm and even the nucleus during infection and the formation of new virions from an infected cell. In this review, we discuss how researchers have exploited fluorescent microscopy methodologies to observe and quantify these events occurring during the replication of HIV-1 in living cells. PMID:18977142

Challenges and opportunities for managing aquatic mercury pollution in altered landscapes.

PubMed

Hsu-Kim, Heileen; Eckley, Chris S; Achá, Dario; Feng, Xinbin; Gilmour, Cynthia C; Jonsson, Sofi; Mitchell, Carl P J

2018-03-01

The environmental cycling of mercury (Hg) can be affected by natural and anthropogenic perturbations. Of particular concern is how these disruptions increase mobilization of Hg from sites and alter the formation of monomethylmercury (MeHg), a bioaccumulative form of Hg for humans and wildlife. The scientific community has made significant advances in recent years in understanding the processes contributing to the risk of MeHg in the environment. The objective of this paper is to synthesize the scientific understanding of how Hg cycling in the aquatic environment is influenced by landscape perturbations at the local scale, perturbations that include watershed loadings, deforestation, reservoir and wetland creation, rice production, urbanization, mining and industrial point source pollution, and remediation. We focus on the major challenges associated with each type of alteration, as well as management opportunities that could lessen both MeHg levels in biota and exposure to humans. For example, our understanding of approximate response times to changes in Hg inputs from various sources or landscape alterations could lead to policies that prioritize the avoidance of certain activities in the most vulnerable systems and sequestration of Hg in deep soil and sediment pools. The remediation of Hg pollution from historical mining and other industries is shifting towards in situ technologies that could be less disruptive and less costly than conventional approaches. Contemporary artisanal gold mining has well-documented impacts with respect to Hg; however, significant social and political challenges remain in implementing effective policies to minimize Hg use. Much remains to be learned as we strive towards the meaningful application of our understanding for stakeholders, including communities living near Hg-polluted sites, environmental policy makers, and scientists and engineers tasked with developing watershed management solutions. Site-specific assessments of MeHg exposure risk will require new methods to predict the impacts of anthropogenic perturbations and an understanding of the complexity of Hg cycling at the local scale.

Career management: understanding the process.

PubMed

Mackowiak, J; Eckel, F M

1985-02-01

This article is the first of a three-part series on career management for hospital pharmacists. Work attitudes, life cycles, needs, and career trends are discussed. Three basic work attitudes exist. Some see work as punishment. Others believe work in itself is good, i.e., they have a strong work ethic. Some view work as a means to satisfy, at least partially, a range of needs. Attitudinal transition points are likely to occur at specific times in the adult life cycle. The stages of the life cycle can be labeled as leaving, reaching out, questioning, midlife crisis, settling down, and mellowing. A progression through each of these stages is required for normal adult psychological development. Every individual exhibits a blend of needs that changes throughout life. Jobs can fulfill existence, relatedness, and growth needs. Relatedness needs include the need for love, affiliation, social esteem, and power, and growth needs include the need for self-esteem, competence, achievement, and autonomy. Three important career trends are the changing opportunities for advancement, women in careers, and dual-career couples. The number of women pharmacists is increasing as is the number of two-career couples. Tips for managing two-career relationships are presented. Pharmacists can manage their careers more effectively by understanding their needs, identifying their basic attitude toward work, and being aware of the trends occurring in pharmacy.

Effect of soil in nutrient cycle assessment at dairy farms

NASA Astrophysics Data System (ADS)

van Leeuwen, Maricke; de Boer, Imke; van Dam, Jos; van Middelaar, Corina; Stoof, Cathelijne

2016-04-01

Annual farm nutrient cycle assessments give valuable insight in the nutrient cycles and nutrient losses at dairy farms. It describes nutrient use efficiencies for the entire farm and for the underlying components cattle, manure, crops and soil. In many modelling studies, soil is kept as a constant factor, while soil quality is vital for soil functioning of the ecosystem. Improving soil quality will improve the nutrient cycle, and will also have positive effect on the soil functions crop production, water cycling and greenhouse gas mitigation. Spatial variation of soil properties within a farm, however, are not included in annual nutrient cycle assessments. Therefore it is impossible to identify fields where most profit can be gained by improving farm management at field level, and it is not possible to identify and to quantify nutrient flow path ways. The aim of this study is to develop a framework to improve the annual nutrient cycle assessment at Dutch dairy farms, by including soil properties and their spatial variation within farms. Soil type and soil quality will be described by visual soil assessment of soil quality characteristics. The visual observations will be linked to the nutrient cycle assessment, using soil-hydrological model SWAP. We will demonstrate how soil quality at field level can impact on crop production, eutrophication potential and greenhouse gas potential at farm level. Also, we will show how this framework can be used by farmers to improve their farm management. This new approach is focusing on annual nutrient cycle assessment, but could also be used in life cycle assessment. It will improve understanding of soil functioning and dairy farm management.

The role of forage systems in environmentally sustainable beef

USDA-ARS?s Scientific Manuscript database

To develop better scientific understanding of the sustainability of beef in the United States, a national assessment is being conducted with support from the Beef Checkoff. This includes a life cycle assessment (LCA) of important environmental, social and economic impact categories of the beef value...

A Botany Unit: Seed Plants.

ERIC Educational Resources Information Center

Smythe, Cathy

1983-01-01

Presents a botany unit designed to provide understanding of a plant life cycle, plant parts and functions, and variety within the plant world. The unit is organized according to plant morphology (structure). Each section includes concepts fostered, suggestions for focused discussions, experiments, and activities to support concept development.…

Pets in the family: practical approaches.

PubMed

Hodgson, Kate; Darling, Marcia

2011-01-01

Adapting family life cycle theory to include pets provides veterinarians with a framework for understanding and reinforcing the human-animal bond. The family genogram with pets is a practice tool that identifies all people and pets in the family, enhancing the practice of One Health at the community level.

Using Ants To Investigate the Environment.

ERIC Educational Resources Information Center

Hagevik, Rita A.

2003-01-01

Describes three inquiry-based activities designed for students to begin to understand complex environmental relationships in their own backyard. Includes investigations of ants, which allow students to establish a baseline survey of ant fauna, test the importance of ants in nutrient cycling and soil structure maintenances, and increase student…

Long-term Performance of Granular Bases Including the Effect of Wet-Dry Cycles on Inverted Base Pavement Performance

DOT National Transportation Integrated Search

2017-06-01

The main objective of this study was to advance the understanding of alternative pavement designs. In particular, potential techniques such as inverted base pavements (IBP) have increased the importance of granular aggregate bases (GAB) in pavement s...

Ecology of Nitrogen Fixing, Nitrifying, and Denitrifying Microorganisms in Tropical Forest Soils

PubMed Central

Pajares, Silvia; Bohannan, Brendan J. M.

2016-01-01

Soil microorganisms play important roles in nitrogen cycling within forest ecosystems. Current research has revealed that a wider variety of microorganisms, with unexpected diversity in their functions and phylogenies, are involved in the nitrogen cycle than previously thought, including nitrogen-fixing bacteria, ammonia-oxidizing bacteria and archaea, heterotrophic nitrifying microorganisms, and anammox bacteria, as well as denitrifying bacteria, archaea, and fungi. However, the vast majority of this research has been focused in temperate regions, and relatively little is known regarding the ecology of nitrogen-cycling microorganisms within tropical and subtropical ecosystems. Tropical forests are characterized by relatively high precipitation, low annual temperature fluctuation, high heterogeneity in plant diversity, large amounts of plant litter, and unique soil chemistry. For these reasons, regulation of the nitrogen cycle in tropical forests may be very different from that of temperate ecosystems. This is of great importance because of growing concerns regarding the effect of land use change and chronic-elevated nitrogen deposition on nitrogen-cycling processes in tropical forests. In the context of global change, it is crucial to understand how environmental factors and land use changes in tropical ecosystems influence the composition, abundance and activity of key players in the nitrogen cycle. In this review, we synthesize the limited currently available information regarding the microbial communities involved in nitrogen fixation, nitrification and denitrification, to provide deeper insight into the mechanisms regulating nitrogen cycling in tropical forest ecosystems. We also highlight the large gaps in our understanding of microbially mediated nitrogen processes in tropical forest soils and identify important areas for future research. PMID:27468277

Revisiting historical climatic signals to better explore the future: prospects of water cycle changes in Central Sahel

NASA Astrophysics Data System (ADS)

Leauthaud, C.; Demarty, J.; Cappelaere, B.; Grippa, M.; Kergoat, L.; Velluet, C.; Guichard, F.; Mougin, E.; Chelbi, S.; Sultan, B.

2015-06-01

Rainfall and climatic conditions are the main drivers of natural and cultivated vegetation productivity in the semiarid region of Central Sahel. In a context of decreasing cultivable area per capita, understanding and predicting changes in the water cycle are crucial. Yet, it remains challenging to project future climatic conditions in West Africa since there is no consensus on the sign of future precipitation changes in simulations coming from climate models. The Sahel region has experienced severe climatic changes in the past 60 years that can provide a first basis to understand the response of the water cycle to non-stationary conditions in this part of the world. The objective of this study was to better understand the response of the water cycle to highly variable climatic regimes in Central Sahel using historical climate records and the coupling of a land surface energy and water model with a vegetation model that, when combined, simulated the Sahelian water, energy and vegetation cycles. To do so, we relied on a reconstructed long-term climate series in Niamey, Republic of Niger, in which three precipitation regimes can be distinguished with a relative deficit exceeding 25% for the driest period compared to the wettest period. Two temperature scenarios (+2 and +4 °C) consistent with future warming scenarios were superimposed to this climatic signal to generate six virtual future 20-year climate time series. Simulations by the two coupled models forced by these virtual scenarios showed a strong response of the water budget and its components to temperature and precipitation changes, including decreases in transpiration, runoff and drainage for all scenarios but those with highest precipitation. Such climatic changes also strongly impacted soil temperature and moisture. This study illustrates the potential of using the strong climatic variations recorded in the past decades to better understand potential future climate variations.

Assessing Students' Disciplinary and Interdisciplinary Understanding of Global Carbon Cycling

ERIC Educational Resources Information Center

You, Hye Sun; Marshall, Jill A.; Delgado, Cesar

2018-01-01

Global carbon cycling describes the movement of carbon through atmosphere, biosphere, geosphere, and hydrosphere; it lies at the heart of climate change and sustainability. To understand the global carbon cycle, students will require "interdisciplinary knowledge." While standards documents in science education have long promoted…

Pyrogenic Carbon as a Nonlinear Driver in the Carbon and Nitrogen Cycles

NASA Astrophysics Data System (ADS)

Masiello, C. A.; Silberg, J. J.; Cheng, H. Y.; Gao, X.; Del Valle, I.

2016-12-01

Our first conceptual models of pyrogenic carbon's effects on the carbon cycle treated this material as a form of organic matter whose environmental residence time was long enough to render it inert, and PyC was modeled as an unreactive mass that moved through C cycle reservoirs essentially unmodified. This concept saw modifications with the recognition that some fractions of PyC were labile. For example, the reactive sugars and lignin monomers cleaved off the lignocellulose matrix by heating have lifetimes on the order of hours to weeks. However, the now-common multiple component model of PyC does not satisfactorily explain many nonlinearities that have been observed when it is added to soils. These nonlinearities include the positive and negative "priming" effects sometimes triggered, where the presence of PyC in some matrices can trigger shifts in the overall microbial community metabolism, as well as alteration of microbial community structure, shifts in the behavior of belowground and aboveground plant parasites, and shifted rates of greenhouse gas emissions that are not well-correlated to shifts in soil hydrologic processes. To understand the effects of PyC on the global C and N cycles, we will need a better understanding of the mechanisms behind PyC-driven C and N cycle nonlinearities. This talk will examine potential mechanisms driving the nonlinearities observed in soil systems following the introduction of PyC. Potential mechanisms discussed will include PyC effects on soil microbial communication and PyC effects on microbial electron transfer. Cell-cell communication through the secretion and detection of small molecules is used by soil microbes to manage many biogeochemically relevant processes including production of biofilms, production of extracellular enzymes, and management of methanogenesis and denitrification. PyC disrupts microbial cell-cell communication differentially, altering some species' ability to communicate more than others. Electron transfer between microbes is a central part of many environmental syntrophies, including those responsible for methanogenesis, and has been shown to be altered by the presence of PyC. Both these processes may underlie observed ecosystem-scale shifts following PyC amendment to soils.

Applying metapopulation theory to conservation of migratory birds

USGS Publications Warehouse

Esler, Daniel N.

2000-01-01

Metapopulation theory has proven useful for understanding the population structure and dynamics of many species of conservation concern. The metapopulation concept has been applied almost exclusively to nonmigratory species, however, for which subpopulation demographic independence—a requirement for a classically defined metapopulation - is explicitly related to geographic distribution and dispersal probabilities. Defining the degree of demographic independence among subpopulations of migratory animals, and thus the applicability of metapopulation theory as a conceptual framework for understanding population dynamics, is much more difficult. Unlike nonmigratory species, subpopulations of migratory animals cannot be defined as synonymous with geographic areas. Groups of migratory birds that are geographically separate at one part of the annual cycle may occur together at others, but co-occurrence in time and space does not preclude the demographic independence of subpopulations. I suggest that metapopulation theory can be applied to migratory species but that understanding the degree of subpopulation independence may require information about both spatial distribution throughout the annual cycle and behavioral mechanisms that may lead to subpopulation demographic independence. The key for applying metapopulation theory to migratory animals lies in identifying demographically independent subpopulations, even as they move during the annual cycle and potentially co-occur with other subpopulations. Using examples of migratory bird species, I demonstrate that spatial and temporal modes of subpopulation independence can interact with behavioral mechanisms to create demographically independent subpopulations, including cases in which subpopulations are not spatially distinct in some parts of the annual cycle.

The CARIACO Ocean Time-Series: two decades of oceanographic observations to understand linkages between biogeochemistry, ecology, and long-term environmental variability.

NASA Astrophysics Data System (ADS)

Lorenzoni, L.; Muller-Karger, F. E.; Rueda-Roa, D. T.; Thunell, R.; Scranton, M. I.; Taylor, G. T.; benitez-Nelson, C. R.; Montes, E.; Astor, Y. M.; Rojas, J.

2016-02-01

The CARIACO Ocean Time-Series project, located in the Cariaco Basin off the coast of Venezuela, seeks to understand relationships between hydrography, primary production, community composition, microbial activity, particle fluxes, and element cycling in the water column, and how variations in these processes are preserved in sediments accumulating in this anoxic basin. CARIACO uses autonomous and shipboard measurements to understand ecological and biogeochemical changes and how these relate to regional and global climatic/ocean variability. CARIACO is a model for national ocean observing programs in Central/South America, and has been developed as a community facility platform with open access to all data (http://imars.marine.usf.edu/cariaco). Research resulting from this program has contributed to knowledge about the decomposition and cycling of particles, the biological pump, and to our understanding of the ecology and oceanography of oxygen minimum zones. Despite this basin being anoxic below 250m, remineralization rates of organic matter are comparable to those in well oxygenated waters. A dynamic microbial community significantly influences carbon and nutrient biogeochemical cycling throughout the water column. Since 1995, declining particulate organic carbon fluxes have been measured throughout the water column using sediment traps, likely in response to declining Chl-a concentrations and smaller phytoplankton which have replaced the larger taxa over the past decade. This community shift appears to be caused by regional changes in the physical regime. CARIACO also recorded marked long-term changes in surface and deep DIC in response to a combination of factors including surface water warming. The observations of CARIACO highlight the importance of a sustained, holistic approach to studying biodiversity, ecology and the marine carbon cycle to predict potential impacts of climate change on the ocean's ecosystem services and carbon sequestration efficiency.

History and contemporary significance of the Rhynie cherts-our earliest preserved terrestrial ecosystem.

PubMed

Edwards, Dianne; Kenrick, Paul; Dolan, Liam

2018-02-05

The Rhynie cherts Unit is a 407 million-year old geological site in Scotland that preserves the most ancient known land plant ecosystem, including associated animals, fungi, algae and bacteria. The quality of preservation is astonishing, and the initial description of several plants 100 years ago had a huge impact on botany. Subsequent discoveries provided unparalleled insights into early life on land. These include the earliest records of plant life cycles and fungal symbioses, the nature of soil microorganisms and the diversity of arthropods. Today the Rhynie chert (here including the Rhynie and Windyfield cherts) takes on new relevance, especially in relation to advances in the fields of developmental genetics and Earth systems science. New methods and analytical techniques also contribute to a better understanding of the environment and its organisms. Key discoveries are reviewed, focusing on the geology of the site, the organisms and the palaeoenvironments. The plants and their symbionts are of particular relevance to understanding the early evolution of the plant life cycle and the origins of fundamental organs and tissue systems. The Rhynie chert provides remarkable insights into the structure and interactions of early terrestrial communities, and it has a significant role to play in developing our understanding of their broader impact on Earth systems.This article is part of a discussion meeting issue 'The Rhynie cherts: our earliest terrestrial ecosystem revisited'. © 2017 The Author(s).

Effectiveness and student perceptions of an active learning activity using a headline news story to enhance in-class learning of cell cycle regulation.

PubMed

Dirks-Naylor, Amie J

2016-06-01

An active learning activity was used to engage students and enhance in-class learning of cell cycle regulation in a PharmD level integrated biological sciences course. The aim of the present study was to determine the effectiveness and perception of the in-class activity. After completion of a lecture on the topic of cell cycle regulation, students completed a 10-question multiple-choice quiz before and after engaging in the activity. The activity involved reading of a headline news article published by ScienceDaily.com entitled "One Gene Lost Equals One limb Regained." The name of the gene was deleted from the article and, thus, the end goal of the activity was to determine the gene of interest by the description in the story. The activity included compiling a list of all potential gene candidates before sufficient information was given to identify the gene of interest (p21). A survey was completed to determine student perceptions of the activity. Quiz scores improved by an average of 20% after the activity (40.1 ± 1.95 vs. 59.9 ± 2.14,P< 0.0001,n= 96). Students enjoyed the activity, found the news article interesting, and believed that the activity improved their understanding of cell cycle regulation. The majority of students agreed that the in-class activity piqued their interest for learning the subject matter and also agreed that if they understand a concept during class, they are more likely to want to study that concept outside of class. In conclusion, the activity improved in-class understanding and enhanced interest in cell cycle regulation. Copyright © 2016 The American Physiological Society.

Life cycle assessment of lignocellulosic ethanol: a review of key factors and methods affecting calculated GHG emissions and energy use.

PubMed

Gerbrandt, Kelsey; Chu, Pei Lin; Simmonds, Allison; Mullins, Kimberley A; MacLean, Heather L; Griffin, W Michael; Saville, Bradley A

2016-04-01

Lignocellulosic ethanol has potential for lower life cycle greenhouse gas emissions compared to gasoline and conventional grain-based ethanol. Ethanol production 'pathways' need to meet economic and environmental goals. Numerous life cycle assessments of lignocellulosic ethanol have been published over the last 15 years, but gaps remain in understanding life cycle performance due to insufficient data, and model and methodological issues. We highlight key aspects of these issues, drawing on literature and a case study of corn stover ethanol. Challenges include the complexity of feedstock/ecosystems and market-mediated aspects and the short history of commercial lignocellulosic ethanol facilities, which collectively have led to uncertainty in GHG emissions estimates, and to debates on LCA methods and the role of uncertainty in decision making. Copyright © 2016 Elsevier Ltd. All rights reserved.

Simulating the Outer Radiation Belt During the Rising Phase of Solar Cycle 24

NASA Technical Reports Server (NTRS)

Fok, Mei-Ching; Glocer, Alex; Zheng, Qiuhua; Chen, Sheng-Hsien; Kanekal, Shri; Nagai, Tsungunobu; Albert, Jay

2011-01-01

After prolonged period of solar minimum, there has been an increase in solar activity and its terrestrial consequences. We are in the midst of the rising phase of solar cycle 24, which began in January 2008. During the initial portion of the cycle, moderate geomagnetic storms occurred follow the 27 day solar rotation. Most of the storms were accompanied by increases in electron fluxes in the outer radiation belt. These enhancements were often preceded with rapid dropout at high L shells. We seek to understand the similarities and differences in radiation belt behavior during the active times observed during the of this solar cycle. This study includes extensive data and simulations our Radiation Belt Environment Model. We identify the processes, transport and wave-particle interactions, that are responsible for the flux dropout and the enhancement and recovery.

Spies and Bloggers: New Synthetic Biology Tools to Understand Microbial Processes in Soils and Sediments

NASA Astrophysics Data System (ADS)

Masiello, C. A.; Silberg, J. J.; Cheng, H. Y.; Del Valle, I.; Fulk, E. M.; Gao, X.; Bennett, G. N.

2017-12-01

Microbes can be programmed through synthetic biology to report on their behavior, informing researchers when their environment has triggered changes in their gene expression (e.g. in response to shifts in O2 or H2O), or when they have participated in a specific step of an elemental cycle (e.g. denitrification). This use of synthetic biology has the potential to significantly improve our understanding of microbes' roles in elemental and water cycling, because it allows reporting on the environment from the perspective of a microbe, matching the measurement scale exactly to the scale that a microbe experiences. However, synthetic microbes have not yet seen wide use in soil and sediment laboratory experiments because synthetic organisms typically report by fluorescing, making their signals difficult to detect outside the petri dish. We are developing a new suite of microbial programs that report instead by releasing easily-detected gases, allowing the real-time, noninvasive monitoring of behaviors in sediments and soils. Microbial biosensors can, in theory, be programmed to detect dynamic processes that contribute to a wide range of geobiological processes, including C cycling (biofilm production, methanogenesis, and synthesis of extracellular enzymes that degrade organic matter), N cycling (expression of enzymes that underlie different steps of the N cycle) and potentially S cycling. We will provide an overview of the potential uses of gas-reporting biosensors in soil and sediment lab experiments, and will report the development of the systematics of these sensors. Successful development of gas biosensors for laboratory use will require addressing issues including: engineering the intensity and selectivity of microbial gas production to maximize the signal to noise ratio; normalizing the gas reporter signal to cell population size, managing gas diffusion effects on signal shape; and developing multiple gases that can be used in parallel.

Stellar magnetic cycles

NASA Astrophysics Data System (ADS)

Baliunas, S. L.

2004-05-01

Is hope for understanding the solar magnetic cycle to be found in stars? Observations of stars with significant sub-surface convective zones -- masses smaller than about 1.5 solar masses on the lower main sequence and many types of cool, post-main-sequence stars -- indicate the presence of surface and atmospheric inhomogeneities analogous to solar magnetic features, making stellar magnetic activity a cosmically widespread phenomenon. Observations have been made primarily in visible wavelengths, and important information has also been derived from the ultraviolet and x-ray spectrum regions. Interannual to interdecadal variability of spectrum indicators of stellar magnetic features is common, and in some cases similar in appearance to the 11-year sunspot cycle. Successful models of the physical processes responsible for stellar magnetic cycles, typically cast as a magnetohydrodynamic dynamo, require advances in understanding not only convection but also the magnetic field's interaction with it. The observed facts that underpin the hope for models will be summarized. Properties of stellar magnetic cycles will be compared and contrasted with those of the sun, including inferences from paleo-environmental reservoirs that contain information on solar century- to millennial-scale magnetic variability. Partial support of this research came from NASA NAG5-7635, NRC COBASE, CRDF 322, MIT-MSG 5710001241, JPL 1236821, AF 49620-02-1-0194, Richard Lounsberry Foundation, Langley-Abbot, Rollins, Scholarly Studies and James Arthur Funds (Smithsonian Institution) and several generous individuals.

Life Cycle Assessment of Cooking Fuel Systems in India, China, Kenya, and Ghana (Slides)

EPA Science Inventory

This presentation was requested by the Global Alliance to augment they scheduled to present update on the use of LCA to better understand implications of future policy that consider all pollutants including criteria, air toxics, and other pollutants impacting air quality concerns...

From Flowers to Worms: Understanding Nature's Cycle.

ERIC Educational Resources Information Center

Texas Child Care, 1995

1995-01-01

Gardening helps children learn how plants sprout, grow, bloom, and then wither away, leaving seeds behind. Participating in this natural process allows children to experience the stages of life. Suggested gardening activities include studying dandelions, focusing on culture for garden plant selection, and constructing a worm box or worm terrarium…

Geospatial technology applications in forest hydrology

Treesearch

S.S. Panda; E. Masson; S. Sen; H.W. Kim; Devendra Amatya

2016-01-01

Two separate disciplines, hydrology and forestry, together constitute forest hydrology. It is obvious that forestry and forest hydrology disciplines are spatial entities. Forestry is the science that seeks to understand the nature of forests throygh their life cycle and interactions with the surrounding environment. Forest hydrology includes forest soil water, streams...

Genetic and environmental models of circadian disruption link SRC-2 function to hepatic pathology

USDA-ARS?s Scientific Manuscript database

Circadian rhythmicity is a fundamental process that synchronizes behavioral cues with metabolic homeostasis. Disruption of daily cycles due to jet lag or shift work results in severe physiological consequences including advanced aging, metabolic syndrome, and even cancer. Our understanding of the mo...

Assessing Understanding of the Learning Cycle: The ULC

NASA Astrophysics Data System (ADS)

Marek, Edmund A.; Maier, Steven J.; McCann, Florence

2008-08-01

An 18-item, multiple choice, 2-tiered instrument designed to measure understanding of the learning cycle (ULC) was developed and field-tested from the learning cycle test (LCT) of Odom and Settlage ( Journal of Science Teacher Education, 7, 123 142, 1996). All question sets of the LCT were modified to some degree and 5 new sets were added, resulting in the ULC. The ULC measures (a) understandings and misunderstandings of the learning cycle, (b) the learning cycle’s association with Piaget’s ( Biology and knowledge theory: An essay on the relations between organic regulations and cognitive processes, 1975) theory of mental functioning, and (c) applications of the learning cycle. The resulting ULC instrument was evaluated for internal consistency with Cronbach’s alpha, yielding a coefficient of .791.

Race matters: a systematic review of racial/ethnic disparity in Society for Assisted Reproductive Technology reported outcomes.

PubMed

Wellons, Melissa F; Fujimoto, Victor Y; Baker, Valerie L; Barrington, Debbie S; Broomfield, Diana; Catherino, William H; Richard-Davis, Gloria; Ryan, Mary; Thornton, Kim; Armstrong, Alicia Y

2012-08-01

To systematically review the reporting of race/ethnicity in Society for Assisted Reproductive Technology (SART) Clinic Outcome Reporting System (CORS) publications. Systematic review using Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) methodology of literature published in PubMed on race/ethnicity that includes data from SART CORS. Not applicable. Not applicable. In vitro fertilization cycles reported to SART. Any outcomes reported in SART CORS. Seven publications were identified that assessed racial/ethnic disparities in IVF outcomes using SART data. All reported a racial/ethnic disparity. However, more than 35% of cycles were excluded from analysis because of missing race/ethnicity data. Review of current publications of SART data suggests significant racial/ethnic disparities in IVF outcomes. However, the potential for selection bias limits confidence in these findings, given that fewer than 65% of SART reported cycles include race/ethnicity. Our understanding of how race/ethnicity influences ART outcome could be greatly improved if information on race/ethnicity was available for all reported cycles. Copyright © 2012 American Society for Reproductive Medicine. All rights reserved.

Students' Understanding of Analogy after a Core (Chemical Observations, Representations, Experimentation) Learning Cycle, General Chemistry Experiment

ERIC Educational Resources Information Center

Avargil, Shirly; Bruce, Mitchell R. M.; Amar, Franc¸ois G.; Bruce, Alice E.

2015-01-01

Students' understanding about analogy was investigated after a CORE learning cycle general chemistry experiment. CORE (Chemical Observations, Representations, Experimentation) is a new three-phase learning cycle that involves (phase 1) guiding students through chemical observations while they consider a series of open-ended questions, (phase 2)…

Developing Students' Understanding of Industrially Relevant Economic and Life Cycle Assessments

ERIC Educational Resources Information Center

Bode, Claudia J.; Chapman, Clint; Pennybaker, Atherly; Subramaniam, Bala

2017-01-01

Training future leaders to understand life cycle assessment data is critical for effective research, business, and sociopolitical decision-making. However, the technical nature of these life cycle reports often makes them challenging for students and other nonexperts to comprehend. Therefore, we outline here the key takeaways from recent economic…

Understanding the influence of orography on the precipitation diurnal cycle and the associated atmospheric processes in the central Andes

NASA Astrophysics Data System (ADS)

Junquas, C.; Takahashi, K.; Condom, T.; Espinoza, J.-C.; Chavez, S.; Sicart, J.-E.; Lebel, T.

2018-06-01

In the tropical Andes, the identification of the present synoptic mechanisms associated with the diurnal cycle of precipitation and its interaction with orography is a key step to understand how the atmospheric circulation influences the patterns of precipitation variability on longer time-scales. In particular we aim to better understand the combination of the local and regional mechanisms controlling the diurnal cycle of summertime (DJF) precipitation in the Northern Central Andes (NCA) region of Southern Peru. A climatology of the diurnal cycle is obtained from 15 wet seasons (2000-2014) of 3-hourly TRMM-3B42 data (0.25° × 0.25°) and swath data from the TRMM-2A25 precipitation radar product (5 km × 5 km). The main findings are: (1) in the NCA region, the diurnal cycle shows a maximum precipitation occurring during the day (night) in the western (eastern) side of the Andes highlands, (2) in the valleys of the Cuzco region and in the Amazon slope of the Andes the maximum (minimum) precipitation occurs during the night (day). The WRF (Weather Research and Forecasting) regional atmospheric model is used to simulate the mean diurnal cycle in the NCA region for the same period at 27 km and 9 km horizontal grid spacing and 3-hourly output, and at 3 km only for the month of January 2010 in the Cuzco valleys. Sensitivity experiments were also performed to investigate the effect of the topography on the observed rainfall patterns. The model reproduces the main diurnal precipitation features. The main atmospheric processes identified are: (1) the presence of a regional-scale cyclonic circulation strengthening during the afternoon, (2) diurnal thermally driven circulations at local scale, including upslope (downslope) wind and moisture transport during the day (night), (3) channelization of the upslope moisture transport from the Amazon along the Apurimac valleys toward the western part of the cordillera.

Biogeochemical redox processes and their impact on contaminant dynamics

USGS Publications Warehouse

Borch, Thomas; Kretzschmar, Ruben; Kappler, Andreas; Van Cappellen, Philippe; Ginder-Vogel, Matthew; Campbell, Kate M.

2010-01-01

Life and element cycling on Earth is directly related to electron transfer (or redox) reactions. An understanding of biogeochemical redox processes is crucial for predicting and protecting environmental health and can provide new opportunities for engineered remediation strategies. Energy can be released and stored by means of redox reactions via the oxidation of labile organic carbon or inorganic compounds (electron donors) by microorganisms coupled to the reduction of electron acceptors including humic substances, iron-bearing minerals, transition metals, metalloids, and actinides. Environmental redox processes play key roles in the formation and dissolution of mineral phases. Redox cycling of naturally occurring trace elements and their host minerals often controls the release or sequestration of inorganic contaminants. Redox processes control the chemical speciation, bioavailability, toxicity, and mobility of many major and trace elements including Fe, Mn, C, P, N, S, Cr, Cu, Co, As, Sb, Se, Hg, Tc, and U. Redox-active humic substances and mineral surfaces can catalyze the redox transformation and degradation of organic contaminants. In this review article, we highlight recent advances in our understanding of biogeochemical redox processes and their impact on contaminant fate and transport, including future research needs.

Precipitation Recycling

NASA Technical Reports Server (NTRS)

Eltahir, Elfatih A. B.; Bras, Rafael L.

1996-01-01

The water cycle regulates and reflects natural variability in climate at the regional and global scales. Large-scale human activities that involve changes in land cover, such as tropical deforestation, are likely to modify climate through changes in the water cycle. In order to understand, and hopefully be able to predict, the extent of these potential global and regional changes, we need first to understand how the water cycle works. In the past, most of the research in hydrology focused on the land branch of the water cycle, with little attention given to the atmospheric branch. The study of precipitation recycling which is defined as the contribution of local evaporation to local precipitation, aims at understanding hydrologic processes in the atmospheric branch of the water cycle. Simply stated, any study on precipitation recycling is about how the atmospheric branch of the water cycle works, namely, what happens to water vapor molecules after they evaporate from the surface, and where will they precipitate?

NASA Contributions to Improve Understanding of Extreme Events in the Global Energy and Water Cycle

NASA Technical Reports Server (NTRS)

Lapenta, William M.

2008-01-01

The U.S. Climate Change Science Program (CCSP) has established the water cycle goals of the Nation's climate change program. Accomplishing these goals will require, in part, an accurate accounting of the key reservoirs and fluxes associated with the global water and energy cycle, including their spatial and temporal variability. through integration of all necessary observations and research tools, To this end, in conjunction with NASA's Earth science research strategy, the overarching long-term NASA Energy and Water Cycle Study (NEWS) grand challenge can he summarized as documenting and enabling improved, observationally based, predictions of water and energy cycle consequences of Earth system variability and change. This challenge requires documenting and predicting trends in the rate of the Earth's water and energy cycling that corresponds to climate change and changes in the frequency and intensity of naturally occurring related meteorological and hydrologic events, which may vary as climate may vary in the future. The cycling of water and energy has obvious and significant implications for the health and prosperity of our society. The importance of documenting and predicting water and energy cycle variations and extremes is necessary to accomplish this benefit to society.

The state of understanding of the lithium-ion-battery graphite solid electrolyte interphase (SEI) and its relationship to formation cycling

DOE PAGES

An, Seong Jin; Li, Jianlin; Daniel, Claus; ...

2016-04-09

An in-depth review is presented on the science of lithium-ion battery (LIB) solid electrolyte interphase (SEI) formation on the graphite anode, including structure, morphology, chemical composition, electrochemistry, formation mechanism, and LIB formation cycling. During initial operation of LIBs, the SEI layer forms on the graphite surfaces, the most commonly used anode material, due to side reactions with the electrolyte solvent/salt at low electro-reduction potentials. It is accepted that the SEI layer is essential to the long-term performance of LIBs, and it also has an impact on its initial capacity loss, self-discharge characteristics, cycle life, rate capability, and safety. While themore » presence of the anode SEI layer is vital, it is difficult to control its formation and growth, as the chemical composition, morphology, and stability depend on several factors. These factors include the type of graphite, electrolyte composition, electrochemical conditions, and cell temperature. Thus, SEI layer formation and electrochemical stability over long-term operation should be a primary topic of future investigation in the development of LIB technology. We review the progression of knowledge gained about the anode SEI, from its discovery in 1979 to the current state of understanding, and covers its formation process, differences in the chemical and structural makeup when cell materials and components are varied, methods of characterization, and associated reactions with the liquid electrolyte phase. It also discusses the relationship of the SEI layer to the LIB formation step, which involves both electrolyte wetting and subsequent slow charge-discharge cycles to grow the SEI.« less

Quantitative imaging with Fucci and mathematics to uncover temporal dynamics of cell cycle progression.

PubMed

Saitou, Takashi; Imamura, Takeshi

2016-01-01

Cell cycle progression is strictly coordinated to ensure proper tissue growth, development, and regeneration of multicellular organisms. Spatiotemporal visualization of cell cycle phases directly helps us to obtain a deeper understanding of controlled, multicellular, cell cycle progression. The fluorescent ubiquitination-based cell cycle indicator (Fucci) system allows us to monitor, in living cells, the G1 and the S/G2/M phases of the cell cycle in red and green fluorescent colors, respectively. Since the discovery of Fucci technology, it has found numerous applications in the characterization of the timing of cell cycle phase transitions under diverse conditions and various biological processes. However, due to the complexity of cell cycle dynamics, understanding of specific patterns of cell cycle progression is still far from complete. In order to tackle this issue, quantitative approaches combined with mathematical modeling seem to be essential. Here, we review several studies that attempted to integrate Fucci technology and mathematical models to obtain quantitative information regarding cell cycle regulatory patterns. Focusing on the technological development of utilizing mathematics to retrieve meaningful information from the Fucci producing data, we discuss how the combined methods advance a quantitative understanding of cell cycle regulation. © 2015 Japanese Society of Developmental Biologists.

Environmental health impact in the hospital laundry.

PubMed

Byrns, G E; Bland, L A

1980-01-01

The task of surveying the hospital laundry is often dismissed by public health officials as unnecessary because the laundry cycle is generally considered to be capable of destroying all pathogens. Even though a properly operated laundry can produce a relatively bacteria free product, there are a number of variables that have an impact on the bacterial quality of the linen before it reaches the patient. It is vital that surveillance personnel understand these factors during processing, transporting, or sorting linen so that the final product is aesthetically, chemically, and bacteriologically acceptable for patient use. At the U. S. Public Health Service Hospital laundry in New Orleans, surveillance by the Environmental Health Department has identified potential problem areas. Operational improvements have been instituted at this laundry that would not have been possible without a thorough understanding of the laundry cycle. The authors describe the laundry cycle, including potential problem areas; identify useful microbial and chemical surveillance methods; and discuss process control procedures. This information will help the environmental health worker in discussions with laundry personnel regarding contamination control and operational efficiency.

A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles.

PubMed

Louyakis, Artemis S; Gourlé, Hadrien; Casaburi, Giorgio; Bonjawo, Rachelle M E; Duscher, Alexandrea A; Foster, Jamie S

2018-02-01

Microbialites are one of the oldest known ecosystems on Earth and the coordinated metabolisms and activities of these mineral-depositing communities have had a profound impact on the habitability of the planet. Despite efforts to understand the diversity and metabolic potential of these systems, there has not been a systematic molecular analysis of the transcriptional changes that occur within a living microbialite over time. In this study, we generated metatranscriptomic libraries from actively growing thrombolites, a type of microbialite, throughout diel and seasonal cycles and observed dynamic shifts in the population and metabolic transcriptional activity. The most transcribed genes in all seasons were associated with photosynthesis, but only transcripts associated with photosystem II exhibited diel cycling. Photosystem I transcripts were constitutively expressed at all time points including midnight and sunrise. Transcripts associated with nitrogen fixation, methanogenesis and dissimilatory sulfate reduction exhibited diel cycling, and variability between seasons. Networking analysis of the metatranscriptomes showed correlated expression patterns helping to elucidate how metabolic interactions are coordinated within the thrombolite community. These findings have identified distinctive temporal patterns within the thrombolites and will serve an important foundation to understand the mechanisms by which these communities form and respond to changes in their environment. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Teaching Systems Thinking in the Context of the Water Cycle

NASA Astrophysics Data System (ADS)

Lee, Tammy D.; Gail Jones, M.; Chesnutt, Katherine

2017-06-01

Complex systems affect every part of our lives from the ecosystems that we inhabit and share with other living organisms to the systems that supply our water (i.e., water cycle). Evaluating events, entities, problems, and systems from multiple perspectives is known as a systems thinking approach. New curriculum standards have made explicit the call for teaching with a systems thinking approach in our science classrooms. However, little is known about how elementary in-service or pre-service teachers understand complex systems especially in terms of systems thinking. This mixed methods study investigated 67 elementary in-service teachers' and 69 pre-service teachers' knowledge of a complex system (e.g., water cycle) and their knowledge of systems thinking. Semi-structured interviews were conducted with a sub-sample of participants. Quantitative and qualitative analyses of content assessment data and questionnaires were conducted. Results from this study showed elementary in-service and pre-service teachers applied different levels of systems thinking from novice to intermediate. Common barriers to complete systems thinking were identified with both in-service and pre-service teachers and included identifying components and processes, recognizing multiple interactions and relationships between subsystems and hidden dimensions, and difficulty understanding the human impact on the water cycle system.

Systematic review of the application of the plan–do–study–act method to improve quality in healthcare

PubMed Central

Taylor, Michael J; McNicholas, Chris; Nicolay, Chris; Darzi, Ara; Bell, Derek; Reed, Julie E

2014-01-01

Background Plan–do–study–act (PDSA) cycles provide a structure for iterative testing of changes to improve quality of systems. The method is widely accepted in healthcare improvement; however there is little overarching evaluation of how the method is applied. This paper proposes a theoretical framework for assessing the quality of application of PDSA cycles and explores the consistency with which the method has been applied in peer-reviewed literature against this framework. Methods NHS Evidence and Cochrane databases were searched by three independent reviewers. Empirical studies were included that reported application of the PDSA method in healthcare. Application of PDSA cycles was assessed against key features of the method, including documentation characteristics, use of iterative cycles, prediction-based testing of change, initial small-scale testing and use of data over time. Results 73 of 409 individual articles identified met the inclusion criteria. Of the 73 articles, 47 documented PDSA cycles in sufficient detail for full analysis against the whole framework. Many of these studies reported application of the PDSA method that failed to accord with primary features of the method. Less than 20% (14/73) fully documented the application of a sequence of iterative cycles. Furthermore, a lack of adherence to the notion of small-scale change is apparent and only 15% (7/47) reported the use of quantitative data at monthly or more frequent data intervals to inform progression of cycles. Discussion To progress the development of the science of improvement, a greater understanding of the use of improvement methods, including PDSA, is essential to draw reliable conclusions about their effectiveness. This would be supported by the development of systematic and rigorous standards for the application and reporting of PDSAs. PMID:24025320

Division of labour between Myc and G1 cyclins in cell cycle commitment and pace control.

PubMed

Dong, Peng; Maddali, Manoj V; Srimani, Jaydeep K; Thélot, François; Nevins, Joseph R; Mathey-Prevot, Bernard; You, Lingchong

2014-09-01

A body of evidence has shown that the control of E2F transcription factor activity is critical for determining cell cycle entry and cell proliferation. However, an understanding of the precise determinants of this control, including the role of other cell-cycle regulatory activities, has not been clearly defined. Here, recognizing that the contributions of individual regulatory components could be masked by heterogeneity in populations of cells, we model the potential roles of individual components together with the use of an integrated system to follow E2F dynamics at the single-cell level and in real time. These analyses reveal that crossing a threshold amplitude of E2F accumulation determines cell cycle commitment. Importantly, we find that Myc is critical in modulating the amplitude, whereas cyclin D/E activities have little effect on amplitude but do contribute to the modulation of duration of E2F activation, thereby affecting the pace of cell cycle progression.

Understanding Solar Cycle Variability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cameron, R. H.; Schüssler, M., E-mail: cameron@mps.mpg.de

The level of solar magnetic activity, as exemplified by the number of sunspots and by energetic events in the corona, varies on a wide range of timescales. Most prominent is the 11-year solar cycle, which is significantly modulated on longer timescales. Drawing from dynamo theory, together with the empirical results of past solar activity and similar phenomena for solar-like stars, we show that the variability of the solar cycle can be essentially understood in terms of a weakly nonlinear limit cycle affected by random noise. In contrast to ad hoc “toy models” for the solar cycle, this leads to amore » generic normal-form model, whose parameters are all constrained by observations. The model reproduces the characteristics of the variable solar activity on timescales between decades and millennia, including the occurrence and statistics of extended periods of very low activity (grand minima). Comparison with results obtained with a Babcock–Leighton-type dynamo model confirm the validity of the normal-mode approach.« less

Life cycle greenhouse gas emissions and freshwater consumption associated with Bakken tight oil

PubMed Central

Laurenzi, Ian J.; Bergerson, Joule A.; Motazedi, Kavan

2016-01-01

In recent years, hydraulic fracturing and horizontal drilling have been applied to extract crude oil from tight reservoirs, including the Bakken formation. There is growing interest in understanding the greenhouse gas (GHG) emissions associated with the development of tight oil. We conducted a life cycle assessment of Bakken crude using data from operations throughout the supply chain, including drilling and completion, refining, and use of refined products. If associated gas is gathered throughout the Bakken well life cycle, then the well to wheel GHG emissions are estimated to be 89 g CO2eq/MJ (80% CI, 87–94) of Bakken-derived gasoline and 90 g CO2eq/MJ (80% CI, 88–94) of diesel. If associated gas is flared for the first 12 mo of production, then life cycle GHG emissions increase by 5% on average. Regardless of the level of flaring, the Bakken life cycle GHG emissions are comparable to those of other crudes refined in the United States because flaring GHG emissions are largely offset at the refinery due to the physical properties of this tight oil. We also assessed the life cycle freshwater consumptions of Bakken-derived gasoline and diesel to be 1.14 (80% CI, 0.67–2.15) and 1.22 barrel/barrel (80% CI, 0.71–2.29), respectively, 13% of which is associated with hydraulic fracturing. PMID:27849573

Nickel-Hydrogen Cell Testing Experience, NASA/Goddard Space Flight Center

NASA Technical Reports Server (NTRS)

Rao, Gopalakrishna M.

1999-01-01

The objectives of the project were to test the Nickel-Hydrogen Cell to: (1) verify the Aerospace Cell Flight Worthiness, (2) Elucidate the Aerospace Cell Thermal Behavior, (3) Develop the Aerospace Battery Assembly Design(s) and In-orbit Battery Management plan(s) and (4) Understand the Aerospace Cell Failure Mechanism. The tests included the LEO and GEO Life cycle tests, Calorimetric Analysis, Destructive Physical analysis, and special tests. Charts show the Mission Profile Cycling Data, Stress Cycling Data. The test data complies with the mission requirements, validating the flight worthiness of batteries. The nominal stress and mission profile cycling performance test shows the charge voltage as high as 1.60V and recharge ratio greater than 1.05. It is apparent that the electrochemical signatures alone do not provide conclusive proof for Nickel precharge. The researchers recommend a gas and positive plate analyses for further confirmation.

Viral affects on metabolism: changes in glucose and glutamine utilization during human cytomegalovirus infection

PubMed Central

Yu, Yongjun; Clippinger, Amy J.; Alwine, James C.

2011-01-01

Human cytomegalovirus (HCMV) infection causes dramatic alterations of intermediary metabolism, similar to those found in tumor cells. In infected cells, glucose carbon is not completely broken down by the tricarboxylic acid (TCA) cycle for energy; instead it is used biosynthetically. This process requires increased glucose uptake, increased glycolysis and the diversion of glucose carbon, in the form of citrate, from the TCA cycle for use in HCMV-induced fatty acid biosynthesis. The diversion of citrate from the TCA cycle (cataplerosis) requires induction of enzymes to promote glutaminolysis, the conversion of glutamine to -ketoglutarate in order to maintain the TCA cycle (anaplerosis) and ATP production. Such changes could result in heretofore uncharacterized pathogenesis, potentially implicating HCMV as a subtle co-factor in many maladies, including oncogenesis. Recognition of the effects of HCMV, and other viruses, on host cell metabolism will provide new understanding of viral pathogenesis and novel avenues for antiviral therapy. PMID:21570293

Chemical Oceanography and the Marine Carbon Cycle

NASA Astrophysics Data System (ADS)

Emerson, Steven; Hedges, John

The principles of chemical oceanography provide insight into the processes regulating the marine carbon cycle. The text offers a background in chemical oceanography and a description of how chemical elements in seawater and ocean sediments are used as tracers of physical, biological, chemical and geological processes in the ocean. The first seven chapters present basic topics of thermodynamics, isotope systematics and carbonate chemistry, and explain the influence of life on ocean chemistry and how it has evolved in the recent (glacial-interglacial) past. This is followed by topics essential to understanding the carbon cycle, including organic geochemistry, air-sea gas exchange, diffusion and reaction kinetics, the marine and atmosphere carbon cycle and diagenesis in marine sediments. Figures are available to download from www.cambridge.org/9780521833134. Ideal as a textbook for upper-level undergraduates and graduates in oceanography, environmental chemistry, geochemistry and earth science and a valuable reference for researchers in oceanography.

Solar Activity Across the Scales: From Small-Scale Quiet-Sun Dynamics to Magnetic Activity Cycles

NASA Technical Reports Server (NTRS)

Kitiashvili, Irina N.; Collins, Nancy N.; Kosovichev, Alexander G.; Mansour, Nagi N.; Wray, Alan A.

2017-01-01

Observations as well as numerical and theoretical models show that solar dynamics is characterized by complicated interactions and energy exchanges among different temporal and spatial scales. It reveals magnetic self-organization processes from the smallest scale magnetized vortex tubes to the global activity variation known as the solar cycle. To understand these multiscale processes and their relationships, we use a two-fold approach: 1) realistic 3D radiative MHD simulations of local dynamics together with high resolution observations by IRIS, Hinode, and SDO; and 2) modeling of solar activity cycles by using simplified MHD dynamo models and mathematical data assimilation techniques. We present recent results of this approach, including the interpretation of observational results from NASA heliophysics missions and predictive capabilities. In particular, we discuss the links between small-scale dynamo processes in the convection zone and atmospheric dynamics, as well as an early prediction of Solar Cycle 25.

Thinking outside the channel: Modeling nitrogen cycling in networked river ecosystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Helton, Ashley; Poole, Geoffrey C.; Meyer, Judy

2011-01-01

Agricultural and urban development alters nitrogen and other biogeochemical cycles in rivers worldwide. Because such biogeochemical processes cannot be measured empirically across whole river networks, simulation models are critical tools for understanding river-network biogeochemistry. However, limitations inherent in current models restrict our ability to simulate biogeochemical dynamics among diverse river networks. We illustrate these limitations using a river-network model to scale up in situ measures of nitrogen cycling in eight catchments spanning various geophysical and land-use conditions. Our model results provide evidence that catchment characteristics typically excluded from models may control river-network biogeochemistry. Based on our findings, we identify importantmore » components of a revised strategy for simulating biogeochemical dynamics in river networks, including approaches to modeling terrestrial-aquatic linkages, hydrologic exchanges between the channel, floodplain/riparian complex, and subsurface waters, and interactions between coupled biogeochemical cycles.« less

Solar activity across the scales: from small-scale quiet-Sun dynamics to magnetic activity cycles

NASA Astrophysics Data System (ADS)

Kitiashvili, I.; Collins, N.; Kosovichev, A. G.; Mansour, N. N.; Wray, A. A.

2017-12-01

Observations as well as numerical and theoretical models show that solar dynamics is characterized by complicated interactions and energy exchanges among different temporal and spatial scales. It reveals magnetic self-organization processes from the smallest scale magnetized vortex tubes to the global activity variation known as the solar cycle. To understand these multiscale processes and their relationships, we use a two-fold approach: 1) realistic 3D radiative MHD simulations of local dynamics together with high-resolution observations by IRIS, Hinode, and SDO; and 2) modeling of solar activity cycles by using simplified MHD dynamo models and mathematical data assimilation techniques. We present recent results of this approach, including the interpretation of observational results from NASA heliophysics missions and predictive capabilities. In particular, we discuss the links between small-scale dynamo processes in the convection zone and atmospheric dynamics, as well as an early prediction of Solar Cycle 25.

Soil, environmental, and watershed measurements in support of carbon cycling studies in northwestern Mississippi

USGS Publications Warehouse

Huntington, T.G.; Harden, J.W.; Dabney, S.M.; Marion, D.A.; Alonso, C.; Sharpe, J.M.; Fries, T.L.

1998-01-01

Measurements including soil respiration, soil moisture, soil temperature, and carbon export in suspended sediments from small watersheds were recorded at several field sites in northwestern Mississippi in support of hillslope process studies associated with the U.S. Geological Survey's Mississippi Basin Carbon Project (MBCP). These measurements were made to provide information about carbon cycling in agricultural and forest ecosystems to understand the potential role of erosion and deposition in the sequestration of soil organic carbon in upland soils. The question of whether soil erosion and burial constitutes an important net sink of atmospheric carbon dioxide is one hypothesis that the MBCP is evaluating to better understand carbon cycling and climate change. This report contains discussion of methods used and presents data for the period December 1996 through March 1998. Included in the report are ancillary data provided by the U.S. Department of Agriculture (USDA) ARS National Sedimentation Laboratory and U.S. Forest Service (USFS) Center for Bottomland Hardwoods Research on rainfall, runoff, sediment yield, forest biomass and grain yield. Together with the data collected by the USGS these data permit the construction of carbon budgets and the calibration of models of soil organic matter dynamics and sediment transport and deposition. The U.S. Geological Survey (USGS) has established cooperative agreements with the USDA and USFS to facilitate collaborative research at research sites in northwestern Mississippi.

Examining Multiple Dimensions of Word Knowledge for Content Vocabulary Understanding

ERIC Educational Resources Information Center

Cervetti, Gina N.; Tilson, Jennifer L.; Castek, Jill; Bravo, Marco A.; Trainin, Guy

2012-01-01

This study traces the development of a vocabulary measure designed to assess multiple types of word knowledge. The assessment, which was administered in conjunction with a science unit about weather and the water cycle for third-and-fourth graders, included items for six knowledge types--recognition, definition, classification/example, context,…

Towards a predictive understanding of belowground process responses to climate change: have we moved any closer?

Treesearch

Elise Pendall; Lindsey Rustad; Josh Schimel

2008-01-01

Belowground processes, including root production and exudation, microbial activity and community dynamics, and biogeochemical cycling interact to help regulate climate change. Feedbacks associated with these processes, such as warming-enhanced decomposition rates, give rise to major uncertainties in predictions of future climate. Uncertainties associated with these...

Enhancing atmospheric mercury research in China to improve the current understanding of the global mercury cycle: the need for urgent and closely coordinated efforts.

PubMed

Ci, Zhijia; Zhang, Xiaoshan; Wang, Zhangwei

2012-06-05

The current understanding of the global mercury (Hg) cycle remains uncertain because Hg behavior in the environment is very complicated. The special property of Hg causes the atmosphere to be the most important medium for worldwide dispersion and transformation. The source and fate of atmospheric Hg and its interaction with the surface environment are the essential topics in the global Hg cycle. Recent declining measurement trends of Hg in the atmosphere are in apparent conflict with the increasing trends in global anthropogenic Hg emissions. As the single largest country contributor of anthropogenic Hg emission, China's role in the global Hg cycle will become more and more important in the context of the decreasing man-made Hg emission from developed regions. However, much less Hg information in China is available. As a global pollutant which undergoes long-range transport and is persistence in the environment, increasing Hg knowledge in China could not only promote the Hg regulation in this country but also improve the understanding of the fundamental of the global Hg cycle and further push the abatement of this toxin on a global scale. Then the atmospheric Hg research in China may be a breakthrough for improving the current understanding of the global Hg cycle. However, due to the complex behavior of Hg in the atmosphere, a deeper understanding of the atmospheric Hg cycle in China needs greater cooperation across fields.

Moving to a Soft Path for Water: Integrated Research and Management Needs

NASA Astrophysics Data System (ADS)

Gleick, P. H.

2011-12-01

Water on Earth in its three fundamental phases is integral to the functioning, dynamics, and variability of the global climatological and biological support systems. From a purely scientific point of view, understanding the complexity of the hydrological cycle is of paramount interest and central to our understanding of other planetary geological, atmospheric, chemical, and physical processes. But water is more than that: water is key to economic, social, and political issues as well, including some of the core challenges of our time such central to issues of poverty, health, environmental sustainability, conflict, and economic prosperity. The more society seeks to solve these challenges, the more obvious it becomes that we must improve more than just our understanding of the fundamental science of the hydrological cycle and its links with related global processes; we must also improve our understanding of the complex social, economic, and structural challenges facing water managers and users. We must move to a different paradigm where water is managed in a far more integrated way - what I call the "soft path for water." Central to our basic science needs are (1) an expansion of the frequency and nature of the data we collect, (2) the development of systems for managing, sharing, and analyzing those data, and (3) improvements in our ability to model and forecast the hydrological cycle together with other climatological, geophysical, and biochemical systems. These improvements would lead to a far better understanding of the local, regional, and global details of the water balance on timescales from minutes to millennia. These needs are increasingly well understood in the research community and extensive efforts in these areas are underway under the auspices of national research centers, universities, and international scientific collaborations. But it is also becoming increasingly apparent that many of the current water challenges facing society are not going to be resolved solely through improvements in scientific understanding. Many water challenges lie at the intersection between pure science and applied science, or between the sciences and economics and policy. Any effort to summarize future needs must therefore also acknowledge the urgent need to improve our understanding of how humans are increasingly influencing and changing the hydrologic cycle and the ultimate consequences of those changes for societal well-being. Such efforts would be greatly enhanced by interdisciplinary research and policy efforts involving the scientific community and a broader range of engineers, economists, utility managers, irrigators, and local communities. For example, as one measure of the recognition of these challenges, the Hydrology Section of the American Geophysical Union has just constituted a new Technical Committee on Water and Society to broaden the issues addressed by AGU members and to develop alternative paths - including "soft paths" to addressing a wide range of water-related challenges.

Mississippi Basin Carbon Project science plan

USGS Publications Warehouse

Sundquist, E.T.; Stallard, R.F.; Bliss, N.B.; Markewich, H.W.; Harden, J.W.; Pavich, M.J.; Dean, M.D.

1998-01-01

Understanding the carbon cycle is one of the most difficult challenges facing scientists who study the global environment. Lack of understanding of global carbon cycling is perhaps best illustrated by our inability to balance the present-day global CO2 budget. The amount of CO2 produced by burning fossil fuels and by deforestation appears to exceed the amount accumulating in the atmosphere and oceans. The carbon needed to balance the CO2 budget (the so-called "missing" carbon) is probably absorbed by land plants and ultimately deposited in soils and sediments. Increasing evidence points toward the importance of these terrestrial processes in northern temperate latitudes. Thus, efforts to balance the global CO2 budget focus particular attention on terrestrial carbon uptake in our own North American "backyard."The USGS Mississippi Basin Carbon Project conducts research on the carbon budget in soils and sediments of the Mississippi River basin. The project focuses on the effects of land-use change on carbon storage and transport, nutrient cycles, and erosion and sedimentation throughout the Mississippi River Basin. Particular emphasis is placed on understanding the interactions among changes in erosion, sedimentation, and soil dynamics. The project includes spatial analysis of a wide variety of geographic data sets, estimation of whole-basin and sub-basin carbon and sediment budgets, development and implementation of terrestrial carbon-cycle models, and site-specific field studies of relevant processes. The USGS views this project as a "flagship" effort to demonstrate its capabilities to address the importance of the land surface to biogeochemical problems such as the global carbon budget.

The microbial nitrogen-cycling network.

PubMed

Kuypers, Marcel M M; Marchant, Hannah K; Kartal, Boran

2018-05-01

Nitrogen is an essential component of all living organisms and the main nutrient limiting life on our planet. By far, the largest inventory of freely accessible nitrogen is atmospheric dinitrogen, but most organisms rely on more bioavailable forms of nitrogen, such as ammonium and nitrate, for growth. The availability of these substrates depends on diverse nitrogen-transforming reactions that are carried out by complex networks of metabolically versatile microorganisms. In this Review, we summarize our current understanding of the microbial nitrogen-cycling network, including novel processes, their underlying biochemical pathways, the involved microorganisms, their environmental importance and industrial applications.

Review of capital investment in economic growth cycle

NASA Astrophysics Data System (ADS)

Shaffie, Siti Salihah; Jaaman, Saiful Hafizah; Mohamad, Daud

2016-11-01

The study of linkages of macroeconomics factors is prominent in order to understand how the economic cycle affects one another. These factors include interest rate, growth rate, saving and capital investment which are mutually correlated to stabilize the GDP. Part of this study, it will look upon the impact of investment which emphasize the efficiency of capital investment to the economic growth. Capital investment is one investment appraisal that gives impact to the economic growth. It is a long term investment and involve with large amount of capital to incorporate the development of private and public capital investment.

Ocean Salinity Variance and the Global Water Cycle.

NASA Astrophysics Data System (ADS)

Schmitt, R. W.

2012-12-01

Ocean salinity variance is increasing and appears to be an indicator of rapid change in the global water cycle. While the small terrestrial water cycle does not reveal distinct trends, in part due to strong manipulation by civilization, the much larger oceanic water cycle seems to have an excellent proxy for its intensity in the contrasts in sea surface salinity (SSS). Change in the water cycle is arguably the most important challenge facing mankind. But how well do we understand the oceanic response? Does the ocean amplify SSS change to make it a hyper-sensitive indicator of change in the global water cycle? An overview of the research challenges to the oceanographic community for understanding the dominant component of the global water cycle is provided.

Armed conflict: a model for understanding and intervention.

PubMed

2013-01-01

Acts of deadly violence give rise to powerful emotions and trigger pre-programmed responses that often cause affected persons, including leaders, media, armed forces, and the general public, to act in ways that aggravate the situation and feed into cycles of violence. In this article, a model of the cycle of violence is presented that facilitates logical analysis and response. Starting from an act of deadly violence this model traces a series of interacting factors that can lead to armed conflict. These include distortions of perception and response that impact the public and their leaders. Negative codes, prejudices, and myths feed fear and grief which may then escalate and lead to violent retaliation thereby triggering a similar response. Those professionals who care for bereaved individuals and families are familiar with these emotions and responses and are well qualified to analyze, explain, and support people affected by armed conflict. We suggest that they could also play educational and other important roles in reducing escalation and breaking the cycle of violence.

Dryland responses to global change suggest the potential for rapid non-linear responses to some changes but resilience to others

NASA Astrophysics Data System (ADS)

Reed, S.; Ferrenberg, S.; Tucker, C.; Rutherford, W. A.; Wertin, T. M.; McHugh, T. A.; Morrissey, E.; Kuske, C.; Belnap, J.

2017-12-01

Drylands represent our planet's largest terrestrial biome, making up over 35% of Earth's land surface. In the context of this vast areal extent, it is no surprise that recent research suggests dryland inter-annual variability and responses to change have the potential to drive biogeochemical cycles and climate at the global-scale. Further, the data we do have suggest drylands can respond rapidly and non-linearly to change. Nevertheless, our understanding of the cross-system consistency of and mechanisms behind dryland responses to a changed environment remains relatively poor. This poor understanding hinders not only our larger understanding of terrestrial ecosystem function, but also our capacity to forecast future global biogeochemical cycles and climate. Here we present data from a series of Colorado Plateau manipulation experiments - including climate, land use, and nitrogen deposition manipulations - to explore how vascular plants, microbial communities, and biological soil crusts (a community of mosses, lichens, and/or cyanobacteria living in the interspace among vascular plants in arid and semiarid ecosystems worldwide) respond to a host of environmental changes. These responses include not only assessments of community composition, but of their function as well. We will explore photosynthesis, net soil CO2 exchange, soil carbon stocks and chemistry, albedo, and nutrient cycling. The experiments were begun with independent questions and cover a range of environmental change drivers and scientific approaches, but together offer a relatively holistic picture of how some drylands can change their structure and function in response to change. In particular, the data show very high ecosystem vulnerability to particular drivers, but surprising resilience to others, suggesting a multi-faceted response of these diverse systems.

Human papillomavirus molecular biology and disease association

PubMed Central

Egawa, Nagayasu; Griffin, Heather; Kranjec, Christian; Murakami, Isao

2015-01-01

Summary Human papillomaviruses (HPVs) have evolved over millions of years to propagate themselves in a range of different animal species including humans. Viruses that have co‐evolved slowly in this way typically cause chronic inapparent infections, with virion production in the absence of apparent disease. This is the case for many Beta and Gamma HPV types. The Alpha papillomavirus types have however evolved immunoevasion strategies that allow them to cause persistent visible papillomas. These viruses activate the cell cycle as the infected epithelial cell differentiates in order to create a replication competent environment that allows viral genome amplification and packaging into infectious particles. This is mediated by the viral E6, E7, and E5 proteins. High‐risk E6 and E7 proteins differ from their low‐risk counterparts however in being able to drive cell cycle entry in the upper epithelial layers and also to stimulate cell proliferation in the basal and parabasal layers. Deregulated expression of these cell cycle regulators underlies neoplasia and the eventual progression to cancer in individuals who cannot resolve high‐risk HPV infection. Most work to date has focused on the study of high‐risk HPV types such as HPV 16 and 18, which has led to an understanding of the molecular pathways subverted by these viruses. Such approaches will lead to the development of better strategies for disease treatment, including targeted antivirals and immunotherapeutics. Priorities are now focused toward understanding HPV neoplasias at sites other than the cervix (e.g. tonsils, other transformation zones) and toward understanding the mechanisms by which low‐risk HPV types can sometimes give rise to papillomatosis and under certain situations even cancers. Copyright © 2015 John Wiley & Sons, Ltd. PMID:25752814

Cell cycle pathway dysregulation in human keratinocytes during chronic exposure to low arsenite.

PubMed

Al-Eryani, Laila; Waigel, Sabine; Jala, Venkatakrishna; Jenkins, Samantha F; States, J Christopher

2017-09-15

Arsenic is naturally prevalent in the earth's crust and widely distributed in air and water. Chronic low arsenic exposure is associated with several cancers in vivo, including skin cancer, and with transformation in vitro of cell lines including immortalized human keratinocytes (HaCaT). Arsenic also is associated with cell cycle dysregulation at different exposure levels in multiple cell lines. In this work, we analyzed gene expression in HaCaT cells to gain an understanding of gene expression changes contributing to transformation at an early time point. HaCaT cells were exposed to 0 or 100nM NaAsO 2 for 7weeks. Total RNA was purified and analyzed by microarray hybridization. Differential expression with fold change≥|1.5| and p-value≤0.05 was determined using Partek Genomic Suite™ and pathway and network analyses using MetaCore™ software (FDR≤0.05). Cell cycle analysis was performed using flow cytometry. 644 mRNAs were differentially expressed. Cell cycle/cell cycle regulation pathways predominated in the list of dysregulated pathways. Genes involved in replication origin licensing were enriched in the network. Cell cycle assay analysis showed an increase in G2/M compartment in arsenite-exposed cells. Arsenite exposure induced differential gene expression indicating dysregulation of cell cycle control, which was confirmed by cell cycle analysis. The results suggest that cell cycle dysregulation is an early event in transformation manifested in cells unable to transit G2/M efficiently. Further study at later time points will reveal additional changes in gene expression related to transformation processes. Copyright © 2017 Elsevier Inc. All rights reserved.

The Heliosphere Through the Solar Activity Cycle

NASA Technical Reports Server (NTRS)

Balogh, A.; Lanzerotti, L. J.; Suess, S. T.

2006-01-01

Understanding how the Sun changes though its 11-year sunspot cycle and how these changes affect the vast space around the Sun the heliosphere has been one of the principal objectives of space research since the advent of the space age. This book presents the evolution of the heliosphere through an entire solar activity cycle. The last solar cycle (cycle 23) has been the best observed from both the Earth and from a fleet of spacecraft. Of these, the joint ESA-NASA Ulysses probe has provided continuous observations of the state of the heliosphere since 1990 from a unique vantage point, that of a nearly polar orbit around the Sun. Ulysses results affect our understanding of the heliosphere from the interior of the Sun to the interstellar medium - beyond the outer boundary of the heliosphere. Written by scientists closely associated with the Ulysses mission, the book describes and explains the many different aspects of changes in the heliosphere in response to solar activity. In particular, the authors describe the rise in solar ESA and NASA have now unamiously agreed a third extension to operate the highly successful Ulysses spacecraft until March 2008 and, in 2007 and 2008, the European-built space probe will fly over the poles of the Sun for a third time. This will enable Ulysses to add an important chapter to its survey of the high-latitude heliosphere and this additional material would be included in a 2nd edition of this book.

The influence of photoperiod and temperature on the Neosho Madtom (norturus placidus) reproductive cycle

USGS Publications Warehouse

Albers, J.L.; Wildhaber, M.L.; Noltie, Douglas B.

2001-01-01

The key to successful fish culture is to understand the environmental cues that trigger spawning. In temperate fishes, photoperiod and temperature are important in many species including the family Ictaluridae. The object of this study was to examine whether natural photo-thermal conditions in the laboratory could stimulate the reproductive cycle of Neosho madtoms (Noturus placidus). For three years a small population of Neosho madtoms were maintained under natural conditions and continually sampled using ultrasound to examine interior gonad state and exterior body measurements. The purpose was to examine the secondary sexual characteristics that normally occur during the spawning period. Every year the fish cycled in and out of spawning condition, including production and reabsorbtion of eggs. The best external measurement found to distinguish between sexes was the ratio of head length to total length. Internal measurements found the average number of eggs per female increased as the fish length increased and over time but the average sizes of the eggs were constant. After years in the simulated environment 13 different fish were involved in ten spawns. The use of ultrasound to examine gonad in madtoms is promising, especially the lack of injury associated with the procedure. Overall laboratory conditions that simulated the natural photo-thermal environment, especially daily temperature fluctuations, were successful at stimulating the reproductive cycle of Neosho madtoms including egg cycling and spawning. These results show promise towards culture of madtoms especially for those species that are rare and endangered.

Nutrients in estuaries--an overview and the potential impacts of climate change.

PubMed

Statham, Peter J

2012-09-15

The fate and cycling of macronutrients introduced into estuaries depend upon a range of interlinked processes. Hydrodynamics and morphology in combination with freshwater inflow control the freshwater flushing time, and the timescale for biogeochemical processes to operate that include microbial activity, particle-dissolved phase interactions, and benthic exchanges. In some systems atmospheric inputs and exchanges with coastal waters can also be important. Climate change will affect nutrient inputs and behaviour through modifications to temperature, wind patterns, the hydrological cycle, and sea level rise. Resulting impacts include: 1) inundation of freshwater systems 2) changes in stratification, flushing times and phytoplankton productivity 3) increased coastal storm activity 4) changes in species and ecosystem function. A combination of continuing high inputs of nutrients through human activity and climate change is anticipated to lead to enhanced eutrophication in the future. The most obvious impacts of increasing global temperature will be in sub-arctic systems where permafrost zones will be reduced in combination with enhanced inputs from glacial systems. Improved process understanding in several key areas including cycling of organic N and P, benthic exchanges, resuspension, impact of bio-irrigation, particle interactions, submarine groundwater discharges, and rates and magnitude of bacterially-driven recycling processes, is needed. Development of high frequency in situ nutrient analysis systems will provide data to improve predictive models that need to incorporate a wider variety of key factors, although the complexity of estuarine systems makes such modelling a challenge. However, overall a more holistic approach is needed to effectively understand, predict and manage the impact of macronutrients on estuaries. Copyright © 2011 Elsevier B.V. All rights reserved.

Checks and balances? DNA replication and the cell cycle in Plasmodium.

PubMed

Matthews, Holly; Duffy, Craig W; Merrick, Catherine J

2018-03-27

It is over 100 years since the life-cycle of the malaria parasite Plasmodium was discovered, yet its intricacies remain incompletely understood - a knowledge gap that may prove crucial for our efforts to control the disease. Phenotypic screens have partially filled the void in the antimalarial drug market, but as compound libraries eventually become exhausted, new medicines will only come from directed drug development based on a better understanding of fundamental parasite biology. This review focusses on the unusual cell cycles of Plasmodium, which may present a rich source of novel drug targets as well as a topic of fundamental biological interest. Plasmodium does not grow by conventional binary fission, but rather by several syncytial modes of replication including schizogony and sporogony. Here, we collate what is known about the various cell cycle events and their regulators throughout the Plasmodium life-cycle, highlighting the differences between Plasmodium, model organisms and other apicomplexan parasites and identifying areas where further study is required. The possibility of DNA replication and the cell cycle as a drug target is also explored. Finally the use of existing tools, emerging technologies, their limitations and future directions to elucidate the peculiarities of the Plasmodium cell cycle are discussed.

Helping secondary school students develop a conceptual understanding of refraction

NASA Astrophysics Data System (ADS)

Ashmann, Scott; Anderson, Charles W.; Boeckman, Heather

2016-07-01

Using real-world examples, ray diagrams, and a cognitive apprenticeship cycle, this paper focuses on developing students’ conceptual (not mathematical) understanding of refraction. Refraction can be a difficult concept for students to comprehend if they do not have well-designed opportunities to practice explaining situations where reflection and refraction occur. The use of ray diagrams can be useful in (a) the teacher modelling a correct explanation to a situation where refraction occurs and (b) for students to create as they practice other examples. This paper includes eight examples of increasing complexity that use a cognitive apprenticeship cycle approach to scaffold student learning. The first examples (rock fish, floating penny) are shown and a solution is modeled using a ray diagram. Three more examples (bent pencil, dropping an item in water, sunrise/sunset) are presented for students to practice, with each becoming more sophisticated. Three assessment exercises are then provided (two dots, three coins, broken tube).

2010 MARINE MICROBES GORDON RESEARCH CONFERENCE (JULY 4-9, 2010 - TILTON SCHOOL, TILTON NH)

DOE Office of Scientific and Technical Information (OSTI.GOV)

David Kirchman

Marine microbes include representatives from all three kingdoms of life and collectively carry out virtually all forms of metabolisms found on the planet. Because of this metabolic and genetic diversity, these microbes mediate many of the reactions making up global biogeochemical cycles which govern the flow of energy and material in the biosphere. The goal of this conference is to bring together approaches and concepts from studies of microbial evolution, genomics, ecology, and oceanography in order to gain new insights into marine microbes and their biogeochemical functions. The integration of scales, from genes to global cycles, will result in amore » better understanding of marine microbes and of their contribution to the carbon cycle and other biogeochemical processes.« less

Aortic root dynamics and surgery: from craft to science.

PubMed

Cheng, Allen; Dagum, Paul; Miller, D Craig

2007-08-29

Since the fifteenth century beginning with Leonardo da Vinci's studies, the precise structure and functional dynamics of the aortic root throughout the cardiac cycle continues to elude investigators. The last five decades of experimental work have contributed substantially to our current understanding of aortic root dynamics. In this article, we review and summarize the relevant structural analyses, using radiopaque markers and sonomicrometric crystals, concerning aortic root three-dimensional deformations and describe aortic root dynamics in detail throughout the cardiac cycle. We then compare data between different studies and discuss the mechanisms responsible for the modes of aortic root deformation, including the haemodynamics, anatomical and temporal determinants of those deformations. These modes of aortic root deformation are closely coupled to maximize ejection, optimize transvalvular ejection haemodynamics and-perhaps most importantly-reduce stress on the aortic valve cusps by optimal diastolic load sharing and minimizing transvalvular turbulence throughout the cardiac cycle. This more comprehensive understanding of aortic root mechanics and physiology will contribute to improved medical and surgical treatment methods, enhanced therapeutic decision making and better post-intervention care of patients. With a better understanding of aortic root physiology, future research on aortic valve repair and replacement should take into account the integrated structural and functional asymmetry of aortic root dynamics to minimize stress on the aortic cusps in order to prevent premature structural valve deterioration.

Adding the Third Dimension to Virus Life Cycles: Three-Dimensional Reconstruction of Icosahedral Viruses from Cryo-Electron Micrographs

PubMed Central

Baker, T. S.; Olson, N. H.; Fuller, S. D.

1999-01-01

Viruses are cellular parasites. The linkage between viral and host functions makes the study of a viral life cycle an important key to cellular functions. A deeper understanding of many aspects of viral life cycles has emerged from coordinated molecular and structural studies carried out with a wide range of viral pathogens. Structural studies of viruses by means of cryo-electron microscopy and three-dimensional image reconstruction methods have grown explosively in the last decade. Here we review the use of cryo-electron microscopy for the determination of the structures of a number of icosahedral viruses. These studies span more than 20 virus families. Representative examples illustrate the use of moderate- to low-resolution (7- to 35-Å) structural analyses to illuminate functional aspects of viral life cycles including host recognition, viral attachment, entry, genome release, viral transcription, translation, proassembly, maturation, release, and transmission, as well as mechanisms of host defense. The success of cryo-electron microscopy in combination with three-dimensional image reconstruction for icosahedral viruses provides a firm foundation for future explorations of more-complex viral pathogens, including the vast number that are nonspherical or nonsymmetrical. PMID:10585969

Generation separation in simple structured life cycles: models and 48 years of field data on a tea tortrix moth.

PubMed

Yamanaka, Takehiko; Nelson, William A; Uchimura, Koichiro; Bjørnstad, Ottar N

2012-01-01

Population cycles have fascinated ecologists since the early nineteenth century, and the dynamics of insect populations have been central to understanding the intrinsic and extrinsic biological processes responsible for these cycles. We analyzed an extraordinary long-term data set (every 5 days for 48 years) of a tea tortrix moth (Adoxophyes honmai) that exhibits two dominant cycles: an annual cycle with a conspicuous pattern of four or five single-generation cycles superimposed on it. General theory offers several candidate mechanisms for generation cycles. To evaluate these, we construct and parameterize a series of temperature-dependent, stage-structured models that include intraspecific competition, parasitism, mate-finding Allee effects, and adult senescence, all in the context of a seasonal environment. By comparing the observed dynamics with predictions from the models, we find that even weak larval competition in the presence of seasonal temperature forcing predicts the two cycles accurately. None of the other mechanisms predicts the dynamics. Detailed dissection of the results shows that a short reproductive life span and differential winter mortality among stages are the additional life-cycle characteristics that permit the sustained cycles. Our general modeling approach is applicable to a wide range of organisms with temperature-dependent life histories and is likely to prove particularly useful in temperate systems where insect pest outbreaks are both density and temperature dependent. © 2011 by The University of Chicago.

Recognition of Time Stamps on Full-Disk Hα Images Using Machine Learning Methods

NASA Astrophysics Data System (ADS)

Xu, Y.; Huang, N.; Jing, J.; Liu, C.; Wang, H.; Fu, G.

2016-12-01

Observation and understanding of the physics of the 11-year solar activity cycle and 22-year magnetic cycle are among the most important research topics in solar physics. The solar cycle is responsible for magnetic field and particle fluctuation in the near-earth environment that have been found increasingly important in affecting the living of human beings in the modern era. A systematic study of large-scale solar activities, as made possible by our rich data archive, will further help us to understand the global-scale magnetic fields that are closely related to solar cycles. The long-time-span data archive includes both full-disk and high-resolution Hα images. Prior to the widely use of CCD cameras in 1990s, 35-mm films were the major media to store images. The research group at NJIT recently finished the digitization of film data obtained by the National Solar Observatory (NSO) and Big Bear Solar Observatory (BBSO) covering the period of 1953 to 2000. The total volume of data exceeds 60 TB. To make this huge database scientific valuable, some processing and calibration are required. One of the most important steps is to read the time stamps on all of the 14 million images, which is almost impossible to be done manually. We implemented three different methods to recognize the time stamps automatically, including Optical Character Recognition (OCR), Classification Tree and TensorFlow. The latter two are known as machine learning algorithms which are very popular now a day in pattern recognition area. We will present some sample images and the results of clock recognition from all three methods.

Using model analyses and surface-atmosphere exchange measurements from the Howland AmeriFlux Site in Maine, USA, to improve understanding of forest ecosystem C cycling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hollinger, David Y.; Davidson, Eric A.; Richardson, Andrew D.

2013-03-25

Summary of research carried out under Interagency Agreement DE-AI02-07ER64355 with the USDA Forest Service at the Howland Forest AmeriFlux site in central Maine. Includes a list of publications resulting in part or whole from this support.

Towards a Reflection Repertoire: Using a Thinking Tool to Understand Tensions in an Action Research Project

ERIC Educational Resources Information Center

Aas, Marit

2014-01-01

Most action researchers agree that action research consists of cycles of planning, acting, reflecting, and taking further action. However, in action research literature, there is something missing. The nature of reflection in the action research process, including its relationship with the tensions that arise while discussing purposes, processes,…

Framing Prospective Elementary Teachers' Conceptions of Dissolving as a Ladder of Explanations

ERIC Educational Resources Information Center

Subramaniam, Karthigeyan; Esprivalo Harrell, Pamela

2013-01-01

The paper details an exploratory qualitative study that investigated 61 prospective teachers' conceptual understanding of dissolving salt and sugar in water respectively. The study was set within a 15-week elementary science methods course that included a 5E learning cycle lesson on dissolving, the instructional context. Oversby's…

Pathological implications of cell cycle re-entry in Alzheimer disease.

PubMed

Bonda, David J; Lee, Hyun-pil; Kudo, Wataru; Zhu, Xiongwei; Smith, Mark A; Lee, Hyoung-gon

2010-06-29

The complex neurodegeneration underlying Alzheimer disease (AD), although incompletely understood, is characterised by an aberrant re-entry into the cell cycle in neurons. Pathological evidence, in the form of cell cycle markers and regulatory proteins, suggests that cell cycle re-entry is an early event in AD, which precedes the formation of amyloid-beta plaques and neurofibrillary tangles (NFTs). Although the exact mechanisms that induce and mediate these cell cycle events in AD are not clear, significant advances have been made in further understanding the pathological role of cell cycle re-entry in AD. Importantly, recent studies indicate that cell cycle re-entry is not a consequence, but rather a cause, of neurodegeneration, suggesting that targeting of cell cycle re-entry may provide an opportunity for therapeutic intervention. Moreover, multiple inducers of cell cycle re-entry and their interactions in AD have been proposed. Here, we review the most recent advances in understanding the pathological implications of cell cycle re-entry in AD.

Structural and Functional Studies of Archaeal Viruses*

PubMed Central

Lawrence, C. Martin; Menon, Smita; Eilers, Brian J.; Bothner, Brian; Khayat, Reza; Douglas, Trevor; Young, Mark J.

2009-01-01

Viruses populate virtually every ecosystem on the planet, including the extreme acidic, thermal, and saline environments where archaeal organisms can dominate. For example, recent studies have identified crenarchaeal viruses in the hot springs of Yellowstone National Park and other high temperature environments worldwide. These viruses are often morphologically and genetically unique, with genomes that show little similarity to genes of known function, complicating efforts to understand their viral life cycles. Here, we review progress in understanding these fascinating viruses at the molecular level and the evolutionary insights coming from these studies. PMID:19158076

Terrestrial nitrogen cycling in Earth system models revisited

USGS Publications Warehouse

Stocker, Benjamin D; Prentice, I. Colin; Cornell, Sarah; Davies-Barnard, T; Finzi, Adrien; Franklin, Oskar; Janssens, Ivan; Larmola, Tuula; Manzoni, Stefano; Näsholm, Torgny; Raven, John; Rebel, Karin; Reed, Sasha C.; Vicca, Sara; Wiltshire, Andy; Zaehle, Sönke

2016-01-01

Understanding the degree to which nitrogen (N) availability limits land carbon (C) uptake under global environmental change represents an unresolved challenge. First-generation ‘C-only’vegetation models, lacking explicit representations of N cycling,projected a substantial and increasing land C sink under rising atmospheric CO2 concentrations. This prediction was questioned for not taking into account the potentially limiting effect of N availability, which is necessary for plant growth (Hungate et al.,2003). More recent global models include coupled C and N cycles in land ecosystems (C–N models) and are widely assumed to be more realistic. However, inclusion of more processes has not consistently improved their performance in capturing observed responses of the global C cycle (e.g. Wenzel et al., 2014). With the advent of a new generation of global models, including coupled C, N, and phosphorus (P) cycling, model complexity is sure to increase; but model reliability may not, unless greater attention is paid to the correspondence of model process representations ande mpirical evidence. It was in this context that the ‘Nitrogen Cycle Workshop’ at Dartington Hall, Devon, UK was held on 1–5 February 2016. Organized by I. Colin Prentice and Benjamin D. Stocker (Imperial College London, UK), the workshop was funded by the European Research Council,project ‘Earth system Model Bias Reduction and assessing Abrupt Climate change’ (EMBRACE). We gathered empirical ecologists and ecosystem modellers to identify key uncertainties in terrestrial C–N cycling, and to discuss processes that are missing or poorly represented in current models.

A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.

PubMed

Mayhew, Michael B; Robinson, Joshua W; Jung, Boyoun; Haase, Steven B; Hartemink, Alexander J

2011-07-01

To advance understanding of eukaryotic cell division, it is important to observe the process precisely. To this end, researchers monitor changes in dividing cells as they traverse the cell cycle, with the presence or absence of morphological or genetic markers indicating a cell's position in a particular interval of the cell cycle. A wide variety of marker data is available, including information-rich cellular imaging data. However, few formal statistical methods have been developed to use these valuable data sources in estimating how a population of cells progresses through the cell cycle. Furthermore, existing methods are designed to handle only a single binary marker of cell cycle progression at a time. Consequently, they cannot facilitate comparison of experiments involving different sets of markers. Here, we develop a new sampling model to accommodate an arbitrary number of different binary markers that characterize the progression of a population of dividing cells along a branching process. We engineer a strain of Saccharomyces cerevisiae with fluorescently labeled markers of cell cycle progression, and apply our new model to two image datasets we collected from the strain, as well as an independent dataset of different markers. We use our model to estimate the duration of post-cytokinetic attachment between a S.cerevisiae mother and daughter cell. The Java implementation is fast and extensible, and includes a graphical user interface. Our model provides a powerful and flexible cell cycle analysis tool, suitable to any type or combination of binary markers. The software is available from: http://www.cs.duke.edu/~amink/software/cloccs/. michael.mayhew@duke.edu; amink@cs.duke.edu.

Soil Functional Mapping: A Geospatial Framework for Scaling Soil Carbon Cycling

NASA Astrophysics Data System (ADS)

Lawrence, C. R.

2017-12-01

Climate change is dramatically altering biogeochemical cycles in most terrestrial ecosystems, particularly the cycles of water and carbon (C). These changes will affect myriad ecosystem processes of importance, including plant productivity, C exports to aquatic systems, and terrestrial C storage. Soil C storage represents a critical feedback to climate change as soils store more C than the atmosphere and aboveground plant biomass combined. While we know plant and soil C cycling are strongly coupled with soil moisture, substantial unknowns remain regarding how these relationships can be scaled up from soil profiles to ecosystems. This greatly limits our ability to build a process-based understanding of the controls on and consequences of climate change at regional scales. In an effort to address this limitation we: (1) describe an approach to classifying soils that is based on underlying differences in soil functional characteristics and (2) examine the utility of this approach as a scaling tool that honors the underlying soil processes. First, geospatial datasets are analyzed in the context of our current understanding of soil C and water cycling in order to predict soil functional units that can be mapped at the scale of ecosystems or watersheds. Next, the integrity of each soil functional unit is evaluated using available soil C data and mapping units are refined as needed. Finally, targeted sampling is conducted to further differentiate functional units or fill in any data gaps that are identified. Completion of this workflow provides new geospatial datasets that are based on specific soil functions, in this case the coupling of soil C and water cycling, and are well suited for integration with regional-scale soil models. Preliminary results from this effort highlight the advantages of a scaling approach that balances theory, measurement, and modeling.

Evaluation of Daphnid Grazing on Microscopic Zoosporic Fungi by Using Comparative Threshold Cycle Quantitative PCR

PubMed Central

Maier, Michelle A.; Uchii, Kimiko; Peterson, Tawnya D.

2016-01-01

ABSTRACT Lethal parasitism of large phytoplankton by chytrids (microscopic zoosporic fungi) may play an important role in organic matter and nutrient cycling in aquatic environments by shunting carbon away from hosts and into much smaller zoospores, which are more readily consumed by zooplankton. This pathway provides a mechanism to more efficiently retain carbon within food webs and reduce export losses. However, challenges in accurate identification and quantification of chytrids have prevented a robust assessment of the relative importance of parasitism for carbon and energy flows within aquatic systems. The use of molecular techniques has greatly advanced our ability to detect small, nondescript microorganisms in aquatic environments in recent years, including chytrids. We used quantitative PCR (qPCR) to quantify the consumption of zoospores by Daphnia in laboratory experiments using a culture-based comparative threshold cycle (CT) method. We successfully quantified the reduction of zoospores in water samples during Daphnia grazing and confirmed the presence of chytrid DNA inside the daphnid gut. We demonstrate that comparative CT qPCR is a robust and effective method to quantify zoospores and evaluate zoospore grazing by zooplankton and will aid in better understanding how chytrids contribute to organic matter cycling and trophic energy transfer within food webs. IMPORTANCE The study of aquatic fungi is often complicated by the fact that they possess complex life cycles that include a variety of morphological forms. Studies that rely on morphological characteristics to quantify the abundances of all stages of the fungal life cycle face the challenge of correctly identifying and enumerating the nondescript zoospores. These zoospores, however, provide an important trophic link between large colonial phytoplankton and zooplankton: that is, once the carbon is liberated from phytoplankton into the parasitic zoospores, the latter are consumed by zooplankton and carbon is retained in the aquatic food web rather than exported from the system. This study provides a tool to quantify zoospores and evaluate the consumption of zoospores by zooplankton in order to further our understanding of their role in food web dynamics. PMID:27107112

Evaluation of Daphnid Grazing on Microscopic Zoosporic Fungi by Using Comparative Threshold Cycle Quantitative PCR.

PubMed

Maier, Michelle A; Uchii, Kimiko; Peterson, Tawnya D; Kagami, Maiko

2016-07-01

Lethal parasitism of large phytoplankton by chytrids (microscopic zoosporic fungi) may play an important role in organic matter and nutrient cycling in aquatic environments by shunting carbon away from hosts and into much smaller zoospores, which are more readily consumed by zooplankton. This pathway provides a mechanism to more efficiently retain carbon within food webs and reduce export losses. However, challenges in accurate identification and quantification of chytrids have prevented a robust assessment of the relative importance of parasitism for carbon and energy flows within aquatic systems. The use of molecular techniques has greatly advanced our ability to detect small, nondescript microorganisms in aquatic environments in recent years, including chytrids. We used quantitative PCR (qPCR) to quantify the consumption of zoospores by Daphnia in laboratory experiments using a culture-based comparative threshold cycle (CT) method. We successfully quantified the reduction of zoospores in water samples during Daphnia grazing and confirmed the presence of chytrid DNA inside the daphnid gut. We demonstrate that comparative CT qPCR is a robust and effective method to quantify zoospores and evaluate zoospore grazing by zooplankton and will aid in better understanding how chytrids contribute to organic matter cycling and trophic energy transfer within food webs. The study of aquatic fungi is often complicated by the fact that they possess complex life cycles that include a variety of morphological forms. Studies that rely on morphological characteristics to quantify the abundances of all stages of the fungal life cycle face the challenge of correctly identifying and enumerating the nondescript zoospores. These zoospores, however, provide an important trophic link between large colonial phytoplankton and zooplankton: that is, once the carbon is liberated from phytoplankton into the parasitic zoospores, the latter are consumed by zooplankton and carbon is retained in the aquatic food web rather than exported from the system. This study provides a tool to quantify zoospores and evaluate the consumption of zoospores by zooplankton in order to further our understanding of their role in food web dynamics. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Perchlorate in the Hydrologic Cycle - An Overview of Sources and Occurrence

NASA Astrophysics Data System (ADS)

Stonestrom, D. A.; Jackson, W.; Mayer, K.; Orris, G. J.

2007-12-01

Perchlorate (ClO4-) in water and food is of concern due to deleterious health affects associated with hypothyroidism. The presence of widespread perchlorate in 0-to-28 ka-old pristine ground water of the Middle Rio Grande Basin (Plummer et al., 2006, ES&T, DOI:10.1021/es051739h), in ground water >1 mile from agricultural activities in the Southern High Plains (Rajagapolan et al., 2006, ES&T, DOI:10.1021/es052155i), and in unsaturated zones throughout the arid and semiarid southwestern United States (Rao et al., 2007, ES&T, DOI:10.1021/es062853i) clearly indicates that perchlorate is a non-exotic component of the hydrologic cycle, at least in dry environments. The natural system has been greatly perturbed in places by human activities. Most anthropogenic inputs are associated with the manufacture and use of explosives and rocket fuel, providing concentrated sources of excess perchlorate to the hydrologic cycle. Perchlorate-containing fertilizers and irrigation provide dispersed sources within and down-gradient from agricultural areas. Natural sources include photochemically mediated reactions involving ozone at the land surface and in the lower atmosphere. A growing body of work indicates that a small, but persistent, meteoric source acting over thousands of years can explain observed accumulations of unsaturated-zone perchlorate in arid regions. In addition to meteoric sources, oxyanions produced during volcanogenic processes can include appreciable amounts of natural perchlorate. Terrestrial plants take up perchlorate in soil water, with some species of xerophytic succulents concentrating the anion to high levels. Similarly, perchlorate in marine plants indicates that perchlorate is part of marine biochemical cycles. Perchlorate-bearing marine sediments of late Tertiary age suggest that perchlorate has been part of global geochemical cycles for millions of years and, furthermore, can be preserved in the subsurface despite the nearly ubiquitous presence of perchlorate-reducing bacteria in natural environments. New methods involving various combinations of ion chromatography, mass spectroscopy, and molecular biology are providing improved tools for understanding perchlorate in natural and perturbed systems. With large-scale sampling underway, a better understanding of the sources, sinks, and transformations of perchlorate in the hydrologic cycle is starting to emerge.

Diel biogeochemical processes in terrestrial waters

USGS Publications Warehouse

Nimick, David A.; Gammons, Christopher H.

2011-01-01

Many biogeochemical processes in rivers and lakes respond to the solar photocycle and produce persistent patterns of measureable phenomena that exhibit a day–night, or 24-h, cycle. Despite a large body of recent literature, the mechanisms responsible for these diel fluctuations are widely debated, with a growing consensus that combinations of physical, chemical, and biological processes are involved. These processes include streamflow variation, photosynthesis and respiration, plant assimilation, and reactions involving photochemistry, adsorption and desorption, and mineral precipitation and dissolution. Diel changes in streamflow and water properties such as temperature, pH, and dissolved oxygen concentration have been widely recognized, and recently, diel studies have focused more widely by considering other constituents such as dissolved and particulate trace metals, metalloids, rare earth elements, mercury, organic matter, dissolved inorganic carbon (DIC), and nutrients. The details of many diel processes are being studied using stable isotopes, which also can exhibit diel cycles in response to microbial metabolism, photosynthesis and respiration, or changes in phase, speciation, or redox state. In addition, secondary effects that diel cycles might have, for example, on biota or in the hyporheic zone are beginning to be considered.This special issue is composed primarily of papers presented at the topical session “Diurnal Biogeochemical Processes in Rivers, Lakes, and Shallow Groundwater” held at the annual meeting of the Geological Society of America in October 2009 in Portland, Oregon. This session was organized because many of the growing number of diel studies have addressed just a small part of the full range of diel cycling phenomena found in rivers and lakes. This limited focus is understandable because (1) fundamental aspects of many diel processes are poorly understood and require detailed study, (2) the interests and expertise of individual scientists typically do not encompass the wide diversity and range of processes that produce diel cycles, and (3) the logistics of making field measurements for 24-h periods has limited recognition and understanding of these important cycles. Thus, the topical session brought together hydrologists, biologists, geochemists, and ecologists to discuss field studies, laboratory experiments, theoretical modeling, and measurement techniques related to diel cycling. Hopefully with the cross-disciplinary synergy developed at the session as well as by this special issue, a more comprehensive understanding of the interrelationships between the diel processes will be developed. Needless to say, understanding diel processes is critical for regulatory agencies and the greater scientific community. And perhaps more importantly, expanded knowledge of biogeochemical cycling may lead to better predictions of how aquatic ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other variables.

Breakthroughs in the biogeochemistry of Nordic aquatic systems: Lessons from Water's Journey from Rain to Stream

NASA Astrophysics Data System (ADS)

Bishop, Kevin

2015-04-01

A sustainable society has been said to require knowledge of the limits placed by nature. Whatever one's views on the know-ability and significance of such limits, science strives to improve our understanding of these limiting factors, of which water is recognized to be one of the most important. Despite the centrality of water, the water cycle is maddeningly difficulty to pin down with the level of detail that is desired for resolving issues about the fate of pollutants, nutrient cycling and the global carbon balance, etc. But there is hope lurking in the Swedish landscape. The simplicity of hydrology in many Fennoscandian till soils, combined with applications of the only true tracers of water (isotopes of the water molecule) that were pioneered by Uppsala University hydrologists -provide a hydrological basis for breakthroughs in the biogeochemistry of critical earth support systems. This talk will explore some recent advances in understanding both pollutants and natural cycles, with linkages back to the concepts presented in the Water's Journey from Rain to Stream by Harald Grip and Allan Rodhe. The examples will include the mercury, acidity, and biogenic carbon of relevance to the "aquatic conduit" in the global carbon cycle. The talk will finish with thoughts about where to go next with the power that a well-characterized hydrology can provide.

Air impacts of increased natural gas acquisition, processing, and use: a critical review.

PubMed

Moore, Christopher W; Zielinska, Barbara; Pétron, Gabrielle; Jackson, Robert B

2014-01-01

During the past decade, technological advancements in the United States and Canada have led to rapid and intensive development of many unconventional natural gas plays (e.g., shale gas, tight sand gas, coal-bed methane), raising concerns about environmental impacts. Here, we summarize the current understanding of local and regional air quality impacts of natural gas extraction, production, and use. Air emissions from the natural gas life cycle include greenhouse gases, ozone precursors (volatile organic compounds and nitrogen oxides), air toxics, and particulates. National and state regulators primarily use generic emission inventories to assess the climate, air quality, and health impacts of natural gas systems. These inventories rely on limited, incomplete, and sometimes outdated emission factors and activity data, based on few measurements. We discuss case studies for specific air impacts grouped by natural gas life cycle segment, summarize the potential benefits of using natural gas over other fossil fuels, and examine national and state emission regulations pertaining to natural gas systems. Finally, we highlight specific gaps in scientific knowledge and suggest that substantial additional measurements of air emissions from the natural gas life cycle are essential to understanding the impacts and benefits of this resource.

Trophic Ecology of Benthic Marine Invertebrates with Bi-Phasic Life Cycles: What Are We Still Missing?

PubMed

Calado, Ricardo; Leal, Miguel Costa

2015-01-01

The study of trophic ecology of benthic marine invertebrates with bi-phasic life cycles is critical to understand the mechanisms shaping population dynamics. Moreover, global climate change is impacting the marine environment at an unprecedented level, which promotes trophic mismatches that affect the phenology of these species and, ultimately, act as drivers of ecological and evolutionary change. Assessing the trophic ecology of marine invertebrates is critical to understanding maternal investment, larval survival to metamorphosis, post-metamorphic performance, resource partitioning and trophic cascades. Tools already available to assess the trophic ecology of marine invertebrates, including visual observation, gut content analysis, food concentration, trophic markers, stable isotopes and molecular genetics, are reviewed and their main advantages and disadvantages for qualitative and quantitative approaches are discussed. The challenges to perform the partitioning of ingestion, digestion and assimilation are discussed together with different approaches to address each of these processes for short- and long-term fingerprinting. Future directions for research on the trophic ecology of benthic marine invertebrates with bi-phasic life cycles are discussed with emphasis on five guidelines that will allow for systematic study and comparative meta-analysis to address important unresolved questions. © 2015 Elsevier Ltd. All rights reserved.

Heavy-Duty Vehicle Port Drayage Drive Cycle Characterization and Development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prohaska, Robert; Konan, Arnaud; Kelly, Kenneth

In an effort to better understand the operational requirements of port drayage vehicles and their potential for adoption of advanced technologies, National Renewable Energy Laboratory (NREL) researchers collected over 36,000 miles of in-use duty cycle data from 30 Class 8 drayage trucks operating at the Port of Long Beach and Port of Los Angeles in Southern California. These data include 1-Hz global positioning system location and SAE J1939 high-speed controller area network information. Researchers processed the data through NREL's Drive-Cycle Rapid Investigation, Visualization, and Evaluation tool to examine vehicle kinematic and dynamic patterns across the spectrum of operations. Using themore » k-medoids clustering method, a repeatable and quantitative process for multi-mode drive cycle segmentation, the analysis led to the creation of multiple drive cycles representing four distinct modes of operation that can be used independently or in combination. These drive cycles are statistically representative of real-world operation of port drayage vehicles. When combined with modeling and simulation tools, these representative test cycles allow advanced vehicle or systems developers to efficiently and accurately evaluate vehicle technology performance requirements to reduce cost and development time while ultimately leading to the commercialization of advanced technologies that meet the performance requirements of the port drayage vocation. The drive cycles, which are suitable for chassis dynamometer testing, were compared to several existing test cycles. This paper presents the clustering methodology, accompanying results of the port drayage duty cycle analysis and custom drive cycle creation.« less

Heavy-Duty Vehicle Port Drayage Drive Cycle Characterization and Development: Preprint

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prohaska, Robert; Konan, Arnaud; Kelly, Kenneth

In an effort to better understand the operational requirements of port drayage vehicles and their potential for adoption of advanced technologies, National Renewable Energy Laboratory (NREL) researchers collected over 36,000 miles of in-use duty cycle data from 30 Class 8 drayage trucks operating at the Port of Long Beach and Port of Los Angeles in Southern California. These data include 1-Hz global positioning system location and SAE J1939 high-speed controller area network information. Researchers processed the data through NREL's Drive-Cycle Rapid Investigation, Visualization, and Evaluation tool to examine vehicle kinematic and dynamic patterns across the spectrum of operations. Using themore » k-medoids clustering method, a repeatable and quantitative process for multi-mode drive cycle segmentation, the analysis led to the creation of multiple drive cycles representing four distinct modes of operation that can be used independently or in combination. These drive cycles are statistically representative of real-world operation of port drayage vehicles. When combined with modeling and simulation tools, these representative test cycles allow advanced vehicle or systems developers to efficiently and accurately evaluate vehicle technology performance requirements to reduce cost and development time while ultimately leading to the commercialization of advanced technologies that meet the performance requirements of the port drayage vocation. The drive cycles, which are suitable for chassis dynamometer testing, were compared to several existing test cycles. This paper presents the clustering methodology, accompanying results of the port drayage duty cycle analysis and custom drive cycle creation.« less

Heavy-Duty Vehicle Port Drayage Drive Cycle Characterization and Development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prohaska, Robert; Konan, Arnaud; Kelly, Kenneth

2016-05-02

In an effort to better understand the operational requirements of port drayage vehicles and their potential for adoption of advanced technologies, National Renewable Energy Laboratory (NREL) researchers collected over 36,000 miles of in-use duty cycle data from 30 Class 8 drayage trucks operating at the Port of Long Beach and Port of Los Angeles in Southern California. These data include 1-Hz global positioning system location and SAE J1939 high-speed controller area network information. Researchers processed the data through NREL's Drive-Cycle Rapid Investigation, Visualization, and Evaluation tool to examine vehicle kinematic and dynamic patterns across the spectrum of operations. Using themore » k-medoids clustering method, a repeatable and quantitative process for multi-mode drive cycle segmentation, the analysis led to the creation of multiple drive cycles representing four distinct modes of operation that can be used independently or in combination. These drive cycles are statistically representative of real-world operation of port drayage vehicles. When combined with modeling and simulation tools, these representative test cycles allow advanced vehicle or systems developers to efficiently and accurately evaluate vehicle technology performance requirements to reduce cost and development time while ultimately leading to the commercialization of advanced technologies that meet the performance requirements of the port drayage vocation. The drive cycles, which are suitable for chassis dynamometer testing, were compared to several existing test cycles. This paper presents the clustering methodology, accompanying results of the port drayage duty cycle analysis and custom drive cycle creation.« less

The Study of Microbial Environmental Processes Related to the Natural Attenuation of Uranium at the Rifle Site using Systems-level Biology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Methe, Barbara; Lipton, Mary; Mahadevan, Krishna

Microbes exist in communities in the environment where they are fundamental drivers of global carbon, nutrient and metal cycles. In subsurface environments, they possess significant metabolic potential to affect these global cycles including the transformation of radionuclides. This study examined the influence of microbial communities in sediment zones undergoing biogeochemical cycling of carbon, nutrients and metals including natural attenuation of uranium. This study examined the relationship of both the microbiota (taxonomy) and their metabolic capacity (function) in driving carbon, nutrient and metal cycles including uranium reduction at the Department of Energy (DOE) Rifle Integrated Field Research Challenge (RIFRC). Objectives ofmore » this project were: 1) to apply systems-level biology through application of ‘metaomics’ approaches (collective analyses of whole microbial community DNA, RNA and protein) to the study of microbial environmental processes and their relationship to C, N and metals including the influence of microbial communities on uranium contaminant mobility in subsurface settings undergoing natural attenuation, 2) improve methodologies for data generation using metaomics (collectively metagenomics, metatranscriptomics and proteomics) technologies and analysis and interpretation of that data and 3) use the data generated from these studies towards microbial community-scale metabolic modeling. The strategy for examining these subsurface microbial communities was to generate sequence reads from microbial community DNA (metagenomics or whole genome shotgun sequencing (WGS)) and RNA (metatranscriptomcs or RNAseq) and protein information using proteomics. Results were analyzed independently and through computational modeling. Overall, the community model generated information on the microbial community structure that was observed using metaomic approaches at RIFRC sites and thus provides an important framework for continued community modeling development. The model as created is capable of predicting the response of the community structure in changing environments such as anoxic/oxic conditions or limitations by carbon or nutrients. The ability to more accurately model these responses is critical to understanding carbon and energy flows in an ecosystem is critical towards improving our ability to make predictions that can be used to design more efficient remediation and management strategies, and better understand the implications of environmental perturbations on these ecosystems.« less

In situ Visualization of State-of-Charge Heterogeneity within a LiCoO 2 Particle that Evolves upon Cycling at Different Rates

DOE PAGES

Xu, Yahong; Hu, Enyuan; Zhang, Kai; ...

2017-05-05

For designing new battery systems with higher energy density and longer cycle life, it is important to understand the degradation mechanism of the electrode material, especially at the individual particle level. Using in situ transmission X-ray microscopy (TXM) coupled to a pouch cell setup, the inhomogeneous Li distribution as well as the formation, population, and evolution of inactive domains in a single LiCoO 2 particle were visualized in this paper as it was cycled for many times. It is found that the percentage of the particle that fully recovered to the pristine state is strongly related to the cycling rate.more » Interestingly, we also observed the evolution of the inactive region within the particle during long-term cycling. The relationship between morphological degradation and chemical inhomogeneity, including the formation of unanticipated Co metal phase, is also observed. Finally, our work highlights the capability of in situ TXM for studying the degradation mechanism of materials in LIBs.« less

Features of the Phosphatidylinositol Cycle and its Role in Signal Transduction.

PubMed

Epand, Richard M

2017-08-01

The phosphatidylinositol cycle (PI-cycle) has a central role in cell signaling. It is the major pathway for the synthesis of phosphatidylinositol and its phosphorylated forms. In addition, some lipid intermediates of the PI-cycle, including diacylglycerol and phosphatidic acid, are also important lipid signaling agents. The PI-cycle has some features that are important for the understanding of its role in the cell. As a cycle, the intermediates will be regenerated. The PI-cycle requires a large amount of metabolic energy. There are different steps of the cycle that occur in two different membranes, the plasma membrane and the endoplasmic reticulum. In order to complete the PI-cycle lipid must be transferred between the two membranes. The role of the Nir proteins in the process has recently been elucidated. The lipid intermediates of the PI-cycle are normally highly enriched with 1-stearoyl-2-arachidonoyl molecular species in mammals. This enrichment will be retained as long as the intermediates are segregated from other lipids of the cell. However, there is a significant fraction (>15 %) of lipids in the PI-cycle of normal cells that have other acyl chains. Phosphatidylinositol largely devoid of arachidonoyl chains are found in cancer cells. Phosphatidylinositol species with less unsaturation will not be as readily converted to phosphatidylinositol-3,4,5-trisphosphate, the lipid required for the activation of Akt with resulting effects on cell proliferation. Thus, the cyclical nature of the PI-cycle, its dependence on acyl chain composition and its requirement for lipid transfer between two membranes, explain many of the biological properties of this cycle.

Key influences on motivations for utility cycling (cycling for transport to and from places).

PubMed

Heesch, Kristiann C; Sahlqvist, Shannon

2013-12-01

Although increases in cycling in Brisbane are encouraging, bicycle mode share to work (the proportion of people travelling to work by bicycle) in the state of Queensland remains low. The aim of this qualitative study was to draw upon the lived experiences of Queensland cyclists to understand the main motivators for utility cycling (cycling as a means to get to and from places) and compare motivators between utility cyclists (those who cycle for utility as well as for recreation) and non-utility cyclists (those who cycle only for recreation). For an online survey, members of a bicycle group (831 utility cyclists and 931 non-utility cyclists, aged 18-90 years) were asked to describe, unprompted, what would motivate them to engage in utility cycling (more often). Responses were coded into themes within four levels of an ecological model. Within an ecological model, built environment influences on motivation were grouped according to whether they related to appeal (safety), convenience (accessibility) or attractiveness (more amenities) and included adequate infrastructure for short trips, bikeway connectivity, end-of-trip facilities at public locations and easy and safe bicycle access to destinations outside of cities. A key social-cultural influence related to improved interactions among different road users. The built and social-cultural environments need to be more supportive of utility cycling before even current utility and non-utility cyclists will be motivated to engage (more often) in utility cycling. SO WHAT?: Additional government strategies and more and better infrastructure that support utility cycling beyond commuter cycling may encourage a utility cycling culture.

Connecting Satellite Observations with Water Cycle Variables Through Land Data Assimilation: Examples Using the NASA GEOS-5 LDAS

NASA Technical Reports Server (NTRS)

Reichle, Rolf H.; De Lannoy, Gabrielle J. M.; Forman, Barton A.; Draper, Clara S.; Liu, Qing

2013-01-01

A land data assimilation system (LDAS) can merge satellite observations (or retrievals) of land surface hydrological conditions, including soil moisture, snow, and terrestrial water storage (TWS), into a numerical model of land surface processes. In theory, the output from such a system is superior to estimates based on the observations or the model alone, thereby enhancing our ability to understand, monitor, and predict key elements of the terrestrial water cycle. In practice, however, satellite observations do not correspond directly to the water cycle variables of interest. The present paper addresses various aspects of this seeming mismatch using examples drawn from recent research with the ensemble-based NASA GEOS-5 LDAS. These aspects include (1) the assimilation of coarse-scale observations into higher-resolution land surface models, (2) the partitioning of satellite observations (such as TWS retrievals) into their constituent water cycle components, (3) the forward modeling of microwave brightness temperatures over land for radiance-based soil moisture and snow assimilation, and (4) the selection of the most relevant types of observations for the analysis of a specific water cycle variable that is not observed (such as root zone soil moisture). The solution to these challenges involves the careful construction of an observation operator that maps from the land surface model variables of interest to the space of the assimilated observations.

Moving forward in circles: challenges and opportunities in modelling population cycles.

PubMed

Barraquand, Frédéric; Louca, Stilianos; Abbott, Karen C; Cobbold, Christina A; Cordoleani, Flora; DeAngelis, Donald L; Elderd, Bret D; Fox, Jeremy W; Greenwood, Priscilla; Hilker, Frank M; Murray, Dennis L; Stieha, Christopher R; Taylor, Rachel A; Vitense, Kelsey; Wolkowicz, Gail S K; Tyson, Rebecca C

2017-08-01

Population cycling is a widespread phenomenon, observed across a multitude of taxa in both laboratory and natural conditions. Historically, the theory associated with population cycles was tightly linked to pairwise consumer-resource interactions and studied via deterministic models, but current empirical and theoretical research reveals a much richer basis for ecological cycles. Stochasticity and seasonality can modulate or create cyclic behaviour in non-intuitive ways, the high-dimensionality in ecological systems can profoundly influence cycling, and so can demographic structure and eco-evolutionary dynamics. An inclusive theory for population cycles, ranging from ecosystem-level to demographic modelling, grounded in observational or experimental data, is therefore necessary to better understand observed cyclical patterns. In turn, by gaining better insight into the drivers of population cycles, we can begin to understand the causes of cycle gain and loss, how biodiversity interacts with population cycling, and how to effectively manage wildly fluctuating populations, all of which are growing domains of ecological research. © 2017 John Wiley & Sons Ltd/CNRS.

Moving forward in circles: Challenges and opportunities in modeling population cycles

USGS Publications Warehouse

Barraquand, Frederic; Louca, Stilianos; Abbott, Karen C; Cobbold, Christina A; Cordoleani, Flora; DeAngelis, Donald L.; Elderd, Bret D; Fox, Jeremy W; Greenwood, Priscilla; Hilker, Frank M; Murray, Dennis; Stieha, Christopher R; Taylor, Rachel A; Vitense, Kelsey; Wolkowicz, Gail; Tyson, Rebecca C

2017-01-01

Population cycling is a widespread phenomenon, observed across a multitude of taxa in both laboratory and natural conditions. Historically, the theory associated with population cycles was tightly linked to pairwise consumer–resource interactions and studied via deterministic models, but current empirical and theoretical research reveals a much richer basis for ecological cycles. Stochasticity and seasonality can modulate or create cyclic behaviour in non-intuitive ways, the high-dimensionality in ecological systems can profoundly influence cycling, and so can demographic structure and eco-evolutionary dynamics. An inclusive theory for population cycles, ranging from ecosystem-level to demographic modelling, grounded in observational or experimental data, is therefore necessary to better understand observed cyclical patterns. In turn, by gaining better insight into the drivers of population cycles, we can begin to understand the causes of cycle gain and loss, how biodiversity interacts with population cycling, and how to effectively manage wildly fluctuating populations, all of which are growing domains of ecological research.

A STUDY OF THE HEMISPHERIC ASYMMETRY OF SUNSPOT AREA DURING SOLAR CYCLES 23 AND 24

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chowdhury, Partha; Choudhary, D. P.; Gosain, Sanjay, E-mail: partha240@yahoo.co.in, E-mail: parthares@gmail.com, E-mail: debiprasad.choudhary@csun.edu, E-mail: sgosain@nso.edu

2013-05-10

Solar activity indices vary over the Sun's disk, and various activity parameters are not considered to be symmetric between the northern and southern hemispheres of the Sun. The north-south asymmetry of different solar indices provides an important clue to understanding subphotospheric dynamics and solar dynamo action, especially with regard to nonlinear dynamo models. In the present work, we study the statistical significance of the north-south asymmetry of sunspot areas for the complete solar cycle 23 (1996-2008) and rising branch of cycle 24 (first 45 months). The preferred hemisphere in each year of cycles 23 and 24 has been identified bymore » calculating the probability of hemispheric distribution of sunspot areas. The statistically significant intermediate-term periodicities of the north-south asymmetry of sunspot area data have also been investigated using Lomb-Scargle and wavelet techniques. A number of short- and mid-term periods including the best-known Rieger one (150-160 days) are detected in cycle 23 and near Rieger-type periods during cycle 24, and most of them are found to be time variable. We present our results and discuss their possible explanations with the help of theoretical models and observations.« less

Cosmic Ray Helium Intensities over the Solar Cycle from ACE

NASA Technical Reports Server (NTRS)

DeNolfo, G. A.; Yanasak, N. E.; Binns, W. R.; Cohen, C. M. S.; Cummings, A. C.; Davis, A. J.; George, J. S.; Hink. P. L.; Israel, M. H.; Lave, K.;

Episodic inputs of atmospheric nitrogen to the Sargasso Sea: Contributions to new production and phytoplankton blooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michaels, A.F.; Johnson, R.J.; Siegel, D.A.

1993-06-01

This paper compares a recent atmospheric wet deposition record (including all measurable daily rainfall events between October 1988 and June 1991) with concurrent measurements of nitrogen cycling and biomass at the U.S. Joint Global Ocean Flux Study Bermuda Atlantic Time Series Study station. The two data sets, among the most complete synoptic records of atmospheric nitrogen deposition and ocean nitrogen cycling, provide an opportunity to directly assess the importance of nitrogen deposition in the ocean. The results indicate that individual nitrogen wet deposition events are usually small compared to the ambient nitrogen cycle and that only under sustained calm conditionsmore » following large deposition events will nitrogen deposition processes be an important signal for the understanding of ocean biochemistry. 46 refs., 7 figs.« less

Understanding growth and development of forage plants

USDA-ARS?s Scientific Manuscript database

Understanding the developmental morphology of forage plants is important for making good management decisions. Many such decisions involve timing the initiation or termination of a management practice to a particular stage of development in the life cycle of the forage. The life cycles of forage pl...

Comparing aboveground biomass predictions for an uneven-aged pine-dominated stand using local, regional, and national models

Treesearch

D.C. Bragg; K.M. McElligott

2013-01-01

Sequestration by Arkansas forests removes carbon dioxide from the atmosphere, storing this carbon in biomass that fills a number of critical ecological and socioeconomic functions. We need a better understanding of the contribution of forests to the carbon cycle, including the accurate quantification of tree biomass. Models have long been developed to predict...

Three-dimensional visualization of gammaherpesvirus life cycle in host cells by electron tomography.

PubMed

Peng, Li; Ryazantsev, Sergey; Sun, Ren; Zhou, Z Hong

2010-01-13

Gammaherpesviruses are etiologically associated with human tumors. A three-dimensional (3D) examination of their life cycle in the host is lacking, significantly limiting our understanding of the structural and molecular basis of virus-host interactions. Here, we report the first 3D visualization of key stages of the murine gammaherpesvirus 68 life cycle in NIH 3T3 cells, including viral attachment, entry, assembly, and egress, by dual-axis electron tomography. In particular, we revealed the transient processes of incoming capsids injecting viral DNA through nuclear pore complexes and nascent DNA being packaged into progeny capsids in vivo as a spool coaxial with the putative portal vertex. We discovered that intranuclear invagination of both nuclear membranes is involved in nuclear egress of herpesvirus capsids. Taken together, our results provide the structural basis for a detailed mechanistic description of gammaherpesvirus life cycle and also demonstrate the advantage of electron tomography in dissecting complex cellular processes of viral infection.

Fast-cycling unit of root turnover in perennial herbaceous plants in a cold temperate ecosystem

NASA Astrophysics Data System (ADS)

Sun, Kai; Luke McCormack, M.; Li, Le; Ma, Zeqing; Guo, Dali

2016-01-01

Roots of perennial plants have both persistent portion and fast-cycling units represented by different levels of branching. In woody species, the distal nonwoody branch orders as a unit are born and die together relatively rapidly (within 1-2 years). However, whether the fast-cycling units also exist in perennial herbs is unknown. We monitored root demography of seven perennial herbs over two years in a cold temperate ecosystem and we classified the largest roots on the root collar or rhizome as basal roots, and associated finer laterals as secondary, tertiary and quaternary roots. Parallel to woody plants in which distal root orders form a fast-cycling module, basal root and its finer laterals also represent a fast-cycling module in herbaceous plants. Within this module, basal roots had a lifespan of 0.5-2 years and represented 62-87% of total root biomass, thus dominating annual root turnover (60%-81% of the total). Moreover, root traits including root length, tissue density, and biomass were useful predictors of root lifespan. We conclude that both herbaceous and woody plants have fast-cycling modular units and future studies identifying the fast-cycling module across plant species should allow better understanding of how root construction and turnover are linked to whole-plant strategies.

Early Estimation of Solar Activity Cycle: Potential Capability and Limits

NASA Technical Reports Server (NTRS)

Kitiashvili, Irina N.; Collins, Nancy S.

2017-01-01

The variable solar magnetic activity known as the 11-year solar cycle has the longest history of solar observations. These cycles dramatically affect conditions in the heliosphere and the Earth's space environment. Our current understanding of the physical processes that make up global solar dynamics and the dynamo that generates the magnetic fields is sketchy, resulting in unrealistic descriptions in theoretical and numerical models of the solar cycles. The absence of long-term observations of solar interior dynamics and photospheric magnetic fields hinders development of accurate dynamo models and their calibration. In such situations, mathematical data assimilation methods provide an optimal approach for combining the available observational data and their uncertainties with theoretical models in order to estimate the state of the solar dynamo and predict future cycles. In this presentation, we will discuss the implementation and performance of an Ensemble Kalman Filter data assimilation method based on the Parker migratory dynamo model, complemented by the equation of magnetic helicity conservation and longterm sunspot data series. This approach has allowed us to reproduce the general properties of solar cycles and has already demonstrated a good predictive capability for the current cycle, 24. We will discuss further development of this approach, which includes a more sophisticated dynamo model, synoptic magnetogram data, and employs the DART Data Assimilation Research Testbed.

Revised Sunspot Numbers and the Effects on Understanding the Sunspot Cycle

NASA Astrophysics Data System (ADS)

Hathaway, D. H.

2014-12-01

While sunspot numbers provide only limited information about the sunspot cycle, they provide that information for at least twice as many sunspot cycles as any other direct solar observation. In particular, sunspot numbers are available before, during, and immediately after the Maunder Minimum (1645-1715). The instruments and methods used to count sunspots have changed over the last 400+ years. This leads to systematic changes in the sunspot number that can mask, or artificially introduce, characteristics of the sunspot cycle. The most widely used sunspot number is the International (Wolf/Zurich) sunspot number which is now calculated at the Solar Influences Data Center in Brussels, Belgium. These numbers extend back to 1749. The Group sunspot number extends back to the first telescopic observations of the Sun in 1610. There are well-known and significant differences between these two numbers where they overlap. Recent work has helped us to understand the sources of these differences and has led to proposed revisions in the sunspot numbers. Independent studies now support many of these revisions. These revised sunspot numbers suggest changes to our understanding of the sunspot cycle itself and to our understanding of its connection to climate change.

Perspectives on Applying Metabolomics to Understand Carbon Cycling and Process Rates in Deep-Sea Microorganisms

NASA Astrophysics Data System (ADS)

Vidoudez, C.; Saghatelian, A.; Girguis, P. R.

2014-12-01

The metabolisms of deep-sea microorganisms are still poorly characterized. So far, transcriptomics has been the most comprehensive proxy for the whole metabolisms of these organisms, but this approach is limited because it only represents the physiological poise of the cells, and is not linearly correlated to the rates and activity of the metabolic pathways. Using thermodynamics calculations and isotopic analyses can provide constraints on activity, but there are often discrepancies between available energy and calculated active biomass. A further understanding of metabolism both at the species and community level is necessary and metabolomics provides a means of capturing a "snapshot" of cell's metabolite pools, or of following labelled substrates as they move through metabolic pathways. We present our method development and initial results from our studies of the model organism Photobacterium profundum, and the benefits and challenges in meaningfully applying these methods to natural communities. These methods open the way to better understanding deep-sea metabolism on a more comprehensive level, including reserves compounds, alternate and secondary metabolism and potentially new metabolic pathways, and moreover the response of metabolism to changes in experimental conditions and carbon source can be readily followed. These will allow a better understanding of the carbon cycling pathways and their rate in natural communities.

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling

NASA Astrophysics Data System (ADS)

Carroll, M.; Shepson, P. B.; Bertman, S. B.; Sparks, J. P.; Holland, E. A.

2002-12-01

Atmosphere-Forest Exchange: Important Questions Regarding the Atmosphere's Role in the Delivery of Nutrient Nitrogen and Impacts on Nitrogen and Carbon Cycling Atmospheric composition and chemistry directly affect ecosystem nitrogen cycling and indirectly affect ecosystem carbon cycling and storage. Current understanding of atmosphere-forest nitrogen exchange and subsequent impacts is based almost exclusively on nitrogen deposition data obtained from networks using buckets placed in open areas, studies involving inorganic nitrogen, frequently with enhanced N deposition inputs applied only to soils, and that ignore multiple stresses (e.g., the combined effects of aerosols, ozone exposure, elevated CO2, and drought). Current models of nitrogen cycling treat deposited nitrogen (e.g., HNO3 and NO3-) as a permanent sink whereas data appear to indicate that photolytic and heterogeneous chemical processes occurring on surfaces and in dew can result in the re-evolution of gaseous species such as NO and HONO. Similarly, the direct uptake of gaseous nitrogen compounds by foliage has been neglected, compromising conclusions drawn from deposition experiments and ignoring a mechanism that may significantly affect nitrogen cycling and carbon storage, one that may become more significant with future atmospheric and climate change. We hypothesize that the atmosphere plays a significant role in the delivery of nutrient nitrogen to the N-limited mixed hardwood forest at the PROPHET research site at the University of Michigan Biological Station. We assert that a complete understanding of atmosphere- biosphere interactions and feedbacks is required to develop a predictive capability regarding forest response to increasing atmospheric CO2, reactive nitrogen, oxidants, and aerosols, increasing nitrogen and acidic deposition, and anticipated climate change. We further assert that conclusions drawn from studies that are limited to inorganic nitrogen, fertilization of soils, and/or that neglect the role of the canopy (in N uptake and/or remobilization) may not produce a complete understanding of N and C cycling in terrestrial ecosystems, including atmosphere-biosphere interactions and feedbacks. Here, as part of a new PROPHET focus on Biosphere Exchange of Atmospheric Carbon and Odd Nitrogen (BEACON), we identify a number of issues associated with nitrogen limited forest ecosystems and nitrogen saturation and important science questions that require collaborative studies involving the atmospheric and biospheric science communities.

Microbial extracellular enzymes in biogeochemical cycling of ecosystems.

PubMed

Luo, Ling; Meng, Han; Gu, Ji-Dong

2017-07-15

Extracellular enzymes, primarily produced by microorganisms, affect ecosystem processes because of their essential roles in degradation, transformation and mineralization of organic matter. Extracellular enzymes involved in the cycling of carbon (C), nitrogen (N) and phosphorus (P) have been widely investigated in many different ecosystems, and several enzymes have been recognized as key components in regulating C storage and nutrient cycling. In this review, it was the first time to summarize the specific extracellular enzymes related to C storage and nutrient cycling for better understanding the important role of microbial extracellular enzymes in biogeochemical cycling of ecosystems. Subsequently, ecoenzymatic stoichiometry - the relative ratio of extracellular enzyme, has been reviewed and further provided a new perspective for understanding biogeochemical cycling of ecosystems. Finally, the new insights of using microbial extracellular enzyme in indicating biogeochemical cycling and then protecting ecosystems have been suggested. Copyright © 2017 Elsevier Ltd. All rights reserved.

Employees' Perceptions of Cycle Commuting: A Qualitative Study

ERIC Educational Resources Information Center

van Bekkum, Jennifer E.; Williams, Joanne M.; Morris, Paul Graham

2011-01-01

Purpose: This study aims to provide an in-depth individual level understanding of the psychological factors that affect cycle commuting. Design/methodology/approach: A total of 15 participants (eight cycle commuters and seven potential cycle commuters) from a "cycle-friendly" employer based in a Scottish city took part in the study.…

The DOE water cycle pilot study.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, N. L.; King, A. W.; Miller, M. A.

In 1999, the U.S. Global Change Research Program (USGCRP) formed a Water Cycle Study Group (Hornberger et al. 2001) to organize research efforts in regional hydrologic variability, the extent to which this variability is caused by human activity, and the influence of ecosystems. The USGCRP Water Cycle Study Group was followed by a U.S. Department of Energy (DOE) Water Cycle Research Plan (Department of Energy 2002) that outlined an approach toward improving seasonal-to-interannual hydroclimate predictability and closing a regional water budget. The DOE Water Cycle Research Plan identified key research areas, including a comprehensive long-term observational database to support modelmore » development, and to develop a better understanding of the relationship between the components of local water budgets and large scale processes. In response to this plan, a multilaboratory DOE Water Cycle Pilot Study (WCPS) demonstration project began with a focus on studying the water budget and its variability at multiple spatial scales. Previous studies have highlighted the need for continued efforts to observationally close a local water budget, develop a numerical model closure scheme, and further quantify the scales in which predictive accuracy are optimal. A concerted effort within the National Oceanic and Atmospheric Administration (NOAA)-funded Global Energy and Water Cycle Experiment (GEWEX) Continental-scale International Project (GCIP) put forth a strategy to understand various hydrometeorological processes and phenomena with an aim toward closing the water and energy budgets of regional watersheds (Lawford 1999, 2001). The GCIP focus on such regional budgets includes the measurement of all components and reduction of the error in the budgets to near zero. To approach this goal, quantification of the uncertainties in both measurements and modeling is required. Model uncertainties within regional climate models continue to be evaluated within the Program to Intercompare Regional Climate Simulations (Takle et al. 1999), and model uncertainties within land surface models are being evaluated within the Program to Intercompare Land Surface Schemes (e.g., Henderson-Sellers 1993; Wood et al. 1998; Lohmann et al. 1998). In the context of understanding the water budget at watershed scales, the following two research questions that highlight DOE's unique water isotope analysis and high-performance modeling capabilities were posed as the foci of this pilot study: (1) Can the predictability of the regional water budget be improved using high-resolution model simulations that are constrained and validated with new hydrospheric water measurements? (2) Can water isotopic tracers be used to segregate different pathways through the water cycle and predict a change in regional climate patterns? To address these questions, numerical studies using regional atmospheric-land surface models and multiscale land surface hydrologic models were generated and, to the extent possible, the results were evaluated with observations. While the number of potential processes that may be important in the local water budget is large, several key processes were examined in detail. Most importantly, a concerted effort was made to understand water cycle processes and feedbacks at the land surface-atmosphere interface at spatial scales ranging from 30 m to hundreds of kilometers. A simple expression for the land surface water budget at the watershed scale is expressed as {Delta}S = P + G{sub in} - ET - Q - G{sub out}, where {Delta}S is the change in water storage, P is precipitation, ET is evapotranspiration, Q is streamflow, G{sub in} is groundwater entering the watershed, and G{sub out} is groundwater leaving the watershed, per unit time. The WCPS project identified data gaps and necessary model improvements that will lead to a more accurate representation of the terms in Eq. (1). Table 1 summarizes the components of this water cycle pilot study and the respective participants. The following section provides a description of the surface observation and modeling sites. This is followed by a section on model analyses, and then the summary and concluding remarks.« less

The Multi-Scale Response of Water Quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea: TURF2SURF

NASA Astrophysics Data System (ADS)

Cosby, B. J., Jr.; Wade, A. J.; Reinsch, S.; Robins, P. E.; Emmett, B.; Jago, C. F.

2015-12-01

Turf2Surf is a large, multi-disciplinary project that aims to test the hypothesis that the spatial and temporal patterns of water quality, C sequestration and biodiversity are better explained through the large-scale coupling of C, N and P cycles than by single cycle, single system approaches. To achieve this, a catchment-scale study of the River Conwy (349 km2) in Wales is being done with emphasis on determining when, where and how coupled macronutrient (C, N, P) cycling occurs in the biogeochemical hot-spots of the soils, the riparian zone, instream and in the river-estuarine transition zone. A major integrated measurement programme is now largely complete. New data are being analysed to understand which soil properties have greatest influence on above and below-ground productivity including plant traits and how microbial processing is controlled by stoichiometry and nutrient priming. Within the stream network, new understanding is being produced on the in-river algal and whole ecosystem (metabolic) response to CNP additions and the factors affecting the fate and cycling of organic matter. In the estuary, initial results indicate a subsurface jet is causing stratification and a velocity anomaly has been observed. Both are important in terms of suspended matter transport and floc break-up. An integrated model is being built to describe the soil-atmosphere-vegetation processes which is linked, firstly, to flow and water quality models that describe the CNP flux transport and transformations from the headwaters to the estuary and, secondly, to biodiversity models. The purpose of the integrated model is to quantify how coupled CNP cycles may respond to environmental change and thereby affect C sequestration, water quality and biodiversity in the future. The team are now in the major phase of data synthesis and model development and are interested in linking with similar studies involving coupled CNP cycles across the atmospheric-terrestrial-freshwater-coastal continuum.

The Multi-Scale Response of Water Quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea: TURF2SURF

NASA Astrophysics Data System (ADS)

Wade, Andrew; Emmett, Bridget; Jago, Colin; Stutter, Marc; Biggs, Jeremy

2016-04-01

Turf2Surf is a large, multi-disciplinary project that aims to test the hypothesis that the spatial and temporal patterns of water quality, C sequestration and biodiversity are better explained through the large-scale coupling of C, N and P cycles than by single cycle, single system approaches. To achieve this, a catchment-scale study of the River Conwy (349 km2) in Wales is being done with emphasis on determining when, where and how coupled macronutrient (C, N, P) cycling occurs in the biogeochemical hot-spots of the soils, the riparian zone, instream and in the river-estuarine transition zone. A major integrated measurement programme is now largely complete. New data are being analysed to understand which soil properties have greatest influence on above and below-ground productivity including plant traits and how microbial processing is controlled by stoichiometry and nutrient priming. Within the stream network, new understanding is being produced on the in-river algal and whole ecosystem (metabolic) response to CNP additions and the factors affecting the fate and cycling of organic matter. In the estuary, initial results indicate a subsurface jet is causing stratification and a velocity anomaly has been observed. Both are important in terms of suspended matter transport and floc break-up. An integrated model is being built to describe the soil-atmosphere-vegetation processes which is linked, firstly, to flow and water quality models that describe the CNP flux transport and transformations from the headwaters to the estuary and, secondly, to biodiversity models. The purpose of the integrated model is to quantify how coupled CNP cycles may respond to environmental change and thereby affect C sequestration, water quality and biodiversity in the future. The team are now in the major phase of data synthesis and model development and are interested in linking with similar studies involving coupled CNP cycles across the atmospheric-terrestrial-freshwater-coastal continuum.

The origin of neap-spring tidal cycles

USGS Publications Warehouse

Kvale, E.P.

2006-01-01

The origin of oceanic tides is a basic concept taught in most introductory college-level sedimentology/geology, oceanography, and astronomy courses. Tides are typically explained in the context of the equilibrium tidal theory model. Yet this model does not take into account real tides in many parts of the world. Not only does the equilibrium tidal model fail to explicate amphidromic circulation, it also does not explain diurnal tides in low latitude positions. It likewise fails to explain the existence of tide-dominated areas where neap-spring cycles are synchronized with the 27.32-day orbital cycle of the Moon (tropical month), rather than with the more familiar 29.52-day cycle of lunar phases (synodic month). Both types of neap-spring cycles can be recognized in the rock record. A complete explanation of the origin of tides should include a discussion of dynamic tidal theory. In the dynamic tidal model, tides resulting from the motions of the Moon in its orbit around the Earth and the Earth in its orbit around the Sun are modeled as products of the combined effects of a series of phantom satellites. The movement of each of these satellites, relative to the Earth's equator, creates its own tidal wave that moves around an amphidromic point. Each of these waves is referred to as a tidal constituent. The geometries of the ocean basins determine which of these constituents are amplified. Thus, the tide-raising potential for any locality on Earth can be conceptualized as the result of a series of tidal constituents specific to that region. A better understanding of tidal cycles opens up remarkable opportunities for research on tidal deposits with implications for, among other things, a more complete understanding of the tidal dynamics responsible for sediment transport and deposition, changes in Earth-Moon distance through time, and the possible influences tidal cycles may exert on organisms. ?? 2006 Elsevier B.V. All rights reserved.

The need and potential for building a integrated knowledge-base of the Earth-Human system

NASA Astrophysics Data System (ADS)

Jacobs, Clifford

2011-03-01

The pursuit of scientific understanding is increasingly based on interdisciplinary research. To understand more deeply the planet and its interactions requires a progressively more holistic approach, exploring knowledge coming from all scientific and engineering disciplines including but not limited to, biology, chemistry, computer sciences, geosciences, material sciences, mathematics, physics, cyberinfrastucture, and social sciences. Nowhere is such an approach more critical than in the study of global climate change in which one of the major challenges is the development of next-generation Earth System Models that include coupled and interactive representations of ecosystems, agricultural working lands and forests, urban environments, biogeochemistry, atmospheric chemistry, ocean and atmospheric currents, the water cycle, land ice, and human activities.

The centriole duplication cycle

PubMed Central

Fırat-Karalar, Elif Nur; Stearns, Tim

2014-01-01

Centrosomes are the main microtubule-organizing centre of animal cells and are important for many critical cellular and developmental processes from cell polarization to cell division. At the core of the centrosome are centrioles, which recruit pericentriolar material to form the centrosome and act as basal bodies to nucleate formation of cilia and flagella. Defects in centriole structure, function and number are associated with a variety of human diseases, including cancer, brain diseases and ciliopathies. In this review, we discuss recent advances in our understanding of how new centrioles are assembled and how centriole number is controlled. We propose a general model for centriole duplication control in which cooperative binding of duplication factors defines a centriole ‘origin of duplication’ that initiates duplication, and passage through mitosis effects changes that license the centriole for a new round of duplication in the next cell cycle. We also focus on variations on the general theme in which many centrioles are created in a single cell cycle, including the specialized structures associated with these variations, the deuterosome in animal cells and the blepharoplast in lower plant cells. PMID:25047614

Carbon budgets of biological soil crusts at micro-, meso-, and global scales

USGS Publications Warehouse

Sancho, Leopoldo G; Belnap, Jayne; Colesie, Claudia; Raggio, Jose; Weber, Bettina

2016-01-01

The importance of biocrusts in the ecology of arid lands across all continents is widely recognized. In spite of this broad distribution, contributions of biocrusts to the global biogeochemical cycles have only recently been considered. While these studies opened a new view on the global role of biocrusts, they also clearly revealed the lack of data for many habitats and of overall standards for measurements and analysis. In order to understand carbon cycling in biocrusts and the progress which has been made during the last 15 years, we offer a multi-scale approach covering different climatic regions. We also include a discussion on available measurement techniques at each scale: A micro-scale section focuses on the individual organism level, including modeling based on the combination of field and lab data. The meso-scale section addresses the CO2 exchange of a complete ecosystem or at the community level. Finally, we consider the contribution of biocrusts at a global scale, giving a general perspective of the most relevant findings regarding the role of biological soil crusts in the global terrestrial carbon cycle.

ACOG Committee Opinion No. 651: Menstruation in Girls and Adolescents: Using the Menstrual Cycle as a Vital Sign.

PubMed

2015-12-01

Despite variations worldwide and within the U.S. population, median age at menarche has remained relatively stable-between 12 years and 13 years-across well-nourished populations in developed countries. Environmental factors, including socioeconomic conditions, nutrition, and access to preventive health care, may influence the timing and progression of puberty. A number of medical conditions can cause abnormal uterine bleeding, characterized by unpredictable timing and variable amount of flow. Clinicians should educate girls and their caretakers (eg, parents or guardians) about what to expect of a first menstrual period and the range for normal cycle length of subsequent menses. Identification of abnormal menstrual patterns in adolescence may improve early identification of potential health concerns for adulthood. It is important for clinicians to have an understanding of the menstrual patterns of adolescent girls, the ability to differentiate between normal and abnormal menstruation, and the skill to know how to evaluate the adolescent girl patient. By including an evaluation of the menstrual cycle as an additional vital sign, clinicians reinforce its importance in assessing overall health status for patients and caretakers.

Preface: Impacts of extreme climate events and disturbances on carbon dynamics

USGS Publications Warehouse

Xiao, Jingfeng; Liu, Shuguang; Stoy, Paul C.

2016-01-01

The impacts of extreme climate events and disturbances (ECE&D) on the carbon cycle have received growing attention in recent years. This special issue showcases a collection of recent advances in understanding the impacts of ECE&D on carbon cycling. Notable advances include quantifying how harvesting activities impact forest structure, carbon pool dynamics, and recovery processes; observed drastic increases of the concentrations of dissolved organic carbon and dissolved methane in thermokarst lakes in western Siberia during a summer warming event; disentangling the roles of herbivores and fire on forest carbon dioxide flux; direct and indirect impacts of fire on the global carbon balance; and improved atmospheric inversion of regional carbon sources and sinks by incorporating disturbances. Combined, studies herein indicate several major research needs. First, disturbances and extreme events can interact with one another, and it is important to understand their overall impacts and also disentangle their effects on the carbon cycle. Second, current ecosystem models are not skillful enough to correctly simulate the underlying processes and impacts of ECE&D (e.g., tree mortality and carbon consequences). Third, benchmark data characterizing the timing, location, type, and magnitude of disturbances must be systematically created to improve our ability to quantify carbon dynamics over large areas. Finally, improving the representation of ECE&D in regional climate/earth system models and accounting for the resulting feedbacks to climate are essential for understanding the interactions between climate and ecosystem dynamics.

Accounting for the biogeochemical cycle of nitrogen in input-output life cycle assessment.

PubMed

Singh, Shweta; Bakshi, Bhavik R

2013-08-20

Nitrogen is indispensable for sustaining human activities through its role in the production of food, animal feed, and synthetic chemicals. This has encouraged significant anthropogenic mobilization of reactive nitrogen and its emissions into the environment resulting in severe disruption of the nitrogen cycle. This paper incorporates the biogeochemical cycle of nitrogen into the 2002 input-output model of the U.S. economy. Due to the complexity of this cycle, this work proposes a unique classification of nitrogen flows to facilitate understanding of the interaction between economic activities and various flows in the nitrogen cycle. The classification scheme distinguishes between the mobilization of inert nitrogen into its reactive form, use of nitrogen in various products, and nitrogen losses to the environment. The resulting inventory and model of the US economy can help quantify the direct and indirect impacts or dependence of economic sectors on the nitrogen cycle. This paper emphasizes the need for methods to manage the N cycle that focus not just on N losses, which has been the norm until now, but also include other N flows for a more comprehensive view and balanced decisions. Insight into the N profile of various sectors of the 2002 U.S. economy is presented, and the inventory can also be used for LCA or Hybrid LCA of various products. The resulting model is incorporated in the approach of Ecologically-Based LCA and available online.

The glutathione cycle: Glutathione metabolism beyond the γ-glutamyl cycle.

PubMed

Bachhawat, Anand Kumar; Yadav, Shambhu

2018-04-17

Glutathione was discovered in 1888, over 125 years ago. Since then, our understanding of various functions and metabolism of this important molecule has grown over these years. But it is only now, in the last decade, that a somewhat complete picture of its metabolism has emerged. Glutathione metabolism has till now been largely depicted and understood by the γ-glutamyl cycle that was proposed in 1970. However, new findings and knowledge particularly on the transport and degradation of glutathione have revealed that many aspects of the γ-glutamyl cycle are incorrect. Despite this, an integrated critical analysis of the cycle has never been undertaken and this has led to the cycle and its errors perpetuating in the literature. This review takes a careful look at the γ-glutamyl cycle and its shortcomings and presents a "glutathione cycle" that captures the current understanding of glutathione metabolism. © 2018 IUBMB Life, 2018. © 2018 International Union of Biochemistry and Molecular Biology.

Advances in Understanding Global Water Cycle with Advent of Global Precipitation Measurement (GPM) Mission

NASA Technical Reports Server (NTRS)

Smith, Eric A.; Starr, David (Technical Monitor)

2002-01-01

Within this decade the internationally organized Global Precipitation Measurement (GPM) Mission will take an important step in creating a global precipitation observing system from space. One perspective for understanding the nature of GPM is that it will be a hierarchical system of datastreams beginning with very high caliber combined dual frequency radar/passive microwave (PMW) rain-radiometer retrievals, to high caliber PMW rain-radiometer only retrievals, and then on to blends of the former datastreams with additional lower-caliber PMW-based and IR-based rain retrievals. Within the context of the now emerging global water & energy cycle (GWEC) programs of a number of research agencies throughout the world, GPM serves as a centerpiece space mission for improving our understanding of the global water cycle from a global measurement perspective. One of the salient problems within our current understanding of the global water and energy cycle is determining whether a change in the rate of the water cycle is accompanying changes in climate, e.g., climate warming. As there are a number of ways in which to define a rate-change of the global water cycle, it is not entirely clear as to what constitutes such a determination. This paper presents an overview of the GPM Mission and how its observations can be used within the framework of the oceanic and continental water budget equations to determine whether a given perturbation in precipitation is indicative of an actual rate change in the global water cycle, consistent with required responses in water storage and/or water flux transport processes, or whether it is the natural variability of a fixed rate cycle.

Chaperones in hepatitis C virus infection

PubMed Central

Khachatoorian, Ronik; French, Samuel W

2016-01-01

The hepatitis C virus (HCV) infects approximately 3% of the world population or more than 185 million people worldwide. Each year, an estimated 350000-500000 deaths occur worldwide due to HCV-associated diseases including cirrhosis and hepatocellular carcinoma. HCV is the most common indication for liver transplantation in patients with cirrhosis worldwide. HCV is an enveloped RNA virus classified in the genus Hepacivirus in the Flaviviridae family. The HCV viral life cycle in a cell can be divided into six phases: (1) binding and internalization; (2) cytoplasmic release and uncoating; (3) viral polyprotein translation and processing; (4) RNA genome replication; (5) encapsidation (packaging) and assembly; and (6) virus morphogenesis (maturation) and secretion. Many host factors are involved in the HCV life cycle. Chaperones are an important group of host cytoprotective molecules that coordinate numerous cellular processes including protein folding, multimeric protein assembly, protein trafficking, and protein degradation. All phases of the viral life cycle require chaperone activity and the interaction of viral proteins with chaperones. This review will present our current knowledge and understanding of the role of chaperones in the HCV life cycle. Analysis of chaperones in HCV infection will provide further insights into viral/host interactions and potential therapeutic targets for both HCV and other viruses. PMID:26783419

Low Carbon Technology Options for the Natural Gas ...

EPA Pesticide Factsheets

The ultimate goal of this task is to perform environmental and economic analysis of natural gas based power production technologies (different routes) to investigate and evaluate strategies for reducing emissions from the power sector. It is a broad research area. Initially, the research will be focused on the preliminary analyses of hydrogen fuel based power production technologies utilizing hydrogen fuel in a large size, heavy-duty gas turbines in integrated reformer combined cycle (IRCC) and integrated gasification combined cycle (IGCC) for electric power generation. The research will be expanded step-by-step to include other advanced (e.g., Net Power, a potentially transformative technology utilizing a high efficiency CO2 conversion cycle (Allam cycle), and chemical looping etc.) pre-combustion and post-combustion technologies applied to natural gas, other fossil fuels (coal and heavy oil) and biomass/biofuel based on findings. Screening analysis is already under development and data for the analysis is being processed. The immediate action on this task include preliminary economic and environmental analysis of power production technologies applied to natural gas. Data for catalytic reforming technology to produce hydrogen from natural gas is being collected and compiled on Microsoft Excel. The model will be expanded for exploring and comparing various technologies scenarios to meet our goal. The primary focus of this study is to: 1) understand the chemic

[Nitrogen and water cycling of typical cropland in the North China Plain].

PubMed

Pei, Hong-wei; Shen, Yan-jun; Liu, Chang-ming

2015-01-01

Intensive fertilization and irrigation associated increasing grain production has led to serious groundwater depletion and soil/water pollution in the North China Plain (NCP). Intensive agriculture changes the initial mass and energy balance, and also results in huge risks to the water/soil resources and food security regionally. Based on the research reports on the nitrogen cycle and water cycle in typical cropland (winter wheat and summer corn) in the NCP during the past 20 years, and the meteorological data, field experiments and surveys, we calculated the nitrogen cycle and water-cycle for this typical cropland. Annual total nitrogen input were 632 kg N . hm-2, including 523 kg N . hm-2 from commercial fertilizer, 74 kg N . hm-2 from manure, 23 kg N . hm-2 from atmosphere, and 12 kg N . hm-2 from irrigation. All of annual outputs summed to 532 kg N . hm-2 including 289 kg N . hm-2 for crop, 77 kg N . hm-2 staying in soil profile, leaching 104 kg N . hm-2, 52 kg N . hm-2 for ammonia volatilization, 10 kg N . hm-2 loss in nitrification and denitrification. Uncertainties of the individual cases and the summary process lead to the unbalance of nitrogen. For the dominant parts of the field water cycle, annual precipitation was 557 mm, irrigation was 340 mm, while 762 mm was for evapotranspiration and 135 mm was for deep percolation. Considering uncertainties in the nitrogen and water cycles, coupled experiments based on multi-disciplines would be useful for understanding mechanisms for nitrogen and water transfer processes in the soil-plant-atmosphere-continuum (SPAC) , and the interaction between nitrogen and water, as well as determining the critical threshold values for sustainability of soil and water resources in the NCP.

A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments

PubMed Central

Mayhew, Michael B.; Robinson, Joshua W.; Jung, Boyoun; Haase, Steven B.; Hartemink, Alexander J.

2011-01-01

Motivation: To advance understanding of eukaryotic cell division, it is important to observe the process precisely. To this end, researchers monitor changes in dividing cells as they traverse the cell cycle, with the presence or absence of morphological or genetic markers indicating a cell's position in a particular interval of the cell cycle. A wide variety of marker data is available, including information-rich cellular imaging data. However, few formal statistical methods have been developed to use these valuable data sources in estimating how a population of cells progresses through the cell cycle. Furthermore, existing methods are designed to handle only a single binary marker of cell cycle progression at a time. Consequently, they cannot facilitate comparison of experiments involving different sets of markers. Results: Here, we develop a new sampling model to accommodate an arbitrary number of different binary markers that characterize the progression of a population of dividing cells along a branching process. We engineer a strain of Saccharomyces cerevisiae with fluorescently labeled markers of cell cycle progression, and apply our new model to two image datasets we collected from the strain, as well as an independent dataset of different markers. We use our model to estimate the duration of post-cytokinetic attachment between a S.cerevisiae mother and daughter cell. The Java implementation is fast and extensible, and includes a graphical user interface. Our model provides a powerful and flexible cell cycle analysis tool, suitable to any type or combination of binary markers. Availability: The software is available from: http://www.cs.duke.edu/~amink/software/cloccs/. Contact: michael.mayhew@duke.edu; amink@cs.duke.edu PMID:21685084

A model of the regulatory network involved in the control of the cell cycle and cell differentiation in the Caenorhabditis elegans vulva.

PubMed

Weinstein, Nathan; Ortiz-Gutiérrez, Elizabeth; Muñoz, Stalin; Rosenblueth, David A; Álvarez-Buylla, Elena R; Mendoza, Luis

2015-03-13

There are recent experimental reports on the cross-regulation between molecules involved in the control of the cell cycle and the differentiation of the vulval precursor cells (VPCs) of Caenorhabditis elegans. Such discoveries provide novel clues on how the molecular mechanisms involved in the cell cycle and cell differentiation processes are coordinated during vulval development. Dynamic computational models are helpful to understand the integrated regulatory mechanisms affecting these cellular processes. Here we propose a simplified model of the regulatory network that includes sufficient molecules involved in the control of both the cell cycle and cell differentiation in the C. elegans vulva to recover their dynamic behavior. We first infer both the topology and the update rules of the cell cycle module from an expected time series. Next, we use a symbolic algorithmic approach to find which interactions must be included in the regulatory network. Finally, we use a continuous-time version of the update rules for the cell cycle module to validate the cyclic behavior of the network, as well as to rule out the presence of potential artifacts due to the synchronous updating of the discrete model. We analyze the dynamical behavior of the model for the wild type and several mutants, finding that most of the results are consistent with published experimental results. Our model shows that the regulation of Notch signaling by the cell cycle preserves the potential of the VPCs and the three vulval fates to differentiate and de-differentiate, allowing them to remain completely responsive to the concentration of LIN-3 and lateral signal in the extracellular microenvironment.

Effects of biotic disturbances on forest carbon cycling in the United States and Canada

USGS Publications Warehouse

Vogelmann, James E.; Allen, Craig D.; Hicke, Jeffrey A.; Desai, Ankur R.; Dietze, Michael C.; Hall, Ronald J.; ,

2012-01-01

Forest insects and pathogens are major disturbance agents that have affected millions of hectares in North America in recent decades, implying significant impacts to the carbon (C) cycle. Here, we review and synthesize published studies of the effects of biotic disturbances on forest C cycling in the United States and Canada. Primary productivity in stands was reduced, sometimes considerably, immediately following insect or pathogen attack. After repeated growth reductions caused by some insects or pathogens or a single infestation by some bark beetle species, tree mortality occurred, altering productivity and decomposition. In the years following disturbance, primary productivity in some cases increased rapidly as a result of enhanced growth by surviving vegetation, and in other cases increased slowly because of lower forest regrowth. In the decades following tree mortality, decomposition increased as a result of the large amount of dead organic matter. Net ecosystem productivity decreased immediately following attack, with some studies reporting a switch to a C source to the atmosphere, and increased afterward as the forest regrew and dead organic matter decomposed. Large variability in C cycle responses arose from several factors, including type of insect or pathogen, time since disturbance, number of trees affected, and capacity of remaining vegetation to increase growth rates following outbreak. We identified significant knowledge gaps, including limited understanding of carbon cycle impacts among different biotic disturbance types (particularly pathogens), their impacts at landscape and regional scales, and limited capacity to predict disturbance events and their consequences for carbon cycling. We conclude that biotic disturbances can have major impacts on forest C stocks and fluxes and can be large enough to affect regional C cycling. However, additional research is needed to reduce the uncertainties associated with quantifying biotic disturbance effects on the North American C budget.

[Carl Friedrich von Weizsäcker and the Bethe-Weizsäcker cycle].

PubMed

Wiescher, Michael

2014-01-01

The Carbon- or Bethe-Weizsäcker Cycle plays an important role in astrophysics as one of the most important energy sources for a quiescent and explosive hydrogen burning in stars. This paper presents the historical background and the contributions by Carl Friedrich von Weizsäcker and Hans Bethe who provided the first predictions of the cycle. Furthermore, it discussed the experimental verification of the predicted process in the following decades. Also discussed is the extension of the initial Carbon cycle to the CNO multi-cycles and the hot CNO cycles which followed from the detailed experimental studies of the associated nuclear reactions. Finally discussed is the impact of the experimental and theoretical results on our present understanding of hydrogen burning in different stellar environments and on our understanding of the chemical evolution of our universe.

Matrix Fatigue Cracking Mechanisms of Alpha(2) TMC for Hypersonic Applications

NASA Technical Reports Server (NTRS)

Gabb, Timothy P.; Gayda, John

1994-01-01

The objective of this work was to understand matrix cracking mechanisms in a unidirectional alpha(sub 2) TMC in possible hypersonic applications. A (0)(sub 8) SCS-6/Ti-24Al-11Nb (at. percent) TMC was first subjected to a variety of simple isothermal and nonisothermal fatigue cycles to evaluate the damage mechanisms in simple conditions. A modified ascent mission cycle test was then performed to evaluate the combined effects of loading modes. This cycle mixes mechanical cycling at 150 and 483 C, sustained loads, and a slow thermal cycle to 815 C. At low cyclic stresses and strains more common in hypersonic applications, environment-assisted surface cracking limited fatigue resistance. This damage mechanism was most acute for out-of-phase nonisothermal cycles having extended cycle periods and the ascent mission cycle. A simple linear fraction damage model was employed to help understand this damage mechanism. Time-dependent environmental damage was found to strongly influence out-of-phase and mission life, with mechanical cycling damage due to the combination of external loading and CTE mismatch stresses playing a smaller role. The mechanical cycling and sustained loads in the mission cycle also had a smaller role.

Modelling cell cycle synchronisation in networks of coupled radial glial cells.

PubMed

Barrack, Duncan S; Thul, Rüdiger; Owen, Markus R

2015-07-21

Radial glial cells play a crucial role in the embryonic mammalian brain. Their proliferation is thought to be controlled, in part, by ATP mediated calcium signals. It has been hypothesised that these signals act to locally synchronise cell cycles, so that clusters of cells proliferate together, shedding daughter cells in uniform sheets. In this paper we investigate this cell cycle synchronisation by taking an ordinary differential equation model that couples the dynamics of intracellular calcium and the cell cycle and extend it to populations of cells coupled via extracellular ATP signals. Through bifurcation analysis we show that although ATP mediated calcium release can lead to cell cycle synchronisation, a number of other asynchronous oscillatory solutions including torus solutions dominate the parameter space and cell cycle synchronisation is far from guaranteed. Despite this, numerical results indicate that the transient and not the asymptotic behaviour of the system is important in accounting for cell cycle synchronisation. In particular, quiescent cells can be entrained on to the cell cycle via ATP mediated calcium signals initiated by a driving cell and crucially will cycle in near synchrony with the driving cell for the duration of neurogenesis. This behaviour is highly sensitive to the timing of ATP release, with release at the G1/S phase transition of the cell cycle far more likely to lead to near synchrony than release during mid G1 phase. This result, which suggests that ATP release timing is critical to radial glia cell cycle synchronisation, may help us to understand normal and pathological brain development. Copyright © 2015 Elsevier Ltd. All rights reserved.

How Chemical Synthesis of Ubiquitin Conjugates Helps To Understand Ubiquitin Signal Transduction.

PubMed

Hameed, Dharjath S; Sapmaz, Aysegul; Ovaa, Huib

2017-03-15

Ubiquitin (Ub) is a small post-translational modifier protein involved in a myriad of biochemical processes including DNA damage repair, proteasomal proteolysis, and cell cycle control. Ubiquitin signaling pathways have not been completely deciphered due to the complex nature of the enzymes involved in ubiquitin conjugation and deconjugation. Hence, probes and assay reagents are important to get a better understanding of this pathway. Recently, improvements have been made in synthesis procedures of Ub derivatives. In this perspective, we explain various research reagents available and how chemical synthesis has made an important contribution to Ub research.

The Second State of the Carbon Cycle Report: A Scientific Basis for Policy and Management Decisions

NASA Astrophysics Data System (ADS)

Birdsey, R.; Mayes, M. A.; Reed, S.; Najjar, R.; Romero-Lankao, P.

2017-12-01

The second "State of the Carbon Cycle of North America Report" (SOCCR-2) includes an overview of the North American carbon budget and future projections, the consequences of changes to the carbon budget, details of the carbon budget in major terrestrial and aquatic ecosystems (including coastal ocean waters), information about anthropogenic drivers, and implications for policy and carbon management. SOCCR-2 includes new focus areas such as soil carbon, arctic and boreal ecosystems, tribal lands, and greater emphasis on aquatic systems and the role of societal drivers and decision making on the carbon cycle. In addition, methane is considered to a greater extent than before. SOCCR-2 will contribute to the next U.S. National Climate Assessment, as well as providing information to support science-based management decisions and policies that include climate change mitigation and adaptation in Canada, the United States, and Mexico. Although the Report is still in the review process, preliminary findings indicate that North America is a net emitter of carbon dioxide and methane to the atmosphere, and that natural sinks offset about 25% of emitted carbon dioxide. Combustion of fossil fuels represents the largest source of emissions, but show a decreasing trend over the last decade and a lower share (20%) of the global total compared with the previous decade. Forests, soils, grasslands, and coastal oceans comprise the largest carbon sinks, while emissions from inland waters are a significant source of carbon dioxide. The Report also documents the lateral transfers of carbon among terrestrial ecosystems and from terrestrial to near-coastal ecosystems, to complete the carbon cycle accounting. Further, the Report explores the consequences of rising atmospheric carbon dioxide on terrestrial and oceanic systems, and the capacity of these systems to continue to act as carbon sinks based on the drivers of future carbon cycle changes, including carbon-climate feedbacks, atmospheric composition, nutrient availability, and human activity and management decisions. SOCCR-2 highlights key data gaps in carbon accounting frameworks, uncertainties in modeling and estimation approaches, and integrated frameworks for improving our understanding of the North American carbon cycle.

Observation of Hydrological Processes Using Remote Sensing. Chapter 2.14; Volume 2: The Science of Hydrology

NASA Technical Reports Server (NTRS)

Wilder, Peter (Editor); Su, Z.; Robeling, R. A.; Schulz, J.; Holleman, I.; Levizzani, V.; Timmermans, W. J.; Rott, H.; Mognard-Campbell, N.; de Jeu, R.;

From the Last Interglacial to the Anthropocene: Modelling a Complete Glacial Cycle (PalMod)

NASA Astrophysics Data System (ADS)

Brücher, Tim; Latif, Mojib

2017-04-01

We will give a short overview and update on the current status of the national climate modelling initiative PalMod (Paleo Modelling, www.palmod.de). PalMod focuses on the understanding of the climate system dynamics and its variability during the last glacial cycle. The initiative is funded by the German Federal Ministry of Education and Research (BMBF) and its specific topics are: (i) to identify and quantify the relative contributions of the fundamental processes which determined the Earth's climate trajectory and variability during the last glacial cycle, (ii) to simulate with comprehensive Earth System Models (ESMs) the climate from the peak of the last interglacial - the Eemian warm period - up to the present, including the changes in the spectrum of variability, and (iii) to assess possible future climate trajectories beyond this century during the next millennia with sophisticated ESMs tested in such a way. The research is intended to be conducted over a period of 10 years, but with shorter funding cycles. PalMod kicked off in February 2016. The first phase focuses on the last deglaciation (app. the last 23.000 years). From the ESM perspective PalMod pushes forward model development by coupling ESM with dynamical ice sheet models. Computer scientists work on speeding up climate models using different concepts (like parallelisation in time) and one working group is dedicated to perform a comprehensive data synthesis to validate model performance. The envisioned approach is innovative in three respects. First, the consortium aims at simulating a full glacial cycle in transient mode and with comprehensive ESMs which allow full interactions between the physical and biogeochemical components of the Earth system, including ice sheets. Second, we shall address climate variability during the last glacial cycle on a large range of time scales, from interannual to multi-millennial, and attempt to quantify the relative contributions of external forcing and processes internal to the Earth system to climate variability at different time scales. Third, in order to achieve a higher level of understanding of natural climate variability at time scales of millennia, its governing processes and implications for the future climate, we bring together three different research communities: the Earth system modeling community, the proxy data community and the computational science community. The consortium consists of 18 partners including all major modelling centers within Germany. The funding comprises approximately 65 PostDoc positions and more than 120 scientists are involved. PalMod is coordinated at the Helmholtz Centre for Ocean Research Kiel (GEOMAR).

Microwave Remote Sensing and the Cold Land Processes Field Experiment

NASA Technical Reports Server (NTRS)

Kim, Edward J.; Cline, Don; Davis, Bert; Hildebrand, Peter H. (Technical Monitor)

2001-01-01

The Cold Land Processes Field Experiment (CLPX) has been designed to advance our understanding of the terrestrial cryosphere. Developing a more complete understanding of fluxes, storage, and transformations of water and energy in cold land areas is a critical focus of the NASA Earth Science Enterprise Research Strategy, the NASA Global Water and Energy Cycle (GWEC) Initiative, the Global Energy and Water Cycle Experiment (GEWEX), and the GEWEX Americas Prediction Project (GAPP). The movement of water and energy through cold regions in turn plays a large role in ecological activity and biogeochemical cycles. Quantitative understanding of cold land processes over large areas will require synergistic advancements in 1) understanding how cold land processes, most comprehensively understood at local or hillslope scales, extend to larger scales, 2) improved representation of cold land processes in coupled and uncoupled land-surface models, and 3) a breakthrough in large-scale observation of hydrologic properties, including snow characteristics, soil moisture, the extent of frozen soils, and the transition between frozen and thawed soil conditions. The CLPX Plan has been developed through the efforts of over 60 interested scientists that have participated in the NASA Cold Land Processes Working Group (CLPWG). This group is charged with the task of assessing, planning and implementing the required background science, technology, and application infrastructure to support successful land surface hydrology remote sensing space missions. A major product of the experiment will be a comprehensive, legacy data set that will energize many aspects of cold land processes research. The CLPX will focus on developing the quantitative understanding, models, and measurements necessary to extend our local-scale understanding of water fluxes, storage, and transformations to regional and global scales. The experiment will particularly emphasize developing a strong synergism between process-oriented understanding, land surface models and microwave remote sensing. The experimental design is a multi-sensor, multi-scale (1-ha to 160,000 km ^ {2}) approach to providing the comprehensive data set necessary to address several experiment objectives. A description focusing on the microwave remote sensing components (ground, airborne, and spaceborne) of the experiment will be presented.

Stable isotopes of transition and post-transition metals as tracers in environmental studies

USGS Publications Warehouse

Bullen, Thomas D.; Baskaran, Mark

2011-01-01

The transition and post-transition metals, which include the elements in Groups 3–12 of the Periodic Table, have a broad range of geological and biological roles as well as industrial applications and thus are widespread in the environment. Interdisciplinary research over the past decade has resulted in a broad understanding of the isotope systematics of this important group of elements and revealed largely unexpected variability in isotope composition for natural materials. Significant kinetic and equilibrium isotope fractionation has been observed for redox sensitive metals such as iron, chromium, copper, molybdenum and mercury, and for metals that are not redox sensitive in nature such as cadmium and zinc. In the environmental sciences, the isotopes are increasingly being used to understand important issues such as tracing of metal contaminant sources and fates, unraveling metal redox cycles, deciphering metal nutrient pathways and cycles, and developing isotope biosignatures that can indicate the role of biological activity in ancient and modern planetary systems.

Chikungunya Virus–Vector Interactions

PubMed Central

Coffey, Lark L.; Failloux, Anna-Bella; Weaver, Scott C.

2014-01-01

Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that causes chikungunya fever, a severe, debilitating disease that often produces chronic arthralgia. Since 2004, CHIKV has emerged in Africa, Indian Ocean islands, Asia, Europe, and the Americas, causing millions of human infections. Central to understanding CHIKV emergence is knowledge of the natural ecology of transmission and vector infection dynamics. This review presents current understanding of CHIKV infection dynamics in mosquito vectors and its relationship to human disease emergence. The following topics are reviewed: CHIKV infection and vector life history traits including transmission cycles, genetic origins, distribution, emergence and spread, dispersal, vector competence, vector immunity and microbial interactions, and co-infection by CHIKV and other arboviruses. The genetics of vector susceptibility and host range changes, population heterogeneity and selection for the fittest viral genomes, dual host cycling and its impact on CHIKV adaptation, viral bottlenecks and intrahost diversity, and adaptive constraints on CHIKV evolution are also discussed. The potential for CHIKV re-emergence and expansion into new areas and prospects for prevention via vector control are also briefly reviewed. PMID:25421891

Guidelines for Developing Spacecraft Structural Requirements: A Thermal and Environmental Perspective

NASA Technical Reports Server (NTRS)

Holladay, Jon; Day, Greg; Gill, Larry

2004-01-01

Spacecraft are typically designed with a primary focus on weight in order to meet launch vehicle performance parameters. However, for pressurized and/or man-rated spacecraft, it is also necessary to have an understanding of the vehicle operating environments to properly size the pressure vessel. Proper sizing of the pressure vessel requires an understanding of the space vehicle's life cycle and compares the physical design optimization (weight and launch "cost") to downstream operational complexity and total life cycle cost. This paper will provide an overview of some major environmental design drivers and provide examples for calculating the optimal design pressure versus a selected set of design parameters related to thermal and environmental perspectives. In addition, this paper will provide a generic set of cracking pressures for both positive and negative pressure relief valves that encompasses worst case environmental effects for a variety of launch / landing sites. Finally, several examples are included to highlight pressure relief set points and vehicle weight impacts for a selected set of orbital missions.

Cell Cycle Control in the Early Embryonic Development of Aquatic Animal Species

PubMed Central

Siefert, Joseph C.; Clowdus, Emily A.; Sansam, Christopher L.

2016-01-01

The cell cycle is integrated with many aspects of embryonic development. Not only is proper control over the pace of cell proliferation important, but also the timing of cell cycle progression is coordinated with transcription, cell migration, and cell differentiation. Due to the ease with which the embryos of aquatic organisms can be observed and manipulated, they have been a popular choice for embryologists throughout history. In the cell cycle field, aquatic organisms have been extremely important because they have played a major role in the discovery and analysis of key regulators of the cell cycle. In particular, the frog Xenopus laevis has been instrumental for understanding how the basic embryonic cell cycle is regulated. More recently, the zebrafish has been used to understand how the cell cycle is remodeled during vertebrate development and how it is regulated during morphogenesis. This review describes how some of the unique strengths of aquatic species have been leveraged for cell cycle research and suggests how species such as Xenopus and zebrafish will continue to reveal the roles of the cell cycle in human biology and disease. PMID:26475527

Playing with the cell cycle to build the spinal cord.

PubMed

Molina, Angie; Pituello, Fabienne

2017-12-01

A fundamental issue in nervous system development and homeostasis is to understand the mechanisms governing the balance between the maintenance of proliferating progenitors versus their differentiation into post-mitotic neurons. Accumulating data suggest that the cell cycle and core regulators of the cell cycle machinery play a major role in regulating this fine balance. Here, we focus on the interplay between the cell cycle and cellular and molecular events governing spinal cord development. We describe the existing links between the cell cycle and interkinetic nuclear migration (INM). We show how the different morphogens patterning the neural tube also regulate the cell cycle machinery to coordinate proliferation and patterning. We give examples of how cell cycle core regulators regulate transcriptionally, or post-transcriptionally, genes involved in controlling the maintenance versus the differentiation of neural progenitors. Finally, we describe the changes in cell cycle kinetics occurring during neural tube patterning and at the time of neuronal differentiation, and we discuss future research directions to better understand the role of the cell cycle in cell fate decisions. Copyright © 2017 Elsevier Inc. All rights reserved.

Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans

PubMed Central

Sierra, Crystal S.; Haase, Steven B.

2016-01-01

The pathogenic yeast Cryptococcus neoformans causes fungal meningitis in immune-compromised patients. Cell proliferation in the budding yeast form is required for C. neoformans to infect human hosts, and virulence factors such as capsule formation and melanin production are affected by cell-cycle perturbation. Thus, understanding cell-cycle regulation is critical for a full understanding of virulence factors for disease. Our group and others have demonstrated that a large fraction of genes in Saccharomyces cerevisiae is expressed periodically during the cell cycle, and that proper regulation of this transcriptional program is important for proper cell division. Despite the evolutionary divergence of the two budding yeasts, we found that a similar percentage of all genes (~20%) is periodically expressed during the cell cycle in both yeasts. However, the temporal ordering of periodic expression has diverged for some orthologous cell-cycle genes, especially those related to bud emergence and bud growth. Genes regulating DNA replication and mitosis exhibited a conserved ordering in both yeasts, suggesting that essential cell-cycle processes are conserved in periodicity and in timing of expression (i.e. duplication before division). In S. cerevisiae cells, we have proposed that an interconnected network of periodic transcription factors (TFs) controls the bulk of the cell-cycle transcriptional program. We found that temporal ordering of orthologous network TFs was not always maintained; however, the TF network topology at cell-cycle commitment appears to be conserved in C. neoformans. During the C. neoformans cell cycle, DNA replication genes, mitosis genes, and 40 genes involved in virulence are periodically expressed. Future work toward understanding the gene regulatory network that controls cell-cycle genes is critical for developing novel antifungals to inhibit pathogen proliferation. PMID:27918582

Cyclical parthenogenesis and viviparity in aphids as evolutionary novelties.

PubMed

Davis, Gregory K

2012-09-01

Evolutionary novelties represent challenges to biologists, particularly those who would like to understand the developmental and genetic changes responsible for their appearance. Most modern aphids possess two apparent evolutionary novelties: cyclical parthenogenesis (a life cycle with both sexual and asexual phases) and viviparity (internal development and live birth of progeny) in their asexual phase. Here I discuss the evolution of these apparent novelties from a developmental standpoint. Although a full understanding of the evolution of cyclical parthenogenesis and viviparity in aphids can seem a daunting task, these complex transitions can at least be broken down into a handful of steps. I argue that these should include the following: a differentiation of two developmentally distinct oocytes; de novo synthesis of centrosomes and modification of meiosis during asexual oogenesis; a loss or bypass of any cell cycle arrest and changes in key developmental events during viviparous oogenesis; and a change in how mothers specify the sexual vs. asexual fates of their progeny. Grappling with the nature of such steps and the order in which they occurred ought to increase our understanding and reduce the apparent novelty of complex evolutionary transitions. © 2012 Wiley Periodicals, Inc.

Dynamics and Predictability of Tropical Cyclone Genesis, Structure and Intensity Change

DTIC Science & Technology

2012-09-30

analyses and forecasts of tropical cyclones, including genesis, intensity change, and extratropical transition. A secondary objective is to understand... storm -centered assimilation algorithm. Basic research in Report Documentation Page Form ApprovedOMB No. 0704-0188 Public reporting burden for the...COMPLETED For the four storms consider (Nuri, Jangmi, Sinlaku, and Hagupit), an 80-member EnKF has been cycled on observations (surface, rawinsondes, GPS

Land-related global habitability science issues

NASA Technical Reports Server (NTRS)

1983-01-01

The scientific investigation of the viewpoint of the biosphere that living organisms and their physical and chemical environment are bound, inseparable parts of one set of closely coupled global processes of the global biogeochemical system, life and life support cycles, is discussed as one of the major scientific challenges of the next decade by building from understanding land processes to interdisciplinary, holistic studies of biospheric dynamics including human impacts.

Implementation of 7e learning cycle model using technology based constructivist teaching (TBCT) approach to improve students' understanding achievment in mechanical wave material

NASA Astrophysics Data System (ADS)

Warliani, Resti; Muslim, Setiawan, Wawan

2017-05-01

This study aims to determine the increase in the understanding achievement in senior high school students through the Learning Cycle 7E with technology based constructivist teaching approach (TBCT). This study uses a pretest-posttest control group design. The participants were 67 high school students of eleventh grade in Garut city with two class in control and experiment class. Experiment class applying the Learning Cycle 7E through TBCT approach and control class applying the 7E Learning Cycle through Constructivist Teaching approach (CT). Data collection tools from mechanical wave concept test with totally 22 questions with reability coefficient was found 0,86. The findings show the increase of the understanding achievement of the experiment class is in the amount of 0.51 was higher than the control class that is in the amount of 0.33.

Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle

PubMed Central

Zhang, Youjun; Beard, Katherine F. M.; Swart, Corné; Bergmann, Susan; Krahnert, Ina; Nikoloski, Zoran; Graf, Alexander; Ratcliffe, R. George; Sweetlove, Lee J.; Fernie, Alisdair R.; Obata, Toshihiro

2017-01-01

Protein complexes of sequential metabolic enzymes, often termed metabolons, may permit direct channelling of metabolites between the enzymes, providing increased control over metabolic pathway fluxes. Experimental evidence supporting their existence in vivo remains fragmentary. In the present study, we test binary interactions of the proteins constituting the plant tricarboxylic acid (TCA) cycle. We integrate (semi-)quantitative results from affinity purification-mass spectrometry, split-luciferase and yeast-two-hybrid assays to generate a single reliability score for assessing protein–protein interactions. By this approach, we identify 158 interactions including those between catalytic subunits of sequential enzymes and between subunits of enzymes mediating non-adjacent reactions. We reveal channelling of citrate and fumarate in isolated potato mitochondria by isotope dilution experiments. These results provide evidence for a functional TCA cycle metabolon in plants, which we discuss in the context of contemporary understanding of this pathway in other kingdoms. PMID:28508886

The elusive life cycle of scyphozoan jellyfish - metagenesis revisited

NASA Astrophysics Data System (ADS)

Ceh, Janja; Gonzalez, Jorge; Pacheco, Aldo S.; Riascos, José M.

2015-07-01

Massive proliferations of scyphozoan jellyfish considerably affect human industries and irreversibly change food webs. Efforts to understand the role of jellyfish in marine ecosystems are based on a life cycle model described 200 years ago. According to this paradigm the pelagic medusae is considered seasonal and alternates with the benthic polyp stage from which it derives. However, we provide evidence that a) the occurrence of several species of medusae is not restricted to a season in the year, they overwinter, b) polyp- and medusa generations are neither temporally nor spatially separated, and c) “metagenesis” which is defined as the alternation between sexual and asexual generations does not always occur. Hence we recommend additions to the current model and argue that the scyphozoan life cycle should be considered multi-modal, rather than metagenetic. The implications of these findings for jellyfish proliferations, including possible consequences and associated environmental drivers, are discussed.

From Rivers to Oceans and Back: Linking Models to Encompass the Full Salmon Life Cycle

NASA Astrophysics Data System (ADS)

Danner, E.; Hendrix, N.; Martin, B.; Lindley, S. T.

2016-02-01

Pacific salmon are a promising study subject for investigating the linkages between freshwater and coastal ocean ecosystems. Salmon use a wide range of habitats throughout their life cycle as they move with water from mountain streams, mainstem rivers, estuaries, bays, and coastal oceans, with adult fish swimming back through the same migration route they took as juveniles. Conditions in one habitat can have growth and survival consequences that manifest in the following habitat, so is key that full life cycle models are used to further our understanding salmon population dynamics. Given the wide range of habitats and potential stressors, this approach requires the coordination of a multidisciplinary suite of physical and biological models, including climate, hydrologic, hydraulic, food web, circulation, bioenergetic, and ecosystem models. Here we present current approaches to linking physical and biological models that capture the foundational drivers for salmon in complex and dynamic systems.

Transcriptome analyses of the Giardia lamblia life cycle

PubMed Central

Birkeland, Shanda R.; Preheim, Sarah P.; Davids, Barbara J.; Cipriano, Michael J.; Palm, Daniel; Reiner, David S.; Svärd, Staffan G.; Gillin, Frances D.; McArthur, Andrew G.

2010-01-01

We quantified mRNA abundance from 10 stages in the Giardia lamblia life cycle in vitro using Serial Analysis of Gene Expression (SAGE). 163 abundant transcripts were expressed constitutively. 71 transcripts were upregulated specifically during excystation and 42 during encystation. Nonetheless, the transcriptomes of cysts and trophozoites showed major differences. SAGE detected co-expressed clusters of 284 transcripts differentially expressed in cysts and excyzoites and 287 transcripts in vegetative trophozoites and encysting cells. All clusters included known genes and pathways as well as proteins unique to Giardia or diplomonads. SAGE analysis of the Giardia life cycle identified a number of kinases, phosphatases, and DNA replication proteins involved in excystation and encystation, which could be important for examining the roles of cell signaling in giardial differentiation. Overall, these data pave the way for directed gene discovery and a better understanding of the biology of Giardia lamblia. PMID:20570699

The elusive life cycle of scyphozoan jellyfish – metagenesis revisited

PubMed Central

Ceh, Janja; Gonzalez, Jorge; Pacheco, Aldo S.; Riascos, José M.

2015-01-01

Massive proliferations of scyphozoan jellyfish considerably affect human industries and irreversibly change food webs. Efforts to understand the role of jellyfish in marine ecosystems are based on a life cycle model described 200 years ago. According to this paradigm the pelagic medusae is considered seasonal and alternates with the benthic polyp stage from which it derives. However, we provide evidence that a) the occurrence of several species of medusae is not restricted to a season in the year, they overwinter, b) polyp- and medusa generations are neither temporally nor spatially separated, and c) “metagenesis” which is defined as the alternation between sexual and asexual generations does not always occur. Hence we recommend additions to the current model and argue that the scyphozoan life cycle should be considered multi-modal, rather than metagenetic. The implications of these findings for jellyfish proliferations, including possible consequences and associated environmental drivers, are discussed. PMID:26153534

The elusive life cycle of scyphozoan jellyfish--metagenesis revisited.

PubMed

Ceh, Janja; Gonzalez, Jorge; Pacheco, Aldo S; Riascos, José M

2015-07-08

Massive proliferations of scyphozoan jellyfish considerably affect human industries and irreversibly change food webs. Efforts to understand the role of jellyfish in marine ecosystems are based on a life cycle model described 200 years ago. According to this paradigm the pelagic medusae is considered seasonal and alternates with the benthic polyp stage from which it derives. However, we provide evidence that a) the occurrence of several species of medusae is not restricted to a season in the year, they overwinter, b) polyp- and medusa generations are neither temporally nor spatially separated, and c) "metagenesis" which is defined as the alternation between sexual and asexual generations does not always occur. Hence we recommend additions to the current model and argue that the scyphozoan life cycle should be considered multi-modal, rather than metagenetic. The implications of these findings for jellyfish proliferations, including possible consequences and associated environmental drivers, are discussed.

Healthy clocks, healthy body, healthy mind.

PubMed

Reddy, Akhilesh B; O'Neill, John S

2010-01-01

Circadian rhythms permeate mammalian biology. They are manifested in the temporal organisation of behavioural, physiological, cellular and neuronal processes. Whereas it has been shown recently that these approximately 24-hour cycles are intrinsic to the cell and persist in vitro, internal synchrony in mammals is largely governed by the hypothalamic suprachiasmatic nuclei that facilitate anticipation of, and adaptation to, the solar cycle. Our timekeeping mechanism is deeply embedded in cell function and is modelled as a network of transcriptional and/or post-translational feedback loops. Concurrent with this, we are beginning to understand how this ancient timekeeper interacts with myriad cell systems, including signal transduction cascades and the cell cycle, and thus impacts on disease. An exemplary area where this knowledge is rapidly expanding and contributing to novel therapies is cancer, where the Period genes have been identified as tumour suppressors. In more complex disorders, where aetiology remains controversial, interactions with the clockwork are only now starting to be appreciated.

Population cycles: generalities, exceptions and remaining mysteries

PubMed Central

2018-01-01

Population cycles are one of nature's great mysteries. For almost a hundred years, innumerable studies have probed the causes of cyclic dynamics in snowshoe hares, voles and lemmings, forest Lepidoptera and grouse. Even though cyclic species have very different life histories, similarities in mechanisms related to their dynamics are apparent. In addition to high reproductive rates and density-related mortality from predators, pathogens or parasitoids, other characteristics include transgenerational reduced reproduction and dispersal with increasing-peak densities, and genetic similarity among populations. Experiments to stop cyclic dynamics and comparisons of cyclic and noncyclic populations provide some understanding but both reproduction and mortality must be considered. What determines variation in amplitude and periodicity of population outbreaks remains a mystery. PMID:29563267

Acetate and succinate production in amoebae, helminths, diplomonads, trichomonads and trypanosomatids: common and diverse metabolic strategies used by parasitic lower eukaryotes.

PubMed

Bringaud, F; Ebikeme, C; Boshart, M

2010-08-01

Parasites that often grow anaerobically in their hosts have adopted a fermentative strategy relying on the production of partially oxidized end products, including lactate, glycerol, ethanol, succinate and acetate. This review focuses on recent progress in understanding acetate production in protist parasites, such as amoebae, diplomonads, trichomonads, trypanosomatids and in the metazoan parasites helminths, as well as the succinate production pathway(s) present in some of them. We also describe the unconventional organisation of the tricarboxylic acid cycle associated with the fermentative strategy adopted by the procyclic trypanosomes, which may resemble the probable structure of the primordial TCA cycle in prokaryotes.

The Passive Aggressive Conflict Cycle

ERIC Educational Resources Information Center

Whitson, Signe

2013-01-01

Understanding the Passive Aggressive Conflict Cycle (PACC) helps observers to be able to look beyond behavior and better understand what is occurring beneath the surface. This article presents a real-life example of a seemingly minor conflict between a teacher and child that elicited an apparent major overreaction by the adult. Also provided is a…

North America's net terrestrial CO2 exchange with the atmosphere 1990-2009

Treesearch

A.W. King; R.J. Andres; K J. Davis; M. Hafer; D.J. Hayes; D.N. Huntzinger; B. de Jong; W.A. Kurz; A.D. McGuire; R. Vargas; Y. Wei; T.O. West; C.W. Woodall

2015-01-01

Scientific understanding of the global carbon cycle is required for developing national and international policy to mitigate fossil fuel CO2 emissions by managing terrestrial carbon uptake. Toward that understanding and as a contribution to the REgional Carbon Cycle Assessment and Processes (RECCAP) project, this paper provides a synthesis of net...

Studying the Water Cycle in an Environmental Context: The "Blue Planet" Program.

ERIC Educational Resources Information Center

Ben-zvi-assaraf, Orit; Orion, Nir

The Blue Planet program aims to develop an understanding of and insight into the environment among students by introducing environmental problems such as pollution. This paper presents a study investigating junior high school students' previous knowledge and understanding of environmental issues and perceptions on the nature of the water cycle.…

The Life Cycle of the Child Care Center -- Understanding Center Growth and Development.

ERIC Educational Resources Information Center

Bess, Gary; Ratekin, Cindy

2001-01-01

Identifies the seven stages of the life cycle for child care centers: entrepreneurial; development; formalization; maturity; stagnation; death; and renewal. Suggests that critical transition points exist for organizational development, and that, if they are aware of and understand each stage of development, administrators may intervene at those…

The Comparative Effects of Prediction/Discussion-Based Learning Cycle, Conceptual Change Text, and Traditional Instructions on Student Understanding of Genetics

NASA Astrophysics Data System (ADS)

Yilmaz, Diba; Tekkaya, Ceren; Sungur, Semra

2011-03-01

The present study examined the comparative effects of a prediction/discussion-based learning cycle, conceptual change text (CCT), and traditional instructions on students' understanding of genetics concepts. A quasi-experimental research design of the pre-test-post-test non-equivalent control group was adopted. The three intact classes, taught by the same science teacher, were randomly assigned as prediction/discussion-based learning cycle class (N = 30), CCT class (N = 25), and traditional class (N = 26). Participants completed the genetics concept test as pre-test, post-test, and delayed post-test to examine the effects of instructional strategies on their genetics understanding and retention. While the dependent variable of this study was students' understanding of genetics, the independent variables were time (Time 1, Time 2, and Time 3) and mode of instruction. The mixed between-within subjects analysis of variance revealed that students in both prediction/discussion-based learning cycle and CCT groups understood the genetics concepts and retained their knowledge significantly better than students in the traditional instruction group.

The geobiological nitrogen cycle: From microbes to the mantle.

PubMed

Zerkle, A L; Mikhail, S

2017-05-01

Nitrogen forms an integral part of the main building blocks of life, including DNA, RNA, and proteins. N 2 is the dominant gas in Earth's atmosphere, and nitrogen is stored in all of Earth's geological reservoirs, including the crust, the mantle, and the core. As such, nitrogen geochemistry is fundamental to the evolution of planet Earth and the life it supports. Despite the importance of nitrogen in the Earth system, large gaps remain in our knowledge of how the surface and deep nitrogen cycles have evolved over geologic time. Here, we discuss the current understanding (or lack thereof) for how the unique interaction of biological innovation, geodynamics, and mantle petrology has acted to regulate Earth's nitrogen cycle over geologic timescales. In particular, we explore how temporal variations in the external (biosphere and atmosphere) and internal (crust and mantle) nitrogen cycles could have regulated atmospheric pN 2 . We consider three potential scenarios for the evolution of the geobiological nitrogen cycle over Earth's history: two in which atmospheric pN 2 has changed unidirectionally (increased or decreased) over geologic time and one in which pN 2 could have taken a dramatic deflection following the Great Oxidation Event. It is impossible to discriminate between these scenarios with the currently available models and datasets. However, we are optimistic that this problem can be solved, following a sustained, open-minded, and multidisciplinary effort between surface and deep Earth communities. © 2017 The Authors Geobiology Published by John Wiley & Sons Ltd.

Litter decomposition, N2-fixer abundance, and microbial dynamics govern tropical dry forest recovery to land use change

NASA Astrophysics Data System (ADS)

Trierweiler, A.; Powers, J. S.; Xu, X.; Gei, M. G.; Medvigy, D.

2017-12-01

As one of the most threatened tropical biomes, Seasonal Dry Tropical Forests (TDF) have undergone extensive land-use change. However, some areas are undergoing recovery into secondary forests. Despite their broad distribution (42% of tropical forests), they are under-studied compared to wet tropical forests and our understanding of their biogeochemical cycling and belowground processes are limited. Here, we use models along with field measurements to improve our understanding of nutrient cycling and limitation in secondary TDFs. We ask (1) Is there modeling evidence that tropical dry forests can become nutrient limited? (2) What are the most important mechanisms employed to avoid nutrient limitation? (3) How might climate change alter biogeochemical cycling and nutrient limitation in recovering TDF? We use a new version of the Ecosystem Demography (ED2) model that has been recently parameterized for TDFs and incorporates a range of plant functional groups (including deciduousness and N2-fixation) and multiple resource constraints (carbon, nitrogen, phosphorus, and water). In the model, plants then can dynamically adjust their carbon allocation and nutrient acquisition strategies using N2-fixing bacteria and mycorrhizal fungi according to the nutrient limitation status. We ran the model for a nutrient gradient of field sites in Costa Rica and explored the sensitivity of nutrient limitation to key mechanisms including litter respiration, N resorption, N2-fixation, and overflow respiration. Future runs will evaluate how CO2 and climate change affect recovering TDFs. We found increasing nutrient limitation across the nutrient gradient of sites. Nitrogen limitation dominated the nutrient limitation signal. In the model, forest litter accumulation was negatively correlated with site fertility in Costa Rican forests. Our sensitivity analyses indicate that N2-fixer abundance, decomposition rates, and adding more explicit microbial dynamics are key factors in overcoming this limitation. These insights improve our understanding of how TDFs function and are especially relevant to the management of recovering secondary TDFs by highlighting potential bottlenecks in the recovery process.

Radioisotope tracer approach for understanding the impacts of global change-induced pedoturbation on soil C dynamics

NASA Astrophysics Data System (ADS)

Gonzalez-Meler, M. A.; Sturchio, N. C.; Sanchez-de Leon, Y.; Blanc-Betes, E.; Taneva, L.; Poghosyan, A.; Norby, R. J.; Filley, T. R.; Guilderson, T. P.; Welker, J. M.

2010-12-01

Biogeochemical carbon-cycle feedbacks to climate are apparent but uncertain, primarily because of gaps in mechanistic understanding on the ecosystem processes that drive carbon cycling and storage in terrestrial ecosystems, particularly in soils. Recent findings are increasingly recognizing the interaction between soil biota and the soil physical environment. Soil carbon turnover is partly determined by burial of organic matter and its physical and chemical protection. These factors are potentially affected by changes in climate (freezing-thawing or wet-drying cycles) or ecosystem structure including biological invasions. A major impediment to understanding dynamics of soil C in terrestrial systems is our inability to measure soil physical processes such as soil mixing rates or turnover of soil structures, including aggregates. Here we present a multiple radioisotope tracer approach (naturally occurring and man-made) to measure soil mixing rates in response to global change. We will present evidence of soil mixing rate changes in a temperate forest exposed to increased levels of atmospheric CO2 and in a tundra ecosystem exposed to increased thermal insulation. In both cases, radioisotope tracers proved to be an effective way to measure effects of global change on pedoturbation. Results also provided insights into the specific mechanisms involved in the responses. Elevated CO2 resulted in deeper soil mixing cells (increased by about 5cm on average) when compared to control soils as a consequence of changes in biota (increased root growth, higher earthworm density). In the tundra, soil warming induced higher rates of cryoturbation, resulting in what appears to be a net uplift of organic matter to the surface thereby exposing deeper C to decomposers. In both cases, global change factors affected the vertical distribution of C and changed the amount of bulk soil actively involved in soil processes. As a consequence, comparisons of C budgets to a given soil depth in response to global change factors may be misleading if they do not account for the depth change in the soil mixing cells.

Dynamics and function of the tear film in relation to the blink cycle.

PubMed

Braun, R J; King-Smith, P E; Begley, C G; Li, Longfei; Gewecke, N R

2015-03-01

Great strides have recently been made in quantitative measurements of tear film thickness and thinning, mathematical modeling thereof and linking these to sensory perception. This paper summarizes recent progress in these areas and reports on new results. The complete blink cycle is used as a framework that attempts to unify the results that are currently available. Understanding of tear film dynamics is aided by combining information from different imaging methods, including fluorescence, retroillumination and a new high-speed stroboscopic imaging system developed for studying the tear film during the blink cycle. During the downstroke of the blink, lipid is compressed as a thick layer just under the upper lid which is often released as a narrow thick band of lipid at the beginning of the upstroke. "Rippling" of the tear film/air interface due to motion of the tear film over the corneal surface, somewhat like the flow of water in a shallow stream over a rocky streambed, was observed during lid motion and treated theoretically here. New mathematical predictions of tear film osmolarity over the exposed ocular surface and in tear breakup are presented; the latter is closely linked to new in vivo observations. Models include the effects of evaporation, osmotic flow through the cornea and conjunctiva, quenching of fluorescence, tangential flow of aqueous tears and diffusion of tear solutes and fluorescein. These and other combinations of experiment and theory increase our understanding of the fluid dynamics of the tear film and its potential impact on the ocular surface. Copyright © 2014 Elsevier Ltd. All rights reserved.

Dynamics and function of the tear film in relation to the blink cycle

PubMed Central

Braun, R.J.; King-Smith, P.E.; Begley, C.G.; Li, Longfei; Gewecke, N.R.

2014-01-01

Great strides have recently been made in quantitative measurements of tear film thickness and thinning, mathematical modeling thereof and linking these to sensory perception. This paper summarizes recent progress in these areas and reports on new results. The complete blink cycle is used as a framework that attempts to unify the results that are currently available. Understanding of tear film dynamics is aided by combining information from different imaging methods, including fluorescence, retroillumination and a new high-speed stroboscopic imaging system developed for studying the tear film during the blink cycle. During the downstroke of the blink, lipid is compressed as a thick layer just under the upper lid which is often released as a narrow thick band of lipid at the beginning of the upstroke. “Rippling” of the tear film/air interface due to motion of the tear film over the corneal surface, somewhat like the flow of water in a shallow stream over a rocky streambed, was observed during lid motion and treated theoretically here. New mathematical predictions of tear film osmolarity over the exposed ocular surface and in tear breakup are presented; the latter is closely linked to new in vivo observations. Models include the effects of evaporation, osmotic flow through the cornea and conjunctiva, quenching of fluorescence, tangential flow of aqueous tears and diffusion of tear solutes and fluorescein. These and other combinations of experiment and theory increase our understanding of the fluid dynamics of the tear film and its potential impact on the ocular surface. PMID:25479602

Terrestrial and marine perspectives on modeling organic matter degradation pathways.

PubMed

Burd, Adrian B; Frey, Serita; Cabre, Anna; Ito, Takamitsu; Levine, Naomi M; Lønborg, Christian; Long, Matthew; Mauritz, Marguerite; Thomas, R Quinn; Stephens, Brandon M; Vanwalleghem, Tom; Zeng, Ning

2016-01-01

Organic matter (OM) plays a major role in both terrestrial and oceanic biogeochemical cycles. The amount of carbon stored in these systems is far greater than that of carbon dioxide (CO2 ) in the atmosphere, and annual fluxes of CO2 from these pools to the atmosphere exceed those from fossil fuel combustion. Understanding the processes that determine the fate of detrital material is important for predicting the effects that climate change will have on feedbacks to the global carbon cycle. However, Earth System Models (ESMs) typically utilize very simple formulations of processes affecting the mineralization and storage of detrital OM. Recent changes in our view of the nature of this material and the factors controlling its transformation have yet to find their way into models. In this review, we highlight the current understanding of the role and cycling of detrital OM in terrestrial and marine systems and examine how this pool of material is represented in ESMs. We include a discussion of the different mineralization pathways available as organic matter moves from soils, through inland waters to coastal systems and ultimately into open ocean environments. We argue that there is strong commonality between aspects of OM transformation in both terrestrial and marine systems and that our respective scientific communities would benefit from closer collaboration. © 2015 John Wiley & Sons Ltd.

Pre-existence and emergence of drug resistance in a generalized model of intra-host viral dynamics.

PubMed

Alexander, Helen K; Bonhoeffer, Sebastian

2012-12-01

Understanding the source of drug resistance emerging within a treated patient is an important problem, from both clinical and basic evolutionary perspectives. Resistant mutants may arise de novo either before or after treatment is initiated, with different implications for prevention. Here we investigate this problem in the context of chronic viral diseases, such as human immunodeficiency virus (HIV) and hepatitis B and C viruses (HBV and HCV). We present a unified model of viral population dynamics within a host, which can capture a variety of viral life cycles. This allows us to identify which results generalize across various viral diseases, and which are sensitive to the particular virus's life cycle. Accurate analytical approximations are derived that allow for a solid understanding of the parameter dependencies in the system. We find that the mutation-selection balance attained prior to treatment depends on the step at which mutations occur and the viral trait that incurs the cost of resistance. Life cycle effects and key parameters, including mutation rate, infected cell death rate, cost of resistance, and drug efficacy, play a role in determining when mutations arising during treatment are important relative to those pre-existing. Copyright © 2012 Elsevier B.V. All rights reserved.

Nitrogen Cycling Responses to Mountain Pine Beetle Disturbance in a High Elevation Whitebark Pine Ecosystem

PubMed Central

Keville, Megan P.; Reed, Sasha C.; Cleveland, Cory C.

2013-01-01

Ecological disturbances can significantly affect biogeochemical cycles in terrestrial ecosystems, but the biogeochemical consequences of the extensive mountain pine beetle outbreak in high elevation whitebark pine (WbP) (Pinus albicaulis) ecosystems of western North America have not been previously investigated. Mountain pine beetle attack has driven widespread WbP mortality, which could drive shifts in both the pools and fluxes of nitrogen (N) within these ecosystems. Because N availability can limit forest regrowth, understanding how beetle-induced mortality affects N cycling in WbP stands may be critical to understanding the trajectory of ecosystem recovery. Thus, we measured above- and belowground N pools and fluxes for trees representing three different times since beetle attack, including unattacked trees. Litterfall N inputs were more than ten times higher under recently attacked trees compared to unattacked trees. Soil inorganic N concentrations also increased following beetle attack, potentially driven by a more than two-fold increase in ammonium (NH4 +) concentrations in the surface soil organic horizon. However, there were no significant differences in mineral soil inorganic N or soil microbial biomass N concentrations between attacked and unattacked trees, implying that short-term changes in N cycling in response to the initial stages of WbP attack were restricted to the organic horizon. Our results suggest that while mountain pine beetle attack drives a pulse of N from the canopy to the forest floor, changes in litterfall quality and quantity do not have profound effects on soil biogeochemical cycling, at least in the short-term. However, continuous observation of these important ecosystems will be crucial to determining the long-term biogeochemical effects of mountain pine beetle outbreaks. PMID:23755166

Nitrogen cycling responses to mountain pine beetle disturbance in a high elevation whitebark pine ecosystem.

PubMed

Keville, Megan P; Reed, Sasha C; Cleveland, Cory C

2013-01-01

Ecological disturbances can significantly affect biogeochemical cycles in terrestrial ecosystems, but the biogeochemical consequences of the extensive mountain pine beetle outbreak in high elevation whitebark pine (WbP) (Pinus albicaulis) ecosystems of western North America have not been previously investigated. Mountain pine beetle attack has driven widespread WbP mortality, which could drive shifts in both the pools and fluxes of nitrogen (N) within these ecosystems. Because N availability can limit forest regrowth, understanding how beetle-induced mortality affects N cycling in WbP stands may be critical to understanding the trajectory of ecosystem recovery. Thus, we measured above- and belowground N pools and fluxes for trees representing three different times since beetle attack, including unattacked trees. Litterfall N inputs were more than ten times higher under recently attacked trees compared to unattacked trees. Soil inorganic N concentrations also increased following beetle attack, potentially driven by a more than two-fold increase in ammonium (NH₄⁺) concentrations in the surface soil organic horizon. However, there were no significant differences in mineral soil inorganic N or soil microbial biomass N concentrations between attacked and unattacked trees, implying that short-term changes in N cycling in response to the initial stages of WbP attack were restricted to the organic horizon. Our results suggest that while mountain pine beetle attack drives a pulse of N from the canopy to the forest floor, changes in litterfall quality and quantity do not have profound effects on soil biogeochemical cycling, at least in the short-term. However, continuous observation of these important ecosystems will be crucial to determining the long-term biogeochemical effects of mountain pine beetle outbreaks.

Nitrogen cycling responses to mountain pine beetle disturbance in a high elevation whitebark pine ecosystem

USGS Publications Warehouse

Keville, Megan P.; Reed, Sasha C.; Cleveland, Cory C.

2013-01-01

Ecological disturbances can significantly affect biogeochemical cycles in terrestrial ecosystems, but the biogeochemical consequences of the extensive mountain pine beetle outbreak in high elevation whitebark pine (WbP) (Pinus albicaulis) ecosystems of western North America have not been previously investigated. Mountain pine beetle attack has driven widespread WbP mortality, which could drive shifts in both the pools and fluxes of nitrogen (N) within these ecosystems. Because N availability can limit forest regrowth, understanding how beetle-induced mortality affects N cycling in WbP stands may be critical to understanding the trajectory of ecosystem recovery. Thus, we measured above- and belowground N pools and fluxes for trees representing three different times since beetle attack, including unattacked trees. Litterfall N inputs were more than ten times higher under recently attacked trees compared to unattacked trees. Soil inorganic N concentrations also increased following beetle attack, potentially driven by a more than two-fold increase in ammonium (NH4+) concentrations in the surface soil organic horizon. However, there were no significant differences in mineral soil inorganic N or soil microbial biomass N concentrations between attacked and unattacked trees, implying that short-term changes in N cycling in response to the initial stages of WbP attack were restricted to the organic horizon. Our results suggest that while mountain pine beetle attack drives a pulse of N from the canopy to the forest floor, changes in litterfall quality and quantity do not have profound effects on soil biogeochemical cycling, at least in the short-term. However, continuous observation of these important ecosystems will be crucial to determining the long-term biogeochemical effects of mountain pine beetle outbreaks.

The environmental release and fate of antibiotics.

PubMed

Manzetti, Sergio; Ghisi, Rossella

2014-02-15

Antibiotics have been used as medical remedies for over 50 years and have recently emerged as new pollutants in the environment. This review encompasses the fate of several antibiotics in the environment, including sulfonamides, nitrofurans, terfenadines, cephalosporins and cyclosporins. It investigates the cycle of transfer from humans and animals including their metabolic transformation. The results show that antibiotic metabolites are of considerable persistence and are localized to ground-water and drinking water supplies. Furthermore, the results also show that several phases of the cycle of antibiotics in the environment are not well understood, such as how low concentrations of antibiotic metabolites in the diet affect humans and animals. This review also shows that improved wastewater decontamination processes are remediating factors for these emerging pollutants. The results obtained here may help legislators and authorities in understanding the fate and transformation of antibiotics in the environment. Copyright © 2014 Elsevier Ltd. All rights reserved.

Evaporative fractionation of marine water isotopes in the Arctic Ocean help understand a changing Arctic water cycle

NASA Astrophysics Data System (ADS)

Klein, E. S.; Welker, J. M.

2017-12-01

Most of the global hydrologic cycle occurs in oceanic waters. This oceanic derived moisture is critical to the precipitation and evapotranspiration regimes that influence terrestrial Earth systems. Thus understanding oceanic water processes has important global implications for our knowledge of modern and past hydrologic cycles. As they are influenced by environmental variables such as sea surface temperature and atmospheric humidity, water isotope ratios (e.g., δ18O, δ2H) can help understand the patterns driving the water cycle. However, our knowledge of marine isotopes is relatively limited. In particular, the fractionation of water isotopes during evaporation of oceanic water, essentially the start of the hydrologic cycle, is largely based on theoretical relationships derived from spatially and temporally limited data sets. This constrained understanding of oceanic evaporation fractionation patterns is especially pronounced in the rapidly changing Arctic Ocean. These changes are associated with reduced sea ice coverage, which is increasing the amount of local Artic Ocean sourced moisture in atmospheric and terrestrial systems and amplifying the Arctic hydrologic cycle. Here we present new data revealing the nuances of evaporative fractionation of Arctic Ocean water isotopes with the first collection of continuous, contemporaneous sea water and vapor isotopes. These data, collected in situ aboard the icebreaker Healy, show that the difference between actual ocean vapor isotope values and vapor values estimated by the closure equation increases progressively with latitude (especially beyond 70°) and varies between δ18O and δ2H. These differences are likely due to more isotopic mixing in the troposphere and/or closure equation assumptions inapplicable to Arctic regions. Moreover, we find: 1) a positive relationship between fractionation magnitude and latitude; and 2) the influence of evaporative fractionation from environmental variables such as wind and relative humidity reverses with the presence of sea ice. These new data increase our understanding of the patterns and processes governing past, present, and future changes to the Arctic hydrologic cycle.

Optimizing the Multisectoral Nutrition Policy Cycle: A Systems Perspective.

PubMed

Lamstein, Sascha; Pomeroy-Stevens, Amanda; Webb, Patrick; Kennedy, Eileen

2016-12-01

Based on the data collected in Uganda, Nepal, and Ethiopia, the papers included in this supplement fill a critical gap in evidence regarding multisectoral National Nutrition Action Plans. The studies offer new data and new thinking on how and why governance, effective financial decentralization, and improved accountability all matter for nutrition actions in low-income countries. This introductory paper offers an overview of the current state of evidence and thinking on the multisectoral nutrition policy cycle, including how governance and financing support that process. It also explores the benefits of applying a systems lens to understand the dynamic, enabling processes of the policy cycle-from research to knowledge and ultimately action-and to provide more dynamic and accurate information for nutrition advocacy and evidence-based decision-making. It concludes with key findings from the 5 country-level studies included. Several important themes emerge: the egregious gap in human resources needed for effective nutrition actions in most low-income settings, the value of research on bottlenecks and successes, and the need for routine monitoring of national policies and plans to measure their effectiveness in achieving both their own stated goals and global sustainable development goals. Reviewing these studies together provides a path forward in building stronger, evidence-based multisectoral nutrition policies and supporting implementation of the nutrition activities included within them. © The Author(s) 2016.

Using Data Assimilation Methods of Prediction of Solar Activity

NASA Technical Reports Server (NTRS)

Kitiashvili, Irina N.; Collins, Nancy S.

2017-01-01

The variable solar magnetic activity known as the 11-year solar cycle has the longest history of solar observations. These cycles dramatically affect conditions in the heliosphere and the Earth's space environment. Our current understanding of the physical processes that make up global solar dynamics and the dynamo that generates the magnetic fields is sketchy, resulting in unrealistic descriptions in theoretical and numerical models of the solar cycles. The absence of long-term observations of solar interior dynamics and photospheric magnetic fields hinders development of accurate dynamo models and their calibration. In such situations, mathematical data assimilation methods provide an optimal approach for combining the available observational data and their uncertainties with theoretical models in order to estimate the state of the solar dynamo and predict future cycles. In this presentation, we will discuss the implementation and performance of an Ensemble Kalman Filter data assimilation method based on the Parker migratory dynamo model, complemented by the equation of magnetic helicity conservation and long-term sunspot data series. This approach has allowed us to reproduce the general properties of solar cycles and has already demonstrated a good predictive capability for the current cycle, 24. We will discuss further development of this approach, which includes a more sophisticated dynamo model, synoptic magnetogram data, and employs the DART Data Assimilation Research Testbed.

Recommendations for Cycle II of National Water-Quality Assessment (NAWQA) Program

USGS Publications Warehouse

,; Mallard, Gail E.; Armbruster, Jeffrey T.; Broshears, Robert E.; Evenson, Eric J.; Luoma, Samuel N.; Phillips, Patrick J.; Prince, Keith R.

1999-01-01

The Planning Team for the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program defines a successful NAWQA Program as one that makes a balanced contribution to study-unit issues, national issues, and to the pursuit of scientific knowledge. Using this criterion, NAWQA has been a success. The program has provided important new knowledge and understanding of scientific processes, and insights into the occurrence and distribution of contaminants that have been key to local and national policy decisions. Most of the basic design characteristics of NAWQA's first decade (1991-2000), hereafter called cycle I) remain appropriate as the program enters its second decade (cycle II) in 2001. In cycle II, the program has the opportunity to build on its successful base and to evolve to take advantage of the knowledge generated in cycle I. In addition to this expected evolution, NAWQA must also make some changes to compensate for the fact that program funding has not kept pace with inflation. An important theme for the second cycle of NAWQA will be the integration of knowledge across scales and across disciplines. The question that drove the NAWQA design in the first cycle was "How is water quality related to land use?" Cycle II will build upon what was learned in cycle I and use land-use and water-quality gradients to identify and understand potential sources of various constituents and the processes affecting transport and fate of those constituents and their effects on receptors. The understanding we gain from applying this approach will be relevant to the interests of policymakers, regulatory agencies, and resource managers.

A direct estimate of evapotranspiration over the Amazon basin and implications for our understanding of carbon and water cycling

NASA Astrophysics Data System (ADS)

Swann, A. L. S.; Koven, C.; Lombardozzi, D.; Bonan, G. B.

2017-12-01

Evapotranspiration (ET) is a critical term in the surface energy budget as well as the water cycle. There are few direct measurements of ET, and thus the magnitude and variability is poorly constrained at large spatial scales. Estimates of the annual cycle of ET over the Amazon are critical because they influence predictions of the seasonal cycle of carbon fluxes, as well as atmospheric dynamics and circulation. We estimate ET for the Amazon basin using a water budget approach, by differencing rainfall, discharge, and time-varying storage from the Gravity Recovery and Climate Experiment. We find that the climatological annual cycle of ET over the Amazon basin upstream of Óbidos shows suppression of ET during the wet season, and higher ET during the dry season, consistent with flux tower based observations in seasonally dry forests. We also find a statistically significant decrease in ET over the time period 2002-2015 of -1.46 mm/yr. Our direct estimate of the seasonal cycle of ET is largely consistent with previous indirect estimates, including energy budget based approaches, an up-scaled station based estimate, and land surface model estimates, but suggests that suppression of ET during the wet season is underestimated by existing products. We further quantify possible contributors to the phasing of the seasonal cycle and downward time trend using land surface models.

Nanoscale morphological and chemical changes of high voltage lithium-manganese rich NMC composite cathodes with cycling.

PubMed

Yang, Feifei; Liu, Yijin; Martha, Surendra K; Wu, Ziyu; Andrews, Joy C; Ice, Gene E; Pianetta, Piero; Nanda, Jagjit

2014-08-13

Understanding the evolution of chemical composition and morphology of battery materials during electrochemical cycling is fundamental to extending battery cycle life and ensuring safety. This is particularly true for the much debated high energy density (high voltage) lithium-manganese rich cathode material of composition Li(1 + x)M(1 - x)O2 (M = Mn, Co, Ni). In this study we combine full-field transmission X-ray microscopy (TXM) with X-ray absorption near edge structure (XANES) to spatially resolve changes in chemical phase, oxidation state, and morphology within a high voltage cathode having nominal composition Li1.2Mn0.525Ni0.175Co0.1O2. Nanoscale microscopy with chemical/elemental sensitivity provides direct quantitative visualization of the cathode, and insights into failure. Single-pixel (∼ 30 nm) TXM XANES revealed changes in Mn chemistry with cycling, possibly to a spinel conformation and likely including some Mn(II), starting at the particle surface and proceeding inward. Morphological analysis of the particles revealed, with high resolution and statistical sampling, that the majority of particles adopted nonspherical shapes after 200 cycles. Multiple-energy tomography showed a more homogeneous association of transition metals in the pristine particle, which segregate significantly with cycling. Depletion of transition metals at the cathode surface occurs after just one cycle, likely driven by electrochemical reactions at the surface.

Nanoscale Morphological and Chemical Changes of High Voltage Lithium–Manganese Rich NMC Composite Cathodes with Cycling

PubMed Central

2015-01-01

Understanding the evolution of chemical composition and morphology of battery materials during electrochemical cycling is fundamental to extending battery cycle life and ensuring safety. This is particularly true for the much debated high energy density (high voltage) lithium–manganese rich cathode material of composition Li1 + xM1 – xO2 (M = Mn, Co, Ni). In this study we combine full-field transmission X-ray microscopy (TXM) with X-ray absorption near edge structure (XANES) to spatially resolve changes in chemical phase, oxidation state, and morphology within a high voltage cathode having nominal composition Li1.2Mn0.525Ni0.175Co0.1O2. Nanoscale microscopy with chemical/elemental sensitivity provides direct quantitative visualization of the cathode, and insights into failure. Single-pixel (∼30 nm) TXM XANES revealed changes in Mn chemistry with cycling, possibly to a spinel conformation and likely including some Mn(II), starting at the particle surface and proceeding inward. Morphological analysis of the particles revealed, with high resolution and statistical sampling, that the majority of particles adopted nonspherical shapes after 200 cycles. Multiple-energy tomography showed a more homogeneous association of transition metals in the pristine particle, which segregate significantly with cycling. Depletion of transition metals at the cathode surface occurs after just one cycle, likely driven by electrochemical reactions at the surface. PMID:25054780

"Constructing" the Cell Cycle in 3D

ERIC Educational Resources Information Center

Koc, Isil; Turan, Merve

2012-01-01

The cycle of duplication and division, known as the "cell cycle," is the essential mechanism by which all living organisms reproduce. This activity allows students to develop an understanding of the main events that occur during the typical eukaryotic cell cycle mostly in the process of mitotic phase that divides the duplicated genetic material…

Integrating Concept Mapping and the Learning Cycle To Teach Diffusion and Osmosis Concepts to High School Biology Students.

ERIC Educational Resources Information Center

Odom, Arthur L.; Kelly, Paul V.

2001-01-01

Explores the effectiveness of concept mapping, the learning cycle, expository instruction, and a combination of concept mapping/learning cycle in promoting conceptual understanding of diffusion and osmosis. Concludes that the concept mapping/learning cycle and concept mapping treatment groups significantly outperformed the expository treatment…

The History and Impact of the CNO Cycles in Nuclear Astrophysics

NASA Astrophysics Data System (ADS)

Wiescher, Michael

2018-03-01

The carbon cycle, or Bethe-Weizsäcker cycle, plays an important role in astrophysics as one of the most important energy sources for quiescent and explosive hydrogen burning in stars. This paper presents the intellectual and historical background of the idea of the correlation between stellar energy production and the synthesis of the chemical elements in stars on the example of this cycle. In particular, it addresses the contributions of Carl Friedrich von Weizsäcker and Hans Bethe, who provided the first predictions of the carbon cycle. Further, the experimental verification of the predicted process as it developed over the following decades is discussed, as well as the extension of the initial carbon cycle to the carbon-nitrogen-oxygen (CNO) multi-cycles and the hot CNO cycles. This development emerged from the detailed experimental studies of the associated nuclear reactions over more than seven decades. Finally, the impact of the experimental and theoretical results on our present understanding of hydrogen burning in different stellar environments is presented, as well as the impact on our understanding of the chemical evolution of our universe.

Climate Change, Soils, and Human Health

NASA Astrophysics Data System (ADS)

Brevik, Eric C.

2013-04-01

According to the Intergovernmental Panel on Climate Change, global temperatures are expected to increase 1.1 to 6.4 degrees C during the 21st century and precipitation patterns will be altered by climate change (IPCC, 2007). Soils are intricately linked to the atmospheric/climate system through the carbon, nitrogen, and hydrologic cycles. Altered climate will, therefore, have an effect on soil processes and properties. Studies into the effects of climate change on soil processes and properties are still incomplete, but have revealed that climate change will impact soil organic matter dynamics including soil organisms and the multiple soil properties that are tied to organic matter, soil water, and soil erosion. The exact direction and magnitude of those impacts will be dependent on the amount of change in atmospheric gases, temperature, and precipitation amounts and patterns. Recent studies give reason to believe at least some soils may become net sources of atmospheric carbon as temperatures rise; this is particularly true of high latitude regions with permanently frozen soils. Soil erosion by both wind and water is also likely to increase. These soil changes will lead to both direct and indirect impacts on human health. Possible indirect impacts include temperature extremes, food safety and air quality issues, increased and/or expanded disease incidences, and occupational health issues. Potential direct impacts include decreased food security and increased atmospheric dust levels. However, there are still many things we need to know more about. How climate change will affect the nitrogen cycle and, in turn, how the nitrogen cycle will affect carbon sequestration in soils is a major research need, as is a better understanding of soil water-CO2 level-temperature relationships. Knowledge of the response of plants to elevated atmospheric CO2 given limitations in nutrients like nitrogen and phosphorus and how that affects soil organic matter dynamics is a critical need. There is also a great need for a better understanding of how soil organisms will respond to climate change because those organisms are incredibly important in a number of soil processes, including the carbon and nitrogen cycles. All of these questions are important in trying to understand human health impacts. More information on climate change, soils, and human health issues can be found in Brevik (2012). References Brevik, E.C. 2012. Climate change, soils, and human health. In: E.C. Brevik and L. Burgess (Eds). Soils and human health. CRC Press, Boca Raton, FL. in press. IPCC. 2007. Summary for policymakers. pp. 1-18. In S. Solomon, D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M.Tignor and H.L. Miller (eds). Climate change 2007: the physical science basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, UK.

SEP Time-to-Maximum (TTM) Studies and the Ionic Charge States of Solar Heavy Ions

NASA Technical Reports Server (NTRS)

Tylka, Allan J.; Dietrich, William F.

2004-01-01

1. We published a report on the TTM method and presented the results at the 28 International Cosmic Ray Conference. Included in this paper were our results on the energy-dependent charge state of Fe in the 200 1 April 15 ground- level event, the largest of Cycle 23. We showed that our results agreed well with direct measurements from SAMPEX in this event. We also presented results for the 2001 April 14 event, one of the largest impulsive events of Cycle 23. 2. We extracted TTM values for protons and ions of various energies in approx. 50 SEP events in Cycle 23, using time profiles measured by ACE, Wind, GOES, IMPS, SOHO, and SAMPEX. This event sample included many large gradual events, as well as several impulsive events. The TTM analyses typically yielded approx. 300 datapoints per event. 3. We used these data to make preliminary event classifications according to: (a) shapes of the rigidity and/or speed dependence of TTMs in each event; (b) behavior of proton TTMs compared to that of heavier ions; and (c) the behavior of Fe TTMs compared to that of lighter Z greater than I ions. 4. We cross-checked proton fluence and TTM values from 8 instruments on 6 satellites, so as to understand the origin of systematic instrument-to-instrument discrepancies. By also comparing the observed proton spectra, it was possible to extract correction factors to the nominal proton energy bins that removed or greatly reduced the instrument-to-instrument spread among proton TTMs. 5. We began comparisons of proton and He-4 TTM values in some particularly well measured, large SEP events measured by IMP8 in Cycles 21 and 22 when the instruments onboard were functioning better. It is hoped that these data will provide a better understanding of event-to-event variation in the functional dependence of TTMs on velocity and rigidity.

Transcriptome-wide analysis of the Trypanosoma cruzi proliferative cycle identifies the periodically expressed mRNAs and their multiple levels of control

PubMed Central

Chávez, Santiago; Eastman, Guillermo; Smircich, Pablo; Becco, Lorena Lourdes; Oliveira-Rizzo, Carolina; Fort, Rafael; Potenza, Mariana; Garat, Beatriz; Sotelo-Silveira, José Roberto

2017-01-01

Trypanosoma cruzi is the protozoan parasite causing American trypanosomiasis or Chagas disease, a neglected parasitosis with important human health impact in Latin America. The efficacy of current therapy is limited, and its toxicity is high. Since parasite proliferation is a fundamental target for rational drug design, we sought to progress into its understanding by applying a genome-wide approach. Treating a TcI linage strain with hydroxyurea, we isolated epimastigotes in late G1, S and G2/M cell cycle stages at 70% purity. The sequencing of each phase identified 305 stage-specific transcripts (1.5-fold change, p≤0.01), coding for conserved cell cycle regulated proteins and numerous proteins whose cell cycle dependence has not been recognized before. Comparisons with the parasite T. brucei and the human host reveal important differences. The meta-analysis of T. cruzi transcriptomic and ribonomic data indicates that cell cycle regulated mRNAs are subject to sub-cellular compartmentalization. Compositional and structural biases of these genes- including CAI, GC content, UTR length, and polycistron position- may contribute to their regulation. To discover nucleotide motifs responsible for the co-regulation of cell cycle regulated genes, we looked for overrepresented motifs at their UTRs and found a variant of the cell cycle sequence motif at the 3' UTR of most of the S and G2 stage genes. We additionally identified hairpin structures at the 5' UTRs of a high proportion of the transcripts, suggesting that periodic gene expression might also rely on translation initiation in T. cruzi. In summary, we report a comprehensive list of T. cruzi cell cycle regulated genes, including many previously unstudied proteins, we show evidence favoring a multi-step control of their expression, and we identify mRNA motifs that may mediate their regulation. Our results provide novel information of the T. cruzi proliferative proteins and the integrated levels of their gene expression control. PMID:29182646

Water Literacy in College Freshmen: Could a Cognitive Imagery Strategy Improve Understanding?

ERIC Educational Resources Information Center

Ewing, Margaret S.; Mills, Terence J.

1994-01-01

Presents a study designed to determine whether levels of water literacy differed between (n=83) college freshman nonscience majors having one versus two years of high school science coursework, visual imagery exercises could improve understanding of the water cycle, and patterns exist in the concept of the water cycle. (Contains 23 references.)…

Investigators share improved understanding of the North American carbon cycle

Treesearch

Richard A. Birdsey; Robert Cook; Scott Denning; Peter Griffith; Beverly Law; Jeffrey Masek; Anna Michalak; Stephen Ogle; Dennis Ojima; Yude Pan; Christopher Sabine; Edwin Sheffner; Eric Sundquist

2007-01-01

The U.S. North American Carbon Program (NACP) sponsored an "all-scientist" meeting to review progress in understanding the dynamics of the carbon cycle of North American and adjacent oceans, and to chart a course for improved integration across scientifi c disciplines, scales, and Earth system boundaries. The meeting participants also addressed the need for...

Scientific Models Help Students Understand the Water Cycle

ERIC Educational Resources Information Center

Forbes, Cory; Vo, Tina; Zangori, Laura; Schwarz, Christina

2015-01-01

The water cycle is a large, complex system that encompasses ideas across the K-12 science curriculum. By the time students leave fifth grade, they should understand "that a system is a group of related parts that make up a whole and can carry out functions its individual parts cannot" and be able to describe both components and processes…

Engagement, Exploration, Explanation, Extension, and Evaluation (5E) Learning Cycle and Conceptual Change Text as Learning Tools

ERIC Educational Resources Information Center

Balci, Sibel; Cakiroglu, Jale; Tekkaya, Ceren

2006-01-01

The purpose of this study is to investigate the effects of the Engagement, Exploration, Explanation, Extension, and Evaluation (5E) learning cycle, conceptual change texts, and traditional instructions on 8th grade students' understanding of photosynthesis and respiration in plants. Students' understanding of photosynthesis and respiration in…

Understanding the Magic of the Bicycle; Basic scientific explanations to the two-wheeler's mysterious and fascinating behavior

NASA Astrophysics Data System (ADS)

Connolly, Joseph W.

The bicycle is a common, yet unique mechanical contraption in our world. In spite of this, the bike's physical and mechanical principles are understood by a select few. You do not have to be a genius to join this small group of people who understand the physics of cycling. This is your guide to fundamental principles (such as Newton's laws) and the book provides intuitive, basic explanations for the bicycle's behaviour. Each concept is introduced and illustrated with simple, everyday examples. Although cycling is viewed by most as a fun activity, and almost everyone acquires the basic skills at a young age, few understand the laws of nature that give magic to the ride. This is a closer look at some of these fun, exhilarating, and magical aspects of cycling. In the reading, you will also understand other physical principles such as motion, force, energy, power, heat, and temperature.

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows.

PubMed

Kommadath, Arun; Woelders, Henri; Beerda, Bonne; Mulder, Herman A; de Wit, Agnes A C; Veerkamp, Roel F; te Pas, Marinus F W; Smits, Mari A

2011-04-19

The decline noticed in several fertility traits of dairy cattle over the past few decades is of major concern. Understanding of the genomic factors underlying fertility, which could have potential applications to improve fertility, is very limited. Here, we aimed to identify and study those genes that associated with a key fertility trait namely estrous behavior, among genes expressed in four bovine brain areas (hippocampus, amygdala, dorsal hypothalamus and ventral hypothalamus), either at the start of estrous cycle, or at mid cycle, or regardless of the phase of cycle. An average heat score was calculated for each of 28 primiparous cows in which estrous behavior was recorded for at least two consecutive estrous cycles starting from 30 days post-partum. Gene expression was then measured in brain tissue samples collected from these cows, 14 of which were sacrificed at the start of estrus and 14 around mid cycle. For each brain area, gene expression was modeled as a function of the orthogonally transformed average heat score values using a Bayesian hierarchical mixed model. Genes whose expression patterns showed significant linear or quadratic relationships with heat scores were identified. These included genes expected to be related to estrous behavior as they influence states like socio-sexual behavior, anxiety, stress and feeding motivation (OXT, AVP, POMC, MCHR1), but also genes whose association with estrous behavior is novel and warrants further investigation. Several genes were identified whose expression levels in the bovine brain associated with the level of expression of estrous behavior. The genes OXT and AVP play major roles in regulating estrous behavior in dairy cows. Genes related to neurotransmission and neuronal plasticity are also involved in estrous regulation, with several genes and processes expressed in mid-cycle probably contributing to proper expression of estrous behavior in the next estrus. Studying these genes and the processes they control improves our understanding of the genomic regulation of estrous behavior expression.

Life histories of microalgal species causing harmful blooms: Haploids, diploids and the relevance of benthic stages.

PubMed

Figueroa, Rosa Isabel; Estrada, Marta; Garcés, Esther

2018-03-01

In coastal and offshore waters, Harmful Algal Blooms (HABs) currently threaten the well-being of coastal countries. These events, which can be localized or involve wide-ranging areas, pose risks to human health, marine ecosystems, and economic resources, such as tourism, fisheries, and aquaculture. Dynamics of HABs vary from one site to another, depending on the hydrographic and ecological conditions. The challenge in investigating HABs is that they are caused by organisms from multiple algal classes, each with its own unique features, including different life histories. The complete algal life cycle has been determined in <1% of the described species, although elucidation of the life cycles of bloom-forming species is essential in developing preventative measures. The knowledge obtained thus far has confirmed the complexity of the algal life cycle, which is composed of discrete life stages whose morphology, ecological niche (plankton/benthos), function, and lifespan vary. The factors that trigger transitions between the different stages in nature are mostly unknown, but it is clear that an understanding of this process provides the key to effectively forecasting bloom recurrence, maintenance, and decline. Planktonic stages constitute an ephemeral phase of the life cycle of most species whereas resistant, benthic stages enable a species to withstand adverse conditions for prolonged periods, thus providing dormant reservoirs for eventual blooms and facilitating organismal dispersal. Here we review current knowledge of the life cycle strategies of major groups of HAB producers in marine and brackish waters. Rather than providing a comprehensive discussion, the objective was to highlight several of the research milestones that have changed our understanding of the plasticity and frequency of the different life cycle stages as well as the transitions between them. We also discuss the relevance of benthic and planktonic forms and their implications for HAB dynamics. Copyright © 2018. Published by Elsevier B.V.

Linking Metabolism, Elemental Cycles, and Environmental Conditions in the Deep Biosphere: Growth of a Model Extremophile, Archaeoglobus fulgidus, Under High-Pressure Conditions

NASA Astrophysics Data System (ADS)

Oliver, G. C. M.; Cario, A.; Rogers, K. L.

2015-12-01

A majority of Earth's biosphere is hosted in subsurface environments where global-scale biogeochemical and energy cycles are driven by diverse microbial communities that operate on and are influenced by micro-scale environmental variables. While the subsurface hosts a variety of geochemical and geothermal conditions, elevated pressures are common to all subsurface ecosystems. Understanding how microbes adapt to and thrive in high-pressure environments is essential to linking microbial subsurface processes with global-scale cycles. Here we are using a model extremophile, Archaeoglobus fulgidus, to determine how elevated pressures affect the growth, metabolism, and physiology of subsurface microorganisms. A. fulgidus cycles carbon and sulfur via heterotrophic and autotrophic sulfate reduction in various high temperature and high-pressure niches including shallow marine vents, deep-sea hydrothermal vents, and deep oil reservoirs. Here we report the results of A. fulgidus growth experiments at optimum temperature, 83°C, and pressures up to 600 bars. Exponential growth was observed over the entire pressure range, though growth rates were diminished at 500 and 600 bars compared to ambient pressure experimental controls. At pressures up to 400 bars, cell density yields and growth rates were at least as high as ambient pressure controls. Elevated pressures and extended incubation times stimulated cell flocculation, a common stress response in this strain, and cellular morphology was affected at pressures exceeding 400 bars. These results suggest that A. fulgidus continues carbon, sulfur and energy cycling unaffected by elevated pressures up to 400 bars, representing a variety of subsurface environments. The ability of subsurface organisms to drive biogeochemical cycles at elevated pressures is a critical link between the surface and subsurface biospheres and understanding how species-scale processes operate under these conditions is a vital part of global-scale biogeochemical models.

High Cycle Fatigue Science and Technology Program 1999 Annual Report

DTIC Science & Technology

2000-01-01

CONFINING MEDIUM) FOCUSED LASER BEAM PAINT (ABLATION MEDIUM) TRAVELING SHOCK WAVES • A repetitive pattern of laser pulses results in an area of deep ...includes an improved beam delivery system, a more 11 robust beam monitoring configuration, and a more robust processing chamber. Lessons learned will be...impacted specimens. Additional work is needed to better understand the effect of this parameter and technique. Fractography showed that some of the

The Sun as a star

NASA Technical Reports Server (NTRS)

Jordan, S. D. (Editor)

1981-01-01

Solar physics was reviewed in the context of the solar atmoshere. The understanding of the solar atmosphere is linked to stellar atmospheric research. Topics covered include: the existence of the chromosphere, the corona, and the solar wind; the interactive complex of convection, differential rotation, magnetic field generation and concentration, and the activity cycle; phenomena such as granulation, supergranulation, the 5 minute oscillation, filigree, faculae, sunspots, spicules, prominences, surges, and the spectacular flares.

Model-Based Analysis of Cell Cycle Responses to Dynamically Changing Environments

PubMed Central

Seaton, Daniel D; Krishnan, J

2016-01-01

Cell cycle progression is carefully coordinated with a cell’s intra- and extracellular environment. While some pathways have been identified that communicate information from the environment to the cell cycle, a systematic understanding of how this information is dynamically processed is lacking. We address this by performing dynamic sensitivity analysis of three mathematical models of the cell cycle in Saccharomyces cerevisiae. We demonstrate that these models make broadly consistent qualitative predictions about cell cycle progression under dynamically changing conditions. For example, it is shown that the models predict anticorrelated changes in cell size and cell cycle duration under different environments independently of the growth rate. This prediction is validated by comparison to available literature data. Other consistent patterns emerge, such as widespread nonmonotonic changes in cell size down generations in response to parameter changes. We extend our analysis by investigating glucose signalling to the cell cycle, showing that known regulation of Cln3 translation and Cln1,2 transcription by glucose is sufficient to explain the experimentally observed changes in cell cycle dynamics at different glucose concentrations. Together, these results provide a framework for understanding the complex responses the cell cycle is capable of producing in response to dynamic environments. PMID:26741131

Ambulation During Periods of Supersaturation Increase Decompression Stress in Spacewalk Simulations

NASA Technical Reports Server (NTRS)

Pollock, N. W.; Natoli, M. J.; Martina, S. D.; Conkin, J.; Wessel, J. H., III; Gernhardt, M. L.

2016-01-01

Musculoskeletal activity accelerates inert gas elimination during oxygen breathing prior to decompression (prebreathe), but may also promote bubble formation (nucleation) and increase the risk of decompression sickness (DCS). The timing, pattern and intensity of musculoskeletal activity and the level of tissue supersaturation are likely critical to the net effect. Understanding the relationships is important to evaluate exercise prebreathe protocols and quantify decompression risk in gravity and microgravity environments. The NASA Prebreathe Reduction Program (PRP) combined oxygen prebreathe and exercise preceding a low pressure (4.3 psia; altitude equivalent of 30,300 ft [9,235 m]) simulation exposure of non-ambulatory subjects (a microgravity analog) to produce two protocols now used by astronauts preparing for extravehicular activity. One protocol included both upright cycling and non-cycling exercise (CEVIS: 'cycle ergometer vibration isolation system') and one protocol relied on non-cycling exercise only (ISLE: 'in-suit light exercise'). CEVIS trial data serve as control data for the current study to investigate the influence of ambulation exercise in 1G environments on bubble formation and the subsequent risk of DCS.

The use of advanced mass spectrometry to dissect the life-cycle of photosystem II

DOE PAGES

Weisz, Daniel A.; Gross, Michael L.; Pakrasi, Himadri B.

2016-05-10

Photosystem II (PSII) is a photosynthetic membrane-protein complex that undergoes an intricate, tightly regulated cycle of assembly, damage, and repair. The available crystal structures of cyanobacterial PSII are an essential foundation for understanding PSII function, but nonetheless provide a snapshot only of the active complex. To study aspects of the entire PSII life-cycle, mass spectrometry (MS) has emerged as a powerful tool that can be used in conjunction with biochemical techniques. In this article, we present the MS-based approaches that are used to study PSII composition, dynamics, and structure, and review the information about the PSII life-cycle that has beenmore » gained by these methods. This information includes the composition of PSII subcomplexes, discovery of accessory PSII proteins, identification of post-translational modifications and quantification of their changes under various conditions, determination of the binding site of proteins not observed in PSII crystal structures, conformational changes that underlie PSII functions, and identification of water and oxygen channels within PSII. Lastly, we conclude with an outlook for the opportunity of future MS contributions to PSII research.« less

Geoeffectiveness during the early phase of Solar Cycle 24

NASA Astrophysics Data System (ADS)

Pande, Bimal

Geoeffectiveness during the early phase of Solar Cycle 24 \\underline{} Abstract\\underline{} It is very important and interesting to understand the solar eruptions because it produces the geoeffectiveness in our Earth environment. In the rise phase of the solar cycle, geoeffective events are less frequent, thus this provide us better opportunity to study these events including the detection of their source regions. Keeping this in mind, we have analysed the data of rise phase of current solar cycle 24 ( 2009-2012). During above time period, we have selected 59 geoeffective events having Disturbance Storm Time (Dst) index < -50 nT. Based on the Dst index, we divided the events into two categories i.e. moderate (< -50 nT > -100 nT ) and intense ( <-100 nT). To locate the solar source regions of geoeffective and SEPs associated events, we have used available images, movies and Solar Geophysical data (SGD) list: for example movies from SOHO/EIT, images and movies from the Solar Dynamic Observatory (SDO). In this study, we will discuss and compare the different properties of associated CMEs, flares and their relation with geoeffectiveness.

Modeling Menstrual Cycle Length and Variability at the Approach of Menopause Using Hierarchical Change Point Models

PubMed Central

Huang, Xiaobi; Elliott, Michael R.; Harlow, Siobán D.

2013-01-01

SUMMARY As women approach menopause, the patterns of their menstrual cycle lengths change. To study these changes, we need to jointly model both the mean and variability of cycle length. Our proposed model incorporates separate mean and variance change points for each woman and a hierarchical model to link them together, along with regression components to include predictors of menopausal onset such as age at menarche and parity. Additional complexity arises from the fact that the calendar data have substantial missingness due to hormone use, surgery, and failure to report. We integrate multiple imputation and time-to event modeling in a Bayesian estimation framework to deal with different forms of the missingness. Posterior predictive model checks are applied to evaluate the model fit. Our method successfully models patterns of women’s menstrual cycle trajectories throughout their late reproductive life and identifies change points for mean and variability of segment length, providing insight into the menopausal process. More generally, our model points the way toward increasing use of joint mean-variance models to predict health outcomes and better understand disease processes. PMID:24729638

Numerical Investigation Into Effect of Fuel Injection Timing on CAI/HCCI Combustion in a Four-Stroke GDI Engine

NASA Astrophysics Data System (ADS)

Cao, Li; Zhao, Hua; Jiang, Xi; Kalian, Navin

2006-02-01

The Controlled Auto-Ignition (CAI) combustion, also known as Homogeneous Charge Compression Ignition (HCCI), was achieved by trapping residuals with early exhaust valve closure in conjunction with direct injection. Multi-cycle 3D engine simulations have been carried out for parametric study on four different injection timings in order to better understand the effects of injection timings on in-cylinder mixing and CAI combustion. The full engine cycle simulation including complete gas exchange and combustion processes was carried out over several cycles in order to obtain the stable cycle for analysis. The combustion models used in the present study are the Shell auto-ignition model and the characteristic-time combustion model, which were modified to take the high level of EGR into consideration. A liquid sheet breakup spray model was used for the droplet breakup processes. The analyses show that the injection timing plays an important role in affecting the in-cylinder air/fuel mixing and mixture temperature, which in turn affects the CAI combustion and engine performance.

In situ analysis of capacity fade in thin-film anodes for high performance Li-ion all-solid-state batteries

NASA Astrophysics Data System (ADS)

Leite, Marina S.; Gong, Chen; Ruzmetov, Dmitry; Talin, A. Alec

There is still a pressing need to understand how the solid-interfaces in Li-ion all-solid-batteries form, including their chemical composition and electrical characteristics. In order to resolve the origin of the degradation mechanism in Al anodes, we combine in situ scanning electron microscopy in ultra-high vacuum with electrochemical cycling, in addition to ex situ characterization of the morphological, chemical, and electrical changes of the Al anodes upon lithiation. An AlLi alloy capped by a stable Al-Li-O is formed on the top surface of the anode, trapping Li, which results in the capacity fade, from 48.0 to 41.5 μ.Ah/cm2 in two cycles. The addition of a Cu capping layer is insufficient to prevent the device degradation because of the fast Li diffusion within Al. Yet, Si present extremely stable cycling: >92% of capacity retention after 100 cycles, with average Coulombic efficiency of 98%. Our in situ measurements represent a new platform for probing the real-time degradation of electrodes in all-solid-state batteries for energy storage devices.

Life Cycle of Tropical Convection and Anvil in Observations and Models

NASA Astrophysics Data System (ADS)

McFarlane, S. A.; Hagos, S. M.; Comstock, J. M.

2011-12-01

Tropical convective clouds are important elements of the hydrological cycle and produce extensive cirrus anvils that strongly affect the tropical radiative energy balance. To improve simulations of the global water and energy cycles and accurately predict both precipitation and cloud radiative feedbacks, models need to realistically simulate the lifecycle of tropical convection, including the formation and radiative properties of ice anvil clouds. By combining remote sensing datasets from precipitation and cloud radars at the Atmospheric Radiation Measurement (ARM) Darwin site with geostationary satellite data, we can develop observational understanding of the lifetime of convective systems and the links between the properties of convective systems and their associated anvil clouds. The relationships between convection and anvil in model simulations can then be compared to those seen in the observations to identify areas for improvement in the model simulations. We identify and track tropical convective systems in the Tropical Western Pacific using geostationary satellite observations. We present statistics of the tropical convective systems including size, age, and intensity and classify the lifecycle stage of each system as developing, mature, or dissipating. For systems that cross over the ARM Darwin site, information on convective intensity and anvil properties are obtained from the C-Pol precipitation radar and MMCR cloud radar, respectively, and are examined as a function of the system lifecycle. Initial results from applying the convective identification and tracking algorithm to a tropical simulation from the Weather Research and Forecasting (WRF) model run show that the model produces reasonable overall statistics of convective systems, but details of the life cycle (such as diurnal cycle, system tracks) differ from the observations. Further work will focus on the role of atmospheric temperature and moisture profiles in the model's convective life cycle.

Advances In Understanding Global Water Cycle With Advent of GPM Mission

NASA Technical Reports Server (NTRS)

Smith, Eric A.

2002-01-01

During the coming decade, the internationally organized Global Precipitation Measurement (GPM) Mission will take an important step in creating a global precipitation observing system from space based on an international fleet of satellites operated as a constellation. One perspective for understanding the nature of GPM is that it will be a hierarchical system of datastreams beginning with very high caliber combined dual frequency radar/passive microwave (PMW) rain-radiometer retrievals, to high caliber PMW rain-radiometer only retrievals, and then on to blends of the former datastreams with additional lower-caliber PMW-based and IR-based rain retrievals. Within the context of the now emerging global water & energy cycle (GWEC) programs of a number of research agencies throughout the world, GPM serves as a centerpiece space mission for improving our understanding of the Earth's water cycle from a global measurement perspective and on down to regional scales and below. One of the salient problems within our current understanding of the global water and energy cycle is determining whether a change in the rate of the water cycle is accompanying changes in climate, e.g., climate warming. As there are a number of ways in which to define a rate-change of the global water cycle, it is not entirely clear as to what constitutes such a determination. This paper first presents an overview of the GPM Mission and how its overriding scientific objectives for climate, weather, and hydrology flow from the anticipated improvements that are being planned for the constellation-based measuring system. Next, the paper shows how the GPM observations can be used within the framework of the oceanic and continental water budget equations to determine whether a given perturbation in precipitation is indicative of an actual rate change in the water cycle, consistent with required responses in water storage and/or water flux transport processes, or whether it is simply part of the natural variability of a fixed rate cycle.

Assessing heterogeneity in soil nitrogen cycling: a plot-scale approach

Treesearch

Peter Baas; Jacqueline E. Mohan; David Markewitz; Jennifer D. Knoepp

2014-01-01

The high level of spatial and temporal heterogeneity in soil N cycling processes hinders our ability to develop an ecosystem-wide understanding of this cycle. This study examined how incorporating an intensive assessment of spatial variability for soil moisture, C, nutrients, and soil texture can better explain ecosystem N cycling at the plot scale. Five sites...

Comparison of Battery Life Across Real-World Automotive Drive-Cycles (Presentation)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, K.; Earleywine, M.; Wood, E.

2011-11-01

Laboratories run around-the-clock aging tests to try to understand as quickly as possible how long new Li-ion battery designs will last under certain duty cycles. These tests may include factors such as duty cycles, climate, battery power profiles, and battery stress statistics. Such tests are generally accelerated and do not consider possible dwell time at high temperatures and states-of-charge. Battery life-predictive models provide guidance as to how long Li-ion batteries may last under real-world electric-drive vehicle applications. Worst-case aging scenarios are extracted from hundreds of real-world duty cycles developed from vehicle travel surveys. Vehicles examined included PHEV10 and PHEV40 EDVsmore » under fixed (28 degrees C), limited cooling (forced ambient temperature), and aggressive cooling (20 degrees C chilled liquid) scenarios using either nightly charging or opportunity charging. The results show that battery life expectancy is 7.8 - 13.2 years for the PHEV10 using a nightly charge in Phoenix, AZ (hot climate), and that the 'aggressive' cooling scenario can extend battery life by 1-3 years, while the 'limited' cooling scenario shortens battery life by 1-2 years. Frequent (opportunity) charging can reduce battery life by 1 year for the PHEV10, while frequent charging can extend battery life by one-half year.« less

Off to a good start: the influence of pre- and periconceptional exposures, parental fertility, and nutrition on children's health.

PubMed

Chapin, Robert E; Robbins, Wendie A; Schieve, Laura A; Sweeney, Anne M; Tabacova, Sonia A; Tomashek, Kay M

2004-01-01

The scientific community is developing a compelling body of evidence that shows the importance of the in utero environment (including chemical and hormonal levels) to the ultimate health of the child and even of the aging adult. This article summarizes the evidence that shows this impact begins with conception. Only a full life-cycle evaluation will help us understand these impacts, and only such an understanding will produce logically prioritized mitigation strategies to address the greatest threats first. Clearly, the time for analysis begins when the next generation is but a twinkle in the eye.

Off to a good start: the influence of pre- and periconceptional exposures, parental fertility, and nutrition on children's health.

PubMed Central

Chapin, Robert E; Robbins, Wendie A; Schieve, Laura A; Sweeney, Anne M; Tabacova, Sonia A; Tomashek, Kay M

2004-01-01

The scientific community is developing a compelling body of evidence that shows the importance of the in utero environment (including chemical and hormonal levels) to the ultimate health of the child and even of the aging adult. This article summarizes the evidence that shows this impact begins with conception. Only a full life-cycle evaluation will help us understand these impacts, and only such an understanding will produce logically prioritized mitigation strategies to address the greatest threats first. Clearly, the time for analysis begins when the next generation is but a twinkle in the eye. PMID:14698934

Proteomic Analysis of the Schistosoma mansoni Miracidium.

PubMed

Wang, Tianfang; Zhao, Min; Rotgans, Bronwyn A; Strong, April; Liang, Di; Ni, Guoying; Limpanont, Yanin; Ramasoota, Pongrama; McManus, Donald P; Cummins, Scott F

2016-01-01

Despite extensive control efforts, schistosomiasis continues to be a major public health problem in developing nations in the tropics and sub-tropics. The miracidium, along with the cercaria, both of which are water-borne and free-living, are the only two stages in the life-cycle of Schistosoma mansoni which are involved in host invasion. Miracidia penetrate intermediate host snails and develop into sporocysts, which lead to cercariae that can infect humans. Infection of the snail host by the miracidium represents an ideal point at which to interrupt the parasite's life-cycle. This research focuses on an analysis of the miracidium proteome, including those proteins that are secreted. We have identified a repertoire of proteins in the S. mansoni miracidium at 2 hours post-hatch, including proteases, venom allergen-like proteins, receptors and HSP70, which might play roles in snail-parasite interplay. Proteins involved in energy production and conservation were prevalent, as were proteins predicted to be associated with defence. This study also provides a strong foundation for further understanding the roles that neurohormones play in host-seeking by schistosomes, with the potential for development of novel anthelmintics that interfere with its various life-cycle stages.

Use of and short-term impacts of new cycling infrastructure in inner-Sydney, Australia: a quasi-experimental design.

PubMed

Rissel, Chris; Greaves, Stephen; Wen, Li Ming; Crane, Melanie; Standen, Chris

2015-10-06

Given increasing investment in new cycling infrastructure, it is important to understand its impacts. The Sydney Transport and Health Study evaluates a new 2.4 km bi-directional separated bicycle path in inner-Sydney. This paper describes the users of the new bicycle path, and examines its short-term impacts upon cycling behaviour and perceptions of the local environment. Data were collected from two bike counts at two intersections on the new bicycle path in the intervention area in 2013 and 2014. On-line surveys collected individual participant data in the intervention area and a similar comparison area before the bicycle path was built (2013), and 12 months later (four months after completion) (n = 512). The data included self-reported cycling behaviour, use of the new bicycle path and perceptions of changes in the local environment. Bike counts at two sites on the new bicycle path reported an increase of 23% and 97% respectively at 12 months. However, among the participants in the cohort, there was no change in the self-reported weekly frequency of cycling. One in six (approximately 15%) participants reported using the new bicycle path, with most users (76%) living in the intervention area. Bicycle path users were most likely to be frequent riders (at least weekly) [adjusted odds ratio (AOR) = 7.50, 95 % CI 3.93-14.31], be a high intensity recreational rider (AOR = 4.38, 95 % CI 1.53-12.54) or a low intensity transport rider (AOR = 2.42, 95 % CI 1.17-5.04) and live closer to the bicycle path (AOR = 1.24, 1.13-1.37). Perceptions that the neighbourhood was more pleasant, that there were more people walking and cycling were significantly higher in the intervention area at 12 months (both P values <0.05). Existing cycling behaviour and proximity to the bicycle path were associated with the use of the new bicycle path. Increased use of the new bicycle path as reported by the participants in the intervention area and increased cycling recorded by the bike counts may be due to existing cyclists changing routes to use the new path, and more cyclists from outside the study area using the new path, as study participants did not increase their frequency of cycling. Increases in cycling frequency in the intervention neighbourhood may require a longer lead time, additional promotional activities and further maturation of the Sydney bicycle path network. Understanding how new cycling infrastructure impacts communities can influence the promotion of such infrastructure.

Understanding the initial irreversibility of metal sulfides for sodium-ion batteries via operando techniques

DOE PAGES

Wang, Liguang; Wang, Jiajun; Guo, Fangmin; ...

2018-11-13

Transition metal sulfides are promising high capacity anodes for sodium-ion batteries in terms of the conversion reaction with multiple alkali metal ions. Nonetheless, some inherent challenges such as sluggish sodium ion diffusion kinetics, large volume change, and poor cycle stability limit their implementation. Addressing these issues necessitates a comprehensive understanding the complex sodium ion storage mechanism particularly at the initial cycle. Here, taking nickel subsulfide as a model material, we reveal the complicated conversion reaction mechanism upon the first cycle by combining in operando 2D transmission X-ray microscopy with X-ray absorption spectroscopy, ex-situ 3D nano-tomography, high-energy X-ray diffraction and electrochemicalmore » impedance spectroscopy. This study demonstrates that the microstructure evolution, inherent slow sodium ions diffusion kinetics, and slow ion mobility at the two-phase interface contribute to the high irreversible capacity upon the first cycle. Finally, such understandings are critical for developing the conversion reaction materials with the desired electrochemical activity and stability.« less

Understanding the initial irreversibility of metal sulfides for sodium-ion batteries via operando techniques

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Liguang; Wang, Jiajun; Guo, Fangmin

Transition metal sulfides are promising high capacity anodes for sodium-ion batteries in terms of the conversion reaction with multiple alkali metal ions. Nonetheless, some inherent challenges such as sluggish sodium ion diffusion kinetics, large volume change, and poor cycle stability limit their implementation. Addressing these issues necessitates a comprehensive understanding the complex sodium ion storage mechanism particularly at the initial cycle. Here, taking nickel subsulfide as a model material, we reveal the complicated conversion reaction mechanism upon the first cycle by combining in operando 2D transmission X-ray microscopy with X-ray absorption spectroscopy, ex-situ 3D nano-tomography, high-energy X-ray diffraction and electrochemicalmore » impedance spectroscopy. This study demonstrates that the microstructure evolution, inherent slow sodium ions diffusion kinetics, and slow ion mobility at the two-phase interface contribute to the high irreversible capacity upon the first cycle. Finally, such understandings are critical for developing the conversion reaction materials with the desired electrochemical activity and stability.« less

Ammonia oxidizer populations vary with nitrogen cycling across a tropical montane mean annual temperature gradient

Treesearch

S. Pierre; I. Hewson; J. P. Sparks; C. M. Litton; C. Giardina; P. M. Groffman; T. J. Fahey

2017-01-01

Functional gene approaches have been used to better understand the roles of microbes in driving forest soil nitrogen (N) cycling rates and bioavailability. Ammonia oxidation is a rate limiting step in nitrification, and is a key area for understanding environmental constraints on N availability in forests. We studied how increasing temperature affects the role of...

Prediction/Discussion-Based Learning Cycle versus Conceptual Change Text: Comparative Effects on Students' Understanding of Genetics

ERIC Educational Resources Information Center

Al khawaldeh, Salem A.

2013-01-01

Background and Purpose: The purpose of this study was to investigate the comparative effects of a prediction/discussion-based learning cycle (HPD-LC), conceptual change text (CCT) and traditional instruction on 10th grade students' understanding of genetics concepts. Sample: Participants were 112 10th basic grade male students in three classes of…

The Comparative Effects of Prediction/Discussion-Based Learning Cycle, Conceptual Change Text, and Traditional Instructions on Student Understanding of Genetics

ERIC Educational Resources Information Center

Yilmaz, Diba; Tekkaya, Ceren; Sungur, Semra

2011-01-01

The present study examined the comparative effects of a prediction/discussion-based learning cycle, conceptual change text (CCT), and traditional instructions on students' understanding of genetics concepts. A quasi-experimental research design of the pre-test-post-test non-equivalent control group was adopted. The three intact classes, taught by…

Effect of the Four-Step Learning Cycle Model on Students' Understanding of Concepts Related to Simple Harmonic Motion

ERIC Educational Resources Information Center

Madu, B. C.

2012-01-01

The study explored the efficacy of four-step (4-E) learning cycle approach on students understanding of concepts related to Simple Harmonic Motion (SHM). 124 students (63 for experimental group and 61 for control group) participated in the study. The students' views and ideas in simple Harmonic Achievement test were analyzed qualitatively. The…

Operations Assessment of Launch Vehicle Architectures using Activity Based Cost Models

NASA Technical Reports Server (NTRS)

Ruiz-Torres, Alex J.; McCleskey, Carey

2000-01-01

The growing emphasis on affordability for space transportation systems requires the assessment of new space vehicles for all life cycle activities, from design and development, through manufacturing and operations. This paper addresses the operational assessment of launch vehicles, focusing on modeling the ground support requirements of a vehicle architecture, and estimating the resulting costs and flight rate. This paper proposes the use of Activity Based Costing (ABC) modeling for this assessment. The model uses expert knowledge to determine the activities, the activity times and the activity costs based on vehicle design characteristics. The approach provides several advantages to current approaches to vehicle architecture assessment including easier validation and allowing vehicle designers to understand the cost and cycle time drivers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ehleringer, James; Randerson, James; Lai, Chun-Ta

The objective of the proposed research was to collect data and develop models to improve our understanding of the role of drought and fire impacts on the terrestrial carbon cycle in the western US, including impacts associated with urban systems as they impacted regional carbon cycles. Using data we collected and a synthesis of other measurements, we developed new ways (a) to evaluate the representation of drought stress and fire emissions in the Community Land Model, (b) to model net ecosystem exchange combining ground level atmospheric observations with boundary layer theory, (c) to model upstream impacts of fire and fossilmore » fuel emissions on atmospheric carbon dioxide observations, and (d) to model carbon dioxide observations within urban systems and at the urban-wildland interfaces of forest ecosystems.« less

Population cycles: generalities, exceptions and remaining mysteries.

PubMed

Myers, Judith H

2018-03-28

Population cycles are one of nature's great mysteries. For almost a hundred years, innumerable studies have probed the causes of cyclic dynamics in snowshoe hares, voles and lemmings, forest Lepidoptera and grouse. Even though cyclic species have very different life histories, similarities in mechanisms related to their dynamics are apparent. In addition to high reproductive rates and density-related mortality from predators, pathogens or parasitoids, other characteristics include transgenerational reduced reproduction and dispersal with increasing-peak densities, and genetic similarity among populations. Experiments to stop cyclic dynamics and comparisons of cyclic and noncyclic populations provide some understanding but both reproduction and mortality must be considered. What determines variation in amplitude and periodicity of population outbreaks remains a mystery. © 2018 The Author(s).

Social Network and Content Analysis of the North American Carbon Program as a Scientific Community of Practice

NASA Technical Reports Server (NTRS)

Brown, Molly E.; Ihli, Monica; Hendrick, Oscar; Delgado-Arias, Sabrina; Escobar, Vanessa M.; Griffith, Peter

2015-01-01

The North American Carbon Program (NACP) was formed to further the scientific understanding of sources, sinks, and stocks of carbon in Earth's environment. Carbon cycle science integrates multidisciplinary research, providing decision-support information for managing climate and carbon-related change across multiple sectors of society. This investigation uses the conceptual framework of com-munities of practice (CoP) to explore the role that the NACP has played in connecting researchers into a carbon cycle knowledge network, and in enabling them to conduct physical science that includes ideas from social science. A CoP describes the communities formed when people consistently engage in shared communication and activities toward a common passion or learning goal. We apply the CoP model by using keyword analysis of abstracts from scientific publications to analyze the research outputs of the NACP in terms of its knowledge domain. We also construct a co-authorship network from the publications of core NACP members, describe the structure and social pathways within the community. Results of the content analysis indicate that the NACP community of practice has substantially expanded its research on human and social impacts on the carbon cycle, contributing to a better understanding of how human and physical processes interact with one another. Results of the co-authorship social network analysis demonstrate that the NACP has formed a tightly connected community with many social pathways through which knowledge may flow, and that it has also expanded its network of institutions involved in carbon cycle research over the past seven years.

Terminology gap in hydrological cycle

NASA Astrophysics Data System (ADS)

Zhuo, Lu; Han, Dawei

2016-04-01

Water is central to life on Earth. People have been trying to understand how water moves in the hydrosphere throughout the human history. In the 9th century BC, the famous Greek poet Homer described the hydrological cycle in Iliad as "okeanos whose stream bends back in a circle" with a belief that rivers are ocean-fed from subterranean seas. Later, Aristotle (4th century BC) claimed that most of the water came from underground caverns in which air was transformed into water. It was only until 1674, French scientist Perrault developed the correct concept of the water cycle. In modern times, scientists are interested in understanding the individual processes of the hydrological cycle with a keen focus on runoff which supplies water to rivers, lakes, and oceans. Currently, the prevailing concepts on runoff processes include 'infiltration excess runoff' and 'saturation excess runoff'. However, there is no term to describe another major runoff due to the excess beyond the soil water holding capacity (i.e., the field capacity). We argue that a new term should be introduced to fill this gap, and it could be called 'holding excess runoff' which is compatible with the convention. This new term is significant in correcting a half-century misnomer where 'holding excess runoff' has been incorrectly named as 'saturation excess runoff', which was introduced by the Xinanjiang model in China in 1960s. Similar concept has been adopted in many well-known hydrological models such as PDM and HBV in which the saturation refers to the field capacity. The term 'holding excess runoff' resolves such a common confusion in the hydrological community.

Ecological life histories of the three aquatic nuisance plants, Myriophyllum spicatum, Potamogeton crispus and Elodea canadensis

USGS Publications Warehouse

Nichols, S.A.; Shaw, B.H.

1986-01-01

The life histories of Myriophyllum spicatum L., Elodea canadensis Michx., and Potamogeton crispus L., serious aquatic nuisances in many regions of the world, are reviewed to provide insights into the life style of successful aquatic nuisance plants. Specifically, their distribution and spread in North America; their life cycle, productive and reproductive potential; and their ecosystem relationships are reviewed. Hopefully this review will improve a manager's ability to deal with aquatic nuisance problems. It also provides suggestions for basic research needed to develop more effective management practices. It was found that all three species possess a number of adaptations, including an ability to rapidly propagate vegetatively, an opportunistic nature for obtaining nutrients, a life cycle that favors cool weather, and a number of mechanisms which enhance photosynthetic efficiency, which allow them to proliferate. These three species do provide benefits to the ecosystem through their roles in materials cycling and energy flow. Therefore, management of these species should take an integrated approach which recognizes these benefits. The life history information available about the three species varies tremendously; however, a better understanding of resource gain and allocation is needed to manage all three species. Specifically, more research is needed to provide a better understanding of: 1) the role bicarbonate plays in photosynthesis, 2) the role roots play in supplying CO2 to the plabts, 3) resource accumulation and allocation under different temperature and light regimes, 4) resource allocation on a seasonal basis, and 5) nutrient cycling under different management regimes. ?? 1986 Dr W. Junk Publishers.

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tolar, Bradley B.; Herrmann, Jonathan; Bargar, John R.

In this paper, knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowlede of key N-cycling enzymes from ecologically-relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, though (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) andmore » nitrite reductase (NirK).« less

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea

DOE PAGES

Tolar, Bradley B.; Herrmann, Jonathan; Bargar, John R.; ...

2017-07-05

In this paper, knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowlede of key N-cycling enzymes from ecologically-relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, though (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) andmore » nitrite reductase (NirK).« less

Integrated structural biology and molecular ecology of N-cycling enzymes from ammonia-oxidizing archaea.

PubMed

Tolar, Bradley B; Herrmann, Jonathan; Bargar, John R; van den Bedem, Henry; Wakatsuki, Soichi; Francis, Christopher A

2017-10-01

Knowledge of the molecular ecology and environmental determinants of ammonia-oxidizing organisms is critical to understanding and predicting the global nitrogen (N) and carbon cycles, but an incomplete biochemical picture hinders in vitro studies of N-cycling enzymes. Although an integrative structural and dynamic characterization at the atomic scale would advance our understanding of function tremendously, structural knowledge of key N-cycling enzymes from ecologically relevant ammonia oxidizers is unfortunately extremely limited. Here, we discuss the challenges and opportunities for examining the ecology of ammonia-oxidizing organisms, particularly uncultivated Thaumarchaeota, through (meta)genome-driven structural biology of the enzymes ammonia monooxygenase (AMO) and nitrite reductase (NirK). © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

The solar dynamo and prediction of sunspot cycles

NASA Astrophysics Data System (ADS)

Dikpati, Mausumi

2012-07-01

Much progress has been made in understanding the solar dynamo since Parker first developed the concepts of dynamo waves and magnetic buoyancy around 1955, and the German school first formulated the solar dynamo using the mean-field formalism. The essential ingredients of these mean-field dynamos are turbulent magnetic diffusivity, a source of lifting of flux, or 'alpha-effect', and differential rotation. With the advent of helioseismic and other observations at the Sun's photosphere and interior, as well as theoretical understanding of solar interior dynamics, solar dynamo models have evolved both in the realm of mean-field and beyond mean-field models. After briefly discussing the status of these models, I will focus on a class of mean-field model, called flux-transport dynamos, which include meridional circulation as an essential additional ingredient. Flux-transport dynamos have been successful in simulating many global solar cycle features, and have reached the stage that they can be used for making solar cycle predictions. Meridional circulation works in these models like a conveyor-belt, carrying a memory of the magnetic fields from 5 to 20 years back in past. The lower is the magnetic diffusivity, the longer is the model's memory. In the terrestrial system, the great-ocean conveyor-belt in oceanic models and Hadley, polar and Ferrel circulation cells in the troposphere, carry signatures from the past climatological events and influence the determination of future events. Analogously, the memory provided by the Sun's meridional circulation creates the potential for flux-transport dynamos to predict future solar cycle properties. Various groups in the world have built flux-transport dynamo-based predictive tools, which nudge the Sun's surface magnetic data and integrated forward in time to forecast the amplitude of the currently ascending cycle 24. Due to different initial conditions and different choices of unknown model-ingredients, predictions can vary; so it is for their cycle 24 forecasts. We all await the peak of cycle 24. I will close by discussing the prospects of improving dynamo-based predictive tools using more sophisticated data-assimilation techniques, such as the Ensemble Kalman Filter method and variational approaches.

Linking Nitrogen-Cycling Microbial Communities to Environmental Fluctuations and Biogeochemical Activity in a Large, Urban Estuary: the San Francisco Bay-Delta

NASA Astrophysics Data System (ADS)

Francis, C.

2015-12-01

Nitrogen (N) availability is an important factor controlling productivity and thus carbon cycling in estuaries. The fate of N in estuaries depends on the activities of the microbes that carry out the N-cycle, which in turn depend on factors such as organic matter availability, dissolved inorganic N, salinity, oxygen, and temperature. Key microbial N transformations include nitrification (the aerobic oxidation of ammonia to nitrite and nitrate) and denitrification (the anaerobic reduction of nitrate to dinitrogen gas). While denitrification leads to N loss, nitrification is the only link between reduced N (produced by decomposition) and oxidized N (substrates for N loss processes), and both processes are known to produce nitrous oxide (N2O), a potent greenhouse gas. Understanding controls of N-cycling in the San Francisco Bay-Delta (SFBD)—the largest estuary on the west coast of North America—is particularly important, as this urban estuary is massively polluted with N, even compared to classic "eutrophic" systems. Interestingly, the SFBD has been spared the detrimental consequences of nutrient enrichment, largely due to high suspended sediment concentrations (and thus low light penetration) throughout the water column, combined with high grazing pressure. However, the recent "clearing" of SFBD waters due to a sharp decrease in suspended sediments may significantly alter the ecology of the estuary, by increasing phytoplankton growth. Thus, the SFBD may be losing its historical resilience to eutrophication, and may soon be "high-nutrient, low-chlorophyll" no more. Elucidating the environmental factors affecting the community structure, activity, and functioning of N-cycling microbes in SFBD is crucial for determining how changes in turbidity and productivity will be propagated throughout the ecosystem. While substantial ecological research in the SFBD has focused on phytoplankton and food webs, bacterial and archaeal communities have received far less attention. Using a combination of molecular, biogeochemical, and 'omics' approaches, we have been examining how N-cycling microbial communities throughout the SFBD change in relation to environmental fluctuations—a critical step in understanding how microbial populations drive biogeochemical cycling in this estuary.

Narratives of marginalized cyclists : understanding obstacles to utilitarian cycling among women and minorities in Portland, OR : final report.

DOT National Transportation Integrated Search

2017-05-01

Research has demonstrated that everyday or utilitarian forms of cycling are most likely to generate positive : population-level health impacts (Garrard et al., 2012), yet significant deterrents to routine cycling remain, : particularly for women and ...

Educational Focuses in Organisational Life Cycles.

ERIC Educational Resources Information Center

Miller, Harry G.

1985-01-01

Presents four stages frequently associated with the stages of an organization's life cycle: experimentation, growth, maturity, and decline or stability. The author also demonstrates that the impact of employment and thus training related to organizational life cycles suggests a need for understanding the technical preparation required for…

Topology and Control of the Cell-Cycle-Regulated Transcriptional Circuitry

PubMed Central

Haase, Steven B.; Wittenberg, Curt

2014-01-01

Nearly 20% of the budding yeast genome is transcribed periodically during the cell division cycle. The precise temporal execution of this large transcriptional program is controlled by a large interacting network of transcriptional regulators, kinases, and ubiquitin ligases. Historically, this network has been viewed as a collection of four coregulated gene clusters that are associated with each phase of the cell cycle. Although the broad outlines of these gene clusters were described nearly 20 years ago, new technologies have enabled major advances in our understanding of the genes comprising those clusters, their regulation, and the complex regulatory interplay between clusters. More recently, advances are being made in understanding the roles of chromatin in the control of the transcriptional program. We are also beginning to discover important regulatory interactions between the cell-cycle transcriptional program and other cell-cycle regulatory mechanisms such as checkpoints and metabolic networks. Here we review recent advances and contemporary models of the transcriptional network and consider these models in the context of eukaryotic cell-cycle controls. PMID:24395825

Understanding reproducibility of human IVF traits to predict next IVF cycle outcome.

PubMed

Wu, Bin; Shi, Juanzi; Zhao, Wanqiu; Lu, Suzhen; Silva, Marta; Gelety, Timothy J

2014-10-01

Evaluating the failed IVF cycle often provides useful prognostic information. Before undergoing another attempt, patients experiencing an unsuccessful IVF cycle frequently request information about the probability of future success. Here, we introduced the concept of reproducibility and formulae to predict the next IVF cycle outcome. The experimental design was based on the retrospective review of IVF cycle data from 2006 to 2013 in two different IVF centers and statistical analysis. The reproducibility coefficients (r) of IVF traits including number of oocytes retrieved, oocyte maturity, fertilization, embryo quality and pregnancy were estimated using the interclass correlation coefficient between the repeated IVF cycle measurements for the same patient by variance component analysis. The formulae were designed to predict next IVF cycle outcome. The number of oocytes retrieved from patients and their fertilization rate had the highest reproducibility coefficients (r = 0.81 ~ 0.84), which indicated a very close correlation between the first retrieval cycle and subsequent IVF cycles. Oocyte maturity and number of top quality embryos had middle level reproducibility (r = 0.38 ~ 0.76) and pregnancy rate had a relative lower reproducibility (r = 0.23 ~ 0.27). Based on these parameters, the next outcome for these IVF traits might be accurately predicted by the designed formulae. The introduction of the concept of reproducibility to our human IVF program allows us to predict future IVF cycle outcomes. The traits of oocyte numbers retrieved, oocyte maturity, fertilization, and top quality embryos had higher or middle reproducibility, which provides a basis for accurate prediction of future IVF outcomes. Based on this prediction, physicians may counsel their patients or change patient's stimulation plans, and laboratory embryologists may improve their IVF techniques accordingly.

The 1994 Arctic Ocean Section. The First Major Scientific Crossing of the Arctic Ocean,

DTIC Science & Technology

1996-09-01

contribute to the international effort to better understand the role of the Arctic Ocean in the global carbon cycle and climate change. Summar...Barium Distributions in the Arctic Ocean ? ........................ 32 Biology and the Carbon Cycle Cycling of Organic Carbon in the Central Arctic...of Heterotrophic Bacteria and Protists in the Arctic Ocean Carbon Cycle............. 40

Understanding bicycling in cities using system dynamics modelling.

PubMed

Macmillan, Alexandra; Woodcock, James

2017-12-01

Increasing urban bicycling has established net benefits for human and environmental health. Questions remain about which policies are needed and in what order, to achieve an increase in cycling while avoiding negative consequences. Novel ways of considering cycling policy are needed, bringing together expertise across policy, community and research to develop a shared understanding of the dynamically complex cycling system. In this paper we use a collaborative learning process to develop a dynamic causal model of urban cycling to develop consensus about the nature and order of policies needed in different cycling contexts to optimise outcomes. We used participatory system dynamics modelling to develop causal loop diagrams (CLDs) of cycling in three contrasting contexts: Auckland, London and Nijmegen. We combined qualitative interviews and workshops to develop the CLDs. We used the three CLDs to compare and contrast influences on cycling at different points on a "cycling trajectory" and drew out policy insights. The three CLDs consisted of feedback loops dynamically influencing cycling, with significant overlap between the three diagrams. Common reinforcing patterns emerged: growing numbers of people cycling lifts political will to improve the environment; cycling safety in numbers drives further growth; and more cycling can lead to normalisation across the population. By contrast, limits to growth varied as cycling increases. In Auckland and London, real and perceived danger was considered the main limit, with added barriers to normalisation in London. Cycling congestion and "market saturation" were important in the Netherlands. A generalisable, dynamic causal theory for urban cycling enables a more ordered set of policy recommendations for different cities on a cycling trajectory. Participation meant the collective knowledge of cycling stakeholders was represented and triangulated with research evidence. Extending this research to further cities, especially in low-middle income countries, would enhance generalizability of the CLDs.

Mapping commuter cycling risk in urban areas.

PubMed

Yiannakoulias, Nikolaos; Bennet, Scott A; Scott, Darren M

2012-03-01

Cycling is becoming an increasingly important transportation option for commuters. Cycling offers exercise opportunities and reduces the burden of motor vehicle travel on society. Mapping the risk of collision between cyclists and motor vehicles in urban areas is important to understanding safe cyclist route opportunities, making informed transportation planning decisions, and exploring patterns of injury epidemiology. To date, many geographic analyses and representations of cyclist risk have not taken the concept of exposure into account. Instead, risk is either expressed as a rate per capita, or as a count of events. Using data associated with the City of Hamilton, Canada, we illustrate a method for mapping commuter cyclist collision risk per distance travelled. This measure can be used to more realistically represent the underlying geography of cycling risk, and provide more geographically and empirically meaningful information to those interested in understanding how cycling safety varies over space. Copyright © 2011 Elsevier Ltd. All rights reserved.

Toward an integrated monitoring framework to assess the effects of tropical forest degradation and recovery on carbon stocks and biodiversity.

PubMed

Bustamante, Mercedes M C; Roitman, Iris; Aide, T Mitchell; Alencar, Ane; Anderson, Liana O; Aragão, Luiz; Asner, Gregory P; Barlow, Jos; Berenguer, Erika; Chambers, Jeffrey; Costa, Marcos H; Fanin, Thierry; Ferreira, Laerte G; Ferreira, Joice; Keller, Michael; Magnusson, William E; Morales-Barquero, Lucia; Morton, Douglas; Ometto, Jean P H B; Palace, Michael; Peres, Carlos A; Silvério, Divino; Trumbore, Susan; Vieira, Ima C G

2016-01-01

Tropical forests harbor a significant portion of global biodiversity and are a critical component of the climate system. Reducing deforestation and forest degradation contributes to global climate-change mitigation efforts, yet emissions and removals from forest dynamics are still poorly quantified. We reviewed the main challenges to estimate changes in carbon stocks and biodiversity due to degradation and recovery of tropical forests, focusing on three main areas: (1) the combination of field surveys and remote sensing; (2) evaluation of biodiversity and carbon values under a unified strategy; and (3) research efforts needed to understand and quantify forest degradation and recovery. The improvement of models and estimates of changes of forest carbon can foster process-oriented monitoring of forest dynamics, including different variables and using spatially explicit algorithms that account for regional and local differences, such as variation in climate, soil, nutrient content, topography, biodiversity, disturbance history, recovery pathways, and socioeconomic factors. Generating the data for these models requires affordable large-scale remote-sensing tools associated with a robust network of field plots that can generate spatially explicit information on a range of variables through time. By combining ecosystem models, multiscale remote sensing, and networks of field plots, we will be able to evaluate forest degradation and recovery and their interactions with biodiversity and carbon cycling. Improving monitoring strategies will allow a better understanding of the role of forest dynamics in climate-change mitigation, adaptation, and carbon cycle feedbacks, thereby reducing uncertainties in models of the key processes in the carbon cycle, including their impacts on biodiversity, which are fundamental to support forest governance policies, such as Reducing Emissions from Deforestation and Forest Degradation. © 2015 John Wiley & Sons Ltd.

A Classroom Learning Cycle: Using Diagrams to Classify Matter.

ERIC Educational Resources Information Center

James, Helen J.; Nelson, Samuel L.

1981-01-01

A learning cycle involves the active participation of students in exploration, invention, and application phases. Describes one such learning cycle dealing with classification of matter and designed to provide students with an understanding of the terms: atom, molecule, element, compound, solution, and heterogeneous matter. (Author/JN)

A Game to Teach the Life Cycles of Fungi

ERIC Educational Resources Information Center

Blum, Abraham

1976-01-01

Presented is a biological game utilized to teach fungi life cycles to secondary biology students. The game is designed to overcome difficulties of correlating schematic drawings with images seen through the microscope, correlating life cycles of fungi and host, and understanding cyclic development of fungi. (SL)

The Process of Life Cycle Cost Analysis: Projecting Economic Consequences of Design Decisions

ERIC Educational Resources Information Center

AIA Journal, 1976

1976-01-01

Life-cycle cost analysis deals with both present and future costs and attempts to relate the two as a basis for making decisions. This article lays the groundwork for a better understanding of the techniques of life-cycle cost analysis. (Author/MLF)

Effect of tidal cycle and food intake on the baseline plasma corticosterone rhythm in intertidally foraging marine iguanas.

PubMed

Woodley, Sarah K; Painter, Danika L; Moore, Michael C; Wikelski, Martin; Romero, L Michael

2003-06-15

In most species, plasma levels of baseline glucocorticoids such as corticosterone (B) have a circadian rhythm. This rhythm can be entrained by both photoperiod and food intake and is related to aspects of energy intake and metabolism. Marine iguanas (Amblyrhynchus cristatus) offer a unique opportunity to better understand the relative importance of the light:dark cycle versus food intake in influencing the rhythm in baseline B in a natural system. Compared to other species, food intake is not as strictly determined by the phase of the light:dark cycle. Animals feed in the intertidal zone so feeding activity is heavily influenced by the tidal cycle. We measured baseline plasma B levels in free-living iguanas over several 24-h periods that varied in the timing of low tide/foraging activity. We found that baseline B levels were higher during the day relative to night. However, when low tide occurred during the day, baseline B levels dropped coincident with the timing of low tide. Whether the baseline B rhythm (including the drop during foraging) is an endogenous rhythm with a circatidal component, or is simply a result of feeding and associated physiological changes needs to be tested. Together, these data suggest that the baseline B rhythm in marine iguanas is influenced by the tidal cycle/food intake as well as the light:dark cycle.

The origin, source, and cycling of methane in deep crystalline rock biosphere.

PubMed

Kietäväinen, Riikka; Purkamo, Lotta

2015-01-01

The emerging interest in using stable bedrock formations for industrial purposes, e.g., nuclear waste disposal, has increased the need for understanding microbiological and geochemical processes in deep crystalline rock environments, including the carbon cycle. Considering the origin and evolution of life on Earth, these environments may also serve as windows to the past. Various geological, chemical, and biological processes can influence the deep carbon cycle. Conditions of CH4 formation, available substrates and time scales can be drastically different from surface environments. This paper reviews the origin, source, and cycling of methane in deep terrestrial crystalline bedrock with an emphasis on microbiology. In addition to potential formation pathways of CH4, microbial consumption of CH4 is also discussed. Recent studies on the origin of CH4 in continental bedrock environments have shown that the traditional separation of biotic and abiotic CH4 by the isotopic composition can be misleading in substrate-limited environments, such as the deep crystalline bedrock. Despite of similarities between Precambrian continental sites in Fennoscandia, South Africa and North America, where deep methane cycling has been studied, common physicochemical properties which could explain the variation in the amount of CH4 and presence or absence of CH4 cycling microbes were not found. However, based on their preferred carbon metabolism, methanogenic microbes appeared to have similar spatial distribution among the different sites.

The origin, source, and cycling of methane in deep crystalline rock biosphere

PubMed Central

Kietäväinen, Riikka; Purkamo, Lotta

2015-01-01

The emerging interest in using stable bedrock formations for industrial purposes, e.g., nuclear waste disposal, has increased the need for understanding microbiological and geochemical processes in deep crystalline rock environments, including the carbon cycle. Considering the origin and evolution of life on Earth, these environments may also serve as windows to the past. Various geological, chemical, and biological processes can influence the deep carbon cycle. Conditions of CH4 formation, available substrates and time scales can be drastically different from surface environments. This paper reviews the origin, source, and cycling of methane in deep terrestrial crystalline bedrock with an emphasis on microbiology. In addition to potential formation pathways of CH4, microbial consumption of CH4 is also discussed. Recent studies on the origin of CH4 in continental bedrock environments have shown that the traditional separation of biotic and abiotic CH4 by the isotopic composition can be misleading in substrate-limited environments, such as the deep crystalline bedrock. Despite of similarities between Precambrian continental sites in Fennoscandia, South Africa and North America, where deep methane cycling has been studied, common physicochemical properties which could explain the variation in the amount of CH4 and presence or absence of CH4 cycling microbes were not found. However, based on their preferred carbon metabolism, methanogenic microbes appeared to have similar spatial distribution among the different sites. PMID:26236303

The Development of Vocational Vehicle Drive Cycles and Segmentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duran, Adam W.; Phillips, Caleb T.; Konan, Arnaud M.

Under a collaborative interagency agreement between the U.S. Environmental Protection Agency and the U.S Department of Energy (DOE), the National Renewable Energy Laboratory (NREL) performed a series of in-depth analyses to characterize the on-road driving behavior including distributions of vehicle speed, idle time, accelerations and decelerations, and other driving metrics of medium- and heavy-duty vocational vehicles operating within the United States. As part of this effort, NREL researchers segmented U.S. medium- and heavy-duty vocational vehicle driving characteristics into three distinct operating groups or clusters using real world drive cycle data collected at 1 Hz and stored in NREL's Fleet DNAmore » database. The Fleet DNA database contains millions of miles of historical real-world drive cycle data captured from medium- and heavy vehicles operating across the United States. The data encompass data from existing DOE activities as well as contributions from valued industry stakeholder participants. For this project, data captured from 913 unique vehicles comprising 16,250 days of operation were drawn from the Fleet DNA database and examined. The Fleet DNA data used as a source for this analysis has been collected from a total of 30 unique fleets/data providers operating across 22 unique geographic locations spread across the United States. This includes locations with topology ranging from the foothills of Denver, Colorado, to the flats of Miami, Florida. The range of fleets, geographic locations, and total number of vehicles analyzed ensures results that include the influence of these factors. While no analysis will be perfect without unlimited resources and data, it is the researchers understanding that the Fleet DNA database is the largest and most thorough publicly accessible vocational vehicle usage database currently in operation. This report includes an introduction to the Fleet DNA database and the data contained within, a presentation of the results of the statistical analysis performed by NREL, review of the logistic model developed to predict cluster membership, and a discussion and detailed summary of the development of the vocational drive cycle weights and representative transient drive cycles for testing and simulation. Additional discussion of known limitations and potential future work are also included in the report content.« less

Physics Education Research at the Upper Division at the University of Maine

NASA Astrophysics Data System (ADS)

Thompson, John

2013-04-01

Researchers from the University of Maine Physics Education Research Laboratory are conducting several investigations of the learning and teaching of physics beyond the introductory level. Content topics include intermediate mechanics, electronics, thermodynamics and statistical mechanics. One focus of our work is the identification and addressing of specific student difficulties with topics such as damped harmonic motion, bipolar junction transistor (BJT) circuits, work, entropy, and the Boltzmann factor. Student understanding and use of the underlying mathematics has been one important emerging theme, including definite integrals, partial derivatives, and linear differential equations. Recent work in mechanics has focused on understanding the interplay of mathematical and physical reasoning when describing damped harmonic motion, including framing and representational issues. In electronics, there has been an ongoing investigation of student understanding of the behavior of basic BJT follower and amplifier circuits as well as related issues of signal and bias. In thermal physics, student understanding of state functions, heat engines and the Carnot cycle, the First and Second Laws of thermodynamics, and the macroscopic and microscopic perspectives on entropy have been investigated. The greater content sophistication in these courses has drawn attention to the specific needs, constraints, and advantages of instructional materials tailored to the upper division. Future directions include more attention to interdisciplinary topics across mathematics, physics, and engineering in particular, as well as metacognition in the laboratory.

Facilitating Conceptual Change in Understanding State of Matter and Solubility Concepts by Using 5E Learning Cycle Model

ERIC Educational Resources Information Center

Ceylan, Eren; Geban, Omer

2009-01-01

The main purpose of the study was to compare the effectiveness of 5E learning cycle model based instruction and traditionally designed chemistry instruction on 10th grade students' understanding of state of matter and solubility concepts. In this study, 119 tenth grade students from chemistry courses instructed by same teacher from an Anatolian…

The Effect of Recycling Education on High School Students' Conceptual Understanding about Ecology: A Study on Matter Cycle

ERIC Educational Resources Information Center

Ugulu, Ilker; Yorek, Nurettin; Baslar, Suleyman

2015-01-01

The objective of this study is to analyze and determine whether a developed recycling education program would lead to a positive change in the conceptual understanding of ecological concepts associated with matter cycles by high school students. The research was conducted on 68 high school 10th grade students (47 female and 21 male students). The…

Nano-Launcher Technologies, Approaches, and Life Cycle Assessment. Phase II

NASA Technical Reports Server (NTRS)

Zapata, Edgar

2014-01-01

Assist in understanding NASA technology and investment approaches, and other driving factors, necessary for enabling dedicated nano-launchers by industry at a cost and flight rate that (1) could support and be supported by an emerging nano-satellite market and (2) would benefit NASAs needs. Develop life-cycle cost, performance and other NASA analysis tools or models required to understand issues, drivers and challenges.

Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii.

PubMed

Lun, Zhao-Rong; Lai, De-Hua; Wen, Yan-Zi; Zheng, Ling-Ling; Shen, Ji-Long; Yang, Ting-Bo; Zhou, Wen-Liang; Qu, Liang-Hu; Hide, Geoff; Ayala, Francisco J

2015-07-21

Cancer is a general name for more than 100 malignant diseases. It is postulated that all cancers start from a single abnormal cell that grows out of control. Untreated cancers can cause serious consequences and deaths. Great progress has been made in cancer research that has significantly improved our knowledge and understanding of the nature and mechanisms of the disease, but the origins of cancer are far from being well understood due to the limitations of suitable model systems and to the complexities of the disease. In view of the fact that cancers are found in various species of vertebrates and other metazoa, here, we suggest that cancer also occurs in parasitic protozoans such as Trypanosoma brucei, a blood parasite, and Toxoplasma gondii, an obligate intracellular pathogen. Without treatment, these protozoan cancers may cause severe disease and death in mammals, including humans. The simpler genomes of these single-cell organisms, in combination with their complex life cycles and fascinating life cycle differentiation processes, may help us to better understand the origins of cancers and, in particular, leukemias.

Improving bicycle safety: The role of paediatricians and family physicians

PubMed Central

LeBlanc, John C; Huybers, Sherry

2004-01-01

Cycling is a complex activity requiring motor, sensory and cognitive skills that develop at different rates from childhood to adolescence. While children can successfully ride a two-wheeled bicycle at age five or six, judgment of road hazards are poor at that age and matures slowly until adult-like judgment is reached in early adolescence. Safe cycling depends on the care, skills and judgment of cyclists and motorists; roadway design that promotes safe coexistence of bicycles and motor vehicles; and the use of safety devices, including bicycle helmets, lights and reflective tape. Whereas, research into optimal roadway design and educational programs for drivers to improve road safety has yielded contradictory results, the benefits of bicycle helmet use and programs to enhance their use have been clearly shown. This paper has the following objectives for paediatricians and family physicians: To understand the relationship between bicycle safety and children’s motor and cognitive skills.To understand the effectiveness and limitations of strategies to improve bicycle safety.To describe activities to promote bicycle safety that physicians can undertake in clinical settings and in the community. PMID:19657515

Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii

PubMed Central

Lun, Zhao-Rong; Lai, De-Hua; Wen, Yan-Zi; Zheng, Ling-Ling; Shen, Ji-Long; Yang, Ting-Bo; Zhou, Wen-Liang; Qu, Liang-Hu; Hide, Geoff; Ayala, Francisco J.

2015-01-01

Cancer is a general name for more than 100 malignant diseases. It is postulated that all cancers start from a single abnormal cell that grows out of control. Untreated cancers can cause serious consequences and deaths. Great progress has been made in cancer research that has significantly improved our knowledge and understanding of the nature and mechanisms of the disease, but the origins of cancer are far from being well understood due to the limitations of suitable model systems and to the complexities of the disease. In view of the fact that cancers are found in various species of vertebrates and other metazoa, here, we suggest that cancer also occurs in parasitic protozoans such as Trypanosoma brucei, a blood parasite, and Toxoplasma gondii, an obligate intracellular pathogen. Without treatment, these protozoan cancers may cause severe disease and death in mammals, including humans. The simpler genomes of these single-cell organisms, in combination with their complex life cycles and fascinating life cycle differentiation processes, may help us to better understand the origins of cancers and, in particular, leukemias. PMID:26195778

RNA-seq in kinetoplastids: A powerful tool for the understanding of the biology and host-pathogen interactions.

PubMed

Patino, Luz Helena; Ramírez, Juan David

2017-04-01

The kinetoplastids include a large number of parasites responsible for serious diseases in humans and animals (Leishmania and Trypanosoma brucei) considered endemic in several regions of the world. These parasites are characterized by digenetic life cycles that undergo morphological and genetic changes that allow them to adapt to different microenvironments on their vertebrates and invertebrates hosts. Recent advances in ´omics´ technology, specifically transcriptomics have allowed to reveal aspects associated with such molecular changes. So far, different techniques have been used to evaluate the gene expression profile during the various stages of the life cycle of these parasites and during the host-parasite interactions. However, some of them have serious drawbacks that limit the precise study and full understanding of their transcriptomes. Therefore, recently has been implemented the latest technology (RNA-seq), which overcomes the drawbacks of traditional methods. In this review, studies that so far have used RNA-seq are presented and allowed to expand our knowledge regarding the biology of these parasites and their interactions with their hosts. Copyright © 2017 Elsevier B.V. All rights reserved.

NASA/GSFC Research Activities for the Global Ocean Carbon Cycle: A Prospectus for the 21st Century

NASA Technical Reports Server (NTRS)

Gregg, W. W.; Behrenfield, M. J.; Hoge, F. E.; Esaias, W. E.; Huang, N. E.; Long, S. R.; McClain, C. R.

2000-01-01

There are increasing concerns that anthropogenic inputs of carbon dioxide into the Earth system have the potential for climate change. In response to these concerns, the GSFC Laboratory for Hydrospheric Processes has formed the Ocean Carbon Science Team (OCST) to contribute to greater understanding of the global ocean carbon cycle. The overall goals of the OCST are to: 1) detect changes in biological components of the ocean carbon cycle through remote sensing of biooptical properties, 2) refine understanding of ocean carbon uptake and sequestration through application of basic research results, new satellite algorithms, and improved model parameterizations, 3) develop and implement new sensors providing critical missing environmental information related to the oceanic carbon cycle and the flux of CO2 across the air-sea interface. The specific objectives of the OCST are to: 1) establish a 20-year time series of ocean color, 2) develop new remote sensing technologies, 3) validate ocean remote sensing observations, 4) conduct ocean carbon cycle scientific investigations directly related to remote sensing data, emphasizing physiological, empirical and coupled physical/biological models, satellite algorithm development and improvement, and analysis of satellite data sets. These research and mission objectives are intended to improve our understanding of global ocean carbon cycling and contribute to national goals by maximizing the use of remote sensing data.

X-ray nanotomography analysis of the microstructural evolution of LiMn 2O 4 electrodes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Zhao; Han, Kai; Chen-Wiegart, Yu-chen Karen

One of the greatest challenges for advancing lithium-ion battery (LIB) technology is to minimize cell degradation during operation for long-term stability. To this end, it is important to understand how cell performance during operation relates to complex LIB microstructures. In this report, transmission X-ray microscopy (TXM) nanotomography is used to gain quantitative three-dimensional (3D) microstructure-performance correlations of LIB cathodes during cycling. The 3D microstructures of LiMn 2O 4 (LMO) electrodes, cycled under different conditions, including cycle number, operating voltage, and temperature, are characterized via TXM and statistically analyzed to investigate the impact of cycling conditions on the electrode microstructural evolutionmore » and cell performance. It is found that the number of cracks formed within LMO particles correlated with capacity fade. For the cell cycled at elevated temperatures, which exhibits the most severe capacity fade among all cells tested, mechanical cracking observed in TXM is not the only dominant contributor to the observed degradation. Mn 2+ dissolution, as verified by detection of Mn on the counter electrode by energy dispersive spectrometry, also contributed. The current work demonstrate 3D TXM nanotomography as a powerful tool to help probe in-depth.« less

X-ray nanotomography analysis of the microstructural evolution of LiMn 2O 4 electrodes

DOE PAGES

Liu, Zhao; Han, Kai; Chen-Wiegart, Yu-chen Karen; ...

2017-06-17

One of the greatest challenges for advancing lithium-ion battery (LIB) technology is to minimize cell degradation during operation for long-term stability. To this end, it is important to understand how cell performance during operation relates to complex LIB microstructures. In this report, transmission X-ray microscopy (TXM) nanotomography is used to gain quantitative three-dimensional (3D) microstructure-performance correlations of LIB cathodes during cycling. The 3D microstructures of LiMn 2O 4 (LMO) electrodes, cycled under different conditions, including cycle number, operating voltage, and temperature, are characterized via TXM and statistically analyzed to investigate the impact of cycling conditions on the electrode microstructural evolutionmore » and cell performance. It is found that the number of cracks formed within LMO particles correlated with capacity fade. For the cell cycled at elevated temperatures, which exhibits the most severe capacity fade among all cells tested, mechanical cracking observed in TXM is not the only dominant contributor to the observed degradation. Mn 2+ dissolution, as verified by detection of Mn on the counter electrode by energy dispersive spectrometry, also contributed. The current work demonstrate 3D TXM nanotomography as a powerful tool to help probe in-depth.« less

Key enzymes of the retinoid (visual) cycle in vertebrate retina

PubMed Central

Kiser, Philip D.; Golczak, Marcin; Maeda, Akiko; Palczewski, Krzysztof

2011-01-01

A major goal in vision research over the past few decades has been to understand the molecular details of retinoid processing within the retinoid (visual) cycle. This includes the consequences of side reactions that result from delayed all-trans-retinal clearance and condensation with phospholipids that characterize a variety of serious retinal diseases. Knowledge of the basic retinoid biochemistry involved in these diseases is essential for development of effective therapeutics. Photoisomerization of the 11-cis-retinal chromophore of rhodopsin triggers a complex set of metabolic transformations collectively termed phototransduction that ultimately lead to light perception. Continuity of vision depends on continuous conversion of all-trans-retinal back to the 11-cis-retinal isomer. This process takes place in a series of reactions known as the retinoid cycle, which occur in photoreceptor and RPE cells. All-trans-retinal, the initial substrate of this cycle, is a chemically reactive aldehyde that can form toxic conjugates with proteins and lipids. Therefore, much experimental effort has been devoted to elucidate molecular mechanisms of the retinoid cycle and all-trans-retinal-mediated retinal degeneration, resulting in delineation of many key steps involved in regenerating 11-cis-retinal. Three particularly important reactions are catalyzed by enzymes broadly classified as acyltransferases, short-chain dehydrogenases/reductases and carotenoid/retinoid isomerases/oxygenases. PMID:21447403

N cycling in SPRUCE (Spruce Peatlands Response Under ...

EPA Pesticide Factsheets

Peatlands located in boreal regions make up a third of global wetland area and are expected to have the highest temperature increases in response to climate change. As climate warms, we expect peat decomposition may accelerate, altering the cycling of nitrogen. Alterations in the nitrogen cycle can have consequences on NO3, NH4 availability or pollution, and potentially increase nitrous oxide (N2O) emissions, a persistent greenhouse gas (GHG). These consequences can cascade to altering whole ecosystem functions and effecting human health.We are investigating nitrogen cycling response to elevated temperature and CO2 in a boreal peatland. Spruce and Peatland Responses Under Climate and Environmental Change (SPRUCE) project initiated soil warming in 2014 in ten peatland mesocosms (five temperature treatments from ambient (+0°C) to +9°C) and elevated CO2 in half of the mesocosms in 2016. Peat cores at three depths (acrotelm, catotelm, deep peat) were analyzed in the laboratory for denitrification, nitrification, and ammonification. We expect denitrification, nitrification, and ammonification rates to increase, and denitrification efficiency to decrease with rising temperatures- potentially contaminating water resources with NO3, NH4 and increase N2O concentrations in our atmosphere. This research will enhance the scientific understanding of how nitrogen cycling, an important functional eco-service, responds under environmental conditions including elevated CO2

Deciphering life history transcriptomes in different environments

PubMed Central

Etges, William J.; Trotter, Meredith V.; de Oliveira, Cássia C.; Rajpurohit, Subhash; Gibbs, Allen G.; Tuljapurkar, Shripad

2014-01-01

We compared whole transcriptome variation in six preadult stages and seven adult female ages in two populations of cactophilic Drosophila mojavensis reared on two host plants in order to understand how differences in gene expression influence standing life history variation. We used Singular Value Decomposition (SVD) to identify dominant trajectories of life cycle gene expression variation, performed pair-wise comparisons of stage and age differences in gene expression across the life cycle, identified when genes exhibited maximum levels of life cycle gene expression, and assessed population and host cactus effects on gene expression. Life cycle SVD analysis returned four significant components of transcriptional variation, revealing functional enrichment of genes responsible for growth, metabolic function, sensory perception, neural function, translation and aging. Host cactus effects on female gene expression revealed population and stage specific differences, including significant host plant effects on larval metabolism and development, as well as adult neurotransmitter binding and courtship behavior gene expression levels. In 3 - 6 day old virgin females, significant up-regulation of genes associated with meiosis and oogenesis was accompanied by down-regulation of genes associated with somatic maintenance, evidence for a life history tradeoff. The transcriptome of D. mojavensis reared in natural environments throughout its life cycle revealed core developmental transitions and genome wide influences on life history variation in natural populations. PMID:25442828

Carbon Goes To…

ERIC Educational Resources Information Center

Savasci, Funda

2014-01-01

The purposes of this activity are to help middle school students understand the carbon cycle and realize how human activities affect the carbon cycle. This activity consists of two parts. The first part of the activity focuses on the carbon cycle, especially before the Industrial Revolution, while the second part of the activity focuses on how…

Life-cycle energy and emissions inventories for motorcycles, diesel automobiles, school buses, electric buses, Chicago rail, and New York City rail

DOT National Transportation Integrated Search

2009-05-01

The development of life-cycle energy and emissions factors for passenger transportation modes : is critical for understanding the total environmental costs of travel. Previous life-cycle studies : have focused on the automobile given its dominating s...

Models of the Organizational Life Cycle: Applications to Higher Education.

ERIC Educational Resources Information Center

Cameron, Kim S.; Whetten, David A.

1983-01-01

A review of models of group and organization life cycle development is provided and the applicability of those models for institutions of higher education are discussed. An understanding of the problems and characteristics present in different life cycle stages can help institutions manage transitions more effectively. (Author/MLW)

Monitoring and Predicting the Export and Fate of Global Ocean Net Primary Production: The EXPORTS Field Program

NASA Astrophysics Data System (ADS)

Exports Science Definition Team

2016-04-01

Ocean ecosystems play a critical role in the Earth's carbon cycle and its quantification on global scales remains one of the greatest challenges in global ocean biogeochemistry. The goal of the EXport Processes in the Ocean from Remote Sensing (EXPORTS) science plan is to develop a predictive understanding of the export and fate of global ocean primary production and its implications for the Earth's carbon cycle in present and future climates. NASA's satellite ocean-color data record has revolutionized our understanding of global marine systems. EXPORTS is designed to advance the utility of NASA ocean color assets to predict how changes in ocean primary production will impact the global carbon cycle. EXPORTS will create a predictive understanding of both the export of organic carbon from the euphotic zone and its fate in the underlying "twilight zone" (depths of 500 m or more) where variable fractions of exported organic carbon are respired back to CO2. Ultimately, it is the sequestration of deep organic carbon transport that defines the impact of ocean biota on atmospheric CO2 levels and hence climate. EXPORTS will generate a new, detailed understanding of ocean carbon transport processes and pathways linking upper ocean phytoplankton processes to the export and fate of organic matter in the underlying twilight zone using a combination of field campaigns, remote sensing and numerical modeling. The overarching objective for EXPORTS is to ensure the success of future satellite missions by establishing mechanistic relationships between remotely sensed signals and carbon cycle processes. Through a process-oriented approach, EXPORTS will foster new insights on ocean carbon cycling that will maximize its societal relevance and be a key component in the U.S. investment to understand Earth as an integrated system.

Understanding the influence of climate change on the embodied energy of water supply.

PubMed

Mo, Weiwei; Wang, Haiying; Jacobs, Jennifer M

2016-05-15

The current study aims to advance understandings on how and to what degree climate change will affect the life cycle chemical and energy uses of drinking water supply. A dynamic life cycle assessment was performed to quantify historical monthly operational embodied energy of a selected water supply system located in northeast US. Comprehensive multivariate and regression analyses were then performed to understand the statistical correlation among monthly life cycle energy consumptions, three water quality indicators (UV254, pH, and water temperature), and five climate indicators (monthly mean temperature, monthly mean maximum/minimum temperatures, total precipitation, and total snow fall). Thirdly, a calculation was performed to understand how volumetric and total life cycle energy consumptions will change under two selected IPCC emission scenarios (A2 and B1). It was found that volumetric life cycle energy consumptions are highest in winter months mainly due to the higher uses of natural gas in the case study system, but total monthly life cycle energy consumptions peak in both July and January because of the increasing water demand in summer months. Most of the variations in chemical and energy uses can be interpreted by water quality and climate variations except for the use of soda ash. It was also found that climate change might lead to an average decrease of 3-6% in the volumetric energy use of the case study system by the end of the century. This result combined with conclusions reached by previous climate versus water supply studies indicates that effects of climate change on drinking water supply might be highly dependent on the geographical location and treatment process of individual water supply systems. Copyright © 2016 Elsevier Ltd. All rights reserved.

Nasa's Land Remote Sensing Plans for the 1980's

NASA Technical Reports Server (NTRS)

Higg, H. C.; Butera, K. M.; Settle, M.

1985-01-01

Research since the launch of LANDSAT-1 has been primarily directed to the development of analysis techniques and to the conduct of applications studies designed to address resource information needs in the United States and in many other countries. The current measurement capabilities represented by MSS, TM, and SIR-A and B, coupled with the present level of remote sensing understanding and the state of knowledge in the discipline earth sciences, form the foundation for NASA's Land Processes Program. Science issues to be systematically addressed include: energy balance, hydrologic cycle, biogeochemical cycles, biological productivity, rock cycle, landscape development, geological and botanical associations, and land surface inventory, monitoring, and modeling. A global perspective is required for using remote sensing technology for problem solving or applications context. A successful model for this kind of activity involves joint research with a user entity where the user provides a test site and ground truth and NASA provides the remote sensing techniques to be tested.

Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni

PubMed Central

Siringan, Patcharin; Connerton, Phillippa L.; Cummings, Nicola J.; Connerton, Ian F.

2014-01-01

Members of the genus Campylobacter are frequently responsible for human enteric disease, often through consumption of contaminated poultry products. Bacteriophages are viruses that have the potential to control pathogenic bacteria, but understanding their complex life cycles is key to their successful exploitation. Treatment of Campylobacter jejuni biofilms with bacteriophages led to the discovery that phages had established a relationship with their hosts typical of the carrier state life cycle (CSLC), where bacteria and bacteriophages remain associated in equilibrium. Significant phenotypic changes include improved aerotolerance under nutrient-limited conditions that would confer an advantage to survive in extra-intestinal environments, but a lack in motility eliminated their ability to colonize chickens. Under these circumstances, phages can remain associated with a compatible host and continue to produce free virions to prospect for new hosts. Moreover, we demonstrate that CSLC host bacteria can act as expendable vehicles for the delivery of bacteriophages to new host bacteria within pre-colonized chickens. The CSLC represents an important phase in the ecology of Campylobacter bacteriophage. PMID:24671947

Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni.

PubMed

Siringan, Patcharin; Connerton, Phillippa L; Cummings, Nicola J; Connerton, Ian F

2014-03-26

Members of the genus Campylobacter are frequently responsible for human enteric disease, often through consumption of contaminated poultry products. Bacteriophages are viruses that have the potential to control pathogenic bacteria, but understanding their complex life cycles is key to their successful exploitation. Treatment of Campylobacter jejuni biofilms with bacteriophages led to the discovery that phages had established a relationship with their hosts typical of the carrier state life cycle (CSLC), where bacteria and bacteriophages remain associated in equilibrium. Significant phenotypic changes include improved aerotolerance under nutrient-limited conditions that would confer an advantage to survive in extra-intestinal environments, but a lack in motility eliminated their ability to colonize chickens. Under these circumstances, phages can remain associated with a compatible host and continue to produce free virions to prospect for new hosts. Moreover, we demonstrate that CSLC host bacteria can act as expendable vehicles for the delivery of bacteriophages to new host bacteria within pre-colonized chickens. The CSLC represents an important phase in the ecology of Campylobacter bacteriophage.

A robust and tunable mitotic oscillator in artificial cells

PubMed Central

Wang, Shiyuan; Barnes, Patrick M; Liu, Xuwen; Xu, Haotian; Jin, Minjun; Liu, Allen P

2018-01-01

Single-cell analysis is pivotal to deciphering complex phenomena like heterogeneity, bistability, and asynchronous oscillations, where a population ensemble cannot represent individual behaviors. Bulk cell-free systems, despite having unique advantages of manipulation and characterization of biochemical networks, lack the essential single-cell information to understand a class of out-of-steady-state dynamics including cell cycles. Here, by encapsulating Xenopus egg extracts in water-in-oil microemulsions, we developed artificial cells that are adjustable in sizes and periods, sustain mitotic oscillations for over 30 cycles, and function in forms from the simplest cytoplasmic-only to the more complicated ones involving nuclear dynamics, mimicking real cells. Such innate flexibility and robustness make it key to studying clock properties like tunability and stochasticity. Our results also highlight energy as an important regulator of cell cycles. We demonstrate a simple, powerful, and likely generalizable strategy of integrating strengths of single-cell approaches into conventional in vitro systems to study complex clock functions. PMID:29620527

Characterizing land processes in the biosphere

NASA Technical Reports Server (NTRS)

Erickson, J. D.; Tuyahov, A. J.

1984-01-01

NASA long-term planning for the satellite remote sensing of land areas is discussed from the perspective of a holistic interdisciplinary approach to the study of the biosphere. The earth is characterized as a biogeochemical system; the impact of human activity on this system is considered; and the primary scientific goals for their study are defined. Remote-sensing programs are seen as essential in gaining an improved understanding of energy budgets, the hydrological cycle, other biogeological cycles, and the coupling between these cycles, with the construction of a global data base and eventually the development of predictive simulation models which can be used to assess the impact of planned human activities. Current sensor development at NASA includes a multilinear array for the visible and IR and the L-band Shuttle Imaging Radar B, both to be flown on Shuttle missions in the near future; for the 1990s, a large essentially permanent man-tended interdisciplinary multisensor platform connected to an advanced data network is being planned.

Solder creep-fatigue interactions with flexible leaded parts

NASA Technical Reports Server (NTRS)

Ross, R. G., Jr.; Wen, L. C.; Mon, G. R.; Jetter, E.

1992-01-01

With flexible leaded parts, the solder-joint failure process involves a complex interplay of creep and fatigue mechanisms. To better understand the role of creep in typical multi-hour cyclic loading conditions, a specialized non-linear finite-element creep simulation computer program has been formulated. The numerical algorithm includes the complete part-lead-solder-PWB system, accounting for strain-rate dependence of creep on applied stress and temperature, and the role of the part-lead dimensions and flexibility that determine the total creep deflection (solder strain range) during stress relaxation. The computer program has been used to explore the effects of various solder creep-fatigue parameters such as lead height and stiffness, thermal-cycle test profile, and part/board differential thermal expansion properties. One of the most interesting findings is the strong presence of unidirectional creep-ratcheting that occurs during thermal cycling due to temperature dominated strain-rate effects. To corroborate the solder fatigue model predictions, a number of carefully controlled thermal-cycle tests have been conducted using special bimetallic test boards.

The Global Distribution of Precipitation and Clouds. Chapter 2.4

NASA Technical Reports Server (NTRS)

Shepherd, J. Marshall; Adler, Robert; Huffman, George; Rossow, William; Ritter, Michael; Curtis, Scott

2004-01-01

The water cycle is the key circuit moving water through the Earth's system. This large system, powered by energy from the sun, is a continuous exchange of moisture between the oceans, the atmosphere, and the land. Precipitation (including rain, snow, sleet, freezing rain, and hail), is the primary mechanism for transporting water from the atmosphere back to the Earth's surface and is the key physical process that links aspects of climate, weather, and the global water cycle. Global precipitation and associate cloud processes are critical for understanding the water cycle balance on a global scale and interactions with the Earth's climate system. However, unlike measurement of less dynamic and more homogenous meteorological fields such as pressure or even temperature, accurate assessment of global precipitation is particularly challenging due to its highly stochastic and rapidly changing nature. It is not uncommon to observe a broad spectrum of precipitation rates and distributions over very localized time scales. Furthermore, precipitating systems generally exhibit nonhomogeneous spatial distributions of rain rates over local to global domains.

Urban infrastructure and water management—Science capabilities of the U.S. Geological Survey

USGS Publications Warehouse

Fisher, Shawn C.; Fanelli, Rosemary M.; Selbig, William R.

2016-04-29

Managing the urban-water cycle has increasingly become a challenge for water-resources planners and regulators faced with the problem of providing clean drinking water to urban residents. Sanitary and combined sanitary and storm sewer networks convey wastewater to centralized treatment plants. Impervious surfaces, which include roads, parking lots, and buildings, increase stormwater runoff and the efficiency by which runoff is conveyed to nearby stream channels; therefore, impervious surfaces increase the risk of urban flooding and alteration of natural ecosystems. These challenges will increase with the expansion of urban centers and the probable effects of climate change on precipitation patterns. Understanding the urban-water cycle is critical to effectively manage water resources and to protect people, infrastructure, and urban-stream ecosystems. As a leader in water-supply, wastewater, and stormwater assessments, the U.S. Geological Survey has the expertise and resources needed to monitor, model, and interpret data related to the urban-water cycle and thereby enable water-resources managers to make informed decisions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weisz, Daniel A.; Gross, Michael L.; Pakrasi, Himadri B.

Photosystem II (PSII) is a photosynthetic membrane-protein complex that undergoes an intricate, tightly regulated cycle of assembly, damage, and repair. The available crystal structures of cyanobacterial PSII are an essential foundation for understanding PSII function, but nonetheless provide a snapshot only of the active complex. To study aspects of the entire PSII life-cycle, mass spectrometry (MS) has emerged as a powerful tool that can be used in conjunction with biochemical techniques. In this article, we present the MS-based approaches that are used to study PSII composition, dynamics, and structure, and review the information about the PSII life-cycle that has beenmore » gained by these methods. This information includes the composition of PSII subcomplexes, discovery of accessory PSII proteins, identification of post-translational modifications and quantification of their changes under various conditions, determination of the binding site of proteins not observed in PSII crystal structures, conformational changes that underlie PSII functions, and identification of water and oxygen channels within PSII. Lastly, we conclude with an outlook for the opportunity of future MS contributions to PSII research.« less

An introduction to global carbon cycle management

USGS Publications Warehouse

Sundquist, Eric T.; Ackerman, Katherine V.; Parker, Lauren; Huntzinger, Deborah N.

2009-01-01

Past and current human activities have fundamentally altered the global carbon cycle. Potential future efforts to control atmospheric CO2 will also involve significant changes in the global carbon cycle. Carbon cycle scientists and engineers now face not only the difficulties of recording and understanding past and present changes but also the challenge of providing information and tools for new management strategies that are responsive to societal needs. The challenge is nothing less than managing the global carbon cycle.

Microfluidic Experiments Studying Pore Scale Interactions of Microbes and Geochemistry

NASA Astrophysics Data System (ADS)

Chen, M.; Kocar, B. D.

2016-12-01

Understanding how physical phenomena, chemical reactions, and microbial behavior interact at the pore-scale is crucial to understanding larger scale trends in groundwater chemistry. Recent studies illustrate the utility of microfluidic devices for illuminating pore-scale physical-biogeochemical processes and their control(s) on the cycling of iron, uranium, and other important elements 1-3. These experimental systems are ideal for examining geochemical reactions mediated by microbes, which include processes governed by complex biological phenomenon (e.g. biofilm formation, etc.)4. We present results of microfluidic experiments using a model metal reducing bacteria and varying pore geometries, exploring the limitations of the microorganisms' ability to access tight pore spaces, and examining coupled biogeochemical-physical controls on the cycling of redox sensitive metals. Experimental results will provide an enhanced understanding of coupled physical-biogeochemical processes transpiring at the pore-scale, and will constrain and compliment continuum models used to predict and describe the subsurface cycling of redox-sensitive elements5. 1. Vrionis, H. A. et al. Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site. Appl. Environ. Microbiol. 71, 6308-6318 (2005). 2. Pearce, C. I. et al. Pore-scale characterization of biogeochemical controls on iron and uranium speciation under flow conditions. Environ. Sci. Technol. 46, 7992-8000 (2012). 3. Zhang, C., Liu, C. & Shi, Z. Micromodel investigation of transport effect on the kinetics of reductive dissolution of hematite. Environ. Sci. Technol. 47, 4131-4139 (2013). 4. Ginn, T. R. et al. Processes in microbial transport in the natural subsurface. Adv. Water Resour. 25, 1017-1042 (2002). 5. Scheibe, T. D. et al. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microb. Biotechnol. 2, 274-286 (2009).

[Modeling of carbon cycling in terrestrial ecosystem: a review].

PubMed

Mao, Liuxi; Sun, Yanling; Yan, Xiaodong

2006-11-01

Terrestrial carbon cycling is one of the important issues in global change research, while carbon cycling modeling has become a necessary method and tool in understanding this cycling. This paper reviewed the research progress in terrestrial carbon cycling, with the focus on the basic framework of simulation modeling, two essential models of carbon cycling, and the classes of terrestrial carbon cycling modeling, and analyzed the present situation of terrestrial carbon cycling modeling. It was pointed out that the future research direction could be based on the biophysical modeling of dynamic vegetation, and this modeling could be an important component in the earth system modeling.

Naturalistic drive cycle synthesis for pickup trucks.

PubMed

Liu, Zifan; Ivanco, Andrej; Filipi, Zoran

2015-09-01

Future pick-up trucks are meeting much stricter fuel economy and exhaust emission standards. Design tradeoffs will have to be carefully evaluated to satisfy consumer expectations within the regulatory and cost constraints. Boundary conditions will obviously be critical for decision making: thus, the understanding of how customers are driving in naturalistic settings is indispensable. Federal driving schedules, while critical for certification, do not capture the richness of naturalistic cycles, particularly the aggressive maneuvers that often shape consumer perception of performance. While there are databases with large number of drive cycles, applying all of them directly in the design process is impractical. Therefore, representative drive cycles that capture the essence of the naturalistic driving should be synthesized from naturalistic driving data. Naturalistic drive cycles are firstly categorized by investigating their micro-trip components, defined as driving activities between successive stops. Micro-trips are expected to characterize underlying local traffic conditions, and separate different driving patterns. Next, the transitions from one vehicle state to another vehicle state in each cycle category are captured with Transition Probability Matrix (TPM). Candidate drive cycles can subsequently be synthesized using Markov Chain based on TPMs for each category. Finally, representative synthetic drive cycles are selected through assessment of significant cycle metrics to identify the ones with smallest errors. This paper provides a framework for synthesis of representative drive cycles from naturalistic driving data, which can subsequently be used for efficient optimization of design or control of pick-up truck powertrains. Manufacturers will benefit from representative drive cycles in several aspects, including quick assessments of vehicle performance and energy consumption in simulations, component sizing and design, optimization of control strategies, and vehicle testing under real-world conditions. This is in contrast to using federal certification test cycles, which were never intended to capture pickup truck segment. Copyright © 2015 Elsevier Ltd and National Safety Council. All rights reserved.

Li- and Mn-Rich Cathode Materials: Challenges to Commercialization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Jianming; Myeong, Seungjun; Cho, Woongrae

2016-12-14

The lithium- and manganese-rich (LMR) layered structure cathode exhibit one of the highest specific energy (~900 Wh kg-1) among all the cathode materials. However, the practical applications of LMR cathodes are still hindered by several significant challenges including voltage fade, large initial capacity loss, poor rate capability and limited cycle life. Herein, we review the recent progresses and understandings on the application of LMR cathode materials from practical point of view. Several key parameters of LMR cathodes that affect the LMR/graphite full cell operation are systematically analysed. These factors include the first cycle capacity loss, voltage fade, powder tap density,more » electrode density of LMR based cathode etc. New approaches to minimize the detrimental effect of these factors are highlighted in this work. We also provided the perspectives for the future research on LMR cathode materials, focusing on addressing the fundamental problems of LMR cathodes while always keeping practical considerations in mind.« less

Advances in Global Water Cycle Science Made Possible by Global Precipitation Mission (GPM)

NASA Technical Reports Server (NTRS)

Smith, Eric A.; Starr, David OC. (Technical Monitor)

2001-01-01

Within this decade the internationally sponsored Global Precipitation Mission (GPM) will take an important step in creating a global precipitation observing system from space. One perspective for understanding the nature of GPM is that it will be a hierarchical system of datastreams from very high caliber combined dual frequency radar/passive microwave (PMW) rain-radiometer retrievals, to high caliber PMW rain-radiometer only retrievals, and on to blends of the former datastreams with other less-high caliber PMW-based and IR-based rain retrievals. Within the context of NASA's role in global water cycle science and its own Global Water & Energy Cycle (GWEC) program, GPM is the centerpiece mission for improving our understanding of the global water cycle from a space-based measurement perspective. One of the salient problems within our current understanding of the global water and energy cycle is determining whether a change in the rate of the water cycle is accompanying changes in global temperature. As there are a number of ways in which to define a rate-change of the global water cycle, it is not entirely clear as to what constitutes such a determination, This paper presents an overview of the Global Precipitation Mission and how its datasets can be used in a set of quantitative tests within the framework of the oceanic and continental water budget equations to determine comprehensively whether substantive rate changes do accompany perturbations in global temperatures and how such rate changes manifest themselves in both water storage and water flux transport processes.

Measurements of the Solar Spectral Irradiance Variability over Solar Cycles 21 to 24

NASA Astrophysics Data System (ADS)

Woods, T. N.

2017-12-01

The solar irradiance is the primary natural energy input into Earth's atmosphere and climate system. Understanding the long-term variations of the solar spectral irradiance (SSI) over time scales of the 11-year solar activity cycle and longer is critical for most Sun-climate research topics. There are satellite measurements of the SSI since the 1970s that contribute to understanding the solar cycle variability over Solar Cycles 21 to 24. A limiting factor for the accuracy of these results is the uncertainties for the instrument degradation corrections, for which there are fairly large corrections relative to the amount of solar cycle variability at some wavelengths. A summary of these satellite SSI measurements, which are primarily in the ultraviolet and only recently in the visible and near infrared, will be presented. Examining SSI trends using a new analysis technique is helping to identify some uncorrected instrumental trends, which once applied to the SSI trends has the potential to provide more accurate solar cycle variability results. This new technique examines the SSI trends at different levels of solar activity to provide long-term trends in a SSI record, and one of the most common components of these derived long-term trends is a downward trend that we attribute to being most likely from uncorrected instrument degradation. Examples of this analysis will be presented for some of the satellite SSI measurements to demonstrate this new technique and how it has potential to improve the understanding of solar cycle variability and to clarify the uncertainties of the trends.

Human exposure to aluminium.

PubMed

Exley, Christopher

2013-10-01

Human activities have circumvented the efficient geochemical cycling of aluminium within the lithosphere and therewith opened a door, which was previously only ajar, onto the biotic cycle to instigate and promote the accumulation of aluminium in biota and especially humans. Neither these relatively recent activities nor the entry of aluminium into the living cycle are showing any signs of abating and it is thus now imperative that we understand as fully as possible how humans are exposed to aluminium and the future consequences of a burgeoning exposure and body burden. The aluminium age is upon us and there is now an urgent need to understand how to live safely and effectively with aluminium.

Why Be Temperate: Lessons from Bacteriophage λ.

PubMed

Gandon, Sylvain

2016-05-01

Many pathogens have evolved the ability to induce latent infections of their hosts. The bacteriophage λ is a classical model for exploring the regulation and the evolution of latency. Here, I review recent experimental studies on phage λ that identify specific conditions promoting the evolution of lysogenic life cycles. In addition, I present specific adaptations of phage λ that allow this virus to react plastically to variations in the environment and to reactivate its lytic life cycle. All of these different examples are discussed in the light of evolutionary epidemiology theory to disentangle the different evolutionary forces acting on temperate phages. Understanding phage λ adaptations yield important insights into the evolution of latency in other microbes, including several life-threatening human pathogens. Copyright © 2016 Elsevier Ltd. All rights reserved.

Multifunctional Nature of the Arenavirus RING Finger Protein Z

PubMed Central

Fehling, Sarah Katharina; Lennartz, Frank; Strecker, Thomas

2012-01-01

Arenaviruses are a family of enveloped negative-stranded RNA viruses that can cause severe human disease ranging from encephalitis symptoms to fulminant hemorrhagic fever. The bi‑segmented RNA genome encodes four polypeptides: the nucleoprotein NP, the surface glycoprotein GP, the polymerase L, and the RING finger protein Z. Although it is the smallest arenavirus protein with a length of 90 to 99 amino acids and a molecular weight of approx. 11 kDa, the Z protein has multiple functions in the viral life cycle including (i) regulation of viral RNA synthesis, (ii) orchestration of viral assembly and budding, (iii) interaction with host cell proteins, and (iv) interferon antagonism. In this review, we summarize our current understanding of the structural and functional role of the Z protein in the arenavirus replication cycle. PMID:23202512

Chimera states in multi-strain epidemic models with temporary immunity

NASA Astrophysics Data System (ADS)

Bauer, Larissa; Bassett, Jason; Hövel, Philipp; Kyrychko, Yuliya N.; Blyuss, Konstantin B.

2017-11-01

We investigate a time-delayed epidemic model for multi-strain diseases with temporary immunity. In the absence of cross-immunity between strains, dynamics of each individual strain exhibit emergence and annihilation of limit cycles due to a Hopf bifurcation of the endemic equilibrium, and a saddle-node bifurcation of limit cycles depending on the time delay associated with duration of temporary immunity. Effects of all-to-all and non-local coupling topologies are systematically investigated by means of numerical simulations, and they suggest that cross-immunity is able to induce a diverse range of complex dynamical behaviors and synchronization patterns, including discrete traveling waves, solitary states, and amplitude chimeras. Interestingly, chimera states are observed for narrower cross-immunity kernels, which can have profound implications for understanding the dynamics of multi-strain diseases.

Flutter, Postflutter, and Control of a Supersonic Wing Section

NASA Technical Reports Server (NTRS)

Marzocca, Piergiovanni; Librescu, Liviu; Silva, Walter A.

2002-01-01

A number of issues related to the flutter and postflutter of two-dimensional supersonic lifting surfaces are addressed. Among them there are the 1) investigation of the implications of the nonlinear unsteady aerodynamics and structural nonlinearities on the stable/unstable character of the limit cycle and 2) study of the implications of the incorporation of a control capability on both the flutter boundary and the postflutter behavior. To this end, a powerful methodology based on the Lyapunov first quantity is implemented. Such a treatment of the problem enables one to get a better understanding of the various factors involved in the nonlinear aeroelastic problem, including the stable and unstable limit cycle. In addition, it constitutes a first step toward a more general investigation of nonlinear aeroelastic phenomena of three-dimensional lifting surfaces.

MicroRNA inhibition fine-tunes and provides robustness to the restriction point switch of the cell cycle.

PubMed

Del Rosario, Ricardo C H; Damasco, Joseph Ray Clarence G; Aguda, Baltazar D

2016-09-09

The restriction point marks a switch in G1 from growth factor-dependent to growth factor-independent progression of the cell cycle. The proper regulation of this switch is important for normal cell processes; aberrations could result in a number of diseases such as cancer, neurodegenerative disorders, stroke and myocardial infarction. To further understand the regulation of the restriction point, we extended a mathematical model of the Rb-E2F pathway to include members of the microRNA cluster miR-17-92. Our mathematical analysis shows that microRNAs play an essential role in fine-tuning and providing robustness to the switch. We also demonstrate how microRNA regulation can steer cells in or out of cancer states.

MicroRNA inhibition fine-tunes and provides robustness to the restriction point switch of the cell cycle

PubMed Central

del Rosario, Ricardo C. H.; Damasco, Joseph Ray Clarence G.; Aguda, Baltazar D.

2016-01-01

The restriction point marks a switch in G1 from growth factor-dependent to growth factor-independent progression of the cell cycle. The proper regulation of this switch is important for normal cell processes; aberrations could result in a number of diseases such as cancer, neurodegenerative disorders, stroke and myocardial infarction. To further understand the regulation of the restriction point, we extended a mathematical model of the Rb-E2F pathway to include members of the microRNA cluster miR-17-92. Our mathematical analysis shows that microRNAs play an essential role in fine-tuning and providing robustness to the switch. We also demonstrate how microRNA regulation can steer cells in or out of cancer states. PMID:27610602

NASA's mission to planet Earth: Earth observing system

NASA Technical Reports Server (NTRS)

1993-01-01

The topics covered include the following: global climate change; radiation, clouds, and atmospheric water; the ocean; the troposphere - greenhouse gases; land cover and the water cycle; polar ice sheets and sea level; the stratosphere - ozone chemistry; volcanoes; the Earth Observing System (EOS) - how NASA will support studies of global climate change?; research and assessment - EOS Science Investigations; EOS Data and Information System (EOSDIS); EOS observations - instruments and spacecraft; a national international effort; and understanding the Earth System.

Shear-induced chaos

NASA Astrophysics Data System (ADS)

Lin, Kevin K.; Young, Lai-Sang

2008-05-01

Guided by a geometric understanding developed in earlier works of Wang and Young, we carry out numerical studies of shear-induced chaos in several parallel but different situations. The settings considered include periodic kicking of limit cycles, random kicks at Poisson times and continuous-time driving by white noise. The forcing of a quasi-periodic model describing two coupled oscillators is also investigated. In all cases, positive Lyapunov exponents are found in suitable parameter ranges when the forcing is suitably directed.

The Impact of Nitrogen Limitation and Mycorrhizal Symbiosis on Aspen Tree Growth and Development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tran, Bich Thi Ngoc

Nitrogen deficiency is the most common and widespread nutritional deficiency affecting plants worldwide. Ectromycorrhizal symbiosis involves the beneficial interaction of plants with soil fungi and plays a critical role in nutrient cycling, including the uptake of nitrogen from the environment. The main goal of this study is to understand how limiting nitrogen in the presence or absence of an ectomycorrhizal fungi, Laccaria bicolor, affects the health of aspen trees, Populus temuloides.

Youth Baseball Pitching Mechanics: A Systematic Review.

PubMed

Thompson, Samuel F; Guess, Trent M; Plackis, Andreas C; Sherman, Seth L; Gray, Aaron D

Pitching injuries in youth baseball are increasing in incidence. Poor pitching mechanics in young throwers have not been sufficiently evaluated due to the lack of a basic biomechanical understanding of the "normal" youth pitching motion. To provide a greater understanding of the kinetics and kinematics of the youth baseball pitching motion. PubMed, MEDLINE, and SPORTDiscus databases were searched from database inception through February 2017. A total of 10 biomechanical studies describing youth pitching mechanics were included. Systematic review. Level 3. Manual extraction and compilation of demographic, methodology, kinetic, and kinematic variables from the included studies were completed. In studies of healthy youth baseball pitchers, progressive external rotation of the shoulder occurs throughout the start of the pitching motion, reaching a maximum of 166° to 178.2°, before internally rotating throughout the remainder of the cycle, reaching a minimum of 13.2° to 17°. Elbow valgus torque reaches the highest level (18 ± 4 N·m) just prior to maximum shoulder external rotation and decreases throughout the remainder of the pitch cycle. Stride length is 66% to 85% of pitcher height. In comparison with a fastball, a curveball demonstrates less elbow varus torque (31.6 ± 15.3 vs 34.8 ± 15.4 N·m). Multiple studies show that maximum elbow valgus torque occurs just prior to maximum shoulder external rotation. Forces on the elbow and shoulder are greater for the fastball than the curveball.

Fundamental Investigation of Silicon Anode in Lithium-Ion Cells

NASA Technical Reports Server (NTRS)

Wu, James J.; Bennett, William R.

2012-01-01

Silicon is a promising and attractive anode material to replace graphite for high capacity lithium ion cells since its theoretical capacity is 10 times of graphite and it is an abundant element on Earth. However, there are challenges associated with using silicon as Li-ion anode due to the significant first cycle irreversible capacity loss and subsequent rapid capacity fade during cycling. Understanding solid electrolyte interphase (SEI) formation along with the lithium ion insertion/de-insertion kinetics in silicon anodes will provide greater insight into overcoming these issues, thereby lead to better cycle performance. In this paper, cyclic voltammetry and electrochemical impedance spectroscopy are used to build a fundamental understanding of silicon anodes. The results show that it is difficult to form the SEI film on the surface of a Si anode during the first cycle; the lithium ion insertion and de-insertion kinetics for Si are sluggish, and the cell internal resistance changes with the state of lithiation after electrochemical cycling. These results are compared with those for extensively studied graphite anodes. The understanding gained from this study will help to design better Si anodes, and the combination of cyclic voltammetry with impedance spectroscopy provides a useful tool to evaluate the effectiveness of the design modifications on the Si anode performance.

An updated view of global water cycling

NASA Astrophysics Data System (ADS)

Houser, P. R.; Schlosser, A.; Lehr, J.

2009-04-01

Unprecedented new observation capacities combined with revolutions in modeling, we are poised to make huge advances in water cycle assessment, understanding, and prediction. To realize this goal, we must develop a discipline of prediction and verification through the integration of water and energy cycle observations and models, and to verify model predictions against observed phenomena to ensure that research delivers reliable improvements in prediction skill. Accomplishing these goals will require, in part, an accurate accounting of the key reservoirs and fluxes associated with the global water and energy cycle, including their spatial and temporal variability, through integration of all necessary observations and research tools. A brief history of the lineage of the conventional water balance and a summary accounting of all major parameters of the water balance using highly respected secondary sources will be presented. Principally, recently published peer reviewed papers reporting results of original work involving direct measurements and new data generated by high-tech devices (e.g. satellite / airborne instruments, supercomputers, geophysical tools) will be employed. This work lends credence to the conventional water balance ideas, but also reveals anachronistic scientific concepts/models, questionable underlying data, longstanding oversights and outright errors in the water balance.

Aerosol chemistry in GLOBE

NASA Technical Reports Server (NTRS)

Clarke, Antony D.; Rothermel, Jeffry; Jarzembski, Maurice A.

1993-01-01

This task addresses the measurement and understanding of the physical and chemical properties of aerosol in remote regions that are responsible for aerosol backscatter at infrared wavelengths. Because it is representative of other clean areas, the remote Pacific is of extreme interest. Emphasis is on the determination size dependent aerosol properties that are required for modeling backscatter at various wavelengths and upon those features that may be used to help understand the nature, origin, cycling and climatology of these aerosols in the remote troposphere. Empirical relationships will be established between lidar measurements and backscatter derived from the aerosol microphysics as required by the NASA Doppler Lidar Program. This will include the analysis of results from the NASA GLOBE Survey Mission Flight Program. Additional instrument development and deployment will be carried out in order to extend and refine this data base. Identified activities include participation in groundbased and airborne experiments. Progress to date includes participation in, analysis of, and publication of results from Mauna Loa Backscatter Intercomparison Experiment (MABIE) and Global Backscatter Experiment (GLOBE).

Growth and collapse of a resource system: an adaptive cycle of change in public lands governance and forest management in Alaska

Treesearch

Colin M. Beier; Amy Lauren Lovecraft; F. Stuart Chapin

2009-01-01

Large-scale government efforts to develop resources for societal benefit have often experienced cycles of growth and decline that leave behind difficult social and ecological legacies. To understand the origins and outcomes of these failures of resource governance, scholars have applied the framework of the adaptive cycle. In this study, we used the adaptive cycle as a...

Introductory Business Textbook Revision Cycles: Are They Getting Shorter?

ERIC Educational Resources Information Center

Zinser, Brian; Brunswick, Gary

2010-01-01

The rate of textbook revision cycles is examined in light of the recent trend towards more rapid revisions (and adoptions of textbooks). The authors conduct background research to better understand the context for textbook revision cycles and the environmental forces that have been influencing what appears to be more rapid textbook revisions. A…

A Simple Model to Teach Business Cycle Macroeconomics for Emerging Market and Developing Economies

ERIC Educational Resources Information Center

Duncan, Roberto

2015-01-01

The canonical neoclassical model is insufficient to understand business cycle fluctuations in emerging market and developing economies. The author reformulates the model proposed by Aguiar and Gopinath (2007) in a simple setting that can be used to teach business cycle macroeconomics for emerging market and developing economies at the…

Consequences of climate change for biogeochemical cycling in forests of northeastern North America

Treesearch

John L. Campbell; Lindsey E. Rustad; Elizabeth W. Boyer; Sheila F. Christopher; Charles T. Driscoll; Ivan .J. Fernandez; Peter M. Groffman; Daniel Houle; Jana Kiekbusch; Alison H. Magill; Myron J. Mitchell; Scott V. Ollinger

2009-01-01

A critical component of assessing the impacts of climate change on forest ecosystems involves understanding associated changes in biogeochemical cycling of elements. Evidence from research on northeastern North American forests shows that direct effects of climate change will evoke changes in biogeochemical cycling by altering plant physiology forest productivity, and...

An Intensified Arctic Water Cycle? Trend Analysis of the Arctic System Freshwater Cycle: Observations and Expectations

NASA Astrophysics Data System (ADS)

Rawlins, M. A.; Adam, J. C.; Vorosmarty, C. J.; Serreze, M. C.; Hinzman, L. D.; Holland, M.; Shiklomanov, A.

2007-12-01

It is expected that a warming climate will be attended by an intensification of the global hydrological cycle. While there are signs of positive trends in several hydrological quantities emerging at the global scale, the scope, character, and quantitative significance of these changes are not well established. In particular, long-term increases in river discharge across Arctic Eurasia are assumed to represent such an intensification and have received considerable attention. Yet, no change in long-term annual precipitation across the region can be related with the discharge trend. Given linkages and feedbacks between the arctic and global climate systems, a more complete understanding of observed changes across northern high latitudes is needed. We present a working definition of an accelerated or intensified hydrological cycle and a synthesis of long-term (nominally 50 years) trends in observed freshwater stocks and fluxes across the arctic land-atmosphere-ocean system. Trend and significance measures from observed data are described alongside expectations of intensification based on GCM simulations of contemporary and future climate. Our domain of interest includes the terrestrial arctic drainage (including all of Alaska and drainage to Hudson Bay), the Arctic Ocean, and the atmosphere over the land and ocean domains. For the terrestrial Arctic, time series of spatial averages which are derived from station data and atmospheric reanalysis are available. Reconstructed data sets are used for quantities such as Arctic Ocean ice and liquid freshwater transports. Study goals include a comprehensive survey of past changes in freshwater across the pan-arctic and a set of benchmarks for expected changes based on an ensemble of GCM simulations, and identification of potential mechanistic linkages which may be examined with contemporary remote sensing data sets.

Perspectives: parity--prelude to a fifth cycle of reform.

PubMed

Goldman, Howard H

2002-09-01

Based on 2000 Carl Taube Lecture at the NIMH Mental Health Economics Meeting. This perspective article examines the relationship between a policy of parity in financing mental health services and the future of reform in service delivery. Applying theories of static and dynamic efficiency to an understanding of parity and the evolution of mental health services, drawing upon Burton Weisbrod s concept of the health care quadrilemma . Each of four cycles of reform in mental health services have contended with issues of static and dynamic efficiency. Each cycle was associated with static efficiency in the management and financing of services, and each was associated with a set of new treatment technologies intended to improve dynamic efficiency. Each reform proved ultimately unsuccessful primarily because of the failure of the treatment technologies to prevent future patient chronicity or to achieve sustained recovery. Recent advances in treatment technology and management of care can permit an unprecedented level of efficiency consistent with a policy of improved access to mainstream health and social welfare resources, including insurance coverage. This policy of so-called financing parity can improve current mental health service delivery, but it may also portend a future fifth cycle of reform. If new technologies continue to advance as full technologies - simple to deliver and producing true recovery - and mainstream resources are made available, then the specialty mental health services may contract dramatically in favor of effective care and treatment of mental illness in primary care and other mainstream settings. Predicting the future of health care is speculative, but it may be easier using the Weisbrod formulation to understand the process of mental health reform. Over-reliance on administrative techniques for building static efficiency and false optimism about dynamic efficiency from new technology have stymied previous reforms. All the same, a fifth cycle of reform could succeed, if the right conditions are met and mainstream resources are available.

Understanding The Behavior Of The Sun'S Large Scale Magnetic Field And Its Relation With The Meridional Flow

NASA Astrophysics Data System (ADS)

Hazra, Gopal

2018-02-01

In this thesis, various studies leading to better understanding of the 11-year solar cycle and its theoretical modeling with the flux transport dynamo model are performed. Although this is primarily a theoretical thesis, there is a part dealing with the analysis of observational data. The various proxies of solar activity (e.g., sunspot number, sunspot area and 10.7 cm radio flux) from various observatory including the sunspot area records of Kodaikanal Observatory have been analyzed to study the irregular aspects of solar cycles and an analysis has been carried out on the correlation between the decay rate and the next cycle amplitude. The theoretical analysis starts with explaining how the magnetic buoyancy has been treated in the flux transport dynamo models, and advantages and disadvantages of different treatments. It is found that some of the irregular properties of the solar cycle in the decaying phase can only be well explained using a particular treatment of the magnetic buoyancy. Next, the behavior of the dynamo with the different spatial structures of the meridional flow based on recent helioseismology results has been studied. A theoretical model is constructed considering the back reaction due to the Lorentz force on the meridional flows which explains the observed variation of the meridional flow with the solar cycle. Finally, some results with 3D FTD models are presented. This 3D model is developed to handle the Babcock-Leighton mechanism and magnetic buoyancy more realistically than previous 2D models and can capture some important effects connected with the subduction of the magnetic field in polar regions, which are missed in 2D surface flux transport models. This 3D model is further used to study the evolution of the magnetic fields due to a turbulent non-axisymmetric velocity field and to compare the results with the results obtained by using a simple turbulent diffusivity coefficient.

NASA Human Spaceflight Scenarios - Do All Our Models Still Say No?

NASA Technical Reports Server (NTRS)

Zapata, Edgar

2017-01-01

Historically, NASA human spaceflight planning has included healthy doses of life cycle cost analysis. Planners put projects and their cost estimates in a budget context. Estimated costs became expected budgets. Regardless, real budgets rarely matched expectations. So plans would come and go as NASA canceled projects. New projects would arise and the cycle would begin again. Repeatedly, NASA schedule and performance ambitions come up against costs growing at double-digit rates while budgets barely rise a couple of percent a year. Significant skepticism greets proposed NASA programs at birth, as cost estimates for new projects are traditionally very high, and worse, far off the mark for those carried forward. In this environment the current "capability driven framework" for NASA human spaceflight evolved, where long term life cycle cost analysis are even viewed as possibly counter-productive. Here, a space exploration project, for example the Space Launch System, focuses on immediate goals. A life cycle is that of a project, not a program, and for only that span of time to a near term milestone like a first test launch. Unfortunately, attempting to avoid some pitfalls in long-term life cycle cost analysis breeds others. Government audits have noted that limiting the scope of cost analysis "does not provide the transparency necessary to assess long-term affordability" making it difficult to understand if NASA "is progressing in a cost-effective and affordable manner." Even in this short-term framework, NASA realizes the importance of long-term considerations, that it must "maximize the efficiency and sustainability of the Exploration Systems development programs", that this is "critical to free resources for re-investment...such as other required deep space exploration capabilities." Assuming the value of long-term life cycle cost analysis, where due diligence meets reconnaissance, and accepting past shortcomings, the work here approaches life cycle cost analysis for human spaceflight differently. 1) If costs have traditionally been so high that adding them up is discouraging, are there any new facts on the ground offering paths to significantly lower costs? 2) If NASA's spaceflight budget and process is an over-arching constraint, with its planning limitations favoring short-term outlooks, is there a way to step outside the budget box? 3) If life cycle answers have historically been too uncertain to be useful, is there a process where stakeholders gain valuable insights merely from emphasizing a common understanding around questions? We analyze the potential life cycle cost of assorted NASA human spaceflight architectures - an architecture as a sum of individual systems, working together. With the prior questions of high costs, limited budgets and uncertainties in mind, public private partnerships are central in these architectures. The cost data for current commercial public private partnerships is encouraging, as are cost estimates for future partnership approaches beyond low Earth orbit. Private capital, directly or indirectly, an ingredient of public private partnerships, may be a significant factor in finding a path around the limits of the NASA spaceflight budget. Also, understanding and reviewing the pros, cons and uncertainties of assorted architectures can assist in developing a common understanding around key questions as important if not more so than the numbers and answers. Lastly, a scenario planning technique is briefly explored that can mature a common understanding about the agencies situation at hand and how diverse stakeholders can go forward together. Scenario planning, rather than focusing on answers, places emphasis on stakeholders developing a common understanding about the future. Putting aside costs, this is especially true of questions about sustainability and growth, results, benefits and expectations. While efficiency exercises or analysis look to reduce resources in one place to apply them elsewhere, moving around slices in a pie, scenario planning can get at the heart of the matter, growing the pie, transforming it, and making the pieces relevant. Especially important is the question of sustainability for different scenarios in the broad sense of the word - not just the narrow ability to survive or continue, but also the ability to adapt, prosper and grow.

Nitrogen Cycling In Latin America and : Drivers, Impacts And Vulnerabilities

NASA Astrophysics Data System (ADS)

Ometto, J. P.; Bustamante, M.; Forti, M. C.; Peres, T.; Stein, A. F.; Jaramillo, V.; Perez, C.; Pinho, P. F.; Ascarrunz, N.; Austin, A.; Martinelli, L. A.

2015-12-01

Latin America is at a crossroads where a balance should be found between production of the major agricultural commodities, reasonable and planned urbanization and conservation of its natural ecosystems and associated goods and services. Most of the natural biological fixation of the globe occurs in forests of Latin America. On the other hand, Latin America has one of the highest rate of deforestation in the world, and one of the highest increases in the use of nitrogen fertilizers. A better understanding of the responses of the N cycle to human impacts will allow better conservation of biodiversity and natural resources, with an improvement in food security and more effective land use choices in biofuel development. Latin America is a unique region in multiple aspects, and particularly relevant for this proposal are the broad climatic gradient and economic patterns that include a diverse range of natural ecosystems and socio-economic development pathways. Additionally, the region is impaired by the lack of information on actual impacts of human activity on N cycling across this diverse range of ecosystems. Finally, the large expanse of tropical ecosystems and reservoirs of biodiversity juxtaposed with an intense economic incentive for development make our understanding of human impacts in this context particularly important for global change research in the region. An evaluation of current and predicted changes in climate and land use on nitrogen stocks and fluxes in the region what is being develop by the Nnet network (Nitrogen Cycling In Latin America: Drivers, Impacts And Vulnerabilities ). This presentation will bring the latest results of this integrative initiative in Latin America, focusing on the nitrogen budget associated to provision of ecosystem services and climate change.

Single-Cell Analysis of the Impact of Host Cell Heterogeneity on Infection with Foot-and-Mouth Disease Virus.

PubMed

Xin, Xiu; Wang, Hailong; Han, Lingling; Wang, Mingzhen; Fang, Hui; Hao, Yao; Li, Jiadai; Zhang, Hu; Zheng, Congyi; Shen, Chao

2018-05-01

Viral infection and replication are affected by host cell heterogeneity, but the mechanisms underlying the effects remain unclear. Using single-cell analysis, we investigated the effects of host cell heterogeneity, including cell size, inclusion, and cell cycle, on foot-and-mouth disease virus (FMDV) infection (acute and persistent infections) and replication. We detected various viral genome replication levels in FMDV-infected cells. Large cells and cells with a high number of inclusions generated more viral RNA copies and viral protein and a higher proportion of infectious cells than other cells. Additionally, we found that the viral titer was 10- to 100-fold higher in cells in G 2 /M than those in other cell cycle phases and identified a strong correlation between cell size, inclusion, and cell cycle heterogeneity, which all affected the infection and replication of FMDV. Furthermore, we demonstrated that host cell heterogeneity influenced the adsorption of FMDV due to differences in the levels of FMDV integrin receptors expression. Collectively, these results further our understanding of the evolution of a virus in a single host cell. IMPORTANCE It is important to understand how host cell heterogeneity affects viral infection and replication. Using single-cell analysis, we found that viral genome replication levels exhibited dramatic variability in foot-and-mouth disease virus (FMDV)-infected cells. We also found a strong correlation between heterogeneity in cell size, inclusion number, and cell cycle status and that all of these characteristics affect the infection and replication of FMDV. Moreover, we found that host cell heterogeneity influenced the viral adsorption as differences in the levels of FMDV integrin receptors' expression. This study provided new ideas for the studies of correlation between FMDV infection mechanisms and host cells. Copyright © 2018 American Society for Microbiology.

Plutonium: Advancing our Understanding to Support Sustainable Nuclear Fuel Cycles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lines, Amanda M.; Adami, Susan R.; Casella, Amanda

With Global energy needs increasing, real energy solutions to meet demands now, are needed. Fossil fuels are not an ideal candidate to meet these needs because of their negative impact on the environment. Renewables such as wind and solar have huge potential, but still need major technological advancements (particularly in the area of battery storage) before they can effectively meet growing world needs. The best option for meeting large energy needs without a large carbon footprint is nuclear energy. Of course, nuclear energy can face a fair amount of opposition and concern. However, through modern engineering and science many ofmore » these concerns can now be addressed. Many safety concerns can be met by engineering advancements, but perhaps the biggest area of concern is what to do with the used nuclear fuel after it is removed from the reactor. Currently the United States (and several other countries) utilize an open fuel cycle, meaning fuel is only used once and then discarded. It should be noted that fuel coming out of a reactor has utilized approximately 1% of the total energy that could be produced by the uranium in the fuel rod. The answer here is to close the fuel cycle and recycle the nuclear materials. By reprocessing used nuclear fuel, all the U can be repurposed without requiring disposal. The various fission products can be removed and either discarded (hugely reduced waste volume) or more reasonably, utilized in specialty reactors to make more energy or needed research/medical isotopes. While reprocessing technology is currently advanced enough to meet energy needs, completing research to improve and better understand these techniques is still needed. Better understanding behavior of fission products is one area of important research. Despite it being discovered over 75 years ago, plutonium is still an exciting element to study because of the complex solution chemistry it exhibits. In aqueous solutions Pu can exist simultaneously in multiple oxidation states, including 3+, 4+, and 6+. It also readily forms a variety of metal-ligand complexes depending on solution pH and available ligands. Understanding of the behavior of Pu in solution remains an important area of research today, with relevance to developing sustainable nuclear fuel cycles, minimizing its impact on the environment, and detecting and preventing the spread of nuclear weapons technology.« less

Copula Multivariate analysis of Gross primary production and its hydro-environmental driver; A BIOME-BGC model applied to the Antisana páramos

NASA Astrophysics Data System (ADS)

Minaya, Veronica; Corzo, Gerald; van der Kwast, Johannes; Galarraga, Remigio; Mynett, Arthur

2014-05-01

Simulations of carbon cycling are prone to uncertainties from different sources, which in general are related to input data, parameters and the model representation capacities itself. The gross carbon uptake in the cycle is represented by the gross primary production (GPP), which deals with the spatio-temporal variability of the precipitation and the soil moisture dynamics. This variability associated with uncertainty of the parameters can be modelled by multivariate probabilistic distributions. Our study presents a novel methodology that uses multivariate Copulas analysis to assess the GPP. Multi-species and elevations variables are included in a first scenario of the analysis. Hydro-meteorological conditions that might generate a change in the next 50 or more years are included in a second scenario of this analysis. The biogeochemical model BIOME-BGC was applied in the Ecuadorian Andean region in elevations greater than 4000 masl with the presence of typical vegetation of páramo. The change of GPP over time is crucial for climate scenarios of the carbon cycling in this type of ecosystem. The results help to improve our understanding of the ecosystem function and clarify the dynamics and the relationship with the change of climate variables. Keywords: multivariate analysis, Copula, BIOME-BGC, NPP, páramos

Water conservation implications for decarbonizing non-electric energy supply: A hybrid life-cycle analysis.

PubMed

Liu, Shiyuan; Wang, Can; Shi, Lei; Cai, Wenjia; Zhang, Lixiao

2018-08-01

Low-carbon transition in the non-electric energy sector, which includes transport and heating energy, is necessary for achieving the 2 °C target. Meanwhile, as non-electric energy accounts for over 60% of total water consumption in the energy supply sector, it is vital to understand future water trends in the context of decarbonization. However, few studies have focused on life-cycle water impacts for non-electric energy; besides, applying conventional LCA methodology to assess non-electric energy has limitations. In this paper, a Multi-Regional Hybrid Life-Cycle Assessment (MRHLCA) model is built to assess total CO 2 emissions and water consumption of 6 non-electric energy technologies - transport energy from biofuel and gasoline, heat supply from natural gas, biogas, coal, and residual biomass, within 7 major emitting economies. We find that a shift to natural gas and residual biomass heating can help economies reduce 14-65% CO 2 and save more than 21% water. However, developed and developing economies should take differentiated technical strategies. Then we apply scenarios from IMAGE model to demonstrate that if economies take cost-effective 2 °C pathways, the water conservation synergy for the whole energy supply sector, including electricity, can also be achieved. Copyright © 2018 Elsevier Ltd. All rights reserved.

ForC: a global database of forest carbon stocks and fluxes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson-Teixeira, Kristina J.; Wang, Maria M. H.; McGarvey, Jennifer C.

Forests play an influential role in the global carbon (C) cycle, storing roughly half of terrestrial C and annually exchanging with the atmosphere more than ten times the carbon dioxide (CO 2) emitted by anthropogenic activities. Yet, scaling up from ground-based measurements of forest C stocks and fluxes to understand global scale C cycling and its climate sensitivity remains an important challenge. Tens of thousands of forest C measurements have been made, but these data have yet to be integrated into a single database that makes them accessible for integrated analyses. Here we present an open-access global Forest Carbon databasemore » (ForC) containing records of ground-based measurements of ecosystem-level C stocks and annual fluxes, along with disturbance history and methodological information. ForC expands upon the previously published tropical portion of this database, TropForC (DOI: 10.5061/dryad.t516f), now including 17,538 records (previously 3568) representing 2,731 plots (previously 845) in 826 geographically distinct areas (previously 178). The database covers all forested biogeographic and climate zones, represents forest stands of all ages, and includes 89 C cycle variables collected between 1934 and 2015. We expect that ForC will prove useful for macroecological analyses of forest C cycling, for evaluation of model predictions or remote sensing products, for quantifying the contribution of forests to the global C cycle, and for supporting international efforts to inventory forest carbon and greenhouse gas exchange. A dynamic version of ForC-db is maintained at https://github.com/forc-db, and we encourage the research community to collaborate in updating, correcting, expanding, and utilizing this database.« less

Thousands of Viral Populations Recovered from Peatland Soil Metagenomes Reveal Viral Impacts on Carbon Cycling in Thawing Permafrost

NASA Astrophysics Data System (ADS)

Emerson, J. B.; Brum, J. R.; Roux, S.; Bolduc, B.; Woodcroft, B. J.; Singleton, C. M.; Boyd, J. A.; Hodgkins, S. B.; Wilson, R.; Trubl, G. G.; Jang, H. B.; Crill, P. M.; Chanton, J.; Saleska, S. R.; Rich, V. I.; Tyson, G. W.; Sullivan, M. B.

2016-12-01

Methane and carbon dioxide emissions, which are under significant microbial control, provide positive feedbacks to climate change in thawing permafrost peatlands. Although viruses in marine systems have been shown to impact microbial ecology and biogeochemical cycling through host cell lysis, horizontal gene transfer, and auxiliary metabolic gene expression, viral ecology in permafrost and other soils remains virtually unstudied due to methodological challenges. Here, we identified viral sequences in 208 assembled bulk soil metagenomes derived from a permafrost thaw gradient in Stordalen Mire, northern Sweden, from 2010-2012. 2,048 viral populations were recovered, which genome- and network-based classification revealed to be largely novel, increasing known viral genera globally by 40%. Ecologically, viral communities differed significantly across the thaw gradient and by soil depth. Co-occurring microbial community composition, soil moisture, and pH were predictors of viral community composition, indicative of biological and biogeochemical feedbacks as permafrost thaws. Host prediction—achieved through clustered regularly interspaced short palindromic repeats (CRISPRs), tetranucleotide frequency patterns, and other sequence similarities to binned microbial population genomes—was able to link 38% of the viral populations to a microbial host. 5% of the implicated hosts were archaea, predominantly methanogens and ammonia-oxidizing Nitrososphaera, 45% were Acidobacteria or Verrucomicrobia (mostly predicted heterotrophic complex carbon degraders), and 21% were Proteobacteria, including methane oxidizers. Recovered viral genome fragments also contained auxiliary metabolic genes involved in carbon and nitrogen cycling. Together, these data reveal multiple levels of previously unknown viral contributions to biogeochemical cycling, including to carbon gas emissions, in peatland soils undergoing and contributing to climate change. This work represents a significant step towards understanding viral roles in microbially-mediated biogeochemical cycling in soil.

Seasonality in ocean microbial communities.

PubMed

Giovannoni, Stephen J; Vergin, Kevin L

2012-02-10

Ocean warming occurs every year in seasonal cycles that can help us to understand long-term responses of plankton to climate change. Rhythmic seasonal patterns of microbial community turnover are revealed when high-resolution measurements of microbial plankton diversity are applied to samples collected in lengthy time series. Seasonal cycles in microbial plankton are complex, but the expansion of fixed ocean stations monitoring long-term change and the development of automated instrumentation are providing the time-series data needed to understand how these cycles vary across broad geographical scales. By accumulating data and using predictive modeling, we gain insights into changes that will occur as the ocean surface continues to warm and as the extent and duration of ocean stratification increase. These developments will enable marine scientists to predict changes in geochemical cycles mediated by microbial communities and to gauge their broader impacts.

Understanding cell cycle and cell death regulation provides novel weapons against human diseases.

PubMed

Wiman, K G; Zhivotovsky, B

2017-05-01

Cell division, cell differentiation and cell death are the three principal physiological processes that regulate tissue homoeostasis in multicellular organisms. The growth and survival of cells as well as the integrity of the genome are regulated by a complex network of pathways, in which cell cycle checkpoints, DNA repair and programmed cell death have critical roles. Disruption of genomic integrity and impaired regulation of cell death may both lead to uncontrolled cell growth. Compromised cell death can also favour genomic instability. It is becoming increasingly clear that dysregulation of cell cycle and cell death processes plays an important role in the development of major disorders such as cancer, cardiovascular disease, infection, inflammation and neurodegenerative diseases. Research achievements in these fields have led to the development of novel approaches for treatment of various conditions associated with abnormalities in the regulation of cell cycle progression or cell death. A better understanding of how cellular life-and-death processes are regulated is essential for this development. To highlight these important advances, the Third Nobel Conference entitled 'The Cell Cycle and Cell Death in Disease' was organized at Karolinska Institutet in 2016. In this review we will summarize current understanding of cell cycle progression and cell death and discuss some of the recent advances in therapeutic applications in pathological conditions such as cancer, neurological disorders and inflammation. © 2017 The Association for the Publication of the Journal of Internal Medicine.

A Satellite View of Global Water and Energy Cycling

NASA Astrophysics Data System (ADS)

Houser, P. R.

2012-12-01

The global water cycle describes liquid, solid and vapor water dynamics as it moves through the atmosphere, oceans and land. Life exists because of water, and civilization depends on adapting to the constraints imposed by water availability. The carbon, water and energy cycles are strongly interdependent - energy is moved through evaporation and condensation, and photosynthesis is closely related to transpiration. There are significant knowledge gaps about water storage, fluxes and dynamics - we currently do not really know how much water is stored in snowpacks, groundwater or reservoirs. The view from space offers a vision for water science advancement. This vision includes observation, understanding, and prediction advancements that will improve water management and to inform water-related infrastructure that planning to provide for human needs and to protect the natural environment. The water cycle science challenge is to deploy a series of coordinated earth observation satellites, and to integrate in situ and space-borne observations to quantify the key water-cycle state variables and fluxes. The accompanying societal challenge is to integrate this information along with water cycle physics, and ecosystems and societal considerations as a basis for enlightened water resource management and to protect life and property from effects of water cycle extremes. Better regional to global scale water-cycle observations and predictions need to be readily available to reduce loss of life and property caused by water-related hazards. To this end, the NASA Energy and Water cycle Study (NEWS) has been documenting the satellite view of the water cycle with a goal of enabling improved, observationally based, predictions of water and energy cycle consequences of Earth system variability and change. NEWS has fostered broad interdisciplinary collaborations to study experimental and operational satellite observations and has developed analysis tools for characterizing air/sea fluxes, ocean circulation, atmospheric states, radiative balances, land surface states, sub-surface hydrology, snow and ice. This presentation will feature an overview of recent progress towards this challenge, and lay out the plan for coordination with complementary international efforts.

Understanding feedback report uptake: process evaluation findings from a 13-month feedback intervention in long-term care settings.

PubMed

Sales, Anne E; Fraser, Kimberly; Baylon, Melba Andrea B; O'Rourke, Hannah M; Gao, Gloria; Bucknall, Tracey; Maisey, Suzanne

2015-02-12

Long-term care settings provide care to a large proportion of predominantly older, highly disabled adults across the United States and Canada. Managing and improving quality of care is challenging, in part because staffing is highly dependent on relatively non-professional health care aides and resources are limited. Feedback interventions in these settings are relatively rare, and there has been little published information about the process of feedback intervention. Our objectives were to describe the key components of uptake of the feedback reports, as well as other indicators of participant response to the intervention. We conducted this project in nine long-term care units in four facilities in Edmonton, Canada. We used mixed methods, including observations during a 13-month feedback report intervention with nine post-feedback survey cycles, to conduct a process evaluation of a feedback report intervention in these units. We included all facility-based direct care providers (staff) in the feedback report distribution and survey administration. We conducted descriptive analyses of the data from observations and surveys, presenting this in tabular and graphic form. We constructed a short scale to measure uptake of the feedback reports. Our analysis evaluated feedback report uptake by provider type over the 13 months of the intervention. We received a total of 1,080 survey responses over the period of the intervention, which varied by type of provider, facility, and survey month. Total number of reports distributed ranged from 103 in cycle 12 to 229 in cycle 3, although the method of delivery varied widely across the period, from 12% to 65% delivered directly to individuals and 15% to 84% left for later distribution. The key elements of feedback uptake, including receiving, reading, understanding, discussing, and reporting a perception that the reports were useful, varied by survey cycle and provider type, as well as by facility. Uptake, as we measured it, was consistently high overall, but varied widely by provider type and time period. We report detailed process data describing the aspects of uptake of a feedback report during an intensive, longitudinal feedback intervention in long-term care facilities. Uptake is a complex process for which we used multiple measures. We demonstrate the feasibility of conducting a complex longitudinal feedback intervention in relatively resource-poor long-term care facilities to a wider range of provider types than have been included in prior feedback interventions.

No One's Home: the Fate of Carbon on Lifeless Earths

NASA Astrophysics Data System (ADS)

Neveu, Marc

Although several thousands of exoplanets are now known, including many terrestrial planets, their possible geology and climates remain poorly understood and understudied. Yet, understanding how elements such as carbon are cycled between a planet's interior, surface, and atmosphere is crucial to predict how lifeless planets operate and, by contrast, be able to detect deviations from abiotic backgrounds due to biology, the holy grail of exoplanet science. As a first, feasible step towards the difficult, long-term goal of understanding how key reactive elements (H, C, N, O, S) are cycled in the atmospheres, surfaces, and interiors of terrestrial exoplanets through time, we propose to carry out a self-consistent theoretical study of the fate of carbon in the atmospheres and at the surfaces of Earth-like, lifeless exoplanets. We will: 1. Model the near-surface geochemistry and geophysics of the carbon cycle to determine net carbon gas fluxes as a function of terrestrial planet size and redox conditions; 2. Model the atmospheric fate of carbon species as a function of stellar input; 3. Perform simulations that self-consistently combine geological and atmospheric processes; 4. Convert resulting atmospheric compositions to spectra to be archived as a public database for use by observers. We will track the abiotic fate of carbon and its atmospheric expression on Earth-like planets as a function of three key parameters: planet size, surface and atmospheric redox conditions, and stellar irradiation. To do so, we will further develop and use state-of-theart planetary geological ("Geo") and atmospheric ("Atmos") models. We have previously developed a code that couples geophysical evolution and water-rock geochemistry (Neveu et al. 2015, GRL 42, 10197). Using this code, we will calculate the speciation of carbon species versus depth in subaerial oceans, their possible incorporation into the crust by water-rock interaction at the seafloor or by subduction of sediments, and outgassing as a function of temperature, pressure, and fluid/rock composition. We will expand this code with benchmarked parameterizations of land and seafloor weathering and outgassing rates. This modeling will result in detailed boundary conditions to be implemented into an existing atmospheric photochemical-climate model (DomagalGoldman et al. 2014, ApJ 792, 90). The atmospheric model will be used to predict species mixing ratios from net surface fluxes, given planetary and stellar parameters. The models will be benchmarked against what is known of the surfaces and atmospheres of the Earth (present and prior to atmospheric oxygenation) and Titan. Atmospheric model outputs will be fed back into the geological model in combined simulations of carbon cycling. We will investigate in detail the mutual feedbacks between geological and atmospheric processes, so far understudied for terrestrial exoplanets. The resulting atmospheric compositions will be converted to predicted exoplanet spectra using the Spectral Mapping Atmospheric Radiative Transfer model (SMART; Meadows & Crisp 1996, JGR 101, 4595). This grid of spectra will be made freely available to the exoplanet community. This proposal is relevant to the Exoplanets Research Program (E.3) objectives, as it "supports directly the scientific goals of advancing our knowledge and understanding of exoplanetary systems." It involves the "characterization of exoplanets (including their surfaces, interiors, and atmospheres) [...] including the determination of their compositions, dynamics, energetics, and chemical behaviors." This investigation will also advance "understanding the chemical and physical processes of exoplanets (including the state and evolution of their surfaces, interiors, and atmospheres)." Furthermore, this proposal is not "aimed at investigating the habitability of an exoplanet" and therefore not relevant to the Habitable Worlds program element (E.4).

The endothermic ATP hydrolysis and crossbridge attachment steps drive the increase of force with temperature in isometric and shortening muscle

PubMed Central

Offer, Gerald; Ranatunga, K W

2015-01-01

The isometric tetanic tension of skeletal muscle increases with temperature because attached crossbridge states bearing a relatively low force convert to those bearing a higher force. It was previously proposed that the tension-generating step(s) in the crossbridge cycle was highly endothermic and was therefore itself directly targeted by changes in temperature. However, this did not explain why a rapid rise in temperature (a temperature jump) caused a much slower rate of rise of tension than a rapid length step. This led to suggestions that the step targeted by a temperature rise is not the tension-generating step but is an extra step in the attached pathway of the crossbridge cycle, perhaps located on a parallel pathway. This enigma has been a major obstacle to a full understanding of the operation of the crossbridge cycle. We have now used a previously developed mechano-kinetic model of the crossbridge cycle in frog muscle to simulate the temperature dependence of isometric tension and shortening velocity. We allowed all five steps in the cycle to be temperature-sensitive. Models with different starting combinations of enthalpy changes and activation enthalpies for the five steps were refined by downhill simplex runs and scored by their ability to fit experimental data on the temperature dependence of isometric tension and the relationship between force and shortening velocity in frog muscle. We conclude that the first tension-generating step may be weakly endothermic and that the rise of tension with temperature is largely driven by the preceding two strongly endothermic steps of ATP hydrolysis and attachment of M.ADP.Pi to actin. The refined model gave a reasonable fit to the available experimental data and after a temperature jump the overall rate of tension rise was much slower than after a length step as observed experimentally. The findings aid our understanding of the crossbridge cycle by showing that it may not be necessary to include an additional temperature-sensitive step. PMID:25564737

An Active Broad Area Cooling Model of a Cryogenic Propellant Tank with a Single Stage Reverse Turbo-Brayton Cycle Cryocooler

NASA Technical Reports Server (NTRS)

Guzik, Monica C.; Tomsik, Thomas M.

2011-01-01

As focus shifts towards long-duration space exploration missions, an increased interest in active thermal control of cryogenic propellants to achieve zero boil-off of cryogens has emerged. An active thermal control concept of considerable merit is the integration of a broad area cooling system for a cryogenic propellant tank with a combined cryocooler and circulator system that can be used to reduce or even eliminate liquid cryogen boil-off. One prospective cryocooler and circulator combination is the reverse turbo-Brayton cycle cryocooler. This system is unique in that it has the ability to both cool and circulate the coolant gas efficiently in the same loop as the broad area cooling lines, allowing for a single cooling gas loop, with the primary heat rejection occurring by way of a radiator and/or aftercooler. Currently few modeling tools exist that can size and characterize an integrated reverse turbo-Brayton cycle cryocooler in combination with a broad area cooling design. This paper addresses efforts to create such a tool to assist in gaining a broader understanding of these systems, and investigate their performance in potential space missions. The model uses conventional engineering and thermodynamic relationships to predict the preliminary design parameters, including input power requirements, pressure drops, flow rate, cycle performance, cooling lift, broad area cooler line sizing, and component operating temperatures and pressures given the cooling load operating temperature, heat rejection temperature, compressor inlet pressure, compressor rotational speed, and cryogenic tank geometry. In addition, the model allows for the preliminary design analysis of the broad area cooling tubing, to determine the effect of tube sizing on the reverse turbo-Brayton cycle system performance. At the time this paper was written, the model was verified to match existing theoretical documentation within a reasonable margin. While further experimental data is needed for full validation, this tool has already made significant steps towards giving a clearer understanding of the performance of a reverse turbo-Brayton cycle cryocooler integrated with broad area cooling technology for zero boil-off active thermal control.

TIME DISTRIBUTIONS OF LARGE AND SMALL SUNSPOT GROUPS OVER FOUR SOLAR CYCLES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kilcik, A.; Yurchyshyn, V. B.; Abramenko, V.

2011-04-10

Here we analyze solar activity by focusing on time variations of the number of sunspot groups (SGs) as a function of their modified Zurich class. We analyzed data for solar cycles 20-23 by using Rome (cycles 20 and 21) and Learmonth Solar Observatory (cycles 22 and 23) SG numbers. All SGs recorded during these time intervals were separated into two groups. The first group includes small SGs (A, B, C, H, and J classes by Zurich classification), and the second group consists of large SGs (D, E, F, and G classes). We then calculated small and large SG numbers frommore » their daily mean numbers as observed on the solar disk during a given month. We report that the time variations of small and large SG numbers are asymmetric except for solar cycle 22. In general, large SG numbers appear to reach their maximum in the middle of the solar cycle (phases 0.45-0.5), while the international sunspot numbers and the small SG numbers generally peak much earlier (solar cycle phases 0.29-0.35). Moreover, the 10.7 cm solar radio flux, the facular area, and the maximum coronal mass ejection speed show better agreement with the large SG numbers than they do with the small SG numbers. Our results suggest that the large SG numbers are more likely to shed light on solar activity and its geophysical implications. Our findings may also influence our understanding of long-term variations of the total solar irradiance, which is thought to be an important factor in the Sun-Earth climate relationship.« less

A Mechanism for the Loading-Unloading Substorm Cycle Missing in MHD Global Magnetospheric Simulation Models

NASA Technical Reports Server (NTRS)

Klimas, A. J.; Uritsky, V.; Vassiliadis, D.; Baker, D. N.

2005-01-01

Loading and consequent unloading of magnetic flux is an essential element of the substorm cycle in Earth's magnetotail. We are unaware of an available global MHD magnetospheric simulation model that includes a loading- unloading cycle in its behavior. Given the central role that MHD models presently play in the development of our understanding of magnetospheric dynamics, and given the present plans for the central role that these models will play in ongoing space weather prediction programs, it is clear that this failure must be corrected. A 2-dimensional numerical driven current-sheet model has been developed that incorporates an idealized current- driven instability with a resistive MHD system. Under steady loading, the model exhibits a global loading- unloading cycle. The specific mechanism for producing the loading-unloading cycle will be discussed. It will be shown that scale-free avalanching of electromagnetic energy through the model, from loading to unloading, is carried by repetitive bursts of localized reconnection. Each burst leads, somewhat later, to a field configuration that is capable of exciting a reconnection burst again. This process repeats itself in an intermittent manner while the total field energy in the system falls. At the end of an unloading interval, the total field energy is reduced to well below that necessary to initiate the next unloading event and, thus, a loading-unloading cycle results. It will be shown that, in this model, it is the topology of bursty localized reconnection that is responsible for the appearance of the loading-unloading cycle.

AUTOMOTIVE DIESEL MAINTENANCE 1. UNIT XI, PART I--MAINTAINING THE FUEL SYSTEM (PART I), CUMMINS DIESEL ENGINES, PART II--UNIT REPLACEMENT (ENGINE).

ERIC Educational Resources Information Center

Human Engineering Inst., Cleveland, OH.

THIS MODULE OF A 30-MODULE COURSE IS DESIGNED TO DEVELOP AN UNDERSTANDING OF DIFFERENCES BETWEEN TWO AND FOUR CYCLE ENGINES, THE OPERATION AND MAINTENANCE OF THE DIESEL ENGINE FUEL SYSTEM, AND THE PROCEDURES FOR DIESEL ENGINE REMOVAL. TOPICS ARE (1) REVIEW OF TWO CYCLE AND FOUR CYCLE CONCEPT, (2) SOME BASIC CHARACTERISTICS OF FOUR CYCLE ENGINES,…

Framing Prospective Elementary Teachers' Conceptions of Dissolving as a Ladder of Explanations

NASA Astrophysics Data System (ADS)

Subramaniam, Karthigeyan; Esprivalo Harrell, Pamela

2013-11-01

The paper details an exploratory qualitative study that investigated 61 prospective teachers' conceptual understanding of dissolving salt and sugar in water respectively. The study was set within a 15-week elementary science methods course that included a 5E learning cycle lesson on dissolving, the instructional context. Oversby's (Prim Sci Rev 63:6-19, 2002, Aspects of teaching secondary science, Routledge Falmer, London, 2002) ladder of explanations for the context of dissolving, current scientific explanations for dissolving and perspectives on conceptions and misconceptions provided the unified framework for the study. Concept maps, interview transcripts, written artifacts, and drawings and narratives were used as data to investigate these prospective teachers' conceptual understanding of dissolving throughout the 15-weeks of the methods course. Analysis revealed that participants' explanations of dissolving were predominantly descriptive explanations (39 %) and interpretative explanations (38 %), with lower percentage occurrences of intentional (14 %) and cause and effect (9 %) level explanations. Most of these explanations were also constructed by a set of loosely connected and reinforcing everyday concepts abstracted from common everyday experiences making them misconceptions. Implications include: (1) the need for science teacher educators to use multiple platforms to derive their prospective elementary teachers' conceptual understandings of science content; and (2) to identify and help them identify their own scientific conceptions and misconceptions and how they influence the construction of scientific/nonscientific explanations. Science teacher educators also need to emphasize the role of meaningful frameworks associated with the concept that is being introduced during the Engage phase of the 5E learning cycle. This is important because, relevant prior knowledge is associated with the knowledge of the particle theory of matter and both are part of larger knowledge system comprised of interrelated scientific concepts.

Genetic alterations in Krebs cycle and its impact on cancer pathogenesis.

PubMed

Sajnani, Karishma; Islam, Farhadul; Smith, Robert Anthony; Gopalan, Vinod; Lam, Alfred King-Yin

2017-04-01

Cancer cells exhibit alterations in many cellular processes, including oxygen sensing and energy metabolism. Glycolysis in non-oxygen condition is the main energy production process in cancer rather than mitochondrial respiration as in benign cells. Genetic and epigenetic alterations of Krebs cycle enzymes favour the shift of cancer cells from oxidative phosphorylation to anaerobic glycolysis. Mutations in genes encoding aconitase, isocitrate dehydrogenase, succinate dehydrogenase, fumarate hydratase, and citrate synthase are noted in many cancers. Abnormalities of Krebs cycle enzymes cause ectopic production of Krebs cycle intermediates (oncometabolites) such as 2-hydroxyglutarate, and citrate. These oncometabolites stabilize hypoxia inducible factor 1 (HIF1), nuclear factor like 2 (Nrf2), inhibit p53 and prolyl hydroxylase 3 (PDH3) activities as well as regulate DNA/histone methylation, which in turn activate cell growth signalling. They also stimulate increased glutaminolysis, glycolysis and production of reactive oxygen species (ROS). Additionally, genetic alterations in Krebs cycle enzymes are involved with increased fatty acid β-oxidations and epithelial mesenchymal transition (EMT) induction. These altered phenomena in cancer could in turn promote carcinogenesis by stimulating cell proliferation and survival. Overall, epigenetic and genetic changes of Krebs cycle enzymes lead to the production of oncometabolite intermediates, which are important driving forces of cancer pathogenesis and progression. Understanding and applying the knowledge of these mechanisms opens new therapeutic options for patients with cancer. Copyright © 2017 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.

Searching for biogeochemical hot spots in three dimensions: Soil C and N cycling in hydropedologic settings in a northern hardwood forest

NASA Astrophysics Data System (ADS)

Morse, J. L.; Werner, S. F.; Gillin, C. P.; Goodale, C. L.; Bailey, S. W.; McGuire, K. J.; Groffman, P. M.

2014-08-01

Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a northern hardwood forest in Hubbard Brook Experimental Forest, New Hampshire, USA. We assessed variables related to C and N cycling in spodic hydropedologic settings (typical podzols, bimodal podzols, and Bh podzols) and groundwater seeps during August 2010. We found that soil horizons (Oi/Oe, Oa/A, and B) differed significantly for most variables. B horizons (>10 cm) accounted for 71% (±11%) of C pools and 62% (±10%) of microbial biomass C in the sampled soil profile, whereas the surface horizons (Oi/Oe and Oa/A; 0-10 cm) were dominant zones for N-cycle-related variables. Watershed-wide estimates of C and N cycling were higher by 34 to 43% (±17-19%) when rates, horizon thickness, and areal extent of each hydropedologic setting were incorporated, versus conventionally calculated estimates for typical podzols that included only the top 10 cm of mineral soil. Despite the variation in profile development in typical, bimodal, and Bh podzols, we did not detect significant differences in C and N cycling among them. Across all soil horizons and hydropedologic settings, we found strong links between biogeochemical cycling and soil C, suggesting that the accumulation of C in soils may be a robust indicator of microbial C and N cycling capacity in the landscape.

Surface water change as a significant contributor to global evapotranspiration change

NASA Astrophysics Data System (ADS)

Zhan, S.; Song, C.

2017-12-01

Water comprises a critical component of global/regional hydrological and biogeochemical cycles and is essential to all organisms including humans. In the past several decades, climate change has intensified the hydrological cycle, with significant implications for ecosystem services and feedback to regional and global climate. Evapotranspiration (ET) as a linking mechanism between land surface and atmosphere is central to the water cycle and an excellent indicator of the intensity of water cycle. Knowledge of the temporal changes of ET is crucial for accurately estimating global or regional water budgets and better understanding climate and hydrological interactions. While studies have examined changes in global ET, they were conducted using a constant land and surface water (SW) area. However, as many studies have found that global SW is very dynamic and their surface areas have generally been increasing since the 1980s. The conversion from land to water and vice versa significantly changes the local ET since water bodies evaporate at a rate that can be much higher than that of the land. Here, we quantify the global changes in ET caused by such land-water conversion using remotely-sensed SW area and various ET and potential ET products. New SW and lost SW between circa-1985 and circa-2015 were derived from remote sensing and were used to modify the local ET estimates. We found an increase in ET in all continents as consistent with the net increase in SW area. The increasing SW area lead to a global increase in ET by 30.38 ± 5.28 km3/yr. This is a significant contribution when compared to the 92.95 km3/yr/yr increase in ET between 1982-1997 and 103.43 km3/yr/yr decrease between 1998-2008 by Jung et al., (2010) assuming a constant SW. The results enhance our understanding of the water fluxes between the land and atmosphere and supplement land water budget estimates. We conclude that changes in SW lead to a significant change in global ET that cannot be neglected in global ET trend studies and should also be included in global water budget studies.

Using mental mapping to unpack perceived cycling risk.

PubMed

Manton, Richard; Rau, Henrike; Fahy, Frances; Sheahan, Jerome; Clifford, Eoghan

2016-03-01

Cycling is the most energy-efficient mode of transport and can bring extensive environmental, social and economic benefits. Research has highlighted negative perceptions of safety as a major barrier to the growth of cycling. Understanding these perceptions through the application of novel place-sensitive methodological tools such as mental mapping could inform measures to increase cyclist numbers and consequently improve cyclist safety. Key steps to achieving this include: (a) the design of infrastructure to reduce actual risks and (b) targeted work on improving safety perceptions among current and future cyclists. This study combines mental mapping, a stated-preference survey and a transport infrastructure inventory to unpack perceptions of cycling risk and to reveal both overlaps and discrepancies between perceived and actual characteristics of the physical environment. Participants translate mentally mapped cycle routes onto hard-copy base-maps, colour-coding road sections according to risk, while a transport infrastructure inventory captures the objective cycling environment. These qualitative and quantitative data are matched using Geographic Information Systems and exported to statistical analysis software to model the individual and (infra)structural determinants of perceived cycling risk. This method was applied to cycling conditions in Galway City (Ireland). Participants' (n=104) mental maps delivered data-rich perceived safety observations (n=484) and initial comparison with locations of cycling collisions suggests some alignment between perception and reality, particularly relating to danger at roundabouts. Attributing individual and (infra)structural characteristics to each observation, a Generalised Linear Mixed Model statistical analysis identified segregated infrastructure, road width, the number of vehicles as well as gender and cycling experience as significant, and interactions were found between individual and infrastructural variables. The paper concludes that mental mapping is a highly useful tool for assessing perceptions of cycling risk with a strong visual aspect and significant potential for public participation. This distinguishes it from more traditional cycling safety assessment tools that focus solely on the technical assessment of cycling infrastructure. Further development of online mapping tools is recommended as part of bicycle suitability measures to engage cyclists and the general public and to inform 'soft' and 'hard' cycling policy responses. Copyright © 2015 Elsevier Ltd. All rights reserved.

Walking and cycling to work despite reporting an unsupportive environment: insights from a mixed-method exploration of counterintuitive findings.

PubMed

Guell, Cornelia; Panter, Jenna; Ogilvie, David

2013-05-24

Perceptions of the environment appear to be associated with walking and cycling. We investigated the reasons for walking and cycling to or from work despite reporting an unsupportive route environment in a sample of commuters. This mixed-method analysis used data collected as part of the Commuting and Health in Cambridge study. 1164 participants completed questionnaires which assessed the travel modes used and time spent on the commute and the perceived environmental conditions on the route to work. A subset of 50 also completed qualitative interviews in which they discussed their experiences of commuting. Participants were included in this analysis if they reported unsupportive conditions for walking or cycling on their route (e.g. heavy traffic) in questionnaires, walked or cycled all or part of the journey to work, and completed qualitative interviews. Using content analysis of these interviews, we investigated their reasons for walking or cycling. 340 participants reported walking or cycling on the journey to work despite unsupportive conditions, of whom 15 also completed qualitative interviews. From these, three potential explanations emerged. First, some commuters found strategies for coping with unsupportive conditions. Participants described knowledge of the locality and opportunities for alternative routes more conducive to active commuting, as well as their cycling experience and acquired confidence to cycle in heavy traffic. Second, some commuters had other reasons for being reliant on or preferring active commuting despite adverse environments, such as childcare arrangements, enjoyment, having more control over their journey time, employers' restrictions on car parking, or the cost of petrol or parking. Finally, some survey respondents appeared to have reported not their own environmental perceptions but those of others such as family members or 'the public', partly to make a political statement regarding the adversity of active commuting in their setting. Participants report walking and cycling to work despite adverse environmental conditions. Understanding this resilience might be just as important as investigating 'barriers' to cycling. These findings suggest that developing knowledge of safe walking and cycling routes, improving cycling confidence and restricting workplace parking may help to encourage walking and cycling to and from work.

Walking and cycling to work despite reporting an unsupportive environment: insights from a mixed-method exploration of counterintuitive findings

PubMed Central

2013-01-01

Background Perceptions of the environment appear to be associated with walking and cycling. We investigated the reasons for walking and cycling to or from work despite reporting an unsupportive route environment in a sample of commuters. Methods This mixed-method analysis used data collected as part of the Commuting and Health in Cambridge study. 1164 participants completed questionnaires which assessed the travel modes used and time spent on the commute and the perceived environmental conditions on the route to work. A subset of 50 also completed qualitative interviews in which they discussed their experiences of commuting. Participants were included in this analysis if they reported unsupportive conditions for walking or cycling on their route (e.g. heavy traffic) in questionnaires, walked or cycled all or part of the journey to work, and completed qualitative interviews. Using content analysis of these interviews, we investigated their reasons for walking or cycling. Results 340 participants reported walking or cycling on the journey to work despite unsupportive conditions, of whom 15 also completed qualitative interviews. From these, three potential explanations emerged. First, some commuters found strategies for coping with unsupportive conditions. Participants described knowledge of the locality and opportunities for alternative routes more conducive to active commuting, as well as their cycling experience and acquired confidence to cycle in heavy traffic. Second, some commuters had other reasons for being reliant on or preferring active commuting despite adverse environments, such as childcare arrangements, enjoyment, having more control over their journey time, employers’ restrictions on car parking, or the cost of petrol or parking. Finally, some survey respondents appeared to have reported not their own environmental perceptions but those of others such as family members or ‘the public’, partly to make a political statement regarding the adversity of active commuting in their setting. Conclusions Participants report walking and cycling to work despite adverse environmental conditions. Understanding this resilience might be just as important as investigating ‘barriers’ to cycling. These findings suggest that developing knowledge of safe walking and cycling routes, improving cycling confidence and restricting workplace parking may help to encourage walking and cycling to and from work. PMID:23705951

Pervasive drought legacies in forest ecosystems and their implications for carbon cycle models

Treesearch

W. R. L. Anderegg; C. Schwalm; F. Biondi; J. J. Camarero; G. Koch; M. Litvak; K. Ogle; J. D. Shaw; E. Shevliakova; A. P. Williams; A. Wolf; E. Ziaco; S. Pacala

2015-01-01

The impacts of climate extremes on terrestrial ecosystems are poorly understood but important for predicting carbon cycle feedbacks to climate change. Coupled climate-carbon cycle models typically assume that vegetation recovery from extreme drought is immediate and complete, which conflicts with the understanding of basic plant physiology. We examined the recovery of...

Global Water Cycle Diagrams Minimize Human Influence and Over-represent Water Security

NASA Astrophysics Data System (ADS)

Abbott, B. W.; Bishop, K.; Zarnetske, J. P.; Minaudo, C.; Chapin, F. S., III; Plont, S.; Marçais, J.; Ellison, D.; Roy Chowdhury, S.; Kolbe, T.; Ursache, O.; Hampton, T. B.; GU, S.; Chapin, M.; Krause, S.; Henderson, K. D.; Hannah, D. M.; Pinay, G.

2017-12-01

The diagram of the global water cycle is the central icon of hydrology, and for many people, the point of entry to thinking about key scientific concepts such as conservation of mass, teleconnections, and human dependence on ecological systems. Because humans now dominate critical components of the hydrosphere, improving our understanding of the global water cycle has graduated from an academic exercise to an urgent priority. To assess how the water cycle is conceptualized by researchers and the general public, we analyzed 455 water cycle diagrams from textbooks, scientific articles, and online image searches performed in different languages. Only 15% of diagrams integrated human activity into the water cycle and 77% showed no sign of humans whatsoever, although representation of humans varied substantially by region (lowest in China, N. America, and Australia; highest in Western Europe). The abundance and accessibility of freshwater resources were overrepresented, with 98% of diagrams omitting water pollution and climate change, and over 90% of diagrams making no distinction for saline groundwater and lakes. Oceanic aspects of the water cycle (i.e. ocean size, circulation, and precipitation) and related teleconnections were nearly always underrepresented. These patterns held across disciplinary boundaries and through time. We explore the historical and contemporary reasons for some of these biases and present a revised version of the global water cycle based on research from natural and social sciences. We conclude that current depictions of the global water cycle convey a false sense of water security and that reintegrating humans into water cycle diagrams is an important first step towards understanding and sustaining the hydrosocial cycle.

GEWEX: The Global Energy and Water Cycle Experiment

NASA Technical Reports Server (NTRS)

Chahine, M.; Vane, D.

1994-01-01

GEWEX is one of the world's largest global change research programs. Its purpose is to observe and understand the hydrological cycle and energy fluxes in the atmosphere, at land surfaces and in the upper oceans.

Creative Writing and the Water Cycle.

ERIC Educational Resources Information Center

Young, Rich; Virmani, Jyotika; Kusek, Kristen M.

2001-01-01

Uses the story "The Life of a Drop of Water" to initiate a creative writing activity and teach about the water cycle. Attempts to stimulate students' understanding of a scientific concept by using their imaginations. (YDS)

Quantitative Analysis of Three-dimensional Microstructure of Li-ion Battery Electrodes

NASA Astrophysics Data System (ADS)

Liu, Zhao

Li-ion batteries (LIBs) have attracted considerable attention in the past two decades due to their widespread applications in portable electronics, and their growing use in electric vehicles and large-scale grid storage. Increasing battery energy density and powder density while maintaining long life, along with battery safety, are the biggest challenges that limit their further development. Various approaches with materials and chemistry have been employed to improve performance. However, one less-studied aspect that also impacts performance is the electrode microstructure. In particular, three-dimensional (3D) electrode microstructural data for LIB electrodes, which were not widely available prior to this thesis, can provide important input for understanding and improving LIB performance. The focus of this thesis is to apply 3D tomographic techniques, together with electrochemical performance data, to obtain LIB microstructure-performance correlations. Two advanced 3D structural analysis techniques, focused ion beam-scanning electron microscopy (FIB-SEM) and transmission X-ray microscopy (TXM) nanotomography, are used to quantify LIB electrode microstructure. 3D characterization of LIB electrode microstructure is used to obtain a deeper understanding of mechanisms that limit LIB performance. Microstructural characterization before and after cycling is used to explore capacity loss mechanisms. It is hoped that the results can guide electrode microstructures design to improve performance and stability. Two types of commercial electrodes, LiCoO2 and LiCoO 2/Li(Ni1/3Mn1/3Co1/3)O2, are studied using FIB-SEM and TXM. Both methods were found to be applicable to quantifying the oxide particle microstructure, including volume fraction, surface area, and particle size distribution, and results agreed well. However, structural inhomogeneity found in these commercial samples, limited the capability to resolve microstructural changes during cycling. In order to also quantify carbonaceous phases in the electrodes, which strongly correlate with LIB transport properties, a three-phase FIB-SEM method was developed where silicone resin was infiltrated into electrode pores, providing good image contrast with the carbon particles. Structural parameters including phase connectivity and tortuosity are quantified for commercial LiCoO 2 and laboratory-made LiFePO4 electrodes to help understand the transport process in these electrodes. For LiCoO2 electrodes, a heterogeneous tortuosity distribution observed in the electrolyte phase may result in inhomogeneous charge/discharge states, and consequently cause battery degradation. For LiFePO4 electrodes, highly percolated and less tortuous carbon found in a templated electrode explain its better high-C-rate performance. Finally, laboratory-made LiMn2O4 electrodes were electrochemically cycled with different operation parameters, including cycle number, temperature, and operating voltage. Quantitative analyses on 3D TXM data sets indicate particle fracture, mainly due to tetragonal to cubic phase transformations induced by the Jahn-Teller effect, resulting in electrode degradation. Moreover, high temperature operation is found to enhance active material dissolution and can also accelerate cell degradation. This ex-situ method, which combines electrochemical cycling and statistical analysis, proved to be an effective approach to provide insight for the interpretation of complex mechanical and electrochemical interactions within the electrodes.

The Package-Based Development Process in the Flight Dynamics Division

NASA Technical Reports Server (NTRS)

Parra, Amalia; Seaman, Carolyn; Basili, Victor; Kraft, Stephen; Condon, Steven; Burke, Steven; Yakimovich, Daniil

1997-01-01

The Software Engineering Laboratory (SEL) has been operating for more than two decades in the Flight Dynamics Division (FDD) and has adapted to the constant movement of the software development environment. The SEL's Improvement Paradigm shows that process improvement is an iterative process. Understanding, Assessing and Packaging are the three steps that are followed in this cyclical paradigm. As the improvement process cycles back to the first step, after having packaged some experience, the level of understanding will be greater. In the past, products resulting from the packaging step have been large process documents, guidebooks, and training programs. As the technical world moves toward more modularized software, we have made a move toward more modularized software development process documentation, as such the products of the packaging step are becoming smaller and more frequent. In this manner, the QIP takes on a more spiral approach rather than a waterfall. This paper describes the state of the FDD in the area of software development processes, as revealed through the understanding and assessing activities conducted by the COTS study team. The insights presented include: (1) a characterization of a typical FDD Commercial Off the Shelf (COTS) intensive software development life-cycle process, (2) lessons learned through the COTS study interviews, and (3) a description of changes in the SEL due to the changing and accelerating nature of software development in the FDD.

Harnessing long-term flux records to better understand ecosystem response to drought

NASA Astrophysics Data System (ADS)

Novick, K. A.; Ficklin, D. L.; Stoy, P. C.; Williams, C. A.; Bohrer, G.; Oishi, A. C.; Papuga, S. A.; Blanken, P.; Noormets, A.; Scott, R. L.; Wang, L.; Roman, D. T.; Yi, K.; Sulman, B. N.; Phillips, R.

2016-12-01

While ongoing climate change affects a number of meteorological drivers relevant to plant functioning, the predicted increase in the frequency and severity of droughts may ultimately have the biggest impact on ecosystem carbon cycling. Because it is difficult to experimentally manipulate all of the meteorological drivers that change during drought (including precipitation, light, temperature, and humidity), our understanding of the mechanisms by which plants respond to drought is generally limited to an understanding of how plants respond to variable soil moisture. As flux tower records grow in length and number, they permit us to harness natural spatial and temporal variability in hydrologic condition to better understand how ecosystems respond to the full suite of meteorological drivers that change during drought stress. Here, a series of case studies are presented that illustrate how long term flux data can be used to disentangle limitations to ecosystem functioning imposed by declining soil moisture as compared to rising atmospheric demand for water during drought. At the site-level, we pair observations from the Morgan-Monroe State Forest Ameriflux tower (active since 1999) with eco-physiological datasets collected during the severe 2012 Midwestern drought. We show that vapor pressure deficit (VPD) limits ecosystem carbon uptake and transpiration as much as soil moisture, but that individual species vary in their sensitivity to these drivers. We then present results from two cross-site Ameriflux syntheses that quantify how VPD as compared to soil moisture limitations to carbon and water cycling vary across broad climate gradients spanning semi-arid to mesic biomes. Informed by these results, we end by highlighting ways that flux network data may be leveraged together with other eco-physiological networks and databases to further expand our understanding of the mechanisms determining ecosystem response to drought.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Verbeeck, Hans; Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Kearsley, Elizabeth; Cizungu, Landry; Boeckx, Pascal

2017-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Central Africa, focussing on shifts in carbon allocation, forest structure, nutrient cycling and functional composition. The Ecuadorian transect has 16 plots (40 by 40 m) and ranges from 400 to 3000 m.a.s.l., and the Rwandan transect has 20 plots (40 by 40 m) from 1500 to 3000 m.a.s.l. All plots were inventoried and canopy, litter and soil were extensively sampled. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed altitudinal adaption mechanisms are. This could provide us with vital information of the ecological responses of both biomes to future global change scenarios. Additionally, comparison of nutrient shifts and trait-based functional composition allows us to compare the biogeochemical cycles of African and South-American tropical forests.

Dendrites and Pits: Untangling the Complex Behavior of Lithium Metal Anodes through Operando Video Microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wood, Kevin N.; Kazyak, Eric; Chadwick, Alexander F.

Enabling ultra-high energy density rechargeable Li batteries would have widespread impact on society. But, the critical challenges of Li metal anodes (most notably cycle life and safety) remain unsolved. This is attributed to the evolution of Li metal morphology during cycling, which leads to dendrite growth and surface pitting. Herein, we present a comprehensive understanding of the voltage variations observed during Li metal cycling, which is directly correlated to morphology evolution through the use of operando video microscopy. A custom-designed visualization cell was developed to enable operando synchronized observation of Li metal electrode morphology and electrochemical behavior during cycling. Amore » mechanistic understanding of the complex behavior of these electrodes is gained through correlation with continuum-scale modeling, which provides insight into the dominant surface kinetics. Our work provides a detailed explanation of (1) when dendrite nucleation occurs, (2) how those dendrites evolve as a function of time, (3) when surface pitting occurs during Li electrodissolution, (4) kinetic parameters that dictate overpotential as the electrode morphology evolves, and (5) how this understanding can be applied to evaluate electrode performance in a variety of electrolytes. Our results provide detailed insight into the interplay between morphology and the dominant electrochemical processes occurring on the Li electrode surface through an improved understanding of changes in cell voltage, which represents a powerful new platform for analysis.« less

Dendrites and Pits: Untangling the Complex Behavior of Lithium Metal Anodes through Operando Video Microscopy

DOE PAGES

Wood, Kevin N.; Kazyak, Eric; Chadwick, Alexander F.; ...

2015-10-14

Enabling ultra-high energy density rechargeable Li batteries would have widespread impact on society. But, the critical challenges of Li metal anodes (most notably cycle life and safety) remain unsolved. This is attributed to the evolution of Li metal morphology during cycling, which leads to dendrite growth and surface pitting. Herein, we present a comprehensive understanding of the voltage variations observed during Li metal cycling, which is directly correlated to morphology evolution through the use of operando video microscopy. A custom-designed visualization cell was developed to enable operando synchronized observation of Li metal electrode morphology and electrochemical behavior during cycling. Amore » mechanistic understanding of the complex behavior of these electrodes is gained through correlation with continuum-scale modeling, which provides insight into the dominant surface kinetics. Our work provides a detailed explanation of (1) when dendrite nucleation occurs, (2) how those dendrites evolve as a function of time, (3) when surface pitting occurs during Li electrodissolution, (4) kinetic parameters that dictate overpotential as the electrode morphology evolves, and (5) how this understanding can be applied to evaluate electrode performance in a variety of electrolytes. Our results provide detailed insight into the interplay between morphology and the dominant electrochemical processes occurring on the Li electrode surface through an improved understanding of changes in cell voltage, which represents a powerful new platform for analysis.« less

Promoting Resilience: Breaking the Intergenerational Cycle of Adverse Childhood Experiences.

PubMed

Woods-Jaeger, Briana A; Cho, Bridget; Sexton, Chris C; Slagel, Lauren; Goggin, Kathy

2018-02-01

Adverse childhood experiences (ACEs), including trauma exposure, parent mental health problems, and family dysfunction, put children at risk for disrupted brain development and increased risk for later health problems and mortality. These negative effects may be prevented by resilience promoting environments that include protective caregiving relationships. We sought to understand (1) parents' experiences of ACEs, (2) the perceived impact on parenting, (3) protective factors that buffer ACEs potential negative impact, and (4) supports and services that can reduce the number and severity of ACEs and promote resilience among children exposed to early adversity. We conducted in-depth qualitative interviews with 11 low-income, urban parents of young children who had experienced ACEs. Interviews were analyzed for emergent themes and shared with parents from the community to ensure relevance and proper interpretation. Themes from these interviews describe the potential intergenerational cycle of ACEs and key factors that can break that cycle, including parent aspirations to make children's lives better and parent nurturance and support. Parents' suggestions for intervention are also presented. Our findings illuminate protective factors and family strengths that are important to build upon when developing and implementing interventions to promote resilience among parents and children exposed to early adversity. This study benefits from highly ecologically valid data obtained from low-socioeconomic status, racial/ethnic minority parents through one-on-one in-depth interviews and interpreted with the aid of community stakeholders through a community-based participatory research approach.

Uncovering Hidden Layers of Cell Cycle Regulation through Integrative Multi-omic Analysis

PubMed Central

Aviner, Ranen; Shenoy, Anjana; Elroy-Stein, Orna; Geiger, Tamar

2015-01-01

Studying the complex relationship between transcription, translation and protein degradation is essential to our understanding of biological processes in health and disease. The limited correlations observed between mRNA and protein abundance suggest pervasive regulation of post-transcriptional steps and support the importance of profiling mRNA levels in parallel to protein synthesis and degradation rates. In this work, we applied an integrative multi-omic approach to study gene expression along the mammalian cell cycle through side-by-side analysis of mRNA, translation and protein levels. Our analysis sheds new light on the significant contribution of both protein synthesis and degradation to the variance in protein expression. Furthermore, we find that translation regulation plays an important role at S-phase, while progression through mitosis is predominantly controlled by changes in either mRNA levels or protein stability. Specific molecular functions are found to be co-regulated and share similar patterns of mRNA, translation and protein expression along the cell cycle. Notably, these include genes and entire pathways not previously implicated in cell cycle progression, demonstrating the potential of this approach to identify novel regulatory mechanisms beyond those revealed by traditional expression profiling. Through this three-level analysis, we characterize different mechanisms of gene expression, discover new cycling gene products and highlight the importance and utility of combining datasets generated using different techniques that monitor distinct steps of gene expression. PMID:26439921

Accounting for ecosystem services in life cycle assessment, Part I: a critical review.

PubMed

Zhang, Yi; Singh, Shweta; Bakshi, Bhavik R

2010-04-01

If life cycle oriented methods are to encourage sustainable development, they must account for the role of ecosystem goods and services, since these form the basis of planetary activities and human well-being. This article reviews methods that are relevant to accounting for the role of nature and that could be integrated into life cycle oriented approaches. These include methods developed by ecologists for quantifying ecosystem services, by ecological economists for monetary valuation, and life cycle methods such as conventional life cycle assessment, thermodynamic methods for resource accounting such as exergy and emergy analysis, variations of the ecological footprint approach, and human appropriation of net primary productivity. Each approach has its strengths: economic methods are able to quantify the value of cultural services; LCA considers emissions and assesses their impact; emergy accounts for supporting services in terms of cumulative exergy; and ecological footprint is intuitively appealing and considers biocapacity. However, no method is able to consider all the ecosystem services, often due to the desire to aggregate all resources in terms of a single unit. This review shows that comprehensive accounting for ecosystem services in LCA requires greater integration among existing methods, hierarchical schemes for interpreting results via multiple levels of aggregation, and greater understanding of the role of ecosystems in supporting human activities. These present many research opportunities that must be addressed to meet the challenges of sustainability.

CarboNA: International Studies of the North American Carbon Cycle

NASA Astrophysics Data System (ADS)

Denning, S.; Cavallaro, N.; Ste-Marie, C.; Muhlia-Melo, A.

2009-05-01

A Science Steering Committee has been formed consisting of carbon cycle scientists from Canada, Mexico, and the United States and government agency contacts from each country, to draft a Science Plan for CarboNA. Science questions that we will address include: 1. What's the current carbon budget of NA and adjacent oceans, including spatial structure and seasonal-to- interannual variations? 2. What mechanisms are involved? What processes control the time mean vs the interannual variability? 3. When will sinks saturate? Will they become sources? Are there surprises in store? What roles will be played by melting permafrost, boreal warming, and subtropical desertification, and tropical development? 4. What are the likely responses of terrestrial ecosystems and coastal oceans to climate change and enhanced CO2? 5. What roles will economic development, energy technology, and trade play in mitigating increases in fossil fuel emissions? In addition to the national research programs already underway in the three countries, we anticipate special collaborative projects of international scope. For example: 1. Studies of the response of terrestrial ecosystems to climate change along an ecological gradient from the Arctic to the Tropics; 2. Truly continental budgets for atmospheric greenhouse gases using data from land-based, airborne, marine, and spaceborne platforms; 3. An aggressively interdisciplinary intensive experiment to understand and quantify carbon cycle processes and budgets in the Gulf of Mexico Basin; 4. Investigation of the turrent state and likely future changes in carbon cycling in coastal ocean environments, including river inputs of POC, DOC, DIC, and nutrients; impacts on fisheries and coastal economies; exchange between coastal oceans and deep ocean basins; and air-sea gas exchange; 5. Government-level agreements on data sharing and harmonization, including but not limited to forest inventories, agricultural data, fossil fuel emissions data, land-use data, energy and population and vehicle miles traveled, flux towers, trace gas measurements, etc. CarboNA will be introduced, and the process and content of current discussions will be presented.

Of Butterflies and Beetles: First Graders' Ways of Seeing and Talking about Insect Life Cycles.

ERIC Educational Resources Information Center

Shepardson, Daniel P.

1997-01-01

Explores children's understandings of insect life cycles through pre- and postinstructional interviews, analysis of children's journal entries, and talk that occurred throughout the instructional unit. Contains 38 references. (DDR)

The Interaction of Global Biochemical Cycles

NASA Technical Reports Server (NTRS)

Moore, B., III; Dastoor, M. N.

1984-01-01

The global biosphere in an exceedingly complex system. To gain an understanding of its structure and dynamic features, it is necessary not only to increase the knowledge about the detailed processes but also to develop models of how global interactions take place. Attempts to analyze the detailed physical, chemical and biological processes in this context need to be guided by an advancement of understanding of the latter. It is necessary to develop a strategy of data gathering that severs both these purposes simultaneously. The following papers deal with critical aspects in the global cycles of carbon, nitrogen, phosphorus and sulfur in details as well as the cycle of water and the flow of energy in the Earth's environment. The objective is to set partly the foundation for the development of mathematical models that allow exploration of the coupled dynamics of the global cycles of carbon, nitrogen, phosphorus, sulfur, as well as energy and water flux.

Fundamental Investigation of Si Anode in Li-Ion Cells

NASA Technical Reports Server (NTRS)

Wu, James J.; Bennett, William R.

2012-01-01

Silicon is a promising and attractive anode material to replace graphite for high capacity lithium ion cells since its theoretical capacity is approximately 10 times of graphite and it is an abundant element on earth. However, there are challenges associated with using silicon as Li-ion anode due to the significant first cycle irreversible capacity loss and subsequent rapid capacity fade during cycling. In this paper, cyclic voltammetry and electrochemical impedance spectroscopy are used to build a fundamental understanding of silicon anodes. The results show that it is difficult to form the SEI film on the surface of Si anode during the first cycle, the lithium ion insertion and de-insertion kinetics for Si are sluggish, and the cell internal resistance changes with the state of lithiation after electrochemical cycling. These results are compared with those for extensively studied graphite anodes. The understanding gained from this study will help to design better Si anodes.

Quality improvement on chemistry practicum courses through implementation of 5E learning cycle

NASA Astrophysics Data System (ADS)

Merdekawati, Krisna

2017-03-01

Two of bachelor of chemical education's competences are having practical skills and mastering chemistry material. Practicum courses are organized to support the competency achievement. Based on observation and evaluation, many problems were found in the implementation of practicum courses. Preliminary study indicated that 5E Learning Cycle can be used as an alternative solution in order to improve the quality of chemistry practicum course. The 5E Learning Cycle can provide positive influence on the achievement of the competence, laboratory skills, and students' understanding. The aim of the research was to describe the feasibility of implementation of 5E Learning Cycle on chemistry practicum courses. The research was based on phenomenology method in qualitative approach. The participants of the research were 5 person of chemistry laboratory manager (lecturers at chemistry and chemistry education department). They concluded that the 5E Learning Cycle could be implemented to improve the quality of the chemistry practicum courses. Practicum guides and assistant competences were organized to support the implementation of 5E Learning Cycle. It needed training for assistants to understand and implement in the stages of 5E Learning Cycle. Preparation of practical guidelines referred to the stages of 5E Learning Cycle, started with the introduction of contextual and applicable materials, then followed with work procedures that accommodate the stage of engagement, exploration, explanation, extension, and evaluation

Can Microbial Ecology and Mycorrhizal Functioning Inform Climate Change Models?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hofmockel, Kirsten; Hobbie, Erik

Our funded research focused on soil organic matter dynamics and plant-microbe interactions by examining the role of belowground processes and mechanisms across scales, including decomposition of organic molecules, microbial interactions, and plant-microbe interactions associated with a changing climate. Research foci included mycorrhizal mediated priming of soil carbon turnover, organic N use and depolymerization by free-living microbes and mycorrhizal fungi, and the use of isotopes as additional constraints for improved modeling of belowground processes. This work complemented the DOE’s mandate to understand both the consequences of atmospheric and climatic change for key ecosystems and the feedbacks on C cycling.

The soil microbiome — from metagenomics to metaphenomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jansson, Janet K.; Hofmockel, Kirsten S.

Soil microorganisms carry out important processes, including support of plant growth and cycling of carbon and other nutrients. However, the majority of soil microbes have not yet been isolated and their functions are largely unknown. Although metagenomic sequencing reveals microbial identities and functional gene information, it includes DNA from microbes with vastly varying physiological states. Therefore, metagenomics is only predictive of community functional potential. We posit that the next frontier lies in understanding the metaphenome, the product of the combined genetic potential of the microbiome and available resources. Here in this paper we describe examples of opportunities towards gaining understandingmore » of the soil metaphenome.« less

Shared molecular and cellular mechanisms of premature ageing and ageing-associated diseases.

PubMed

Kubben, Nard; Misteli, Tom

2017-10-01

Ageing is the predominant risk factor for many common diseases. Human premature ageing diseases are powerful model systems to identify and characterize cellular mechanisms that underpin physiological ageing. Their study also leads to a better understanding of the causes, drivers and potential therapeutic strategies of common diseases associated with ageing, including neurological disorders, diabetes, cardiovascular diseases and cancer. Using the rare premature ageing disorder Hutchinson-Gilford progeria syndrome as a paradigm, we discuss here the shared mechanisms between premature ageing and ageing-associated diseases, including defects in genetic, epigenetic and metabolic pathways; mitochondrial and protein homeostasis; cell cycle; and stem cell-regenerative capacity.

Tools for Detecting Causality in Space Systems

NASA Astrophysics Data System (ADS)

Johnson, J.; Wing, S.

2017-12-01

Complex systems such as the solar and magnetospheric envivonment often exhibit patterns of behavior that suggest underlying organizing principles. Causality is a key organizing principle that is particularly difficult to establish in strongly coupled nonlinear systems, but essential for understanding and modeling the behavior of systems. While traditional methods of time-series analysis can identify linear correlations, they do not adequately quantify the distinction between causal and coincidental dependence. We discuss tools for detecting causality including: granger causality, transfer entropy, conditional redundancy, and convergent cross maps. The tools are illustrated by applications to magnetospheric and solar physics including radiation belt, Dst (a magnetospheric state variable), substorm, and solar cycle dynamics.

The soil microbiome — from metagenomics to metaphenomics

DOE PAGES

Jansson, Janet K.; Hofmockel, Kirsten S.

2018-02-15

Soil microorganisms carry out important processes, including support of plant growth and cycling of carbon and other nutrients. However, the majority of soil microbes have not yet been isolated and their functions are largely unknown. Although metagenomic sequencing reveals microbial identities and functional gene information, it includes DNA from microbes with vastly varying physiological states. Therefore, metagenomics is only predictive of community functional potential. We posit that the next frontier lies in understanding the metaphenome, the product of the combined genetic potential of the microbiome and available resources. Here in this paper we describe examples of opportunities towards gaining understandingmore » of the soil metaphenome.« less

Ecdysone signaling induces two phases of cell cycle exit in Drosophila cells

PubMed Central

Guo, Yongfeng; Flegel, Kerry; Kumar, Jayashree; McKay, Daniel J.

2016-01-01

ABSTRACT During development, cell proliferation and differentiation must be tightly coordinated to ensure proper tissue morphogenesis. Because steroid hormones are central regulators of developmental timing, understanding the links between steroid hormone signaling and cell proliferation is crucial to understanding the molecular basis of morphogenesis. Here we examined the mechanism by which the steroid hormone ecdysone regulates the cell cycle in Drosophila. We find that a cell cycle arrest induced by ecdysone in Drosophila cell culture is analogous to a G2 cell cycle arrest observed in the early pupa wing. We show that in the wing, ecdysone signaling at the larva-to-puparium transition induces Broad which in turn represses the cdc25c phosphatase String. The repression of String generates a temporary G2 arrest that synchronizes the cell cycle in the wing epithelium during early pupa wing elongation and flattening. As ecdysone levels decline after the larva-to-puparium pulse during early metamorphosis, Broad expression plummets, allowing String to become re-activated, which promotes rapid G2/M progression and a subsequent synchronized final cell cycle in the wing. In this manner, pulses of ecdysone can both synchronize the final cell cycle and promote the coordinated acquisition of terminal differentiation characteristics in the wing. PMID:27737823

Nitrogen metabolism in haloarchaea

PubMed Central

Bonete, María José; Martínez-Espinosa, Rosa María; Pire, Carmen; Zafrilla, Basilio; Richardson, David J

2008-01-01

The nitrogen cycle (N-cycle), principally supported by prokaryotes, involves different redox reactions mainly focused on assimilatory purposes or respiratory processes for energy conservation. As the N-cycle has important environmental implications, this biogeochemical cycle has become a major research topic during the last few years. However, although N-cycle metabolic pathways have been studied extensively in Bacteria or Eukarya, relatively little is known in the Archaea. Halophilic Archaea are the predominant microorganisms in hot and hypersaline environments such as salted lakes, hot springs or salted ponds. Consequently, the denitrifying haloarchaea that sustain the nitrogen cycle under these conditions have emerged as an important target for research aimed at understanding microbial life in these extreme environments. The haloarchaeon Haloferax mediterranei was isolated 20 years ago from Santa Pola salted ponds (Alicante, Spain). It was described as a denitrifier and it is also able to grow using NO3-, NO2- or NH4+ as inorganic nitrogen sources. This review summarizes the advances that have been made in understanding the N-cycle in halophilic archaea using Hfx mediterranei as a haloarchaeal model. The results obtained show that this microorganism could be very attractive for bioremediation applications in those areas where high salt, nitrate and nitrite concentrations are found in ground waters and soils. PMID:18593475

Ecological Understanding 2: Transformation--A Key to Ecological Understanding.

ERIC Educational Resources Information Center

Carlsson, Britta

2002-01-01

Describes the structure and general features of the phenomenon of ecological understanding. Presents qualitatively different ways of experiencing cycling of matter and the flow of energy in the context of ecosystems. The idea of transformation is key to the development of ecological understanding. (Contains 17 references.) (Author/YDS)

Erosion and Accretion on a Mudflat: The Importance of Very Shallow-Water Effects

NASA Astrophysics Data System (ADS)

Shi, Benwei; Cooper, James R.; Pratolongo, Paula D.; Gao, Shu; Bouma, T. J.; Li, Gaocong; Li, Chunyan; Yang, S. L.; Wang, Ya Ping

2017-12-01

Understanding erosion and accretion dynamics during an entire tidal cycle is important for assessing their impacts on the habitats of biological communities and the long-term morphological evolution of intertidal mudflats. However, previous studies often omitted erosion and accretion during very shallow-water stages (VSWS, water depths < 0.20 m). It is during these VSWS that bottom friction becomes relatively strong and thus erosion and accretion dynamics are likely to differ from those during deeper flows. In this study, we examine the contribution of very shallow-water effects to erosion and accretion of the entire tidal cycle, based on measured and modeled time-series of bed-level changes. Our field experiments revealed that the VSWS accounted for only 11% of the duration of the entire tidal cycle, but erosion and accretion during these stages accounted for 35% of the bed-level changes of the entire tidal cycle. Predicted cumulative bed-level changes agree much better with measured results when the entire tidal cycle is modeled than when only the conditions at water depths of >0.2 m (i.e., probe submerged) are considered. These findings suggest that the magnitude of bed-level changes during VSWS should not be neglected when modeling morphodynamic processes. Our results are useful in understanding the mechanisms of micro-topography formation and destruction that often occur at VSWS, and also improve our understanding and modeling ability of coastal morphological changes.

The cell cycle.

PubMed

Singh, N; Lim, R B; Sawyer, M A

2000-07-01

The cell cycle and the cell cycle control system are the engines that drive life. They allow for the processes of cell renewal and the growth of organisms, under controlled conditions. The control system is essential for the monitoring of normal cell growth and replication of genetic material and to ensure that normal, functional daughter cells are produced at completion of each cell cycle. Although certain clinical applications exist which take advantage of the events of the cell cycle, our understanding of its mechanisms and how to manipulate them is infantile. The next decades will continue to see the effort of many researchers focused upon unlocking the mysteries of the cell cycle and the cell cycle control system.

The Contribution of Soils to North America's Current and Future Climate

NASA Astrophysics Data System (ADS)

Mayes, M. A.; Reed, S.; Thornton, P. E.; Lajtha, K.; Bailey, V. L.; Shrestha, G.; Jastrow, J. D.; Torn, M. S.

2015-12-01

This presentation will cover key aspects of the terrestrial soil carbon cycle in North America and the US for the upcoming State of the Carbon Cycle Report (SOCCRII). SOCCRII seeks to summarize how natural processes and human interactions affect the global carbon cycle, how socio-economic trends affect greenhouse gas concentrations in the atmosphere, and how ecosystems are influenced by and respond to greenhouse gas emissions, management decisions, and concomitant climate effects. Here, we will summarize the contemporary understanding of carbon stocks, fluxes, and drivers in the soil ecosystem compartment. We will highlight recent advances in modeling the magnitude of soil carbon stocks and fluxes, as well as the importance of remaining uncertainties in predicting soil carbon cycling and its relationship with climate. Attention will be given to the role of uncertainties in predicting future fluxes from soils, and how those uncertainties vary by region and ecosystem. We will also address how climate feedbacks and management decisions can enhance or minimize future climatic effects based on current understanding and observations, and will highlight select research needs to improve our understanding of the balance of carbon in soils in North America.

Leaky nitrogen cycle in pristine African montane rainforest soil

NASA Astrophysics Data System (ADS)

Rütting, Tobias; Cizungu Ntaboba, Landry; Roobroeck, Dries; Bauters, Marijn; Huygens, Dries; Boeckx, Pascal

2015-10-01

Many pristine humid tropical forests show simultaneously high nitrogen (N) richness and sustained loss of bioavailable N forms. To better understand this apparent upregulation of the N cycle in tropical forests, process-based understanding of soil N transformations, in geographically diverse locations, remains paramount. Field-based evidence is limited and entirely lacking for humid tropical forests on the African continent. This study aimed at filling both knowledge gaps by monitoring N losses and by conducting an in situ 15N labeling experiment in the Nyungwe tropical montane forest in Rwanda. Here we show that this tropical forest shows high nitrate (NO3-) leaching losses, confirming findings from other parts of the world. Gross N transformation rates point to an open soil N cycle with mineralized N nitrified rather than retained via immobilization; gross immobilization of NH4+ and NO3- combined accounted for 37% of gross mineralization, and plant N uptake is dominated by ammonium (NH4+). This study provided new process understanding of soil N cycling in humid tropical forests and added geographically independent evidence that humid tropical forests are characterized by soil N dynamics and N inputs sustaining bioavailable N loss.

Parasite-mediated interactions within the insect vector: Trypanosoma rangeli strategies.

PubMed

Garcia, Eloi S; Castro, Daniele P; Figueiredo, Marcela B; Azambuja, Patrícia

2012-05-30

Trypanosoma rangeli is a protozoan that is non-pathogenic for humans and other mammals but causes pathology in the genus Rhodnius. T. rangeli and R. prolixus is an excellent model for studying the parasite-vector interaction, but its cycle in invertebrates remains unclear. The vector becomes infected on ingesting blood containing parasites, which subsequently develop in the gut, hemolymph and salivary glands producing short and large epimastigotes and metacyclic trypomastigotes, which are the infective forms. The importance of the T. rangeli cycle is the flagellate penetration into the gut cells and invasion of the salivary glands. The establishment of the parasite depends on the alteration of some vector defense mechanisms. Herein, we present our understanding of T. rangeli infection on the vector physiology, including gut and salivary gland invasions, hemolymph reactions and behavior alteration.

Key Issues Concerning Biolog Use for Aerobic and Anaerobic Freshwater Bacterial Community-Level Physiological Profiling

NASA Astrophysics Data System (ADS)

Christian, Bradley W.; Lind, Owen T.

2006-06-01

Bacterial heterotrophy in aquatic ecosystems is important in the overall carbon cycle. Biolog MicroPlates provide information into the metabolic potential of bacteria involved in carbon cycling. Specifically, Biolog EcoPlatesTM were developed with ecologically relevant carbon substrates to allow investigators to measure carbon substrate utilization patterns and develop community-level physiological profiles from natural bacterial assemblages. However, understanding of the functionality of these plates in freshwater research is limited. We explored several issues of EcoPlate use for freshwater bacterial assemblages including inoculum density, incubation temperature, non-bacterial color development, and substrate selectivity. Each of these has various effects on plate interpretation. We offer suggestions and techniques to resolve these interpretation issues. Lastly we propose a technique to allow EcoPlate use in anaerobic freshwater bacterial studies.

Life cycle assessment modelling of waste-to-energy incineration in Spain and Portugal.

PubMed

Margallo, M; Aldaco, R; Irabien, A; Carrillo, V; Fischer, M; Bala, A; Fullana, P

2014-06-01

In recent years, waste management systems have been evaluated using a life cycle assessment (LCA) approach. A main shortcoming of prior studies was the focus on a mixture of waste with different characteristics. The estimation of emissions and consumptions associated with each waste fraction in these studies presented allocation problems. Waste-to-energy (WTE) incineration is a clear example in which municipal solid waste (MSW), comprising many types of materials, is processed to produce several outputs. This paper investigates an approach to better understand incineration processes in Spain and Portugal by applying a multi-input/output allocation model. The application of this model enabled predictions of WTE inputs and outputs, including the consumption of ancillary materials and combustibles, air emissions, solid wastes, and the energy produced during the combustion of each waste fraction. © The Author(s) 2014.

Outcomes of a Self-Regulated Learning Curriculum Model

NASA Astrophysics Data System (ADS)

Peters-Burton, Erin E.

2015-10-01

The purpose of this study was to describe connections among students' views of nature of science in relation to the goals of a curriculum delivered in a unique setting, one where a researcher and two teachers collaborated to develop a course devoted to teaching students about how knowledge is built in science. Students proceeded through a cycle of self-regulated phases, forethought, performance, and self-reflection, during each segment of the curriculum: (a) independent research, (b) knowledge building in the discipline of science, and (c) a citizen science project. Student views were measured at the beginning and end of the course using epistemic network analysis. The pretest map reported student understanding of science as experimentation and indicated three clusters representing the durability of knowledge, empirical evidence, and habits of mind, which were loosely connected and represented knowledge generation as external to personal thinking. The posttest map displayed a broader understanding of scientific endeavors beyond experimentation, a shift toward personal knowledge generation, and indicated a larger number of connections among three more tightly oriented clusters: empirical evidence, habits of mind, and tentativeness. Implications include the potential to build curriculum that purposefully considers reinforcing cycles of learning of the nature of science in different contexts.

Grand challenges in understanding the interplay of climate and land changes

USGS Publications Warehouse

Liu, Shuguang; Bond-Lamberty, Ben; Boysen, Lena R.; Ford, James D.; Fox, Andrew; Gallo, Kevin; Hatfield, Jerry L.; Henebry, Geoffrey M.; Huntington, Thomas G.; Liu, Zhihua; Loveland, Thomas R.; Norby, Richard J.; Sohl, Terry L.; Steiner, Allison L.; Yuan, Wenping; Zhang, Zhao; Zhao, Shuqing

2017-01-01

Half of Earth’s land surface has been altered by human activities, creating various consequences on the climate and weather systems at local to global scales, which in turn affect a myriad of land surface processes and the adaptation behaviors. This study reviews the status and major knowledge gaps in the interactions of land and atmospheric changes and present 11 grand challenge areas for the scientific research and adaptation community in the coming decade. These land-cover and land-use change (LCLUC)-related areas include 1) impacts on weather and climate, 2) carbon and other biogeochemical cycles, 3) biospheric emissions, 4) the water cycle, 5) agriculture, 6) urbanization, 7) acclimation of biogeochemical processes to climate change, 8) plant migration, 9) land-use projections, 10) model and data uncertainties, and, finally, 11) adaptation strategies. Numerous studies have demonstrated the effects of LCLUC on local to global climate and weather systems, but these putative effects vary greatly in magnitude and even sign across space, time, and scale and thus remain highly uncertain. At the same time, many challenges exist toward improved understanding of the consequences of atmospheric and climate change on land process dynamics and services. Future effort must improve the understanding of the scale-dependent, multifaceted perturbations and feedbacks between land and climate changes in both reality and models. To this end, one critical cross-disciplinary need is to systematically quantify and better understand measurement and model uncertainties. Finally, LCLUC mitigation and adaptation assessments must be strengthened to identify implementation barriers, evaluate and prioritize opportunities, and examine how decision-making processes work in specific contexts.

Climate and the Carbon Cycle

NASA Astrophysics Data System (ADS)

Manley, Jim

2017-04-01

Climate and the Carbon Cycle EOS3a Science in tomorrow's classroom Students, like too much of the American public, are largely unaware or apathetic to the changes in world climate and the impact that these changes have for life on Earth. A study conducted by Michigan State University and published in 2011 by Science Daily titled 'What carbon cycle? College students lack scientific literacy, study finds'. This study relates how 'most college students in the United States do not grasp the scientific basis of the carbon cycle - an essential skill in understanding the causes and consequences of climate change.' The study authors call for a new approach to teaching about climate. What if teachers better understood vital components of Earth's climate system and were able to impart his understanding to their students? What if students based their responses to the information taught not on emotion, but on a deeper understanding of the forces driving climate change, their analysis of the scientific evidence and in the context of earth system science? As a Middle School science teacher, I have been given the opportunity to use a new curriculum within TERC's EarthLabs collection, Climate and the Carbon Cycle, to awaken those brains and assist my students in making personal lifestyle choices based on what they had learned. In addition, with support from TERC and The University of Texas Institute for Geophysics I joined others to begin training other teachers on how to implement this curriculum in their classrooms to expose their students to our changing climate. Through my poster, I will give you (1) a glimpse into the challenges faced by today's science teachers in communicating the complicated, but ever-deepening understanding of the linkages between natural and human-driven factors on climate; (2) introduce you to a new module in the EarthLabs curriculum designed to expose teachers and students to global scientific climate data and instrumentation; and (3) illustrate how student worldviews are changed though exposure to the latest in scientific discovery and understanding.

The development and validation of a three-tier diagnostic test measuring pre-service elementary education and secondary science teachers' understanding of the water cycle

NASA Astrophysics Data System (ADS)

Schaffer, Dannah Lynn

The main goal of this research study was to develop and validate a three-tier diagnostic test to determine pre-service teachers' (PSTs) conceptual knowledge of the water cycle. For a three-tier diagnostic test, the first tier assesses content knowledge; in the second tier, a reason is selected for the content answer; and the third tier allows test-takers to select how confident they are in their answers for the first two tiers. The second goal of this study was to diagnose any alternative conceptions PSTs might have about the water cycle. The Water Cycle Diagnostic Test (WCDT) was developed using the theoretical framework by Treagust (1986, 1988, and 1995), and in similar studies that developed diagnostic tests (e.g., Calean & Subramaniam, 2010a; Odom & Barrow, 2007; Pesman & Eryilmaz, 2010). The final instrument consisted of 15 items along with a demographic survey that examined PSTs' weather-related experiences that may or may not have affected the PSTs' understanding of the water cycle. The WCDT was administered to 77 PSTs enrolled in science methods courses during the fall of 2012. Among the 77 participants, 37 of the PSTs were enrolled in elementary education (EPST) and 40 in secondary science (SPST). Using exploratory factor analysis, five categories were factored out for the WCDT: Phase Change of Water; Condensation and Storage; Clouds; Global Climate Change; and Movement through the Water Cycle. Analysis of the PSTs' responses demonstrated acceptable reliability (alpha = 0.62) for the instrument, and acceptable difficulty indices and discrimination indices for 12 of the items. Analysis indicated that the majority of the PSTs had a limited understanding of the water cycle. Of the PSTs sampled, SPSTs were significantly more confident in their answers' on the WCDT than the EPSTs. Completion of an undergraduate atmospheric science and/or meteorology course, as well as a higher interest in listening and/or viewing weather-related programs, resulted in PSTs having greater understanding and confidence in their answers on the WCDT. The analysis of the PSTs' responses revealed 49 potential alternative conceptions and areas where PSTs' lack of knowledge was revealed from the WCDT.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Taylor, Mark A.; Roesler, Erika Louise; Bosler, Peter Andrew

The Department of Energy’s (DOE) Biological and Environmental Research project, “Water Cycle and Climate Extremes Modeling” is improving our understanding and modeling of regional details of the Earth’s water cycle. Sandia is using high resolution model behavior to investigate storms in the Arctic.

LIFE CYCLE ASSESSMENT: INVENTORY GUIDELINES AND PRINCIPLES

EPA Science Inventory

The U.S. Environmental Protection Agency (EPA) is describing the process, the underlying data, and the Inherent assumptions Involved in conducting the Inventory component of a life-cycle assessment (LCA) In order to facilitate understanding by potential users. This Inventory...

Properties of Gas Mixtures and Their Use in Mixed-Refrigerant Joule-Thomson Refrigerators

NASA Astrophysics Data System (ADS)

Luo, E.; Gong, M.; Wu, J.; Zhou, Y.

2004-06-01

The Joule-Thomson (J-T) effect has been widely used for achieving low temperatures. In the past few years, much progress has been made in better understanding the working mechanism of the refrigeration method and in developing prototypes for different applications. In this talk, there are three aspects of our research work to be discussed. First, some special thermal properties of the mixtures for achieving liquid nitrogen temperature range will be presented. Secondly, some important conclusions from the optimization of various mixed-refrigerant J-T cycles such as a simple J-T cycle and an auto-cascade mixed-refrigerant J-T cycle will be presented. Moreover, an auto-cascade, mixed-refrigerant J-T refrigerator with a special mixture capable of achieving about 50K will be mentioned. Finally, various prototypes based on the mixed-refrigerant refrigeration technology will be described. These applications include miniature J-T cryocoolers for cooling infrared detectors and high-temperature superconducting devices, cryosurgical knife for medical treatment, low-temperature refrigerators for biological storage and so forth. The on-going research work and unanswered questions for this technology will be also discussed.

Understanding the life cycle surface land requirements of natural gas-fired electricity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jordaan, Sarah M.; Heath, Garvin A.; Macknick, Jordan

The surface land use of fossil fuel acquisition and utilization has not been well characterized, inhibiting consistent comparisons of different electricity generation technologies. We present a method for robust estimation of the life cycle land use of electricity generated from natural gas through a case study that includes inventories of infrastructure, satellite imagery and well-level production. Approximately 500 sites in the Barnett Shale of Texas were sampled across five life cycle stages (production, gathering, processing, transmission and power generation). Total land use (0.62 m 2 MWh -1, 95% confidence intervals +/-0.01 m 2 MWh -1) was dominated by midstream infrastructure,more » particularly pipelines (74%). These results were sensitive to power plant heat rate (85-190% of the base case), facility lifetime (89-169%), number of wells per site (16-100%), well lifetime (92-154%) and pipeline right of way (58-142%). When replicated for other gas-producing regions and different fuels, our approach offers a route to enable empirically grounded comparisons of the land footprint of energy choices.« less

Understanding the life cycle surface land requirements of natural gas-fired electricity

DOE PAGES

Jordaan, Sarah M.; Heath, Garvin A.; Macknick, Jordan; ...

2017-10-02

The surface land use of fossil fuel acquisition and utilization has not been well characterized, inhibiting consistent comparisons of different electricity generation technologies. We present a method for robust estimation of the life cycle land use of electricity generated from natural gas through a case study that includes inventories of infrastructure, satellite imagery and well-level production. Approximately 500 sites in the Barnett Shale of Texas were sampled across five life cycle stages (production, gathering, processing, transmission and power generation). Total land use (0.62 m 2 MWh -1, 95% confidence intervals +/-0.01 m 2 MWh -1) was dominated by midstream infrastructure,more » particularly pipelines (74%). These results were sensitive to power plant heat rate (85-190% of the base case), facility lifetime (89-169%), number of wells per site (16-100%), well lifetime (92-154%) and pipeline right of way (58-142%). When replicated for other gas-producing regions and different fuels, our approach offers a route to enable empirically grounded comparisons of the land footprint of energy choices.« less

Life Cycle Water Consumption for Shale Gas and Conventional Natural Gas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, Corrie E.; Horner, Robert M.; Harto, Christopher B.

2013-10-15

Shale gas production represents a large potential source of natural gas for the nation. The scale and rapid growth in shale gas development underscore the need to better understand its environmental implications, including water consumption. This study estimates the water consumed over the life cycle of conventional and shale gas production, accounting for the different stages of production and for flowback water reuse (in the case of shale gas). This study finds that shale gas consumes more water over its life cycle (13–37 L/GJ) than conventional natural gas consumes (9.3–9.6 L/GJ). However, when used as a transportation fuel, shale gasmore » consumes significantly less water than other transportation fuels. When used for electricity generation, the combustion of shale gas adds incrementally to the overall water consumption compared to conventional natural gas. The impact of fuel production, however, is small relative to that of power plant operations. The type of power plant where the natural gas is utilized is far more important than the source of the natural gas.« less

Life cycle water consumption for shale gas and conventional natural gas.

PubMed

Clark, Corrie E; Horner, Robert M; Harto, Christopher B

2013-10-15

Shale gas production represents a large potential source of natural gas for the nation. The scale and rapid growth in shale gas development underscore the need to better understand its environmental implications, including water consumption. This study estimates the water consumed over the life cycle of conventional and shale gas production, accounting for the different stages of production and for flowback water reuse (in the case of shale gas). This study finds that shale gas consumes more water over its life cycle (13-37 L/GJ) than conventional natural gas consumes (9.3-9.6 L/GJ). However, when used as a transportation fuel, shale gas consumes significantly less water than other transportation fuels. When used for electricity generation, the combustion of shale gas adds incrementally to the overall water consumption compared to conventional natural gas. The impact of fuel production, however, is small relative to that of power plant operations. The type of power plant where the natural gas is utilized is far more important than the source of the natural gas.

Hepatitis C virus replicons: dinosaurs still in business?

PubMed Central

Woerz, I; Lohmann, V; Bartenschlager, R

2009-01-01

Since the molecular cloning of the hepatitis C virus (HCV) genome for the first time in 1989, there has been tremendous progress in our understanding of the multiple facets of the replication cycle of this virus. Key to this progress has been the development of systems to propagate the virus in cell culture, which turned out to be a notoriously difficult task. A major breakthrough has been the construction of subgenomic replicons that self-amplify in cultured human hepatoma cells. These RNAs recapitulate the intracellular steps of the HCV replication cycle and have been instrumental to decipher details of the RNA amplification steps including the identification of key host cell factors. However, reproduction of the complete viral replication cycle only became possible with the advent of a particular molecular HCV clone designated JFH-1 that replicates to very high levels and supports the production of infectious virus particles. The availability of this new culture system raises the question, whether the use of replicons is still justified. In this review, we will discuss the pros and cons of both systems.

Understanding the life cycle surface land requirements of natural gas-fired electricity

NASA Astrophysics Data System (ADS)

Jordaan, Sarah M.; Heath, Garvin A.; Macknick, Jordan; Bush, Brian W.; Mohammadi, Ehsan; Ben-Horin, Dan; Urrea, Victoria; Marceau, Danielle

2017-10-01

The surface land use of fossil fuel acquisition and utilization has not been well characterized, inhibiting consistent comparisons of different electricity generation technologies. Here we present a method for robust estimation of the life cycle land use of electricity generated from natural gas through a case study that includes inventories of infrastructure, satellite imagery and well-level production. Approximately 500 sites in the Barnett Shale of Texas were sampled across five life cycle stages (production, gathering, processing, transmission and power generation). Total land use (0.62 m2 MWh-1, 95% confidence intervals ±0.01 m2 MWh-1) was dominated by midstream infrastructure, particularly pipelines (74%). Our results were sensitive to power plant heat rate (85-190% of the base case), facility lifetime (89-169%), number of wells per site (16-100%), well lifetime (92-154%) and pipeline right of way (58-142%). When replicated for other gas-producing regions and different fuels, our approach offers a route to enable empirically grounded comparisons of the land footprint of energy choices.

Construction of a century solar chromosphere data set for solar activity related research

NASA Astrophysics Data System (ADS)

Lin, Ganghua; Wang, Xiao Fan; Yang, Xiao; Liu, Suo; Zhang, Mei; Wang, Haimin; Liu, Chang; Xu, Yan; Tlatov, Andrey; Demidov, Mihail; Borovik, Aleksandr; Golovko, Aleksey

2017-06-01

This article introduces our ongoing project "Construction of a Century Solar Chromosphere Data Set for Solar Activity Related Research". Solar activities are the major sources of space weather that affects human lives. Some of the serious space weather consequences, for instance, include interruption of space communication and navigation, compromising the safety of astronauts and satellites, and damaging power grids. Therefore, the solar activity research has both scientific and social impacts. The major database is built up from digitized and standardized film data obtained by several observatories around the world and covers a time span of more than 100 years. After careful calibration, we will develop feature extraction and data mining tools and provide them together with the comprehensive database for the astronomical community. Our final goal is to address several physical issues: filament behavior in solar cycles, abnormal behavior of solar cycle 24, large-scale solar eruptions, and sympathetic remote brightenings. Significant signs of progress are expected in data mining algorithms and software development, which will benefit the scientific analysis and eventually advance our understanding of solar cycles.

Effect of SPM-based cleaning POR on EUV mask performance

NASA Astrophysics Data System (ADS)

Choi, Jaehyuck; Lee, Han-shin; Yoon, Jinsang; Shimomura, Takeya; Friz, Alex; Montgomery, Cecilia; Ma, Andy; Goodwin, Frank; Kang, Daehyuk; Chung, Paul; Shin, Inkyun; Cho, H.

2011-11-01

EUV masks include many different layers of various materials rarely used in optical masks, and each layer of material has a particular role in enhancing the performance of EUV lithography. Therefore, it is crucial to understand how the mask quality and patterning performance can change during mask fabrication, EUV exposure, maintenance cleaning, shipping, or storage. The fact that a pellicle is not used to protect the mask surface in EUV lithography suggests that EUV masks may have to undergo more cleaning cycles during their lifetime. More frequent cleaning, combined with the adoption of new materials for EUV masks, necessitates that mask manufacturers closely examine the performance change of EUV masks during cleaning process. We have investigated EUV mask quality and patterning performance during 30 cycles of Samsung's EUV mask SPM-based cleaning and 20 cycles of SEMATECH ADT exposure. We have observed that the quality and patterning performance of EUV masks does not significantly change during these processes except mask pattern CD change. To resolve this issue, we have developed an acid-free cleaning POR and substantially improved EUV mask film loss compared to the SPM-based cleaning POR.

A dual-color marker system for in vivo visualization of cell cycle progression in Arabidopsis.

PubMed

Yin, Ke; Ueda, Minako; Takagi, Hitomi; Kajihara, Takehiro; Sugamata Aki, Shiori; Nobusawa, Takashi; Umeda-Hara, Chikage; Umeda, Masaaki

2014-11-01

Visualization of the spatiotemporal pattern of cell division is crucial to understand how multicellular organisms develop and how they modify their growth in response to varying environmental conditions. The mitotic cell cycle consists of four phases: S (DNA replication), M (mitosis and cytokinesis), and the intervening G1 and G2 phases; however, only G2/M-specific markers are currently available in plants, making it difficult to measure cell cycle duration and to analyze changes in cell cycle progression in living tissues. Here, we developed another cell cycle marker that labels S-phase cells by manipulating Arabidopsis CDT1a, which functions in DNA replication origin licensing. Truncations of the CDT1a coding sequence revealed that its carboxy-terminal region is responsible for proteasome-mediated degradation at late G2 or in early mitosis. We therefore expressed this region as a red fluorescent protein fusion protein under the S-specific promoter of a histone 3.1-type gene, HISTONE THREE RELATED2 (HTR2), to generate an S/G2 marker. Combining this marker with the G2/M-specific CYCB1-GFP marker enabled us to visualize both S to G2 and G2 to M cell cycle stages, and thus yielded an essential tool for time-lapse imaging of cell cycle progression. The resultant dual-color marker system, Cell Cycle Tracking in Plant Cells (Cytrap), also allowed us to identify root cells in the last mitotic cell cycle before they entered the endocycle. Our results demonstrate that Cytrap is a powerful tool for in vivo monitoring of the plant cell cycle, and thus for deepening our understanding of cell cycle regulation in particular cell types during organ development. © 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.

Chinese and Australian children's understandings of the Earth: a cross cultural study of conceptual development

NASA Astrophysics Data System (ADS)

Tao, Ying; Oliver, Mary; Venville, Grady

2013-06-01

The purpose of this study was to explore Chinese and Australian primary children's conceptual understandings of the Earth. The research was conducted in the interpretive paradigm and was designed to be descriptive with comparative and cross sectional elements. Participants were Year 3 and Year 6 children from three schools in Hunan Province, central south China ( n = 38) and Year 3 and Year 6 children from three schools in Western Australia ( n = 36). In-depth interviews including drawings were carried out to explore the participants' conceptual understandings of the Earth's shape, gravity, day/night cycle and seasons. The results showed that, regardless of different cultures, children from the same year group constructed similar concepts about the Earth. The Year 3 children were more likely than the Year 6 children to demonstrate intuitive conceptions of a round and flat Earth. The Year 6 children were more likely to demonstrate consistent understandings of a spherical Earth. The findings supported the universality of entrenched presuppositions hypothesis. Cultural mediation was found to have a subtle impact on children's understanding of the Earth. A model of conceptual development is proposed.

Ocean acidification postcards

USGS Publications Warehouse

Schreppel, Heather A.; Cimitile, Matthew J.

2011-01-01

The U.S. Geological Survey (USGS) is conducting research on ocean acidification in polar, temperate, subtropical, and tropical regions including the Arctic, West Florida Shelf, and the Caribbean. Project activities include field assessment, experimental laboratory studies, and evaluation of existing data. The USGS is participating in international and interagency working groups to develop research strategies to increase understanding of the global implications of ocean acidification. Research strategies include new approaches for seawater chemistry observation and modeling, assessment of physiological effects on organisms, changes in marine ecosystem structure, new technologies, and information resources. These postcards highlight ongoing USGS research efforts in ocean acidification and carbon cycling in marine and coastal ecosystems in three different regions: polar, temperate, and tropical. To learn more about ocean acidification visit: http://coastal.er.usgs.gov/ocean-acidification/.

Dynamic ubiquitin signaling in cell cycle regulation

PubMed Central

Gilberto, Samuel

2017-01-01

The cell division cycle is driven by a collection of enzymes that coordinate DNA duplication and separation, ensuring that genomic information is faithfully and perpetually maintained. The activity of the effector proteins that perform and coordinate these biological processes oscillates by regulated expression and/or posttranslational modifications. Ubiquitylation is a cardinal cellular modification and is long known for driving cell cycle transitions. In this review, we emphasize emerging concepts of how ubiquitylation brings the necessary dynamicity and plasticity that underlie the processes of DNA replication and mitosis. New studies, often focusing on the regulation of chromosomal proteins like DNA polymerases or kinetochore kinases, are demonstrating that ubiquitylation is a versatile modification that can be used to fine-tune these cell cycle events, frequently through processes that do not involve proteasomal degradation. Understanding how the increasing variety of identified ubiquitin signals are transduced will allow us to develop a deeper mechanistic perception of how the multiple factors come together to faithfully propagate genomic information. Here, we discuss these and additional conceptual challenges that are currently under study toward understanding how ubiquitin governs cell cycle regulation. PMID:28684425

Dynamic ubiquitin signaling in cell cycle regulation.

PubMed

Gilberto, Samuel; Peter, Matthias

2017-08-07

The cell division cycle is driven by a collection of enzymes that coordinate DNA duplication and separation, ensuring that genomic information is faithfully and perpetually maintained. The activity of the effector proteins that perform and coordinate these biological processes oscillates by regulated expression and/or posttranslational modifications. Ubiquitylation is a cardinal cellular modification and is long known for driving cell cycle transitions. In this review, we emphasize emerging concepts of how ubiquitylation brings the necessary dynamicity and plasticity that underlie the processes of DNA replication and mitosis. New studies, often focusing on the regulation of chromosomal proteins like DNA polymerases or kinetochore kinases, are demonstrating that ubiquitylation is a versatile modification that can be used to fine-tune these cell cycle events, frequently through processes that do not involve proteasomal degradation. Understanding how the increasing variety of identified ubiquitin signals are transduced will allow us to develop a deeper mechanistic perception of how the multiple factors come together to faithfully propagate genomic information. Here, we discuss these and additional conceptual challenges that are currently under study toward understanding how ubiquitin governs cell cycle regulation. © 2017 Gilberto and Peter.

Necessity and approach to integrated nanomaterial legislation and governance.

PubMed

Wang, Jiafan; Gerlach, John D; Savage, Nora; Cobb, George P

2013-01-01

Nanotechnology is one of the most promising technologies to emerge in recent decades. Materials that are specially engineered to have at least one dimension that is no larger than 100 nm are now continuously manufactured and incorporated as critical components of different products that people use daily. While we are taking advantage of nanomaterials (NMs) and nano-products, they may pose a risk to humans and the broader environment. Some types of fibrous NMs such as carbon nanotubes and nano-fibers may present a risk similar to that of asbestos. Some carbon or metal based NMs may threaten the environment due to their bioaccumulative nature within food webs. In order to prevent future adverse effects from products or byproducts of nanotechnology, we suggest an integrated multi-faceted approach which includes an integrated regulation that is based upon life cycle assessment, empirically derived risk assessment. Advanced research that fills the knowledge gap regarding the understanding of NMs in scientific and social norms will be helpful in a full life cycle assessment of NMs. Emphasizing nanotechnology education to the public for an increased understanding and participation associated with media coverage will finally draw governments' attention with an integrated legislation to be instituted. Developing the optimal mix of these tools, including research, public education, media coverage, integrated legislation, will be significant to proactively manage the complexity of nanotechnology and prevent any undesirable effect due to the NMs exposure. Copyright © 2012 Elsevier B.V. All rights reserved.

Global volcanic emissions: budgets, plume chemistry and impacts

NASA Astrophysics Data System (ADS)

Mather, T. A.

2012-12-01

Over the past few decades our understanding of global volcanic degassing budgets, plume chemistry and the impacts of volcanic emissions on our atmosphere and environment has been revolutionized. Global volcanic emissions budgets are needed if we are to make effective use of regional and global atmospheric models in order to understand the consequences of volcanic degassing on global environmental evolution. Traditionally volcanic SO2 budgets have been the best constrained but recent efforts have seen improvements in the quantification of the budgets of other environmentally important chemical species such as CO2, the halogens (including Br and I) and trace metals (including measurements relevant to trace metal atmospheric lifetimes and bioavailability). Recent measurements of reactive trace gas species in volcanic plumes have offered intriguing hints at the chemistry occurring in the hot environment at volcanic vents and during electrical discharges in ash-rich volcanic plumes. These reactive trace species have important consequences for gas plume chemistry and impacts, for example, in terms of the global fixed nitrogen budget, volcanically induced ozone destruction and particle fluxes to the atmosphere. Volcanically initiated atmospheric chemistry was likely to have been particularly important before biological (and latterly anthropogenic) processes started to dominate many geochemical cycles, with important consequences in terms of the evolution of the nitrogen cycle and the role of particles in modulating the Earth's climate. There are still many challenges and open questions to be addressed in this fascinating area of science.

Regulation of TBK1 activity by Optineurin contributes to cell cycle-dependent expression of the interferon pathway.

PubMed

Weil, Robert; Laplantine, Emmanuel; Génin, Pierre

2016-06-01

The innate immune system has evolved to detect and neutralize viral invasions. Triggering of this defense mechanism relies on the production and secretion of soluble factors that stimulate intracellular antiviral defense mechanisms. The Tank Binding Kinase 1 (TBK1) is a serine/threonine kinase in the innate immune signaling pathways including the antiviral response and the host defense against cytosolic infection by bacteries. Given the critical roles of TBK1, important regulatory mechanisms are required to regulate its activity. Among these, Optineurin (Optn) was shown to negatively regulate the interferon response, in addition to its important role in membrane trafficking, protein secretion, autophagy and cell division. As Optn does not carry any enzymatic activity, its functions depend on its precise subcellular localization and its interaction with other proteins, especially with components of the innate immune pathway. This review highlights advances in our understanding of Optn mechanisms of action with focus on the relationships between Optn and TBK1 and their implication in host defense against pathogens. Specifically, how the antiviral immune system is controlled during the cell cycle by the Optn/TBK1 axis and the physiological consequences of this regulatory mechanism are described. This review may serve to a better understanding of the relationships between the different functions of Optn, including those related to immune responses and its associated pathologies such as primary open-angle glaucoma, amyotrophic lateral sclerosis and Paget's disease of bone. Copyright © 2016 Elsevier Ltd. All rights reserved.

The role of life cycle processes on phytoplankton spring bloom composition: a modelling study applied to the Gulf of Finland

NASA Astrophysics Data System (ADS)

Lee, Soonmi; Hofmeister, Richard; Hense, Inga

2018-02-01

Diatoms are typical representatives of the spring bloom worldwide. In several parts of the Baltic Sea, however, cold-water dinoflagellates such as Biecheleria baltica have become dominant during the past decades. We have investigated the mechanisms behind this trend by using an ecosystem model which includes the life cycles of three main phytoplankton groups (diatoms, dinoflagellates and cyanobacteria). Coupled to a water column model we have applied the model system for the period 1981-2010 to the Gulf of Finland. In agreement with observations, the model results show an increasing trend in the proportion of dinoflagellates in the Gulf of Finland. Temperature and life cycle-related processes explain the relative increase of dinoflagellates and corresponding decrease of diatoms. Warming over the 30 years has enabled a head start of dinoflagellates by reducing the time lag between germination and growth of vegetative cells. Although diatoms have a much higher growth rate, they cannot compete with the high dinoflagellate concentrations that result from the inoculum. Diatoms will only dominate in years when the inoculum concentrations of dinoflagellates or the temperatures are low. Overall, the model results suggest that consideration of life cycle dynamics of competing phytoplankton groups may be crucial to understand trends and shifts in community composition.

Real-time monitoring of acoustic linear and nonlinear behavior of titanium alloys during low-cycle fatigue and high-cycle fatigue

NASA Astrophysics Data System (ADS)

Frouin, Jerome; Sathish, Shamachary; Na, Jeong K.

2000-05-01

An in-situ technique to measure sound velocity, ultrasonic attenuation and acoustic nonlinear property has been developed for characterization and early detection of fatigue damage in aerospace materials. For this purpose we have developed a computer software and measurement technique including hardware for the automation of the measurement. New transducer holder and special grips are designed. The automation has allowed us to test the long-term stability of the electronics over a period of time and so proof of the linearity of the system. Real-time monitoring of the material nonlinearity has been performed on dog-bone specimens from zero fatigue all the way to the final fracture under low-cycle fatigue test condition (LCF) and high-cycle test condition (HCF). Real-time health monitoring of the material can greatly contribute to the understanding of material behavior under cyclic loading. Interpretation of the results show that correlation exist between the slope of the curve described by the material nonlinearity and the life of the component. This new methodology was developed with an objective to predict the initiation of fatigue microcracks, and to detect, in-situ fatigue crack initiation as well as to quantify early stages of fatigue damage.

Coupling a Supercritical Carbon Dioxide Brayton Cycle to a Helium-Cooled Reactor.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Middleton, Bobby; Pasch, James Jay; Kruizenga, Alan Michael

2016-01-01

This report outlines the thermodynamics of a supercritical carbon dioxide (sCO 2) recompression closed Brayton cycle (RCBC) coupled to a Helium-cooled nuclear reactor. The baseline reactor design for the study is the AREVA High Temperature Gas-Cooled Reactor (HTGR). Using the AREVA HTGR nominal operating parameters, an initial thermodynamic study was performed using Sandia's deterministic RCBC analysis program. Utilizing the output of the RCBC thermodynamic analysis, preliminary values of reactor power and of Helium flow rate through the reactor were calculated in Sandia's HelCO 2 code. Some research regarding materials requirements was then conducted to determine aspects of corrosion related tomore » both Helium and to sCO 2 , as well as some mechanical considerations for pressures and temperatures that will be seen by the piping and other components. This analysis resulted in a list of materials-related research items that need to be conducted in the future. A short assessment of dry heat rejection advantages of sCO 2> Brayton cycles was also included. This assessment lists some items that should be investigated in the future to better understand how sCO 2 Brayton cycles and nuclear can maximally contribute to optimizing the water efficiency of carbon free power generation« less

Pleistocene glacial cycles drive isolation, gene flow and speciation in the high-elevation Andes.

PubMed

Nevado, Bruno; Contreras-Ortiz, Natalia; Hughes, Colin; Filatov, Dmitry A

2018-06-04

Mountain ranges are amongst the most species-rich habitats, with many large and rapid evolutionary radiations. The tempo and mode of diversification in these systems are key unanswered questions in evolutionary biology. Here we study the Andean Lupinus radiation to understand the processes driving very rapid diversification in montane systems. We use genomic and transcriptomic data of multiple species and populations, and apply phylogenomic and demographic analyses to test whether diversification proceeded without interspecific gene flow - as expected if Andean orogeny and geographic isolation were the main drivers of diversification - or if diversification was accompanied by gene flow, in which case other processes were probably involved. We uncover several episodes of gene flow between species, including very recent events likely to have been prompted by changes in habitat connectivity during Pleistocene glacial cycles. Furthermore, we find that gene flow between species was heterogeneously distributed across the genome. We argue that exceptionally fast diversification of Andean Lupinus was partly a result of Late Pleistocene glacial cycles, with associated cycles of expansion and contraction driving geographic isolation or secondary contact of species. Furthermore, heterogeneous gene flow across the genome suggests a role for selection and ecological speciation in rapid diversification in this system. © 2018 The Authors New Phytologist © 2018 New Phytologist Trust.

Computation Molecular Kinetics Model of HZE Induced Cell Cycle Arrest

NASA Technical Reports Server (NTRS)

Cucinotta, Francis A.; Ren, Lei

2004-01-01

Cell culture models play an important role in understanding the biological effectiveness of space radiation. High energy and charge (HZE) ions produce prolonged cell cycle arrests at the G1/S and G2/M transition points in the cell cycle. A detailed description of these phenomena is needed to integrate knowledge of the expression of DNA damage in surviving cells, including the determination of relative effectiveness factors between different types of radiation that produce differential types of DNA damage and arrest durations. We have developed a hierarchical kinetics model that tracks the distribution of cells in various cell phase compartments (early G1, late G1, S, G2, and M), however with transition rates that are controlled by rate-limiting steps in the kinetics of cyclin-cdk's interactions with their families of transcription factors and inhibitor molecules. The coupling of damaged DNA molecules to the downstream cyclin-cdk inhibitors is achieved through a description of the DNA-PK and ATM signaling pathways. For HZE irradiations we describe preliminary results, which introduce simulation of the stochastic nature of the number of direct particle traversals per cell in the modulation of cyclin-cdk and cell cycle population kinetics. Comparison of the model to data for fibroblast cells irradiated photons or HZE ions are described.

Integrating life-cycle environmental and economic assessment with transportation and land use planning.

PubMed

Chester, Mikhail V; Nahlik, Matthew J; Fraser, Andrew M; Kimball, Mindy A; Garikapati, Venu M

2013-01-01

The environmental outcomes of urban form changes should couple life-cycle and behavioral assessment methods to better understand urban sustainability policy outcomes. Using Phoenix, Arizona light rail as a case study, an integrated transportation and land use life-cycle assessment (ITLU-LCA) framework is developed to assess the changes to energy consumption and air emissions from transit-oriented neighborhood designs. Residential travel, commercial travel, and building energy use are included and the framework integrates household behavior change assessment to explore the environmental and economic outcomes of policies that affect infrastructure. The results show that upfront environmental and economic investments are needed (through more energy-intense building materials for high-density structures) to produce long run benefits in reduced building energy use and automobile travel. The annualized life-cycle benefits of transit-oriented developments in Phoenix can range from 1.7 to 230 Gg CO2e depending on the aggressiveness of residential density. Midpoint impact stressors for respiratory effects and photochemical smog formation are also assessed and can be reduced by 1.2-170 Mg PM10e and 41-5200 Mg O3e annually. These benefits will come at an additional construction cost of up to $410 million resulting in a cost of avoided CO2e at $16-29 and household cost savings.

Life Cycle Assessment of Domestic and Agricultural Rainwater Harvesting Systems

EPA Science Inventory

To further understanding of the environmental implications of rainwater harvesting and its water savings potential relative to conventional U.S. water delivery infrastructure, we present a method to perform life cycle assessment of domestic rainwater harvesting (DRWH) and agricul...

Fever versus Fever: the role of host and vector susceptibility and interspecific competition in shaping the current and future distributions of the sylvatic cycles of dengue virus and yellow fever virus

PubMed Central

Hanley, Kathryn A.; Monath, Thomas P.; Weaver, Scott C.; Rossi, Shannan L.; Richman, Rebecca L.; Vasilakis, Nikos

2013-01-01

Two different species of flaviviruses, dengue virus (DENV) and yellow fever virus (YFV), that originated in sylvatic cycles maintained in non-human primates and forest-dwelling mosquitoes have emerged repeatedly into sustained human-to-human transmission by Aedes aegypti mosquitoes. Sylvatic cycles of both viruses remain active, and where the two viruses overlap in West Africa they utilize similar suites of monkeys and Aedes mosquitoes. These extensive similarities render the differences in the biogeography and epidemiology of the two viruses all the more striking. First, the sylvatic cycle of YFV originated in Africa and was introduced into the New World, probably as a result of the slave trade, but is absent in Asia; in contrast, sylvatic DENV likely originated in Asia and has spread to Africa but not to the New World. Second, while sylvatic YFV can emerge into extensive urban outbreaks in humans, these invariably die out, whereas four different types of DENV have established human transmission cycles that are ecologically and evolutionarily distinct from their sylvatic ancestors. Finally, transmission of YFV among humans has been documented only in Africa and the Americas, whereas DENV is transmitted among humans across most of the range of competent Aedes vectors, which in the last decade has included every continent save Antarctica. This review summarizes current understanding of sylvatic transmission cycles of YFV and DENV, considers possible explanations for their disjunct distributions, and speculates on the potential consequences of future establishment of a sylvatic cycle of DENV in the Americas. PMID:23523817

A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages.

PubMed

Pérez-Porro, A R; Navarro-Gómez, D; Uriz, M J; Giribet, G

2013-05-01

Sponges can be dominant organisms in many marine and freshwater habitats where they play essential ecological roles. They also represent a key group to address important questions in early metazoan evolution. Recent approaches for improving knowledge on sponge biological and ecological functions as well as on animal evolution have focused on the genetic toolkits involved in ecological responses to environmental changes (biotic and abiotic), development and reproduction. These approaches are possible thanks to newly available, massive sequencing technologies-such as the Illumina platform, which facilitate genome and transcriptome sequencing in a cost-effective manner. Here we present the first NGS (next-generation sequencing) approach to understanding the life cycle of an encrusting marine sponge. For this we sequenced libraries of three different life cycle stages of the Mediterranean sponge Crella elegans and generated de novo transcriptome assemblies. Three assemblies were based on sponge tissue of a particular life cycle stage, including non-reproductive tissue, tissue with sperm cysts and tissue with larvae. The fourth assembly pooled the data from all three stages. By aggregating data from all the different life cycle stages we obtained a higher total number of contigs, contigs with blast hit and annotated contigs than from one stage-based assemblies. In that multi-stage assembly we obtained a larger number of the developmental regulatory genes known for metazoans than in any other assembly. We also advance the differential expression of selected genes in the three life cycle stages to explore the potential of RNA-seq for improving knowledge on functional processes along the sponge life cycle. © 2013 Blackwell Publishing Ltd.

Fever versus fever: the role of host and vector susceptibility and interspecific competition in shaping the current and future distributions of the sylvatic cycles of dengue virus and yellow fever virus.

PubMed

Hanley, Kathryn A; Monath, Thomas P; Weaver, Scott C; Rossi, Shannan L; Richman, Rebecca L; Vasilakis, Nikos

2013-10-01

Two different species of flaviviruses, dengue virus (DENV) and yellow fever virus (YFV), that originated in sylvatic cycles maintained in non-human primates and forest-dwelling mosquitoes have emerged repeatedly into sustained human-to-human transmission by Aedes aegypti mosquitoes. Sylvatic cycles of both viruses remain active, and where the two viruses overlap in West Africa they utilize similar suites of monkeys and Aedes mosquitoes. These extensive similarities render the differences in the biogeography and epidemiology of the two viruses all the more striking. First, the sylvatic cycle of YFV originated in Africa and was introduced into the New World, probably as a result of the slave trade, but is absent in Asia; in contrast, sylvatic DENV likely originated in Asia and has spread to Africa but not to the New World. Second, while sylvatic YFV can emerge into extensive urban outbreaks in humans, these invariably die out, whereas four different types of DENV have established human transmission cycles that are ecologically and evolutionarily distinct from their sylvatic ancestors. Finally, transmission of YFV among humans has been documented only in Africa and the Americas, whereas DENV is transmitted among humans across most of the range of competent Aedes vectors, which in the last decade has included every continent save Antarctica. This review summarizes current understanding of sylvatic transmission cycles of YFV and DENV, considers possible explanations for their disjunct distributions, and speculates on the potential consequences of future establishment of a sylvatic cycle of DENV in the Americas. Copyright © 2013 Elsevier B.V. All rights reserved.

Breaking the Conflict Cycle: Incorporating Stability Operations into a Cycle Framework

DTIC Science & Technology

2008-06-13

conflict cycle – early warning, conflict prevention, conflict management , and post-conflict reconstruction retain all the basic principles of FM 3-0...accepted in the field of international relations and is instrumental for understanding how conflict prevention, conflict management , and post-conflict...Conflict Prevention and Conflict Management in Northeast Asia. Retrieved 25 February 2009 from www.silkroadstudies.org/new/docs/beijing

Student Development of Model-Based Reasoning about Carbon Cycling and Climate Change in a Socio-Scientific Issues Unit

ERIC Educational Resources Information Center

Zangori, Laura; Peel, Amanda; Kinslow, Andrew; Friedrichsen, Patricia; Sadler, Troy D.

2017-01-01

Carbon cycling is a key natural system that requires robust science literacy to understand how and why climate change is occurring. Studies show that students tend to compartmentalize carbon movement within plants and animals and are challenged to make sense of how carbon cycles on a global scale. Studies also show that students hold faulty models…

Molecular Signatures of Immune Activation and Epithelial Barrier Remodeling Are Enhanced during the Luteal Phase of the Menstrual Cycle: Implications for HIV Susceptibility.

PubMed

Birse, Kenzie; Arnold, Kelly B; Novak, Richard M; McCorrister, Stuart; Shaw, Souradet; Westmacott, Garrett R; Ball, Terry B; Lauffenburger, Douglas A; Burgener, Adam

2015-09-01

The variable infectivity and transmissibility of HIV/SHIV has been recently associated with the menstrual cycle, with particular susceptibility observed during the luteal phase in nonhuman primate models and ex vivo human explant cultures, but the mechanism is poorly understood. Here, we performed an unbiased, mass spectrometry-based proteomic analysis to better understand the mucosal immunological processes underpinning this observed susceptibility to HIV infection. Cervicovaginal lavage samples (n = 19) were collected, characterized as follicular or luteal phase using days since last menstrual period, and analyzed by tandem mass spectrometry. Biological insights from these data were gained using a spectrum of computational methods, including hierarchical clustering, pathway analysis, gene set enrichment analysis, and partial least-squares discriminant analysis with LASSO feature selection. Of the 384 proteins identified, 43 were differentially abundant between phases (P < 0.05, ≥2-fold change). Cell-cell adhesion proteins and antiproteases were reduced, and leukocyte recruitment (interleukin-8 pathway, P = 1.41E-5) and extravasation proteins (P = 5.62E-4) were elevated during the luteal phase. LASSO/PLSDA identified a minimal profile of 18 proteins that best distinguished the luteal phase. This profile included cytoskeletal elements and proteases known to be involved in cellular movement. Gene set enrichment analysis associated CD4(+) T cell and neutrophil gene set signatures with the luteal phase (P < 0.05). Taken together, our findings indicate a strong association between proteins involved in tissue remodeling and leukocyte infiltration with the luteal phase, which may represent potential hormone-associated mechanisms of increased susceptibility to HIV. Recent studies have discovered an enhanced susceptibility to HIV infection during the progesterone-dominant luteal phase of the menstrual cycle. However, the mechanism responsible for this enhanced susceptibility has not yet been determined. Understanding the source of this vulnerability will be important for designing efficacious HIV prevention technologies for women. Furthermore, these findings may also be extrapolated to better understand the impact of exogenous hormone application, such as the use of hormonal contraceptives, on HIV acquisition risk. Hormonal contraceptives are the most widely used contraceptive method in sub-Saharan Africa, the most HIV-burdened area of the world. For this reason, research conducted to better understand how hormones impact host immunity and susceptibility factors important for HIV infection is a global health priority. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Component-specific dynamics of riverine mangrove CO2 efflux in the Florida coastal Everglades

USGS Publications Warehouse

Troxler, Tiffany G.; Barr, Jordan G.; Fuentes, Jose D.; Engel, Victor C.; Anderson, Gordon H.; Sanchez, Christopher; Lagomosino, David; Price, Rene; Davis, Stephen E.

2015-01-01

Carbon cycling in mangrove forests represents a significant portion of the coastal wetland carbon (C) budget across the latitudes of the tropics and subtropics. Previous research suggests fluctuations in tidal inundation, temperature and salinity can influence forest metabolism and C cycling. Carbon dioxide (CO2) from respiration that occurs from below the canopy is contributed from different components. In this study, we investigated variation in CO2 flux among different below-canopy components (soil, leaf litter, course woody debris, soil including pneumatophores, prop roots, and surface water) in a riverine mangrove forest of Shark River Slough estuary, Everglades National Park (Florida, USA). The range in CO2 flux from different components exceeded that measured among sites along the oligohaline-saline gradient. Black mangrove (Avicennia germinans) pneumatophores contributed the largest average CO2 flux. Over a narrow range of estuarine salinity (25–35 practical salinity units (PSU)), increased salinity resulted in lower CO2 flux to the atmosphere. Tidal inundation reduced soil CO2 flux overall but increased the partial pressure of CO2 (pCO2) observed in the overlying surface water upon flooding. Higher pCO2 in surface water is then subject to tidally driven export, largely as HCO3. Integration and scaling of CO2 flux rates to forest scale allowed for improved understanding of the relative contribution of different below-canopy components to mangrove forest ecosystem respiration (ER). Summing component CO2fluxes suggests a more significant contribution of below-canopy respiration to ER than previously considered. An understanding of below-canopy CO2 component fluxes and their contributions to ER can help to elucidate how C cycling will change with discrete disturbance events (e.g., hurricanes) and long-term change, including sea-level rise, and potential impact mangrove forests. As such, key controls on below-canopy ER must be taken into consideration when developing and modeling mangrove forest C budgets.

Linking the response of bacterial populations to plant development through analysis of rhizosphere-competence traits of soil bacteria

NASA Astrophysics Data System (ADS)

Cho, H. J.; Karaoz, U.; Zhalnina, K.; Firestone, M. K.; Brodie, E.

2016-12-01

A growing plant root exudes changing combinations of compounds including root litter and other detritus throughout its developmental stages, providing a major source of organic C for rhizosphere bacteria. Clear patterns of microbial succession have been observed in the rhizosphere of a number of plants. These patterns of microbial succession are likely key to the processing of soil organic carbon and nutrient recycling. What is less well understood are the microbial traits, or combinations of traits, selected for during plant development. Are these traits or trait-combinations conserved, and is phylogeny a useful integrator of traits? Understanding the mechanisms underlying ecological succession would enable improved prediction of future rhizosphere states and consequences for C and nutrient cycles. In this study, we resolve the responses of rhizosphere bacteria at strain-level during plant (Avena fatua) developmental stages using both isolation and metagenomic approaches. Metagenome reads from bulk and rhizosphere soils were mapped to the genomes of thirty nine bacterial isolates numerically abundant ( 0.5% in relative abundance) and phylogenetically representative of these soils, and also to ninety six metagenome-derived genome bins. Analysis of temporal coverage patterns demonstrate that bacteria can be classified as positive and negative rhizosphere responders, with traits associated with root exudate utilization being important. Significant strain level diversity was observed and variance in the temporal coverage patterns further distinguished closely related strains of the same genera. For example, while a number of strains from the Bradyrhizobia, Mesorhizobia and Mycobacteria all increased in coverage with root growth, suggesting that recently acquired traits are selected for. Candidate traits distinguishing closely related strains included those related to xylose and other plant cell-wall derived sugar utilization, motility and aromatic organic acid utilization. These combinations of traits act together to influence rhizosphere bacterial succession, and developing linkages to other traits related to carbon and nutrient cycling will be key to understanding the feedbacks between plant response to environmental change and soil biogeochemical cycles.

Modeling greenhouse gas emissions from dairy farms.

PubMed

Rotz, C Alan

2017-11-15

Dairy farms have been identified as an important source of greenhouse gas emissions. Within the farm, important emissions include enteric CH 4 from the animals, CH 4 and N 2 O from manure in housing facilities during long-term storage and during field application, and N 2 O from nitrification and denitrification processes in the soil used to produce feed crops and pasture. Models using a wide range in level of detail have been developed to represent or predict these emissions. They include constant emission factors, variable process-related emission factors, empirical or statistical models, mechanistic process simulations, and life cycle assessment. To fully represent farm emissions, models representing the various emission sources must be integrated to capture the combined effects and interactions of all important components. Farm models have been developed using relationships across the full scale of detail, from constant emission factors to detailed mechanistic simulations. Simpler models, based upon emission factors and empirical relationships, tend to provide better tools for decision support, whereas more complex farm simulations provide better tools for research and education. To look beyond the farm boundaries, life cycle assessment provides an environmental accounting tool for quantifying and evaluating emissions over the full cycle, from producing the resources used on the farm through processing, distribution, consumption, and waste handling of the milk and dairy products produced. Models are useful for improving our understanding of farm processes and their interacting effects on greenhouse gas emissions. Through better understanding, they assist in the development and evaluation of mitigation strategies for reducing emissions and improving overall sustainability of dairy farms. The Authors. Published by the Federation of Animal Science Societies and Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).

The key kinematic determinants of undulatory underwater swimming at maximal velocity.

PubMed

Connaboy, Chris; Naemi, Roozbeh; Brown, Susan; Psycharakis, Stelios; McCabe, Carla; Coleman, Simon; Sanders, Ross

2016-01-01

The optimisation of undulatory underwater swimming is highly important in competitive swimming performance. Nineteen kinematic variables were identified from previous research undertaken to assess undulatory underwater swimming performance. The purpose of the present study was to determine which kinematic variables were key to the production of maximal undulatory underwater swimming velocity. Kinematic data at maximal undulatory underwater swimming velocity were collected from 17 skilled swimmers. A series of separate backward-elimination analysis of covariance models was produced with cycle frequency and cycle length as dependent variables (DVs) and participant as a fixed factor, as including cycle frequency and cycle length would explain 100% of the maximal swimming velocity variance. The covariates identified in the cycle-frequency and cycle-length models were used to form the saturated model for maximal swimming velocity. The final parsimonious model identified three covariates (maximal knee joint angular velocity, maximal ankle angular velocity and knee range of movement) as determinants of the variance in maximal swimming velocity (adjusted-r2 = 0.929). However, when participant was removed as a fixed factor there was a large reduction in explained variance (adjusted r2 = 0.397) and only maximal knee joint angular velocity continued to contribute significantly, highlighting its importance to the production of maximal swimming velocity. The reduction in explained variance suggests an emphasis on inter-individual differences in undulatory underwater swimming technique and/or anthropometry. Future research should examine the efficacy of other anthropometric, kinematic and coordination variables to better understand the production of maximal swimming velocity and consider the importance of individual undulatory underwater swimming techniques when interpreting the data.

The bipolarity of light and dark: A review on Bipolar Disorder and circadian cycles.

PubMed

Abreu, T; Bragança, M

2015-10-01

Bipolar Disorder is characterized by episodes running the full mood spectrum, from mania to depression. Between mood episodes, residual symptoms remain, as sleep alterations, circadian cycle disturbances, emotional deregulation, cognitive impairment and increased risk for comorbidities. The present review intends to reflect about the most recent and relevant information concerning the biunivocal relation between bipolar disorder and circadian cycles. It was conducted a literature search on PubMed database using the search terms "bipolar", "circadian", "melatonin", "cortisol", "body temperature", "Clock gene", "Bmal1 gene", "Per gene", "Cry gene", "GSK3β", "chronotype", "light therapy", "dark therapy", "sleep deprivation", "lithum" and "agomelatine". Search results were manually reviewed, and pertinent studies were selected for inclusion as appropriate. Several studies support the relationship between bipolar disorder and circadian cycles, discussing alterations in melatonin, body temperature and cortisol rhythms; disruption of sleep/wake cycle; variations of clock genes; and chronotype. Some therapeutics for bipolar disorder directed to the circadian cycles disturbances are also discussed, including lithium carbonate, agomelatine, light therapy, dark therapy, sleep deprivation and interpersonal and social rhythm therapy. This review provides a summary of an extensive research for the relevant literature on this theme, not a patient-wise meta-analysis. In the future, it is essential to achieve a better understanding of the relation between bipolar disorder and the circadian system. It is required to establish new treatment protocols, combining psychotherapy, therapies targeting the circadian rhythms and the latest drugs, in order to reduce the risk of relapse and improve affective behaviour. Copyright © 2015 Elsevier B.V. All rights reserved.

Toward full life cycle control: Adding maintenance measurement to the SEL

NASA Technical Reports Server (NTRS)

Rombach, H. Dieter; Ulery, Bradford T.; Valett, Jon D.

1992-01-01

Organization-wide measurement of software products and processes is needed to establish full life cycle control over software products. The Software Engineering Laboratory (SEL)--a joint venture between NASA GSFC, the University of Maryland, and Computer Sciences Corporation--started measurement of software development more than 15 years ago. Recently, the measurement of maintenance was added to the scope of the SEL. In this article, the maintenance measurement program is presented as an addition to the already existing and well-established SEL development measurement program and evaluated in terms of its immediate benefits and long-term improvement potential. Immediate benefits of this program for the SEL include an increased understanding of the maintenance domain, the differences and commonalities between development and maintenance, and the cause-effect relationships between development and maintenance. Initial results from a sample maintenance study are presented to substantiate these benefits. The long-term potential of this program includes the use of maintenance baselines to better plan and manage future projects and to improve development and maintenance practices for future projects wherever warranted.

[A review of the role and function of microbes in coral reef ecosystem].

PubMed

Zhou, Jin; Jin, Hui; Cai, Zhong-Hua

2014-03-01

Coral reef is consisted with several kinds of reef-associated organisms, including coral, fish, benthos, algae and microbes, which is an important marine ecosystem. Coral reef lives in the oligotrophic environment, has very highly primary productivity and net productivity, and is called "tropical rain forest in ocean". In corals, diverse microorganisms exert a significant influence on biogeochemical and ecological processes, including food webs, organism life cycles, and nutrient cycling. With the development of molecular biology, the role of microorganisms in a coral system is becoming more outstanding. In this article, we reviewed current understanding on 1) the onset of coral-bacterial associations; 2) the characteristics of microbes in coral (specificity, plasticity and co-evolution) ; 3) the role and signal regulation of microbes in the health and disease of coral; and 4) the response mechanism of microbes for global climatic change and consequent effects, such as temperature rise, ocean acidification and eutrophication. The aims of this article were to summarize the latest theories and achievements, clear the mechanism of microbial ecology in coral reefs and provide a theoretical reference for better protection and maintaining the coral's biodiversity.

Ground-level climate at a peatland wind farm in Scotland is affected by wind turbine operation

NASA Astrophysics Data System (ADS)

Armstrong, Alona; Burton, Ralph R.; Lee, Susan E.; Mobbs, Stephen; Ostle, Nicholas; Smith, Victoria; Waldron, Susan; Whitaker, Jeanette

2016-04-01

The global drive to produce low-carbon energy has resulted in an unprecedented deployment of onshore wind turbines, representing a significant land use change for wind energy generation with uncertain consequences for local climatic conditions and the regulation of ecosystem processes. Here, we present high-resolution data from a wind farm collected during operational and idle periods that shows the wind farm affected several measures of ground-level climate. Specifically, we discovered that operational wind turbines raised air temperature by 0.18 °C and absolute humidity (AH) by 0.03 g m-3 during the night, and increased the variability in air, surface and soil temperature throughout the diurnal cycle. Further, the microclimatic influence of turbines on air temperature and AH decreased logarithmically with distance from the nearest turbine. These effects on ground-level microclimate, including soil temperature, have uncertain implications for biogeochemical processes and ecosystem carbon cycling, including soil carbon stocks. Consequently, understanding needs to be improved to determine the overall carbon balance of wind energy.

Seeing the light: Applications of in situ optical measurements for understanding DOM dynamics in river systems (Invited)

NASA Astrophysics Data System (ADS)

Pellerin, B. A.; Bergamaschi, B. A.; Downing, B. D.; Saraceno, J.; Fleck, J.; Shanley, J. B.; Aiken, G.; Boss, E.; Fujii, R.

2009-12-01

A critical challenge for understanding the sources, character and cycling of dissolved organic matter (DOM) is making measurements at the time scales in which changes occur in aquatic systems. Traditional approaches for data collection (daily to monthly discrete sampling) are often limited by analytical and field costs, site access and logistical challenges, particularly for long-term sampling at a large number of sites. The ability to make optical measurements of DOM in situ has been known for more than 50 years, but much of the work on in situ DOM absorbance and fluorescence using commercially-available instruments has taken place in the last few years. Here we present several recent examples that highlight the application of in situ measurements for understanding DOM dynamics in riverine systems at intervals of minutes to hours. Examples illustrate the utility of in situ optical sensors for studies of DOM over short-duration events of days to weeks (diurnal cycles, tidal cycles, storm events and snowmelt periods) as well as longer-term continuous monitoring for months to years. We also highlight the application of in situ optical DOM measurements as proxies for constituents that are significantly more difficult and expensive to measure at high frequencies (e.g. methylmercury, trihalomethanes). Relatively simple DOM absorbance and fluorescence measurements made in situ could be incorporated into short and long-term ecological research and monitoring programs, resulting in advanced understanding of organic matter sources, character and cycling in riverine systems.

Prediction/discussion-based learning cycle versus conceptual change text: comparative effects on students' understanding of genetics

NASA Astrophysics Data System (ADS)

khawaldeh, Salem A. Al

2013-07-01

Background and purpose: The purpose of this study was to investigate the comparative effects of a prediction/discussion-based learning cycle (HPD-LC), conceptual change text (CCT) and traditional instruction on 10th grade students' understanding of genetics concepts. Sample: Participants were 112 10th basic grade male students in three classes of the same school located in an urban area. The three classes taught by the same biology teacher were randomly assigned as a prediction/discussion-based learning cycle class (n = 39), conceptual change text class (n = 37) and traditional class (n = 36). Design and method: A quasi-experimental research design of pre-test-post-test non-equivalent control group was adopted. Participants completed the Genetics Concept Test as pre-test-post-test, to examine the effects of instructional strategies on their genetics understanding. Pre-test scores and Test of Logical Thinking scores were used as covariates. Results: The analysis of covariance showed a statistically significant difference between the experimental and control groups in the favor of experimental groups after treatment. However, no statistically significant difference between the experimental groups (HPD-LC versus CCT instruction) was found. Conclusions: Overall, the findings of this study support the use of the prediction/discussion-based learning cycle and conceptual change text in both research and teaching. The findings may be useful for improving classroom practices in teaching science concepts and for the development of suitable materials promoting students' understanding of science.

Vadose zone controls on damping of climate-induced transient recharge fluxes in U.S. agroecosystems

NASA Astrophysics Data System (ADS)

Gurdak, Jason

2017-04-01

Understanding the physical processes in the vadose zone that link climate variability with transient recharge fluxes has particular relevance for the sustainability of groundwater-supported irrigated agriculture and other groundwater-dependent ecosystems. Natural climate variability on interannual to multidecadal timescales has well-documented influence on precipitation, evapotranspiration, soil moisture, infiltration flux, and can augment or diminish human stresses on water resources. Here the behavior and damping depth of climate-induced transient water flux in the vadose zone is explored. The damping depth is the depth in the vadose zone that the flux variation damps to 5% of the land surface variation. Steady-state recharge occurs when the damping depth is above the water table, and transient recharge occurs when the damping depth is below the water table. Findings are presented from major agroecosystems of the United States (U.S.), including the High Plains, Central Valley, California Coastal Basin, and Mississippi Embayment aquifer systems. Singular spectrum analysis (SSA) is used to identify quasi-periodic signals in precipitation and groundwater time series that are coincident with the Arctic Oscillation (AO) (6-12 mo cycle), Pacific/North American oscillation (PNA) (<1-4 yr cycle), El Niño/Southern Oscillation (ENSO) (2-7 yr cycle), North Atlantic Oscillation (NAO) (3-6 yr cycle), Pacific Decadal Oscillation (PDO) (15-30 yr cycle), and Atlantic Multidecadal Oscillation (AMO) (50-70 yr cycle). SSA results indicate that nearly all of the quasi-periodic signals in the precipitation and groundwater levels have a statistically significant lag correlation (95% confidence interval) with the AO, PNA, ENSO, NAO, PDO, and AMO indices. Results from HYDRUS-1D simulations indicate that transient water flux through the vadose zone are controlled by highly nonlinear interactions between mean infiltration flux and infiltration period related to the modes of climate variability and the local soil textures, layering, and depth to the water table. Simulation results for homogeneous profiles generally show that shorter-period climate oscillations, smaller mean fluxes, and finer-grained soil textures generally produce damping depths closer to land surface. Simulation results for layered soil textures indicate more complex responses in the damping depth, including the finding that finer-textured layers in a coarser soil profile generally result in damping depths closer to land surface, while coarser-textured layers in coarser soil profile result in damping depths deeper in the vadose zone. Findings from this study improve understanding of how vadose zone properties influences transient recharge flux and damp climate variability signals in groundwater systems, and have important implications for sustainable management of groundwater resources and coupled agroecosystems under future climate variability and change.

Late Effects in Pediatric High-risk Neuroblastoma Survivors After Intensive Induction Chemotherapy Followed by Myeloablative Consolidation Chemotherapy and Triple Autologous Stem Cell Transplants.

PubMed

Armstrong, Amy E; Danner-Koptik, Karina; Golden, Shannon; Schneiderman, Jennifer; Kletzel, Morris; Reichek, Jennifer; Gosiengfiao, Yasmin

2018-01-01

Multimodal treatment in high-risk neuroblastoma has modestly improved survival; limited data exist on the late effects from these regimens. We report the sequelae of treatment incorporating 3 consecutive cycles of high-dose therapy and autologous stem cell transplants (ASCTs) without the use of total body irradiation (TBI). We reviewed the medical records of 61 patients treated on or following the Chicago Pilot 2 protocol between 1991 and 2008. Of the 25 patients who are alive (41%), 19 had near complete data to report. Specific treatment modalities and therapy-related side effects were collected. Fourteen of these 19 patients (74%) received 3 cycles of high-dose therapy with ASCT; follow-up occurred over a median of 13.9 years (range, 5.8 to 18.8 y). The majority of late effects were endocrine-related, including growth failure, hypothyroidism, and hypogonadism. Patients also developed secondary neoplasms and skeletal deformities. The most frequent sequela was hearing loss, seen in 17/19 patients. We found a high prevalence of various late effects in survivors of high-risk neuroblastoma using a non-TBI-based regimen including 3 cycles of high-dose therapy with ASCTs. As current treatment regimens recommend tandem ASCT without TBI, it is imperative that we understand and monitor for the sequelae from these modalities.

The Root Hair “Infectome” of Medicago truncatula Uncovers Changes in Cell Cycle Genes and Reveals a Requirement for Auxin Signaling in Rhizobial Infection[W][OPEN

PubMed Central

Breakspear, Andrew; Liu, Chengwu; Roy, Sonali; Stacey, Nicola; Rogers, Christian; Trick, Martin; Morieri, Giulia; Mysore, Kirankumar S.; Wen, Jiangqi; Oldroyd, Giles E.D.; Downie, J. Allan

2014-01-01

Nitrogen-fixing rhizobia colonize legume roots via plant-made intracellular infection threads. Genetics has identified some genes involved but has not provided sufficient detail to understand requirements for infection thread development. Therefore, we transcriptionally profiled Medicago truncatula root hairs prior to and during the initial stages of infection. This revealed changes in the responses to plant hormones, most notably auxin, strigolactone, gibberellic acid, and brassinosteroids. Several auxin responsive genes, including the ortholog of Arabidopsis thaliana Auxin Response Factor 16, were induced at infection sites and in nodule primordia, and mutation of ARF16a reduced rhizobial infection. Associated with the induction of auxin signaling genes, there was increased expression of cell cycle genes including an A-type cyclin and a subunit of the anaphase promoting complex. There was also induction of several chalcone O-methyltransferases involved in the synthesis of an inducer of Sinorhizobium meliloti nod genes, as well as a gene associated with Nod factor degradation, suggesting both positive and negative feedback loops that control Nod factor levels during rhizobial infection. We conclude that the onset of infection is associated with reactivation of the cell cycle as well as increased expression of genes required for hormone and flavonoid biosynthesis and that the regulation of auxin signaling is necessary for initiation of rhizobial infection threads. PMID:25527707

Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle

PubMed Central

Gutzwiller, Florence; Carmo, Catarina R.; Miller, Danny E.; Rice, Danny W.; Newton, Irene L. G.; Hawley, R. Scott; Teixeira, Luis; Bergman, Casey M.

2015-01-01

Symbiotic interactions between microbes and their multicellular hosts have manifold biological consequences. To better understand how bacteria maintain symbiotic associations with animal hosts, we analyzed genome-wide gene expression for the endosymbiotic α-proteobacteria Wolbachia pipientis across the entire life cycle of Drosophila melanogaster. We found that the majority of Wolbachia genes are expressed stably across the D. melanogaster life cycle, but that 7.8% of Wolbachia genes exhibit robust stage- or sex-specific expression differences when studied in the whole-organism context. Differentially-expressed Wolbachia genes are typically up-regulated after Drosophila embryogenesis and include many bacterial membrane, secretion system, and ankyrin repeat-containing proteins. Sex-biased genes are often organized as small operons of uncharacterized genes and are mainly up-regulated in adult Drosophila males in an age-dependent manner. We also systematically investigated expression levels of previously-reported candidate genes thought to be involved in host-microbe interaction, including those in the WO-A and WO-B prophages and in the Octomom region, which has been implicated in regulating bacterial titer and pathogenicity. Our work provides comprehensive insight into the developmental dynamics of gene expression for a widespread endosymbiont in its natural host context, and shows that public gene expression data harbor rich resources to probe the functional basis of the Wolbachia-Drosophila symbiosis and annotate the transcriptional outputs of the Wolbachia genome. PMID:26497146

Comparison of Model and Observations of Middle Atmospheric HOx Response to Solar 27-day Cycles: Quantifying Model Uncertainties due to Photochemistry

NASA Astrophysics Data System (ADS)

Wang, S.; Li, K. F.; Shia, R. L.; Yung, Y. L.; Sander, S. P.

2016-12-01

HO2 and OH (known as odd oxygen HOx), play an important role in middle atmospheric chemistry, in particular, O3 destruction through catalytic HOx reaction cycles. Due to their photochemical production and short chemical lifetimes, HOx species response rapidly to solar UV irradiance changes during solar cycles, resulting in variability in the corresponding O3 chemistry. Observational evidences for both OH and HO2 variability due to solar cycles have been reported. However, puzzling discrepancies remain. In particular, the large discrepancy between model and observations of solar 11-year cycle signal in OH and the significantly different model results when adopting different solar spectral irradiance (SSI) [Wang et al., 2013] suggest that both uncertainties in SSI variability and uncertainties in our current understanding of HOx-O3 chemistry could contribute to the discrepancy. Since the short-term SSI variability (e.g. changes during solar 27-day cycles) has little uncertainty, investigating 27-day solar cycle signals in HOx allows us to simplify the complex problem and to focus on the uncertainties in chemistry alone. We use the Caltech-JPL photochemical model to simulate observed HOx variability during 27-day cycles. The comparison between Aura Microwave Limb Sounder (MLS) observations and our model results (using standard chemistry and "adjusted chemistry", respectively) will be discussed. A better understanding of uncertainties in chemistry will eventually help us separate the contribution of chemistry from contributions of SSI uncertainties to the complex discrepancy between model and observations of OH responses to solar 11-year cycles.

A puzzle used to teach the cardiac cycle.

PubMed

Marcondes, Fernanda K; Moura, Maria J C S; Sanches, Andrea; Costa, Rafaela; de Lima, Patricia Oliveira; Groppo, Francisco Carlos; Amaral, Maria E C; Zeni, Paula; Gaviao, Kelly Cristina; Montrezor, Luís H

2015-03-01

The aim of the present article is to describe a puzzle developed for use in teaching cardiac physiology classes. The puzzle presents figures of phases of the cardiac cycle and a table with five columns: phases of cardiac cycle, atrial state, ventricular state, state of atrioventricular valves, and pulmonary and aortic valves. Chips are provided for use to complete the table. Students are requested to discuss which is the correct sequence of figures indicating the phases of cardiac cycle. Afterward, they should complete the table with the chips. Students of biology, dentistry, medicine, pharmacy, and nursing graduation courses from seven institutions performed the puzzle evaluation. They were invited to indicate whether the puzzle had been useful for learning about the subject by filling one of four alternatives. Of the students, 4.6% answered that it was not necessary but helped them to confirm what they had learned, 64.5% reported that although they had previously understood the cardiac cycle, the puzzle helped them to solve doubts and promoted a better understanding of it, and 30.9% said that they needed the puzzle to understand the cardiac cycle, without differences among courses, institutions, and course semesters. The results of the present study suggest that a simple and inexpensive puzzle may be useful as an active learning methodology applied after the theoretical lecture, as a complementary tool for studying cardiac cycle physiology. Copyright © 2015 The American Physiological Society.

Legacy phosphorus accumulation and management in the global context: insights from long-term analysis of major river basins

NASA Astrophysics Data System (ADS)

Powers, S. M.; Burt, T. P.; Chan, N. I.; Elser, J. J.; Haygarth, P. M.; Howden, N. J. K.; Jarvie, H. P.; Peterson, H. M.; Shen, J.; Worrall, F.; Sharpley, A. N.

2014-12-01

Phosphorus (P) is closely linked to major societal concerns including food security and water quality, and human activities strongly control the modern global P cycle. Current knowledge of the P cycle includes many insights about relatively short-term processes, but a long-term and landscape-level view may be needed to understand P status and optimize P management towards P sustainability. We reconstructed long-term (>40 years) P mass balances and rates of P accumulation in three major river basins where excess P pollution is demanding improvements in P management at local, national, and international levels. We focus on: Maumee River Basin, a major source of agricultural P to Lake Erie, the southernmost and shallowest of the Laurentian Great Lakes; Thames River Basin, where fluxes of effluent P from the London, England metropolitan area have declined following improvements in wastewater treatment; Yangtze (Changjiang) River Basin, the largest in China, which is undergoing rapid economic development. The Maumee and Thames are intensively monitored, and show long-term declines in basin P inputs that represent a step towards P sustainability. However, river P outputs have been slower to decline, consistent with the hypothesis that legacy P is mobilizing from soils or from within the river network. Published data on the Yangtze indicate the P flux from land to water has clearly increased with industrialization and population growth. Historical trajectories of P accumulation and depletion in major river basins are providing new understanding about the long-term impacts of P management, including watershed P legacies and response times, that may inform future policy towards local, national, and global P sustainability.

Screening for genes and subnetworks associated with pancreatic cancer based on the gene expression profile.

PubMed

Long, Jin; Liu, Zhe; Wu, Xingda; Xu, Yuanhong; Ge, Chunlin

2016-05-01

The present study aimed to screen for potential genes and subnetworks associated with pancreatic cancer (PC) using the gene expression profile. The expression profile GSE 16515 was downloaded from the Gene Expression Omnibus database, which included 36 PC tissue samples and 16 normal samples. Limma package in R language was used to screen differentially expressed genes (DEGs), which were grouped as up‑ and downregulated genes. Then, PFSNet was applied to perform subnetwork analysis for all the DEGs. Moreover, Gene Ontology (GO) and REACTOME pathway enrichment analysis of up‑ and downregulated genes was performed, followed by protein‑protein interaction (PPI) network construction using Search Tool for the Retrieval of Interacting Genes Search Tool for the Retrieval of Interacting Genes. In total, 1,989 DEGs including 1,461 up‑ and 528 downregulated genes were screened out. Subnetworks including pancreatic cancer in PC tissue samples and intercellular adhesion in normal samples were identified, respectively. A total of 8 significant REACTOME pathways for upregulated DEGs, such as hemostasis and cell cycle, mitotic were identified. Moreover, 4 significant REACTOME pathways for downregulated DEGs, including regulation of β‑cell development and transmembrane transport of small molecules were screened out. Additionally, DEGs with high connectivity degrees, such as CCNA2 (cyclin A2) and PBK (PDZ binding kinase), of the module in the protein‑protein interaction network were mainly enriched with cell‑division cycle. CCNA2 and PBK of the module and their relative pathway cell‑division cycle, and two subnetworks (pancreatic cancer and intercellular adhesion subnetworks) may be pivotal for further understanding of the molecular mechanism of PC.

Numerical simulation of two consecutive nasal respiratory cycles: toward a better understanding of nasal physiology.

PubMed

de Gabory, Ludovic; Reville, Nicolas; Baux, Yannick; Boisson, Nicolas; Bordenave, Laurence

2018-01-16

Computational fluid dynamic (CFD) simulations have greatly improved the understanding of nasal physiology. We postulate that simulating the entire and repeated respiratory nasal cycles, within the whole sinonasal cavities, is mandatory to gather more accurate observations and better understand airflow patterns. A 3-dimensional (3D) sinonasal model was constructed from a healthy adult computed tomography (CT) scan which discretized in 6.6 million cells (mean volume, 0.008 mm 3 ). CFD simulations were performed with ANSYS©FluentTMv16.0.0 software with transient and turbulent airflow (k-ω model). Two respiratory cycles (8 seconds) were simulated to assess pressure, velocity, wall shear stress, and particle residence time. The pressure gradients within the sinus cavities varied according to their place of connection to the main passage. Alternations in pressure gradients induced a slight pumping phenomenon close to the ostia but no movement of air was observed within the sinus cavities. Strong movements were observed within the inferior meatus during expiration contrary to the inspiration, as in the olfactory cleft at the same time. Particle residence time was longer during expiration than inspiration due to nasal valve resistance, as if the expiratory phase was preparing the next inspiratory phase. Throughout expiration, some particles remained in contact with the lower turbinates. The posterior part of the olfactory cleft was gradually filled with particles that did not leave the nose at the next respiratory cycle. This pattern increased as the respiratory cycle was repeated. CFD is more efficient and reliable when the entire respiratory cycle is simulated and repeated to avoid losing information. © 2018 ARS-AAOA, LLC.

Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils.

PubMed

Gill, Aman S; Lee, Angela; McGuire, Krista L

2017-08-15

New York City (NYC) is pioneering green infrastructure with the use of bioswales and other engineered soil-based habitats to provide stormwater infiltration and other ecosystem functions. In addition to avoiding the environmental and financial costs of expanding traditional built infrastructure, green infrastructure is thought to generate cobenefits in the form of diverse ecological processes performed by its plant and microbial communities. Yet, although plant communities in these habitats are closely managed, we lack basic knowledge about how engineered ecosystems impact the distribution and functioning of soil bacteria. We sequenced amplicons of the 16S ribosomal subunit, as well as seven genes associated with functional pathways, generated from both total (DNA-based) and expressed (RNA) soil communities in the Bronx, NYC, NY, in order to test whether bioswale soils host characteristic bacterial communities with evidence for enriched microbial functioning, compared to nonengineered soils in park lawns and tree pits. Bioswales had distinct, phylogenetically diverse bacterial communities, including taxa associated with nutrient cycling and metabolism of hydrocarbons and other pollutants. Bioswale soils also had a significantly greater diversity of genes involved in several functional pathways, including carbon fixation ( cbbL-R [ cbbL gene, red-like subunit] and apsA ), nitrogen cycling ( noxZ and amoA ), and contaminant degradation ( bphA ); conversely, no functional genes were significantly more abundant in nonengineered soils. These results provide preliminary evidence that urban land management can shape the diversity and activity of soil communities, with positive consequences for genetic resources underlying valuable ecological functions, including biogeochemical cycling and degradation of common urban pollutants. IMPORTANCE Management of urban soil biodiversity by favoring taxa associated with decontamination or other microbial metabolic processes is a powerful prospect, but it first requires an understanding of how engineered soil habitats shape patterns of microbial diversity. This research adds to our understanding of urban microbial biogeography by providing data on soil bacteria in bioswales, which had relatively diverse and compositionally distinct communities compared to park and tree pit soils. Bioswales also contained comparatively diverse pools of genes related to carbon sequestration, nitrogen cycling, and contaminant degradation, suggesting that engineered soils may serve as effective reservoirs of functional microbial biodiversity. We also examined both total (DNA-based) and expressed (RNA) communities, revealing that total bacterial communities (the exclusive targets in the vast majority of soil studies) were poor predictors of expressed community diversity, pointing to the value of quantifying RNA, especially when ecological functioning is considered. Copyright © 2017 American Society for Microbiology.

Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils

PubMed Central

Lee, Angela; McGuire, Krista L.

2017-01-01

ABSTRACT New York City (NYC) is pioneering green infrastructure with the use of bioswales and other engineered soil-based habitats to provide stormwater infiltration and other ecosystem functions. In addition to avoiding the environmental and financial costs of expanding traditional built infrastructure, green infrastructure is thought to generate cobenefits in the form of diverse ecological processes performed by its plant and microbial communities. Yet, although plant communities in these habitats are closely managed, we lack basic knowledge about how engineered ecosystems impact the distribution and functioning of soil bacteria. We sequenced amplicons of the 16S ribosomal subunit, as well as seven genes associated with functional pathways, generated from both total (DNA-based) and expressed (RNA) soil communities in the Bronx, NYC, NY, in order to test whether bioswale soils host characteristic bacterial communities with evidence for enriched microbial functioning, compared to nonengineered soils in park lawns and tree pits. Bioswales had distinct, phylogenetically diverse bacterial communities, including taxa associated with nutrient cycling and metabolism of hydrocarbons and other pollutants. Bioswale soils also had a significantly greater diversity of genes involved in several functional pathways, including carbon fixation (cbbL-R [cbbL gene, red-like subunit] and apsA), nitrogen cycling (noxZ and amoA), and contaminant degradation (bphA); conversely, no functional genes were significantly more abundant in nonengineered soils. These results provide preliminary evidence that urban land management can shape the diversity and activity of soil communities, with positive consequences for genetic resources underlying valuable ecological functions, including biogeochemical cycling and degradation of common urban pollutants. IMPORTANCE Management of urban soil biodiversity by favoring taxa associated with decontamination or other microbial metabolic processes is a powerful prospect, but it first requires an understanding of how engineered soil habitats shape patterns of microbial diversity. This research adds to our understanding of urban microbial biogeography by providing data on soil bacteria in bioswales, which had relatively diverse and compositionally distinct communities compared to park and tree pit soils. Bioswales also contained comparatively diverse pools of genes related to carbon sequestration, nitrogen cycling, and contaminant degradation, suggesting that engineered soils may serve as effective reservoirs of functional microbial biodiversity. We also examined both total (DNA-based) and expressed (RNA) communities, revealing that total bacterial communities (the exclusive targets in the vast majority of soil studies) were poor predictors of expressed community diversity, pointing to the value of quantifying RNA, especially when ecological functioning is considered. PMID:28576763

Comparison of Optimal Thermodynamic Models of the Tricarboxylic Acid Cycle from Heterotrophs, Cyanobacteria, and Green Sulfur Bacteria.

PubMed

Thomas, Dennis G; Jaramillo-Riveri, Sebastian; Baxter, Douglas J; Cannon, William R

2014-12-26

We have applied a new stochastic simulation approach to predict the metabolite levels, material flux, and thermodynamic profiles of the oxidative TCA cycles found in E. coli and Synechococcus sp. PCC 7002, and in the reductive TCA cycle typical of chemolithoautotrophs and phototrophic green sulfur bacteria such as Chlorobaculum tepidum. The simulation approach is based on modeling states using statistical thermodynamics and employs an assumption similar to that used in transition state theory. The ability to evaluate the thermodynamics of metabolic pathways allows one to understand the relationship between coupling of energy and material gradients in the environment and the self-organization of stable biological systems, and it is shown that each cycle operates in the direction expected due to its environmental niche. The simulations predict changes in metabolite levels and flux in response to changes in cofactor concentrations that would be hard to predict without an elaborate model based on the law of mass action. In fact, we show that a thermodynamically unfavorable reaction can still have flux in the forward direction when it is part of a reaction network. The ability to predict metabolite levels, energy flow, and material flux should be significant for understanding the dynamics of natural systems and for understanding principles for engineering organisms for production of specialty chemicals.

Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations, and nitrogen availability

Treesearch

Joseph M. Craine; Andrew J. Elmore; Marcos P. M. Aidar; Mercedes Bustamante; Todd E. Dawson; Erik A. Hobbie; Ansgar Kahmen; Michelle C. Mack; Kendra K. McLauchlan; Anders Michelsen; Gabriela Nardoto; Linda H. Pardo; Josep Penuelas; Peter B. Reich; Edward A.G. Schuur; William D. Stock; Pamela H. Templer; Ross A. Virginia; Jeffrey M. Welker; Ian J. Wright

2009-01-01

Ratios of nitrogen (N) isotopes in leaves could elucidate underlying patterns of N cycling across ecological gradients. To better understand global-scale patterns of N cycling, we compiled data on foliar N isotope ratios, foliar N concentrations, mycorrhizal type and climate for over 11 000 plants worldwide. Global-scale comparisons of other components of the N cycle...

Evaluation of the Accumulation of Trace Metals (as, U, CR, CU, PB, Zn) on Iron-Manganese Coatings on in Situ Stream Pebbles and Emplaced Substrates

NASA Astrophysics Data System (ADS)

Turpin, M. M.; Blake, J.; Crossey, L. J.; Ali, A.; Hansson, L.

2015-12-01

Exposure to trace metals (As, U, Cr, Cu, Pb, Zn) has potential negative health effects on human populations and wildlife. Geothermal waters often have elevated concentrations of trace elements and understanding the geochemical cycling of these elements can be challenging. Previous studies have utilized in situ stream pebbles and glass or ceramic substrates with iron-manganese oxide coatings to understand contamination and or chemical cycling. This project's main focus is to develop an ideal tracing method using adsorption onto substrate surfaces and to define key parameters that are necessary for the phenomenon of adsorption between trace metals and these surface coatings to occur. Sampling locations include the Jemez River and Rio San Antonio in the Jemez mountains, northern New Mexico. Both streams have significant geothermal inputs. Pebbles and cobbles were gathered from the active stream channel and 6mm glass beads and 2 X1 in. ceramic plates were placed in streams for three weeks to allow for coating accumulation. Factors such as leachate type, water pH, substrate type, coating accumulation period and leach time were all considered in this experiment. It was found that of the three leachates (aqua regia, 10% aqua regia and hydroxylamine), hydroxylamine was the most effective at leaching coatings without dissolving substrates. Samples leached with aqua regia and 10% aqua regia were found to lose weight and mass over the following 5, 7, and 10 day measurements. Glass beads were determined to be more effective than in stream pebbles as an accumulation substrate: coatings were more easily controlled and monitored. Samples leached with hydroxylamine for 5 hours and 72 hours showed little difference in their leachate concentrations, suggesting that leach time has little impact on the concentration of leachate samples. This research aims to find the best method for trace metal accumulation in streams to aid in understanding geochemical cycling.

Impacts of altered precipitation regimes on soil communities and biogeochemistry in arid and semi-arid ecosystems.

PubMed

Nielsen, Uffe N; Ball, Becky A

2015-04-01

Altered precipitation patterns resulting from climate change will have particularly significant consequences in water-limited ecosystems, such as arid to semi-arid ecosystems, where discontinuous inputs of water control biological processes. Given that these ecosystems cover more than a third of Earth's terrestrial surface, it is important to understand how they respond to such alterations. Altered water availability may impact both aboveground and belowground communities and the interactions between these, with potential impacts on ecosystem functioning; however, most studies to date have focused exclusively on vegetation responses to altered precipitation regimes. To synthesize our understanding of potential climate change impacts on dryland ecosystems, we present here a review of current literature that reports the effects of precipitation events and altered precipitation regimes on belowground biota and biogeochemical cycling. Increased precipitation generally increases microbial biomass and fungal:bacterial ratio. Few studies report responses to reduced precipitation but the effects likely counter those of increased precipitation. Altered precipitation regimes have also been found to alter microbial community composition but broader generalizations are difficult to make. Changes in event size and frequency influences invertebrate activity and density with cascading impacts on the soil food web, which will likely impact carbon and nutrient pools. The long-term implications for biogeochemical cycling are inconclusive but several studies suggest that increased aridity may cause decoupling of carbon and nutrient cycling. We propose a new conceptual framework that incorporates hierarchical biotic responses to individual precipitation events more explicitly, including moderation of microbial activity and biomass by invertebrate grazing, and use this framework to make some predictions on impacts of altered precipitation regimes in terms of event size and frequency as well as mean annual precipitation. While our understanding of dryland ecosystems is improving, there is still a great need for longer term in situ manipulations of precipitation regime to test our model. © 2014 John Wiley & Sons Ltd.

Understanding the social and economic contexts surrounding women engaged in street-level prostitution.

PubMed

Murphy, Lyn Stankiewicz

2010-12-01

Prostitution involves the exchange of sexual services for economic compensation. Due to the sexual promiscuity surrounding prostitution, women involved in prostitution constitute a high-risk group for contracting and transmitting STDs, including HIV. Prostitution is not only a public health concern, but also an economic one. Cities throughout the United States spent an average of $7.5 to $16 million per year enforcing prostitution laws and addressing negative outcomes associated with prostitution. Thus, women involved in prostitution are a cause for concern from both public health and economic perspectives. However, little is known about why women remain in this type of behavior given the risks prostitution presents, and even less is known about how to intervene and interrupt the complex cycle of prostitution. Thus, the purpose of this study was to understand what factors contribute to a woman's decision to remain in prostitution. A series of interviews were conducted with 12 women engaged in street-level prostitution. Results of the study revealed that drug use not only spurs entry into prostitution, but also contributes to the tenure of prostitution. Further, social support and economic stability are plausible reasons for women remaining in prostitution. These findings lead us to recommendations for policy and program development. Women involved in prostitution are a highly marginalized population, rarely recognized as individuals with life histories. Understanding why women remain in prostitution is important, because until these determinants are known, intervention programs designed to interrupt the cycle, and ultimately prevent prostitution, cannot be formulated.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hunter, R.B.

This is the final progress report of a Department of Energy (DOE), Nevada operations Office (NV), program to monitor the ecology of the Nevada Test Site (NTS). The eight-year Basic Environmental Compliance and Monitoring Program (BECAMP) included meeting goals of understanding the spatial and temporal changes of plants and animals on the NTS, and determining the effects of DOE operations on those plants and animals. Determination of the changes was addressed through monitoring the most common plant and animal species at undisturbed (baseline) plots located in the major NTS valleys and mesas. One plot in Yucca Flat, the site ofmore » most nuclear weapons tests, was monitored annually, while other baseline plots were censused on a three- or four-year cycle. Effects of DOE operations were examined at sites of major disturbances, related to both DOE operations and natural disturbance mechanisms, censused on a three-year cycle. This report concentrates on work completed in 1994.« less

Stochastic cycle selection in active flow networks.

PubMed

Woodhouse, Francis G; Forrow, Aden; Fawcett, Joanna B; Dunkel, Jörn

2016-07-19

Active biological flow networks pervade nature and span a wide range of scales, from arterial blood vessels and bronchial mucus transport in humans to bacterial flow through porous media or plasmodial shuttle streaming in slime molds. Despite their ubiquity, little is known about the self-organization principles that govern flow statistics in such nonequilibrium networks. Here we connect concepts from lattice field theory, graph theory, and transition rate theory to understand how topology controls dynamics in a generic model for actively driven flow on a network. Our combined theoretical and numerical analysis identifies symmetry-based rules that make it possible to classify and predict the selection statistics of complex flow cycles from the network topology. The conceptual framework developed here is applicable to a broad class of biological and nonbiological far-from-equilibrium networks, including actively controlled information flows, and establishes a correspondence between active flow networks and generalized ice-type models.

Towards an Ecological Understanding of Dinoflagellate Cyst Functions

PubMed Central

Bravo, Isabel; Figueroa, Rosa Isabel

2014-01-01

The life cycle of many dinoflagellates includes at least one nonflagellated benthic stage (cyst). In the literature, the different types of dinoflagellate cysts are mainly defined based on morphological (number and type of layers in the cell wall) and functional (long- or short-term endurance) differences. These characteristics were initially thought to clearly distinguish pellicle (thin-walled) cysts from resting (double-walled) dinoflagellate cysts. The former were considered short-term (temporal) and the latter long-term (resting) cysts. However, during the last two decades further knowledge has highlighted the great intricacy of dinoflagellate life histories, the ecological significance of cyst stages, and the need to clarify the functional and morphological complexities of the different cyst types. Here we review and, when necessary, redefine the concepts of resting and pellicle cysts, examining both their structural and their functional characteristics in the context of the life cycle strategies of several dinoflagellate species. PMID:27694774

Enhancing lithium-sulphur battery performance by strongly binding the discharge products on amino-functionalized reduced graphene oxide.

PubMed

Wang, Zhiyu; Dong, Yanfeng; Li, Hongjiang; Zhao, Zongbin; Wu, Hao Bin; Hao, Ce; Liu, Shaohong; Qiu, Jieshan; Lou, Xiong Wen David

2014-09-25

Lithium-sulphur batteries are one very appealing power source with high energy density. But their practical use is still hindered by several issues including short lifespan, low efficiency and safety concern from the lithium anode. Polysulphide dissolution and insulating nature of sulphur are generally considered responsible for the capacity degradation. However, the detachment of discharge products, that is, highly polar lithium sulphides, from nonpolar carbon matrix (for example, graphene) has been rarely studied as one critical factor. Here we report the strongly covalent stabilization of sulphur and its discharge products on amino-functionalized reduced graphene oxide that enables stable capacity retention of 80% for 350 cycles with high capacities and excellent high-rate response up to 4 C. The present study demonstrates a feasible and effective strategy to solve the long-term cycling difficulty for lithium-sulphur batteries and also helps to understand the capacity decay mechanism involved.

Responses of the Tropical Atmospheric Circulation to Climate Change and Connection to the Hydrological Cycle

NASA Astrophysics Data System (ADS)

Ma, Jian; Chadwick, Robin; Seo, Kyong-Hwan; Dong, Changming; Huang, Gang; Foltz, Gregory R.; Jiang, Jonathan H.

2018-05-01

This review describes the climate change–induced responses of the tropical atmospheric circulation and their impacts on the hydrological cycle. We depict the theoretically predicted changes and diagnose physical mechanisms for observational and model-projected trends in large-scale and regional climate. The tropical circulation slows down with moisture and stratification changes, connecting to a poleward expansion of the Hadley cells and a shift of the intertropical convergence zone. Redistributions of regional precipitation consist of thermodynamic and dynamical components, including a strong offset between moisture increase and circulation weakening throughout the tropics. This allows other dynamical processes to dominate local circulation changes, such as a surface warming pattern effect over oceans and multiple mechanisms over land. To improve reliability in climate projections, more fundamental understandings of pattern formation, circulation change, and the balance of various processes redistributing land rainfall are suggested to be important.

Modeling glacial climates

NASA Technical Reports Server (NTRS)

North, G. R.; Crowley, T. J.

1984-01-01

Mathematical climate modelling has matured as a discipline to the point that it is useful in paleoclimatology. As an example a new two dimensional energy balance model is described and applied to several problems of current interest. The model includes the seasonal cycle and the detailed land-sea geographical distribution. By examining the changes in the seasonal cycle when external perturbations are forced upon the climate system it is possible to construct hypotheses about the origin of midlatitude ice sheets and polar ice caps. In particular the model predicts a rather sudden potential for glaciation over large areas when the Earth's orbital elements are only slightly altered. Similarly, the drift of continents or the change of atmospheric carbon dioxide over geological time induces radical changes in continental ice cover. With the advance of computer technology and improved understanding of the individual components of the climate system, these ideas will be tested in far more realistic models in the near future.

Key ecological responses to nitrogen are altered by climate ...

EPA Pesticide Factsheets

Here we review the effects of nitrogen and climate (e.g. temperature and precipitation) on four aspects of ecosystem structure and function including hydrologic-coupled nitrogen cycling, carbon cycling, acidification and biodiversity. Ecosystems are simultaneously exposed to multiple stressors; two dominant drivers threatening ecosystems are anthropogenic nitrogen loading and climate change. Evaluating the cumulative effects of these stressors provides a holistic view of ecosystem vulnerability, which would better inform policy decisions aimed to protect the sustainability of ecosystems. Our current knowledge of the cumulative effects of these stressors is growing, but limited. The goal of this paper is to synthesize the state of scientific knowledge on how ecosystems are affected by the interactions of meteorlogic/climatic factors (e.g., temperature and precipitation) and nitrogen addition. Understanding the interactions of meteorlogic/climatic factors and nitrogen will help to inform how current and projected variability may affect ecosystem response.

Regulation of pyruvate metabolism and human disease.

PubMed

Gray, Lawrence R; Tompkins, Sean C; Taylor, Eric B

2014-07-01

Pyruvate is a keystone molecule critical for numerous aspects of eukaryotic and human metabolism. Pyruvate is the end-product of glycolysis, is derived from additional sources in the cellular cytoplasm, and is ultimately destined for transport into mitochondria as a master fuel input undergirding citric acid cycle carbon flux. In mitochondria, pyruvate drives ATP production by oxidative phosphorylation and multiple biosynthetic pathways intersecting the citric acid cycle. Mitochondrial pyruvate metabolism is regulated by many enzymes, including the recently discovered mitochondria pyruvate carrier, pyruvate dehydrogenase, and pyruvate carboxylase, to modulate overall pyruvate carbon flux. Mutations in any of the genes encoding for proteins regulating pyruvate metabolism may lead to disease. Numerous cases have been described. Aberrant pyruvate metabolism plays an especially prominent role in cancer, heart failure, and neurodegeneration. Because most major diseases involve aberrant metabolism, understanding and exploiting pyruvate carbon flux may yield novel treatments that enhance human health.

Analysis of System Margins on Missions Utilizing Solar Electric Propulsion

NASA Technical Reports Server (NTRS)

Oh, David Y.; Landau, Damon; Randolph, Thomas; Timmerman, Paul; Chase, James; Sims, Jon; Kowalkowski, Theresa

2008-01-01

NASA's Jet Propulsion Laboratory has conducted a study focused on the analysis of appropriate margins for deep space missions using solar electric propulsion (SEP). The purpose of this study is to understand the links between disparate system margins (power, mass, thermal, etc.) and their impact on overall mission performance and robustness. It is determined that the various sources of uncertainty and risk associated with electric propulsion mission design can be summarized into three relatively independent parameters 1) EP Power Margin, 2) Propellant Margin and 3) Duty Cycle Margin. The overall relationship between these parameters and other major sources of uncertainty is presented. A detailed trajectory analysis is conducted to examine the impact that various assumptions related to power, duty cycle, destination, and thruster performance including missed thrust periods have on overall performance. Recommendations are presented for system margins for deep space missions utilizing solar electric propulsion.

Report on the ESO and Excellence Cluster Universe Workshop "Galaxy Ecosystem: Flow of Baryons through Galaxies"

NASA Astrophysics Data System (ADS)

Mainieri, V.; Popesso, P.

2017-12-01

This conference focussed on the "baryon cycle", namely the flow of baryons through galaxies. The following aspects were discussed: a) the gas inflow into systems through streams of pristine gas or as drizzles of recycled material; b) the conversion of this gas into stars; and c) the ejection of gas enriched with heavy elements through powerful outflows. Understanding these different but mutually connected phases is of fundamental importance when studying the details of galaxy formation and evolution through cosmic time. This conference was held following the month-long workshop of the Munich Institute for Astro- and Particle Physics (MIAPP) entitled: "In & out: What rules the galaxy baryon cycle?" It therefore provided an opportunity to share the main outcomes of the MIAPP workshop with a larger audience, including many young outstanding scientists who could not attend the MIAPP workshop.