Measurement of the I = 1 / 2 K π S -wave amplitude from Dalitz plot analyses of η c → K K ¯ π in two-photon interactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J. P.; Poireau, V.; Tisserand, V.

Here we study the processes γγ→Kmore » $$0\\atop{S}$$K ±π ∓ and γγ→K +K -π 0 using a data sample of 519 fb -1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e +e - collider at center-of-mass energies at and near the Υ(nS) (n=2, 3, 4) resonances. We observe ηc decays to both final states and perform Dalitz plot analyses using a model-independent partial wave analysis technique. This allows a model-independent measurement of the mass-dependence of the I=1/2 Kπ S-wave amplitude and phase. A comparison between the present measurement and those from previous experiments indicates similar behavior for the phase up to a mass of 1.5 GeV/c 2. In contrast, the amplitudes show very marked differences. Lastly, the data require the presence of a new a 0(1950) resonance with parameters m=1931±14±22 MeV/c 2 and Γ=271±22±29 MeV.« less

Measurement of the I = 1 / 2 K π S -wave amplitude from Dalitz plot analyses of η c → K K ¯ π in two-photon interactions

DOE PAGES

Lees, J. P.; Poireau, V.; Tisserand, V.; ...

2016-01-20

Here we study the processes γγ→Kmore » $$0\\atop{S}$$K ±π ∓ and γγ→K +K -π 0 using a data sample of 519 fb -1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e +e - collider at center-of-mass energies at and near the Υ(nS) (n=2, 3, 4) resonances. We observe ηc decays to both final states and perform Dalitz plot analyses using a model-independent partial wave analysis technique. This allows a model-independent measurement of the mass-dependence of the I=1/2 Kπ S-wave amplitude and phase. A comparison between the present measurement and those from previous experiments indicates similar behavior for the phase up to a mass of 1.5 GeV/c 2. In contrast, the amplitudes show very marked differences. Lastly, the data require the presence of a new a 0(1950) resonance with parameters m=1931±14±22 MeV/c 2 and Γ=271±22±29 MeV.« less

The Scientific Publications of Richard H. Dalitz, FRS (1925-2006)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aitchison, Ian J.R.; Close, Frank E.; Gal, Avraham

2006-03-29

Professor Richard H. Dalitz passed away on January 13, 2006. He was almost 81 years old and his outstanding contributions are intimately connected to some of the major breakthroughs of the 20th century in particle and nuclear physics. These outstanding contributions go beyond the Dalitz Plot, Dalitz Pair and CDD poles that bear his name. He pioneered the theoretical study of strange baryon resonances, of baryon spectroscopy in the quark model, and of hypernuclei, to all of which he made lasting contributions. His formulation of the ''{theta} - {tau} puzzle'' led to the discovery that parity is not a symmetrymore » of the weak interactions. A brief scientific evaluation of Dalitz's major contributions to particle and nuclear physics is hereby presented, followed by the first comprehensive list of his scientific publications, as assembled from several sources. The list is divided into two categories: the first, main part comprises Dalitz's research papers and reviews, including topics in the history of particle physics, biographies and reminescences; the second part lists book reviews, public lectures and obituaries authored by Dalitz, and books edited by him. This provides the first necessary step towards a more systematic research of the Dalitz heritage in modern physics.« less

Radiative corrections to the η(') Dalitz decays

NASA Astrophysics Data System (ADS)

Husek, Tomáš; Kampf, Karol; Novotný, Jiří; Leupold, Stefan

2018-05-01

We provide the complete set of radiative corrections to the Dalitz decays η(')→ℓ+ℓ-γ beyond the soft-photon approximation, i.e., over the whole range of the Dalitz plot and with no restrictions on the energy of a radiative photon. The corrections inevitably depend on the η(')→ γ*γ(*) transition form factors. For the singly virtual transition form factor appearing, e.g., in the bremsstrahlung correction, recent dispersive calculations are used. For the one-photon-irreducible contribution at the one-loop level (for the doubly virtual form factor), we use a vector-meson-dominance-inspired model while taking into account the η -η' mixing.

Study of CP Violation in Dalitz-Plot Analyses of B-Meson Decays to Three Kaons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lindquist, Brian

The Standard Model (SM) explains CP violation in terms of the CKM matrix. The BABAR experiment was designed mainly to test the CKM model in B decays. B decays that proceed through b → s loop diagrams, of which B {yields} KKK decays are an example, are sensitive to new physics effects that could lead to deviations from the CKM predictions for CP violation. We present studies of CP violation in the decays B + → K +K -K +, B + → K S 0K S 0K +, and B 0 → K +K -K S 0, using a Dalitz plot amplitude analysis. These studies are based on approximately 470 million Bmore » $$\\bar{B}$$ decays collected by BABAR at the PEP-II collider at SLAC. We perform measurements of time-dependent CP violation in B 0 → K +K -K S 0, including B 0 → ΦK S 0. We measure a CP-violating phase β eff (ΦK S 0) = 0.36 ± 0.11 ± 0.04 rad., in agreement with the SM. This is the world's most precise measurement of this quantity. We also measure direct CP asymmetries in all three decay modes, including the direct CP asymmetry A CP (ΦK +) = (12.8 ± 4.4 ± 1.3)%, which is 2.8 sigma away from zero. This measurement is in tension with the SM, which predicts an asymmetry of a few percent. We also study the resonant and nonresonant features in the B → KKK Dalitz plots. We find that the hypothetical scalar f X(1500) resonance, introduced by prior analyses to explain an unknown peak in the m KK spectrum, cannot adequately describe the data. We conclude instead that the f X(1500) can be explained as the sum of the f 0(1500), f' 2(1525), and f 0(1710) resonances, removing the need for the hypothetical f X(1500). We also find that an exponential nonresonant model, used by previous analyses to describe the broad nonresonant feature seen in B → KKK decays, cannot fully model the data. We introduce a new nonresonant model that contains more free parameters, allows for phase motion, and contains both S-wave and P-wave components.« less

Dalitz plot analyses of J /ψ →π+π-π0, J /ψ →K+K-π0, and J /ψ →Ks0K±π∓ produced via e+e- annihilation with initial-state radiation

NASA Astrophysics Data System (ADS)

Lees, J. P.; Poireau, V.; Tisserand, V.; Grauges, E.; Palano, A.; Eigen, G.; Brown, D. N.; Kolomensky, Yu. G.; Fritsch, M.; Koch, H.; Schroeder, T.; Hearty, C.; Mattison, T. S.; McKenna, J. A.; So, R. Y.; Blinov, V. E.; Buzykaev, A. R.; Druzhinin, V. P.; Golubev, V. B.; Kravchenko, E. A.; Onuchin, A. P.; Serednyakov, S. I.; Skovpen, Yu. I.; Solodov, E. P.; Todyshev, K. Yu.; Lankford, A. J.; Gary, J. W.; Long, O.; Eisner, A. M.; Lockman, W. S.; Panduro Vazquez, W.; Chao, D. S.; Cheng, C. H.; Echenard, B.; Flood, K. T.; Hitlin, D. G.; Kim, J.; Miyashita, T. S.; Ongmongkolkul, P.; Porter, F. C.; Röhrken, M.; Huard, Z.; Meadows, B. T.; Pushpawela, B. G.; Sokoloff, M. D.; Sun, L.; Smith, J. G.; Wagner, S. R.; Bernard, D.; Verderi, M.; Bettoni, D.; Bozzi, C.; Calabrese, R.; Cibinetto, G.; Fioravanti, E.; Garzia, I.; Luppi, E.; Santoro, V.; Calcaterra, A.; de Sangro, R.; Finocchiaro, G.; Martellotti, S.; Patteri, P.; Peruzzi, I. M.; Piccolo, M.; Rotondo, M.; Zallo, A.; Passaggio, S.; Patrignani, C.; Lacker, H. M.; Bhuyan, B.; Szczepaniak, A. P.; Mallik, U.; Chen, C.; Cochran, J.; Prell, S.; Ahmed, H.; Pennington, M. R.; Gritsan, A. V.; Arnaud, N.; Davier, M.; Le Diberder, F.; Lutz, A. M.; Wormser, G.; Lange, D. J.; Wright, D. M.; Coleman, J. P.; Gabathuler, E.; Hutchcroft, D. E.; Payne, D. J.; Touramanis, C.; Bevan, A. J.; Di Lodovico, F.; Sacco, R.; Cowan, G.; Banerjee, Sw.; Brown, D. N.; Davis, C. L.; Denig, A. G.; Gradl, W.; Griessinger, K.; Hafner, A.; Schubert, K. R.; Barlow, R. J.; Lafferty, G. D.; Cenci, R.; Jawahery, A.; Roberts, D. A.; Cowan, R.; Robertson, S. H.; Dey, B.; Neri, N.; Palombo, F.; Cheaib, R.; Cremaldi, L.; Godang, R.; Summers, D. J.; Taras, P.; De Nardo, G.; Sciacca, C.; Raven, G.; Jessop, C. P.; LoSecco, J. M.; Honscheid, K.; Kass, R.; Gaz, A.; Margoni, M.; Posocco, M.; Simi, G.; Simonetto, F.; Stroili, R.; Akar, S.; Ben-Haim, E.; Bomben, M.; Bonneaud, G. R.; Calderini, G.; Chauveau, J.; Marchiori, G.; Ocariz, J.; Biasini, M.; Manoni, E.; Rossi, A.; Batignani, G.; Bettarini, S.; Carpinelli, M.; Casarosa, G.; Chrzaszcz, M.; Forti, F.; Giorgi, M. A.; Lusiani, A.; Oberhof, B.; Paoloni, E.; Rama, M.; Rizzo, G.; Walsh, J. J.; Smith, A. J. S.; Anulli, F.; Faccini, R.; Ferrarotto, F.; Ferroni, F.; Pilloni, A.; Piredda, G.; Bünger, C.; Dittrich, S.; Grünberg, O.; Heß, M.; Leddig, T.; Voß, C.; Waldi, R.; Adye, T.; Wilson, F. F.; Emery, S.; Vasseur, G.; Aston, D.; Cartaro, C.; Convery, M. R.; Dorfan, J.; Dunwoodie, W.; Ebert, M.; Field, R. C.; Fulsom, B. G.; Graham, M. T.; Hast, C.; Innes, W. R.; Kim, P.; Leith, D. W. G. S.; Luitz, S.; MacFarlane, D. B.; Muller, D. R.; Neal, H.; Ratcliff, B. N.; Roodman, A.; Sullivan, M. K.; Va'vra, J.; Wisniewski, W. J.; Purohit, M. V.; Wilson, J. R.; Randle-Conde, A.; Sekula, S. J.; Bellis, M.; Burchat, P. R.; Puccio, E. M. T.; Alam, M. S.; Ernst, J. A.; Gorodeisky, R.; Guttman, N.; Peimer, D. R.; Soffer, A.; Spanier, S. M.; Ritchie, J. L.; Schwitters, R. F.; Izen, J. M.; Lou, X. C.; Bianchi, F.; De Mori, F.; Filippi, A.; Gamba, D.; Lanceri, L.; Vitale, L.; Martinez-Vidal, F.; Oyanguren, A.; Albert, J.; Beaulieu, A.; Bernlochner, F. U.; King, G. J.; Kowalewski, R.; Lueck, T.; Nugent, I. M.; Roney, J. M.; Sobie, R. J.; Tasneem, N.; Gershon, T. J.; Harrison, P. F.; Latham, T. E.; Prepost, R.; Wu, S. L.; BaBar Collaboration

2017-04-01

We study the processes e+e- →γISRJ /ψ , where J /ψ →π+π-π0, J /ψ →K+K-π0, and J /ψ →KS0K±π∓ using a data sample of 519 fb-1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e+e- collider at center-of-mass energies at and near the Υ (n S ) (n =2 ,3 ,4 ) resonances. We measure the ratio of branching fractions R1=B/(J /ψ →K+K-π0) B (J /ψ →π+π-π0) and R2=B/(J /ψ →KS0K±π∓) B (J /ψ →π+π-π0) . We perform Dalitz plot analyses of the three J /ψ decay modes and measure fractions for resonances contributing to the decays. We also analyze the J /ψ →π+π-π0 decay using the Veneziano model. We observe structures compatible with the presence of ρ (1450 ) in all three J /ψ decay modes and measure the relative branching fraction: R (ρ (1450 ))=B/(ρ (1450 )→K+K-) B (ρ (1450 )→π+π-) =0.307 ±0.084 (stat)±0.082 (sys).

η→3π: Study of the Dalitz Plot and Extraction of the Quark Mass Ratio Q.

PubMed

Colangelo, Gilberto; Lanz, Stefan; Leutwyler, Heinrich; Passemar, Emilie

2017-01-13

The η→3π amplitude is sensitive to the quark mass difference m_{u}-m_{d} and offers a unique way to determine the quark mass ratio Q^{2}≡(m_{s}^{2}-m_{ud}^{2})/(m_{d}^{2}-m_{u}^{2}) from experiment. We calculate the amplitude dispersively and fit the KLOE Collaboration data on the charged mode, varying the subtraction constants in the range allowed by chiral perturbation theory. The parameter-free predictions obtained for the neutral Dalitz plot and the neutral-to-charged branching ratio are in excellent agreement with experiment. Our representation of the transition amplitude implies Q=22.0±0.7.

Dalitz plot analysis of the D+→π-π+π+ decay

NASA Astrophysics Data System (ADS)

Bonvicini, G.; Cinabro, D.; Dubrovin, M.; Lincoln, A.; Asner, D. M.; Edwards, K. W.; Naik, P.; Briere, R. A.; Ferguson, T.; Tatishvili, G.; Vogel, H.; Watkins, M. E.; Rosner, J. L.; Adam, N. E.; Alexander, J. P.; Cassel, D. G.; Duboscq, J. E.; Ehrlich, R.; Fields, L.; Galik, R. S.; Gibbons, L.; Gray, R.; Gray, S. W.; Hartill, D. L.; Heltsley, B. K.; Hertz, D.; Jones, C. D.; Kandaswamy, J.; Kreinick, D. L.; Kuznetsov, V. E.; Mahlke-Krüger, H.; Mohapatra, D.; Onyisi, P. U. E.; Patterson, J. R.; Peterson, D.; Pivarski, J.; Riley, D.; Ryd, A.; Sadoff, A. J.; Schwarthoff, H.; Shi, X.; Stroiney, S.; Sun, W. M.; Wilksen, T.; Athar, S. B.; Patel, R.; Yelton, J.; Rubin, P.; Cawlfield, C.; Eisenstein, B. I.; Karliner, I.; Kim, D.; Lowrey, N.; Selen, M.; White, E. J.; Wiss, J.; Mitchell, R. E.; Shepherd, M. R.; Besson, D.; Pedlar, T. K.; Cronin-Hennessy, D.; Gao, K. Y.; Hietala, J.; Kubota, Y.; Klein, T.; Lang, B. W.; Poling, R.; Scott, A. W.; Smith, A.; Zweber, P.; Dobbs, S.; Metreveli, Z.; Seth, K. K.; Tomaradze, A.; Ernst, J.; Ecklund, K. M.; Severini, H.; Love, W.; Savinov, V.; Aquines, O.; Lopez, A.; Mehrabyan, S.; Mendez, H.; Ramirez, J.; Huang, G. S.; Miller, D. H.; Pavlunin, V.; Sanghi, B.; Shipsey, I. P. J.; Xin, B.; Adams, G. S.; Anderson, M.; Cummings, J. P.; Danko, I.; Hu, D.; Moziak, B.; Napolitano, J.; He, Q.; Insler, J.; Muramatsu, H.; Park, C. S.; Thorndike, E. H.; Yang, F.; Artuso, M.; Blusk, S.; Butt, J.; Horwitz, N.; Khalil, S.; Li, J.; Menaa, N.; Mountain, R.; Nisar, S.; Randrianarivony, K.; Sia, R.; Skwarnicki, T.; Stone, S.; Wang, J. C.

2007-07-01

Using 281pb-1 of data recorded by the CLEO-c detector in e+e- collisions at the ψ(3770), corresponding to 0.78×106 D+D- pairs, we investigate the substructure of the decay D+→π-π+π+ using the Dalitz plot technique. We find that our data are consistent with the following intermediate states: ρ(770)π+, f2(1270)π+, f0(1370)π+, f0(1500)π+, f0(980)π+, and σπ+. We confirm large S wave contributions at low ππ mass. We set upper limits on contributions of other possible intermediate states. We consider three models of the ππ S wave and find that all of them adequately describe our data.

Expected accuracy in a measurement of the CKM angle alpha using a Dalitz plot analysis of B0 ---> rho pi decays in the BTeV project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shestermanov, K.E.; Vasiliev, A.N; /Serpukhov, IHEP

2005-12-01

A precise measurement of the angle {alpha} in the CKM triangle is very important for a complete test of Standard Model. A theoretically clean method to extract {alpha} is provided by B{sup 0} {yields} {rho}{pi} decays. Monte Carlo simulations to obtain the BTeV reconstruction efficiency and to estimate the signal to background ratio for these decays were performed. Finally the time-dependent Dalitz plot analysis, using the isospin amplitude formalism for tre and penguin contributions, was carried out. It was shown that in one year of data taking BTeV could achieve an accuracy on {alpha} better than 5{sup o}.

Dalitz plot analyses of J / ψ → π + π - π 0 , J / ψ → K + K - π 0 , and J / ψ → K s 0 K ± π ∓ produced via e + e - annihilation with initial-state radiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J. P.; Poireau, V.; Tisserand, V.

Here, we study the processes e +e - → γ ISR J/ψ , where J/ψ → π +π -π 0, J/ψ → K +K -π 0 , and J / ψ → Kmore » $$0\\atop{S}$$ K ± π ∓ using a data sample of 519 fb -1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e +e - collider at center-of-mass energies at and near the Υ (nS) (n = 2 , 3 , 4) resonances. We measure the ratio of branching fractions R 1 = $$B(J/ψ →K^+K^- π^0)\\atop{B(J/ψ →π^+π^- π^0)}$$ and R 2= $$B(J/ψ →K^0_SK^±π^∓)\\atop{B(J/ψ →π^+π^- π^0)}$$. We perform Dalitz plot analyses of the three J/ψ decay modes and measure fractions for resonances contributing to the decays. We also analyze the J/ψ → $π^+π^- π^0$ decay using the Veneziano model. We observe structures compatible with the presence of ρ (1450) in all three J/ψ decay modes and measure the relative branching fraction: R (p(1450)) = $$Bp(1450)→K^+K^-)\\atop{B(p(1450)→π^+π^-)}$$ +0.307 ± 0.084 (stat) ± 0.082 (sys).« less

Dalitz plot analyses of J / ψ → π + π - π 0 , J / ψ → K + K - π 0 , and J / ψ → K s 0 K ± π ∓ produced via e + e - annihilation with initial-state radiation

DOE PAGES

Lees, J. P.; Poireau, V.; Tisserand, V.; ...

2017-04-10

Here, we study the processes e +e - → γ ISR J/ψ , where J/ψ → π +π -π 0, J/ψ → K +K -π 0 , and J / ψ → Kmore » $$0\\atop{S}$$ K ± π ∓ using a data sample of 519 fb -1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e +e - collider at center-of-mass energies at and near the Υ (nS) (n = 2 , 3 , 4) resonances. We measure the ratio of branching fractions R 1 = $$B(J/ψ →K^+K^- π^0)\\atop{B(J/ψ →π^+π^- π^0)}$$ and R 2= $$B(J/ψ →K^0_SK^±π^∓)\\atop{B(J/ψ →π^+π^- π^0)}$$. We perform Dalitz plot analyses of the three J/ψ decay modes and measure fractions for resonances contributing to the decays. We also analyze the J/ψ → $π^+π^- π^0$ decay using the Veneziano model. We observe structures compatible with the presence of ρ (1450) in all three J/ψ decay modes and measure the relative branching fraction: R (p(1450)) = $$Bp(1450)→K^+K^-)\\atop{B(p(1450)→π^+π^-)}$$ +0.307 ± 0.084 (stat) ± 0.082 (sys).« less

Light Meson Decays at BESIII

NASA Astrophysics Data System (ADS)

Fang, Shuangshi

2017-04-01

At present the world's largest sample of 1.3 billion J/ψ events was accumulated at the BESIII detector, which offers a unique place to study light meson decays. The recent results on the light meson decays are reviewed in this talk. An emphasis is put on the significant progresses on the study of η/η' decays, including Dalitz plot analysis of η/η' → πππ, observation of new decay modes (η' → π+π-π+(0)π-(0), η' → ρ±π∓, η' → γe+e- and η' → e+e-ω), study of η' → γπ+π- and search for the rare decay of η' → Kπ. In addition, a prospect on the Dalitz plot analysis of ω → π+π-π0 is presented.

Extracting the quark mixing phase γ from B±→K±π+π-, B0→Ksπ+π-, and B¯0→Ksπ+π-

NASA Astrophysics Data System (ADS)

Bediaga, Ignacio; Guerrer, Gabriel; de Miranda, Jussara M.

2007-10-01

We discuss some aspects of the search for CP asymmetry in the three body B decays, revealed through the interference among neighbor resonances in the Dalitz plot. We propose a competitive method to extract the CKM γ angle combining Dalitz plot amplitude analysis of B±→K±π+π- and untagged B0, B¯0→Ksπ+π-. The method also obtains the ratio and phase difference between the tree and penguin contributions from B0 and B¯0→K*±π∓ decays and the CP asymmetry between B0 and B¯0. From Monte Carlo studies of 100 K events for the neutral mesons, we show the possibility of measuring γ.

Optimizing sensitivity to γ with B0→D K+π-, D →KS0π+π- double Dalitz plot analysis

NASA Astrophysics Data System (ADS)

Craik, D.; Gershon, T.; Poluektov, A.

2018-03-01

Two of the most powerful methods currently used to determine the angle γ of the CKM Unitarity Triangle exploit B+→D K+, D →KS0π+π- decays and B0→D K+π-, D →K+K-, π+π- decays. It is possible to combine the strengths of both approaches in a "double Dalitz plot" analysis of B0→D K+π-, D →KS0π+π- decays. The potential sensitivity of such an analysis is investigated in the light of recently published experimental information on the B0→D K+π- decay. The formalism is also expanded, compared to previous discussions in the literature, to allow B0→D K+π- with any subsequent D decay to be included.

Charm Mixing and D Dalitz Analysis at BESIII

NASA Astrophysics Data System (ADS)

Sun, Shengsen; BESIII Collaboration

2016-04-01

We study D0D‾0 pairs produced in e+e- collisions at √{ s} = 3.773GeV using a data sample of 2.92 fb-1 collected with the BESIII detector. Using world-average values of external parameters, we obtain cosδKπ = 1.02 ± 0.11 ± 0.06 ± 0.01, δKπ is the strong phase difference between the doubly Cabibbo-suppressed process D‾0 →K-π+ and the Cabibbo-favored process D0 →K-π+. A measurement of the parameter yCP in D0 -D‾0 oscillations is performed by taking advantage of quantum coherence between pair-produced D0 and D‾0 mesons near threshold, the preliminary result is yCP = (- 1.6 ± 1.3 ± 0.6)%. An analysis of the D+ → KS0 π+π0 Dalitz plot is performed, the Dalitz plot is found to be well presented by a combination of six quasi-two-body decay channels [KS0 ρ+, KS0 ρ(1450) +, K ‾ * 0π+, K‾0(1430) 0π+, K ‾(1680) 0π+, κ‾0π+] plus a small nonresonant component. Using the fit fractions from this analysis, partial branching ratios are updated with higher precision than previous measurements.

Selected Topics on Hadronic B Decays From BaBar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suzuki, K.; /SLAC

Recent measurements of branching fractions and decay-rate asymmetries in charmless hadronic B decays at the BaBar experiment are presented. The selected topics include Dalitz plot analyses of B {yields} K{sup +} {pi}{sup -}{pi} and signal searches in B {yields} PP and PV, where isoscalar mesons are involved, and in B {yields} b{sub 1}P, P and V denote a pseudoscalar and vector meson, respectively. Several measurements in charmless hadronic B decays have indicated possible deviations from the theoretical predictions within the Standard Model. The measurements presented would contribute to searching for and resolving such puzzles.

Role of the a0(980), f0(980) resonances in η → 3π from the Khuri-Treiman formalism

NASA Astrophysics Data System (ADS)

Moussallam, B.; Albaladejo, M.

2016-11-01

The chiral expansion of the η → 3π decay amplitude at NLO fails to reproduce the recent high accuracy measurements of the Dalitz plot parameters. We reconsider the idea of employing the chiral expansion in an unphysical region surrounding the Adler zero and then deducing the amplitude in the physical region using the Khuri-Treiman dispersive formalism. We further present an extension of this formalism which takes into account KK¯ inelastic rescattering effects and thus provides a realistic description of the double a0(980), f0(980) resonance effect. We evaluate how the influence of these resonances propagates down to the low-energy decay region and show that it is significant, in particular for the η → 3π0 decay, and improve the agreement of the predicted Dalitz plot parameters with experiment.

Double-regge exchange limit for the γp→ K⁺K⁻p reaction

DOE PAGES

Shi, M.; Danilkin, I. V.; Fernández-Ramírez, C.; ...

2015-02-01

We apply the generalized Veneziano model (B₅ model) in the double-Regge exchange limit to the γp→K⁺K⁻p reaction. Four different cases defined by the possible combinations of the signature factors of leading Regge exchanges ((K *,a₂/f₂), (K *,ρ/ω), (K *₂,a₂/f₂), and (K *₂,ρ/ω)) have been simulated through the Monte Carlo method. Suitable event candidates for the double-Regge exchange high-energy limit were selected employing Van Hove plots as a better alternative to kinematical cuts in the K⁺K⁻p Dalitz plot. In this way we predict and analyze the double-Regge contribution to the K⁺K⁻p Dalitz plot, which constitutes one of the major backgrounds inmore » the search for strangeonia, hybrids and exotics using γp→K⁺K⁻p reaction. We expect that data currently under analysis, and that to come in the future, will allow verification of the double-Regge behavior and a better assessment of this component of the amplitude.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J.P.

We present the first results on the Dalitz-plot structure and improved measurements of the time-dependent CP-violation parameters of the process B{sup 0} {yields} K{sub S}{sup 0}K{sub S}{sup 0}K{sub S}{sup 0} obtained using 468 x 10{sup 6} B{bar B} decays collected with the BABAR detector at the PEP-II asymmetric-energy B factory at SLAC. The Dalitz-plot structure is probed by a time-integrated amplitude analysis that does not distinguish between B{sup 0} and {bar B}{sup 0} decays. We measure the total inclusive branching fraction {Beta}(B{sup 0} {yields} K{sub S}{sup 0}K{sub S}{sup 0}K{sub S}{sup 0}) = (6.19 {+-} 0.48 {+-} 0.15 {+-} 0.12) xmore » 10{sup -6}, where the first uncertainty is statistical, the second is systematic, and the third represents the Dalitz-plot signal model dependence. We also observe evidence for the intermediate resonant states f{sub 0}(980), f{sub 0}(1710), and f{sub 2}(2010). Their respective product branching fractions are measured to be (2.70{sub -1.19}{sup +1.25} {+-} 0.36 {+-} 1.17) x 10{sup -6}, (0.50{sub -0.24}{sup +0.46} {+-} 0.04 {+-} 0.10) x 10{sup -6}, and (0.54{sub -0.20}{sup +0.21} {+-} 0.03 {+-} 0.52) x 10{sup -6}. Additionally, we determine the mixing-induced CP-violation parameters to be S = -0.94{sub -0.21}{sup +0.24} {+-} 0.06 and C = -0.17 {+-} 0.18 {+-} 0.04, where the first uncertainty is statistical and the second is systematic. These values are in agreement with the standard model expectation.« less

Dalitz plot analysis of the decay D(+)-->K(-)pi(+)pi(+) and indication of a low-mass scalar Kpi resonance.

PubMed

Aitala, E M; Amato, S; Anjos, J C; Appel, J A; Ashery, D; Banerjee, S; Bediaga, I; Blaylock, G; Bracker, S B; Burchat, P R; Burnstein, R A; Carter, T; Carvalho, H S; Copty, N K; Cremaldi, L M; Darling, C; Denisenko, K; Devmal, S; Fernandez, A; Fox, G F; Gagnon, P; Göbel, C; Gounder, K; Halling, A M; Herrera, G; Hurvits, G; James, C; Kasper, P A; Kwan, S; Langs, D C; Leslie, J; Lundberg, B; Magnin, J; Massafferri, A; MayTal-Beck, S; Meadows, B; de Mello Neto, J R T; Mihalcea, D; Milburn, R H; de Miranda, J M; Napier, A; Nguyen, A; d'Oliveira, A B; O'Shaughnessy, K; Peng, K C; Perera, L P; Purohit, M V; Quinn, B; Radeztsky, S; Rafatian, A; Reay, N W; Reidy, J J; dos Reis, A C; Rubin, H A; Sanders, D A; Santha, A K S; Santoro, A F S; Schwartz, A J; Sheaff, M; Sidwell, R A; Slaughter, A J; Sokoloff, M D; Solano Salinas, C J; Stanton, N R; Stefanski, R J; Stenson, K; Summers, D J; Takach, S; Thorne, K; Tripathi, A K; Watanabe, S; Weiss-Babai, R; Wiener, J; Witchey, N; Wolin, E; Yang, S M; Yi, D; Yoshida, S; Zaliznyak, R; Zhang, C

2002-09-16

We study the Dalitz plot of the decay D(+)-->K(-)pi(+)pi(+) with a sample of 15090 events from Fermilab experiment E791. Modeling the decay amplitude as the coherent sum of known Kpi resonances and a uniform nonresonant term, we do not obtain an acceptable fit. If we allow the mass and width of the K(*)(0)(1430) to float, we obtain values consistent with those from PDG but the chi(2) per degree of freedom of the fit is still unsatisfactory. A good fit is found when we allow for the presence of an additional scalar resonance, with mass 797+/-19+/-43 MeV/c(2) and width 410+/-43+/-87 MeV/c(2). The mass and width of the K(*)(0)(1430) become 1459+/-7+/-5 MeV/c(2) and 175+/-12+/-12 MeV/c(2), respectively. Our results provide new information on the scalar sector in hadron spectroscopy.

Dalitz plot analysis of the D+→K-π+π+ decay

NASA Astrophysics Data System (ADS)

Bonvicini, G.; Cinabro, D.; Dubrovin, M.; Lincoln, A.; Naik, P.; Rademacker, J.; Asner, D. M.; Edwards, K. W.; Reed, J.; Briere, R. A.; Ferguson, T.; Tatishvili, G.; Vogel, H.; Watkins, M. E.; Rosner, J. L.; Alexander, J. P.; Cassel, D. G.; Duboscq, J. E.; Ehrlich, R.; Fields, L.; Gibbons, L.; Gray, R.; Gray, S. W.; Hartill, D. L.; Heltsley, B. K.; Hertz, D.; Hunt, J. M.; Kandaswamy, J.; Kreinick, D. L.; Kuznetsov, V. E.; Ledoux, J.; Mahlke-Krüger, H.; Mohapatra, D.; Onyisi, P. U. E.; Patterson, J. R.; Peterson, D.; Riley, D.; Ryd, A.; Sadoff, A. J.; Shi, X.; Stroiney, S.; Sun, W. M.; Wilksen, T.; Athar, S. B.; Patel, R.; Yelton, J.; Rubin, P.; Eisenstein, B. I.; Karliner, I.; Mehrabyan, S.; Lowrey, N.; Selen, M.; White, E. J.; Wiss, J.; Mitchell, R. E.; Shepherd, M. R.; Besson, D.; Pedlar, T. K.; Cronin-Hennessy, D.; Gao, K. Y.; Hietala, J.; Kubota, Y.; Klein, T.; Lang, B. W.; Poling, R.; Scott, A. W.; Zweber, P.; Dobbs, S.; Metreveli, Z.; Seth, K. K.; Tomaradze, A.; Libby, J.; Powell, A.; Wilkinson, G.; Ecklund, K. M.; Love, W.; Savinov, V.; Lopez, A.; Mendez, H.; Ramirez, J.; Ge, J. Y.; Miller, D. H.; Shipsey, I. P. J.; Xin, B.; Adams, G. S.; Anderson, M.; Cummings, J. P.; Danko, I.; Hu, D.; Moziak, B.; Napolitano, J.; He, Q.; Insler, J.; Muramatsu, H.; Park, C. S.; Thorndike, E. H.; Yang, F.; Artuso, M.; Blusk, S.; Khalil, S.; Li, J.; Mountain, R.; Nisar, S.; Randrianarivony, K.; Sultana, N.; Skwarnicki, T.; Stone, S.; Wang, J. C.; Zhang, L. M.

2008-09-01

We perform a Dalitz plot analysis of D+→K-π+π+ decay with the CLEO-c data set of 572pb-1 of e+e- collisions accumulated at the ψ(3770). This corresponds to 1.6×106 D+D- pairs from which we select 140 793 candidate events with a small background of 1.1%. We compare our results with previous measurements using the isobar model. We modify the isobar model with an improved description of some of the contributing resonances and get better agreement with our data. We also consider a quasi-model-independent approach and measure the magnitude and phase of the contributing Kπ S wave in the range of invariant masses from the threshold to the maximum in this decay. This gives an improved description of our data over the isobar model. Finally we allow for an isospin-two π+π+ S wave contribution and find that adding this to both the isobar model and the quasi-model-independent approach gives the best description of our data.

Dalitz plot analyses of J / ψ → π + π - π 0 , J / ψ → K + K - π 0 , and J / ψ → K s 0 K ± π ∓ produced via e + e - annihilation with initial-state radiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J. P.; Poireau, V.; Tisserand, V.

We study the processes e + e - → γ ISR J / ψ , where J / ψ → π + π - π 0 , J / ψ → K + K - π 0 , and J / ψ → Kmore » $$0\\atop{S}$$ K ± π ∓ using a data sample of 519 fb - 1 recorded with the BABAR detector operating at the SLAC PEP-II asymmetric-energy e + e - collider at center-of-mass energies at and near the Υ ( n S ) ( n = 2 , 3 , 4 ) resonances.« less

The End Point Tagger physics program at A2@MAMI

NASA Astrophysics Data System (ADS)

Steffen, Oliver

2017-04-01

The A2-Collaboration uses a beam of real photons from the tagged photon facility at the electron accelerator MAMI in Mainz, Germany, to study photo-produced mesons. A new tagging device allows access to the higher photon beam energy range of 1.4 to 1.6 GeV. A large dataset containing more than 6 million η' and roughly 29 million ω decays has been obtained. Analyses are ongoing, including a study of the cusp effect and Dalitz plot in η' → ηπ0π0, giving insight to the ππ scattering length and the structure of the ηππ system, as well as the measurement of the electromagnetic transition form factor in η' → e+e-γ, a cross section measurement of γp → 3π0, and branching ratio analyses of η' → ωγ and ω → ηγ.

REACTION $pi$$sup -$ + p $Yields$ $pi$$sup -$ + $pi$$sup +$ + n FROM 360 TO 800 Mev

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirz, J.; Schwartz, J.; Tripp, R.D.

1963-10-31

The reaction ceramic materia /sup -/ + p ons in pyrolyti ceramic materia /sup -/ + ceramic materia /sup +/ + n is sLLawrence Radiation Laboratory's 72-in. hydrogen bubble chamber. Events are located by scanning the pictures for ceramic materia /sup +/ tracks. Cross sections, Dalitz plots, and ceramic materia /sup +/ ceramic materia /sup -/ d please delete abstract 26339

Some Comments on the Decays of eta (550)

DOE R&D Accomplishments Database

Veltman, M.; Yellin, J.

1966-07-01

Various decay modes of the {eta}(500) are discussed. The relations, through SU{sub 3} and the Gell-Mann, Sharp, Wagner model, between the {eta}-decay modes and the modes {eta} {yields} {pi}{pi}{gamma), {pi}{sup 0} {yields} {gamma}{gamma} are investigated taking into account {eta}-{eta}{sup *} mixing. The present experimental values for the neutral branching ratios plus the shape of the {eta} {yields} {pi}{sup +}{pi}{sup {minus}}{pi}{sup 0} Dalitz plot are shown to require a 25% {vert_bar}{Delta}{rvec I}{vert_bar} = 3 contribution to the {eta} {yields} 3{pi} amplitude. The connection between a possible charge asymmetry in {eta} {yields} {pi}{sup +}{pi}{sup {minus}}{pi}{sup 0} and the branching ratio {Gamma}{sub {eta} {yields} {pi}{sup 0}e{sup +}e{sup {minus}}}/{Gamma}{sub {eta}}{sup all} is investigated in the framework of a model proposed earlier by several authors. It is shown that there is no conflict between the existing data and this model. The Dalitz plot distribution of {eta} {yields} {pi}{sup +}{pi}{sup {minus}}{pi}{sup 0} is discussed under various assumptions about the properties of the interaction responsible for the decay. (auth)

Convergence properties of η → 3π decays in chiral perturbation theory

NASA Astrophysics Data System (ADS)

Kolesár, Marián; Novotný, Jiří

2017-01-01

The convergence of the decay widths and some of the Dalitz plot parameters of the decay η → 3π seems problematic in low energy QCD. In the framework of resummed chiral perturbation theory, we explore the question of compatibility of experimental data with a reasonable convergence of a carefully defined chiral series. By treating the uncertainties in the higher orders statistically, we numerically generate a large set of theoretical predictions, which are then confronted with experimental information. In the case of the decay widths, the experimental values can be reconstructed for a reasonable range of the free parameters and thus no tension is observed, in spite of what some of the traditional calculations suggest. The Dalitz plot parameters a and d can be described very well too. When the parameters b and α are concerned, we find a mild tension for the whole range of the free parameters, at less than 2σ C.L. This can be interpreted in two ways - either some of the higher order corrections are indeed unexpectedly large or there is a specific configuration of the remainders, which is, however, not completely improbable.

Measurement of D0-D0 mixing parameters in D0 --> Ks pi+ pi- decays.

PubMed

Zhang, L M; Zhang, Z P; Adachi, I; Aihara, H; Aulchenko, V; Aushev, T; Bakich, A M; Balagura, V; Barberio, E; Bay, A; Belous, K; Bitenc, U; Bondar, A; Bozek, A; Bracko, M; Brodzicka, J; Browder, T E; Chang, P; Chao, Y; Chen, A; Chen, K-F; Chen, W T; Cheon, B G; Chiang, C-C; Cho, I-S; Choi, Y; Choi, Y K; Dalseno, J; Danilov, M; Dash, M; Drutskoy, A; Eidelman, S; Epifanov, D; Fratina, S; Gabyshev, N; Gokhroo, G; Golob, B; Ha, H; Haba, J; Hara, T; Hastings, N C; Hayasaka, K; Hayashii, H; Hazumi, M; Heffernan, D; Hokuue, T; Hoshi, Y; Hou, W-S; Hsiung, Y B; Hyun, H J; Iijima, T; Ikado, K; Inami, K; Ishikawa, A; Ishino, H; Itoh, R; Iwasaki, M; Iwasaki, Y; Joshi, N J; Kah, D H; Kaji, H; Kajiwara, S; Kang, J H; Kawai, H; Kawasaki, T; Kichimi, H; Kim, H J; Kim, H O; Kim, S K; Kim, Y J; Kinoshita, K; Korpar, S; Krizan, P; Krokovny, P; Kumar, R; Kuo, C C; Kuzmin, A; Kwon, Y-J; Lee, J S; Lee, M J; Lee, S E; Lesiak, T; Li, J; Limosani, A; Lin, S-W; Liu, Y; Liventsev, D; Matsumoto, T; Matyja, A; McOnie, S; Medvedeva, T; Mitaroff, W; Miyake, H; Miyata, H; Miyazaki, Y; Mizuk, R; Nagasaka, Y; Nakamura, I; Nakano, E; Nakao, M; Natkaniec, Z; Nishida, S; Nitoh, O; Ogawa, S; Ohshima, T; Okuno, S; Olsen, S L; Onuki, Y; Ostrowicz, W; Ozaki, H; Pakhlov, P; Pakhlova, G; Park, C W; Park, H; Peak, L S; Pestotnik, R; Piilonen, L E; Poluektov, A; Sahoo, H; Sakai, Y; Schneider, O; Schümann, J; Schwanda, C; Schwartz, A J; Seidl, R; Senyo, K; Sevior, M E; Shapkin, M; Shibuya, H; Shinomiya, S; Shiu, J-G; Shwartz, B; Singh, J B; Sokolov, A; Somov, A; Soni, N; Stanic, S; Staric, M; Stoeck, H; Sumisawa, K; Sumiyoshi, T; Suzuki, S; Tajima, O; Takasaki, F; Tamai, K; Tamura, N; Tanaka, M; Taylor, G N; Teramoto, Y; Tian, X C; Tikhomirov, I; Tsuboyama, T; Uehara, S; Ueno, K; Uglov, T; Unno, Y; Uno, S; Urquijo, P; Usov, Y; Varner, G; Vervink, K; Villa, S; Vinokurova, A; Wang, C H; Wang, M-Z; Wang, P; Watanabe, Y; Won, E; Yabsley, B D; Yamaguchi, A; Yamashita, Y; Yamauchi, M; Yuan, C Z; Zhang, C C; Zhilich, V; Zupanc, A

2007-09-28

We report a measurement of D0-D(0) mixing parameters in D(0) --> K(s)(0) pi(+) pi(-) decays using a time-dependent Dalitz-plot analysis. We first assume CP conservation and subsequently allow for CP violation. The results are based on 540 fb(-1) of data accumulated with the Belle detector at the KEKB e(+)e(-) collider. Assuming negligible CP violation, we measure the mixing parameters x = (0.80 +/- 0.29(-0.07-0.14)(+0.09+0.10))% and y = (0.33+/-0.24(-0.12-0.08)(+0.08+0.06))%, where the errors are statistical, experimental systematic, and systematic due to the Dalitz decay model, respectively. Allowing for CP violation, we obtain the CP-violating parameters |q / p| = 0.86(-0.29-0.03)(+0.30+0.06) +/- 0.08 and arg(q/p) = (-14(-18-3-4)(+16+5+2)) degrees .

Evidence for C P violation in B+→K*(892)+ π0 from a Dalitz plot analysis of B+→KS0 π+π0 decays

NASA Astrophysics Data System (ADS)

Lees, J. P.; Poireau, V.; Tisserand, V.; Grauges, E.; Palano, A.; Eigen, G.; Stugu, B.; Brown, D. N.; Kerth, L. T.; Kolomensky, Yu. G.; Lee, M. J.; Lynch, G.; Koch, H.; Schroeder, T.; Hearty, C.; Mattison, T. S.; McKenna, J. A.; So, R. Y.; Khan, A.; Blinov, V. E.; Buzykaev, A. R.; Druzhinin, V. P.; Golubev, V. B.; Kravchenko, E. A.; Onuchin, A. P.; Serednyakov, S. I.; Skovpen, Yu. I.; Solodov, E. P.; Todyshev, K. Yu.; Lankford, A. J.; Dey, B.; Gary, J. W.; Long, O.; Franco Sevilla, M.; Hong, T. M.; Kovalskyi, D.; Richman, J. D.; West, C. A.; Eisner, A. M.; Lockman, W. S.; Panduro Vazquez, W.; Schumm, B. A.; Seiden, A.; Chao, D. S.; Cheng, C. H.; Echenard, B.; Flood, K. T.; Hitlin, D. G.; Miyashita, T. S.; Ongmongkolkul, P.; Porter, F. C.; Röhrken, M.; Andreassen, R.; Huard, Z.; Meadows, B. T.; Pushpawela, B. G.; Sokoloff, M. D.; Sun, L.; Bloom, P. C.; Ford, W. T.; Gaz, A.; Smith, J. G.; Wagner, S. R.; Ayad, R.; Toki, W. H.; Spaan, B.; Bernard, D.; Verderi, M.; Playfer, S.; Bettoni, D.; Bozzi, C.; Calabrese, R.; Cibinetto, G.; Fioravanti, E.; Garzia, I.; Luppi, E.; Piemontese, L.; Santoro, V.; Calcaterra, A.; de Sangro, R.; Finocchiaro, G.; Martellotti, S.; Patteri, P.; Peruzzi, I. M.; Piccolo, M.; Rama, M.; Zallo, A.; Contri, R.; Monge, M. R.; Passaggio, S.; Patrignani, C.; Bhuyan, B.; Prasad, V.; Adametz, A.; Uwer, U.; Lacker, H. M.; Mallik, U.; Chen, C.; Cochran, J.; Prell, S.; Ahmed, H.; Gritsan, A. V.; Arnaud, N.; Davier, M.; Derkach, D.; Grosdidier, G.; Le Diberder, F.; Lutz, A. M.; Malaescu, B.; Roudeau, P.; Stocchi, A.; Wormser, G.; Lange, D. J.; Wright, D. M.; Coleman, J. P.; Fry, J. R.; Gabathuler, E.; Hutchcroft, D. E.; Payne, D. J.; Touramanis, C.; Bevan, A. J.; Di Lodovico, F.; Sacco, R.; Cowan, G.; Brown, D. N.; Davis, C. L.; Denig, A. G.; Fritsch, M.; Gradl, W.; Griessinger, K.; Hafner, A.; Schubert, K. R.; Barlow, R. J.; Lafferty, G. D.; Cenci, R.; Hamilton, B.; Jawahery, A.; Roberts, D. A.; Cowan, R.; Cheaib, R.; Patel, P. M.; Robertson, S. H.; Neri, N.; Palombo, F.; Cremaldi, L.; Godang, R.; Summers, D. J.; Simard, M.; Taras, P.; De Nardo, G.; Onorato, G.; Sciacca, C.; Raven, G.; Jessop, C. P.; LoSecco, J. M.; Honscheid, K.; Kass, R.; Margoni, M.; Morandin, M.; Posocco, M.; Rotondo, M.; Simi, G.; Simonetto, F.; Stroili, R.; Akar, S.; Ben-Haim, E.; Bomben, M.; Bonneaud, G. R.; Briand, H.; Calderini, G.; Chauveau, J.; Leruste, Ph.; Marchiori, G.; Ocariz, J.; Biasini, M.; Manoni, E.; Rossi, A.; Angelini, C.; Batignani, G.; Bettarini, S.; Carpinelli, M.; Casarosa, G.; Chrzaszcz, M.; Forti, F.; Giorgi, M. A.; Lusiani, A.; Oberhof, B.; Paoloni, E.; Rizzo, G.; Walsh, J. J.; Lopes Pegna, D.; Olsen, J.; Smith, A. J. S.; Anulli, F.; Faccini, R.; Ferrarotto, F.; Ferroni, F.; Gaspero, M.; Pilloni, A.; Piredda, G.; Bünger, C.; Dittrich, S.; Grünberg, O.; Hess, M.; Leddig, T.; Voß, C.; Waldi, R.; Adye, T.; Olaiya, E. O.; Wilson, F. F.; Emery, S.; Vasseur, G.; Aston, D.; Bard, D. J.; Cartaro, C.; Convery, M. R.; Dorfan, J.; Dubois-Felsmann, G. P.; Dunwoodie, W.; Ebert, M.; Field, R. C.; Fulsom, B. G.; Graham, M. T.; Hast, C.; Innes, W. R.; Kim, P.; Leith, D. W. G. S.; Lindemann, D.; Luitz, S.; Luth, V.; Lynch, H. L.; MacFarlane, D. B.; Muller, D. R.; Neal, H.; Perl, M.; Pulliam, T.; Ratcliff, B. N.; Roodman, A.; Schindler, R. H.; Snyder, A.; Su, D.; Sullivan, M. K.; Va'vra, J.; Wisniewski, W. J.; Wulsin, H. W.; Purohit, M. V.; Wilson, J. R.; Randle-Conde, A.; Sekula, S. J.; Bellis, M.; Burchat, P. R.; Puccio, E. M. T.; Alam, M. S.; Ernst, J. A.; Gorodeisky, R.; Guttman, N.; Peimer, D. R.; Soffer, A.; Spanier, S. M.; Ritchie, J. L.; Schwitters, R. F.; Izen, J. M.; Lou, X. C.; Bianchi, F.; De Mori, F.; Filippi, A.; Gamba, D.; Lanceri, L.; Vitale, L.; Martinez-Vidal, F.; Oyanguren, A.; Villanueva-Perez, P.; Albert, J.; Banerjee, Sw.; Beaulieu, A.; Bernlochner, F. U.; Choi, H. H. F.; King, G. J.; Kowalewski, R.; Lewczuk, M. J.; Lueck, T.; Nugent, I. M.; Roney, J. M.; Sobie, R. J.; Tasneem, N.; Gershon, T. J.; Harrison, P. F.; Latham, T. E.; Band, H. R.; Dasu, S.; Pan, Y.; Prepost, R.; Wu, S. L.; BaBar Collaboration

2017-10-01

We report a Dalitz plot analysis of charmless hadronic decays of charged B mesons to the final state KS0π+π0 using the full BABAR data set of 470.9 ±2.8 million B B ¯ events collected at the Υ (4 S ) resonance. We measure the overall branching fraction and C P asymmetry to be B (B+→K0π+π0) =(31.8 ±1.8 ±2. 1-0.0+6.0 ) ×10-6 and AC P(B+→K0π+π0) =0.07 ±0.05 ±0.0 3-0.03+0.02 , where the uncertainties are statistical, systematic, and due to the signal model, respectively. This is the first measurement of the branching fraction for B+→K0π+π0. We find first evidence of a C P asymmetry in B+→K*(892 )+π0decays: AC P(B+→K*(892 )+π0) =-0.52 ±0.14 ±0.0 4-0.02+0.04 . The significance of this asymmetry, including systematic and model uncertainties, is 3.4 standard deviations. We also measure the branching fractions and C P asymmetries for three other intermediate decay modes.

Recent Results from KLOE-2

NASA Astrophysics Data System (ADS)

Krzemien, Wojciech

The most recent results from the KLOE experiment are presented, covering: the measurement of the running fine-structure constant αem, the Dalitz plot measurement of η → π+π‑π0, the search of a U boson, tests of discrete symmetries and quantum coherence. The KLOE-2 Collaboration will take data until mid 2018 aiming to collect 5 fb1 increasing the data set, in order to produce new precision measurements and continue studies of fundamental symmetries and New Physics.

Evidence for C P violation in B + → K * ( 892 ) + π 0 from a Dalitz plot analysis of B + → K S 0 π + π 0 decays

DOE PAGES

Lees, J. P.; Poireau, V.; Tisserand, V.; ...

2017-10-02

We report a Dalitz plot analysis of charmless hadronic decays of charged B mesons to the final state K 0 Sπ +π 0 using the full BABAR data set of 470.9 ± 2.8 million B¯B events collected at the Υ(4S) resonance. We measure the overall branching fraction and CP asymmetry to be B(B + → K 0π +π 0) = (31.8 ± 1.8 ± 2.1 +6.0 –0.0) × 10 –6 and ACP(B + → K 0π +π 0) = 0.07 ± 0.05 ± 0.03 +0.02 –0.03, where the uncertainties are statistical, systematic, and due to the signal model, respectively. Thismore » is the first measurement of the branching fraction for B + → K 0π +π 0. We find first evidence of a CP asymmetry in B + → K*(892) +π 0 decays: ACP(B + → K*(892) +π 0) = –0.52 ± 0.14 ± 0.04 +0.04 –0.02. The significance of this asymmetry, including systematic and model uncertainties, is 3.4 standard deviations. As a result, we also measure the branching fractions and CP asymmetries for three other intermediate decay modes.« less

Evidence for C P violation in B + → K * ( 892 ) + π 0 from a Dalitz plot analysis of B + → K S 0 π + π 0 decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J. P.; Poireau, V.; Tisserand, V.

We report a Dalitz plot analysis of charmless hadronic decays of charged B mesons to the final state K 0 Sπ +π 0 using the full BABAR data set of 470.9 ± 2.8 million B¯B events collected at the Υ(4S) resonance. We measure the overall branching fraction and CP asymmetry to be B(B + → K 0π +π 0) = (31.8 ± 1.8 ± 2.1 +6.0 –0.0) × 10 –6 and ACP(B + → K 0π +π 0) = 0.07 ± 0.05 ± 0.03 +0.02 –0.03, where the uncertainties are statistical, systematic, and due to the signal model, respectively. Thismore » is the first measurement of the branching fraction for B + → K 0π +π 0. We find first evidence of a CP asymmetry in B + → K*(892) +π 0 decays: ACP(B + → K*(892) +π 0) = –0.52 ± 0.14 ± 0.04 +0.04 –0.02. The significance of this asymmetry, including systematic and model uncertainties, is 3.4 standard deviations. As a result, we also measure the branching fractions and CP asymmetries for three other intermediate decay modes.« less

Dispersive analysis of ω/Φ → 3π, πγ*

DOE PAGES

Danilkin, Igor V.; Fernandez Ramirez, Cesar; Guo, Peng; ...

2015-05-01

The decays ω/Φ → 3π are considered in the dispersive framework that is based on the isobar decomposition and subenergy unitarity. The inelastic contributions are parametrized by the power series in a suitably chosen conformal variable that properly accounts for the analytic properties of the amplitude. The Dalitz plot distributions and integrated decay widths are presented. Our results indicate that the final- state interactions may be sizable. As a further application of the formalism we also compute the electromagnetic transition form factors of ω/Φ → π⁰γ*.

Addendum to Radiative corrections to the Dalitz plot of semileptonic decays of neutral baryons with light or charm quarks''

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martinez, A.; Tun, D.M.; Garcia, A.

1994-08-01

We show that the radiative corrections containing terms up to order [alpha][ital q]/[pi][ital M][sub 1] for unpolarized semileptonic decays of baryons with positron emission can be obtained by simply reversing the sign of the axial-vector form factors in the corresponding final expressions of such decays with electron emission. This rule is valid regardless of the final kinematical variables chosen and of the particular Lorentz frame in which the final results are required.

Symmetry relations in charmless B{yields}PPP decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gronau, Michael; Rosner, Jonathan L.; Enrico Fermi Institute and Department of Physics, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637

2005-11-01

Strangeness-changing decays of B mesons to three-body final states of pions and kaons are studied, assuming that they are dominated by a {delta}I=0 penguin amplitude with flavor structure b{yields}s. Numerous isospin relations for B{yields}K{pi}{pi} and for underlying quasi-two-body decays are compared successfully with experiment, in some cases resolving ambiguities in fitting resonance parameters. The only exception is a somewhat small branching ratio noted in B{sup 0}{yields}K*{sup 0}{pi}{sup 0}, interpreted in terms of destructive interference between a penguin amplitude and an enhanced electroweak penguin contribution. Relations for B decays into three kaons are derived in terms of final states involving K{submore » S} or K{sub L}, assuming that {phi}K-subtracted decay amplitudes are symmetric in K and K, as has been observed experimentally. Rates due to nonresonant backgrounds are studied using a simple model, which may reduce discrete ambiguities in Dalitz plot analyses.« less

Dalitz plot analysis of the decay B 0 ( B ¯ 0 ) → K ± π ∓ π 0

DOE PAGES

Aubert, B.; Bona, M.; Karyotakis, Y.; ...

2008-09-12

Here, we report a Dalitz-plot analysis of the charmless hadronic decays of neutral B mesons to K ± π ∓ π 0 . With a sample of ( 231.8 ± 2.6 ) × 10 6 Υ ( 4 S ) → Bmore » $$\\bar{B}$$ decays collected by the BABAR detector at the PEP-II asymmetric-energy B Factory at SLAC, we measure the magnitudes and phases of the intermediate resonant and nonresonant amplitudes for B 0 and $$\\bar{B}$$ 0 decays and determine the corresponding C P -averaged branching fractions and charge asymmetries. Furthermore, we measure the inclusive branching fraction and C P -violating charge asymmetry and found it to be B ( B 0 → K + π - π 0 ) = ( 35.7$$+2.6\\atop{-1.5}$$ + 2.6 - 1.5 ± 2.2 ) × 10 - 6 and A C P = - 0.030 $$+ 0.045\\atop{- 0.051}$$ ± 0.055 where the first errors are statistical and the second systematic. We observe the decay B 0 → K * 0 ( 892 ) π 0 with the branching fraction B ( B 0 → K * 0 ( 892 ) π 0 ) = ( 3.6 $$+ 0.7\\atop- {0.8}$$ ± 0.4 ) × 10 - 6 . This measurement differs from zero by 5.6 standard deviations (including the systematic uncertainties). The selected sample also contains B 0 → $$\\bar{D}$$ 0 π 0 decays where $$\\bar{D}$$ 0 → K + π - , and we measure B ( B 0 → $$\\bar{D}$$ 0π 0 ) = ( 2.93 ± 0.17 ± 0.18 ) × 10 - 4 .« less

Impact on photon/phi 3 meson measurement from CLEO-c binned neutral D meson decaying to neutral kaon(short,long) positive pion negative pion Dalitz analysis

NASA Astrophysics Data System (ADS)

He, Qing

The Dalitz plot analysis of the three-body decay D˜0 → K0S pi+pi-- (D0 or D0) from the B+/- → DK+/- process provides today the best measurement of the CKM angle gamma/φ3. However, the unbinned D˜0 → K0S Dalitz analysis is sensitive to the choice of the model used to describe the three-body decay, which introduces 7° ˜ 10° uncertainty on gamma determination. For LHCb and future Super-B factories, this uncertainty will become a major limitation. A model independent approach has been proposed and the quantum correlated D0/ D0 data produced at the resonance psi(3770) can provide important information on the strong phase difference between D 0 → K0S pi+pi-- and D 0 → K0S pi+pi-- processes. Using the 818 pb-1 data collected by the CLEO-c detector at the Cornell Electron Storage Ring, we measure the strong phase parameters, c i, si, using fully reconstructed D0 D0 pairs with K0S pi+pi-- vs. flavor states, CP eigenstates and double K0S pi+pi-- samples. We also include K0L pi+pi-- data to further improve the determination of ci and si in a global fit. The ci and si results for the 8 phase bin case are shown in the following table. With the ci, si measurements from CLEO, the uncertainty of gamma determination can be lowered down to about 2° if one assumes plenty of B+/- → D˜K +/- decays.* *Please refer to dissertation for diagrams.

B and Bs decays into three pseudoscalar mesons and the determination of the angle γ of the unitarity triangle

NASA Astrophysics Data System (ADS)

Deandrea, A.; Gatto, R.; Ladisa, M.; Nardulli, G.; Santorelli, P.

2000-12-01

We reconsider two classical proposals for the determination of the angle γ of the unitarity triangle: B+/--->χc0π+/--->π+π-π+/- and Bs-->ρ0KS-->π+π-KS. We point out the relevance, in both cases, of nonresonant amplitudes, where the π+π- pair is produced by weak decay of a B* (JP=1-) or B0 (JP=0+) off-shell meson. In particular, for the B decay channel, the inclusion of the B0 pole completes some previous analyses and confirms their conclusions, provided a suitable cut in the Dalitz plot is performed; for the Bs decay the inclusion of the B*, B0 amplitudes enhances the role of the tree diagrams as compared to penguin amplitudes, which makes the theoretical uncertainty related to the Bs-->ρ0KS decay process less significant. While the first method is affected by theoretical uncertainties, the second one is cleaner, but its usefulness will depend on the available number of events to perform the analysis.

Extended chiral Khuri-Treiman formalism for η → 3π and the role of the a_0(980), f_0(980) resonances

NASA Astrophysics Data System (ADS)

Albaladejo, M.; Moussallam, B.

2017-08-01

Recent experiments on η → 3π decays have provided an extremely precise knowledge of the amplitudes across the Dalitz region which represent stringent constraints on theoretical descriptions. We reconsider an approach in which the low-energy chiral expansion is assumed to be optimally convergent in an unphysical region surrounding the Adler zero, and the amplitude in the physical region is uniquely deduced by an analyticity-based extrapolation using the Khuri-Treiman dispersive formalism. We present an extension of the usual formalism which implements the leading inelastic effects from the K\\bar{K} channel in the final-state π π interaction as well as in the initial-state η π interaction. The constructed amplitude has an enlarged region of validity and accounts in a realistic way for the influence of the two light scalar resonances f_0(980) and a_0(980) in the dispersive integrals. It is shown that the effect of these resonances in the low-energy region of the η → 3π decay is not negligible, in particular for the 3π ^0 mode, and improves the description of the energy variation across the Dalitz plot. Some remarks are made on the scale dependence and the value of the double quark mass ratio Q.

Measured Correlated Motion of theThree Body Coulomb Interacting System H^+ + H^+ + H^-

NASA Astrophysics Data System (ADS)

Wiese, L. M.

1998-05-01

The problem of three bodies interacting through a 1/r potential is a fundamental problem of physics. While its longstanding fame stems from its application to celestial mechanics, in atomic physics its importance arises from application to Coulomb-interacting systems, in which all three bodies carry some net charge. Because the three bodies interact through long range Coulomb forces over their entire path, their motion can be highly correlated. The effect of the interaction among the three bodies and any resulting correlated motion is reflected in how the available energy is ultimately shared among the three particles. By experimentally determining the energy sharing in a three body system, we can gain insight into the interactions governing the system. For the three body Coulomb interacting system of H^+ + H^+ + H^-, we have measured the partitioning of available center of mass (c.m.) energy among the particles when the system is in a near collinear configuration. By colliding 4 keV H_3^+ with a He target gas cell, we produce the H^+ + H^+ + H^- system a few eV above the dissociative limit. All three fragments are laboratory energy and angle resolved. By detecting all three in triple coincidence, we determine unambiguously the final state dynamics for each triply coincident event. Transforming our results to the c.m. frame, we determine the partitioning of available energy among the three particles. We have modified the Dalitz plot of high energy physics to elucidate correlations in the motion of any three body atomic system. Correlated motion in the H^+ + H^+ + H^- system is indicated by a nonuniform distribution on the Dalitz plot. For the near collinear breakup of H_3^+, we have observed the H^- to reside anywhere between the two H^+, from the Coulomb saddle point to the near vicinity of a proton. This work is supported by NSF Grant Number 9419505.

Measurement of CP-Violating Asymmetries in B0 to (rho pi)0 Using a Time-Dependent Dalitz Plot Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, J.

We present the preliminary measurement of CP-violating asymmetries in B{sup 0} {yields} ({rho}{pi}){sup 0} {yields} {pi}{sup +}{pi}{sup -}{pi}{sup 0} decays using a time-dependent Dalitz plot analysis. The results are obtained from a data sample of 213 million {Upsilon}(4S) {yields} B{bar B} decays, collected by the BABAR detector at the PEP-II asymmetric-energy B Factory at SLAC. This analysis extends the narrow-rho quasi-two-body approximation used in the previous analysis, by taking into account the interference between the rho resonances of the three charges. We measure 16 coefficients of the bilinear form factor terms occurring in the time-dependent decay rate of the B{supmore » 0} meson with the use of a maximum-likelihood fit. We derive the physically relevant quantities from these coefficients. We measure the direct CP-violation parameters A{sub {rho}{pi}} = -0.088 {+-} 0.049 {+-} 0.013 and C = 0.34 {+-} 0.11 {+-} 0.05, where the first errors are statistical and the second systematic. For the mixing-induced CP-violation parameter we find S = -0.10 {+-} 0.14 {+-} 0.04, and for the dilution and strong phase shift parameters respectively, we obtain {Delta}C = 0.15 {+-} 0.11 {+-} 0.03 and {Delta}S = 0.22 {+-} 0.15 {+-} 0.03. For the angle alpha of the Unitarity Triangle we measure (113{sub -17}{sup +27} {+-} 6){sup o}, while only a weak constraint is achieved at the significance level of more than two standard deviations. Finally, for the relative strong phase {delta}{sub {+-}} between the B{sup 0} {yields} {rho}{sup -}{pi}{sup +} and B{sup 0} {yields} {rho}{sup +}{pi}{sup -} transitions we find (-67{sub -31}{sup +28} {+-} 7) deg, with a similarly weak constraint at two standard deviations and beyond.« less

Dispersion relations for η '→ η π π

NASA Astrophysics Data System (ADS)

Isken, Tobias; Kubis, Bastian; Schneider, Sebastian P.; Stoffer, Peter

2017-07-01

We present a dispersive analysis of the decay amplitude for η '→ η π π that is based on the fundamental principles of analyticity and unitarity. In this framework, final-state interactions are fully taken into account. Our dispersive representation relies only on input for the {π π } and {π }η scattering phase shifts. Isospin symmetry allows us to describe both the charged and neutral decay channel in terms of the same function. The dispersion relation contains subtraction constants that cannot be fixed by unitarity. We determine these parameters by a fit to Dalitz-plot data from the VES and BES-III experiments. We study the prediction of a low-energy theorem and compare the dispersive fit to variants of chiral perturbation theory.

Three-body final state interaction in η → 3π updated

DOE PAGES

Guo, P.; Danilkin, I. V.; Fernandez-Ramirez, C.; ...

2017-06-07

In view of the recent high-statistic KLOE-2 data for themore » $$\\eta \\to \\pi^+ \\pi^- \\pi^0$$ decay, a new determination of the quark mass double ratio has been done. Our approach relies on a unitary dispersive model that takes into account rescattering effects between three pions. The latter is essential to reproduce the Dalitz plot distribution. A simultaneous description of the KLOE-2 and WASA-at-COSY data is achieved in terms of just two real parameters. From a global fit, we determine $$Q=21.6 \\pm 0.4$$. Here, the predicted slope parameter for the neutral channel $$\\alpha=-0.025\\pm 0.004$$ is in a reasonable agreement with the PDG average value.« less

Highlights on Hadronic Physics at KLOE

NASA Astrophysics Data System (ADS)

Giovannella, S.

2006-11-01

The KLOE experiment has just collected 2.5 fb-1 of e+e- collisions at center of mass energy around the φ mass. Radiative decays are used to produce large statistical samples of light scala and pseudoscalar mesons. The analysis of the first 450 pb-1 is almost completed. For the scala sector we have investigated the properties of these particles by studying their invariant mass shapes or the event density in the Dalitz plot. With the same data set, the η mass and the ratio BR(φ → η'γ)/BR(φ → ηγ) have been measured. From this last quantity we extract the most precise determination of the η/η' mixing angle, which is strictly related to the η' gluon content.

High-statistics measurement of the η →3 π0 decay at the Mainz Microtron

NASA Astrophysics Data System (ADS)

Prakhov, S.; Abt, S.; Achenbach, P.; Adlarson, P.; Afzal, F.; Aguar-Bartolomé, P.; Ahmed, Z.; Ahrens, J.; Annand, J. R. M.; Arends, H. J.; Bantawa, K.; Bashkanov, M.; Beck, R.; Biroth, M.; Borisov, N. S.; Braghieri, A.; Briscoe, W. J.; Cherepnya, S.; Cividini, F.; Collicott, C.; Costanza, S.; Denig, A.; Dieterle, M.; Downie, E. J.; Drexler, P.; Ferretti Bondy, M. I.; Fil'kov, L. V.; Fix, A.; Gardner, S.; Garni, S.; Glazier, D. I.; Gorodnov, I.; Gradl, W.; Gurevich, G. M.; Hamill, C. B.; Heijkenskjöld, L.; Hornidge, D.; Huber, G. M.; Käser, A.; Kashevarov, V. L.; Kay, S.; Keshelashvili, I.; Kondratiev, R.; Korolija, M.; Krusche, B.; Lazarev, A.; Lisin, V.; Livingston, K.; Lutterer, S.; MacGregor, I. J. D.; Manley, D. M.; Martel, P. P.; McGeorge, J. C.; Middleton, D. G.; Miskimen, R.; Mornacchi, E.; Mushkarenkov, A.; Neganov, A.; Neiser, A.; Oberle, M.; Ostrick, M.; Otte, P. B.; Paudyal, D.; Pedroni, P.; Polonski, A.; Ron, G.; Rostomyan, T.; Sarty, A.; Sfienti, C.; Sokhoyan, V.; Spieker, K.; Steffen, O.; Strakovsky, I. I.; Strandberg, B.; Strub, Th.; Supek, I.; Thiel, A.; Thiel, M.; Thomas, A.; Unverzagt, M.; Usov, Yu. A.; Wagner, S.; Walford, N. K.; Watts, D. P.; Werthmüller, D.; Wettig, J.; Witthauer, L.; Wolfes, M.; Zana, L. A.; A2 Collaboration at MAMI

2018-06-01

The largest, at the moment, statistics of 7 ×106η →3 π0 decays, based on 6.2 ×107η mesons produced in the γ p →η p reaction, has been accumulated by the A2 Collaboration at the Mainz Microtron, MAMI. It allowed a detailed study of the η →3 π0 dynamics beyond its conventional parametrization with just the quadratic slope parameter α and enabled, for the first time, a measurement of the second-order term and a better understanding of the cusp structure in the neutral decay. The present data are also compared to recent theoretical calculations that predict a nonlinear dependence along the quadratic distance from the Dalitz-plot center.

High-statistics measurement of the η → 3 π 0 decay at the Mainz Microtron

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prakhov, S.; Abt, S.; Achenbach, P.

Here, the largest, at the moment, statistics of 7 × 10 6 η → 3π 0 decays, based on 6.2 × 10 7 η mesons produced in the γp → ηp reaction, has been accumulated by the A2 Collaboration at the Mainz Microtron, MAMI. It allowed a detailed study of the η → 3π 0 dynamics beyond its conventional parametrization with just the quadratic slope parameter α and enabled, for the first time, a mea- surement of the second-order term and a better understanding of the cusp structure in the neutral decay. The present data are also compared to recentmore » theoretical calculations that predict a nonlinear dependence along the quadratic distance from the Dalitz-plot center.« less

Hadronic three-body decays of B mesons

NASA Astrophysics Data System (ADS)

Cheng, Hai-Yang

2016-04-01

Hadronic three-body decays of B mesons receive both resonant and nonresonant contributions. Dominant nonresonant contributions to tree-dominated three-body decays arise from the b → u tree transition which can be evaluated using heavy meson chiral perturbation theory valid in the soft meson limit. For penguin-dominated decays, nonresonant signals come mainly from the penguin amplitude governed by the matrix elements of scalar densities . The intermediate vector meson contributions to three-body decays are identified through the vector current, while the scalar meson resonances are mainly associated with the scalar density. We discuss inclusive and regional direct CP asymmetries. In the low mass regions of the Dalitz plot, we find that the regional CP violation is indeed largely enhanced with respect to the inclusive one.

Dispersion relations for $$\\eta '\\rightarrow \\eta \\pi \\pi $$

DOE Office of Scientific and Technical Information (OSTI.GOV)

Isken, Tobias; Kubis, Bastian; Schneider, Sebastian P.

Here, we present a dispersive analysis of the decay amplitude for η' → ηππ that is based on the fundamental principles of analyticity and unitarity. In this framework, final-state interactions are fully taken into account. Our dispersive representation relies only on input for the ππ and πη scattering phase shifts. Isospin symmetry allows us to describe both the charged and neutral decay channel in terms of the same function. The dispersion relation contains subtraction constants that cannot be fixed by unitarity.We determine these parameters by a fit to Dalitz-plot data from the VES and BES-III experiments. We study the predictionmore » of a low-energy theorem and compare the dispersive fit to variants of chiral perturbation theory.« less

High-statistics measurement of the η → 3 π 0 decay at the Mainz Microtron

DOE PAGES

Prakhov, S.; Abt, S.; Achenbach, P.; ...

2018-06-07

Here, the largest, at the moment, statistics of 7 × 10 6 η → 3π 0 decays, based on 6.2 × 10 7 η mesons produced in the γp → ηp reaction, has been accumulated by the A2 Collaboration at the Mainz Microtron, MAMI. It allowed a detailed study of the η → 3π 0 dynamics beyond its conventional parametrization with just the quadratic slope parameter α and enabled, for the first time, a mea- surement of the second-order term and a better understanding of the cusp structure in the neutral decay. The present data are also compared to recentmore » theoretical calculations that predict a nonlinear dependence along the quadratic distance from the Dalitz-plot center.« less

Dispersion relations for $$\\eta '\\rightarrow \\eta \\pi \\pi $$

DOE PAGES

Isken, Tobias; Kubis, Bastian; Schneider, Sebastian P.; ...

2017-07-21

Here, we present a dispersive analysis of the decay amplitude for η' → ηππ that is based on the fundamental principles of analyticity and unitarity. In this framework, final-state interactions are fully taken into account. Our dispersive representation relies only on input for the ππ and πη scattering phase shifts. Isospin symmetry allows us to describe both the charged and neutral decay channel in terms of the same function. The dispersion relation contains subtraction constants that cannot be fixed by unitarity.We determine these parameters by a fit to Dalitz-plot data from the VES and BES-III experiments. We study the predictionmore » of a low-energy theorem and compare the dispersive fit to variants of chiral perturbation theory.« less

Radiative corrections to double-Dalitz decays revisited

NASA Astrophysics Data System (ADS)

Kampf, Karol; Novotný, Jiři; Sanchez-Puertas, Pablo

2018-03-01

In this study, we revisit and complete the full next-to-leading order corrections to pseudoscalar double-Dalitz decays within the soft-photon approximation. Comparing to the previous study, we find small differences, which are nevertheless relevant for extracting information about the pseudoscalar transition form factors. Concerning the latter, these processes could offer the opportunity to test them—for the first time—in their double-virtual regime.

Measurement of the matrix elements for the decays η'→η π+π- and η'→η π0π0

NASA Astrophysics Data System (ADS)

Ablikim, M.; Achasov, M. N.; Ahmed, S.; Albrecht, M.; Amoroso, A.; An, F. F.; An, Q.; Bai, J. Z.; Bai, Y.; Bakina, O.; Baldini Ferroli, R.; Ban, Y.; Bennett, D. W.; Bennett, J. V.; Berger, N.; Bertani, M.; Bettoni, D.; Bian, J. M.; Bianchi, F.; Boger, E.; Boyko, I.; Briere, R. A.; Cai, H.; Cai, X.; Cakir, O.; Calcaterra, A.; Cao, G. F.; Cetin, S. A.; Chai, J.; Chang, J. F.; Chelkov, G.; Chen, G.; Chen, H. S.; Chen, J. C.; Chen, M. L.; Chen, S. J.; Chen, X. R.; Chen, Y. B.; Chu, X. K.; Cibinetto, G.; Dai, H. L.; Dai, J. P.; Dbeyssi, A.; Dedovich, D.; Deng, Z. Y.; Denig, A.; Denysenko, I.; Destefanis, M.; de Mori, F.; Ding, Y.; Dong, C.; Dong, J.; Dong, L. Y.; Dong, M. Y.; Dorjkhaidav, O.; Dou, Z. L.; Du, S. X.; Duan, P. F.; Fang, J.; Fang, S. S.; Fang, X.; Fang, Y.; Farinelli, R.; Fava, L.; Fegan, S.; Feldbauer, F.; Felici, G.; Feng, C. Q.; Fioravanti, E.; Fritsch, M.; Fu, C. D.; Gao, Q.; Gao, X. L.; Gao, Y.; Gao, Y. G.; Gao, Z.; Garzia, I.; Goetzen, K.; Gong, L.; Gong, W. X.; Gradl, W.; Greco, M.; Gu, M. H.; Gu, S.; Gu, Y. T.; Guo, A. Q.; Guo, L. B.; Guo, R. P.; Guo, Y. P.; Haddadi, Z.; Han, S.; Hao, X. Q.; Harris, F. A.; He, K. L.; He, X. Q.; Heinsius, F. H.; Held, T.; Heng, Y. K.; Holtmann, T.; Hou, Z. L.; Hu, C.; Hu, H. M.; Hu, T.; Hu, Y.; Huang, G. S.; Huang, J. S.; Huang, X. T.; Huang, X. Z.; Huang, Z. L.; Hussain, T.; Ikegami Andersson, W.; Ji, Q.; Ji, Q. P.; Ji, X. B.; Ji, X. L.; Jiang, X. S.; Jiang, X. Y.; Jiao, J. B.; Jiao, Z.; Jin, D. P.; Jin, S.; Jin, Y.; Johansson, T.; Julin, A.; Kalantar-Nayestanaki, N.; Kang, X. L.; Kang, X. S.; Kavatsyuk, M.; Ke, B. C.; Khan, T.; Khoukaz, A.; Kiese, P.; Kliemt, R.; Koch, L.; Kolcu, O. B.; Kopf, B.; Kornicer, M.; Kuemmel, M.; Kuhlmann, M.; Kupsc, A.; Kühn, W.; Lange, J. S.; Lara, M.; Larin, P.; Lavezzi, L.; Leithoff, H.; Leng, C.; Li, C.; Li, Cheng; Li, D. M.; Li, F.; Li, F. Y.; Li, G.; Li, H. B.; Li, H. J.; Li, J. C.; Li, Jin; Li, K.; Li, K.; Li, K. J.; Li, Lei; Li, P. L.; Li, P. R.; Li, Q. Y.; Li, T.; Li, W. D.; Li, W. G.; Li, X. L.; Li, X. N.; Li, X. Q.; Li, Z. B.; Liang, H.; Liang, Y. F.; Liang, Y. T.; Liao, G. R.; Lin, D. X.; Liu, B.; Liu, B. J.; Liu, C. X.; Liu, D.; Liu, F. H.; Liu, Fang; Liu, Feng; Liu, H. B.; Liu, H. H.; Liu, H. H.; Liu, H. M.; Liu, J. B.; Liu, J. P.; Liu, J. Y.; Liu, K.; Liu, K. Y.; Liu, Ke; Liu, L. D.; Liu, P. L.; Liu, Q.; Liu, S. B.; Liu, X.; Liu, Y. B.; Liu, Z. A.; Liu, Zhiqing; Long, Y. F.; Lou, X. C.; Lu, H. J.; Lu, J. G.; Lu, Y.; Lu, Y. P.; Luo, C. L.; Luo, M. X.; Luo, X. L.; Lyu, X. R.; Ma, F. C.; Ma, H. L.; Ma, L. L.; Ma, M. M.; Ma, Q. M.; Ma, T.; Ma, X. N.; Ma, X. Y.; Ma, Y. M.; Maas, F. E.; Maggiora, M.; Magnoni, A. S.; Malik, Q. A.; Mao, Y. J.; Mao, Z. P.; Marcello, S.; Meng, Z. X.; Messchendorp, J. G.; Mezzadri, G.; Min, J.; Min, T. J.; Mitchell, R. E.; Mo, X. H.; Mo, Y. J.; Morales Morales, C.; Morello, G.; Muchnoi, N. Yu.; Muramatsu, H.; Mustafa, A.; Nefedov, Y.; Nerling, F.; Nikolaev, I. B.; Ning, Z.; Nisar, S.; Niu, S. L.; Niu, X. Y.; Olsen, S. L.; Ouyang, Q.; Pacetti, S.; Pan, Y.; Papenbrock, M.; Patteri, P.; Pelizaeus, M.; Pellegrino, J.; Peng, H. P.; Peters, K.; Pettersson, J.; Ping, J. L.; Ping, R. G.; Poling, R.; Prasad, V.; Qi, H. R.; Qi, M.; Qian, S.; Qiao, C. F.; Qin, N.; Qin, X.; Qin, X. S.; Qin, Z. H.; Qiu, J. F.; Rashid, K. H.; Redmer, C. F.; Richter, M.; Ripka, M.; Rolo, M.; Rong, G.; Rosner, Ch.; Ruan, X. D.; Sarantsev, A.; Savrié, M.; Schnier, C.; Schoenning, K.; Shan, W.; Shao, M.; Shen, C. P.; Shen, P. X.; Shen, X. Y.; Sheng, H. Y.; Song, J. J.; Song, W. M.; Song, X. Y.; Sosio, S.; Sowa, C.; Spataro, S.; Sun, G. X.; Sun, J. F.; Sun, L.; Sun, S. S.; Sun, X. H.; Sun, Y. J.; Sun, Y. K.; Sun, Y. Z.; Sun, Z. J.; Sun, Z. T.; Tang, C. J.; Tang, G. Y.; Tang, X.; Tapan, I.; Tiemens, M.; Tsednee, B. T.; Uman, I.; Varner, G. S.; Wang, B.; Wang, B. L.; Wang, D.; Wang, D. Y.; Wang, Dan; Wang, K.; Wang, L. L.; Wang, L. S.; Wang, M.; Wang, P.; Wang, P. L.; Wang, W. P.; Wang, X. F.; Wang, Y.; Wang, Y. D.; Wang, Y. F.; Wang, Y. Q.; Wang, Z.; Wang, Z. G.; Wang, Z. H.; Wang, Z. Y.; Wang, Z. Y.; Weber, T.; Wei, D. H.; Wei, J. H.; Weidenkaff, P.; Wen, S. P.; Wiedner, U.; Wolke, M.; Wu, L. H.; Wu, L. J.; Wu, Z.; Xia, L.; Xia, Y.; Xiao, D.; Xiao, H.; Xiao, Y. J.; Xiao, Z. J.; Xie, Y. G.; Xie, Y. H.; Xiong, X. A.; Xiu, Q. L.; Xu, G. F.; Xu, J. J.; Xu, L.; Xu, Q. J.; Xu, Q. N.; Xu, X. P.; Yan, L.; Yan, W. B.; Yan, W. C.; Yan, Y. H.; Yang, H. J.; Yang, H. X.; Yang, L.; Yang, Y. H.; Yang, Y. X.; Ye, M.; Ye, M. H.; Yin, J. H.; You, Z. Y.; Yu, B. X.; Yu, C. X.; Yu, J. S.; Yuan, C. Z.; Yuan, Y.; Yuncu, A.; Zafar, A. A.; Zeng, Y.; Zeng, Z.; Zhang, B. X.; Zhang, B. Y.; Zhang, C. C.; Zhang, D. H.; Zhang, H. H.; Zhang, H. Y.; Zhang, J.; Zhang, J. L.; Zhang, J. Q.; Zhang, J. W.; Zhang, J. Y.; Zhang, J. Z.; Zhang, K.; Zhang, L.; Zhang, S. Q.; Zhang, X. Y.; Zhang, Y.; Zhang, Y.; Zhang, Y. H.; Zhang, Y. T.; Zhang, Yu; Zhang, Z. H.; Zhang, Z. P.; Zhang, Z. Y.; Zhao, G.; Zhao, J. W.; Zhao, J. Y.; Zhao, J. Z.; Zhao, Lei; Zhao, Ling; Zhao, M. G.; Zhao, Q.; Zhao, S. J.; Zhao, T. C.; Zhao, Y. B.; Zhao, Z. G.; Zhemchugov, A.; Zheng, B.; Zheng, J. P.; Zheng, W. J.; Zheng, Y. H.; Zhong, B.; Zhou, L.; Zhou, X.; Zhou, X. K.; Zhou, X. R.; Zhou, X. Y.; Zhou, Y. X.; Zhu, J.; Zhu, K.; Zhu, K. J.; Zhu, S.; Zhu, S. H.; Zhu, X. L.; Zhu, Y. C.; Zhu, Y. S.; Zhu, Z. A.; Zhuang, J.; Zou, B. S.; Zou, J. H.; Besiii Collaboration

2018-01-01

Based on a sample of 1.31 ×109 J /ψ events collected with the BESIII detector, the matrix elements for the decays η'→η π+π- and η'→η π0π0 are determined using 351,016 η'→(η →γ γ )π+π- and 56,249 η'→(η →γ γ )π0π0 events with background levels less than 1%. Two commonly used representations are used to describe the Dalitz plot density. We find that an assumption of a linear amplitude does not describe the data well. A small deviation of the obtained matrix elements between η'→η π+π- and η'→η π0π0 is probably caused by the mass difference between charged and neutral pions or radiative corrections. No cusp structure in η'→η π0π0 is observed.

Three-body Final State Interaction in η→3π

DOE PAGES

Guo, Peng; Danilkin, Igor V.; Schott, Diane; ...

2015-09-11

We present an unitary dispersive model for themore » $$\\eta \\to 3 \\pi$$ decay process based upon the Khuri-Treiman equations which are solved by means of the Pasquier inversion method. The description of the hadronic final-state interactions for the $$\\eta \\to 3\\pi$$ decay is essential to reproduce the available data and to understand the existing discrepancies between Dalitz plot parameters from experiment and chiral perturbation theory. Our approach incorporates substraction constants that are fixed by fitting the recent high-statistics WASA-at-COSY data for $$\\eta \\to \\pi^+ \\pi^- \\pi^0$$. Based on the parameters obtained we predict the slope parameter for the neutral channel to be $$\\alpha=-0.022\\pm 0.004$$. Through matching to next-to-leading order chiral perturbation theory we estimate the quark mass double ratio to be $$Q=21.4 \\pm 0.4$$.« less

Measurement of the π 0 → e + e - γ Dalitz decay at the Mainz Microtron

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adlarson, P.; Afzal, F.; Aguar-Bartolomé, P.

The Dalitz decay π 0 → e +e -γ has been measured in the γp → π 0p reaction with the A2 tagged-photon facility at the Mainz Microtron, MAMI. The value obtained for the slope parameter of the π 0 electromagnetic transition form factor, a π= 0.030 ± 0.010 tot, is in agreement with existing measurements of this decay and with recent theoretical calculations. The uncertainty obtained in the value of a π is lower than in previous results based on the π 0 → e +e -γ decay.

Measurement of the π 0 → e + e - γ Dalitz decay at the Mainz Microtron

DOE PAGES

Adlarson, P.; Afzal, F.; Aguar-Bartolomé, P.; ...

2017-02-09

The Dalitz decay π 0 → e +e -γ has been measured in the γp → π 0p reaction with the A2 tagged-photon facility at the Mainz Microtron, MAMI. The value obtained for the slope parameter of the π 0 electromagnetic transition form factor, a π= 0.030 ± 0.010 tot, is in agreement with existing measurements of this decay and with recent theoretical calculations. The uncertainty obtained in the value of a π is lower than in previous results based on the π 0 → e +e -γ decay.

Measurement of e+e-→π0π0ψ (3686 ) at √{s } from 4.009 to 4.600 GeV and observation of a neutral charmoniumlike structure

NASA Astrophysics Data System (ADS)

Ablikim, M.; Achasov, M. N.; Ahmed, S.; Albrecht, M.; Amoroso, A.; An, F. F.; An, Q.; Bai, J. Z.; Bakina, O.; Baldini Ferroli, R.; Ban, Y.; Bennett, D. W.; Bennett, J. V.; Berger, N.; Bertani, M.; Bettoni, D.; Bian, J. M.; Bianchi, F.; Boger, E.; Boyko, I.; Briere, R. A.; Cai, H.; Cai, X.; Cakir, O.; Calcaterra, A.; Cao, G. F.; Cetin, S. A.; Chai, J.; Chang, J. F.; Chelkov, G.; Chen, G.; Chen, H. S.; Chen, J. C.; Chen, M. L.; Chen, S. J.; Chen, X. R.; Chen, Y. B.; Chu, X. K.; Cibinetto, G.; Dai, H. L.; Dai, J. P.; Dbeyssi, A.; Dedovich, D.; Deng, Z. Y.; Denig, A.; Denysenko, I.; Destefanis, M.; de Mori, F.; Ding, Y.; Dong, C.; Dong, J.; Dong, L. Y.; Dong, M. Y.; Dorjkhaidav, O.; Dou, Z. L.; Du, S. X.; Duan, P. F.; Fang, J.; Fang, S. S.; Fang, X.; Fang, Y.; Farinelli, R.; Fava, L.; Fegan, S.; Feldbauer, F.; Felici, G.; Feng, C. Q.; Fioravanti, E.; Fritsch, M.; Fu, C. D.; Gao, Q.; Gao, X. L.; Gao, Y.; Gao, Y. G.; Gao, Z.; Garzia, I.; Goetzen, K.; Gong, L.; Gong, W. X.; Gradl, W.; Greco, M.; Gu, M. H.; Gu, S.; Gu, Y. T.; Guo, A. Q.; Guo, L. B.; Guo, R. P.; Guo, Y. P.; Haddadi, Z.; Hafner, A.; Han, S.; Hao, X. Q.; Harris, F. A.; He, K. L.; He, X. Q.; Heinsius, F. H.; Held, T.; Heng, Y. K.; Holtmann, T.; Hou, Z. L.; Hu, C.; Hu, H. M.; Hu, T.; Hu, Y.; Huang, G. S.; Huang, J. S.; Huang, X. T.; Huang, X. Z.; Huang, Z. L.; Hussain, T.; Ikegami Andersson, W.; Ji, Q.; Ji, Q. P.; Ji, X. B.; Ji, X. L.; Jiang, X. S.; Jiang, X. Y.; Jiao, J. B.; Jiao, Z.; Jin, D. P.; Jin, S.; Johansson, T.; Julin, A.; Kalantar-Nayestanaki, N.; Kang, X. L.; Kang, X. S.; Kavatsyuk, M.; Ke, B. C.; Khan, T.; Kiese, P.; Kliemt, R.; Kloss, B.; Koch, L.; Kolcu, O. B.; Kopf, B.; Kornicer, M.; Kuemmel, M.; Kuhlmann, M.; Kupsc, A.; Kühn, W.; Lange, J. S.; Lara, M.; Larin, P.; Lavezzi, L.; Leithoff, H.; Leng, C.; Li, C.; Li, Cheng; Li, D. M.; Li, F.; Li, F. Y.; Li, G.; Li, H. B.; Li, H. J.; Li, J. C.; Li, Jin; Li, K.; Li, K.; Li, Lei; Li, P. L.; Li, P. R.; Li, Q. Y.; Li, T.; Li, W. D.; Li, W. G.; Li, X. L.; Li, X. N.; Li, X. Q.; Li, Z. B.; Liang, H.; Liang, Y. F.; Liang, Y. T.; Liao, G. R.; Lin, D. X.; Liu, B.; Liu, B. J.; Liu, C. X.; Liu, D.; Liu, F. H.; Liu, Fang; Liu, Feng; Liu, H. B.; Liu, H. H.; Liu, H. H.; Liu, H. M.; Liu, J. B.; Liu, J. P.; Liu, J. Y.; Liu, K.; Liu, K. Y.; Liu, Ke; Liu, L. D.; Liu, P. L.; Liu, Q.; Liu, S. B.; Liu, X.; Liu, Y. B.; Liu, Y. Y.; Liu, Z. A.; Liu, Zhiqing; Long, Y. F.; Lou, X. C.; Lu, H. J.; Lu, J. G.; Lu, Y.; Lu, Y. P.; Luo, C. L.; Luo, M. X.; Luo, T.; Luo, X. L.; Lyu, X. R.; Ma, F. C.; Ma, H. L.; Ma, L. L.; Ma, M. M.; Ma, Q. M.; Ma, T.; Ma, X. N.; Ma, X. Y.; Ma, Y. M.; Maas, F. E.; Maggiora, M.; Malik, Q. A.; Mao, Y. J.; Mao, Z. P.; Marcello, S.; Messchendorp, J. G.; Mezzadri, G.; Min, J.; Min, T. J.; Mitchell, R. E.; Mo, X. H.; Mo, Y. J.; Morales Morales, C.; Morello, G.; Muchnoi, N. Yu.; Muramatsu, H.; Musiol, P.; Mustafa, A.; Nefedov, Y.; Nerling, F.; Nikolaev, I. B.; Ning, Z.; Nisar, S.; Niu, S. L.; Niu, X. Y.; Olsen, S. L.; Ouyang, Q.; Pacetti, S.; Pan, Y.; Patteri, P.; Pelizaeus, M.; Pellegrino, J.; Peng, H. P.; Peters, K.; Pettersson, J.; Ping, J. L.; Ping, R. G.; Poling, R.; Prasad, V.; Qi, H. R.; Qi, M.; Qian, S.; Qiao, C. F.; Qin, J. J.; Qin, N.; Qin, X. S.; Qin, Z. H.; Qiu, J. F.; Rashid, K. H.; Redmer, C. F.; Richter, M.; Ripka, M.; Rong, G.; Rosner, Ch.; Ruan, X. D.; Sarantsev, A.; Savrié, M.; Schnier, C.; Schoenning, K.; Shan, W.; Shao, M.; Shen, C. P.; Shen, P. X.; Shen, X. Y.; Sheng, H. Y.; Song, J. J.; Song, X. Y.; Sosio, S.; Sowa, C.; Spataro, S.; Sun, G. X.; Sun, J. F.; Sun, S. S.; Sun, X. H.; Sun, Y. J.; Sun, Y. K.; Sun, Y. Z.; Sun, Z. J.; Sun, Z. T.; Tang, C. J.; Tang, G. Y.; Tang, X.; Tapan, I.; Tiemens, M.; Tsednee, B. T.; Uman, I.; Varner, G. S.; Wang, B.; Wang, B. L.; Wang, D.; Wang, D. Y.; Wang, Dan; Wang, K.; Wang, L. L.; Wang, L. S.; Wang, M.; Wang, P.; Wang, P. L.; Wang, W. P.; Wang, X. F.; Wang, Y. D.; Wang, Y. F.; Wang, Y. Q.; Wang, Z.; Wang, Z. G.; Wang, Z. H.; Wang, Z. Y.; Wang, Z. Y.; Weber, T.; Wei, D. H.; Weidenkaff, P.; Wen, S. P.; Wiedner, U.; Wolke, M.; Wu, L. H.; Wu, L. J.; Wu, Z.; Xia, L.; Xia, Y.; Xiao, D.; Xiao, H.; Xiao, Y. J.; Xiao, Z. J.; Xie, Y. G.; Xie, Y. H.; Xiong, X. A.; Xiu, Q. L.; Xu, G. F.; Xu, J. J.; Xu, L.; Xu, Q. J.; Xu, Q. N.; Xu, X. P.; Yan, L.; Yan, W. B.; Yan, W. C.; Yan, Y. H.; Yang, H. J.; Yang, H. X.; Yang, L.; Yang, Y. H.; Yang, Y. X.; Ye, M.; Ye, M. H.; Yin, J. H.; You, Z. Y.; Yu, B. X.; Yu, C. X.; Yu, J. S.; Yuan, C. Z.; Yuan, Y.; Yuncu, A.; Zafar, A. A.; Zeng, Y.; Zeng, Z.; Zhang, B. X.; Zhang, B. Y.; Zhang, C. C.; Zhang, D. H.; Zhang, H. H.; Zhang, H. Y.; Zhang, J.; Zhang, J. L.; Zhang, J. Q.; Zhang, J. W.; Zhang, J. Y.; Zhang, J. Z.; Zhang, K.; Zhang, L.; Zhang, S. Q.; Zhang, X. Y.; Zhang, Y.; Zhang, Y.; Zhang, Y. H.; Zhang, Y. T.; Zhang, Yu; Zhang, Z. H.; Zhang, Z. P.; Zhang, Z. Y.; Zhao, G.; Zhao, J. W.; Zhao, J. Y.; Zhao, J. Z.; Zhao, Lei; Zhao, Ling; Zhao, M. G.; Zhao, Q.; Zhao, S. J.; Zhao, T. C.; Zhao, Y. B.; Zhao, Z. G.; Zhemchugov, A.; Zheng, B.; Zheng, J. P.; Zheng, W. J.; Zheng, Y. H.; Zhong, B.; Zhou, L.; Zhou, X.; Zhou, X. K.; Zhou, X. R.; Zhou, X. Y.; Zhou, Y. X.; Zhu, K.; Zhu, K. J.; Zhu, S.; Zhu, S. H.; Zhu, X. L.; Zhu, Y. C.; Zhu, Y. S.; Zhu, Z. A.; Zhuang, J.; Zotti, L.; Zou, B. S.; Zou, J. H.; Besiii Collaboration

2018-03-01

Using e+e- collision data collected with the BESIII detector at the BEPCII collider corresponding to an integrated luminosity of 5.2 fb-1 at center-of-mass energies (√{s }) from 4.009 to 4.600 GeV, the process e+e-→π0π0ψ (3686 ) is studied for the first time. The corresponding Born cross sections are measured and found to be half of those of the reaction e+e-→π+π-ψ (3686 ). This is consistent with the expectation from isospin symmetry. Furthermore, the Dalitz plots for π0π0ψ (3686 ) are accordant with those of π+π-ψ (3686 ) at all energy points, and a neutral analog to the structure in π±ψ (3686 ) around 4040 MeV /c2 first observed at √{s }=4.416 GeV is observed in the isospin neutral mode at the same energy.

Neutral D →K K* Decays as Discovery Channels for Charm C P Violation

NASA Astrophysics Data System (ADS)

Nierste, Ulrich; Schacht, Stefan

2017-12-01

We point out that the C P asymmetries in the decays D0→KSK*0 and D0→KSK¯ *0 are potential discovery channels for charm C P violation in the standard model. We stress that no flavor tagging is necessary, the untagged C P asymmetry aCP dir(D (-) →KSK*0) is essentially equal to the tagged one, so that the untagged measurement comes with a significant statistical gain. Depending on the relevant strong phase, |aCP dir ,untag| can be as large as 0.003. The C P asymmetry is dominantly generated by exchange diagrams and does not require nonvanishing penguin amplitudes. While the C P asymmetry is smaller than in the case of D0→KSKS, the experimental analysis is more efficient due to the prompt decay K*0→K+π-. One may further search for favorable strong phases in the Dalitz plot in the vicinity of the K*0 peak.

Measurement of the matrix elements for the decays η ' → η π + π - and η ' → η π 0 π 0

DOE PAGES

Ablikim, M.; Achasov, M. N.; Ahmed, S.; ...

2018-01-10

Based on a sample of 1.31 × 10 9 J/ψ events collected with the BESIII detector, the matrix elements for the decays η' → ηπ +π - and η' → ηπ 0π 0 are determined using 351,016 η' → (η → γγ)π +π - and 56,249 η' → (η → γγ)π 0π 0 events with background levels less than 1%. Two commonly used representations are used to describe the Dalitz plot density. We find that an assumption of a linear amplitude does not describe the data well. A small deviation of the obtained matrix elements between η' → ηπ +πmore » - and η' → ηπ 0π 0 is probably caused by the mass difference between charged and neutral pions or radiative corrections. No cusp structure in η' → ηπ 0π 0 is observed.« less

Measurement of e + e - → π 0 π 0 ψ ( 3686 ) at s from 4.009 to 4.600 GeV and observation of a neutral charmoniumlike structure

DOE PAGES

Ablikim, M.; Achasov, M. N.; Ahmed, S.; ...

2018-03-07

Using e +e - collision data collected with the BESIII detector at the BEPCII collider corresponding to an integrated luminosity of 5.2 fb -1 at center-of-mass energies (ps) from 4.009 to 4.600 GeV, the process e +e - →π 0π 0ψ (3686) is studied for the first time. The corresponding Born cross sections are measured and found to be half of those of the reaction e +e - π +π -ψ (3686). This is consistent with the expectation from isospin symmetry. Furthermore, the Dalitz plots for π 0π 0ψ (3686) are accordant with those of π +π -ψ (3686) at all energy points, and a neutral analogue to the structure in π ±ψ (3686) around 4040 MeV/c 2 first observed atmore » $$\\sqrt{s}$$ = 4.416 GeV is observed in the isospin neutral mode at the same energy.« less

Amplitude analysis of B0→K+π-π0 and evidence of direct CP violation in B→K*π decays

NASA Astrophysics Data System (ADS)

Lees, J. P.; Poireau, V.; Prencipe, E.; Tisserand, V.; Garra Tico, J.; Grauges, E.; Martinelli, M.; Milanes, D. A.; Palano, A.; Pappagallo, M.; Eigen, G.; Stugu, B.; Sun, L.; Brown, D. N.; Kerth, L. T.; Kolomensky, Yu. G.; Lynch, G.; Koch, H.; Schroeder, T.; Asgeirsson, D. J.; Hearty, C.; Mattison, T. S.; McKenna, J. A.; Khan, A.; Blinov, V. E.; Buzykaev, A. R.; Druzhinin, V. P.; Golubev, V. B.; Kravchenko, E. A.; Onuchin, A. P.; Serednyakov, S. I.; Skovpen, Yu. I.; Solodov, E. P.; Todyshev, K. Yu.; Yushkov, A. N.; Bondioli, M.; Curry, S.; Kirkby, D.; Lankford, A. J.; Mandelkern, M.; Stoker, D. P.; Atmacan, H.; Gary, J. W.; Liu, F.; Long, O.; Vitug, G. M.; Campagnari, C.; Hong, T. M.; Kovalskyi, D.; Richman, J. D.; West, C. A.; Eisner, A. M.; Kroseberg, J.; Lockman, W. S.; Martinez, A. J.; Schalk, T.; Schumm, B. A.; Seiden, A.; Cheng, C. H.; Doll, D. A.; Echenard, B.; Flood, K. T.; Hitlin, D. G.; Ongmongkolkul, P.; Porter, F. C.; Rakitin, A. Y.; Andreassen, R.; Dubrovin, M. S.; Meadows, B. T.; Sokoloff, M. D.; Bloom, P. C.; Ford, W. T.; Gaz, A.; Nagel, M.; Nauenberg, U.; Smith, J. G.; Wagner, S. R.; Ayad, R.; Toki, W. H.; Spaan, B.; Kobel, M. J.; Schubert, K. R.; Schwierz, R.; Bernard, D.; Verderi, M.; Clark, P. J.; Playfer, S.; Watson, J. E.; Bettoni, D.; Bozzi, C.; Calabrese, R.; Cibinetto, G.; Fioravanti, E.; Garzia, I.; Luppi, E.; Munerato, M.; Negrini, M.; Piemontese, L.; Baldini-Ferroli, R.; Calcaterra, A.; de Sangro, R.; Finocchiaro, G.; Nicolaci, M.; Pacetti, S.; Patteri, P.; Peruzzi, I. M.; Piccolo, M.; Rama, M.; Zallo, A.; Contri, R.; Guido, E.; Lo Vetere, M.; Monge, M. R.; Passaggio, S.; Patrignani, C.; Robutti, E.; Bhuyan, B.; Prasad, V.; Lee, C. L.; Morii, M.; Edwards, A. J.; Adametz, A.; Marks, J.; Uwer, U.; Bernlochner, F. U.; Ebert, M.; Lacker, H. M.; Lueck, T.; Dauncey, P. D.; Tibbetts, M.; Behera, P. K.; Mallik, U.; Chen, C.; Cochran, J.; Crawley, H. B.; Meyer, W. T.; Prell, S.; Rosenberg, E. I.; Rubin, A. E.; Gritsan, A. V.; Guo, Z. J.; Arnaud, N.; Davier, M.; Derkach, D.; Grosdidier, G.; Le Diberder, F.; Lutz, A. M.; Malaescu, B.; Roudeau, P.; Schune, M. H.; Stocchi, A.; Wormser, G.; Lange, D. J.; Wright, D. M.; Bingham, I.; Chavez, C. A.; Coleman, J. P.; Fry, J. R.; Gabathuler, E.; Hutchcroft, D. E.; Payne, D. J.; Touramanis, C.; Bevan, A. J.; di Lodovico, F.; Sacco, R.; Sigamani, M.; Cowan, G.; Paramesvaran, S.; Brown, D. N.; Davis, C. L.; Denig, A. G.; Fritsch, M.; Gradl, W.; Hafner, A.; Alwyn, K. E.; Bailey, D.; Barlow, R. J.; Jackson, G.; Lafferty, G. D.; Cenci, R.; Hamilton, B.; Jawahery, A.; Roberts, D. A.; Simi, G.; Dallapiccola, C.; Salvati, E.; Cowan, R.; Dujmic, D.; Sciolla, G.; Lindemann, D.; Patel, P. M.; Robertson, S. H.; Schram, M.; Biassoni, P.; Lazzaro, A.; Lombardo, V.; Palombo, F.; Stracka, S.; Cremaldi, L.; Godang, R.; Kroeger, R.; Sonnek, P.; Summers, D. J.; Nguyen, X.; Taras, P.; de Nardo, G.; Monorchio, D.; Onorato, G.; Sciacca, C.; Raven, G.; Snoek, H. L.; Jessop, C. P.; Knoepfel, K. J.; Losecco, J. M.; Wang, W. F.; Honscheid, K.; Kass, R.; Brau, J.; Frey, R.; Sinev, N. B.; Strom, D.; Torrence, E.; Feltresi, E.; Gagliardi, N.; Margoni, M.; Morandin, M.; Posocco, M.; Rotondo, M.; Simonetto, F.; Stroili, R.; Ben-Haim, E.; Bomben, M.; Bonneaud, G. R.; Briand, H.; Calderini, G.; Chauveau, J.; Hamon, O.; Leruste, Ph.; Marchiori, G.; Ocariz, J.; Sitt, S.; Biasini, M.; Manoni, E.; Rossi, A.; Angelini, C.; Batignani, G.; Bettarini, S.; Carpinelli, M.; Casarosa, G.; Cervelli, A.; Forti, F.; Giorgi, M. A.; Lusiani, A.; Neri, N.; Oberhof, B.; Paoloni, E.; Perez, A.; Rizzo, G.; Walsh, J. J.; Lopes Pegna, D.; Lu, C.; Olsen, J.; Smith, A. J. S.; Telnov, A. V.; Anulli, F.; Cavoto, G.; Faccini, R.; Ferrarotto, F.; Ferroni, F.; Gaspero, M.; Li Gioi, L.; Mazzoni, M. A.; Piredda, G.; Bünger, C.; Hartmann, T.; Leddig, T.; Schröder, H.; Waldi, R.; Adye, T.; Olaiya, E. O.; Wilson, F. F.; Emery, S.; Hamel de Monchenault, G.; Vasseur, G.; Yèche, Ch.; Aston, D.; Bard, D. J.; Bartoldus, R.; Benitez, J. F.; Cartaro, C.; Convery, M. R.; Dorfan, J.; Dubois-Felsmann, G. P.; Dunwoodie, W.; Field, R. C.; Franco Sevilla, M.; Fulsom, B. G.; Gabareen, A. M.; Graham, M. T.; Grenier, P.; Hast, C.; Innes, W. R.; Kelsey, M. H.; Kim, H.; Kim, P.; Kocian, M. L.; Leith, D. W. G. S.; Lewis, P.; Li, S.; Lindquist, B.; Luitz, S.; Luth, V.; Lynch, H. L.; Macfarlane, D. B.; Muller, D. R.; Neal, H.; Nelson, S.; Ofte, I.; Perl, M.; Pulliam, T.; Ratcliff, B. N.; Roodman, A.; Salnikov, A. A.; Santoro, V.; Schindler, R. H.; Snyder, A.; Su, D.; Sullivan, M. K.; Va'Vra, J.; Wagner, A. P.; Weaver, M.; Wisniewski, W. J.; Wittgen, M.; Wright, D. H.; Wulsin, H. W.; Yarritu, A. K.; Young, C. C.; Ziegler, V.; Park, W.; Purohit, M. V.; White, R. M.; Wilson, J. R.; Randle-Conde, A.; Sekula, S. J.; Bellis, M.; Burchat, P. R.; Miyashita, T. S.; Alam, M. S.; Ernst, J. A.; Gorodeisky, R.; Guttman, N.; Peimer, D. R.; Soffer, A.; Lund, P.; Spanier, S. M.; Eckmann, R.; Ritchie, J. L.; Ruland, A. M.; Schilling, C. J.; Schwitters, R. F.; Wray, B. C.; Izen, J. M.; Lou, X. C.; Bianchi, F.; Gamba, D.; Lanceri, L.; Vitale, L.; Lopez-March, N.; Martinez-Vidal, F.; Oyanguren, A.; Ahmed, H.; Albert, J.; Banerjee, Sw.; Choi, H. H. F.; King, G. J.; Kowalewski, R.; Lewczuk, M. J.; Lindsay, C.; Nugent, I. M.; Roney, J. M.; Sobie, R. J.; Gershon, T. J.; Harrison, P. F.; Latham, T. E.; Puccio, E. M. T.; Band, H. R.; Dasu, S.; Pan, Y.; Prepost, R.; Vuosalo, C. O.; Wu, S. L.

2011-06-01

We analyze the decay B0→K+π-π0 with a sample of 4.54×108 BB¯ events collected by the BABAR detector at the PEP-II asymmetric-energy B factory at SLAC, and extract the complex amplitudes of seven interfering resonances over the Dalitz plot. These results are combined with amplitudes measured in B0→KS0π+π- decays to construct isospin amplitudes from B0→K*π and B0→ρK decays. We measure the phase of the isospin amplitude Φ3/2, useful in constraining the Cabibbo-Kobayashi-Maskawa unitarity triangle angle γ and evaluate a CP rate asymmetry sum rule sensitive to the presence of new physics operators. We measure direct CP violation in B0→K*+π- decays at the level of 3σ when measurements from both B0→K+π-π0 and B0→KS0π+π- decays are combined.

Invariant mass reconstruction of the η meson in the decay channel π + π - π 0 with the REDTOP experiment

NASA Astrophysics Data System (ADS)

Escobar Martínez, S. D.; Fabela Enríquez, B.; Pedraza Morales, M. I.; REDTOP Collaboration

2017-10-01

REDTOP is a novel experiment proposed at the Delivery Ring of Fermilab with the intent of producing more than 1013 η mesons per year to detect possible rare η decays which can be a clear evidence of the existence of Physics Beyond the Standard Model. Such statistics are sufficient for investigating several discrete symmetry violations, searching for new particles and interactions and to perform precision studies. One of the golden processes to study is the η → π + π - π 0 decay [7], where π 0 decays promptly into two photons. In the context of the Standard Model, the dynamics of the charged pions is symmetric in this process. Thus, any mirror asymmetry in the Dalitz plot would be a direct indication of C and CP violation. We present a study on the performance of the REDTOP experiment detector by reconstructing the invariant mass of the final state π + π - γγ using Monte Carlo samples.

Measurement of e + e - → π 0 π 0 ψ ( 3686 ) at s from 4.009 to 4.600 GeV and observation of a neutral charmoniumlike structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ablikim, M.; Achasov, M. N.; Ahmed, S.

Using e +e - collision data collected with the BESIII detector at the BEPCII collider corresponding to an integrated luminosity of 5.2 fb -1 at center-of-mass energies (ps) from 4.009 to 4.600 GeV, the process e +e - →π 0π 0ψ (3686) is studied for the first time. The corresponding Born cross sections are measured and found to be half of those of the reaction e +e - π +π -ψ (3686). This is consistent with the expectation from isospin symmetry. Furthermore, the Dalitz plots for π 0π 0ψ (3686) are accordant with those of π +π -ψ (3686) at all energy points, and a neutral analogue to the structure in π ±ψ (3686) around 4040 MeV/c 2 first observed atmore » $$\\sqrt{s}$$ = 4.416 GeV is observed in the isospin neutral mode at the same energy.« less

Neutral D→KK^{*} Decays as Discovery Channels for Charm CP Violation.

PubMed

Nierste, Ulrich; Schacht, Stefan

2017-12-22

We point out that the CP asymmetries in the decays D^{0}→K_{S}K^{*0} and D^{0}→K_{S}K[over ¯]^{*0} are potential discovery channels for charm CP violation in the standard model. We stress that no flavor tagging is necessary, the untagged CP asymmetry a_{CP}^{dir}(D[over (-)]→K_{S}K^{*0}) is essentially equal to the tagged one, so that the untagged measurement comes with a significant statistical gain. Depending on the relevant strong phase, |a_{CP}^{dir,untag}| can be as large as 0.003. The CP asymmetry is dominantly generated by exchange diagrams and does not require nonvanishing penguin amplitudes. While the CP asymmetry is smaller than in the case of D^{0}→K_{S}K_{S}, the experimental analysis is more efficient due to the prompt decay K^{*0}→K^{+}π^{-}. One may further search for favorable strong phases in the Dalitz plot in the vicinity of the K^{*0} peak.

Dynamics of C2H 2 3 +→H++H++C 2 + investigated by 50-keV/u Ne8 + impact

NASA Astrophysics Data System (ADS)

Xu, S.; Zhu, X. L.; Feng, W. T.; Guo, D. L.; Zhao, Q.; Yan, S.; Zhang, P.; Zhao, D. M.; Gao, Y.; Zhang, S. F.; Yang, J.; Ma, X.

2018-06-01

Breakup dynamics of C2H 2 3 + → H++H++C 2 + induced by 50-keV/u Ne8 + ion impact is investigated employing a reaction microscope. All three ionic fragments in the final state are detected in coincidence, and their momentum vectors as well as the kinetic energies are determined. The kinetic-energy correlation spectrum of the two protons displays very rich structures. Utilizing the Newton diagrams and the Dalitz plots, different dissociation mechanisms corresponding to these structures are identified. It was found that, besides the concerted and sequential breakup, fragmentation mechanisms associated with different vibration modes including molecular bending and asymmetric stretching also make significant contributions. We analyzed the correlation between different fragmentation mechanisms and the kinetic-energy release (KER) and found that the sequential process occurs with higher KER while, in contrast, the concerted process mainly contributes to the lower KER. This behavior is entirely opposite to the breakup of the CO2 molecule.

Workshop on Pion-Kaon Interactions (PKI2018) Mini-Proceedings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amaryan, M; Pal, Bilas

This volume is a short summary of talks given at the PKI2018 Workshop organized to discuss current status and future prospects of pi -K interactions. The precise data on pi K interaction will have a strong impact on strange meson spectroscopy and form factors that are important ingredients in the Dalitz plot analysis of a decays of heavy mesons as well as precision measurement of Vus matrix element and therefore on a test of unitarity in the first raw of the CKM matrix. The workshop has combined the efforts of experimentalists, Lattice QCD, and phenomenology communities. Experimental data relevant tomore » the topic of the workshop were presented from the broad range of different collaborations like CLAS, GlueX, COMPASS, BaBar, BELLE, BESIII, VEPP-2000, and LHCb. One of the main goals of this workshop was to outline a need for a new high intensity and high precision secondary KL beam facility at JLab produced with the 12 GeV electron beam of CEBAF accelerator.« less

First observation and Dalitz analysis of the D0-->K(0)Setapi(0) decay.

PubMed

Rubin, P; Eisenstein, B I; Gollin, G D; Karliner, I; Lowrey, N; Naik, P; Sedlack, C; Selen, M; Thaler, J J; Williams, J; Edwards, K W; Besson, D; Gao, K Y; Gong, D T; Kubota, Y; Li, S Z; Poling, R; Scott, A W; Smith, A; Stepaniak, C J; Urheim, J; Metreveli, Z; Seth, K K; Tomaradze, A; Zweber, P; Ernst, J; Arms, K; Eckhart, E; Gan, K K; Severini, H; Skubic, P; Asner, D M; Dytman, S A; Mehrabyan, S; Mueller, J A; Savinov, V; Li, Z; Lopez, A; Mendez, H; Ramirez, J; Huang, G S; Miller, D H; Pavlunin, V; Sanghi, B; Shibata, E I; Shipsey, I P J; Adams, G S; Chasse, M; Cummings, J P; Danko, I; Napolitano, J; Cronin-Hennessy, D; Park, C S; Park, W; Thayer, J B; Thorndike, E H; Coan, T E; Gao, Y S; Liu, F; Stroynowski, R; Artuso, M; Boulahouache, C; Blusk, S; Butt, J; Dambasuren, E; Dorjkhaidav, O; Menaa, N; Mountain, R; Muramatsu, H; Nandakumar, R; Redjimi, R; Sia, R; Skwarnicki, T; Stone, S; Wang, J C; Zhang, K; Mahmood, A H; Csorna, S E; Bonvicini, G; Cinabro, D; Dubrovin, M; Bornheim, A; Lipeles, E; Pappas, S P; Weinstein, A J; Briere, R A; Chen, G P; Ferguson, T; Tatishvili, G; Vogel, H; Watkins, M E; Adam, N E; Alexander, J P; Berkelman, K; Cassel, D G; Duboscq, J E; Ecklund, K M; Ehrlich, R; Fields, L; Galik, R S; Gibbons, L; Gittelman, B; Gray, R; Gray, S W; Hartill, D L; Heltsley, B K; Hertz, D; Hsu, L; Jones, C D; Kandaswamy, J; Kreinick, D L; Kuznetsov, V E; Mahlke-Krüger, H; Meyer, T O; Onyisi, P U E; Patterson, J R; Pedlar, T K; Peterson, D; Pivarski, J; Riley, D; Rosner, J L; Ryd, A; Sadoff, A J; Schwarthoff, H; Shepherd, M R; Sun, W M; Thayer, J G; Urner, D; Wilksen, T; Weinberger, M; Athar, S B; Avery, P; Breva-Newell, L; Patel, R; Potlia, V; Stoeck, H; Yelton, J

2004-09-10

Using 9.0 fb(-1) of integrated luminosity in e(+)e(-) collisions near the Upsilon(4S) mass collected with the CLEO II.V detector we report the first observation of the decay D0-->K(0)(S)etapi(0). We measure the ratio of branching fractions, BR(D0-->K(0)(S)etapi(0))BR / (D0-->K(0)(S)pi(0))=0.46+/-0.07+/-0.06. We perform a Dalitz analysis of 155 selected D0-->K(0)(S)etapi(0) candidates and find leading contributions from a(0)(980)K(0)(S) and K(*)(892)eta intermediate states.

Parametrizations of three-body hadronic B - and D -decay amplitudes in terms of analytic and unitary meson-meson form factors

NASA Astrophysics Data System (ADS)

Boito, D.; Dedonder, J.-P.; El-Bennich, B.; Escribano, R.; Kamiński, R.; Leśniak, L.; Loiseau, B.

2017-12-01

We introduce parametrizations of hadronic three-body B and D weak decay amplitudes that can be readily implemented in experimental analyses and are a sound alternative to the simplistic and widely used sum of Breit-Wigner type amplitudes, also known as the isobar model. These parametrizations can be particularly useful in the interpretation of C P asymmetries in the Dalitz plots. They are derived from previous calculations based on a quasi-two-body factorization approach in which two-body hadronic final-state interactions are fully taken into account in terms of unitary S - and P -wave π π , π K , and K K ¯ form factors. These form factors can be determined rigorously, fulfilling fundamental properties of quantum field-theory amplitudes such as analyticity and unitarity, and are in agreement with the low-energy behavior predicted by effective theories of QCD. They are derived from sets of coupled-channel equations using T -matrix elements constrained by experimental meson-meson phase shifts and inelasticities, chiral symmetry, and asymptotic QCD. We provide explicit amplitude expressions for the decays B±→π+π-π±, B →K π+π-, B±→K+K-K±, D+→π-π+π+, D+→K-π+π+, and D0→KS0π+π-, for which we have shown in previous studies that this approach is phenomenologically successful; in addition, we provide expressions for the D0→KS0K+K- decay. Other three-body hadronic channels can be parametrized likewise.

Measurement of the Cabibbo-Kobayashi-Maskawa Angle {gamma} in B{sup {+-}}{yields}D{sup (*)}K{sup {+-}} Decays with a Dalitz Analysis of D{yields}K{sub S}{sup 0}{pi}{sup -}{pi}{sup +}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aubert, B.; Barate, R.; Boutigny, D.

2005-09-16

We report on a measurement of the Cabibbo-Kobayashi-Maskawa CP-violating phase {gamma} through a Dalitz analysis of neutral D decays to K{sub S}{sup 0}{pi}{sup -}{pi}{sup +} in the processes B{sup {+-}}{yields}D{sup (*)}K{sup {+-}}, D*{yields}D{pi}{sup 0}, D{gamma}. Using a sample of 227x10{sup 6} BB pairs collected by the BABAR detector, we measure the amplitude ratios r{sub B}=0.12{+-}0.08{+-}0.03{+-}0.04 and r{sub B}*=0.17{+-}0.10{+-}0.03{+-}0.03, the relative strong phases {delta}{sub B}=(104{+-}45{sub -21-24}{sup +17+16}) deg. and {delta}{sub B}*=(-64{+-}41{sub -12}{sup +14}{+-}15) deg. between the amplitudes A(B{sup -}{yields}D{sup (*)0}K{sup -}) and A(B{sup -}{yields}D{sup (*)0}K{sup -}), and {gamma}=(70{+-}31{sub -10-11}{sup +12+14}) deg. The first error is statistical, the second is the experimentalmore » systematic uncertainty, and the third reflects the Dalitz model uncertainty. The results for the strong and weak phases have a twofold ambiguity.« less

High-statistics study of the reaction γp → p2π0

NASA Astrophysics Data System (ADS)

Sokhoyan, V.; Gutz, E.; Crede, V.; van Pee, H.; Anisovich, A. V.; Bacelar, J. C. S.; Bantes, B.; Bartholomy, O.; Bayadilov, D.; Beck, R.; Beloglazov, Y. A.; Castelijns, R.; Dutz, H.; Elsner, D.; Ewald, R.; Frommberger, F.; Fuchs, M.; Funke, Ch.; Gregor, R.; Gridnev, A. B.; Hillert, W.; Hoffmeister, Ph.; Horn, I.; Jaegle, I.; Junkersfeld, J.; Kalinowsky, H.; Kammer, S.; Kleber, V.; Klein, Frank; Klein, Friedrich; Klempt, E.; Kotulla, M.; Krusche, B.; Lang, M.; Löhner, H.; Lopatin, I. V.; Lugert, S.; Mertens, T.; Messchendorp, J. G.; Metag, V.; Metsch, B.; Nanova, M.; Nikonov, V. A.; Novinsky, D.; Novotny, R.; Ostrick, M.; Pant, L.; Pfeiffer, M.; Piontek, D.; Roy, A.; Sarantsev, A. V.; Schmidt, Ch.; Schmieden, H.; Seifen, T.; Shende, S.; Süle, A.; Sumachev, V. V.; Szczepanek, T.; Thiel, A.; Thoma, U.; Trnka, D.; Varma, R.; Walther, D.; Wendel, Ch.; Wilson, A.

2015-08-01

The photoproduction of 2 π 0 mesons off protons was studied with the Crystal Barrel/TAPS experiment at the electron accelerator ELSA in Bonn. The energy of photons produced in a radiator was tagged in the energy range from 600 MeV to 2.5 GeV. Differential and total cross sections and pπ 0 π 0 Dalitz plots are presented. Part of the data was taken with a diamond radiator producing linearly polarized photons, and beam asymmetries were derived. Properties of nucleon and Δ resonances contributing to the pπ 0 π 0 final state were determined within the Bonn-Gatchina (BnGa) partial-wave analysis. The data presented here allow us to determine branching ratios of nucleon and Δ resonances for their decays into pπ 0 π 0 via several intermediate states. Most prominent are decays proceeding via Δ(1232) π, N(1440)1/2+ π, N(1520)3/2- π, N(1680)5/2+ π, but also pf 0(500), pf 0(980), and pf 2(1270) contribute to the reaction.

Evidence for Direct CP Violation in the Measurement of the Cabbibo-Kobayashi-Maskawa Angle {gamma} with B{sup {+-}}{yields}D(*)K{sup (*){+-}} Decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amo Sanchez, P. del; Lees, J. P.; Poireau, V.

2010-09-17

We report the measurement of the Cabibbo-Kobayashi-Maskawa CP-violating angle {gamma} through a Dalitz plot analysis of neutral D-meson decays to K{sub S}{sup 0}{pi}{sup +}{pi}{sup -} and K{sub S}{sup 0}K{sup +}K{sup -} produced in the processes B{sup {+-}}{yields}DK{sup {+-}}, B{sup {+-}}{yields}D*K{sup {+-}} with D*{yields}D{pi}{sup 0}, D{gamma}, and B{sup {+-}}{yields}DK*{sup {+-}} with K*{sup {+-}}{yields}K{sub S}{sup 0}{pi}{+-}, using 468 million BB pairs collected by the BABAR detector at the PEP-II asymmetric-energy e{sup +}e{sup -} collider at SLAC. We measure {gamma}=(68{+-}14{+-}4{+-}3) deg. (modulo 180 deg.), where the first error is statistical, the second is the experimental systematic uncertainty, and the third reflects the uncertaintymore » in the description of the neutral D decay amplitudes. This result is inconsistent with {gamma}=0 (no direct CP violation) with a significance of 3.5 standard deviations.« less

Evidence for Direct CP Violation in the Measurement of the Cabibbo-Kobayashi-Maskawa Angle gamma with B-+ to D(*) K(*)-+ Decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

del Amo Sanchez, P.; Lees, J.P.; Poireau, V.

2011-08-19

We report the measurement of the Cabibbo-Kobayashi-Maskawa CP-violating angle {gamma} through a Dalitz plot analysis of neutral D meson decays to K{sub S}{sup 0}{pi}{sup +}{pi}{sup -} and K{sub S}{sup 0} K{sup +}K{sup -} produced in the processes B{sup {-+}} {yields} DK{sup {-+}}, B{sup {-+}} {yields} D* K{sup {-+}} with D* {yields} D{pi}{sup 0}, D{gamma}, and B{sup {-+}} {yields} DK*{sup {-+}} with K*{sup {-+}} {yields} K{sub S}{sup 0}{pi}{sup {-+}}, using 468 million B{bar B} pairs collected by the BABAR detector at the PEP-II asymmetric-energy e{sup +}e{sup -} collider at SLAC. We measure {gamma} = (68 {+-} 14 {+-} 4 {+-} 3){supmore » o} (modulo 180{sup o}), where the first error is statistical, the second is the experimental systematic uncertainty and the third reflects the uncertainty in the description of the neutral D decay amplitudes. This result is inconsistent with {gamma} = 0 (no direct CP violation) with a significance of 3.5 standard deviations.« less

Discrete contribution to {psi}{sup '}{yields}J/{psi}+{gamma}{gamma}

DOE Office of Scientific and Technical Information (OSTI.GOV)

He Zhiguo; Soto, Joan; Lu Xiaorui

2011-03-01

The decay mode {psi}(2S){yields}J/{psi}+{gamma}{gamma} is proposed in order to experimentally identify the effects of the coupling of charmonium states to the continuum D{bar D} states. To have a better understanding of such a two-photon decay process, in this work we restrict ourselves to investigate the contribution of the discrete part, in which the photons are mainly produced via the intermediate states {chi}{sub cJ}(nP). Besides calculating the resonance contributions of {chi}{sub cJ}(1P)(J=0,1,2), we also take into account the contributions of the higher excited states {chi}{sub cJ}(2P) and the interference effect among the 1P and 2P states. We find that the contributionmore » of the 2P states and the interference terms to the total decay width is very tiny. However, for specific regions of the Dalitz plot, off the resonance peaks, we find that these contributions are sizable and should also be accounted for. We also provide the photon spectrum and study the polarization of J/{psi}.« less

Study of dipion transitions among Υ(3S), Υ(2S), and Υ(1S) states

NASA Astrophysics Data System (ADS)

Cronin-Hennessy, D.; Gao, K. Y.; Hietala, J.; Kubota, Y.; Klein, T.; Lang, B. W.; Poling, R.; Scott, A. W.; Smith, A.; Zweber, P.; Dobbs, S.; Metreveli, Z.; Seth, K. K.; Tomaradze, A.; Ernst, J.; Ecklund, K. M.; Severini, H.; Love, W.; Savinov, V.; Lopez, A.; Mehrabyan, S.; Mendez, H.; Ramirez, J.; Huang, G. S.; Miller, D. H.; Pavlunin, V.; Sanghi, B.; Shipsey, I. P. J.; Xin, B.; Adams, G. S.; Anderson, M.; Cummings, J. P.; Danko, I.; Hu, D.; Moziak, B.; Napolitano, J.; He, Q.; Insler, J.; Muramatsu, H.; Park, C. S.; Thorndike, E. H.; Yang, F.; Artuso, M.; Blusk, S.; Khalil, S.; Li, J.; Menaa, N.; Mountain, R.; Nisar, S.; Randrianarivony, K.; Sia, R.; Skwarnicki, T.; Stone, S.; Wang, J. C.; Bonvicini, G.; Cinabro, D.; Dubrovin, M.; Lincoln, A.; Pappas, S. P.; Weinstein, A. J.; Asner, D. M.; Edwards, K. W.; Naik, P.; Briere, R. A.; Ferguson, T.; Tatishvili, G.; Vogel, H.; Watkins, M. E.; Rosner, J. L.; Adam, N. E.; Alexander, J. P.; Cassel, D. G.; Duboscq, J. E.; Ehrlich, R.; Fields, L.; Galik, R. S.; Gibbons, L.; Gray, R.; Gray, S. W.; Hartill, D. L.; Heltsley, B. K.; Hertz, D.; Jones, C. D.; Kandaswamy, J.; Kreinick, D. L.; Kuznetsov, V. E.; Mahlke-Krüger, H.; Mohapatra, D.; Onyisi, P. U. E.; Patterson, J. R.; Peterson, D.; Pivarski, J.; Riley, D.; Ryd, A.; Sadoff, A. J.; Schwarthoff, H.; Shi, X.; Stroiney, S.; Sun, W. M.; Wilksen, T.; Athar, S. B.; Patel, R.; Yelton, J.; Rubin, P.; Cawlfield, C.; Eisenstein, B. I.; Karliner, I.; Kim, D.; Lowrey, N.; Selen, M.; White, E. J.; Wiss, J.; Mitchell, R. E.; Shepherd, M. R.; Besson, D.; Pedlar, T. K.

2007-10-01

We present measurements of decay matrix elements for hadronic transitions of the form Υ(nS)→Υ(mS)ππ, where (n,m)=(3,1),(2,1),(3,2). We reconstruct charged and neutral pion modes with the final state Upsilon decaying to either μ+μ- or e+e-. Dalitz plot distributions for the 12 decay modes are fit individually as well as jointly assuming isospin symmetry, thereby measuring the matrix elements of the decay amplitude. We observe and account for the anomaly previously noted in the dipion invariant mass distribution for the Υ(3S)→Υ(1S)ππ transition and obtain good descriptions of the dynamics of the decay using the most general decay amplitude allowed by partial conservation of the axial-vector current considerations. The fits further indicate that the Υ(2S)→Υ(1S)ππ and Υ(3S)→Υ(2S)ππ transitions also show the presence of terms in the decay amplitude that were previously ignored, although at a relatively suppressed level.

Amplitude Analysis of B0 to K^ pi^-pi^0 and Evidence of Direct CP Violation in B to K^* pi decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lees, J.P.

We analyze the decay B{sup 0} {yields} K{sup +} {pi}{sup -} {pi}{sup 0} with a sample of 454 million B{bar B} events collected by the BABAR detector at the PEP-II asymmetric-energy B factory at SLAC, and extract the complex amplitudes of seven interfering resonances over the Dalitz plot. These results are combined with amplitudes measured in B{sup 0} {yields} K{sup 0}{sub s}{pi}{sup +}{pi}{sup -} decays to construct isospin amplitudes from B{sup 0} {yields} K{sup *}{pi} and B{sup 0} {yields} {rho}K decays. We measure the phase of the isospin amplitude {Phi}{sub 3/2}, useful in constraining the CKM unitarity triangle angle {gamma}more » and evaluate a CP rate asymmetry sum rule sensitive to the presence of new physics operators. We measure direct CP violation in B{sup 0} {yields} K{sup *+}{pi}{sup -} decays at the level of 3 {sigma} when measurements from both B{sup 0} {yields} K{sup +}{pi}{sup -}{pi}{sup 0} and B{sup 0} {yields} K{sup 0}{sub s}{pi}{sup +}{pi}{sup -} decays are combined.« less

Closing in on the radiative weak chiral couplings

NASA Astrophysics Data System (ADS)

Cappiello, Luigi; Catà, Oscar; D'Ambrosio, Giancarlo

2018-03-01

We point out that, given the current experimental status of radiative kaon decays, a subclass of the O (p^4) counterterms of the weak chiral lagrangian can be determined in closed form. This involves in a decisive way the decay K^± → π ^± π ^0 l^+ l^-, currently being measured at CERN by the NA48/2 and NA62 collaborations. We show that consistency with other radiative kaon decay measurements leads to a rather clean prediction for the {O}(p^4) weak couplings entering this decay mode. This results in a characteristic pattern for the interference Dalitz plot, susceptible to be tested already with the limited statistics available at NA48/2. We also provide the first analysis of K_S→ π ^+π ^-γ ^*, which will be measured by LHCb and will help reduce (together with the related K_L decay) the experimental uncertainty on the radiative weak chiral couplings. A precise experimental determination of the {O}(p^4) weak couplings is important in order to assess the validity of the existing theoretical models in a conclusive way. We briefly comment on the current theoretical situation and discuss the merits of the different theoretical approaches.

ResidPlots-2: Computer Software for IRT Graphical Residual Analyses

ERIC Educational Resources Information Center

Liang, Tie; Han, Kyung T.; Hambleton, Ronald K.

2009-01-01

This article discusses the ResidPlots-2, a computer software that provides a powerful tool for IRT graphical residual analyses. ResidPlots-2 consists of two components: a component for computing residual statistics and another component for communicating with users and for plotting the residual graphs. The features of the ResidPlots-2 software are…

Charm Penguin in B± → K±K+K-: Partonic and hadronic loops

NASA Astrophysics Data System (ADS)

Bediaga, I.; Frederico, T.; Magalhães, P. C.

2018-05-01

Charm penguin diagrams are known to be the main contribution to charmless B decay process with strangeness variation equal to minus one, which is the case of B± →K±K+K- decay. The large phase space available in this and other B three-body decays allows non trivial final state interactions with all sort of rescattering processes and also access high momentum transfers in the central region of the Dalitz plane. In this work we investigate the charm Penguin contribution to B± →K±K+K-, described by a hadronic triangle loop in nonperturbative regions of the phase space, and by a partonic loop at the quasi perturbative region. These nonresonant amplitudes should have a particular structure in the Dalitz plane and their contributions to the final decay amplitude can be confirmed by a data amplitude analysis in this channel. In particular, the hadronic amplitude has a changing sign in the phase at D D bar threshold which can result in a change of sign for the CP asymmetry.

Amplitude analysis of B - → D + π - π - decays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aaij, R.; Adeva, B.; Adinolfi, M.

The Dalitz plot analysis technique is used to study the resonant substructures of B - → D + π - π - decays in a data sample corresponding to 3.0 fb -1 of pp collision data recorded by the LHCb experiment during 2011 and 2012. A model-independent analysis of the angular moments demonstrates the presence of resonances with spins 1, 2 and 3 at high D + π - mass. The data are fitted with an amplitude model composed of a quasi-model-independent function to describe the D + π - S wave together with virtual contributions from the D*(2007) 0 and B* 0 states, and components corresponding to the Dmore » $$*\\atop{2}$$(2460) 0, D$$*\\atop{1}$$(2680) 0 , D$$*\\atop{3}$$(2760) 0 and D$$*\\atop{2}$$(3000) 0 resonances. The masses and widths of these resonances are determined together with the branching fractions for their production in B- → D +π - π - decays. The D + π - S wave has phase motion consistent with that expected due to the presence of the D$$*\\atop{0}$$(2400) 0 state. These results constitute the first observations of the D$$*\\atop{3}$$(2760) 0 and D$$*\\atop{2}$$(3000) 0 resonances, with significances of 10σ and 6.6σ, respectively.« less

Amplitude analysis of B - → D + π - π - decays

DOE PAGES

Aaij, R.; Adeva, B.; Adinolfi, M.; ...

2016-10-05

The Dalitz plot analysis technique is used to study the resonant substructures of B - → D + π - π - decays in a data sample corresponding to 3.0 fb -1 of pp collision data recorded by the LHCb experiment during 2011 and 2012. A model-independent analysis of the angular moments demonstrates the presence of resonances with spins 1, 2 and 3 at high D + π - mass. The data are fitted with an amplitude model composed of a quasi-model-independent function to describe the D + π - S wave together with virtual contributions from the D*(2007) 0 and B* 0 states, and components corresponding to the Dmore » $$*\\atop{2}$$(2460) 0, D$$*\\atop{1}$$(2680) 0 , D$$*\\atop{3}$$(2760) 0 and D$$*\\atop{2}$$(3000) 0 resonances. The masses and widths of these resonances are determined together with the branching fractions for their production in B- → D +π - π - decays. The D + π - S wave has phase motion consistent with that expected due to the presence of the D$$*\\atop{0}$$(2400) 0 state. These results constitute the first observations of the D$$*\\atop{3}$$(2760) 0 and D$$*\\atop{2}$$(3000) 0 resonances, with significances of 10σ and 6.6σ, respectively.« less

Quarks, gluons, and color are sufficient, but are they necessary II

NASA Astrophysics Data System (ADS)

Bartlett, David

2017-01-01

The 25th anniversary of the death of John Stewart Bell, was marked by lively discussion in Physics Today. This activity spurred me to consider the quark as one of Bell's ugly ``hidden variables'' which can be discarded. Here I extend comments on topics that are usually thought to be settled. These include CP-violation in KLong decay and ``quantum spookiness'' in B-decays. Apparently, the simple reaction e+ e- goes to ``anything + anything bar'' misses essential hadronic physics. The psi was indeed discovered by observing a sharp peak in the total cross section for e+e- at SLAC, but the J was found in the fragments from pp collisions at Brookhaven. Similarly, the parity of the D-meson was determined in a particle reconstruction by an LBL-SLAC group. They analyzed the Dalitz plot of the K pi pi in fragments at SPEAR and found ``Evidence for Parity Nonconservation in the Decays of the Narrow states near 1.87 GeV/c2. The authors did not mention quarks at all. Finally, the parity of the B-meson may be relevant to the exotic ``charmonium'' states observed in fragments at the B-factories. Unfortunately, the parity of the B cannot currently be determined independently of the quark model[PDG-2014, B+/-,top page 51].

An overview of η and η‧ decays at BESIII

NASA Astrophysics Data System (ADS)

Fang, Shuang-shi; Kupsc, Andrzej; Wei, Dai-hui

2018-04-01

The world’s largest sample of J/ψ events, 1.31 billion events accumulated at the BESIII detector, provides a unique opportunity to investigate η and η‧ physics via two-body J/ψ radiative or hadronic decays. For many η‧ decay channels the low background data samples are up to three orders of magnitude larger than collected in any previous experiment. Here we review the most significant results on η and η‧ obtained at BESIII so far. The analyses range from detailed studies of common decay dynamics, observations of new radiative and Dalitz decays, and searches for rare/forbidden decays with sensitivity up to ℬ ∼ 10‑5. Finally, prospects of forthcoming runs at the J/ψ peak for η and η‧ physics are discussed. Supported by National Natural Science Foundation of China (NSFC) (11565006, 11675184, 11735014)

Measurement of the transition form factor of {eta} meson with WASA-at-COSY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhatt, H.

2011-10-24

Reaction {eta}{yields}e{sup +}e{sup -}{gamma} is used to investigate the transition form factor of {eta} meson with WASA detector at COSY. Where the {eta} meson is produced in pp collision at 1.4 GeV. We present the analysis techniques and preliminary results of {eta} Dalitz decays.

Electromagnetic Transition Form Factor of the η meson with WASA-at-COSY

NASA Astrophysics Data System (ADS)

Goswami, A.

2016-11-01

In this work we present a study of the Dalitz decay η → γe+e-. The aim of this work is to measure the transition form factor of the η meson. The transition form factor of the η meson describes the electromagnetic structure of the meson. The study of the Dalitz decay helps to calculate the transition form factor of the η meson. When a particle is point-like it's decay rate can be calculated within QED. However, the complex structure of the meson modifies its decay rate. The transition form factor is determined by comparing the lepton-antilepton invariant mass distribution with QED. For this study data on proton-proton reaction at a beam energy of 1.4 GeV has been collected with WASA-at-COSY detector at Forschungszentrum Juelich, Germany. In the higher invariant mass region recent theoretical calculations slightly deviate from the fit to the data. We expect better results in the higher invariant mass region than previous measurements. The preliminary results of the analysis will be presented.

True versus perturbed forest inventory plot locations for modeling: a simulation study

Treesearch

John W. Coulston; Kurt H. Riitters; Ronald E. McRoberts; William D. Smith

2006-01-01

USDA Forest Service Forest Inventory and Analysis plot information is widely used for timber inventories, forest health assessments, and environmental risk analyses. With few exceptions, true plot locations are not revealed; the plot coordinates are manipulated to obscure the location of field plots and thereby preserve plot integrity. The influence of perturbed plot...

KLOE results on light meson spectroscopy and prospects for KLOE-2

NASA Astrophysics Data System (ADS)

Gauzzi, Paolo; KLOE-2 Collaboration

2012-03-01

The results obtained by the KLOE Collaboration on light meson spectroscopy are presented. The radiative decay phi → ηγ have been used to study several η decay channels. The Dalitz plot distributions of the η → 3π decays, both in charged and neutral final states have been measured. The box anomaly contribution in η → π+ π-γ has been investigated in, and the rare decays η → π0γγ, η → π+π-e+e- and η → e+e-e+e- have been measured. Also the strategy for the measurement of the transition form factor of phi → ηe+e- is described. The radiateve process phi → η'γ has been used to study the η' → ηππ decay channels, obtaining a measurement of the pseudoscalar mixing angle, and finding an evidence for a gluonium content of η'. The decays phi → PPγ where P means a pseudoscalar meson, have been exploited to investigate the light scalar mesons, f0(980), a0(980), and σ(600). The couplings of the scalar mesons to Kbar K, ππ or ππ0, and to the phi resonance have been measured. The prospects for the new KLOE-2 data-taking just started at the upgraded DAΦNE with an upgraded detector are described.

Model-independent plot of dynamic PET data facilitates data interpretation and model selection.

PubMed

Munk, Ole Lajord

2012-02-21

When testing new PET radiotracers or new applications of existing tracers, the blood-tissue exchange and the metabolism need to be examined. However, conventional plots of measured time-activity curves from dynamic PET do not reveal the inherent kinetic information. A novel model-independent volume-influx plot (vi-plot) was developed and validated. The new vi-plot shows the time course of the instantaneous distribution volume and the instantaneous influx rate. The vi-plot visualises physiological information that facilitates model selection and it reveals when a quasi-steady state is reached, which is a prerequisite for the use of the graphical analyses by Logan and Gjedde-Patlak. Both axes of the vi-plot have direct physiological interpretation, and the plot shows kinetic parameter in close agreement with estimates obtained by non-linear kinetic modelling. The vi-plot is equally useful for analyses of PET data based on a plasma input function or a reference region input function. The vi-plot is a model-independent and informative plot for data exploration that facilitates the selection of an appropriate method for data analysis. Copyright © 2011 Elsevier Ltd. All rights reserved.

A data-driven approach to {{\\rm{\\pi }}}^{0},{\\rm{\\eta }} and {{\\rm{\\eta }}}^{\\prime} single and double Dalitz decays

NASA Astrophysics Data System (ADS)

Escribano, Rafel; Gonzàlez-Solís, Sergi

2018-01-01

The dilepton invariant mass spectra and integrated branching ratios of the single and double Dalitz decays {\\mathscr{P}}\\to {{{l}}}+{{{l}}}-{{γ }} and {\\mathscr{P}}\\to {{{l}}}+{{{l}}}-{{{l}}}+{{{l}}}- ({\\mathscr{P}}={{{π }}}0,{{η }},{{{η }}}\\prime; {{l}}={{e}} or {{μ }}) are predicted by means of a data-driven approach based on the use of rational approximants applied to {{{π }}}0,{{η }} and {{{η }}}\\prime transition form factor experimental data in the space-like region. Supported by the FPI scholarship BES-2012-055371 (S.G-S), the Secretaria d’Universitats i Recerca del Departament d’Economia i Coneixement de la Generalitat de Catalunya under grant 2014 SGR 1450, the Ministerio de Ciencia e Innovación under grant FPA2011-25948, the Ministerio de Economía y Competitividad under grants CICYT-FEDER-FPA 2014-55613-P and SEV-2012-0234, the Spanish Consolider-Ingenio 2010 Program CPAN (CSD2007-00042), and the European Commission under program FP7-INFRASTRUCTURES-2011-1 (283286) S.G-S also Received Support from the CAS President’s International Fellowship Initiative for Young International Scientist (2017PM0031)

Measurement of Dielectron Spectra with the Hadron Blind Detector in PHENIX

NASA Astrophysics Data System (ADS)

Sun, Jiayin

2013-04-01

Dielectrons are an important color neutral probe for studying the evolution of the hot dense medium created by heavy ion collisions at RHIC. At low mass region, dielectron spectra consists mainly of direct photons and light vector mesons, and give insight on the earliest stages of the collisions and thus constrain theoretical models on thermalization and chiral symmetry restoration in heavy ion collisions. At intermediate and high mass region, there are significant contributions from charm and bottom. The region was utilized to measure cross sections of open charm and open bottom, as well as quarkonium suppression. The measurement of the dielectron spectra, however, suffers from an unfavorable signal to background ratio. Random combination of electron positron pairs from unrelated sources, mostly Dalitz decay of π0 and external conversion of decay photon to electrons, are the main contributor to the background. The Hadron Blind Detector, a windowless proximity focusing Cerenkov detector, is designed to reduce this background by identifying electron tracks from photon conversions and π0 Dalitz decays. The detector has been installed and operated in PHENIX in 2009 and 2010, where Au+Au and reference p+p data sets were taken. Results from these data sets will be presented.

Development of the Veritas plot and its application in cardiac surgery: an evidence-synthesis graphic tool for the clinician to assess multiple meta-analyses reporting on a common outcome.

PubMed

Panesar, Sukhmeet S; Rao, Christopher; Vecht, Joshua A; Mirza, Saqeb B; Netuveli, Gopalakrishnan; Morris, Richard; Rosenthal, Joe; Darzi, Ara; Athanasiou, Thanos

2009-10-01

Meta-analyses may be prone to generating misleading results because of a paucity of experimental studies (especially in surgery); publication bias; and heterogeneity in study design, intervention and the patient population of included studies. When investigating a specific clinical or scientific question on which several relevant meta-analyses may have been published, value judgments must be applied to determine which analysis represents the most robust evidence. These value judgments should be specifically acknowledged. We designed the Veritas plot to explicitly explore important elements of quality and to facilitate decision-making by highlighting specific areas in which meta-analyses are found to be deficient. Furthermore, as a graphic tool, it may be more intuitive than when similar data are presented in a tabular or text format. The Veritas plot is an adaption of the radar plot, a graphic tool for the description of multiattribute data. Key elements of meta-analytical quality such as heterogeneity, publication bias and study design are assessed. Existing qualitative methods such as the Assessment of Multiple Systematic Reviews (AMSTAR) tool have been incorporated in addition to important considerations when interpreting surgical meta-analyses such as the year of publication and population characteristics. To demonstrate the potential of the Veritas plot to inform clinical practice, we apply the Veritas plot to the meta-analytical literature comparing the incidence of 30-day stroke in off-pump coronary artery bypass surgery and conventional coronary artery bypass surgery. We demonstrate that a visually-stimulating and practical evidence-synthesis tool can direct the clinician and scientist to a particular meta-analytical study to inform clinical practice. The Veritas plot is also cumulative and allowed us to assess the quality of evidence over time. We have presented a practical graphic application for scientists and clinicians to identify and interpret variability in meta-analyses. Although further validation of the Veritas plot is required, it may have the potential to contribute to the implementation of evidence-based practice.

Hyperon and hyperon resonance properties from charm baryon decays at BABAR

NASA Astrophysics Data System (ADS)

Ziegler, Veronique

This thesis describes studies of hyperons and hyperon resonances produced in charm baryon decays at BABAR. Using two-body decays of the X0c and W0c , it is shown, for the first time, that the spin of the O - is 3/2. The O- analysis procedures are extended to three-body final states and properties of the xi(1690)0 are extracted from a detailed isobar model analysis of the L+c → ΛK¯0K + Dalitz plot. The mass and width values of the xi(1690) 0 are measured with much greater precision than attained previously. The hypothesis that the spin of the xi(1690) resonance is 1/2 yields an excellent description of the data, while spin values 3/2 and 5/2 are disfavored. The Λa0(980)+ decay mode of the L+c is observed for the first time. Similar techniques are then used to study xi(1530)0 production in L+c decay. The spin of the xi(1530) is established for the first time to be 3/2. The existence of an S-wave amplitude in the xi -pi+ system is shown, and its interference with the xi(1530) 0 amplitude provides the first clear demonstration of the Breit-Wigner phase motion expected for the xi(1530). The xi-pi + mass distribution in the vicinity of the xi(1690)0 exhibits interesting structure which may be interpreted as indicating that the xi(1690) has negative parity.

Integrating P3 Data Into P2 Analyses: What is the Added Value

Treesearch

James R. Steinman

2001-01-01

The Forest Inventory and Analysis and Forest Health Monitoring Programs of the USDA Forest Service are integrating field procedures for measuring their networks of plots throughout the United States. These plots are now referred to as Phase 2 (P2) and Phase 3 (P3) plots, respectively, and 1 out of every 16 P2 plots will also be a P3 plot. Mensurational methods will be...

Detection of amblyopia utilizing generated retinal reflexes

NASA Technical Reports Server (NTRS)

Kerr, J. H.; Hay, S. H.

1981-01-01

Investigation confirmed that GRR images can be consistently obtained and that these images contain information required to detect the optical inequality of one eye compared to the fellow eye. Digital analyses, electro-optical analyses, and trained observers were used to evaluate the GRR images. Two and three dimensional plots were made from the digital analyses results. These plotted data greatly enhanced the GRR image content, and it was possible for nontrained observers to correctly identify normal vs abnormal ocular status by viewing the plots. Based upon the criteria of detecting equality or inequality of ocular status of a person's eyes, the trained observer correctly identified the ocular status of 90% of the 232 persons who participated in this program.

Practical Considerations When Using Perturbed Forest Inventory Plot Locations To Develop Spatial Models: A Case Study

Treesearch

John W. Coulston; Gregory A. Reams; Ronald E. McRoberts; William D. Smith

2006-01-01

U.S. Department of Agriculture Forest Service Forest Inventory and Analysis plot information is used in many capacities including timber inventories, forest health assessments, and environmental risk analyses. With few exceptions, actual plot locations cannot be revealed to the general public. The public does, however, have access to perturbed plot coordinates. The...

Toward a clearer portrayal of confounding bias in instrumental variable applications.

PubMed

Jackson, John W; Swanson, Sonja A

2015-07-01

Recommendations for reporting instrumental variable analyses often include presenting the balance of covariates across levels of the proposed instrument and levels of the treatment. However, such presentation can be misleading as relatively small imbalances among covariates across levels of the instrument can result in greater bias because of bias amplification. We introduce bias plots and bias component plots as alternative tools for understanding biases in instrumental variable analyses. Using previously published data on proposed preference-based, geography-based, and distance-based instruments, we demonstrate why presenting covariate balance alone can be problematic, and how bias component plots can provide more accurate context for bias from omitting a covariate from an instrumental variable versus non-instrumental variable analysis. These plots can also provide relevant comparisons of different proposed instruments considered in the same data. Adaptable code is provided for creating the plots.

Human exposure to soil contaminants in subarctic Ontario, Canada.

PubMed

Reyes, Ellen Stephanie; Liberda, Eric Nicholas; Tsuji, Leonard James S

2015-01-01

Chemical contaminants in the Canadian subarctic present a health risk with exposures primarily occurring via the food consumption. Characterization of soil contaminants is needed in northern Canada due to increased gardening and agricultural food security initiatives and the presence of known point sources of pollution. A field study was conducted in the western James Bay Region of Ontario, Canada, to examine the concentrations of polychlorinated biphenyls, dichlorodiphenyltrichloroethane and its metabolites (ΣDDT), other organochlorines, and metals/metalloids in potentially contaminated agriculture sites. Exposure pathways were assessed by comparing the estimated daily intake to acceptable daily intake values. Ninety soil samples were collected at random (grid sampling) from 3 plots (A, B, and C) in Fort Albany (on the mainland), subarctic Ontario, Canada. The contaminated-soil samples were analysed by gas chromatography with an electron capture detector or inductively coupled plasma mass spectrometer. The range of ΣDDT in 90 soil samples was below the limit of detection to 4.19 mg/kg. From the 3 soil plots analysed, Plot A had the highest ΣDDT mean concentration of 1.12 mg/kg, followed by Plot B and Plot C which had 0.09 and 0.01 mg/kg, respectively. Concentrations of other organic contaminants and metals in the soil samples were below the limit of detection or found in low concentrations in all plots and did not present a human health risk. Exposure analyses showed that the human risk was below regulatory thresholds. However, the ΣDDT concentration in Plot A exceeded soil guidelines set out by the Canadian Council of Ministers of the Environment of 0.7 mg/kg, and thus the land should not be used for agricultural or recreational purposes. Both Plots B and C were below threshold limits, and this land can be used for agricultural purposes.

Precision study of the η → μ+μ-γ and ω → μ+μ-π0 electromagnetic transition form-factors and of the ρ → μ+μ- line shape in NA60

NASA Astrophysics Data System (ADS)

Arnaldi, R.; Banicz, K.; Borer, K.; Castor, J.; Chaurand, B.; Chen, W.; Cicalò, C.; Colla, A.; Cortese, P.; Damjanovic, S.; David, A.; de Falco, A.; Devaux, A.; Ducroux, L.; En'yo, H.; Fargeix, J.; Ferretti, A.; Floris, M.; Förster, A.; Force, P.; Guettet, N.; Guichard, A.; Gulkanian, H.; Heuser, J. M.; Jarron, P.; Keil, M.; Kluberg, L.; Li, Z.; Lourenço, C.; Lozano, J.; Manso, F.; Martins, P.; Masoni, A.; Neves, A.; Ohnishi, H.; Oppedisano, C.; Parracho, P.; Pillot, P.; Poghosyan, T.; Puddu, G.; Radermacher, E.; Ramalhete, P.; Rosinsky, P.; Scomparin, E.; Seixas, J.; Serci, S.; Shahoyan, R.; Sonderegger, P.; Specht, H. J.; Tieulent, R.; Uras, A.; Usai, G.; Veenhof, R.; Wöhri, H. K.

2016-06-01

The NA60 experiment studied low-mass muon pair production in proton-nucleus (p-A) collisions using a 400 GeV proton beam at the CERN SPS. The low-mass dimuon spectrum is well described by the superposition of the two-body and Dalitz decays of the light neutral mesons η, ρ, ω, η‧ and ϕ, and no evidence of in-medium effects is found. A new high-precision measurement of the electromagnetic transition form factors of the η and ω was performed, profiting from a 10 times larger data sample than the peripheral In-In sample previously collected by NA60. Using the pole-parameterisation | F (M)|2 =(1 -M2 /Λ2)- 2 we find Λη-2 = 1.934 ± 0.067 (stat.) ±0.050 (syst.) (GeV /c2)-2 and Λω-2 = 2.223 ± 0.026 (stat.) ±0.037 (syst.) (GeV /c2)-2. An improved value of the branching ratio of the Dalitz decay ω →μ+μ-π0 is also obtained, with BR (ω →μ+μ-π0) = [ 1.41 ± 0.09 (stat.) ± 0.15 (syst.) ] ×10-4. Further results refer to the ρ line shape and a new limit on ρ / ω interference in hadron interactions.

Study of light mesons with WASA-at-COSY

NASA Astrophysics Data System (ADS)

Prencipe, Elisabetta

2014-06-01

The WASA detector, operating at the COSY facility in Jülich (Germany) has been collecting data since 2007. The experiment allows to perform studies of light mesons, such as π0, η and ω rare decay processes, in order to perform precise measurements of branching ratios, determine Dalitz plot parameters, test symmetry and symmetry breaking, and evaluate transition form factors. In the experiments a proton or deuteron beam impinged on a pellet target of hydrogen or deuterium, which allows the reactions proton-proton (pp) or proton-deuteron (pd). A high-statistics sample of η mesons has been collected: in the reaction pd →3He η, 3×107η mesons were tagged at a beam energy of 1.0 GeV, while 5×108η mesons were produced in the reaction pp → ppη at 1.4 GeV. This corresponds to the production of 10 η/s and 100 η/s, respectively, for the two reaction processes. In the pp dataset a higher background level is found compared to the pd data set. In both cases, we identify the η mesons by means of the missing mass derived from the recoil particles. A kinematic fit largely rejects the background in our analysis. The advantage in using the pp dataset is that the production of η mesons is almost a factor of 10 higher than in the pd fusion to 3He. As we plan to measure the branching ratios of very rare processes, high statistics is needed. A summary of the recent activity on the study of light mesons with WASA-at-COSY here is given.

Automated mesostructural analyses using GIS, Beta test: Paleozoic structures from the New Jersey Great Valley region

DOE Office of Scientific and Technical Information (OSTI.GOV)

Herman, G.C.; French, M.A.; Monteverde, D.H.

1993-03-01

An automated method has been developed for representing outcrop data on geologic structures on maps. Using a MS-DOS custom database management system in conjunction with the ARC/INFO Geographic Information System (GIS), trends of geologic structures are plotted with user-specific symbols. The length of structural symbols can be frequency-weighted based on collective values from structural domains. The PC-based data manager is the NJGS Field data Management System (FMS) Version 2.0 which includes sort, output, and analysis functions for structural data input in either azimuth or quadrant form. Program options include lineament sorting, data output to other data management and analysis software,more » and a circular histogram (rose diagram) routine for trend frequency analysis. Trends can be displayed with either half-or full-rose diagrams using either 10[degree] sectors or one degree spikes for strike, trend, or dip azimuth readings. Scalar and vector statistics are both included. For the mesostructural analysis, ASCII files containing the station number, structural trend and inclination, and plot-symbol-length value are downloaded from FMS and uploaded into an ARC/INFO macro which sequentially plots the information. Plots can be generated in conjunction with any complimentary GIS coverage for various types of spatial analyses. Mesostructural plots can be used for regional tectonic analyses, for hydrogeologic analysis of fractured bedrock aquifers, or for ground-truthing data from fracture-trace or lineament analyses.« less

Combining FIA plot data with topographic variables: Are precise locations needed?

Treesearch

Stephen P. Prisley; Huei-Jin Wang; Philip J Radtke; John Coulston

2009-01-01

Plot data from the USFS FIA program could be combined with terrain variables to attempt to explain how terrain characteristics influence forest growth, species composition, productivity, fire behavior, wildlife habitat, and other phenomena. While some types of analyses using FIA data have been shown to be insensitive to precision of plot locations, it has been...

Adding uncertainty to forest inventory plot locations: effects on analyses using geospatial data

Treesearch

Alexia A. Sabor; Volker C. Radeloff; Ronald E. McRoberts; Murray Clayton; Susan I. Stewart

2007-01-01

The Forest Inventory and Analysis (FIA) program of the USDA Forest Service alters plot locations before releasing data to the public to ensure landowner confidentiality and sample integrity, but using data with altered plot locations in conjunction with other spatially explicit data layers produces analytical results with unknown amounts of error. We calculated the...

Dark Forces at DAΦNE

NASA Astrophysics Data System (ADS)

Curciarello, F.

2015-06-01

The DAΦNE Φ-factory is an ideal place to search for forces beyond the Standard Model. By using the KLOE detector, limits on U-boson coupling ɛ2 of the order of 10-5 ÷ 10-7 and on the αD × ɛ2 product have been set through the study of the Φ Dalitz decay, Uγ events and the Higgsstrahlung process. An improvement of these limits is expected thanks to the KLOE detector and DAΦNE upgrades of KLOE-2.

Precision study of the η → μ +μ -γ and ω → μ +μ -π 0 electromagnetic transition form-factors and of the ρ → μ +μ - line shape in NA60

DOE PAGES

Arnaldi, R.; Banicz, K.; Borer, K.; ...

2016-04-11

The NA60 experiment studied low-mass muon pair production in proton–nucleus (p–A) collisions using a 400 GeV proton beam at the CERN SPS. The low-mass dimuon spectrum is well described by the superposition of the two-body and Dalitz decays of the light neutral mesons η, ρ, ω, η' and φ, and no evidence of in-medium effects is found. A new high-precision measurement of the electromagnetic transition form factors of the η and ω was performed, profiting from a 10 times larger data sample than the peripheral In–In sample previously collected by NA60. Using the pole-parameterisation |F(M)| 2=(1 - M 2/Λ 2)more » -2 we find Λ -2 η = 1.934 ± 0.067 (stat.) ±0.050(syst.) (GeV/c 2) -2 and Λ -2 ω = 2.223 ± 0.026(stat.) ± 0.037(syst.) (GeV/c 2) -2. An improved value of the branching ratio of the Dalitz decay ω → μ +μ -π 0 is also obtained, with BR(ω → μ +μ -π 0) = [1.41 ± 0.09(stat.) ± 0.15(syst.)] ×10 -4. Finally, further results refer to the ρ line shape and a new limit on ρ/ω interference in hadron interactions.« less

Effects on run-off water quantity and quality of urban organic wastes applied in a degraded semi-arid ecosystem.

PubMed

Martínez, F; Casermeiro, M A; Morales, D; Cuevas, G; Walter, Ingrid

2003-04-15

Biosolids and composted municipal solid wastes were surface-applied (0 and 80 Mg ha(-1)) to a degraded soil in a semi-arid environment to determine their effects on the quantity and quality of run-off water. Three and 4 years after application, a simulated rainfall was performed (intensity=942.5 ml min(-1) and kinetic energy=3.92 J m(-2)) on 0.078 m(2) plots using a portable rainfall simulator. The run-off from the different treatment plots was collected and analysed. The type of treatment was highly related to infiltration, run-off and sediment production. The biosolid-treated plots showed the minimum value of total run-off, maximum time to the beginning of run-off and maximum run-off ratio (the relationship between total rainfall and run-off). The MSW-treated plots showed values intermediate between biosolid-treated plots and control plots. Soil losses were also closely related to treatment type. Control plots showed the maximum sediment yield, MSW-treated plots showed intermediate values, and biosolid plots the minimum values for washout. The concentrations of NH(4)-N and PO(4)-P in the run-off water were significantly higher in the treated plots than in control plots. The highest PO(4)-P value, 0.73 mg l(-1), was obtained in the soil treated with biosolids; NO(3)-N concentration also increased significantly with respect to the control and MSW treatments. NH(4)-N concentrations of 15.6 and 15.0 mg l(-1) were recorded in the soils treated with biosolids and MSW, respectively, values approximately five times higher than those obtained in run-off water from untreated soil. However, the concentrations of all these constituents were lower than threshold limits cited in water quality standards for agricultural use. With the exception of Cu, all trace metals analysed in the run-off water were below detection limits.

Use of recurrence plots in the analysis of pupil diameter dynamics in narcoleptics

NASA Astrophysics Data System (ADS)

Keegan, Andrew P.; Zbilut, J. P.; Merritt, S. L.; Mercer, P. J.

1993-11-01

Recurrence plots were used to evaluate pupil dynamics of subjects with narcolepsy. Preliminary data indicate that this nonlinear method of analyses may be more useful in revealing underlying deterministic differences than traditional methods like FFT and counting statistics.

Scalar resonances in a unitary {pi}{pi} S-wave model for D{sup +} {r_arrow} {pi}{sup+}{pi}{sup-}{pi}{sup+}.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boito, D. R.; Dedonder, J.-P.; El-Bennich, B.

We propose a model for D{sup +} {yields} {pi}{sup +}{pi}{sup -}{pi}{sup +} decays following experimental results which indicate that the two-pion interaction in the S wave is dominated by the scalar resonances f{sub 0}(600)/{sigma} and f{sub 0}(980). The weak decay amplitude for D{sup +} {yields} R{pi}{sup +}, where R is a resonance that subsequently decays into {pi}{sup +}{pi}{sup -}, is constructed in a factorization approach. In the S wave, we implement the strong decay R {yields} {pi}{sup +}{pi}{sup -} by means of a scalar form factor. This provides a unitary description of the pion-pion interaction in the entire kinematically allowedmore » mass range m{sub {pi}{pi}}{sup 2} from threshold to about 3 GeV{sup 2}. In order to reproduce the experimental Dalitz plot for D{sup +} {yields} {pi}{sup +}{pi}{sup -}{pi}{sup +}, we include contributions beyond the S wave. For the P wave, dominated by the {rho}(770){sup 0}, we use a Breit-Wigner description. Higher waves are accounted for by using the usual isobar prescription for the f{sub 2}(1270) and {rho}(1450){sup 0}. The major achievement is a good reproduction of the experimental m{sub {pi}{pi}}{sup 2} distribution, and of the partial as well as the total D{sup +} {yields} {pi}{sup +}{pi}{sup -}{pi}{sup +} branching ratios. Our values are generally smaller than the experimental ones. We discuss this shortcoming and, as a by-product, we predict a value for the poorly known D {yields} {sigma} transition form factor at q{sup 2} = m{sub {pi}}{sup 2}.« less

Scalar resonances in a unitary {pi}{pi} S-wave model for D{sup +}{yields}{pi}{sup +}{pi}{sup -}{pi}{sup +}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boito, D. R.; Instituto de Fisica, Universidade de Sao Paulo, C.P. 66318, 05315-970, Sao Paulo, SP; Dedonder, J.-P.

We propose a model for D{sup +}{yields}{pi}{sup +}{pi}{sup -}{pi}{sup +} decays following experimental results which indicate that the two-pion interaction in the S wave is dominated by the scalar resonances f{sub 0}(600)/{sigma} and f{sub 0}(980). The weak decay amplitude for D{sup +}{yields}R{pi}{sup +}, where R is a resonance that subsequently decays into {pi}{sup +}{pi}{sup -}, is constructed in a factorization approach. In the S wave, we implement the strong decay R{yields}{pi}{sup +}{pi}{sup -} by means of a scalar form factor. This provides a unitary description of the pion-pion interaction in the entire kinematically allowed mass range m{sub {pi}}{sub {pi}}{sup 2}more » from threshold to about 3 GeV{sup 2}. In order to reproduce the experimental Dalitz plot for D{sup +}{yields}{pi}{sup +}{pi}{sup -}{pi}{sup +}, we include contributions beyond the S wave. For the P wave, dominated by the {rho}(770){sup 0}, we use a Breit-Wigner description. Higher waves are accounted for by using the usual isobar prescription for the f{sub 2}(1270) and {rho}(1450){sup 0}. The major achievement is a good reproduction of the experimental m{sub {pi}}{sub {pi}}{sup 2} distribution, and of the partial as well as the total D{sup +}{yields}{pi}{sup +}{pi}{sup -}{pi}{sup +} branching ratios. Our values are generally smaller than the experimental ones. We discuss this shortcoming and, as a by-product, we predict a value for the poorly known D{yields}{sigma} transition form factor at q{sup 2}=m{sub {pi}}{sup 2}.« less

Evaluation of the Aviation Weather and NOTAM System (AWANS).

DTIC Science & Technology

1979-06-01

during which graphics were accessed and percent of trans- Analyses of variance were performed action time spent on graphics, are to test for the effects...of the plotted in figure 2. The percentages three independent variables. A total are plotted versus the number of of 24 analyses of variance were...STATUS ON TIME AND PAGE COUNT FOR COMBINED WX/FP BRIEFINGS Monitor Status Off On Diff. Signif . Time (Min) 4.7 4.1 0.6 .05 Page Count 8.3 7.6 0.7 .10

Application of cross recurrence plot for identification of temperature fluctuations synchronization in parallel minichannels

NASA Astrophysics Data System (ADS)

Grzybowski, H.; Mosdorf, R.

2016-09-01

The temperature fluctuations occurring in flow boiling in parallel minichannels with diameter of 1 mm have been experimentally investigated and analysed. The wall temperature was recorded at each minichannel outlet by thermocouple with 0.08 mm diameter probe. The time series where recorded during dynamic two-phase flow instabilities which are accompanied by chaotic temperature fluctuations. Time series were denoised using wavelet decomposition and were analysed using cross recurrence plots (CRP) which enables the study of two time series synchronization.

[Hadroproduction of charmed and bottom mesons (Fermilab experiment E-653): Progress report, June 13, 1983--June 14, 1984

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1984-12-31

(I)Results are given for photoproduction of the D{sup *} at 103 GeV. Clean signals are seen for the decay D{sup *{+-}} {yields} {pi}{sup {+-}}D{sup 0} with the D{sup 0} decaying into both K{sup {-+}}{pi}{sup {+-}} and K{sup {-+}}{pi}{sup {+-}}{pi}{sup 0}. Analysis of the Dalitz plot for the K{pi}{pi} mode gives branching fractions (BFs) for K{sup {minus}}{rho}{sup +}, K{sup *{minus}}{pi}{sup +}, and {anti K}{sup *0}{pi}{sup 0} final states. The BF for D{sup 0} {yields} K{sup {minus}}{rho}{sup +}, much lower than a previous result, is in approximate agreement with the value expected for an l=1/2 final state. (II)Inelastic and elastic J/{psi} photoproductionmore » on H is investigated at 103 GeV. The inelastic cross section with E{sub {psi}}/E{sub {gamma}} {lt} 0.9 is significantly lower than the corresponding result for muoproduction on Fe targets, but consistent with second-order perturbative QCD calculation. The mean p{sub +} of inelastic events is larger than that of elastic events. (III)Analysis of data from the CLEO experiment has yielded evidence for B{bar B} production from the 4S upsilon state. A preliminary cross section is shown. (IV)The SSD prototyping and testing program is described. The detectors performed as expected. (V)Three 24 x 36 mm{sup 2} Centronic detectors 300 microns thick were tested in 650-MeV/c proton and 600-MeV/c pion beams. Charge sharing was found to occur. (VI)Tests of attenuation lengths and light output were made on three types of scintillator: NE102A, PS12, and PS10. PS10 appears the most suitable. (VII)Charge-sharing SSDs of (V) were subject to analysis: checking of pulse heights of single stripes, hit pairs, and hit quads vs theoretical values; resolution of three-point proton/pion tracks, and characterization of devices by charge sum/difference plots of hit pairs. (VIII) Board fabrication and tests of a hadron calorimeter intended to be 91 x 91 sq.in. are discussed. (IX)Testing of an amplifier with LRS hybrid preamp is related.« less

The Role of Recurrence Plots in Characterizing the Output-Unemployment Relationship: An Analysis

PubMed Central

Caraiani, Petre; Haven, Emmanuel

2013-01-01

We analyse the output-unemployment relationship using an approach based on cross-recurrence plots and quantitative recurrence analysis. We use post-war period quarterly U.S. data. The results obtained show the emergence of a complex and interesting relationship. PMID:23460814

SPRUCE Peat Physical and Chemical Characteristics from Experimental Plot Cores, 2012

DOE Data Explorer

Iversen, C. M. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hanson, P. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Brice, D. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Phillips, J. R. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; McFarlane, K. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hobbie, E. A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Kolka, R. K. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2012-01-01

This data set reports the results of physical and chemical analyses of peat core samples from the SPRUCE experimental study plots located in the S1-Bog. On August 13-15, 2012, a team of SPRUCE investigators and collaborators collected core samples of peat in the SPRUCE experimental plots. The goal was to characterize the biological, physical, and chemical characteristics of peat, and how those characteristics changed throughout the depth profile of the bog, prior to the initialization of the SPRUCE experimental warming and CO2 treatments. Cores were collected from 16 experimental plots; samples were collected from the hummock and hollow surfaces to depths of 200-300 cm in defined increments. Three replicate cores were collected from both hummock and hollow locations in each plot. The coring locations within each plot were mapped

Simpson's paradox visualized: The example of the Rosiglitazone meta-analysis

PubMed Central

Rücker, Gerta; Schumacher, Martin

2008-01-01

Background Simpson's paradox is sometimes referred to in the areas of epidemiology and clinical research. It can also be found in meta-analysis of randomized clinical trials. However, though readers are able to recalculate examples from hypothetical as well as real data, they may have problems to easily figure where it emerges from. Method First, two kinds of plots are proposed to illustrate the phenomenon graphically, a scatter plot and a line graph. Subsequently, these can be overlaid, resulting in a overlay plot. The plots are applied to the recent large meta-analysis of adverse effects of rosiglitazone on myocardial infarction and to an example from the literature. A large set of meta-analyses is screened for further examples. Results As noted earlier by others, occurrence of Simpson's paradox in the meta-analytic setting, if present, is associated with imbalance of treatment arm size. This is well illustrated by the proposed plots. The rosiglitazone meta-analysis shows an effect reversion if all trials are pooled. In a sample of 157 meta-analyses, nine showed an effect reversion after pooling, though non-significant in all cases. Conclusion The plots give insight on how the imbalance of trial arm size works as a confounder, thus producing Simpson's paradox. Readers can see why meta-analytic methods must be used and what is wrong with simple pooling. PMID:18513392

Michigan's forests, 2004: statistics and quality assurance

Treesearch

Scott A. Pugh; Mark H. Hansen; Gary Brand; Ronald E. McRoberts

2010-01-01

The first annual inventory of Michigan's forests was completed in 2004 after 18,916 plots were selected and 10,355 forested plots were visited. This report includes detailed information on forest inventory methods, quality of estimates, and additional tables. An earlier publication presented analyses of the inventoried data (Pugh et al. 2009).

Plot Description (PD)

Treesearch

Robert E. Keane

2006-01-01

The Plot Description (PD) form is used to describe general characteristics of the FIREMON macroplot to provide ecological context for data analyses. The PD data characterize the topographical setting, geographic reference point, general plant composition and cover, ground cover, fuels, and soils information. This method provides the general ecological data that can be...

Diameter Growth Models for Inventory Applications

Treesearch

Ronald E. McRoberts; Christopher W. Woodall; Veronica C. Lessard; Margaret R. Holdaway

2002-01-01

Distant-independent, individual-tree, diametar growth models were constructed to update information for forest inventory plots measured in previous years. The models are nonlinear in the parameters and were calibrated weighted nonlinear least squares techniques and forest inventory plot data. Analyses of residuals indicated that model predictions compare favorably to...

Sixth plot of the carcinogenic potency database: results of animal bioassays published in the General Literature 1989 to 1990 and by the National Toxicology Program 1990 to 1993.

PubMed Central

Gold, L S; Manley, N B; Slone, T H; Garfinkel, G B; Ames, B N; Rohrbach, L; Stern, B R; Chow, K

1995-01-01

This paper presents two types of information from the Carcinogenic Potency Database (CPDB): (a) the sixth chronological plot of analyses of long-term carcinogenesis bioassays, and (b) an index to chemicals in all six plots, including a summary compendium of positivity and potency for each chemical (Appendix 14). The five earlier plots of the CPDB have appeared in this journal, beginning in 1984 (1-5). Including the plot in this paper, the CPDB reports results of 5002 experiments on 1230 chemicals. This paper includes bioassay results published in the general literature between January 1989 and December 1990, and in Technical Reports of the National Toxicology Program between January 1990 and June 1993. Analyses are included on 17 chemicals tested in nonhuman primates by the Laboratory of Chemical Pharmacology, National Cancer Institute. This plot presents results of 531 long-term, chronic experiments of 182 test compounds and includes the same information about each experiment in the same plot format as the earlier papers: the species and strain of test animal, the route and duration of compound administration, dose level and other aspects of experimental protocol, histopathology and tumor incidence, TD50 (carcinogenic potency) and its statistical significance, dose response, author's opinion about carcinogenicity, and literature citation. We refer the reader to the 1984 publications (1,6,7) for a detailed guide to the plot of the database, a complete description of the numerical index of carcinogenic potency, and a discussion of the sources of data, the rationale for the inclusion of particular experiments and particular target sites, and the conventions adopted in summarizing the literature. The six plots of the CPDB are to be used together since results of individual experiments that were published earlier are not repeated. Appendix 14 is designed to facilitate access to results on all chemicals. References to the published papers that are the source of experimental data are reported in each of the published plots. For readers using the CPDB extensively, a combined plot is available of all results from the six separate plot papers, ordered alphabetically by chemical; the combined plot in printed form or on computer tape or diskette is available from the first author. A SAS database is also available. PMID:8741772

Master plot analysis of microcracking in graphite/epoxy and graphite/PEEK laminates

NASA Technical Reports Server (NTRS)

Nairn, John A.; Hu, Shoufeng; Bark, Jong Song

1993-01-01

We used a variational stress analysis and an energy release rate failure criterion to construct a master plot analysis of matrix microcracking. In the master plot, the results for all laminates of a single material are predicted to fall on a single line whose slope gives the microcracking toughness of the material. Experimental results from 18 different layups of AS4/3501-6 laminates show that the master plot analysis can explain all observations. In particular, it can explain the differences between microcracking of central 90 deg plies and of free-surface 90 deg plies. Experimental results from two different AS4/PEEK laminates tested at different temperatures can be explained by a modified master plot that accounts for changes in the residual thermal stresses. Finally, we constructed similar master plot analyses for previous literature microcracking models. All microcracking theories that ignore the thickness dependence of the stresses gave poor results.

Standardized mean differences cause funnel plot distortion in publication bias assessments.

PubMed

Zwetsloot, Peter-Paul; Van Der Naald, Mira; Sena, Emily S; Howells, David W; IntHout, Joanna; De Groot, Joris Ah; Chamuleau, Steven Aj; MacLeod, Malcolm R; Wever, Kimberley E

2017-09-08

Meta-analyses are increasingly used for synthesis of evidence from biomedical research, and often include an assessment of publication bias based on visual or analytical detection of asymmetry in funnel plots. We studied the influence of different normalisation approaches, sample size and intervention effects on funnel plot asymmetry, using empirical datasets and illustrative simulations. We found that funnel plots of the Standardized Mean Difference (SMD) plotted against the standard error (SE) are susceptible to distortion, leading to overestimation of the existence and extent of publication bias. Distortion was more severe when the primary studies had a small sample size and when an intervention effect was present. We show that using the Normalised Mean Difference measure as effect size (when possible), or plotting the SMD against a sample size-based precision estimate, are more reliable alternatives. We conclude that funnel plots using the SMD in combination with the SE are unsuitable for publication bias assessments and can lead to false-positive results.

Standardized mean differences cause funnel plot distortion in publication bias assessments

PubMed Central

Van Der Naald, Mira; Sena, Emily S; Howells, David W; IntHout, Joanna; De Groot, Joris AH; Chamuleau, Steven AJ; MacLeod, Malcolm R

2017-01-01

Meta-analyses are increasingly used for synthesis of evidence from biomedical research, and often include an assessment of publication bias based on visual or analytical detection of asymmetry in funnel plots. We studied the influence of different normalisation approaches, sample size and intervention effects on funnel plot asymmetry, using empirical datasets and illustrative simulations. We found that funnel plots of the Standardized Mean Difference (SMD) plotted against the standard error (SE) are susceptible to distortion, leading to overestimation of the existence and extent of publication bias. Distortion was more severe when the primary studies had a small sample size and when an intervention effect was present. We show that using the Normalised Mean Difference measure as effect size (when possible), or plotting the SMD against a sample size-based precision estimate, are more reliable alternatives. We conclude that funnel plots using the SMD in combination with the SE are unsuitable for publication bias assessments and can lead to false-positive results. PMID:28884685

sPlot - the new global vegetation-plot database for addressing trait-environment relationships across the world's biomes

NASA Astrophysics Data System (ADS)

Purschke, Oliver; Dengler, Jürgen; Bruelheide, Helge; Chytrý, Milan; Jansen, Florian; Hennekens, Stephan; Jandt, Ute; Jiménez-Alfaro, Borja; Kattge, Jens; De Patta Pillar, Valério; Sandel, Brody; Winter, Marten

2015-04-01

The trait composition of plant communities is determined by abiotic, biotic and historical factors, but the importance of macro-climatic factors in explaining trait-environment relationships at the local scale remains unclear. Such knowledge is crucial for biogeographical and ecological theory but also relevant to devise management measures to mitigate the negative effects of climate change. To address these questions, an iDiv Working Group has established the first global vegetation-plot database (sPlot). sPlot currently contains ~700,000 plots from over 50 countries and all biomes, and is steadily growing. Approx. 70% of the most frequent species are represented by at least one trait in the global trait database TRY and gap-filled data will become available for the most common traits. We will give an overview about the structure and present content of sPlot in terms of spatial distribution, data properties and trait coverage. We will explain next steps and perspectives, present first cross-biome analyses of community-weighted mean traits and trait variability, and highlight some ecological questions that can be addressed with sPlot.

SPRUCE Porewater Chemistry Data for Experimental Plots Beginning in 2013

DOE Data Explorer

Griffiths, N. A. [Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Sebestyen, S. D. [Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2016-01-01

This data set reports the chemistry of porewater in the SPRUCE plots located in the S1 bog. Sample collection and analyses started in August of 2013 and will continue for the duration of the experiment. Results will be added to this data set and released to the public periodically as quality assurance and publication of results are accomplished. These data are the pre- and post-treatment data from the warming and elevated CO2 treatments associated with the SPRUCE experiment. There are 10 experimental plots in SPRUCE: 5 temperature treatments (+0, +2.25, +4.5, +6.75, +9°C) at ambient CO2, and the same 5 temperature treatments at elevated CO2 (+500 ppm). There are 7 additional ambient plots without experimental enclosures, and thus a total of 17 plots.

Technologies for Teaching and Learning about Box Plots and Statistical Analysis

ERIC Educational Resources Information Center

Forster, Patricia A.

2007-01-01

This paper analyses technology-based instruction on data-analysis with box plots. Examples of instruction taken from the research literature inform a study of two classes of 17 year-old students (upper secondary) in which the mathematical relationships that their teachers targeted are distinguished as being, or not being, relevant to statistical…

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface.

PubMed

Fähnrich, Anke; Krebbel, Moritz; Decker, Normann; Leucker, Martin; Lange, Felix D; Kalies, Kathrin; Möller, Steffen

2017-03-11

Next generation sequencing (NGS) technologies enable studies and analyses of the diversity of both T and B cell receptors (TCR and BCR) in human and animal systems to elucidate immune functions in health and disease. Over the last few years, several algorithms and tools have been developed to support respective analyses of raw sequencing data of the immune repertoire. These tools focus on distinct aspects of the data processing and require a strong bioinformatics background. To facilitate the analysis of T and B cell repertoires by less experienced users, software is needed that combines the most common tools for repertoire analysis. We introduce a graphical user interface (GUI) providing a complete analysis pipeline for processing raw NGS data for human and animal TCR and BCR clonotype determination and advanced differential repertoire studies. It provides two applications. ClonoCalc prepares the raw data for downstream analyses. It combines a demultiplexer for barcode splitting and employs MiXCR for paired-end read merging and the extraction of human and animal TCR/BCR sequences. ClonoPlot wraps the R package tcR and further contributes self-developed plots for the descriptive comparative investigation of immune repertoires. This workflow reduces the amount of programming required to perform the respective analyses and supports both communication and training between scientists and technicians, and across scientific disciplines. The Open Source development in Java and R is modular and invites advanced users to extend its functionality. Software and documentation are freely available at https://bitbucket.org/ClonoSuite/clonocalc-plot .

Physics with WASA-at-COSY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schadmand, Susan

2010-12-28

The WASA detector facility is an internal experiment at the COoler SYnchrotron COSY in Juelich, Germany. The COSY accelerator provides proton and deuteron beams with momenta up to 3.7 GeV/c giving access to hadron physics including the strange quark sector. The WASA-at-COSY physics program focuses on light meson decays where rare decays are used to scrutinize symmetries and symmetry breaking. The structure of hadrons is probed with transition form factors and hadron spectroscopy while hadron dynamics is studied via reaction dynamics and few body reactions. Goals and status are reported with special emphasis on the meson Dalitz decays.

Water use and water use efficiency after thinning in Aleppo pine plantation in Southwest of Valencia, Spain

NASA Astrophysics Data System (ADS)

Fernandes, Tarcísio José Gualberto; Damaso Del Campo, Antonio; Gonzáles-Sanchís, María

2014-05-01

Mediterranean forests need a proactive adaptive silviculture in the face of global change, being their water-use (WU) and water use efficiency (WUE) the key factors to forest managers. Thinning, as a silvicultural practice, has the potential to alter the water potential gradients that exist between soil and canopy. As a result, a change in the amount of water used by trees is produced. The aim of this study is to analyse the effects of the adaptive silviculture on the water-use and water-use efficiency. To that end, both WU and WUE, are measured in an Aleppo pine plantation, where different thinning intensities were applied. The experimental set-up consisted of four plots, three of them corresponding to thinning treatments in 2008 at different intensities High, Middle and Low plus an unthinned plot - control. Additionally, a plot next to the treatment, thinned with High intensity in 1998 was sampled to assess the longer-term effects of thinning. The plots are located at Southwest of Valencia-Spain. WU was measured in four trees per plot on the period April 2009 to May 2011 using HRM sapflow-sensors. WUE was described following the Carbon stable isotope theory by a dendrochronological approach. A stable isotope analysis was performed in the same trees used to measure sapflow. The analysed rings were those correspondent to the 3 previous years to the thinning, and the following after the treatment. The results from this study indicate that stand WU is significantly different (p<0.05) in each tested treatment, being higher in control plot, followed by Low, Medium and Heavy treatments. However, considering only the tree, the average WU was higher in the Heavy treatment. No significantly differences were found between low and control trees. The dendrochronological analyses showed a general variability in ring width during the initial growth (first 15 years). In the following years, the ring widths were very small, probably conditioned by climate conditions. However, immediately after thinning, all trees showed a significant increase when compared with control. The WUE show different patterns in dry and wet years, and between thinned and control plots. The correlation between WU and WUE was higher in the thinned plots than in control plot. Different patterns of the relationship between WUE and WU were found during years 2009 and 2010. A positive slope was found in thinned plots during 2008 (Low, Medium and Heavy), while negative slope was described in Heavy thinning 1998 and Control plots. In conclusion the reactions after thinning equally promote an increase in WU (tree transpiration), growth and WUE. However in the control plot the increase of WU produces a decrease of WUE. This probably responds to the lower rate of growth found in this plot. This study shows clearly the impacts of thinning in forest growth, water use and water use efficiency. Some of the effects of thinning have been pointed out in other studies. However, this study introduce a novel contribution relating WU to WUE in a Mediterranean Aleppo pine plantation.

Meta-analyses and Forest plots using a microsoft excel spreadsheet: step-by-step guide focusing on descriptive data analysis.

PubMed

Neyeloff, Jeruza L; Fuchs, Sandra C; Moreira, Leila B

2012-01-20

Meta-analyses are necessary to synthesize data obtained from primary research, and in many situations reviews of observational studies are the only available alternative. General purpose statistical packages can meta-analyze data, but usually require external macros or coding. Commercial specialist software is available, but may be expensive and focused in a particular type of primary data. Most available softwares have limitations in dealing with descriptive data, and the graphical display of summary statistics such as incidence and prevalence is unsatisfactory. Analyses can be conducted using Microsoft Excel, but there was no previous guide available. We constructed a step-by-step guide to perform a meta-analysis in a Microsoft Excel spreadsheet, using either fixed-effect or random-effects models. We have also developed a second spreadsheet capable of producing customized forest plots. It is possible to conduct a meta-analysis using only Microsoft Excel. More important, to our knowledge this is the first description of a method for producing a statistically adequate but graphically appealing forest plot summarizing descriptive data, using widely available software.

Meta-analyses and Forest plots using a microsoft excel spreadsheet: step-by-step guide focusing on descriptive data analysis

PubMed Central

2012-01-01

Background Meta-analyses are necessary to synthesize data obtained from primary research, and in many situations reviews of observational studies are the only available alternative. General purpose statistical packages can meta-analyze data, but usually require external macros or coding. Commercial specialist software is available, but may be expensive and focused in a particular type of primary data. Most available softwares have limitations in dealing with descriptive data, and the graphical display of summary statistics such as incidence and prevalence is unsatisfactory. Analyses can be conducted using Microsoft Excel, but there was no previous guide available. Findings We constructed a step-by-step guide to perform a meta-analysis in a Microsoft Excel spreadsheet, using either fixed-effect or random-effects models. We have also developed a second spreadsheet capable of producing customized forest plots. Conclusions It is possible to conduct a meta-analysis using only Microsoft Excel. More important, to our knowledge this is the first description of a method for producing a statistically adequate but graphically appealing forest plot summarizing descriptive data, using widely available software. PMID:22264277

Presenting simulation results in a nested loop plot.

PubMed

Rücker, Gerta; Schwarzer, Guido

2014-12-12

Statisticians investigate new methods in simulations to evaluate their properties for future real data applications. Results are often presented in a number of figures, e.g., Trellis plots. We had conducted a simulation study on six statistical methods for estimating the treatment effect in binary outcome meta-analyses, where selection bias (e.g., publication bias) was suspected because of apparent funnel plot asymmetry. We varied five simulation parameters: true treatment effect, extent of selection, event proportion in control group, heterogeneity parameter, and number of studies in meta-analysis. In combination, this yielded a total number of 768 scenarios. To present all results using Trellis plots, 12 figures were needed. Choosing bias as criterion of interest, we present a 'nested loop plot', a diagram type that aims to have all simulation results in one plot. The idea was to bring all scenarios into a lexicographical order and arrange them consecutively on the horizontal axis of a plot, whereas the treatment effect estimate is presented on the vertical axis. The plot illustrates how parameters simultaneously influenced the estimate. It can be combined with a Trellis plot in a so-called hybrid plot. Nested loop plots may also be applied to other criteria such as the variance of estimation. The nested loop plot, similar to a time series graph, summarizes all information about the results of a simulation study with respect to a chosen criterion in one picture and provides a suitable alternative or an addition to Trellis plots.

CADDIS Volume 4. Data Analysis: Advanced Analyses - Controlling for Natural Variability: SSD Plot Diagrams

EPA Pesticide Factsheets

Methods for controlling natural variability, predicting environmental conditions from biological observations method, biological trait data, species sensitivity distributions, propensity scores, Advanced Analyses of Data Analysis references.

The fifth plot of the Carcinogenic Potency Database: results of animal bioassays published in the general literature through 1988 and by the National Toxicology Program through 1989.

PubMed Central

Gold, L S; Manley, N B; Slone, T H; Garfinkel, G B; Rohrbach, L; Ames, B N

1993-01-01

This paper is the fifth plot of the Carcinogenic Potency Database (CPDB) that first appeared in this journal in 1984 (1-5). We report here results of carcinogenesis bioassays published in the general literature between January 1987 and December 1988, and in technical reports of the National Toxicology Program between July 1987 and December 1989. This supplement includes results of 412 long-term, chronic experiments of 147 test compounds and reports the same information about each experiment in the same plot format as the earlier papers: the species and strain of test animal, the route and duration of compound administration, dose level and other aspects of experimental protocol, histopathology and tumor incidence, TD50 (carcinogenic potency) and its statistical significance, dose response, author's opinion about carcinogenicity, and literature citation. We refer the reader to the 1984 publications (1,5,6) for a guide to the plot of the database, a complete description of the numerical index of carcinogenic potency, and a discussion of the sources of data, the rationale for the inclusion of particular experiments and particular target sites, and the conventions adopted in summarizing the literature. The five plots of the database are to be used together, as results of individual experiments that were published earlier are not repeated. In all, the five plots include results of 4487 experiments on 1136 chemicals. Several analyses based on the CPDB that were published earlier are described briefly, and updated results based on all five plots are given for the following earlier analyses: the most potent TD50 value by species, reproducibility of bioassay results, positivity rates, and prediction between species.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8354183

Analyses of ACPL thermal/fluid conditioning system

NASA Technical Reports Server (NTRS)

Stephen, L. A.; Usher, L. H.

1976-01-01

Results of engineering analyses are reported. Initial computations were made using a modified control transfer function where the systems performance was characterized parametrically using an analytical model. The analytical model was revised to represent the latest expansion chamber fluid manifold design, and systems performance predictions were made. Parameters which were independently varied in these computations are listed. Systems predictions which were used to characterize performance are primarily transient computer plots comparing the deviation between average chamber temperature and the chamber temperature requirement. Additional computer plots were prepared. Results of parametric computations with the latest fluid manifold design are included.

SnagPRO: snag and tree sampling and analysis methods for wildlife

Treesearch

Lisa J. Bate; Michael J. Wisdom; Edward O. Garton; Shawn C. Clabough

2008-01-01

We describe sampling methods and provide software to accurately and efficiently estimate snag and tree densities at desired scales to meet a variety of research and management objectives. The methods optimize sampling effort by choosing a plot size appropriate for the specified forest conditions and sampling goals. Plot selection and data analyses are supported by...

Hyperspectral remote sensing analysis of short rotation woody crops grown with controlled nutrient and irrigation treatments

Treesearch

Jungho Im; John R. Jensen; Mark Coleman; Eric Nelson

2009-01-01

Hyperspectral remote sensing research was conducted to document the biophysical and biochemical characteristics of controlled forest plots subjected to various nutrient and irrigation treatments. The experimental plots were located on the Savannah River Site near Aiken, SC. AISA hyperspectral imagery were analysed using three approaches, including: (1) normalized...

Ash Leachate Can Reduce Surface Erosion

Treesearch

George J. Holcomb; Philip B. Durgin

1979-01-01

In laboratory analyses of the Larabee soil from north-western California, ash leachate flocculated the clay fractions. As a result, the soil quickly settled out of suspension. To test the hypothesis that field plots on disturbed areas treated with ash leachate would be more resistant to erosion than nontreated plots, a study was done in July and August 1978, on two...

Variations in height-over-age curves for young longleaf pine plantations

Treesearch

William D. Boyer

1983-01-01

Abstract.Some environmental factors related to height growth of longleaf pine (Pinus palustris Mill.) plantations were identified by analyses of data from remeasured plots. A total of 660 plots, mostly from the Southwide Pine Seed Source Study, provided 2,737 height-over-age observations from age 3 through ages 15 or 20 to 22. A...

TEMPEST. Transient 3-D Thermal-Hydraulic

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eyler, L.L.

TEMPEST is a transient, three-dimensional, hydrothermal program that is designed to analyze a range of coupled fluid dynamic and heat transfer systems of particular interest to the Fast Breeder Reactor (FBR) thermal-hydraulic design community. The full three-dimensional, time-dependent equations of motion, continuity, and heat transport are solved for either laminar or turbulent fluid flow, including heat diffusion and generation in both solid and liquid materials. The equations governing mass, momentum, and energy conservation for incompressible flows and small density variations (Boussinesq approximation) are solved using finite-difference techniques. Analyses may be conducted in either cylindrical or Cartesian coordinate systems. Turbulence ismore » treated using a two-equation model. Two auxiliary plotting programs, SEQUEL and MANPLOT, for use with TEMPEST output are included. SEQUEL may be operated in batch or interactive mode; it generates data required for vector plots, contour plots of scalar quantities, line plots, grid and boundary plots, and time-history plots. MANPLOT reads the SEQUEL-generated data and creates the hardcopy plots. TEMPEST can be a valuable hydrothermal design analysis tool in areas outside the intended FBR thermal-hydraulic design community.« less

The albatross plot: A novel graphical tool for presenting results of diversely reported studies in a systematic review

PubMed Central

Jones, Hayley E.; Martin, Richard M.; Lewis, Sarah J.; Higgins, Julian P.T.

2017-01-01

Abstract Meta‐analyses combine the results of multiple studies of a common question. Approaches based on effect size estimates from each study are generally regarded as the most informative. However, these methods can only be used if comparable effect sizes can be computed from each study, and this may not be the case due to variation in how the studies were done or limitations in how their results were reported. Other methods, such as vote counting, are then used to summarize the results of these studies, but most of these methods are limited in that they do not provide any indication of the magnitude of effect. We propose a novel plot, the albatross plot, which requires only a 1‐sided P value and a total sample size from each study (or equivalently a 2‐sided P value, direction of effect and total sample size). The plot allows an approximate examination of underlying effect sizes and the potential to identify sources of heterogeneity across studies. This is achieved by drawing contours showing the range of effect sizes that might lead to each P value for given sample sizes, under simple study designs. We provide examples of albatross plots using data from previous meta‐analyses, allowing for comparison of results, and an example from when a meta‐analysis was not possible. PMID:28453179

US forests are showing increased rates of decline in response to a changing climate

Treesearch

Warren B. Cohen; Zhiqiang Yang; David M. Bell; Stephen V. Stehman

2015-01-01

How vulnerable are US forest to a changing climate? We answer this question using Landsat time series data and a unique interpretation approach, TimeSync, a plot-based Landsat visualization and data collection tool. Original analyses were based on a stratified two-stage cluster sample design that included interpretation of 3858 forested plots. From these data, we...

Estimating and circumventing the effects of perturbing and swapping inventory plot locations

Treesearch

Ronald E. McRoberts; Geoffrey R. Holden; Mark D. Nelson; Greg C. Liknes; Warren K. Moser; Andrew J. Lister; Susan L. King; Elizabeth B. LaPoint; John W. Coulston; W. Brad Smith; Gregory A. Reams

2005-01-01

The Forest Inventory and Analysis (FIA) program of the USDA Forest Service reports data and information about the Nation's forest resources. Increasingly, users request that FIA data and information be reported and distributed in a geospatial context, and they request access to exact plot locations for their own analyses. However, the FIA program is constrained by...

Plot-scale evidence of tundra vegetation change and links to recent summer warming

Treesearch

Sarah C. Elmendorf; Gregory H.R. Henry; Robert D. Hollister; Robert G. Bjork; Noemie Boulanger-Lapointe; Elisabeth J. Cooper; Johannes H.C. Cornelissen; Thomas A. Day; Ellen Dorrepaal; Tatiana G. Elumeeva; Mike Gill; William A. Gould; John Harte; David S. Hik; Annika Hofgaard; David R. Johnson; Jill F. Johnstone; Ingijorg Svala Jonsdottir; Janet C. Jorgenson; Kari Klanderud; Julia A. Klein; Saewan Koh; Gaku Kudo; Mark Lara; Esther Levesque; Borgthor Magnusson; Jeremy L. May; Joel A. Mercado; Anders Michelsen; Ulf Molau; Isla H. Myers-Smith; Steven F. Oberbauer; Vladimir G. Onipchenko; Christian Rixen; Niels Martin Schmidt; Gaius R. Shaver; Marko J. Spasojevic; Pora Ellen Porhallsdottir; Anne Tolvanen; Tiffany Troxler; Craig E. Tweedie; Sandra Villareal; Carl-Henrik Wahren; Xanthe Walker; Patrick J. Webber; Jeffrey M. Welker; Sonja Wipf

2012-01-01

Temperature is increasing at unprecedented rates across most of the tundra biome1. Remote-sensing data indicate that contemporary climate warming has already resulted in increased productivity over much of the Arctic2,3, but plot-based evidence for vegetation transformation is not widespread. We analysed change in tundra vegetation surveyed between 1980 and 2010 in 158...

Lead isotope data bank; 2,624 samples and analyses cited

USGS Publications Warehouse

Doe, Bruce R.

1976-01-01

The Lead Isotope Data Bank (LIDB) was initiated to facilitate plotting data. Therefore, the Bank reflects data most often used in plotting rather than comprises a comprehensive tabulation of lead isotope data. Up until now, plotting was done using card decks processed by computer with tapes plotted by a Gerber plotter and more recently a CRT using a batch mode. Lack of a uniform format for sample identification was not a great impediment. With increase in the size of the bank, hand sorting is becoming prohibitive and ·plans are underway to put the bank into a uniform format on DISK with a card backup so that it may be accessed by use of IRIS on the DECK 10 computer at the U.S.G.S. facility in Denver. Plots will be constructed on a CRT. Entry of the bank into the IRIS accessing program is scheduled for completion in FY 1976

The ectomycorrhizal community of conifer stands on peat soils 12 years after fertilization with wood ash.

PubMed

Klavina, Darta; Pennanen, Taina; Gaitnieks, Talis; Velmala, Sannakajsa; Lazdins, Andis; Lazdina, Dagnija; Menkis, Audrius

2016-02-01

We studied long-term effects of fertilization with wood ash on biomass, vitality and mycorrhizal colonization of fine roots in three conifer forest stands growing in Vacciniosa turf. mel. (V), Myrtillosa turf. mel. (M) and Myrtillosa turf. mel./Caricoso-phragmitosa (MC) forest types on peat soils. Fertilization trials amounting 5 kg/m(2) of wood ash were established 12 years prior to this study. A total of 63 soil samples with roots were collected and analysed. Ectomycorrhizal (ECM) fungi in roots were identified by morphotyping and sequencing of the fungal internal transcribed spacer (ITS) region. In all forest types, fine root biomass was higher in fertilized plots than in control plots. In M forest type, proportion of living fine roots was greater in fertilized plots than in control plots, while in V and MC, the result was opposite. Fifty ECM species were identified, of which eight were common to both fertilized and control plots. Species richness and Shannon diversity index were generally higher in fertilized plots than in control plots. The most common species in fertilized plots were Amphinema byssoides (17.8%) and Tuber cf. anniae (12.2%), while in control plots, it was Tylospora asterophora (18.5%) and Lactarius tabidus (20.3%). Our results showed that forest fertilization with wood ash has long-lasting effect on diversity and composition of ECM fungal communities.

Graphical Data Analysis on the Circle: Wrap-Around Time Series Plots for (Interrupted) Time Series Designs.

PubMed

Rodgers, Joseph Lee; Beasley, William Howard; Schuelke, Matthew

2014-01-01

Many data structures, particularly time series data, are naturally seasonal, cyclical, or otherwise circular. Past graphical methods for time series have focused on linear plots. In this article, we move graphical analysis onto the circle. We focus on 2 particular methods, one old and one new. Rose diagrams are circular histograms and can be produced in several different forms using the RRose software system. In addition, we propose, develop, illustrate, and provide software support for a new circular graphical method, called Wrap-Around Time Series Plots (WATS Plots), which is a graphical method useful to support time series analyses in general but in particular in relation to interrupted time series designs. We illustrate the use of WATS Plots with an interrupted time series design evaluating the effect of the Oklahoma City bombing on birthrates in Oklahoma County during the 10 years surrounding the bombing of the Murrah Building in Oklahoma City. We compare WATS Plots with linear time series representations and overlay them with smoothing and error bands. Each method is shown to have advantages in relation to the other; in our example, the WATS Plots more clearly show the existence and effect size of the fertility differential.

Long-term vegetation monitoring in Great Britain - the Countryside Survey 1978-2007 and beyond

NASA Astrophysics Data System (ADS)

Wood, Claire M.; Smart, Simon M.; Bunce, Robert G. H.; Norton, Lisa R.; Maskell, Lindsay C.; Howard, David C.; Scott, W. Andrew; Henrys, Peter A.

2017-07-01

The Countryside Survey (CS) of Great Britain provides a globally unique series of datasets, consisting of an extensive set of repeated ecological measurements at a national scale, covering a time span of 29 years. CS was first undertaken in 1978 to monitor ecological and land use change in Britain using standardised procedures for recording ecological data from representative 1 km squares throughout the country. The same sites, with some additional squares, were used for subsequent surveys of vegetation undertaken in 1990, 1998 and 2007, with the intention of future surveys. Other data records include soils, freshwater habitats and invertebrates, and land cover and landscape feature diversity and extents. These data have been recorded in the same locations on analogous dates. However, the present paper describes only the details of the vegetation surveys. The survey design is a series of gridded, stratified, randomly selected 1 km squares taken as representative of classes derived from a statistical environmental classification of Britain. In the 1978 survey, 256 one-kilometre sample squares were recorded, increasing to 506 in 1990, 569 in 1998 and 591 in 2007. Initially each square contained up to 11 dispersed vegetation plots but additional plots were later placed in different features so that eventually up to 36 additional sampling plots were recorded, all of which can be relocated where possible (unless the plot has been lost, for example as a consequence of building work), providing a total of 16 992 plots by 2007. Plots are estimated to have a precise relocation accuracy of 85 %. A range of plots located in different land cover types and landscape features (for example, field boundaries) are included. Although a range of analyses have already been carried out, with changes in the vegetation being related to a range of drivers at local and national scales, there is major potential for further analyses, for example in relation to climate change. Although the precise locations of the plots are restricted, largely for reasons of landowner confidentiality, sample sites are intended to be representative of larger areas, and many potential opportunities for further analyses remain. Data from each of the survey years (1978, 1990, 1998, 2007) are available via the following DOIs: Countryside Survey 1978 vegetation plot data (https://doi.org/10.5285/67bbfabb-d981-4ced-b7e7-225205de9c96), Countryside Survey 1990 vegetation plot data (https://doi.org/10.5285/26e79792-5ffc-4116-9ac7-72193dd7f191), Countryside Survey 1998 vegetation plot data (https://doi.org/10.5285/07896bb2-7078-468c-b56d-fb8b41d47065), Countryside Survey 2007 vegetation plot data (https://doi.org/10.5285/57f97915-8ff1-473b-8c77-2564cbd747bc).

The albatross plot: A novel graphical tool for presenting results of diversely reported studies in a systematic review.

PubMed

Harrison, Sean; Jones, Hayley E; Martin, Richard M; Lewis, Sarah J; Higgins, Julian P T

2017-09-01

Meta-analyses combine the results of multiple studies of a common question. Approaches based on effect size estimates from each study are generally regarded as the most informative. However, these methods can only be used if comparable effect sizes can be computed from each study, and this may not be the case due to variation in how the studies were done or limitations in how their results were reported. Other methods, such as vote counting, are then used to summarize the results of these studies, but most of these methods are limited in that they do not provide any indication of the magnitude of effect. We propose a novel plot, the albatross plot, which requires only a 1-sided P value and a total sample size from each study (or equivalently a 2-sided P value, direction of effect and total sample size). The plot allows an approximate examination of underlying effect sizes and the potential to identify sources of heterogeneity across studies. This is achieved by drawing contours showing the range of effect sizes that might lead to each P value for given sample sizes, under simple study designs. We provide examples of albatross plots using data from previous meta-analyses, allowing for comparison of results, and an example from when a meta-analysis was not possible. Copyright © 2017 The Authors. Research Synthesis Methods Published by John Wiley & Sons Ltd.

Surveillance of Site A and Plot M, Report for 2009.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Golchert, N. W.

2010-04-21

The results of the environmental surveillance program conducted at Site A/Plot M in the Palos Forest Preserve area for Calendar Year 2009 are presented. Based on the results of the 1976-1978 radiological characterization of the site, a determination was made that a surveillance program be established. The characterization study determined that very low levels of hydrogen-3 (as tritiated water) had migrated from the burial ground and were present in two nearby hand-pumped picnic wells. The current surveillance program began in 1980 and consists of sample collection and analysis of surface and subsurface water. The results of the analyses are usedmore » to monitor the migration pathway of hydrogen-3 contaminated water from the burial ground (Plot M) to the hand-pumped picnic wells and monitor for the presence of radioactive materials in the environment of the area. Hydrogen-3 in the Red Gate Woods picnic wells was still detected this year, but the average and maximum concentrations were significantly less than found earlier. Hydrogen-3 continues to be detected in a number of wells, boreholes, dolomite holes, and a surface stream. Analyses since 1984 have indicated the presence of low levels of strontium-90 in water from a number of boreholes next to Plot M. The results of the surveillance program continue to indicate that the radioactivity remaining at Site A/Plot M does not endanger the health or safety of the public visiting the site, using the picnic area, or living in the vicinity.« less

Surveillance of Site A and Plot M report for 2010.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Golchert, N. W.

2011-05-31

The results of the environmental surveillance program conducted at Site A/Plot M in the Palos Forest Preserve area for Calendar Year 2010 are presented. Based on the results of the 1976-1978 radiological characterization of the site, a determination was made that a surveillance program be established. The characterization study determined that very low levels of hydrogen-3 (as tritiated water) had migrated from the burial ground and were present in two nearby hand-pumped picnic wells. The current surveillance program began in 1980 and consists of sample collection and analysis of surface and subsurface water. The results of the analyses are usedmore » to monitor the migration pathway of hydrogen-3 contaminated water from the burial ground (Plot M) to the hand-pumped picnic wells and monitor for the presence of radioactive materials in the environment of the area. Hydrogen-3 in the Red Gate Woods picnic wells was still detected this year, but the average and maximum concentrations were significantly less than found earlier. Hydrogen-3 continues to be detected in a number of wells, boreholes, dolomite holes, and a surface stream. Analyses since 1984 have indicated the presence of low levels of strontium-90 in water from a number of boreholes next to Plot M. The results of the surveillance program continue to indicate that the radioactivity remaining at Site A/Plot M does not endanger the health or safety of the public visiting the site, using the picnic area, or living in the vicinity.« less

A computer graphics program for general finite element analyses

NASA Technical Reports Server (NTRS)

Thornton, E. A.; Sawyer, L. M.

1978-01-01

Documentation for a computer graphics program for displays from general finite element analyses is presented. A general description of display options and detailed user instructions are given. Several plots made in structural, thermal and fluid finite element analyses are included to illustrate program options. Sample data files are given to illustrate use of the program.

SigmaPlot 2000, Version 6.00, SPSS Inc. Computer Software Test Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

HURLBUT, S.T.

2000-10-24

SigmaPlot is a vendor software product used in conjunction with the supercritical fluid extraction Fourier transform infrared spectrometer (SFE-FTIR) system. This product converts the raw spectral data to useful area numbers. SigmaPlot will be used in conjunction with procedure ZA-565-301, ''Determination of Moisture by Supercritical Fluid Extraction and Infrared Detection.'' This test plan will be performed in conjunction with or prior to HNF-6936, ''HA-53 Supercritical Fluid Extraction System Acceptance Test Plan'', to perform analyses for water. The test will ensure that the software can be installed properly and will manipulate the analytical data correctly.

A Microsoft-Excel-based tool for running and critically appraising network meta-analyses--an overview and application of NetMetaXL.

PubMed

Brown, Stephen; Hutton, Brian; Clifford, Tammy; Coyle, Doug; Grima, Daniel; Wells, George; Cameron, Chris

2014-09-29

The use of network meta-analysis has increased dramatically in recent years. WinBUGS, a freely available Bayesian software package, has been the most widely used software package to conduct network meta-analyses. However, the learning curve for WinBUGS can be daunting, especially for new users. Furthermore, critical appraisal of network meta-analyses conducted in WinBUGS can be challenging given its limited data manipulation capabilities and the fact that generation of graphical output from network meta-analyses often relies on different software packages than the analyses themselves. We developed a freely available Microsoft-Excel-based tool called NetMetaXL, programmed in Visual Basic for Applications, which provides an interface for conducting a Bayesian network meta-analysis using WinBUGS from within Microsoft Excel. . This tool allows the user to easily prepare and enter data, set model assumptions, and run the network meta-analysis, with results being automatically displayed in an Excel spreadsheet. It also contains macros that use NetMetaXL's interface to generate evidence network diagrams, forest plots, league tables of pairwise comparisons, probability plots (rankograms), and inconsistency plots within Microsoft Excel. All figures generated are publication quality, thereby increasing the efficiency of knowledge transfer and manuscript preparation. We demonstrate the application of NetMetaXL using data from a network meta-analysis published previously which compares combined resynchronization and implantable defibrillator therapy in left ventricular dysfunction. We replicate results from the previous publication while demonstrating result summaries generated by the software. Use of the freely available NetMetaXL successfully demonstrated its ability to make running network meta-analyses more accessible to novice WinBUGS users by allowing analyses to be conducted entirely within Microsoft Excel. NetMetaXL also allows for more efficient and transparent critical appraisal of network meta-analyses, enhanced standardization of reporting, and integration with health economic evaluations which are frequently Excel-based.

Experimental manipulations of snow-depth: Effects on nutrient content of caribou forage

USGS Publications Warehouse

Walsh, Noreen E.; McCabe, Thomas R.; Welker, J.M.; Parsons, A.N.

1997-01-01

We investigated the potential effects of global climate change on arctic tundra vegetation used as caribou forage. A total of 96 experimental plots was established at six sites on the coastal plain of the Arctic National Wildlife Refuge, Alaska, in 1993 and 1994. We erected snow-fences to increase the amount of snow deposition, and therefore delay the date of the snowmelt on 48 plots (referred to as increased snow/late melting plots). We used black mesh netting on the surface of the snow to increase the rate of melting on 24 plots; the remaining 24 plots served as controls. In July 1994, we collected green leaves from Eriophorum vaginatum, Salix planifolia, and Betula nana and analysed these samples for total carbon and total nitrogen content. Ratios of carbon to nitrogen differed among treatments for all three species. Generally, C:N ratios for B. nana and E. vaginatum on increased snow/late melting plots were lower than on control plots. C:N ratios for S. planifolia on increased snow/late melting plots did not differ from controls, but were lower than on plots which started to melt early. These results may be due to the timing of nitrogen translocation from leaf and stem tissue into storage organs, or due to an increase in available nitrogen input to the system. Further sampling is needed to adequately determine the mechanism responsible for increased nitrogen content of caribou forage in areas with increased amount of snow and delayed snowmelt. ?? 1997 Blackwell Science Ltd.

Analysing Structure Dynamics in Arable Soils using X-ray Micro-Tomography

NASA Astrophysics Data System (ADS)

Schlüter, S.; Weller, U.; Vogel, H.-J.

2009-04-01

Structure is a dynamic property of soil. It interacts with many biotic and abiotic features and controls various soil functions. We analyzed soil structure within different plots of the ''Static Fertilisation Experiment'' at the agricultural research station in Bad Lauchstaedt (Germany) using X-ray micro tomography. The aim was to investigate in how far different levels of organic carbon, increased microbial activity and enhanced plant growth affects structural properties of an arable soil. Since 106 years one plot has experienced a constant application of farmyard manure and fertilisers, whereas the other has never been fertilised in this period. Intact soil cores from the chernozem soil at the two plots were taken from a depth of 5 to 15 cm (Ap-horizon) and 35 to 45 cm (Ah-horizon) to analyse structural changes with depth and in two different seasons (spring and summer) to investigate structure dynamics. The pore structure was analysed by quantifying the mean geometrical and topological characteristics of the pore network as a function of pore size. This was done by a combination of Minkowski functionals and morphological size distibution. For small structural features close to the image resolution the results clearly depend on the applied filtering technique and segmentation thresholds. Therefore the application of different image enhancement techniques is discussed. Furthermore, a new method for an automated determination of grey value thesholds for the segmentation of CT-images into pore space and solid is developed and evaluated. We highlight the relevance of image resolution for structure analysis. Results of the structure analysis reveal that the spring samples of the ploughed layer (Ap-horizon) from the fertilised plot have significantly higher macroporosities (P < 0.05) than those from the non-fertilised plot. The internal connectivity of the pore network is better in the fertilised plot and the pore size distribution was found to be different, too. The differences in porosity and pore connectivity increase from spring to summer. Both plots were compacted by a rolling machine in late winter. So the difference in structure dynamics is interpreted as an enhanced structure resiliency in the fertilised and carbon enriched plot after that compaction. A comparison with porosity features of a nearby reference profil under grassland demonstrates that the impact of tillage on pore structure is higher than the different contents in organic carbon. The carbon enriched horizon beneath the ploughed layer (Ah-horizon) shows no differences in pore size distribution and connectivity as a function of fertilisation. Thus, at that soil depth, no long-term effects of fertilization in terms of soil structure are detectable. Obviously, the highly different energy input during 106 years only affects the structure of the top soil.

SU-D-207A-02: Possible Characterization of the Brain Tumor Vascular Environment by a Novel Strategy of Quantitative Analysis in Dynamic Contrast Enhanced MR Imaging: A Combination of Both Patlak and Logan Analyses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yee, S; Chinnaiyan, P; Wloch, J

Purpose: The majority of quantitative analyses involving dynamic contrast enhanced (DCE) MRI have been performed to obtain kinetic parameters such as Ktrans and ve. Such analyses are generally performed assuming a “reversible” tissue compartment, where the tracer is assumed to be rapidly equilibrated between the plasma and tissue compartments. However, some tumor vascular environments may be more suited for a “non-reversible” tissue compartment, where, as with FDG PET imaging, the tracer is continuously deposited into the tissue compartment (or the return back to the plasma compartment is very slow in the imaging time scale). Therefore, Patlak and Logan analyses, whichmore » represent tools for the “non-reversible” and “reversible” modeling, respectively, were performed to better characterize the brain tumor vascular environment. Methods: A voxel-by-voxel analysis was performed to generate both Patlak and Logan plots in two brain tumor patients, one with grade III astrocytoma and the other with grade IV astrocytoma or glioblastoma. The slopes of plots and the r-square were then obtained by linear fitting and compared for each voxel. Results: The 2-dimensional scatter plots of Logan (Y-axis) vs. Patlak slopes (X-axis) clearly showed increased Logan slopes for glioblastoma (Figure 3A). The scatter plots of goodness-of-fit (Figure 3B) also suggested glioblastoma, relative to grade III astrocytoma, might consist of more voxels that are kinetically Logan-like (i.e. rapidly equilibrated extravascular space and active vascular environment). Therefore, the enhanced Logan-like behavior (and the Logan slope) in glioblastoma may imply an increased fraction of active vascular environment, while the enhanced Patlak-like behavior implies the vascular environment permitting a relatively slower washout of the tracer. Conclusion: Although further verification is required, the combination of Patlak and Logan analyses in DCE MRI may be useful in characterizing the tumor vascular environment, and thus, may have implications in tumor grading and monitoring response to anti-vascular therapy.« less

A regional-scale survey and analysis of forest growth and mortality as affected by site and stand factors and acidic deposition

Treesearch

Robert T. Brooks

1994-01-01

Regression analyses were used to identify factors most closely related to species growth and mortality on continuous forest survey plots in Pennsylvania. In 1985, 200 plots with two prior measurements (in the 1960s and 1970s) were selected and measured for a third time to determine periodic forest growth and mortality rates. Growth and mortality were analyzed for...

Dark Searches and γγ Physics at KLOE

NASA Astrophysics Data System (ADS)

Curciarello, Francesca

2017-04-01

The search for a dark sector mediated by a new gauge boson, the dark photon, is motivated by many astrophysical anomalies and by the g - 2 discrepancy. The KLOE experiment, operating at the e+e- DAΦNE collider in Frascati, searched for a visibly-decaying dark photon by investigating the ϕ-Dalitz decay into the η meson, the dark photon production from continuum, and the Higgsstrahlung process. The KLOE-2 run started in November 2014, after the upgrade of both, DAΦNE and the KLOE apparatus. In particular, two high electron and positron tagger stations were installed in the DAΦNE layout to study γγ interactions at 1 GeV. Progress status of the project is given.

A Microsoft-Excel-based tool for running and critically appraising network meta-analyses—an overview and application of NetMetaXL

PubMed Central

2014-01-01

Background The use of network meta-analysis has increased dramatically in recent years. WinBUGS, a freely available Bayesian software package, has been the most widely used software package to conduct network meta-analyses. However, the learning curve for WinBUGS can be daunting, especially for new users. Furthermore, critical appraisal of network meta-analyses conducted in WinBUGS can be challenging given its limited data manipulation capabilities and the fact that generation of graphical output from network meta-analyses often relies on different software packages than the analyses themselves. Methods We developed a freely available Microsoft-Excel-based tool called NetMetaXL, programmed in Visual Basic for Applications, which provides an interface for conducting a Bayesian network meta-analysis using WinBUGS from within Microsoft Excel. . This tool allows the user to easily prepare and enter data, set model assumptions, and run the network meta-analysis, with results being automatically displayed in an Excel spreadsheet. It also contains macros that use NetMetaXL’s interface to generate evidence network diagrams, forest plots, league tables of pairwise comparisons, probability plots (rankograms), and inconsistency plots within Microsoft Excel. All figures generated are publication quality, thereby increasing the efficiency of knowledge transfer and manuscript preparation. Results We demonstrate the application of NetMetaXL using data from a network meta-analysis published previously which compares combined resynchronization and implantable defibrillator therapy in left ventricular dysfunction. We replicate results from the previous publication while demonstrating result summaries generated by the software. Conclusions Use of the freely available NetMetaXL successfully demonstrated its ability to make running network meta-analyses more accessible to novice WinBUGS users by allowing analyses to be conducted entirely within Microsoft Excel. NetMetaXL also allows for more efficient and transparent critical appraisal of network meta-analyses, enhanced standardization of reporting, and integration with health economic evaluations which are frequently Excel-based. PMID:25267416

Using Functional Languages and Declarative Programming to analyze ROOT data: LINQtoROOT

NASA Astrophysics Data System (ADS)

Watts, Gordon

2015-05-01

Modern high energy physics analysis is complex. It typically requires multiple passes over different datasets, and is often held together with a series of scripts and programs. For example, one has to first reweight the jet energy spectrum in Monte Carlo to match data before plots of any other jet related variable can be made. This requires a pass over the Monte Carlo and the Data to derive the reweighting, and then another pass over the Monte Carlo to plot the variables the analyser is really interested in. With most modern ROOT based tools this requires separate analysis loops for each pass, and script files to glue to the results of the two analysis loops together. A framework has been developed that uses the functional and declarative features of the C# language and its Language Integrated Query (LINQ) extensions to declare the analysis. The framework uses language tools to convert the analysis into C++ and runs ROOT or PROOF as a backend to get the results. This gives the analyser the full power of an object-oriented programming language to put together the analysis and at the same time the speed of C++ for the analysis loop. The tool allows one to incorporate C++ algorithms written for ROOT by others. A by-product of the design is the ability to cache results between runs, dramatically reducing the cost of adding one-more-plot and also to keep a complete record associated with each plot for data preservation reasons. The code is mature enough to have been used in ATLAS analyses. The package is open source and available on the open source site CodePlex.

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets

PubMed Central

Nowicka, Malgorzata; Krieg, Carsten; Weber, Lukas M.; Hartmann, Felix J.; Guglietta, Silvia; Becher, Burkhard; Levesque, Mitchell P.; Robinson, Mark D.

2017-01-01

High dimensional mass and flow cytometry (HDCyto) experiments have become a method of choice for high throughput interrogation and characterization of cell populations.Here, we present an R-based pipeline for differential analyses of HDCyto data, largely based on Bioconductor packages. We computationally define cell populations using FlowSOM clustering, and facilitate an optional but reproducible strategy for manual merging of algorithm-generated clusters. Our workflow offers different analysis paths, including association of cell type abundance with a phenotype or changes in signaling markers within specific subpopulations, or differential analyses of aggregated signals. Importantly, the differential analyses we show are based on regression frameworks where the HDCyto data is the response; thus, we are able to model arbitrary experimental designs, such as those with batch effects, paired designs and so on. In particular, we apply generalized linear mixed models to analyses of cell population abundance or cell-population-specific analyses of signaling markers, allowing overdispersion in cell count or aggregated signals across samples to be appropriately modeled. To support the formal statistical analyses, we encourage exploratory data analysis at every step, including quality control (e.g. multi-dimensional scaling plots), reporting of clustering results (dimensionality reduction, heatmaps with dendrograms) and differential analyses (e.g. plots of aggregated signals). PMID:28663787

Coal-seismic, desktop computer programs in BASIC; Part 5, Perform X-square T-square analysis and plot normal moveout lines on seismogram overlay

USGS Publications Warehouse

Hasbrouck, W.P.

1983-01-01

Processing of data taken with the U.S. Geological Survey's coal-seismic system is done with a desktop, stand-alone computer. Programs for this computer are written in the extended BASIC language used by the Tektronix 4051 Graphic System. This report presents computer programs to perform X-square/T-square analyses and to plot normal moveout lines on a seismogram overlay.

The concentration of fear: mice's behavioural and physiological stress responses to different degrees of predation risk

NASA Astrophysics Data System (ADS)

Sánchez-González, Beatriz; Planillo, Aimara; Navarro-Castilla, Álvaro; Barja, Isabel

2018-02-01

Predation is an unavoidable and dangerous fact in the lifetime of prey animals and some sign of the proximity of a predator may be enough to trigger a response in the prey. We investigated whether different degrees of predation risk by red foxes ( Vulpes vulpes) evoke behavioural and physiological stress responses in wood mice ( Apodemus sylvaticus) . We examined the variation in mice responses due to individual factors (sex and reproductive status) and related them to the concentration of the volatile compounds from fox faeces over time. In our experiment, we introduced predation cues into four plots, each subjected to a different concentration treatment (0, 10, 50 and 100% concentration of fresh faeces of red fox), based on the following outline: initial odourless phase 0, phase1 in which predation treatment was renewed daily, and phase 2 in which we renewed the treatment only on the first day. Wood mice were live trapped during all three phases and the physiological response was measured non-invasively by analysing faecal corticosterone metabolites (FCM) in freshly collected faeces. Data were analysed by Generalized Linear Mixed Models. Overall, males were trapped less often than females, and reproductively active individuals from both sexes avoided traps more than non-reproductively active individuals, especially in medium- and high- concentration plots. Variations in FCM concentrations were explained by plot, the interaction between plot and treatment phase, and the interaction between the treatment phase and the reproductive status. During phase 1, we detected a significant rise in FCM levels that increased with predator faecal odour concentration. Additionally, reproductively active individuals showed a strong physiological response during both phases 1 and 2 in all plots, except the control plot. Our results indicated that wood mice are able to discriminate different degrees of predation risk, which allows them to trigger gradual changes in their behavioural and physiological stress responses.

The concentration of fear: mice's behavioural and physiological stress responses to different degrees of predation risk.

PubMed

Sánchez-González, Beatriz; Planillo, Aimara; Navarro-Castilla, Álvaro; Barja, Isabel

2018-01-31

Predation is an unavoidable and dangerous fact in the lifetime of prey animals and some sign of the proximity of a predator may be enough to trigger a response in the prey. We investigated whether different degrees of predation risk by red foxes (Vulpes vulpes) evoke behavioural and physiological stress responses in wood mice (Apodemus sylvaticus). We examined the variation in mice responses due to individual factors (sex and reproductive status) and related them to the concentration of the volatile compounds from fox faeces over time. In our experiment, we introduced predation cues into four plots, each subjected to a different concentration treatment (0, 10, 50 and 100% concentration of fresh faeces of red fox), based on the following outline: initial odourless phase 0, phase1 in which predation treatment was renewed daily, and phase 2 in which we renewed the treatment only on the first day. Wood mice were live trapped during all three phases and the physiological response was measured non-invasively by analysing faecal corticosterone metabolites (FCM) in freshly collected faeces. Data were analysed by Generalized Linear Mixed Models. Overall, males were trapped less often than females, and reproductively active individuals from both sexes avoided traps more than non-reproductively active individuals, especially in medium- and high- concentration plots. Variations in FCM concentrations were explained by plot, the interaction between plot and treatment phase, and the interaction between the treatment phase and the reproductive status. During phase 1, we detected a significant rise in FCM levels that increased with predator faecal odour concentration. Additionally, reproductively active individuals showed a strong physiological response during both phases 1 and 2 in all plots, except the control plot. Our results indicated that wood mice are able to discriminate different degrees of predation risk, which allows them to trigger gradual changes in their behavioural and physiological stress responses.

Ancient human disturbances may be skewing our understanding of Amazonian forests.

PubMed

McMichael, Crystal N H; Matthews-Bird, Frazer; Farfan-Rios, William; Feeley, Kenneth J

2017-01-17

Although the Amazon rainforest houses much of Earth's biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived from fewer than 200 recensus plots. It is well documented that the pre-European inhabitants of Amazonia actively transformed and modified the forest in many regions before their population collapse around 1491 AD; however, the impacts of these ancient disturbances remain entirely unaccounted for in the many highly influential studies using Amazonian forest plots. Here we examine whether Amazonian forest inventory plot locations are spatially biased toward areas with high probability of ancient human impacts. Our analyses reveal that forest inventory plots, and especially forest recensus plots, in all regions of Amazonia are located disproportionately near archaeological evidence and in areas likely to have ancient human impacts. Furthermore, regions of the Amazon that are relatively oversampled with inventory plots also contain the highest values of predicted ancient human impacts. Given the long lifespan of Amazonian trees, many forest inventory and recensus sites may still be recovering from past disturbances, potentially skewing our interpretations of forest dynamics and our understanding of how these forests are responding to global change. Empirical data on the human history of forest inventory sites are crucial for determining how past disturbances affect modern patterns of forest composition and carbon flux in Amazonian forests.

BRepertoire: a user-friendly web server for analysing antibody repertoire data.

PubMed

Margreitter, Christian; Lu, Hui-Chun; Townsend, Catherine; Stewart, Alexander; Dunn-Walters, Deborah K; Fraternali, Franca

2018-04-14

Antibody repertoire analysis by high throughput sequencing is now widely used, but a persisting challenge is enabling immunologists to explore their data to discover discriminating repertoire features for their own particular investigations. Computational methods are necessary for large-scale evaluation of antibody properties. We have developed BRepertoire, a suite of user-friendly web-based software tools for large-scale statistical analyses of repertoire data. The software is able to use data preprocessed by IMGT, and performs statistical and comparative analyses with versatile plotting options. BRepertoire has been designed to operate in various modes, for example analysing sequence-specific V(D)J gene usage, discerning physico-chemical properties of the CDR regions and clustering of clonotypes. Those analyses are performed on the fly by a number of R packages and are deployed by a shiny web platform. The user can download the analysed data in different table formats and save the generated plots as image files ready for publication. We believe BRepertoire to be a versatile analytical tool that complements experimental studies of immune repertoires. To illustrate the server's functionality, we show use cases including differential gene usage in a vaccination dataset and analysis of CDR3H properties in old and young individuals. The server is accessible under http://mabra.biomed.kcl.ac.uk/BRepertoire.

Less is less: a systematic review of graph use in meta-analyses.

PubMed

Schild, Anne H E; Voracek, Martin

2013-09-01

Graphs are an essential part of scientific communication. Complex datasets, of which meta-analyses are textbook examples, benefit the most from visualization. Although a number of graph options for meta-analyses exist, the extent to which these are used was hitherto unclear. A systematic review on graph use in meta-analyses in three disciplines (medicine, psychology, and business) and nine journals was conducted. Interdisciplinary differences, which are mirrored in the respective journals, were revealed, that is, graph use correlates with external factors rather than methodological considerations. There was only limited variation in graph types (with forest plots as the most important representatives), and diagnostic plots were very rare. Although an increase in graph use over time could be observed, it is unlikely that this phenomenon is specific to meta-analyses. There is a gaping discrepancy between available graphic methods and their application in meta-analyses. This may be rooted in a number of factors, namely, (i) insufficient dissemination of new developments, (ii) unsatisfactory implementation in software packages, and (iii) minor attention on graphics in meta-analysis reporting guidelines. Using visualization methods to their full capacity is a further step in using meta-analysis to its full potential. Copyright © 2013 John Wiley & Sons, Ltd.

Recurrence plot analyses suggest a novel reference system involved in newborn spontaneous movements.

PubMed

Assmann, Birte; Thiel, Marco; Romano, Maria C; Niemitz, Carsten

2006-08-01

The movements of newborns have been thoroughly studied in terms of reflexes, muscle synergies, leg coordination, and target-directed arm/hand movements. Since these approaches have concentrated mainly on separate accomplishments, there has remained a clear need for more integrated investigations. Here, we report an inquiry in which we explicitly concentrated on taking such a perspective and, additionally, were guided by the methodological concept of home base behavior, which Ilan Golani developed for studies of exploratory behavior in animals. Methods from nonlinear dynamics, such as symbolic dynamics and recurrence plot analyses of kinematic data received from audiovisual newborn recordings, yielded new insights into the spatial and temporal organization of limb movements. In the framework of home base behavior, our approach uncovered a novel reference system of spontaneous newborn movements.

A spatial analysis of Phytophthora ramorum symptom spread using second-order point pattern and GIS-based analyses

Treesearch

Mark Spencer; Kevin O' Hara

2006-01-01

Phytophthora ramorum is a major source of tanoak (Lithocarpus densiflorus) mortality in the tanoak/redwood (Sequoia sempervirens) forests of central California. This study presents a spatial analysis of the spread of the disease using second-order point pattern and GIS analyses. Our data set includes four plots...

Quantifying Forest Soil Physical Variables Potentially Important for Site Growth Analyses

Treesearch

John S. Kush; Douglas G. Pitt; Phillip J. Craul; William D. Boyer

2004-01-01

Accurate mean plot values of forest soil factors are required for use as independent variables in site-growth analyses. Adequate accuracy is often difficult to attain because soils are inherently widely variable. Estimates of the variability of appropriate soil factors influencing growth can be used to determine the sampling intensity required to secure accurate mean...

Finite Elements Analysis of a Composite Semi-Span Test Article With and Without Discrete Damage

NASA Technical Reports Server (NTRS)

Lovejoy, Andrew E.; Jegley, Dawn C. (Technical Monitor)

2000-01-01

AS&M Inc. performed finite element analysis, with and without discrete damage, of a composite semi-span test article that represents the Boeing 220-passenger transport aircraft composite semi-span test article. A NASTRAN bulk data file and drawings of the test mount fixtures and semi-span components were utilized to generate the baseline finite element model. In this model, the stringer blades are represented by shell elements, and the stringer flanges are combined with the skin. Numerous modeling modifications and discrete source damage scenarios were applied to the test article model throughout the course of the study. This report details the analysis method and results obtained from the composite semi-span study. Analyses were carried out for three load cases: Braked Roll, LOG Down-Bending and 2.5G Up-Bending. These analyses included linear and nonlinear static response, as well as linear and nonlinear buckling response. Results are presented in the form of stress and strain plots. factors of safety for failed elements, buckling loads and modes, deflection prediction tables and plots, and strainage prediction tables and plots. The collected results are presented within this report for comparison to test results.

The Hydrologic Response of Forestry Plantations and Secondary Succession in Comparison to Tropical Mature Forest and Pasture in the Panama Canal Watershed

NASA Astrophysics Data System (ADS)

Litt, G.; Briceno, J. C.; Crouch, T. D.; Ogden, F. L.

2012-12-01

Land use change in the Panama Canal Watershed may have far reaching effects on water quality and water quantity. Dry season water quantity is of particular interest for sustaining and expanding canal operations, therefore an increased understanding of tropical hydrological processes and their relationship to land use may improve management practices by the Panama Canal Authority. The long term Agua Salud Project in the Panama Canal Watershed monitors a number of hydrological factors across various tropical land use types. We hypothesize that the plantations and the secondary succession plot more closely resemble the mature forest's runoff characteristics. In this study we investigate the differences in runoff ratios between the following experimental plots: a teak (tectona grandis) plantation, a native-species plantation and a native secondary succession plot. Results are compared to past analyses on mature forest and pasture control plots while utilizing three years of continuously monitored hydrologic data.

Ancient human disturbances may be skewing our understanding of Amazonian forests

PubMed Central

McMichael, Crystal N. H.; Matthews-Bird, Frazer; Farfan-Rios, William; Feeley, Kenneth J.

2017-01-01

Although the Amazon rainforest houses much of Earth’s biodiversity and plays a major role in the global carbon budget, estimates of tree biodiversity originate from fewer than 1,000 forest inventory plots, and estimates of carbon dynamics are derived from fewer than 200 recensus plots. It is well documented that the pre-European inhabitants of Amazonia actively transformed and modified the forest in many regions before their population collapse around 1491 AD; however, the impacts of these ancient disturbances remain entirely unaccounted for in the many highly influential studies using Amazonian forest plots. Here we examine whether Amazonian forest inventory plot locations are spatially biased toward areas with high probability of ancient human impacts. Our analyses reveal that forest inventory plots, and especially forest recensus plots, in all regions of Amazonia are located disproportionately near archaeological evidence and in areas likely to have ancient human impacts. Furthermore, regions of the Amazon that are relatively oversampled with inventory plots also contain the highest values of predicted ancient human impacts. Given the long lifespan of Amazonian trees, many forest inventory and recensus sites may still be recovering from past disturbances, potentially skewing our interpretations of forest dynamics and our understanding of how these forests are responding to global change. Empirical data on the human history of forest inventory sites are crucial for determining how past disturbances affect modern patterns of forest composition and carbon flux in Amazonian forests. PMID:28049821

Impacts of deer herbivory on vegetation in Rock Creek Park, 2001-2009

USGS Publications Warehouse

Kraft, Cairn C.; Hatfield, Jeff S.

2011-01-01

Starting in 2001, vegetation data have been collected annually in 16 study modules consisting of paired (1x4 m) fenced plots and unfenced control plots located in the upland forests of Rock Creek Park, Washington, D.C. Vegetation data collected from 2001-2009 have been analyzed to determine impacts of deer herbivory on vegetation in the park. Differences between fenced plots and unfenced control plots were analyzed for the following variables: cover provided by various groups of species (woody, herbaceous, native, non-native, trees, shrubs, and woody vines), as well as by individual dominant species, vegetation thickness (a measure of percent cover projected horizontally that provides information on the vertical distribution of vegetation), and species richness overall and for groups of species (woody, herbaceous, native, non-native, trees, shrubs, and woody vines). The analyses were performed using repeated measures analysis of variance (ANOVA) and associated tests. Vegetation in plots protected from deer herbivory for 9 years showed significantly greater vegetative cover compared to plots not protected from deer herbivory. This effect was most pronounced for woody and shrub cover. Cover by the dominant species was not significantly greater in the fenced plots compared to the unfenced control plots, indicating that the significant differences observed for groups were not driven by single species within those groups. With respect to vegetation thickness, results indicate that protection from deer herbivory produced significantly higher levels of vegetation in the fenced plots compared to the unfenced control plots for both the Low (0-30 cm) and Middle (30-110 cm) height classes. Protection from deer herbivory has led to higher overall species richness and higher species richness for woody species, natives, and shrubs compared to plots not receiving protection. There is also evidence that plots protected from deer herbivory and those not receiving this protection are diverging over time with respect to a number of variables such as cover by woody and shrub species, cover in the lowest height class, and species richness of woody and native species. Recommendations were made regarding future sampling.

Investigation of 1 : 1,000 Scale Map Generation by Stereo Plotting Using Uav Images

NASA Astrophysics Data System (ADS)

Rhee, S.; Kim, T.

2017-08-01

Large scale maps and image mosaics are representative geospatial data that can be extracted from UAV images. Map drawing using UAV images can be performed either by creating orthoimages and digitizing them, or by stereo plotting. While maps generated by digitization may serve the need for geospatial data, many institutions and organizations require map drawing using stereoscopic vision on stereo plotting systems. However, there are several aspects to be checked for UAV images to be utilized for stereo plotting. The first aspect is the accuracy of exterior orientation parameters (EOPs) generated through automated bundle adjustment processes. It is well known that GPS and IMU sensors mounted on a UAV are not very accurate. It is necessary to adjust initial EOPs accurately using tie points. For this purpose, we have developed a photogrammetric incremental bundle adjustment procedure. The second aspect is unstable shooting conditions compared to aerial photographing. Unstable image acquisition may bring uneven stereo coverage, which will result in accuracy loss eventually. Oblique stereo pairs will create eye fatigue. The third aspect is small coverage of UAV images. This aspect will raise efficiency issue for stereo plotting of UAV images. More importantly, this aspect will make contour generation from UAV images very difficult. This paper will discuss effects relate to these three aspects. In this study, we tried to generate 1 : 1,000 scale map from the dataset using EOPs generated from software developed in-house. We evaluated Y-disparity of the tie points extracted automatically through the photogrammetric incremental bundle adjustment process. We could confirm that stereoscopic viewing is possible. Stereoscopic plotting work was carried out by a professional photogrammetrist. In order to analyse the accuracy of the map drawing using stereoscopic vision, we compared the horizontal and vertical position difference between adjacent models after drawing a specific model. The results of analysis showed that the errors were within the specification of 1 : 1,000 map. Although the Y-parallax can be eliminated, it is still necessary to improve the accuracy of absolute ground position error in order to apply this technique to the actual work. There are a few models in which the difference in height between adjacent models is about 40 cm. We analysed the stability of UAV images by checking angle differences between adjacent images. We also analysed the average area covered by one stereo model and discussed the possible difficulty associated with this narrow coverage. In the future we consider how to reduce position errors and improve map drawing performances from UAVs.

Development of Soil Characteristics and Plant Communities On Reclaimed and Unreclaimed Spoil Heaps After Coal Mining

NASA Astrophysics Data System (ADS)

Cudlín, Ondřej; Řehák, Zdeněk; Cudlín, Pavel

2016-10-01

The aim of this study was to compare soil characteristics, plant communities and the rate of selected ecosystem function performance on reclaimed and unreclaimed plots (left for spontaneous succession) of different age on spoil heaps. Twelve spoil heaps (three circle plots of radius 12.5 m) near the town Kladno in north-west direction from Prague, created after deep coal mining, were compared. Five mixed soil samples from organo-mineral horizons in each plot were analysed for total content of carbon, nitrogen and phosphorus. In addition, active soil pH (pHH2O) was determined. Plant diversity was determined by vegetation releves. The biodiversity value of the habitat according to the Habitat Valuation Method was assessed and the rate of evapotranspiration function by the Method of Valuation Functions and Services of Ecosystems in the Czech Republic were determined. The higher organo-mineral layers and higher amount of total nitrogen content were found on the older reclaimed and unreclaimed plots than in younger plots. The number of plant species and the total contents of carbon and nitrogen were significantly higher at the unreclaimed plots compared to reclaimed plots. The biodiversity values and evapotranspiration function rate were also higher on unreclaimed plots. From this perspective, it is possible to recommend using of spontaneous succession, together with routine reclamation methods to restore habitats after coal mining. Despite the relatively high age of vegetation in some of selected plots (90 years), both the reclaimed and unreclaimed plots have not reached the stage of potential vegetation near to natural climax. Slow development of vegetation was probably due to unsuitable substrate of spoil heaps and a lack of plant and tree species of natural forest habitats in this area. However, it is probable that vegetation communities on observed spoil heaps in both type of management (reclaimed and unreclaimed) will achieve the stage of natural climax and they will provide ecosystem functions more effectively in the future.

The communities of terrestrial macrofungi in different forest types in vicinities of Khanty-Mansiysk (middle taiga zone of West Siberia).

PubMed

Filippova, Nina; Bulyonkova, Tatiana

2017-01-01

The diversity of macrofungi in the vicinities of Khanty-Mansiysk (Yugra, Russia) was surveyed using a method of permanent sampling plots. Ten plots, each consisting of a number of micro-plots, were established in several different communities ranging from old-growth mixed taiga forest to its derivatives in cutting succession and bogged areas. For more complete registration of the mycota, plots were supplemented with random walking routes directly nearby. Survey results were subjected to various quantitative analyses which allowed not only to evaluate the diversity of fungi but also to obtain valuable information on occurrence, abundance and ecology of individual species as well as community structure and its dynamics in the course of ecological succession. The paper reports the results of the first year of observations. 460 species of terrestrial macrofungi revealed in a poorly explored area in middle taiga of West Siberia. The plot-based study revealed differences between communities of terrestrial macrofungi of old coniferous forests, their after-cutting secondary formations and bogged stages. The survey allowed to reveal records of 3 species listed in the Red Data Book of Russia and 9 species listed in the Red Data Book of Yugra.

2-undecanone and 2-tridecanone in field-grown onion.

PubMed

Antonious, George F

2013-01-01

A field study was conducted to investigate the impact of soil amendments on concentrations of two volatile organic compounds, 2-undecanone and 2-tridecanone, in onion bulbs. The soil in five plots was mixed with sewage sludge, five plots were mixed with yard waste compost, five plots were mixed with laying hen manure each at 15 t acre(-1), and five unamended plots that never received soil amendments were used for comparison purposes. Plots (n = 20) were planted with onion, Allium cepa L. var. Super Star-F1 bulbs. Gas chromatographic/mass spetrometric (GC/MS) analyses of mature onion bulbs crude extracts revealed the presence of two major fragment ions that correspond to 2-undecanone and 2-tridecanone. Soil amended with yard waste compost enhanced 2-undecanone and 2-tridecanone production by 31 and 59%, respectively. Soil amended with chicken manure enhanced 2-undecanone and 2-tridecanone production by 28 and 43%, respectively. Concentrations of 2-undecanone and 2-tridecanone were lowest in onion bulbs of plants grown in sewage sludge and unamended soil, respectively. The increased concentrations of 2-undecanone and 2-tridecanone in onion bulbs may provide a protective character against insect and spider mite attack in field grown onions.

Genetic analyses using GGE model and a mixed linear model approach, and stability analyses using AMMI bi-plot for late-maturity alpha-amylase activity in bread wheat genotypes.

PubMed

Rasul, Golam; Glover, Karl D; Krishnan, Padmanaban G; Wu, Jixiang; Berzonsky, William A; Fofana, Bourlaye

2017-06-01

Low falling number and discounting grain when it is downgraded in class are the consequences of excessive late-maturity α-amylase activity (LMAA) in bread wheat (Triticum aestivum L.). Grain expressing high LMAA produces poorer quality bread products. To effectively breed for low LMAA, it is necessary to understand what genes control it and how they are expressed, particularly when genotypes are grown in different environments. In this study, an International Collection (IC) of 18 spring wheat genotypes and another set of 15 spring wheat cultivars adapted to South Dakota (SD), USA were assessed to characterize the genetic component of LMAA over 5 and 13 environments, respectively. The data were analysed using a GGE model with a mixed linear model approach and stability analysis was presented using an AMMI bi-plot on R software. All estimated variance components and their proportions to the total phenotypic variance were highly significant for both sets of genotypes, which were validated by the AMMI model analysis. Broad-sense heritability for LMAA was higher in SD adapted cultivars (53%) compared to that in IC (49%). Significant genetic effects and stability analyses showed some genotypes, e.g. 'Lancer', 'Chester' and 'LoSprout' from IC, and 'Alsen', 'Traverse' and 'Forefront' from SD cultivars could be used as parents to develop new cultivars expressing low levels of LMAA. Stability analysis using an AMMI bi-plot revealed that 'Chester', 'Lancer' and 'Advance' were the most stable across environments, while in contrast, 'Kinsman', 'Lerma52' and 'Traverse' exhibited the lowest stability for LMAA across environments.

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe

USGS Publications Warehouse

Anderson, Kyle E.; Glenn, Nancy; Spaete, Lucas; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.

2017-01-01

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor’s line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner’s line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe.

PubMed

Anderson, Kyle E; Glenn, Nancy F; Spaete, Lucas P; Shinneman, Douglas J; Pilliod, David S; Arkle, Robert S; McIlroy, Susan K; Derryberry, DeWayne R

2017-10-23

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor's line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner's line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

Facilitating Student Understanding of Buffering by an Integration of Mathematics and Chemical Concepts

ERIC Educational Resources Information Center

Curtright, Robert; Emry, Randall; Heaton, Ruth M.; Markwell, John

2004-01-01

We describe a simple undergraduate exercise involving the titration of a weak acid by a strong base using a pH meter and a micropipette. Students then use their data and carry out graphical analyses with a spreadsheet. The analyses involve using mathematical concepts such as first-derivative and semi-log plots and provide an opportunity for…

Low-mass dielectrons in pp, p-Pb and Pb-Pb collisions measured by the ALICE Experiment

NASA Astrophysics Data System (ADS)

Vorobyev, Ivan

2018-02-01

Dielectrons produced in ultra-relativistic heavy-ion collisions at the LHC provide a unique probe of the system evolution as they are unperturbed by final-state interactions. The dielectron continuum is extremely rich in physics sources: on top of ordinary Dalitz and resonance decays of pseudoscalar and vector mesons, thermal black-body radiation is of particular interest as it carries information about the temperature of the hot and dense system created in such collisions. The dielectron invariant-mass distribution is furthermore sensitive to medium modifications of the spectral function of short-lived vector mesons that are linked to the potential restoration of chiral symmetry at high temperatures. Correlated electron pairs from semi-leptonic charm and beauty decays provide complementary information about the heavy-quark energy loss.

Dark Forces at KLOE/KLOE-2

NASA Astrophysics Data System (ADS)

Curciarello, Francesca

2014-05-01

Searches for dark matter particles in the GeV mass range and for dark forces are strongly motivated by the numerous striking astrophysical observations recently reported by many experiments. Flavor factories, like the Frascati Φ-factory DAΦNE, are particularly suited to search for the light gauge vector boson, called U boson, which is thought to mediate an unknown interaction between hypothetical dark matter particles. By using the KLOE detector, limits on U boson coupling factor ɛ2 of the order of 10-5 ÷ 10-7 have been set through the study of the ϕ Dalitz decay, the Higgsstrahlung process and Uγ events. New experiments with the upgraded KLOE detector and the increased luminosity of DAΦNE are expected to improve the already set upper limits by a factor of two or better.

Slopes of $pi$-meson spectra in the K $Yields$ 3$pi$ decays (in Russian)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kapustnikov, A.A.

1973-12-01

The strong violation ( approximates 35%) of the rule DELTA T = 1/2 on the Dalitz piot for the K yields 3 pi decays is considered in the framework of the nonlinear realization of the chiral SU(2) x SU(2) symmetry. The Lagrangian without derivatives obtained previously is used to describe the contact weak K pi interaction. It is postulated that the enhancement of effects related to the electromagnetic mass differences of pi and K mesons in the K yields 3 pi amplitudes is due to the PCAC modification: partial delta A = constant pi (1 - 2 alpha lambda /supmore » 2/ KK). At alpha = 0.8 the predictions of the model are shown to coincide with the experiment. (auth)« less

CP violation in multibody B decays from QCD factorization

NASA Astrophysics Data System (ADS)

Klein, Rebecca; Mannel, Thomas; Virto, Javier; Vos, K. Keri

2017-10-01

We test a data-driven approach based on QCD factorization for charmless three-body B-decays by confronting it to measurements of CP violation in B - → π - π + π -. While some of the needed non-perturbative objects can be directly extracted from data, some others can, so far, only be modelled. Although this approach is currently model dependent, we comment on the perspectives to reduce this model dependence. While our model naturally accommodates the gross features of the Dalitz distribution, it cannot quantitatively explain the details seen in the current experimental data on local CP asymmetries. We comment on possible refinements of our simple model and conclude by briefly discussing a possible extension of the model to large invariant masses, where large local CP asymmetries have been measured.

Mapping the above and belowground biomass in three landscapes in Cameroon, Rwanda and DRC: pilot cases in REDD+ pilot project.

NASA Astrophysics Data System (ADS)

Sufo Kankeu, R.

2017-12-01

A number of biomass/carbon maps have been recently produced using different approaches and despite their comparison there is still a gap. To fill this gap there is a need to provide accurate maps based on the field data on all types of land use and land cover. Based on the field data from plots established in three pilot projects around Virunga National park in Rwanda, Tri-national Sangha landscape in Cameroon and lac Télé-Lac Tumba landscape in DRC, this paper intend to analyse the relationship between land use change and biomass and present the variability through biomass/carbon maps. The above and belowground biomass was calculated from 95 nested plots of 20 meters radius. The value of biomass/carbon per plot were thus used to elaborate carbon maps of each study site. In the same the way the correlation between the land use and underground and above ground carbon stock were analysed using geographically weighted regression. These data have been joint with classified Spot 5 image and aggregated to come out will acceptable result. Results show that there is a strong relationship between land use in various project sites and the carbon stock related, the change of a forest cover directly impact on carbon stock/biomass.in the same way carbon map realized base on field data and IDW, Kriging or spline module show an idea on the carbon distribution but the maps are not accurate giving the distance between plots,

Effects of large-scale wildfire on ground foraging ants (Hymenoptera: Formicidae) in southern California

USGS Publications Warehouse

Matsuda, Tritia; Turschak, Greta; Brehme, Cheryl; Rochester, Carlton; Mitrovich, Milan; Fisher, Robert

2011-01-01

We investigated the effect of broad-scale wildfire on ground foraging ants within southern California. In October and November of 2003, two wildfires burned large portions of the wildlands within San Diego County. Between January 2005 and September 2006, we surveyed 63 plots across four sites to measure the effect of the fires on the ant assemblages present in four vegetation types: 1) coastal sage scrub, 2) chaparral, 3) grassland, and 4) woodland riparian. Thirty-six of the 63 plots were sampled before the fires between March 2001 and June 2003. Mixed model regression analyses, accounting for the burn history of each plot and our pre- and postfire sampling efforts, revealed that fire had a negative effect on ant species diversity. Multivariate analyses showed that ant community structure varied significantly among the four vegetation types, and only the ant assemblage associated with coastal sage scrub exhibited a significant difference between burned and unburned samples. The most notable change detected at the individual species level involved Messor andrei (Mayr), which increased from <1% of prefire coastal sage scrub ant samples to 32.1% in burned plots postfire. We theorize that M. andrei responded to the increase of bare ground and postfire seed production, leading to an increase in the detection rate for this species. Collectively, our results suggest that wildfires can have short-term impacts on the diversity and community structure of ground foraging ants in coastal sage scrub. We discuss these findings in relation to management implications and directions for future research.

Effects of soil management techniques on soil water erosion in apricot orchards.

PubMed

Keesstra, Saskia; Pereira, Paulo; Novara, Agata; Brevik, Eric C; Azorin-Molina, Cesar; Parras-Alcántara, Luis; Jordán, Antonio; Cerdà, Artemi

2016-05-01

Soil erosion is extreme in Mediterranean orchards due to management impact, high rainfall intensities, steep slopes and erodible parent material. Vall d'Albaida is a traditional fruit production area which, due to the Mediterranean climate and marly soils, produces sweet fruits. However, these highly productive soils are left bare under the prevailing land management and marly soils are vulnerable to soil water erosion when left bare. In this paper we study the impact of different agricultural land management strategies on soil properties (bulk density, soil organic matter, soil moisture), soil water erosion and runoff, by means of simulated rainfall experiments and soil analyses. Three representative land managements (tillage/herbicide/covered with vegetation) were selected, where 20 paired plots (60 plots) were established to determine soil losses and runoff. The simulated rainfall was carried out at 55mmh(-1) in the summer of 2013 (<8% soil moisture) for one hour on 0.25m(2) circular plots. The results showed that vegetation cover, soil moisture and organic matter were significantly higher in covered plots than in tilled and herbicide treated plots. However, runoff coefficient, total runoff, sediment yield and soil erosion were significantly higher in herbicide treated plots compared to the others. Runoff sediment concentration was significantly higher in tilled plots. The lowest values were identified in covered plots. Overall, tillage, but especially herbicide treatment, decreased vegetation cover, soil moisture, soil organic matter, and increased bulk density, runoff coefficient, total runoff, sediment yield and soil erosion. Soil erosion was extremely high in herbicide plots with 0.91Mgha(-1)h(-1) of soil lost; in the tilled fields erosion rates were lower with 0.51Mgha(-1)h(-1). Covered soil showed an erosion rate of 0.02Mgha(-1)h(-1). These results showed that agricultural management influenced water and sediment dynamics and that tillage and herbicide treatment should be avoided. Copyright © 2016 Elsevier B.V. All rights reserved.

Rising water levels and the future of southeastern Louisiana swamp forests

USGS Publications Warehouse

Conner, W.H.; Brody, M.

1989-01-01

An important factor contributing to the deterioration of wetland forests in Louisiana is increasing water levels resulting from eustatic sea-level rise and subsidence. Analyses of long-term water level records from the Barataria and Verret watersheds in southeastern Louisiana indicate an apparent sea level rise of about 1-m per century, mainly the result of subsidence. Permanent study plots were established in cypress-tupelo stands in these two watersheds. The tree, water level, and subsidence data collected in these plots were entered into the U.S. Fish and Wildlife Servicea??s FORFLO bottomland hardwood succession model to determine the long-term effects of rising water levels on forest structure. Analyses were made of 50a??100 years for a cypress-tupelo swamp site in each basin and a bottomland hardwood ridge in the Verret watershed. As flooding increased, less flood tolerant species were replaced by cypress-tupelo within 50 years. As flooding continued, the sites start to become nonforested. From the test analyses, the FORFLO model seems to be an excellent tool for predicting long-term changes in the swamp habitat of south Louisiana.

Trends in NDVI and tundra community composition in the Arctic of NE Alaska between 1984 and 2009

Treesearch

Robert R. Pattison; Janet C. Jorgenson; Martha K. Raynolds; Jeffery M. Welker

2015-01-01

As Arctic ecosystems experience increases in surface air temperatures, plot-level analyses of tundra vegetation composition suggest that there are important changes occurring in tundra communities that are typified by increases in shrubs and declines in non-vascular species. At the same time analyses of NDVI indicate that the Arctic tundra is greening. Few studies have...

SPRUCE Pretreatment Plant Tissue Analyses, 2009 through 2013

DOE Data Explorer

Phillips, J. R. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Brice, D. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Hanson, P. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Childs, J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Iversen, C. M. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Norby, R. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A; Warren, J. M. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A

2009-12-01

This data set reports the results of elemental analyses of foliar and stem/woody twig plant tissues collected at the SPRUCE site in 2009, 2012, and 2013. Samples were obtained at various locations around the S1 Bog and from within the developing experimental treatment plots. These are pretreatment vegetation samples, collected prior to initiation of the SPRUCE experiment heating and elevated CO2 treatments.

Influence of canopy traits on spatio-temporal variability of throughfall in Mediterranean Downy oak and Scots pine stands

NASA Astrophysics Data System (ADS)

Llorens, Pilar; Garcia-Estringana, Pablo; Latron, Jérôme; Molina, Antonio J.; Gallart, Francesc

2014-05-01

The spatio-temporal variability of throughfall is the result of the interaction of biotic factors, related to the canopy traits, and abiotic factors, linked to the meteorological conditions. This variability may lead to significant differences in the volume of water and solutes that reach the ground in each location, and beyond in the hydrological and biogeochemical dynamics of forest soils. Two forest stands in Mediterranean climatic conditions were studied to analyse the role of biotic and abiotic factors in the temporal and spatial redistribution of throughfall. The monitored stands are a Downy oak forest (Quercus pubescens) and a Scots pine forest (Pinus sylvestris), both located in the Vallcebre research catchments (NE Spain, 42º 12'N, 1º 49'E). The study plots are representative of Mediterranean mountain areas with spontaneous afforestation by Scots pine as a consequence of the abandonment of agricultural terraces, formerly covered by Downy oaks. The monitoring design of each plot consisted of a set of 20 automatic rain recorders and 40 automatic soil moisture probes located below the canopy. 100 hemispheric photographs of the canopy were used to place the instruments at representative locations (in terms of canopy cover) within the plot. Bulk rainfall, stemflow and meteorological conditions above the forest cover were also automatically recorded. Canopy cover as well as biometric characteristics of the plots were also regularly measured. The results indicate a temporal persistence of throughfall in both stands, as observed elsewhere. However, for the oak plot the seasonal evolution of canopy traits added additional variability, with higher variability in summer and different locations of wet and dry spots depending on the season. Furthermore, this work investigates the influence of canopy structure on the spatial variability of throughfall by analysing a large set of forest parameters, from main canopy traits to detailed leaves and wood characteristics. The analysis includes the consideration of the interaction of main abiotic factors with canopy traits.

Histograms showing variations in oil yield, water yield, and specific gravity of oil from Fischer assay analyses of oil-shale drill cores and cuttings from the Piceance Basin, northwestern Colorado

USGS Publications Warehouse

Dietrich, John D.; Brownfield, Michael E.; Johnson, Ronald C.; Mercier, Tracey J.

2014-01-01

Recent studies indicate that the Piceance Basin in northwestern Colorado contains over 1.5 trillion barrels of oil in place, making the basin the largest known oil-shale deposit in the world. Previously published histograms display oil-yield variations with depth and widely correlate rich and lean oil-shale beds and zones throughout the basin. Histograms in this report display oil-yield data plotted alongside either water-yield or oil specific-gravity data. Fischer assay analyses of core and cutting samples collected from exploration drill holes penetrating the Eocene Green River Formation in the Piceance Basin can aid in determining the origins of those deposits, as well as estimating the amount of organic matter, halite, nahcolite, and water-bearing minerals. This report focuses only on the oil yield plotted against water yield and oil specific gravity.

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel.

PubMed

Grapov, Dmitry; Newman, John W

2012-09-01

Interactive modules for Data Exploration and Visualization (imDEV) is a Microsoft Excel spreadsheet embedded application providing an integrated environment for the analysis of omics data through a user-friendly interface. Individual modules enables interactive and dynamic analyses of large data by interfacing R's multivariate statistics and highly customizable visualizations with the spreadsheet environment, aiding robust inferences and generating information-rich data visualizations. This tool provides access to multiple comparisons with false discovery correction, hierarchical clustering, principal and independent component analyses, partial least squares regression and discriminant analysis, through an intuitive interface for creating high-quality two- and a three-dimensional visualizations including scatter plot matrices, distribution plots, dendrograms, heat maps, biplots, trellis biplots and correlation networks. Freely available for download at http://sourceforge.net/projects/imdev/. Implemented in R and VBA and supported by Microsoft Excel (2003, 2007 and 2010).

3-D thermal analysis using finite difference technique with finite element model for improved design of components of rocket engine turbomachines for Space Shuttle Main Engine SSME

NASA Technical Reports Server (NTRS)

Sohn, Kiho D.; Ip, Shek-Se P.

1988-01-01

Three-dimensional finite element models were generated and transferred into three-dimensional finite difference models to perform transient thermal analyses for the SSME high pressure fuel turbopump's first stage nozzles and rotor blades. STANCOOL was chosen to calculate the heat transfer characteristics (HTCs) around the airfoils, and endwall effects were included at the intersections of the airfoils and platforms for the steady-state boundary conditions. Free and forced convection due to rotation effects were also considered in hollow cores. Transient HTCs were calculated by taking ratios of the steady-state values based on the flow rates and fluid properties calculated at each time slice. Results are presented for both transient plots and three-dimensional color contour isotherm plots; they were also converted into universal files to be used for FEM stress analyses.

Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach

PubMed Central

Erickson, David L.; Jones, Frank A.; Swenson, Nathan G.; Pei, Nancai; Bourg, Norman A.; Chen, Wenna; Davies, Stuart J.; Ge, Xue-jun; Hao, Zhanqing; Howe, Robert W.; Huang, Chun-Lin; Larson, Andrew J.; Lum, Shawn K. Y.; Lutz, James A.; Ma, Keping; Meegaskumbura, Madhava; Mi, Xiangcheng; Parker, John D.; Fang-Sun, I.; Wright, S. Joseph; Wolf, Amy T.; Ye, W.; Xing, Dingliang; Zimmerman, Jess K.; Kress, W. John

2014-01-01

Forest dynamics plots, which now span longitudes, latitudes, and habitat types across the globe, offer unparalleled insights into the ecological and evolutionary processes that determine how species are assembled into communities. Understanding phylogenetic relationships among species in a community has become an important component of assessing assembly processes. However, the application of evolutionary information to questions in community ecology has been limited in large part by the lack of accurate estimates of phylogenetic relationships among individual species found within communities, and is particularly limiting in comparisons between communities. Therefore, streamlining and maximizing the information content of these community phylogenies is a priority. To test the viability and advantage of a multi-community phylogeny, we constructed a multi-plot mega-phylogeny of 1347 species of trees across 15 forest dynamics plots in the ForestGEO network using DNA barcode sequence data (rbcL, matK, and psbA-trnH) and compared community phylogenies for each individual plot with respect to support for topology and branch lengths, which affect evolutionary inference of community processes. The levels of taxonomic differentiation across the phylogeny were examined by quantifying the frequency of resolved nodes throughout. In addition, three phylogenetic distance (PD) metrics that are commonly used to infer assembly processes were estimated for each plot [PD, Mean Phylogenetic Distance (MPD), and Mean Nearest Taxon Distance (MNTD)]. Lastly, we examine the partitioning of phylogenetic diversity among community plots through quantification of inter-community MPD and MNTD. Overall, evolutionary relationships were highly resolved across the DNA barcode-based mega-phylogeny, and phylogenetic resolution for each community plot was improved when estimated within the context of the mega-phylogeny. Likewise, when compared with phylogenies for individual plots, estimates of phylogenetic diversity in the mega-phylogeny were more consistent, thereby removing a potential source of bias at the plot-level, and demonstrating the value of assessing phylogenetic relationships simultaneously within a mega-phylogeny. An unexpected result of the comparisons among plots based on the mega-phylogeny was that the communities in the ForestGEO plots in general appear to be assemblages of more closely related species than expected by chance, and that differentiation among communities is very low, suggesting deep floristic connections among communities and new avenues for future analyses in community ecology. PMID:25414723

The communities of terrestrial macrofungi in different forest types in vicinities of Khanty-Mansiysk (middle taiga zone of West Siberia)

PubMed Central

Bulyonkova, Tatiana

2017-01-01

Abstract Background The diversity of macrofungi in the vicinities of Khanty-Mansiysk (Yugra, Russia) was surveyed using a method of permanent sampling plots. Ten plots, each consisting of a number of micro-plots, were established in several different communities ranging from old-growth mixed taiga forest to its derivatives in cutting succession and bogged areas. For more complete registration of the mycota, plots were supplemented with random walking routes directly nearby. Survey results were subjected to various quantitative analyses which allowed not only to evaluate the diversity of fungi but also to obtain valuable information on occurrence, abundance and ecology of individual species as well as community structure and its dynamics in the course of ecological succession. The paper reports the results of the first year of observations. New information 460 species of terrestrial macrofungi revealed in a poorly explored area in middle taiga of West Siberia. The plot-based study revealed differences between communities of terrestrial macrofungi of old coniferous forests, their after-cutting secondary formations and bogged stages. The survey allowed to reveal records of 3 species listed in the Red Data Book of Russia and 9 species listed in the Red Data Book of Yugra. PMID:29362551

MDplot: Visualise Molecular Dynamics.

PubMed

Margreitter, Christian; Oostenbrink, Chris

2017-05-10

The MDplot package provides plotting functions to allow for automated visualisation of molecular dynamics simulation output. It is especially useful in cases where the plot generation is rather tedious due to complex file formats or when a large number of plots are generated. The graphs that are supported range from those which are standard, such as RMsD/RMsF (root-mean-square deviation and root-mean-square fluctuation, respectively) to less standard, such as thermodynamic integration analysis and hydrogen bond monitoring over time. All told, they address many commonly used analyses. In this article, we set out the MDplot package's functions, give examples of the function calls, and show the associated plots. Plotting and data parsing is separated in all cases, i.e. the respective functions can be used independently. Thus, data manipulation and the integration of additional file formats is fairly easy. Currently, the loading functions support GROMOS, GROMACS, and AMBER file formats. Moreover, we also provide a Bash interface that allows simple embedding of MDplot into Bash scripts as the final analysis step. The package can be obtained in the latest major version from CRAN (https://cran.r-project.org/package=MDplot) or in the most recent version from the project's GitHub page at https://github.com/MDplot/MDplot, where feedback is also most welcome. MDplot is published under the GPL-3 license.

Agriculture in an area impacted by past uranium mining activities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carvalho, F. P.; Oliveira, J. M.; Neves, O.

2007-07-01

The shallow aquifer near the old Cunha Baixa uranium mine (Viseu, Portugal) was contaminated by acid mine drainage. Concentration of radionuclides in water from irrigation wells and in the topsoil layer of the agriculture fields nearby display enhanced concentrations of uranium, radium and polonium. Two types of agriculture land in this area were selected, one with enhanced and another with low uranium concentrations, for controlled growth of lettuce and potatoes. Plants were grown in replicate portions of land (two plots) in each soil type and were periodically irrigated with water from wells. In each soil, one plot was irrigated withmore » water containing low concentration of dissolved uranium and the other plot with water containing enhanced concentration of dissolved uranium. At the end of the growth season, plants were harvested and analysed, along with soil and irrigation water samples. Results show the accumulation of radionuclides in edible parts of plants, specially in the field plots with higher radionuclide concentrations in soil. Radionuclides in irrigation water contributed less to the radioactivity accumulated in plants than radionuclides from soils. (authors)« less

The diagnostic plot analysis of artesian aquifers with case studies in Table Mountain Group of South Africa

NASA Astrophysics Data System (ADS)

Sun, Xiaobin; Xu, Yongxin; Lin, Lixiang

2015-05-01

Parameter estimates of artesian aquifers where piezometric head is above ground level are largely made through free-flowing and recovery tests. The straight-line method proposed by Jacob-Lohman is often used for interpretation of flow rate measured at flowing artesian boreholes. However, the approach fails to interpret the free-flowing test data from two artesian boreholes in the fractured-rock aquifer in Table Mountain Group (TMG) of South Africa. The diagnostic plot method using the reciprocal rate derivative is adapted to evaluate the artesian aquifer properties. The variation of the derivative helps not only identify flow regimes and discern the boundary conditions, but also facilitates conceptualization of the aquifer system and selection of an appropriate model for data interpretation later on. Test data from two free-flowing tests conducted in different sites in TMG are analysed using the diagnostic plot method. Based on the results, conceptual models and appropriate approaches are developed to evaluate the aquifer properties. The advantages and limitations of using the diagnostic plot method on free-flowing test data are discussed.

Accumulating pollutants in conifer needles on an Atlantic island - a case study with Pinus canariensis on Tenerife, Canary Islands.

PubMed

Tausz, Michael; Trummer, Walter; Goessler, Walter; Wonisch, Astrid; Grill, Dieter; Naumann, Simone; Jiménez, Maria Soledad; Morales, Domingo

2005-08-01

Concentrations of potential pollutant elements Na, Cl, and S were investigated in needles of Pinus canariensis grown at 55 field plots in Tenerife. Microelement concentrations (including heavy metals) were measured at a subset of 18 plots. Na and Cl concentrations were high at low elevations (up to 8 mg g(-1) Cl and 5.5 mg g(-1) Na). Na/Cl ratio close to standard seawater indicated sea spray influence up to 1200 m a.s.l. Only at few plots, sulphur concentrations indicated possible pollutant impact. Cluster and correlation analyses identified a related group of V, As, Cr, Fe, Mo, Ni, Cu, Pb, and Al, possibly related to traffic exhaust aggregated with soil particles. Mainly north-eastern, lower elevated plots were exposed to those immissions, but metal concentrations were generally low compared to data from other studies. In conclusion, seawater and soil particles explained most of the element distribution pattern in pine needles in Tenerife, but strong indications for some effect of local sources of air pollutants were detected.

Graphic report of the results from propensity score method analyses.

PubMed

Shrier, Ian; Pang, Menglan; Platt, Robert W

2017-08-01

To increase transparency in studies reporting propensity scores by using graphical methods that clearly illustrate (1) the number of participant exclusions that occur as a consequence of the analytic strategy and (2) whether treatment effects are constant or heterogeneous across propensity scores. We applied graphical methods to a real-world pharmacoepidemiologic study that evaluated the effect of initiating statin medication on the 1-year all-cause mortality post-myocardial infarction. We propose graphical methods to show the consequences of trimming and matching on the exclusion of participants from the analysis. We also propose the use of meta-analytical forest plots to show the magnitude of effect heterogeneity. A density plot with vertical lines demonstrated the proportion of subjects excluded because of trimming. A frequency plot with horizontal lines demonstrated the proportion of subjects excluded because of matching. An augmented forest plot illustrates the amount of effect heterogeneity present in the data. Our proposed techniques present additional and useful information that helps readers understand the sample that is analyzed with propensity score methods and whether effect heterogeneity is present. Copyright © 2017 Elsevier Inc. All rights reserved.

Earth science research

NASA Technical Reports Server (NTRS)

Botkin, Daniel B.

1987-01-01

The analysis of ground-truth data from the boreal forest plots in the Superior National Forest, Minnesota, was completed. Development of statistical methods was completed for dimension analysis (equations to estimate the biomass of trees from measurements of diameter and height). The dimension-analysis equations were applied to the data obtained from ground-truth plots, to estimate the biomass. Classification and analyses of remote sensing images of the Superior National Forest were done as a test of the technique to determine forest biomass and ecological state by remote sensing. Data was archived on diskette and tape and transferred to UCSB to be used in subsequent research.

Seed: a user-friendly tool for exploring and visualizing microbial community data.

PubMed

Beck, Daniel; Dennis, Christopher; Foster, James A

2015-02-15

In this article we present Simple Exploration of Ecological Data (Seed), a data exploration tool for microbial communities. Seed is written in R using the Shiny library. This provides access to powerful R-based functions and libraries through a simple user interface. Seed allows users to explore ecological datasets using principal coordinate analyses, scatter plots, bar plots, hierarchal clustering and heatmaps. Seed is open source and available at https://github.com/danlbek/Seed. danlbek@gmail.com Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press.

Seasonal sediment dynamics shape temperate bedrock reef communities

USGS Publications Warehouse

Figurski, Jared D.; Freiwald, Jan; Lonhart, Steve I.; Storlazzi, Curt

2016-01-01

Mobilized seafloor sediment can impact benthic reef communities through burial, scour, and turbidity. These processes are ubiquitous in coastal oceans and, through their influence on the survival, fitness, and interactions of species, can alter the structure and function of benthic communities. In northern Monterey Bay, California, USA, as much as 30% of the seafloor is buried or exposed seasonally, making this an ideal location to test how subtidal temperate rocky reef communities vary in the presence and absence of chronic sediment-based disturbances. Designated dynamic plots were naturally inundated by sediment in summer (50 to 100% cover) and swept clean in winter, whereas designated stable plots remained free of sediment during our study. Multivariate analyses indicated significant differences in the structure of sessile and mobile communities between dynamic and stable reef habitats. For sessile species, community structure in disturbed plots was less variable in space and time than in stable plots due to the maintenance of an early successional state. In contrast, community structure of mobile species varied more in disturbed plots than in stable plots, reflecting how mobile species distribute in response to sediment dynamics. Some species were found only in these disturbed areas, suggesting that the spatial mosaic of disturbance could increase regional diversity. We discuss how the relative ability of species to tolerate disturbance at different life history stages and their ability to colonize habitat translate into community-level differences among habitats, and how this response varies between mobile and sessile communities.

Partitioning soil respiration: examining the artifacts of the trenching method.

NASA Astrophysics Data System (ADS)

Savage, K. E.; Davidson, E. A.; Finzi, A.; Giasson, M. A.; Wehr, R. A.

2014-12-01

Soil respiration (Rs) is a combination of autotrophic (Ra) and heterotrophic respiration (Rh). Several methods have been developed to tease out the components of Rs, such as isotopic analyses, and removing Ra input through tree girdling and root exclusion experiments. Trenching involves severing the rooting system surrounding a plot to remove the Ra component within the plot. This method has some potential limitations. Reduced water uptake in trenched plots could change soil water content, which is one of the environmental controllers of Rs in many ecosystems. Eliminating root inputs could reduce heterotrophic decomposition of SOM via lack of priming. On the other hand, the severed dead roots may temporarily increase available carbon substrate for Rh. At the Harvard Forest, MA, we used the trenching method to partition Rs into its components Ra and Rh. Pre-trenched Rs was measured from spring to fall of 2012. In late fall of 2012, a trench was excavated to 1m depth around a 5x5m area, severing all roots. Plastic tarp was placed along the trench walls and then backfilled. Four automated Rs chambers were placed in the trenched plot and four in an un-trenched plot. Respiration was measured hourly for each chamber along with soil temperature and moisture from spring through fall of 2013 and 2014. Eighty root decomposition bags were placed in the organic soil horizon of the trenched (40) and un-trenched (40) plots at the time of trenching in 2012 and measured in 2013 and 2014. These data are being used to estimate the size and duration of any artifact due to root death. As expected, Rs was lower in the trenched plot (Rh only) than in the un-trenched plot (Rh + Ra) in 2013, but the reverse was unexpectedly observed during a period of low precipitation in 2014. High rates of ET combined with below-average precipitation dried the un-trenched plot to a point where Rh was inhibited, whereas less ET allowed the un-trenched plots to remain measurably wetter.

DMPP-added nitrogen fertilizer affects soil N2O emission and microbial activity in Southern Italy

NASA Astrophysics Data System (ADS)

Vitale, Luca; De Marco, Anna; Maglione, Giuseppe; Polimeno, Franca; Di Tommasi, Paul; Magliulo, Vincenzo

2014-05-01

Arable sites contributes to global N2O emission due to massive utilization of nitrogen fertilizers. N2O derives from the biological processes such as nitrification and denitrification influenced by soil nitrogen availability. The use of nitrogen fertilizers added with nitrification inhibitors represents one among the proposed strategy to reduce soil N2O emission form arable sites. The aim of this work was to evaluate the effects of 3,4-dimethylphyrazole phosphate (DMPP), a nitrification inhibitor, on N2O emission and microbial activity of a soil cropped to potato in Southern Italy. The experiment was a randomized block design with two treatments applied and three replicates: control (C) and DMPP (Entec®, K+S Nitrogen) plots, both supplied with the same amount of ammonium nitrate. The nitrogen fertilizer was supplied in three events: at 0 Day After Sowing (DAS; 100 kg N ha-1), at 57 DAS (30 kg N ha-1), and at 71 DAS (30 kg N ha-1). Soil N2O emission was monitored by both dynamic and static chambers. Static chambers were located both on hills and furrows whereas dynamic chambers were located on furrows. Air samples were collected from chambers at different times and analysed by a gas chromatograph (SRI 8610C, Gas Chromatograph). Fluxes were estimated as a linear interpolation of N2O changes over a 30 min time. Microbial biomass and basal respiration were determined as CO2 evolution, analysed by means of an IRGA (Li6200, Licor), on 2 g of fresh soil over a 4h incubation time. Microbial biomass was determined by Substrate Induced Respiration method. Data show no statistical differences in N2O fluxes measured with either dynamic chambers between C and DMPP plots in studied period. However, after the first fertilization event, when the fertilizer was applied as 100 kg N ha-1, the average N2O fluxes measured with static chambers were higher in DMPP plots compared to C plots. In the same period, the microbial biomass significantly decreased in DMPP plots as compared to C plots, whereas an opposite trend for basal respiration was observed, thus evidencing a stressful condition for nitrifying microbial population. After 57 and 71 DAS, when fertilizer was applied as 30 kg N ha-1, the microbial biomass was similar between C and DMPP plots, whereas basal respiration resulted statistically lower in DMPP plots than C plots. During these periods, average DMPP N2O fluxes were also comparable or lower. In conclusion, our data evidence a stressful condition for soil microbes and in particular for nitrifiers when a higher DMPP quantity is supplied. On the contrary, when lower quantities of DMPP-added fertilizers are supplied (e.s. 30 kg N ha-1) effectiveness of DMPP in reducing soil N2O emission is guaranteed by reducing the nitrifiers activity without negatively affecting their growth.

Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta).

PubMed

Devos, Nicolas; Szövényi, Péter; Weston, David J; Rothfels, Carl J; Johnson, Matthew G; Shaw, A Jonathan

2016-07-01

The goal of this research was to investigate whether there has been a whole-genome duplication (WGD) in the ancestry of Sphagnum (peatmoss) or the class Sphagnopsida, and to determine if the timing of any such duplication(s) and patterns of paralog retention could help explain the rapid radiation and current ecological dominance of peatmosses. RNA sequencing (RNA-seq) data were generated for nine taxa in Sphagnopsida (Bryophyta). Analyses of frequency plots for synonymous substitutions per synonymous site (Ks ) between paralogous gene pairs and reconciliation of 578 gene trees were conducted to assess evidence of large-scale or genome-wide duplication events in each transcriptome. Both Ks frequency plots and gene tree-based analyses indicate multiple duplication events in the history of the Sphagnopsida. The most recent WGD event predates divergence of Sphagnum from the two other genera of Sphagnopsida. Duplicate retention is highly variable across species, which might be best explained by local adaptation. Our analyses indicate that the last WGD could have been an important factor underlying the diversification of peatmosses and facilitated their rise to ecological dominance in peatlands. The timing of the duplication events and their significance in the evolutionary history of peat mosses are discussed. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Runoff and soil erosion of field plots in a subtropical mountainous region of China

NASA Astrophysics Data System (ADS)

Fang, N. F.; Wang, L.; Shi, Z. H.

2017-09-01

Anthropogenic pressure coupled with strong precipitation events and a mountainous landscape have led to serious soil erosion and associated problems in the subtropical climate zone of China. This study analyzes 1576 rainfall-runoff-soil loss events at 36 experimental plots (a total of 148 plot-years of data) under a wide range of conditions in subtropical mountainous areas of China where slope farming is commonly practiced. The plots, which have standardized dimensions, represent five common types of land use and have four different slopes. Event-based analyses show that almost half of the total rainfall caused soil erosion in the study area. The dominant factor controlling the runoff coefficient is the slope gradient rather than the land use type. The maximum soil lossfor crop plots under steep tillage (35°) is 5004 t km-2 for a single event. Among the common local crops, the average soil loss values increase in the following order: buckwheat < mung bean < sesame. Among the most widespread grasses, orchards and crops, the soil loss increase in the following order: red clover < nectarine < orange < maize. A large proportion of the soil loss is caused by a small number of extreme events. The annual average soil loss of the 44 plots ranges from 19 to 4090 t km-2 year-1. The annual soil loss of plots of different land use types decrease in the following order: bare land (1533 t km-2 year-1) > cropland (1179 t km-2 year-1) > terraced cropland (1083 t km-2 year-1) > orchard land (1020 t km-2 year-1) > grassland (762 t km-2 year-1) > terraced orchard land (297 t km-2 year-1) > forest and grassland (281 t km-2 year-1).

A new improved graphical and quantitative method for detecting bias in meta-analysis.

PubMed

Furuya-Kanamori, Luis; Barendregt, Jan J; Doi, Suhail A R

2018-04-04

Detection of publication and related biases remains suboptimal and threatens the validity and interpretation of meta-analytical findings. When bias is present, it usually differentially affects small and large studies manifesting as an association between precision and effect size and therefore visual asymmetry of conventional funnel plots. This asymmetry can be quantified and Egger's regression is, by far, the most widely used statistical measure for quantifying funnel plot asymmetry. However, concerns have been raised about both the visual appearance of funnel plots and the sensitivity of Egger's regression to detect such asymmetry, particularly when the number of studies is small. In this article, we propose a new graphical method, the Doi plot, to visualize asymmetry and also a new measure, the LFK index, to detect and quantify asymmetry of study effects in Doi plots. We demonstrate that the visual representation of asymmetry was better for the Doi plot when compared with the funnel plot. We also show that the diagnostic accuracy of the LFK index in discriminating between asymmetry due to simulated publication bias versus chance or no asymmetry was also better with the LFK index which had areas under the receiver operating characteristic curve of 0.74-0.88 with simulations of meta-analyses with five, 10, 15, and 20 studies. The Egger's regression result had lower areas under the receiver operating characteristic curve values of 0.58-0.75 across the same simulations. The LFK index also had a higher sensitivity (71.3-72.1%) than the Egger's regression result (18.5-43.0%). We conclude that the methods proposed in this article can markedly improve the ability of researchers to detect bias in meta-analysis.

Poincaré plot indexes of heart rate variability detect dynamic autonomic modulation during general anesthesia induction.

PubMed

Hsu, Che-Hao; Tsai, Ming-Ya; Huang, Go-Shine; Lin, Tso-Chou; Chen, Kuen-Pao; Ho, Shung-Tai; Shyu, Liang-Yu; Li, Chi-Yuan

2012-03-01

Beat-to-beat heart rate variability (HRV) is caused by the fluctuating balance of sympathetic and parasympathetic tone. The Poincaré plot has been used to evaluate HRV. In this study, we validate that this new method may qualitatively and quantitatively assess the sympathovagal fluctuation in patients during induction of anesthesia with sevoflurane. Twenty-eight young patients were allocated for the study. The patients received a tilt test and on the next day they sustained anesthesia induced with inhaled anesthetics. Electrocardiography signals from the patients were relayed to an analogue-digital converter. The Poincaré plot is quantified by measuring SD1, SD2, and SD1/SD2. Power spectral analyses were performed and LF, HF and HF/LF were calculated. The LF power and the SD2 of the Poincaré plot increased while subjects were tilt-up from the supine position. Additionally, a significant correlation were found between LF and SD2, HF and SD1 (p < 0.05), and LF/HF and SD2/SD1 (p < 0.01). Sevoflurane inhalation for 10 minutes had no effect on heart rate, but diminished LF, total power and SD1, SD2 of the Poincaré plot respectively. However, the LF, SD2 and LF/HF increased; the HF, SD1 and SD1/SD2 ratio decreased after intubation stimulation. Poincaré plot and power spectral analysis of HRV during tilt test and sevoflurane induction significantly correlate. Poincaré plot analysis is easier and more sensitive at evaluating the sympathovagal balance and observing the beat-to-beat HRV. Copyright © 2012. Published by Elsevier B.V.

Parallel line analysis: multifunctional software for the biomedical sciences

NASA Technical Reports Server (NTRS)

Swank, P. R.; Lewis, M. L.; Damron, K. L.; Morrison, D. R.

1990-01-01

An easy to use, interactive FORTRAN program for analyzing the results of parallel line assays is described. The program is menu driven and consists of five major components: data entry, data editing, manual analysis, manual plotting, and automatic analysis and plotting. Data can be entered from the terminal or from previously created data files. The data editing portion of the program is used to inspect and modify data and to statistically identify outliers. The manual analysis component is used to test the assumptions necessary for parallel line assays using analysis of covariance techniques and to determine potency ratios with confidence limits. The manual plotting component provides a graphic display of the data on the terminal screen or on a standard line printer. The automatic portion runs through multiple analyses without operator input. Data may be saved in a special file to expedite input at a future time.

Fipronil: Toxicity to subterranean termites and dissipation in soils

Treesearch

J. E. Mulrooney; T. L. Wagner; P. D. Gerard

2009-01-01

Fipronil (Termidor 80 WG) was applied to covered and exposed plots at one secondary and four primary USDA Forest Service termiticide test sites in the U.S. Residue analyses and bioassays of soil samples were conducted over 5 y.

Post-harvest field manipulations to conserve waste rice for waterfowl

USGS Publications Warehouse

Stafford, J.D.; Kaminski, R.M.; Reinecke, K.J.; Kurtz, M.E.; Manley, S.W.

2005-01-01

Rice seeds escaping collection by combines during harvest (hereafter, waste rice) provide quality forage for migrating and wintering waterfowl in the Lower Mississippi Alluvial Valley (MAV) and other rice growing regions in the United States. Recent sample surveys across the MAV have revealed abundance of waste rice in fields declined an average of 71% between harvest and late autumn. Thus, we evaluated the ability of common post-harvest, field-management practices to conserve waste rice for waterfowl until early winter via controlled experiments in Mississippi rice test plots in 2001 and 2003 and analyses of data from MAV-wide surveys of waste rice in rice production fields in 2000-2002. Our experiments indicated test plots with burned rice stubble that were not flooded during autumn contained more waste rice than other treatments in 2001 (P?0.10). Waste-rice abundance in test plots did not differ among postharvest treatments in 2003 (P = 0.97). Our analyses of data from the MAV sample surveys did not detect differences in abundance of waste rice among fields burned, rolled, disked, or left in standing stubble post-harvest (P?0.04; Bonferroni corrected critical ( a= 0.017). Because results from test-plot experiments were inconclusive, we based our primary inference regarding best post-harvest treatments on patterns of rice abundance identified from the MAV surveys and previously documented environmental and agronomic benefits of managing harvested rice fields for wintering waterfowl. Therefore, we recommend leaving standing stubble in rice fields after harvest as a preliminary beneficial management practice. We suggest future research evaluate potential of postharvest practices to conserve waste rice for waterfowl and reduce straw in production rice fields managed for wintering waterfowl throughout the MAV.

Summarizing the incidence of adverse events using volcano plots and time intervals.

PubMed

Zink, Richard C; Wolfinger, Russell D; Mann, Geoffrey

2013-01-01

Adverse event incidence analyses are a critical component for describing the safety profile of any new intervention. The results typically are presented in lengthy summary tables. For therapeutic areas where patients have frequent adverse events, analysis and interpretation are made more difficult by the sheer number and variety of events that occur. Understanding the risk in these instances becomes even more crucial. We describe a space-saving graphical summary that overcomes the limitations of traditional presentations of adverse events and improves interpretability of the safety profile. We present incidence analyses of adverse events graphically using volcano plots to highlight treatment differences. Data from a clinical trial of patients experiencing an aneurysmal subarachnoid hemorrhage are used for illustration. Adjustments for multiplicity are illustrated. Color is used to indicate the treatment with higher incidence; bubble size represents the total number of events that occur in the treatment arms combined. Adjustments for multiple comparisons are displayed in a manner to indicate clearly those events for which the difference between treatment arms is statistically significant. Furthermore, adverse events can be displayed by time intervals, with multiple volcano plots or animation to appreciate changes in adverse event risk over time. Such presentations can emphasize early differences across treatments that may resolve later or highlight events for which treatment differences may become more substantial with longer follow-up. Treatment arms are compared in a pairwise fashion. Volcano plots are space-saving tools that emphasize important differences between the adverse event profiles of two treatment arms. They can incorporate multiplicity adjustments in a manner that is straightforward to interpret and, by using time intervals, can illustrate how adverse event risk changes over the course of a clinical trial.

Vegetation composition and structure of southern coastal plain pine forests: An ecological comparison

USGS Publications Warehouse

Hedman, C.W.; Grace, S.L.; King, S.E.

2000-01-01

Longleaf pine (Pinus palustris) ecosystems are characterized by a diverse community of native groundcover species. Critics of plantation forestry claim that loblolly (Pinus taeda) and slash pine (Pinus elliottii) forests are devoid of native groundcover due to associated management practices. As a result of these practices, some believe that ecosystem functions characteristic of longleaf pine are lost under loblolly and slash pine plantation management. Our objective was to quantify and compare vegetation composition and structure of longleaf, loblolly, and slash pine forests of differing ages, management strategies, and land-use histories. Information from this study will further our understanding and lead to inferences about functional differences among pine cover types. Vegetation and environmental data were collected in 49 overstory plots across Southlands Experiment Forest in Bainbridge, GA. Nested plots, i.e. midstory, understory, and herbaceous, were replicated four times within each overstory plot. Over 400 species were identified. Herbaceous species richness was variable for all three pine cover types. Herbaceous richness for longleaf, slash, and loblolly pine averaged 15, 13, and 12 species per m2, respectively. Longleaf pine plots had significantly more (p < 0.029) herbaceous species and greater herbaceous cover (p < 0.001) than loblolly or slash pine plots. Longleaf and slash pine plots were otherwise similar in species richness and stand structure, both having lower overstory density, midstory density, and midstory cover than loblolly pine plots. Multivariate analyses provided additional perspectives on vegetation patterns. Ordination and classification procedures consistently placed herbaceous plots into two groups which we refer to as longleaf pine benchmark (34 plots) and non-benchmark (15 plots). Benchmark plots typically contained numerous herbaceous species characteristic of relic longleaf pine/wiregrass communities found in the area. Conversely, non-benchmark plots contained fewer species characteristic of relic longleaf pine/wiregrass communities and more ruderal species common to highly disturbed sites. The benchmark group included 12 naturally regenerated longleaf plots and 22 loblolly, slash, and longleaf pine plantation plots encompassing a broad range of silvicultural disturbances. Non-benchmark plots included eight afforested old-field plantation plots and seven cutover plantation plots. Regardless of overstory species, all afforested old fields were low either in native species richness or in abundance. Varying degrees of this groundcover condition were also found in some cutover plantation plots that were classified as non-benchmark. Environmental variables strongly influencing vegetation patterns included agricultural history and fire frequency. Results suggest that land-use history, particularly related to agriculture, has a greater influence on groundcover composition and structure in southern pine forests than more recent forest management activities or pine cover type. Additional research is needed to identify the potential for afforested old fields to recover native herbaceous species. In the interim, high-yield plantation management should initially target old-field sites which already support reduced numbers of groundcover species. Sites which have not been farmed in the past 50-60 years should be considered for longleaf pine restoration and multiple-use objectives, since they have the greatest potential for supporting diverse native vegetation. (C) 2000 Elsevier Science B.V.

Map_plot and bgg_plot: software for integration of geoscience datasets

NASA Astrophysics Data System (ADS)

Gaillot, Philippe; Punongbayan, Jane T.; Rea, Brice

2004-02-01

Since 1985, the Ocean Drilling Program (ODP) has been supporting multidisciplinary research in exploring the structure and history of Earth beneath the oceans. After more than 200 Legs, complementary datasets covering different geological environments, periods and space scales have been obtained and distributed world-wide using the ODP-Janus and Lamont Doherty Earth Observatory-Borehole Research Group (LDEO-BRG) database servers. In Earth Sciences, more than in any other science, the ensemble of these data is characterized by heterogeneous formats and graphical representation modes. In order to fully and quickly assess this information, a set of Unix/Linux and Generic Mapping Tool-based C programs has been designed to convert and integrate datasets acquired during the present ODP and the future Integrated ODP (IODP) Legs. Using ODP Leg 199 datasets, we show examples of the capabilities of the proposed programs. The program map_plot is used to easily display datasets onto 2-D maps. The program bgg_plot (borehole geology and geophysics plot) displays data with respect to depth and/or time. The latter program includes depth shifting, filtering and plotting of core summary information, continuous and discrete-sample core measurements (e.g. physical properties, geochemistry, etc.), in situ continuous logs, magneto- and bio-stratigraphies, specific sedimentological analyses (lithology, grain size, texture, porosity, etc.), as well as core and borehole wall images. Outputs from both programs are initially produced in PostScript format that can be easily converted to Portable Document Format (PDF) or standard image formats (GIF, JPEG, etc.) using widely distributed conversion programs. Based on command line operations and customization of parameter files, these programs can be included in other shell- or database-scripts, automating plotting procedures of data requests. As an open source software, these programs can be customized and interfaced to fulfill any specific plotting need of geoscientists using ODP-like datasets.

Impacts of Long-Term Irrigation of Domestic Treated Wastewater on Soil Biogeochemistry and Bacterial Community Structure

PubMed Central

Wafula, Denis; White, John R.; Canion, Andy; Jagoe, Charles; Pathak, Ashish

2015-01-01

Freshwater scarcity and regulations on wastewater disposal have necessitated the reuse of treated wastewater (TWW) for soil irrigation, which has several environmental and economic benefits. However, TWW irrigation can cause nutrient loading to the receiving environments. We assessed bacterial community structure and associated biogeochemical changes in soil plots irrigated with nitrate-rich TWW (referred to as pivots) for periods ranging from 13 to 30 years. Soil cores (0 to 40 cm) were collected in summer and winter from five irrigated pivots and three adjacently located nonirrigated plots. Total bacterial and denitrifier gene abundances were estimated by quantitative PCR (qPCR), and community structure was assessed by 454 massively parallel tag sequencing (MPTS) of small-subunit (SSU) rRNA genes along with terminal restriction fragment length polymorphism (T-RFLP) analysis of nirK, nirS, and nosZ functional genes responsible for denitrification of the TWW-associated nitrate. Soil physicochemical analyses showed that, regardless of the seasons, pH and moisture contents (MC) were higher in the irrigated (IR) pivots than in the nonirrigated (NIR) plots; organic matter (OM) and microbial biomass carbon (MBC) were higher as a function of season but not of irrigation treatment. MPTS analysis showed that TWW loading resulted in the following: (i) an increase in the relative abundance of Proteobacteria, especially Betaproteobacteria and Gammaproteobacteria; (ii) a decrease in the relative abundance of Actinobacteria; (iii) shifts in the communities of acidobacterial groups, along with a shift in the nirK and nirS denitrifier guilds as shown by T-RFLP analysis. Additionally, bacterial biomass estimated by genus/group-specific real-time qPCR analyses revealed that higher numbers of total bacteria, Acidobacteria, Actinobacteria, Alphaproteobacteria, and the nirS denitrifier guilds were present in the IR pivots than in the NIR plots. Identification of the nirK-containing microbiota as a proxy for the denitrifier community indicated that bacteria belonged to alphaproteobacteria from the Rhizobiaceae family within the agroecosystem studied. Multivariate statistical analyses further confirmed some of the above soil physicochemical and bacterial community structure changes as a function of long-term TWW application within this agroecosystem. PMID:26253672

Wisconsin's forest, 2004: statistics and quality assurance

Treesearch

Mark H. Hansen; Charles H. Perry; Gary Brand; Ronald E. McRoberts

2008-01-01

The first full, annualized inventory of Wisconsin's forests was completed in 2004 after 6,478 forested plots were visited. An earlier publication summarized the results and presented issue - driven analyses (Perry et al. 2008) . This report includes detailed information on forest inventory methods...

MDplot: Visualise Molecular Dynamics

PubMed Central

Margreitter, Christian; Oostenbrink, Chris

2017-01-01

The MDplot package provides plotting functions to allow for automated visualisation of molecular dynamics simulation output. It is especially useful in cases where the plot generation is rather tedious due to complex file formats or when a large number of plots are generated. The graphs that are supported range from those which are standard, such as RMsD/RMsF (root-mean-square deviation and root-mean-square fluctuation, respectively) to less standard, such as thermodynamic integration analysis and hydrogen bond monitoring over time. All told, they address many commonly used analyses. In this article, we set out the MDplot package′s functions, give examples of the function calls, and show the associated plots. Plotting and data parsing is separated in all cases, i.e. the respective functions can be used independently. Thus, data manipulation and the integration of additional file formats is fairly easy. Currently, the loading functions support GROMOS, GROMACS, and AMBER file formats. Moreover, we also provide a Bash interface that allows simple embedding of MDplot into Bash scripts as the final analysis step. Availability The package can be obtained in the latest major version from CRAN (https://cran.r-project.org/package=MDplot) or in the most recent version from the project′s GitHub page at https://github.com/MDplot/MDplot, where feedback is also most welcome. MDplot is published under the GPL-3 license. PMID:28845302

Full-Genome Sequence Analysis of a Multirecombinant Echovirus 3 Strain Isolated from Sewage in Greece▿

PubMed Central

Kyriakopoulou, Zaharoula; Dedepsidis, Evaggelos; Pliaka, Vaia; Tsakogiannis, Dimitris; Pratti, Anastassia; Levidiotou-Stefanou, Stamatina; Markoulatos, Panayotis

2010-01-01

An echovirus 3 (Echo3) strain (strain LR31G7) was isolated from a sewage treatment plant in Greece in 2005. Full-genome molecular, phylogenetic, and SimPlot analyses were conducted in order to reveal the evolutionary pathways of the isolate. Nucleotide and phylogenetic analyses of part of the VP1 genomic region revealed that the isolated strain correlates with Echo3 strains isolated during the same year in France and Japan, implying that the same virus circulated in Europe and Asia. LR31G7 was found to be a recombinant that shares the 3′ part of its genome with an Echo25 strain isolated from asymptomatic infants in Norway in 2003. Nucleotide and SimPlot analyses of the VP1-2A junction, where the recombination was located, revealed the exact recombination breakpoint (nucleotides 3357 to 3364). Moreover, there is evidence that recombination events had occurred in 3B-3D region in the evolutionary history of the isolate. Our study indicates that recombination events play major roles in enterovirus evolution and that the circulation of multirecombinant strains with unknown properties could be potentially dangerous for public health. PMID:20129960

Metachronal wave analysis for non-Newtonian fluid under thermophoresis and Brownian motion effects

NASA Astrophysics Data System (ADS)

Shaheen, A.; Nadeem, S.

This paper analyse the mathematical model of ciliary motion in an annulus. The effect of convective heat transfer and nanoparticle are taken into account. The governing equations of Jeffrey six-constant fluid along with heat and nanoparticle are modelled and then simplified by using long wavelength and low Reynolds number assumptions. The reduced equations are solved with the help of homotopy perturbation method. The obtained expressions for the velocity, temperature and nanoparticles concentration profiles are plotted and the impact of various physical parameters are investigated for different peristaltic waves. Streamlines has also been plotted at the last part of the paper.

Development of a remote photoplethysmographic technique for human biometrics

NASA Astrophysics Data System (ADS)

Shi, Ping; Hu, Sijung; Echiadis, Angelos; Azorin Peris, Vicente; Zheng, Jia; Zhu, Yisheng

2009-02-01

Non-contact reflection photoplethysmography (NRPPG) is being developed to trace pulse features for comparison with contact photoplethysmography (CPPG). Simultaneous recordings of CPPG and NRPPG signals from 22 healthy subjects were studied. The power spectrum of PPG signals were analysed and compared between NRPPG and CPPG. The recurrence plot (RP) was used as a graphical tool to visualize the time dependent behaviour of the dynamics of the pulse signals. The agreement between NRPPG and CPPG for physiological monitoring, i.e. HRV parameters, was determined by means of the Bland-Altman plot and Pearson's correlation coefficient. The results indicated that NRPPG could be used for the assessment of cardio-physiological signals.

Cu, Zn and Mn uptake and redistribution in Cabernet Sauvignon grapes and wine: effect of soil metal content and plant vigor

NASA Astrophysics Data System (ADS)

Concepción Ramos, Maria; Romero, María Paz

2015-04-01

This study investigated the influence of leaf thinning on micronutrient (Cu, Zn and Mn) uptake and distribution in grape tissues, in a 16 year-old Cabernet Sauvignon vineyard. The analysis was carried out in two plots with differences in vigor (P1- high and P2-low) grown in calcareous soils. Vigour was analysed by the NDVI values. In each plot, two treatments (with and without leaf thinning after bloom) were applied. Total and the CaCl2-DTPA extractable fraction of these micronutrients were evaluated. Nutrient concentration in petiole were evaluated from veraison to harvest as well as the concentration of those elements in seeds and skins at ripening and in wines elaborated with grapes grown in each plot and treatment in 2013. Their relationships were evaluated. The soil extractable fraction did not give a good correlation with petiole concentrations. However, Mn in petiole was strongly correlated with soil total Mn. Cu and Zn had higher concentration at veraison than at harvest, while for Mn it was the opposite. Cu concentration in petiole and seeds was greater in the most vigorous plots, but there were not clear differences between treatments. Cu in seeds and skins correlated significantly but there was not correlation with Cu in petiole. Zn concentration in skins was quite similar in both plots, but with higher values in vines without leaf thinning. Zn concentrations in skins were correlated with Zn in petiole but no significant correlation was found with Zn in seeds. Higher concentrations were found in the no thinning treatment in skins. For Mn, petiole concentrations were greater in the high vigorous plot and in the leaf thinning treatment. However, petiole Zn concentrations were greater in the less vigorous plot and without clear effect of leaf thinning. Mn concentration in skins was greater in the less vigorous vines in both treatments and it was inversely correlated with Mn in seeds, but there were no significant correlation between them and Mn in petiole. In wine, significant differences between both plots were found for Cu and Zn, with greater values in the most vigorous vines and with some differences in the wines elaborated with grapes from the leaf thinning treatment and without it. Cu levels in wine ranged between 0.78 and 0.96 mg/l in plot 1 and between 0.28 and 0.44 mg/L in plot 2, respectively for the areas with and without leaf thinning. For Zn, levels ranged between 0.76 and 0.74 in plot 1and between 0.24 and 0.22 mg/L in plot 2. However, no differences were found between plots for Mn. Mn levels in wine ranged between 1 and 1.9 mg/L in plot 1 and between 1.12 and 1.2 mg/L in plot 2. This behavior was similar to that found in the skins and seed analysis.

Dining at the periodic table: metals concentrations as they relate to recycling.

PubMed

Johnson, Jeremiah; Harper, E M; Lifset, Reid; Graedel, T E

2007-03-01

A correlation between the prices of a variety of substances and their dilutions in their initial matrices was shown in 1959 by T.K. Sherwood. The research presented here shows that the relationship holds for engineering metals today, which we termed the metals-specific Sherwood plot. The concentrations of metals in products (e.g., printed wiring boards and automobiles) and waste streams (e.g., municipal solid waste, and construction and demolition debris) were plotted with this correlation. In addition, for the products and waste streams that undergo disassembly at end-of-life, the metals concentrations of the disassembled components were also plotted. It was found that most of the metals that are currently targeted for recycling have post-disassembly concentrations that lie above the metals-specific Sherwood plot (i.e., have concentrations that are more enriched than minimum profitable ore grades). This suggests that material concentration plays a role in the viability of recycling at end-of-life. As products grow in complexity and the variety of materials used, analyses such as this one provide insight for policymakers and those interested in material sustainability into macro-level trends of material use and future recycling practices.

Implementing optimal thinning strategies

Treesearch

Kurt H. Riitters; J. Douglas Brodie

1984-01-01

Optimal thinning regimes for achieving several management objectives were derived from two stand-growth simulators by dynamic programming. Residual mean tree volumes were then plotted against stand density management diagrams. The results supported the use of density management diagrams for comparing, checking, and implementing the results of optimization analyses....

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel

PubMed Central

Grapov, Dmitry; Newman, John W.

2012-01-01

Summary: Interactive modules for Data Exploration and Visualization (imDEV) is a Microsoft Excel spreadsheet embedded application providing an integrated environment for the analysis of omics data through a user-friendly interface. Individual modules enables interactive and dynamic analyses of large data by interfacing R's multivariate statistics and highly customizable visualizations with the spreadsheet environment, aiding robust inferences and generating information-rich data visualizations. This tool provides access to multiple comparisons with false discovery correction, hierarchical clustering, principal and independent component analyses, partial least squares regression and discriminant analysis, through an intuitive interface for creating high-quality two- and a three-dimensional visualizations including scatter plot matrices, distribution plots, dendrograms, heat maps, biplots, trellis biplots and correlation networks. Availability and implementation: Freely available for download at http://sourceforge.net/projects/imdev/. Implemented in R and VBA and supported by Microsoft Excel (2003, 2007 and 2010). Contact: John.Newman@ars.usda.gov Supplementary Information: Installation instructions, tutorials and users manual are available at http://sourceforge.net/projects/imdev/. PMID:22815358

A normalized plot as a novel and time-saving tool in complex enzyme kinetic analysis.

PubMed

Bravo, I G; Busto, F; De Arriaga, D; Ferrero, M A; Rodríguez-Aparicio, L B; Martínez-Blanco, H; Reglero, A

2001-09-15

A new data treatment is described for designing kinetic experiments and analysing kinetic results for multi-substrate enzymes. Normalized velocities are plotted against normalized substrate concentrations. Data are grouped into n + 1 families across the range of substrate or product tested, n being the number of substrates plus products assayed. It has the following advantages over traditional methods: (1) it reduces to less than a half the amount of data necessary for a proper description of the system; (2) it introduces a self-consistency checking parameter that ensures the 'scientific reliability' of the mathematical output; (3) it eliminates the need for a prior knowledge of Vmax; (4) the normalization of data allows the use of robust and fuzzy methods suitable for managing really 'noisy' data; (5) it is appropriate for analysing complex systems, as the complete general equation is used, and the actual influence of effectors can be typified; (6) it is amenable to being implemented as a software that incorporates testing and electing among rival kinetic models.

Scripting MODFLOW model development using Python and FloPy

USGS Publications Warehouse

Bakker, Mark; Post, Vincent E. A.; Langevin, Christian D.; Hughes, Joseph D.; White, Jeremy; Starn, Jeffrey; Fienen, Michael N.

2016-01-01

Graphical user interfaces (GUIs) are commonly used to construct and postprocess numerical groundwater flow and transport models. Scripting model development with the programming language Python is presented here as an alternative approach. One advantage of Python is that there are many packages available to facilitate the model development process, including packages for plotting, array manipulation, optimization, and data analysis. For MODFLOW-based models, the FloPy package was developed by the authors to construct model input files, run the model, and read and plot simulation results. Use of Python with the available scientific packages and FloPy facilitates data exploration, alternative model evaluations, and model analyses that can be difficult to perform with GUIs. Furthermore, Python scripts are a complete, transparent, and repeatable record of the modeling process. The approach is introduced with a simple FloPy example to create and postprocess a MODFLOW model. A more complicated capture-fraction analysis with a real-world model is presented to demonstrate the types of analyses that can be performed using Python and FloPy.

Set-up and calibration of an outdoor nozzle-type rainfall simulator for soil erosion studies at the Masse experimental station (central Italy)

NASA Astrophysics Data System (ADS)

Vergni, Lorenzo; Todisco, Francesca

2016-04-01

This contribution describes the technical characteristics and the preliminary calibration of a rainfall simulator recently installed by the Department of Agricultural, Food and Environmental Sciences (Perugia University) at the Masse experimental station located 20 km south of Perugia, in the region of Umbria (central Italy). The site includes some USLE plots of different length λ = 11 and 22 m and width w = 2, 4 and 8 m, oriented parallel to a 16 % slope and kept free of vegetation by frequent ploughing. Since 2008, the station enabled to collect data from more than 80 erosive events, that were mainly used to investigate the relationship between rainfall characteristics and soil loss. The relevant soil loss variability that characterizes erosive storm events with similar overall characteristics (duration and/or depth) can be explained by the different rainfall profile of erosive storms and by the different antecedent soil aggregate stability. To analyse in more detail these aspects, recently, the Masse experimental station has been equipped with a semi-portable rainfall simulator placed over two micro-plots of 1x1 m each, having the same topographic and pedologic conditions of the adjacent USLE plots. The rainfall simulator consists of four full-cone spray nozzles for each micro-plot, placed at the angles of a 0.18-m square, centred over the plot at a height of 2.7 m above the ground. The operating pressure is regulated by pressure regulating valves and checked by pressure gauges mounted in correspondence of each nozzle. An electronic control unit regulates the start and stop of the inlet solenoid valves. A range of rainfall intensities can be achieved, by activating different combinations of nozzles (15 different intensities) also during the same simulation trial. The particular design of the plots allows to collect separately the runoff volume deriving from the plots and the water volume fallen outside of the plot. In this way it is possible to derive, by difference, the actual infiltration volume. The experiments are carried out simultaneously on the two adjacent micro-plots. In particular, this contribution reports the results of the first experimental trials aimed to assess the uniformity attainable by single nozzles and its reproducibility (between plots and in time). The interferences between adjacent nozzles (when they work simultaneously) were also evaluated.

Biochar in vineyards: impact on soil quality and crop yield four years after the application

NASA Astrophysics Data System (ADS)

Ferreira, Carla; Verheijen, Frank; Puga, João; Keizer, Jacob; Ferreira, António

2017-04-01

Biochar is a recalcitrant organic carbon compound, created by biomass heating at high temperatures (300-1000°C) under low oxygen concentrations. Biochar application to agricultural soils has received increasing attention over the last years, due to its climate change mitigation and adaptation potential and reported improved soil properties and functions relevant to agronomic and environmental performance. Reported impacts are linked with increased cation exchange capacity, enhanced nutrient and water retention, and positive influences on soil microbial communities, which influence crop yields. Nevertheless, few studies have focused on mid-to-long term impacts of biochar application. This study investigated the impact of biochar on soil quality and crop yield four years after biochar application in a vineyard in North-Central Portugal. The site has a Mediterranean climate with a strong Atlantic Ocean influence, with mean annual rainfall and temperature of 1100 mm and 15°C, respectively. The soil is a relatively deep ( 80cm) sandy loam Cambisol, with gentle slopes (3°). The experimental design included three treatments: (i) control, without biochar; (ii) high biochar application rate (40 ton/ha); and (iii) biochar compost (40 ton/ha, 10% biochar). Three plots per treatment (2m×3m) were installed in March 2012, using a mini-rotavator (0-15cm depth). In May 2016, soil quality was also assessed through soil surveys and sampling. Penetration resistance was performed at the soil surface with a pocket penetrometer, and soil surface sampling rings were used for bulk density analyses (100 cm3). Bulked soil samples (0-30 cm) were collected in each plot for aggregate stability, microbial biomass (by chloroform fumigation extraction) and net mineralization rate (through photometric determination of non-incubated and incubated samples). Decomposition rate and litter stabilisation was assessed over a 3-month period through the Tea Bag Index (Keuskamp et al., 2013). The number, type and biomass of earthworms was recorded in each plot, at the soil surface (through excavation, 30cm×30cm×30cm) and sub-surface (using a mustard-tap water solution in the excavated hole). Crop yield was evaluated during harvesting (August 2016), through the number and weight of grape clusters. The potential impact of biochar on grape quality was investigated by total acidity, pH, potential alcoholic strength and total sugar in must analyses. Four years after the application, plots with high biochar showed lowest soil resistance, slightly lower bulk density, higher crop yield and must quality, than control plots. However, the soil of biochar plots also displayed slightly lower aggregate stability, microbial biomass, number and biodiversity of earthworms, although higher net-N mineralization, decomposition rate and litter stabilization. Plots with biochar and compost showed lowest earthworms, decomposition rate and litter stabilization, but highest crop yield that the other two treatments. Nevertheless, minor differences between three treatment plots suggest that potential impacts of biochar on soil quality and crop yield may persist during a relatively short period.

Rainfall simulation experiments to study sediment redistribution using rare earth element oxides as tracers under conventional and conservation agricultural practices

NASA Astrophysics Data System (ADS)

Tóth, Adrienn; Jakab, Gergely; Sipos, Péter; Karlik, Máté; Madarász, Balázs; Zacháry, Dóra; Szabó, Judit; Szalai, Zoltán

2017-04-01

Rare earth elements (REE) have very favourable characteristics for being ideal sediment tracers as they are characterised by strong binding to soil particles, low mobility, low background concentration in soils, environmental benignity, high analytical sensitivity and they can be detected relatively easily and inexpensively in soils. The group of REEs consist of 16 elements with similar chemical properties, but at the same time, they are clearly distinguishable enabling multiple tracking of sediment deriving from different parts of the studied area, as well as mapping redistribution processes by appropriate designing of subareas marked by different REEs. In this study, rainfall simulation experiments were carried out to compare the loss and redistribution of soil sediments in two plots under conventional and conservation agricultural practices. Five different rainfall intensities (up to 80 mm/h) were applied to both plots. Sources and pathways of sediments within the two plots were studied using REE-oxides as tracers. Approximately 1,000 mg/kg of Er2O3, Ho2O3 and Sm2O3 (calculated to the upper 1 cm of the soil) were dispersed to the soil surface with banded distribution; each transversal band covered the third of the surface are of the plots. Concentration of the REE-oxides in the sediment leaving the plots, and that of the surface soil before and after the experiment were analysed by X-Ray fluorescence spectrometry. Significant sediment losses were found for both plots after the experiments, with slightly different characteristics between the conventional and conservation ones. Highest difference in loss of added REEs was found in the upper third of the plots with 81 ± 19% in the conventional and 71 ± 21% in the conservation ones. These values have been equalized downwards with almost complete losses in the lower third of the plots (99 ± 2% and 97 ± 4%, respectively). Only very small part of the removed sediment has been accumulated in the lower parts of the plots, they rather mostly leaved the study area. These accumulation zones showed patchy distribution and could be characterized by slightly higher REE concentrations in the conservation plot. Also, large variances in the REE amounts removed from the study plots were found during the experiment with slight differences between the two plots. Thanks to the use of the REE tracers, information was received not only on the sediment amounts leaving the area due to the individual rainfall events but also on the source of them within the plot. Our data also suggest that differences between the conventional and conservation plots can be observed even in the short term. The authors are grateful to the support of the National Research, Development and Innovation Office (OTKA PD 112729). A. Tóth also thanks for the support of the János Bolyai Research Scholarship of the Hungarian Academy of Sciences.

The effects of one-time inversion tillage on soil physical properties after long-term reduced tillage

NASA Astrophysics Data System (ADS)

Kuhwald, Michael; Augustin, Katja; Duttmann, Rainer

2017-04-01

The positive effects of reduced tillage on soil stability and on various soil functions such as infiltrability or saturated hydraulic conductivity are known in general. However, long-term employment of conservation tillage can increase weed pressure, damage by mice and soil compaction. Thus, the application of one-time inversion tillage (occasional or strategic tillage) is customarily used as a method for overcoming these drawbacks. Hitherto, the effects of one-time inversion tillage on soil physical properties have not been investigated. This study focuses on analysing whether the improved soil physical properties derived by long-term reduced tillage remain after one-time inversion tillage by mouldboard plough. The study was carried out in a 5.5 ha field in the southern part of Lower Saxony, Germany. Since 1996, this field has been subdivided into three plots, one managed conventionally by using a mouldboard plough (CT), while in the others a chisel plough (RT1) and a disk harrow (RT2) were employed. In October 2014, the entire field was ploughed by mouldboard plough to a depth of 30 cm. During the following year, four field studies were conducted to analyse the effects of this one-time inversion tillage on volumetric soil water content, bulk density, saturated hydraulic conductivity and infiltration rate. Additionally, penetration resistance measurements taken across the entire field were interpolated by kriging to analyse the spatial distribution of soil characteristics. The surveys of RT1 and RT2 were compared with CT and with analyses conducted before the one-time inversion tillage. This study shows that positive effects of long-term conservation tillage on several soil physical characteristics still remain after one-time mouldboard ploughing. Throughout the entire cropping season, the topsoil tilled under former conservation tillage practices revealed significantly higher (p < 0.05) values of saturated hydraulic conductivities and infiltration rates compared to the plot that experienced continuously conventional tillage. Moreover, field-wide measuring of penetration resistance indicated the removal of the compaction zone developed under conservation tillage in soil depths between 10 and 20 cm. After mouldboard ploughing, penetration resistance in the topsoil was significantly (p < 0.05) reduced in both plots, showing the same order of magnitude as measured in the conventionally managed plot. The results of this study suggest that one-time inversion tillage with a mouldboard plough offers a suitable management option for overcoming some of the main disadvantages associated with long-term conservation tillage, while conserving the improved soil physical properties and functions.

Comparison of Data Quality of NOAA's ISIS and SURFRAD Networks to NREL's SRRL-BMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderberg, M.; Sengupta, M.

2014-11-01

This report provides analyses of broadband solar radiometric data quality for the National Oceanic and Atmospheric Administration's Integrated Surface Irradiance Study and Surface Radiation Budget Network (SURFRAD) solar measurement networks. The data quality of these networks is compared to that of the National Renewable Energy Laboratory's Solar Radiation Research Laboratory Baseline Measurement System (SRRL-BMS) native data resolutions and hourly averages of the data from the years 2002 through 2013. This report describes the solar radiometric data quality testing and flagging procedures and the method used to determine and tabulate data quality statistics. Monthly data quality statistics for each network weremore » plotted by year against the statistics for the SRRL-BMS. Some of the plots are presented in the body of the report, but most are in the appendix. These plots indicate that the overall solar radiometric data quality of the SURFRAD network is superior to that of the Integrated Surface Irradiance Study network and can be comparable to SRRL-BMS.« less

GenomeGraphs: integrated genomic data visualization with R.

PubMed

Durinck, Steffen; Bullard, James; Spellman, Paul T; Dudoit, Sandrine

2009-01-06

Biological studies involve a growing number of distinct high-throughput experiments to characterize samples of interest. There is a lack of methods to visualize these different genomic datasets in a versatile manner. In addition, genomic data analysis requires integrated visualization of experimental data along with constantly changing genomic annotation and statistical analyses. We developed GenomeGraphs, as an add-on software package for the statistical programming environment R, to facilitate integrated visualization of genomic datasets. GenomeGraphs uses the biomaRt package to perform on-line annotation queries to Ensembl and translates these to gene/transcript structures in viewports of the grid graphics package. This allows genomic annotation to be plotted together with experimental data. GenomeGraphs can also be used to plot custom annotation tracks in combination with different experimental data types together in one plot using the same genomic coordinate system. GenomeGraphs is a flexible and extensible software package which can be used to visualize a multitude of genomic datasets within the statistical programming environment R.

NMR Spectroscopy Identifies Metabolites Translocated from Powdery Mildew Resistant Rootstocks to Susceptible Watermelon Scions.

PubMed

Mahmud, Iqbal; Kousik, Chandrasekar; Hassell, Richard; Chowdhury, Kamal; Boroujerdi, Arezue F

2015-09-16

Powdery mildew (PM) disease causes significant loss in watermelon. Due to the unavailability of a commercial watermelon variety that is resistant to PM, grafting susceptible cultivars on wild resistant rootstocks is being explored as a short-term management strategy to combat this disease. Nuclear magnetic resonance-based metabolic profiles of susceptible and resistant rootstocks of watermelon and their corresponding susceptible scions (Mickey Lee) were compared to screen for potential metabolites related to PM resistance using multivariate principal component analysis. Significant score plot differences between the susceptible and resistant groups were revealed through Mahalanobis distance analysis. Significantly different spectral buckets and their corresponding metabolites (including choline, fumarate, 5-hydroxyindole-3-acetate, and melatonin) have been identified quantitatively using multivariate loading plots and verified by volcano plot analyses. The data suggest that these metabolites were translocated from the powdery mildew resistant rootstocks to their corresponding powdery mildew susceptible scions and can be related to PM disease resistance.

A critical evaluation of theories for predicting microcracking in composite laminates

NASA Technical Reports Server (NTRS)

Nairn, John A.; Hu, Shoufeng; Bark, Jong S.

1993-01-01

We present experimental results on 21 different layups of Hercules AS4 carbon fiber/3501-6 epoxy laminates. All laminates had 90 deg plies; some had them in the middle, while some had them on a free surface. During tensile loading, the first form of damage in all laminates was microcracking of the 90 deg plies. For each laminate, we recorded both the crack density and the complete distribution of crack spacings as a function of the applied load. By rearranging various microcracking theories, we developed a master-curve approach that permitted plotting the results from all laminates on a single plot. By comparing master-curve plots for different theories, it was possible to critically evaluate the quality of those theories. We found that a critical-energy-release-rate criterion calculated using a 2D variational stress analysis gave the best results. All microcracking theories based on a strength-failure criteria gave poor results. All microcracking theories using 1D stress analyses, regardless of the failure criterion, also gave poor results.

Recurrence Plots: a New Tool for Quantification of Cardiac Autonomic Nervous System Recovery after Transplant.

PubMed

Takakura, Isabela Thomaz; Hoshi, Rosangela Akemi; Santos, Márcio Antonio; Pivatelli, Flávio Correa; Nóbrega, João Honorato; Guedes, Débora Linhares; Nogueira, Victor Freire; Frota, Tuane Queiroz; Castelo, Gabriel Castro; Godoy, Moacir Fernandes de

2017-01-01

To evaluate a possible evolutionary post-heart transplant return of autonomic function using quantitative and qualitative information from recurrence plots. Using electrocardiography, 102 RR tachograms of 45 patients (64.4% male) who underwent heart transplantation and that were available in the database were analyzed at different follow-up periods. The RR tachograms were collected from patients in the supine position for about 20 minutes. A time series with 1000 RR intervals was analyzed, a recurrence plot was created, and the following quantitative variables were evaluated: percentage of determinism, percentage of recurrence, average diagonal length, Shannon entropy, and sample entropy, as well as the visual qualitative aspect. Quantitative and qualitative signs of heart rate variability recovery were observed after transplantation. There is evidence that autonomic innervation of the heart begins to happen gradually after transplantation. Quantitative and qualitative analyses of recurrence can be useful tools for monitoring cardiac transplant patients and detecting the gradual return of heart rate variability.

One hundred and six years of population and community dynamics of Sonoran Desert Laboratory perennials

USGS Publications Warehouse

Rodriguez-Buritica, Susana; Raichle, Helen; Webb, Robert H.; Turner, Raymond M.; Venable, Larry

2013-01-01

This data set constitutes all information associated with the Spalding-Shreve permanent vegetation plots from 1906 through 2012, which is the longest-running plant monitoring program in the world. The program consists of detailed maps of all Sonoran Desert perennial plants in 30 permanent plots located on Tumamoc Hill, near Tucson, Arizona, USA. Most of these plots are 10 m × 10 m quadrats that were established by Volney Spalding and Forrest Shreve between 1906 and 1928. Analyses derived from these data have been pivotal in testing early theories on plant community succession, plant life history traits, plant longevity, and population dynamics. One of the major contributions of this data set is the species-specific demographic traits that derived from estimating individual plant trajectories for more than 106 years. Further use of these data might shed light on spatially explicit population and community dynamics, as well as long-term changes attributable to global change. Data presented here consist of digital versions of original maps created between 1906 and 1984 and digital data from recent censuses between 1993 and 2012. Attributes associated with these maps include location and coverage of all shrubs, and in some cases, plant height. In addition, we present plot-specific summaries of plant cover and density for each census year and all other information collected, including seedling counts, grass coverage, and annual species enumerations. We reference the repeat photography of these plots, which began in 1906; these images are stored at the Desert Laboratory Collection of Repeat Photography in Tucson. Initial data collection consisted of grid-mapping the plots manually on graph paper; starting in 1993, Total Stations (which allow a direct digitalization, and more accurate mapping) were used to survey root crowns and canopies.

Study of the Dalitz decay ϕ → ηe+e- with the KLOE detector

NASA Astrophysics Data System (ADS)

Babusci, D.; Balwierz-Pytko, I.; Bencivenni, G.; Bloise, C.; Bossi, F.; Branchini, P.; Budano, A.; Caldeira Balkeståhl, L.; Ceradini, F.; Ciambrone, P.; Curciarello, F.; Czerwiński, E.; Danè, E.; De Leo, V.; De Lucia, E.; De Robertis, G.; De Santis, A.; De Simone, P.; Di Cicco, A.; Di Domenico, A.; Di Salvo, R.; Domenici, D.; Erriquez, O.; Fanizzi, G.; Fantini, A.; Felici, G.; Fiore, S.; Franzini, P.; Gajos, A.; Gauzzi, P.; Giardina, G.; Giovannella, S.; Graziani, E.; Happacher, F.; Heijkenskjöld, L.; Höistad, B.; Johansson, T.; Kamińska, D.; Krzemien, W.; Kupsc, A.; Lee-Franzini, J.; Loddo, F.; Loffredo, S.; Mandaglio, G.; Martemianov, M.; Martini, M.; Mascolo, M.; Messi, R.; Miscetti, S.; Morello, G.; Moricciani, D.; Moskal, P.; Palladino, A.; Passeri, A.; Patera, V.; Prado Longhi, I.; Ranieri, A.; Santangelo, P.; Sarra, I.; Schioppa, M.; Sciascia, B.; Silarski, M.; Tortora, L.; Venanzoni, G.; Wiślicki, W.; Wolke, M.

2015-03-01

We have studied the vector to pseudoscalar conversion decay ϕ → ηe+e-, with η →π0π0π0, with the KLOE detector at DAΦNE. The data set of 1.7 fb-1 of e+e- collisions at √{ s} ∼Mϕ contains a clear conversion decay signal of ∼ 31 , 000 events from which we measured a value of BR (ϕ → ηe+e-) = (1.075 ± 0.007 ± 0.038) ×10-4. The same sample is used to determine the transition form factor by a fit to the e+e- invariant mass spectrum, obtaining bϕη = (1.28 ±0.10-0.08+0.09) GeV-2, that improves by a factor of five the precision of the previous measurement and is in good agreement with VMD expectations.

Structure of hadron resonances with a nearby zero of the amplitude

NASA Astrophysics Data System (ADS)

Kamiya, Yuki; Hyodo, Tetsuo

2018-03-01

We discuss the relation between the analytic structure of the scattering amplitude and the origin of an eigenstate represented by a pole of the amplitude. If the eigenstate is not dynamically generated by the interaction in the channel of interest, the residue of the pole vanishes in the zero coupling limit. Based on the topological nature of the phase of the scattering amplitude, we show that the pole must encounter with the Castillejo-Dalitz-Dyson (CDD) zero in this limit. It is concluded that the dynamical component of the eigenstate is small if a CDD zero exists near the eigenstate pole. We show that the line shape of the resonance is distorted from the Breit-Wigner form as an observable consequence of the nearby CDD zero. Finally, studying the positions of poles and CDD zeros of the K ¯ N -π Σ amplitude, we discuss the origin of the eigenstates in the Λ (1405 ) region.

Radiocesium concentrations in soil and leaf after decontamination practices in a forest plantation highly polluted by the Fukushima accident.

PubMed

López-Vicente, Manuel; Onda, Yuichi; Takahashi, Junko; Kato, Hiroaki; Chayama, Shinya; Hisadome, Keigo

2018-08-01

Owing to the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident a vast amount of radiocesium was released polluting the land. Afterwards, a variety of decontamination practices has been done, reducing the ambient dose rates. In this study we evaluated the effectiveness of eight forest decontamination practices by means of monitoring the radiocesium ( 137 Cs) concentration in soil and leaf samples, and the daily discharge rates in ten plots during 27 months (May 2013-July 2015). A forest plantation located 16 km southwest to the FDNPP and within the exclusion area was selected. Radiocesium concentrations were analysed using a germanium gamma ray detector. The differences in radiocesium activities between the different plots were statistically significant (p < 0.05) and four homogeneous groups were distinguished. Tree thinning and litter removal greatly reduced the radioactivity and the two plots devoted to these practices presented the highest discharge rates of 137 Cs (Th + LR; 350-380 Bq/m 2 day), followed by the two Th plots (163-174 Bq/m 2 day). The clearcutting with LR and the LR plots (104 and 92 Bq/m 2 day) also had higher rates than those rates in the control plots (51 Bq/m 2 day). We only observed low rates in the two plots with matting (19-25 Bq/m 2 day). The temporal variability was explained by (i) the different rainfall depths registered during the measurement intervals (accumulated precipitation from 14 to 361 mm); and (ii) the fluctuations of the total surface coverage. The decrease trend in radiocesium concentration was high in 2013, moderate in 2014 and low in 2015 owing to the vegetation recovery after the countermeasures, thus reducing the possibility of the second pollution of the neighbouring areas. The average proportions of contribution of 137 Cs discharge by soil and leaf fraction were 96.6% and 3.4%. Copyright © 2018 Elsevier Ltd. All rights reserved.

Portfolio effects, climate change, and the persistence of small populations: analyses on the rare plant Saussurea weberi.

PubMed

Abbott, Ronald E; Doak, Daniel F; Peterson, Megan L

2017-04-01

The mechanisms that stabilize small populations in the face of environmental variation are crucial to their long-term persistence. Building from diversity-stability concepts in community ecology, within-population diversity is gaining attention as an important component of population stability. Genetic and microhabitat variation within populations can generate diverse responses to common environmental fluctuations, dampening temporal variability across the population as a whole through portfolio effects. Yet, the potential for portfolio effects to operate at small scales within populations or to change with systematic environmental shifts, such as climate change, remain largely unexplored. We tracked the abundance of a rare alpine perennial plant, Saussurea weberi, in 49 1-m 2 plots within a single population over 20 yr. We estimated among-plot correlations in log annual growth rate to test for population-level synchrony and quantify portfolio effects across the 20-yr study period and also in 5-yr subsets based on June temperature quartiles. Asynchrony among plots, due to different plot-level responses to June temperature, reduced overall fluctuations in abundance and the probability of decline in population models, even when accounting for the effects of density dependence on dynamics. However, plots became more synchronous and portfolio effects decreased during the warmest years of the study, suggesting that future climate warming may erode stabilizing mechanisms in populations of this rare plant. © 2017 by the Ecological Society of America.

Sperm DNA damage output parameters measured by the alkaline Comet assay and their importance.

PubMed

Simon, L; Aston, K I; Emery, B R; Hotaling, J; Carrell, D T

2017-03-01

The alkaline Comet assay has shown high diagnostic value to determine male reproductive health and prognostic ability to predict ART success. Here, spermatozoon was analysed in 47 fertile donors and 238 patients, including 132 couples undergoing ART [semen was collected: Group I - within 3 months of their treatment (n = 79); and Group II - 3 months prior to their treatment (n = 53)]. We introduce four Comet distribution plots (A, B1, B2 and C) by plotting the level of DNA damage (x-axis) and percentage of comets (y-axis). Fertile donors had low mean DNA damage, olive tail moment and per cent of spermatozoa with damage and increased type A plots. Comet parameters were associated with clinical pregnancies in Group I. About 66% of couples with type A distribution plot were successful after ART, whereas couples with type B1, B2 and C distribution plots achieved 56%, 44% and 33% pregnancies respectively. The efficiency of the Comet assay was due to complete decondensation process, where the compact sperm nuclear DNA (28.2 ± 0.2 μm 3 ) is decondensed to ~63 μm 3 (before lysis) and ~1018 μm 3 (after lysis). A combinational analysis of all the Comet output parameters may provide a comprehensive evaluation of patient's reproductive health as these parameters measure different aspects of DNA damage within the spermatozoa. © 2016 Blackwell Verlag GmbH.

Using the NASTRAN Thermal Analyzer to simulate a flight scientific instrument package

NASA Technical Reports Server (NTRS)

Lee, H.-P.; Jackson, C. E., Jr.

1974-01-01

The NASTRAN Thermal Analyzer has proven to be a unique and useful tool for thermal analyses involving large and complex structures where small, thermally induced deformations are critical. Among its major advantages are direct grid point-to-grid point compatibility with large structural models; plots of the model that may be generated for both conduction and boundary elements; versatility of applying transient thermal loads especially to repeat orbital cycles; on-line printer plotting of temperatures and rate of temperature changes as a function of time; and direct matrix input to solve linear differential equations on-line. These features provide a flexibility far beyond that available in most finite-difference thermal analysis computer programs.

Conical Pendulum--Linearization Analyses

ERIC Educational Resources Information Center

Dean, Kevin; Mathew, Jyothi

2016-01-01

A theoretical analysis is presented, showing the derivations of seven different linearization equations for the conical pendulum period "T", as a function of radial and angular parameters. Experimental data obtained over a large range of fixed conical pendulum lengths (0.435 m-2.130 m) are plotted with the theoretical lines and…

Characterization of Transiting Exoplanets by Way of Differential Photometry

ERIC Educational Resources Information Center

Cowley, Michael; Hughes, Stephen

2014-01-01

This paper describes a simple activity for plotting and characterizing the light curve from an exoplanet transit event by way of differential photometry analysis. Using free digital imaging software, participants analyse a series of telescope images with the goal of calculating various exoplanet parameters, including size, orbital radius and…

Do We Really Need Performance Objectives?

ERIC Educational Resources Information Center

Duenk, Lester G.

Trade and industrial education (T&I) has been using performance-based instructional systems long before competency-based education (CBE) emerged as a creative innovation in other subject areas. Allen devised the forerunner of the present CBE system in 1917 by carefully plotting competencies and delineating job analyses from these, and Fryklund's…

Dynamics of heart rate variability analysed through nonlinear and linear dynamics is already impaired in young type 1 diabetic subjects.

PubMed

Souza, Naiara M; Giacon, Thais R; Pacagnelli, Francis L; Barbosa, Marianne P C R; Valenti, Vitor E; Vanderlei, Luiz C M

2016-10-01

Autonomic diabetic neuropathy is one of the most common complications of type 1 diabetes mellitus, and studies using heart rate variability to investigate these individuals have shown inconclusive results regarding autonomic nervous system activation. Aims To investigate the dynamics of heart rate in young subjects with type 1 diabetes mellitus through nonlinear and linear methods of heart rate variability. We evaluated 20 subjects with type 1 diabetes mellitus and 23 healthy control subjects. We obtained the following nonlinear indices from the recurrence plot: recurrence rate (REC), determinism (DET), and Shanon entropy (ES), and we analysed indices in the frequency (LF and HF in ms2 and normalised units - nu - and LF/HF ratio) and time domains (SDNN and RMSSD), through analysis of 1000 R-R intervals, captured by a heart rate monitor. There were reduced values (p<0.05) for individuals with type 1 diabetes mellitus compared with healthy subjects in the following indices: DET, REC, ES, RMSSD, SDNN, LF (ms2), and HF (ms2). In relation to the recurrence plot, subjects with type 1 diabetes mellitus demonstrated lower recurrence and greater variation in their plot, inter-group and intra-group, respectively. Young subjects with type 1 diabetes mellitus have autonomic nervous system behaviour that tends to randomness compared with healthy young subjects. Moreover, this behaviour is related to reduced sympathetic and parasympathetic activity of the autonomic nervous system.

[Analysis of Foetal Heart Rate Data using Complex Software: Comparison of Recurrence Plot of Foetal Heart Rate with the Course of Pregnancy -].

PubMed

Jörn, H; Morgenstern, B; Wassenberg, B; Rath, W

2004-08-01

Is it useful to further analyse foetal heart rate to improve the prediction of pregnancy complications? The analysis of the foetal heart rate is usually based on the variability of the heart rate, i. e. the more variable the heart rate presents - except a decrease - the better the condition of the foetus is. The same concept is applied in our own analysis which differs only in the presentation of the data. We analysed 25 non-stress-tests from unselected third trimester pregnancies using sophisticated software. The recurrence plot (RP) is able to rearrange data from foetal heart rate monitoring in order to make the heart rate variability visible. We developed criteria for a normal and an abnormal test result describing the structure of the diagram to predict an uneventful and a high-risk pregnancy, respectively. 11 out of 11 patients with uneventful course and outcome of pregnancy showed a coarse and blurred RP pattern. 12 out of 14 (86 %) patients developing either intrauterine growth retardation or preeclampsia and requiring caesarean section because of foetal heart rate abnormalities showed a fine and clear RP pattern. Our preliminary results show that it makes sense to further evaluate foetal heart rate variability in order to predict pregnancy complications. Computer programs including the algorithms needed (calculation of the recurrence plot) are not expensive and easy to handle. A widespread use of these programs represents the basis requirement for large controlled clinical trials.

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.

PubMed

Ye, Jia; Zhang, Yong; Cui, Huihai; Liu, Jiawei; Wu, Yuqing; Cheng, Yun; Xu, Huixing; Huang, Xingxin; Li, Shengting; Zhou, An; Zhang, Xiuqing; Bolund, Lars; Chen, Qiang; Wang, Jian; Yang, Huanming; Fang, Lin; Shi, Chunmei

2018-05-18

WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. Owing largely to the rapid development of high-throughput sequencing and the increasing acceptance of GO, WEGO has benefitted from outstanding performance regarding the number of users and citations in recent years, which motivated us to update to version 2.0. WEGO uses the GO annotation results as input. Based on GO's standardized DAG (Directed Acyclic Graph) structured vocabulary system, the number of genes corresponding to each GO ID is calculated and shown in a graphical format. WEGO 2.0 updates have targeted four aspects, aiming to provide a more efficient and up-to-date approach for comparative genomic analyses. First, the number of input files, previously limited to three, is now unlimited, allowing WEGO to analyze multiple datasets. Also added in this version are the reference datasets of nine model species that can be adopted as baselines in genomic comparative analyses. Furthermore, in the analyzing processes each Chi-square test is carried out for multiple datasets instead of every two samples. At last, WEGO 2.0 provides an additional output graph along with the traditional WEGO histogram, displaying the sorted P-values of GO terms and indicating their significant differences. At the same time, WEGO 2.0 features an entirely new user interface. WEGO is available for free at http://wego.genomics.org.cn.

Analysis of variability of tropical Pacific sea surface temperatures

NASA Astrophysics Data System (ADS)

Davies, Georgina; Cressie, Noel

2016-11-01

Sea surface temperature (SST) in the Pacific Ocean is a key component of many global climate models and the El Niño-Southern Oscillation (ENSO) phenomenon. We shall analyse SST for the period November 1981-December 2014. To study the temporal variability of the ENSO phenomenon, we have selected a subregion of the tropical Pacific Ocean, namely the Niño 3.4 region, as it is thought to be the area where SST anomalies indicate most clearly ENSO's influence on the global atmosphere. SST anomalies, obtained by subtracting the appropriate monthly averages from the data, are the focus of the majority of previous analyses of the Pacific and other oceans' SSTs. Preliminary data analysis showed that not only Niño 3.4 spatial means but also Niño 3.4 spatial variances varied with month of the year. In this article, we conduct an analysis of the raw SST data and introduce diagnostic plots (here, plots of variability vs. central tendency). These plots show strong negative dependence between the spatial standard deviation and the spatial mean. Outliers are present, so we consider robust regression to obtain intercept and slope estimates for the 12 individual months and for all-months-combined. Based on this mean-standard deviation relationship, we define a variance-stabilizing transformation. On the transformed scale, we describe the Niño 3.4 SST time series with a statistical model that is linear, heteroskedastic, and dynamical.

Can We Monitor Ecosystem Function Using Keeling Plot Analyses of Nocturnal Cold-Air Drainage?

NASA Astrophysics Data System (ADS)

Bond, B. J.; Ocheltree, T.; Pypker, T.; Unsworth, M. H.; Mix, A. C.; William, R.

2003-12-01

The carbon isotope signature of ecosystem respiration, δ 13CR, as measured by the Keeling Plot approach, has been related to short-term variations in weather and ecosystem function in several recent studies. In order to obtain an adequate range of [CO2] and to sample a consistent vegetation type, investigators typically select sampling locations in relatively flat terrain and uniform canopy cover, but these are unusual conditions for many forested ecosystems. In a pilot study, we are collecting samples for Keeling Plot analyses in cold-air drainage systems in small (60-100 ha), deeply-incised watersheds, one covered with old-growth (ca 450-years-old) Douglas-fir/hemlock forest and one covered with young (ca 45-years-old) Douglas-fir forest. We found that the nightly range of [CO2] was typically 380-460 ppm, sufficient to develop good estimates of δ 13CR. At any point in time there was little variation in [CO2] with height through the canopy (0.5-30m), so the required range was obtained by sampling over several hours. There was no indication that samples taken from different heights or at different times of night represented sources with different isotopic signatures. The isotopic signature of respired CO2 in the older watershed averaged about 1 per mil greater than that of the young watershed, and δ 13CR of both locations correlated with modeled stomatal conductance 6 days prior to flask sampling.

Homeopathy: meta-analyses of pooled clinical data.

PubMed

Hahn, Robert G

2013-01-01

In the first decade of the evidence-based era, which began in the mid-1990s, meta-analyses were used to scrutinize homeopathy for evidence of beneficial effects in medical conditions. In this review, meta-analyses including pooled data from placebo-controlled clinical trials of homeopathy and the aftermath in the form of debate articles were analyzed. In 1997 Klaus Linde and co-workers identified 89 clinical trials that showed an overall odds ratio of 2.45 in favor of homeopathy over placebo. There was a trend toward smaller benefit from studies of the highest quality, but the 10 trials with the highest Jadad score still showed homeopathy had a statistically significant effect. These results challenged academics to perform alternative analyses that, to demonstrate the lack of effect, relied on extensive exclusion of studies, often to the degree that conclusions were based on only 5-10% of the material, or on virtual data. The ultimate argument against homeopathy is the 'funnel plot' published by Aijing Shang's research group in 2005. However, the funnel plot is flawed when applied to a mixture of diseases, because studies with expected strong treatments effects are, for ethical reasons, powered lower than studies with expected weak or unclear treatment effects. To conclude that homeopathy lacks clinical effect, more than 90% of the available clinical trials had to be disregarded. Alternatively, flawed statistical methods had to be applied. Future meta-analyses should focus on the use of homeopathy in specific diseases or groups of diseases instead of pooling data from all clinical trials. © 2013 S. Karger GmbH, Freiburg.

Graphical augmentations to the funnel plot assess the impact of additional evidence on a meta-analysis.

PubMed

Langan, Dean; Higgins, Julian P T; Gregory, Walter; Sutton, Alexander J

2012-05-01

We aim to illustrate the potential impact of a new study on a meta-analysis, which gives an indication of the robustness of the meta-analysis. A number of augmentations are proposed to one of the most widely used of graphical displays, the funnel plot. Namely, 1) statistical significance contours, which define regions of the funnel plot in which a new study would have to be located to change the statistical significance of the meta-analysis; and 2) heterogeneity contours, which show how a new study would affect the extent of heterogeneity in a given meta-analysis. Several other features are also described, and the use of multiple features simultaneously is considered. The statistical significance contours suggest that one additional study, no matter how large, may have a very limited impact on the statistical significance of a meta-analysis. The heterogeneity contours illustrate that one outlying study can increase the level of heterogeneity dramatically. The additional features of the funnel plot have applications including 1) informing sample size calculations for the design of future studies eligible for inclusion in the meta-analysis; and 2) informing the updating prioritization of a portfolio of meta-analyses such as those prepared by the Cochrane Collaboration. Copyright © 2012 Elsevier Inc. All rights reserved.

An evaluation of rapid methods for monitoring vegetation characteristics of wetland bird habitat

USGS Publications Warehouse

Tavernia, Brian G.; Lyons, James E.; Loges, Brian W.; Wilson, Andrew; Collazo, Jaime A.; Runge, Michael C.

2016-01-01

Wetland managers benefit from monitoring data of sufficient precision and accuracy to assess wildlife habitat conditions and to evaluate and learn from past management decisions. For large-scale monitoring programs focused on waterbirds (waterfowl, wading birds, secretive marsh birds, and shorebirds), precision and accuracy of habitat measurements must be balanced with fiscal and logistic constraints. We evaluated a set of protocols for rapid, visual estimates of key waterbird habitat characteristics made from the wetland perimeter against estimates from (1) plots sampled within wetlands, and (2) cover maps made from aerial photographs. Estimated percent cover of annuals and perennials using a perimeter-based protocol fell within 10 percent of plot-based estimates, and percent cover estimates for seven vegetation height classes were within 20 % of plot-based estimates. Perimeter-based estimates of total emergent vegetation cover did not differ significantly from cover map estimates. Post-hoc analyses revealed evidence for observer effects in estimates of annual and perennial covers and vegetation height. Median time required to complete perimeter-based methods was less than 7 percent of the time needed for intensive plot-based methods. Our results show that rapid, perimeter-based assessments, which increase sample size and efficiency, provide vegetation estimates comparable to more intensive methods.

Encounters with neighbours : current developments of concepts based on recurrence plots and their applications

NASA Astrophysics Data System (ADS)

Marwan, Norbert

2003-09-01

In this work, different aspects and applications of the recurrence plot analysis are presented. First, a comprehensive overview of recurrence plots and their quantification possibilities is given. New measures of complexity are defined by using geometrical structures of recurrence plots. These measures are capable to find chaos-chaos transitions in processes. Furthermore, a bivariate extension to cross recurrence plots is studied. Cross recurrence plots exhibit characteristic structures which can be used for the study of differences between two processes or for the alignment and search for matching sequences of two data series. The selected applications of the introduced techniques to various kind of data demonstrate their ability. Analysis of recurrence plots can be adopted to the specific problem and thus opens a wide field of potential applications. Regarding the quantification of recurrence plots, chaos-chaos transitions can be found in heart rate variability data before the onset of life threatening cardiac arrhythmias. This may be of importance for the therapy of such cardiac arrhythmias. The quantification of recurrence plots allows to study transitions in brain during cognitive experiments on the base of single trials. Traditionally, for the finding of these transitions the averaging of a collection of single trials is needed. Using cross recurrence plots, the existence of an El Niño/Southern Oscillation-like oscillation is traced in northwestern Argentina 34,000 yrs. ago. In further applications to geological data, cross recurrence plots are used for time scale alignment of different borehole data and for dating a geological profile with a reference data set. Additional examples from molecular biology and speech recognition emphasize the suitability of cross recurrence plots. Diese Arbeit beschäftigt sich mit verschiedenen Aspekten und Anwendungen von Recurrence Plots. Nach einer Übersicht über Methoden, die auf Recurrence Plots basieren, werden neue Komplexitätsmaße eingeführt, die geometrische Strukturen in den Recurrence Plots beschreiben. Diese neuen Maße erlauben die Identifikation von Chaos-Chaos-Übergängen in dynamischen Prozessen. In einem weiteren Schritt werden Cross Recurrence Plots eingeführt, mit denen zwei verschiedene Prozesse untersucht werden. Diese bivariate Analyse ermöglicht die Bewertung von Unterschieden zwischen zwei Prozessen oder das Anpassen der Zeitskalen von zwei Zeitreihen. Diese Technik kann auch genutzt werden, um ähnliche Abschnitte in zwei verschiedenen Datenreihen zu finden. Im Anschluß werden diese neuen Entwicklungen auf Daten verschiedener Art angewendet. Methoden, die auf Recurrence Plots basieren, können an die speziellen Probleme angepaßt werden, so daß viele weitere Anwendungen möglich sind. Durch die Anwendung der neu eingeführten Komplexitätsmaße können Chaos-Chaos-Übergänge in Herzschlagdaten vor dem Auftreten einer lebensbedrohlichen Herzrhythmusstörung festgestellt werden, was für die Entwicklung neuer Therapien dieser Herzrhythmusstörungen von Bedeutung sein könnte. In einem weiteren Beispiel, in dem EEG-Daten aus einem kognitiv orientierten Experiment untersucht werden, ermöglichen diese Komplexitätsmaße das Erkennen von spezifischen Reaktionen im Gehirn bereits in Einzeltests. Normalerweise können diese Reaktionen erst durch die Auswertung von vielen Einzeltests erkannt werden. Mit der Hilfe von Cross Recurrence Plots wird die Existenz einer klimatischen Zirkulation, die der heutigen El Niño/ Southern Oscillation sehr ähnlich ist, im Nordwesten Argentiniens vor etwa 34000 Jahren nachgewiesen. Außerdem können mit Cross Recurrence Plots die Zeitskalen verschiedener Bohrlochdaten aufeinander abgeglichen werden. Diese Methode kann auch dazu genutzt werden, ein geologisches Profil mit Hilfe eines Referenzprofiles mit bekannter Zeitskala zu datieren. Weitere Beispiele aus den Gebieten der Molekularbiologie und der Spracherkennung unterstreichen das Potential dieser Methode.

INCA- INTERACTIVE CONTROLS ANALYSIS

NASA Technical Reports Server (NTRS)

Bauer, F. H.

1994-01-01

The Interactive Controls Analysis (INCA) program was developed to provide a user friendly environment for the design and analysis of linear control systems, primarily feedback control systems. INCA is designed for use with both small and large order systems. Using the interactive graphics capability, the INCA user can quickly plot a root locus, frequency response, or time response of either a continuous time system or a sampled data system. The system configuration and parameters can be easily changed, allowing the INCA user to design compensation networks and perform sensitivity analysis in a very convenient manner. A journal file capability is included. This stores an entire sequence of commands, generated during an INCA session into a file which can be accessed later. Also included in INCA are a context-sensitive help library, a screen editor, and plot windows. INCA is robust to VAX-specific overflow problems. The transfer function is the basic unit of INCA. Transfer functions are automatically saved and are available to the INCA user at any time. A powerful, user friendly transfer function manipulation and editing capability is built into the INCA program. The user can do all transfer function manipulations and plotting without leaving INCA, although provisions are made to input transfer functions from data files. By using a small set of commands, the user may compute and edit transfer functions, and then examine these functions by using the ROOT_LOCUS, FREQUENCY_RESPONSE, and TIME_RESPONSE capabilities. Basic input data, including gains, are handled as single-input single-output transfer functions. These functions can be developed using the function editor or by using FORTRAN- like arithmetic expressions. In addition to the arithmetic functions, special functions are available to 1) compute step, ramp, and sinusoid functions, 2) compute closed loop transfer functions, 3) convert from S plane to Z plane with optional advanced Z transform, and 4) convert from Z plane to W plane and back. These capabilities allow the INCA user to perform block diagram algebraic manipulations quickly for functions in the S, Z, and W domains. Additionally, a versatile digital control capability has been included in INCA. Special plane transformations allow the user to easily convert functions from one domain to another. Other digital control capabilities include: 1) totally independent open loop frequency response analyses on a continuous plant, discrete control system with a delay, 2) advanced Z-transform capability for systems with delays, and 3) multirate sampling analyses. The current version of INCA includes Dynamic Functions (which change when a parameter changes), standard filter generation, PD and PID controller generation, incorporation of the QZ-algorithm (function addition, inverse Laplace), and describing functions that allow the user to calculate the gain and phase characteristics of a nonlinear device. The INCA graphic modes provide the user with a convenient means to document and study frequency response, time response, and root locus analyses. General graphics features include: 1) zooming and dezooming, 2) plot documentation, 3) a table of analytic computation results, 4) multiple curves on the same plot, and 5) displaying frequency and gain information for a specific point on a curve. Additional capabilities in the frequency response mode include: 1) a full complement of graphical methods Bode magnitude, Bode phase, Bode combined magnitude and phase, Bode strip plots, root contour plots, Nyquist, Nichols, and Popov plots; 2) user selected plot scaling; and 3) gain and phase margin calculation and display. In the time response mode, additional capabilities include: 1) support for inverse Laplace and inverse Z transforms, 2) support for various input functions, 3) closed loop response evaluation, 4) loop gain sensitivity analyses, 5) intersample time response for discrete systems using the advanced Z transform, and 6) closed loop time response using mixed plane (S, Z, W) operations with delay. A Graphics mode command was added to the current version of INCA, version 3.13, to produce Metafiles (graphic files) of the currently displayed plot. The metafile can be displayed and edited using the QPLOT Graphics Editor and Replotter for Metafiles (GERM) program included with the INCA package. The INCA program is written in Pascal and FORTRAN for interactive or batch execution and has been implemented on a DEC VAX series computer under VMS. Both source code and executable code are supplied for INCA. Full INCA graphics capabilities are supported for various Tektronix 40xx and 41xx terminals; DEC VT graphics terminals; many PC and Macintosh terminal emulators; TEK014 hardcopy devices such as the LN03 Laserprinter; and bit map graphics external hardcopy devices. Also included for the TEK4510 rasterizer users are a multiple copy feature, a wide line feature, and additional graphics fonts. The INCA program was developed in 1985, Version 2.04 was released in 1986, Version 3.00 was released in 1988, and Version 3.13 was released in 1989. An INCA version 2.0X conversion program is included.

Automated haematology analysis to diagnose malaria

PubMed Central

2010-01-01

For more than a decade, flow cytometry-based automated haematology analysers have been studied for malaria diagnosis. Although current haematology analysers are not specifically designed to detect malaria-related abnormalities, most studies have found sensitivities that comply with WHO malaria-diagnostic guidelines, i.e. ≥ 95% in samples with > 100 parasites/μl. Establishing a correct and early malaria diagnosis is a prerequisite for an adequate treatment and to minimizing adverse outcomes. Expert light microscopy remains the 'gold standard' for malaria diagnosis in most clinical settings. However, it requires an explicit request from clinicians and has variable accuracy. Malaria diagnosis with flow cytometry-based haematology analysers could become an important adjuvant diagnostic tool in the routine laboratory work-up of febrile patients in or returning from malaria-endemic regions. Haematology analysers so far studied for malaria diagnosis are the Cell-Dyn®, Coulter® GEN·S and LH 750, and the Sysmex XE-2100® analysers. For Cell-Dyn analysers, abnormal depolarization events mainly in the lobularity/granularity and other scatter-plots, and various reticulocyte abnormalities have shown overall sensitivities and specificities of 49% to 97% and 61% to 100%, respectively. For the Coulter analysers, a 'malaria factor' using the monocyte and lymphocyte size standard deviations obtained by impedance detection has shown overall sensitivities and specificities of 82% to 98% and 72% to 94%, respectively. For the XE-2100, abnormal patterns in the DIFF, WBC/BASO, and RET-EXT scatter-plots, and pseudoeosinophilia and other abnormal haematological variables have been described, and multivariate diagnostic models have been designed with overall sensitivities and specificities of 86% to 97% and 81% to 98%, respectively. The accuracy for malaria diagnosis may vary according to species, parasite load, immunity and clinical context where the method is applied. Future developments in new haematology analysers such as considerably simplified, robust and inexpensive devices for malaria detection fitted with an automatically generated alert could improve the detection capacity of these instruments and potentially expand their clinical utility in malaria diagnosis. PMID:21118557

HIS-based Kaplan-Meier plots--a single source approach for documenting and reusing routine survival information.

PubMed

Breil, Bernhard; Semjonow, Axel; Müller-Tidow, Carsten; Fritz, Fleur; Dugas, Martin

2011-02-16

Survival or outcome information is important for clinical routine as well as for clinical research and should be collected completely, timely and precisely. This information is relevant for multiple usages including quality control, clinical trials, observational studies and epidemiological registries. However, the local hospital information system (HIS) does not support this documentation and therefore this data has to generated by paper based or spreadsheet methods which can result in redundantly documented data. Therefore we investigated, whether integrating the follow-up documentation of different departments in the HIS and reusing it for survival analysis can enable the physician to obtain survival curves in a timely manner and to avoid redundant documentation. We analysed the current follow-up process of oncological patients in two departments (urology, haematology) with respect to different documentation forms. We developed a concept for comprehensive survival documentation based on a generic data model and implemented a follow-up form within the HIS of the University Hospital Muenster which is suitable for a secondary use of these data. We designed a query to extract the relevant data from the HIS and implemented Kaplan-Meier plots based on these data. To re-use this data sufficient data quality is needed. We measured completeness of forms with respect to all tumour cases in the clinic and completeness of documented items per form as incomplete information can bias results of the survival analysis. Based on the form analysis we discovered differences and concordances between both departments. We identified 52 attributes from which 13 were common (e.g. procedures and diagnosis dates) and were used for the generic data model. The electronic follow-up form was integrated in the clinical workflow. Survival data was also retrospectively entered in order to perform survival and quality analyses on a comprehensive data set. Physicians are now able to generate timely Kaplan-Meier plots on current data. We analysed 1029 follow-up forms of 965 patients with survival information between 1992 and 2010. Completeness of forms was 60.2%, completeness of items ranges between 94.3% and 98.5%. Median overall survival time was 16.4 years; median event-free survival time was 7.7 years. It is feasible to integrate survival information into routine HIS documentation such that Kaplan-Meier plots can be generated directly and in a timely manner.

Diversity and Biotic Homogenization of Urban Land-Snail Faunas in Relation to Habitat Types and Macroclimate in 32 Central European Cities

PubMed Central

Horsák, Michal; Lososová, Zdeňka; Čejka, Tomáš; Juřičková, Lucie; Chytrý, Milan

2013-01-01

The effects of non-native species invasions on community diversity and biotic homogenization have been described for various taxa in urban environments, but not for land snails. Here we relate the diversity of native and non-native land-snail urban faunas to urban habitat types and macroclimate, and analyse homogenization effects of non-native species across cities and within the main urban habitat types. Land-snail species were recorded in seven 1-ha plots in 32 cities of ten countries of Central Europe and Benelux (224 plots in total). Each plot represented one urban habitat type characterized by different management and a specific disturbance regime. For each plot, we obtained January, July and mean annual temperature and annual precipitation. Snail species were classified into either native or non-native. The effects of habitat type and macroclimate on the number of native and non-native species were analysed using generalized estimating equations; the homogenization effect of non-native species based on the Jaccard similarity index and homogenization index. We recorded 67 native and 20 non-native species. Besides being more numerous, native species also had much higher beta diversity than non-natives. There were significant differences between the studied habitat types in the numbers of native and non-native species, both of which decreased from less to heavily urbanized habitats. Macroclimate was more important for the number of non-native than native species; however in both cases the effect of climate on diversity was overridden by the effect of urban habitat type. This is the first study on urban land snails documenting that non-native land-snail species significantly contribute to homogenization among whole cities, but both the homogenization and diversification effects occur when individual habitat types are compared among cities. This indicates that the spread of non-native snail species may cause biotic homogenization, but it depends on scale and habitat type. PMID:23936525

Diversity and biotic homogenization of urban land-snail faunas in relation to habitat types and macroclimate in 32 central European cities.

PubMed

Horsák, Michal; Lososová, Zdeňka; Čejka, Tomáš; Juřičková, Lucie; Chytrý, Milan

2013-01-01

The effects of non-native species invasions on community diversity and biotic homogenization have been described for various taxa in urban environments, but not for land snails. Here we relate the diversity of native and non-native land-snail urban faunas to urban habitat types and macroclimate, and analyse homogenization effects of non-native species across cities and within the main urban habitat types. Land-snail species were recorded in seven 1-ha plots in 32 cities of ten countries of Central Europe and Benelux (224 plots in total). Each plot represented one urban habitat type characterized by different management and a specific disturbance regime. For each plot, we obtained January, July and mean annual temperature and annual precipitation. Snail species were classified into either native or non-native. The effects of habitat type and macroclimate on the number of native and non-native species were analysed using generalized estimating equations; the homogenization effect of non-native species based on the Jaccard similarity index and homogenization index. We recorded 67 native and 20 non-native species. Besides being more numerous, native species also had much higher beta diversity than non-natives. There were significant differences between the studied habitat types in the numbers of native and non-native species, both of which decreased from less to heavily urbanized habitats. Macroclimate was more important for the number of non-native than native species; however in both cases the effect of climate on diversity was overridden by the effect of urban habitat type. This is the first study on urban land snails documenting that non-native land-snail species significantly contribute to homogenization among whole cities, but both the homogenization and diversification effects occur when individual habitat types are compared among cities. This indicates that the spread of non-native snail species may cause biotic homogenization, but it depends on scale and habitat type.

Beneath the veil: Plant growth form influences the strength of species richness-productivity relationships in forests

USGS Publications Warehouse

Oberle, B.; Grace, J.B.; Chase, J.M.

2009-01-01

Aim: Species richness has been observed to increase with productivity at large spatial scales, though the strength of this relationship varies among functional groups. In forests, canopy trees shade understorey plants, and for this reason we hypothesize that species richness of canopy trees will depend on macroclimate, while species richness of shorter growth forms will additionally be affected by shading from the canopy. In this study we test for differences in species richness-productivity relationships (SRPRs) among growth forms (canopy trees, shrubs, herbaceous species) in small forest plots. Location: We analysed 231 plots ranging from 34.0?? to 48.3?? N latitude and from 75.0?? to 124.2?? W longitude in the United States. Methods: We analysed data collected by the USDA Forest Inventory and Analysis program for plant species richness partitioned into different growth forms, in small plots. We used actual evapotranspiration as a macroclimatic estimate of regional productivity and calculated the area of light-blocking tissue in the immediate area surrounding plots for an estimate of the intensity of local shading. We estimated and compared SRPRs for different partitions of the species richness dataset using generalized linear models and we incorporated the possible indirect effects of shading using a structural equation model. Results: Canopy tree species richness increased strongly with regional productivity, while local shading primarily explained the variation in herbaceous plant richness. Shrub species richness was related to both regional productivity and local shading. Main conclusions: The relationship between total forest plant species richness and productivity at large scales belies strong effects of local interactions. Counter to the pattern for overall richness, we found that understorey herbaceous plant species richness does not respond to regional productivity gradients, and instead is strongly influenced by canopy density, while shrub species richness is under multivariate control. ?? 2009 Blackwell Publishing.

USING MICROSOFT OFFICE EXCEL® 2007 TO CONDUCT GENERALIZED MATCHING ANALYSES

PubMed Central

Reed, Derek D

2009-01-01

The generalized matching equation is a robust and empirically supported means of analyzing relations between reinforcement and behavior. Unfortunately, no simple task analysis is available to behavior analysts interested in using the matching equation to evaluate data in clinical or applied settings. This technical article presents a task analysis for the use of Microsoft Excel to analyze and plot the generalized matching equation. Using a data-based case example and a step-by-step guide for completing the analysis, these instructions are intended to promote the use of quantitative analyses by researchers with little to no experience in quantitative analyses or the matching law. PMID:20514196

Using Microsoft Office Excel 2007 to conduct generalized matching analyses.

PubMed

Reed, Derek D

2009-01-01

The generalized matching equation is a robust and empirically supported means of analyzing relations between reinforcement and behavior. Unfortunately, no simple task analysis is available to behavior analysts interested in using the matching equation to evaluate data in clinical or applied settings. This technical article presents a task analysis for the use of Microsoft Excel to analyze and plot the generalized matching equation. Using a data-based case example and a step-by-step guide for completing the analysis, these instructions are intended to promote the use of quantitative analyses by researchers with little to no experience in quantitative analyses or the matching law.

Video Analysis of Projectile Motion Using Tablet Computers as Experimental Tools

ERIC Educational Resources Information Center

Klein, P.; Gröber, S.; Kuhn, J.; Müller, A.

2014-01-01

Tablet computers were used as experimental tools to record and analyse the motion of a ball thrown vertically from a moving skateboard. Special applications plotted the measurement data component by component, allowing a simple determination of initial conditions and "g" in order to explore the underlying laws of motion. This experiment…

On measuring bird habitat: influence of observer variability and sample size

Treesearch

William M. Block; Kimberly A. With; Michael L. Morrison

1987-01-01

We studied the effects of observer variability when estimating vegetation characteristics at 75 0.04-ha bird plots. Observer estimates were significantly different for 31 of 49 variables. Multivariate analyses showed significant interobserver differences for five of the seven classes of variables studied. Variable classes included the height, number, and diameter of...

Phonocardiography with a smartphone

NASA Astrophysics Data System (ADS)

Thoms, Lars-Jochen; Colicchia, Giuseppe; Girwidz, Raimund

2017-03-01

When a stethoscope is placed on the chest over the heart, sounds coming from the heart can be directly heard. These sound vibrations can be captured through a microphone and the electrical signals from the transducer can be processed and plotted in a phonocardiogram. Students can easily use a microphone and smartphone to capture and analyse characteristic heart sounds.

Scripting MODFLOW Model Development Using Python and FloPy.

PubMed

Bakker, M; Post, V; Langevin, C D; Hughes, J D; White, J T; Starn, J J; Fienen, M N

2016-09-01

Graphical user interfaces (GUIs) are commonly used to construct and postprocess numerical groundwater flow and transport models. Scripting model development with the programming language Python is presented here as an alternative approach. One advantage of Python is that there are many packages available to facilitate the model development process, including packages for plotting, array manipulation, optimization, and data analysis. For MODFLOW-based models, the FloPy package was developed by the authors to construct model input files, run the model, and read and plot simulation results. Use of Python with the available scientific packages and FloPy facilitates data exploration, alternative model evaluations, and model analyses that can be difficult to perform with GUIs. Furthermore, Python scripts are a complete, transparent, and repeatable record of the modeling process. The approach is introduced with a simple FloPy example to create and postprocess a MODFLOW model. A more complicated capture-fraction analysis with a real-world model is presented to demonstrate the types of analyses that can be performed using Python and FloPy. © 2016, National Ground Water Association.

Next Generation Quality: Assessing the Physician in Clinical History Completeness and Diagnostic Interpretations Using Funnel Plots and Normalized Deviations Plots in 3,854 Prostate Biopsies.

PubMed

Bonert, Michael; El-Shinnawy, Ihab; Carvalho, Michael; Williams, Phillip; Salama, Samih; Tang, Damu; Kapoor, Anil

2017-01-01

Observational data and funnel plots are routinely used outside of pathology to understand trends and improve performance. Extract diagnostic rate (DR) information from free text surgical pathology reports with synoptic elements and assess whether inter-rater variation and clinical history completeness information useful for continuous quality improvement (CQI) can be obtained. All in-house prostate biopsies in a 6-year period at two large teaching hospitals were extracted and then diagnostically categorized using string matching, fuzzy string matching, and hierarchical pruning. DRs were then stratified by the submitting physicians and pathologists. Funnel plots were created to assess for diagnostic bias. 3,854 prostate biopsies were found and all could be diagnostically classified. Two audits involving the review of 700 reports and a comparison of the synoptic elements with the free text interpretations suggest a categorization error rate of <1%. Twenty-seven pathologists each read >40 cases and together assessed 3,690 biopsies. There was considerable inter-rater variability and a trend toward more World Health Organization/International Society of Urologic Pathology Grade 1 cancers in older pathologists. Normalized deviations plots, constructed using the median DR, and standard error can elucidate associated over- and under-calls for an individual pathologist in relation to their practice group. Clinical history completeness by submitting medical doctor varied significantly (100% to 22%). Free text data analyses have some limitations; however, they could be used for data-driven CQI in anatomical pathology, and could lead to the next generation in quality of care.

Effects of tree-to-tree variations on sap flux-based transpiration estimates in a forested watershed

NASA Astrophysics Data System (ADS)

Kume, Tomonori; Tsuruta, Kenji; Komatsu, Hikaru; Kumagai, Tomo'omi; Higashi, Naoko; Shinohara, Yoshinori; Otsuki, Kyoichi

2010-05-01

To estimate forest stand-scale water use, we assessed how sample sizes affect confidence of stand-scale transpiration (E) estimates calculated from sap flux (Fd) and sapwood area (AS_tree) measurements of individual trees. In a Japanese cypress plantation, we measured Fd and AS_tree in all trees (n = 58) within a 20 × 20 m study plot, which was divided into four 10 × 10 subplots. We calculated E from stand AS_tree (AS_stand) and mean stand Fd (JS) values. Using Monte Carlo analyses, we examined potential errors associated with sample sizes in E, AS_stand, and JS by using the original AS_tree and Fd data sets. Consequently, we defined optimal sample sizes of 10 and 15 for AS_stand and JS estimates, respectively, in the 20 × 20 m plot. Sample sizes greater than the optimal sample sizes did not decrease potential errors. The optimal sample sizes for JS changed according to plot size (e.g., 10 × 10 m and 10 × 20 m), while the optimal sample sizes for AS_stand did not. As well, the optimal sample sizes for JS did not change in different vapor pressure deficit conditions. In terms of E estimates, these results suggest that the tree-to-tree variations in Fd vary among different plots, and that plot size to capture tree-to-tree variations in Fd is an important factor. This study also discusses planning balanced sampling designs to extrapolate stand-scale estimates to catchment-scale estimates.

Measures and Relative Motions of Some Mostly F. G. W. Struve Doubles

NASA Astrophysics Data System (ADS)

Wiley, E. O.

2012-04-01

Measures of 59 pairs of double stars with long observational histories using "lucky imaging" techniques are reported. Relative motions of 59 pairs are investigated using histories of observation, scatter plots of relative motion, ordinary least-squares (OLS) and total proper motion analyses performed in "R," an open source programming language. A scatter plot of the coefficient of determinations derived from the OLS y|epoch and OLS x|epoch clearly separates common proper motion pairs from optical pairs and what are termed "long-period binary candidates." Differences in proper motion separate optical pairs from long-term binary candidates. An Appendix is provided that details how to use known rectilinear pairs as calibration pairs for the program REDUC.

Visualizing dispersive features in 2D image via minimum gradient method

DOE Office of Scientific and Technical Information (OSTI.GOV)

He, Yu; Wang, Yan; Shen, Zhi -Xun

Here, we developed a minimum gradient based method to track ridge features in a 2D image plot, which is a typical data representation in many momentum resolved spectroscopy experiments. Through both analytic formulation and numerical simulation, we compare this new method with existing DC (distribution curve) based and higher order derivative based analyses. We find that the new method has good noise resilience and enhanced contrast especially for weak intensity features and meanwhile preserves the quantitative local maxima information from the raw image. An algorithm is proposed to extract 1D ridge dispersion from the 2D image plot, whose quantitative applicationmore » to angle-resolved photoemission spectroscopy measurements on high temperature superconductors is demonstrated.« less

Visualizing dispersive features in 2D image via minimum gradient method

DOE PAGES

He, Yu; Wang, Yan; Shen, Zhi -Xun

2017-07-24

Here, we developed a minimum gradient based method to track ridge features in a 2D image plot, which is a typical data representation in many momentum resolved spectroscopy experiments. Through both analytic formulation and numerical simulation, we compare this new method with existing DC (distribution curve) based and higher order derivative based analyses. We find that the new method has good noise resilience and enhanced contrast especially for weak intensity features and meanwhile preserves the quantitative local maxima information from the raw image. An algorithm is proposed to extract 1D ridge dispersion from the 2D image plot, whose quantitative applicationmore » to angle-resolved photoemission spectroscopy measurements on high temperature superconductors is demonstrated.« less

Green leaf phenology at Landsat resolution: scaling from the plot to satellite

NASA Astrophysics Data System (ADS)

Fisher, J. I.; Mustard, J. F.; Vadeboncour, M.

2005-12-01

Despite the large number of in situ, plot-level phenological measurements and satellite-derived phenological studies, there has been little success to date in merging these records temporally or spatially. In particular, while most phenological patterns and trends derived from satellites appear realistic and coherent, they may not reflect spatial and temporal patterns at the plot level. An obvious explanation is the drastic scale difference from plot-level to most satellite observations. In this research, we bridge this scale gap through higher resolution satellite records (Landsat) and quantify the accuracy of satellite-derived metrics with direct field measurements. We compiled fifty-seven Landsat scenes from southern New England (P12 R51) from 1984 to 2002. Green vegetation areal abundance for each scene was derived from spectral mixture analysis and a single set of endmembers. The leaf area signal was fit with a logistic-growth simulating sigmoid curve to derive phenological markers (half-maximum leaf-onset and offset). Spring leaf-onset dates in homogenous stands of deciduous forests displayed significant and persistent local variability. The local variability was validated with multiple springtime ground observations (r2 = 0.91). The highest degree of verified small-scale variation occurred where contiguous forests displayed leaf-onset gradients of 10-14 days over short distances (<500 m). These dramatic gradients, of a similar magnitude to differences in leaf-onset from MD to MA, occur in of low-relief (<40 m) upland regions. The patterns suggest that microclimates resulting from springtime cold-air drainage may be influential in governing the start of leaf growth. These microclimates may be of crucial importance in interpreting in situ records and interpolating phenology from satellite data. Regional patterns from the Landsat analyses suggest topographic, coastal, and land-use controls on phenology. For example, our results indicate that deciduous forests in the Providence, RI metropolitan area leaf out 5-7 days earlier than comparable rural areas. In preliminary work, we validated the Landsat-derived metrics with similar analyses of MODIS and AVHRR, and demonstrate that aggregating diverse local phenologies into coarse grids may convolute interpretations. Despite these complications, the platform-independent curve-fit methodology may be extended across platforms and field data. The methodologically consistent approach, in tandem with Landsat data, allows us to effectively scale between plot and satellite phenological observations.

Reproducible research in palaeomagnetism

NASA Astrophysics Data System (ADS)

Lurcock, Pontus; Florindo, Fabio

2015-04-01

The reproducibility of research findings is attracting increasing attention across all scientific disciplines. In palaeomagnetism as elsewhere, computer-based analysis techniques are becoming more commonplace, complex, and diverse. Analyses can often be difficult to reproduce from scratch, both for the original researchers and for others seeking to build on the work. We present a palaeomagnetic plotting and analysis program designed to make reproducibility easier. Part of the problem is the divide between interactive and scripted (batch) analysis programs. An interactive desktop program with a graphical interface is a powerful tool for exploring data and iteratively refining analyses, but usually cannot operate without human interaction. This makes it impossible to re-run an analysis automatically, or to integrate it into a larger automated scientific workflow - for example, a script to generate figures and tables for a paper. In some cases the parameters of the analysis process itself are not saved explicitly, making it hard to repeat or improve the analysis even with human interaction. Conversely, non-interactive batch tools can be controlled by pre-written scripts and configuration files, allowing an analysis to be 'replayed' automatically from the raw data. However, this advantage comes at the expense of exploratory capability: iteratively improving an analysis entails a time-consuming cycle of editing scripts, running them, and viewing the output. Batch tools also tend to require more computer expertise from their users. PuffinPlot is a palaeomagnetic plotting and analysis program which aims to bridge this gap. First released in 2012, it offers both an interactive, user-friendly desktop interface and a batch scripting interface, both making use of the same core library of palaeomagnetic functions. We present new improvements to the program that help to integrate the interactive and batch approaches, allowing an analysis to be interactively explored and refined, then saved as a self-contained configuration which can be re-run without human interaction. PuffinPlot can thus be used as a component of a larger scientific workflow, integrated with workflow management tools such as Kepler, without compromising its capabilities as an exploratory tool. Since both PuffinPlot and the platform it runs on (Java) are Free/Open Source software, even the most fundamental components of an analysis can be verified and reproduced.

Relating structural growth environment to white spruce sapling establishment at the Forest-Tundra Ecotone

NASA Astrophysics Data System (ADS)

Maguire, A.; Boelman, N.; Griffin, K. L.; Jensen, J.; Hiers, E.; Johnson, D. M.; Vierling, L. A.; Eitel, J.

2017-12-01

The effect of climate change on treeline position at the latitudinal Forest-Tundra ecotone (FTE) is poorly understood. While the FTE is expansive (stretching 13,000 km acros the panarctic), understanding relationships between climate and tree function may depend on very fine scale processes. High resolution tools are therefore needed to appropriately characterize the leading (northernmost) edge of the FTE. We hypothesized that microstructural metrics obtainable from lidar remote sensing may explain variation in the physical growth environment that governs sapling establishment. To test our hypothesis, we used terrestrial laser scanning (TLS) to collect highly spatially resolved 3-D structural information of white spruce (Picea glauca) saplings and their aboveground growth environment at the leading edge of a FTE in northern Alaska and Northwest Territories, Canada. Coordinates of sapling locations were extracted from the 3-D TLS data. Within each sampling plot, 20 sets of coordinates were randomly selected from regions where no saplings were present. Ground roughness, canopy roughness, average aspect, average slope, average curvature, wind shelter index, and wetness indexwere extracted from point clouds within a variable radius from all coordinates. Generalized linear models (GLM) were fit to determine which microstructural metrics were most strongly associated with sapling establishment. Preliminary analyses of three plots suggest that vegetation roughness, wetness index, ground roughness, and slope were the most important terrain metrics governing sapling presence (Figure 1). Comprehensive analyses will include eight plots and GLMs optimized for scale at which structural parameters affect sapling establishment. Spatial autocorrelation of sample locations will be accounted for in models. Because these analyses address how the physical growth environment affects sapling establishment, model outputs will provide information for improving understanding of the ecological processes that regulate treeline dynamics. Moreover, establishing relationships between the remotely sensed structural growth environment and tree establishment provides new ways of spatially scaling across larger areas to study ecological change at the FTE.

Measures of Heart Rate Variability in 24-h ECGs Depend on Age but Not Gender of Healthy Children

PubMed Central

Bobkowski, Waldemar; Stefaniak, Magdalena E.; Krauze, Tomasz; Gendera, Katarzyna; Wykretowicz, Andrzej; Piskorski, Jaroslaw; Guzik, Przemyslaw

2017-01-01

Many methods computing heart rate variability (HRV) have been applied in studies in children. Not all of these methods have a comprehensive physiological interpretation, and not all of studies are in agreement with the Task Force Standards on HRV from 1996, and the New Joint Position Statement on the advances of HRV from 2015. The study aim was to analyse HRV in the 24-h ECGs of healthy children by the Poincare plots and Lomb-Scargle periodograms, and to follow proper HRV recommendations. Additionally, we investigated the associations between age, children's sex and measured HRV indices. One hundred healthy children, aged 3–18 underwent 24-h ECG Holter monitoring. HRV was analyzed by the Poincaré plots and spectral by Lomb-Scargle periodograms of RR intervals. The Mann-Whitney test was used to compare sex differences in HRV, the van Elteren's test was used to correct for the age-gender interaction, and non-parametric Spearman correlation was applied to analyse the association between age and HRV indices. None of the HRV measures differed significantly between boys and girls. None of the HRV indices was modified by the age-gender interaction. There were statistically significant associations of age with measures of ultra-low (rho = 0.42; p < 0.0001), very low (rho = 0.35; p = 00004) and low (rho = 0.30; p = 0.0028) frequency powers, the ratio of the low to high frequency power (rho = 0.38; p = 0.0001), indices of long-term (SD2; rho = 0.37; p = 0.0002) and total (SDNN; rho = 0.33; p = 0.0008) HRV, and the contribution of the long-term HRV to total HRV (CL; rho = 0.32; p = 0.0012). In general, HRV parameters derived from the analyses of Poincaré plots and Lomb-Scargle periodograms appear not to be affected by gender, however, most of them increase with age in the 24-h ECG recordings in healthy children. PMID:28572771

A NEO population generation and observation simulation software tool

NASA Astrophysics Data System (ADS)

Müller, Sven; Gelhaus, Johannes; Hahn, Gerhard; Franco, Raffaella

One of the main targets of ESA's Space Situational Awareness (SSA) program is to build a wide knowledge base about objects that can potentially harm Earth (Near-Earth Objects, NEOs). An important part of this effort is to create the Small Bodies Data Centre (SBDC) which is going to aggregate measurement data from a fully-integrated NEO observation sensor network. Until this network is developed, artificial NEO measurement data is needed in order to validate SBDC algorithms. Moreover, to establish a functioning NEO observation sensor network, it has to be determined where to place sensors, what technical requirements have to be met in order to be able to detect NEOs and which observation strategies work the best. Because of this, a sensor simulation software was needed. This paper presents a software tool which allows users to create and analyse NEO populations and to simulate and analyse population observations. It is a console program written in Fortran and comes with a Graphical User Interface (GUI) written in Java and C. The tool can be distinguished into the components ``Population Generator'' and ``Observation Simulator''. The Population Generator component is responsible for generating and analysing a NEO population. Users can choose between creating fictitious (random) and synthetic populations. The latter are based on one of two models describing the orbital and size distribution of observed NEOs: The existing socalled ``Bottke Model'' (Bottke et al. 2000, 2002) and the new ``Granvik Model'' (Granvik et al. 2014, in preparation) which has been developed in parallel to the tool. Generated populations can be analysed by defining 2D, 3D and scatter plots using various NEO attributes. As a result, the tool creates the appropiate files for the plotting tool ``gnuplot''. The tool's Observation Simulator component yields the Observation Simulation and Observation Analysis functions. Users can define sensor systems using ground- or space-based locations as well as optical or radar sensors and simulate observation campaigns. The tool outputs field-of-view crossings and actual detections of the selected NEO population objects. Using the Observation Analysis users are able to process and plot the results of the Observation Simulation. In order to enable end-users to handle the tool in a user-intuitive and comfortable way, a GUI has been created based on the modular Eclipse Rich Client Platform (RCP) technology. Through the GUI users can easily enter input data for the tool, execute it and view its output data in a clear way. Additionally, the GUI runs gnuplot to create plot pictures and presents them to the user. Furthermore, users can create projects to organise executions of the tool.

Spectral characteristics and the extent of paleosols of the Palouse formation

NASA Technical Reports Server (NTRS)

Frazier, B. E.; Busacca, A.; Cheng, Y.; Wherry, D.; Hart, J.; Gill, S.

1986-01-01

Spectral relationships were investigated for several bare soil fields which were in summer fallow rotation on the date of the imagery. Printouts of each band were examined and compared to aerial photography. Bands with dissimilar reflectance patterns for known areas were then combined using ratio techniques which were proven useful in other studies (Williams, 1983). Selected ratios were Thematic Mapper (TM) 1/TM4, TM3/TM4, and TM5/TM4. Cluster analyses and Baysian and Fastclass classifier images were produced using the three ratio images. Plots of cluster analysis outputs revealed distinct groupings of reflectance data representing green crops, ripened crops, soil and green plants, and bare soil. Bare soil was represented by a line of clusters on plots of the ratios TM5/TM4 and TM3/TM4. The soil line was investigated further to determine factors involved in the distributin of clusters alone the line. The clusters representing the bare soil line were also studied by plotting the Tm5/TM4, TM1/TM4 dimension. A total of 76 soil samples were gathered and analyzed for organic carbon.

Influence of long-term repeated prescribed burning on mycelial communities of ectomycorrhizal fungi.

PubMed

Bastias, Brigitte A; Xu, Zhihong; Cairney, John W G

2006-01-01

To demonstrate the efficacy of direct DNA extraction from hyphal ingrowth bags for community profiling of ectomycorrhizal (ECM) mycelia in soil, we applied the method to investigate the influence of long-term repeated prescribed burning on an ECM fungal community. DNA was extracted from hyphal ingrowth bags buried in forest plots that received different prescribed burning treatments for 30 yr, and denaturing gradient gel electrophoresis (DGGE) profiles of partial fungal rDNA internal transcribed spacer (ITS) regions were compared. Restriction fragment length polymorphism (RFLP) and sequence analyses were also used to compare clone assemblages between the treatments. The majority of sequences derived from the ingrowth bags were apparently those of ECM fungi. DGGE profiles for biennially burned plots were significantly different from those of quadrennially burned and unburned control plots. Analysis of clone assemblages indicated that this reflected altered ECM fungal community composition. The results indicate that hyphal ingrowth bags represent a useful method for investigation of ECM mycelial communities, and that frequent long-term prescribed burning can influence below-ground ECM fungal communities.

Dimensional differences for evaluating the quality of footwear fit.

PubMed

Witana, Channa P; Feng, Jiejian; Goonetilleke, Ravindra S

2004-10-10

Very few standards exist for fitting products to people. Footwear is a noteworthy example. This study is an attempt to evaluate the quality of footwear fit using two-dimensional foot outlines. Twenty Hong Kong Chinese students participated in an experiment that involved three pairs of dress shoes and one pair of athletic shoes. The participants' feet were scanned using a commercial laser scanner, and each participant wore and rated the fit of each region of each shoe. The shoe lasts were also scanned and were used to match the foot scans with the last scans. The ANOVA showed significant (p < 0.05) differences among the four pairs of shoes for the overall, fore-foot and rear-foot fit ratings. There were no significant differences among shoes for mid-foot fit rating. These perceived differences were further analysed after matching the 2D outlines of both last and feet. The point-wise dimensional difference between foot and shoe outlines were computed and analysed after normalizing with foot perimeter. The dimensional difference (DD) plots along the foot perimeter showed that fore-foot fit was strongly correlated (R(2) > 0.8) with two of the minimums in the DD-plot while mid-foot fit was strongly correlated (R(2) > 0.9) with the dimensional difference around the arch region and a point on the lateral side of the foot. The DD-plots allow the designer to determine the critical locations that may affect footwear fit in addition to quantifying the nature of misfit so that design changes to shape and material may be possible.

Identification and reproducibility of dietary patterns in a Danish cohort: the Inter99 study.

PubMed

Lau, Cathrine; Glümer, Charlotte; Toft, Ulla; Tetens, Inge; Carstensen, Bendix; Jørgensen, Torben; Borch-Johnsen, Knut

2008-05-01

We aimed to identify dietary patterns in a Danish adult population and assess the reproducibility of the dietary patterns identified. Baseline data of 3,372 women and 3,191 men (30-60 years old) from the population-based survey Inter99 was used. Food intake, assessed by a FFQ, was aggregated into thirty-four separate food groups. Dietary patterns were identified by principal component analysis. Confirmatory factor analysis and Bland Altman plots were used to assess the reproducibility of the dietary patterns identified. The Bland Altman plots were used as an alternative and new method. Two factors were retained for both women and men, which accounted for 15.1-17.4 % of the total variation. The 'Traditional' pattern was characterised by high loadings ( > or = 0.40) on paté or high-fat meat for sandwiches, mayonnaise salads, red meat, potatoes, butter and lard, low-fat fish, low-fat meat for sandwiches, and sauces. The 'Modern' pattern was characterised by high loadings on vegetables, fruit, mixed vegetable dishes, vegetable oil and vinegar dressing, poultry, and pasta, rice and wheat kernels. Small differences were observed between patterns identified for women and men. The root mean square error approximation from the confirmatory factor analysis was 0.08. The variation observed from the Bland Altman plots of factors from explorative v. confirmative analyses and explorative analyses from two sub-samples was between 18.8 and 47.7 %. Pearson's correlation was >0.89 (P < 0.0001). The reproducibility was better for women than for men. We conclude that the 'Traditional' and 'Modern' dietary patterns identified were reproducible.

Vegetation classification, mapping, and monitoring at Voyageurs National Park, Minnesota: An application of the U.S. National Vegetation Classification

USGS Publications Warehouse

Faber-Langendoen, D.; Aaseng, N.; Hop, K.; Lew-Smith, M.; Drake, J.

2007-01-01

Question: How can the U.S. National Vegetation Classification (USNVC) serve as an effective tool for classifying and mapping vegetation, and inform assessments and monitoring? Location: Voyageurs National Park, northern Minnesota, U.S.A and environs. The park contains 54 243 ha of terrestrial habitat in the sub-boreal region of North America. Methods: We classified and mapped the natural vegetation using the USNVC, with 'alliance' and 'association' as base units. We compiled 259 classification plots and 1251 accuracy assessment test plots. Both plot and type ordinations were used to analyse vegetation and environmental patterns. Color infrared aerial photography (1:15840 scale) was used for mapping. Polygons were manually drawn, then transferred into digital form. Classification and mapping products are stored in publicly available databases. Past fire and logging events were used to assess distribution of forest types. Results and Discussion: Ordination and cluster analyses confirmed 49 associations and 42 alliances, with three associations ranked as globally vulnerable to extirpation. Ordination provided a useful summary of vegetation and ecological gradients. Overall map accuracy was 82.4%. Pinus banksiana - Picea mariana forests were less frequent in areas unburned since the 1930s. Conclusion: The USNVC provides a consistent ecological tool for summarizing and mapping vegetation. The products provide a baseline for assessing forests and wetlands, including fire management. The standardized classification and map units provide local to continental perspectives on park resources through linkages to state, provincial, and national classifications in the U.S. and Canada, and to NatureServe's Ecological Systems classification. ?? IAVS; Opulus Press.

GRAPHIC REANALYSIS OF THE TWO NINDS-TPA TRIALS CONFIRMS SUBSTANTIAL TREATMENT BENEFIT

PubMed Central

Saver, Jeffrey L.; Gornbein, Jeffrey; Starkman, Sidney

2010-01-01

Background of Comment/Review Multiple statistical analyses of the two NINDS-TPA Trials have confirmed study findings of benefit of fibrinolytic therapy. A recent graphic analysis departed from best practices in the visual display of quantitative information by failing to take into account the skewed functional importance NIH Stroke Scale raw scores and by scaling change axes at up to twenty times the range achievable by individual patients. Methods Using the publicly available datasets of the 2 NINDS-TPA Trials, we generated a variety of figures appropriate to the characteristics of acute stroke trial data. Results A diverse array of figures all visually delineated substantial benefits of fibrinolytic therapy, including: bar charts of normalized gain and loss; stacked bar, bar, and matrix plots of clinically relevant ordinal ranks; a time series stacked line plot of continuous scale disability weights; and line plot, bubble chart, and person icon array graphs of joint outcome table analysis. The achievable change figure showed substantially greater improvement among TPA than placebo patients, median 66.7% (IQR 0–92.0) vs 50.0% (IQR −7.1 – 80.0), p=0.003. Conclusions On average, under 3 hour patients treated with TPA recovered two-thirds while placebo patients improved only half of the way towards fully normal. Graphical analyses of the two NINDS-TPA trials, when performed according to best practices, is a useful means of conveying details about patient response to therapy not fully delineated by summary statistics, and confirms a valuable treatment benefit of under 3 hour fibrinolytic therapy in acute stroke. PMID:20829518

Improved discrimination among similar agricultural plots using red-and-green-based pseudo-colour imaging

NASA Astrophysics Data System (ADS)

Doi, Ryoichi

2016-04-01

The effects of a pseudo-colour imaging method were investigated by discriminating among similar agricultural plots in remote sensing images acquired using the Airborne Visible/Infrared Imaging Spectrometer (Indiana, USA) and the Landsat 7 satellite (Fergana, Uzbekistan), and that provided by GoogleEarth (Toyama, Japan). From each dataset, red (R)-green (G)-R-G-blue yellow (RGrgbyB), and RGrgby-1B pseudo-colour images were prepared. From each, cyan, magenta, yellow, key black, L*, a*, and b* derivative grayscale images were generated. In the Airborne Visible/Infrared Imaging Spectrometer image, pixels were selected for corn no tillage (29 pixels), corn minimum tillage (27), and soybean (34) plots. Likewise, in the Landsat 7 image, pixels representing corn (73 pixels), cotton (110), and wheat (112) plots were selected, and in the GoogleEarth image, those representing soybean (118 pixels) and rice (151) were selected. When the 14 derivative grayscale images were used together with an RGB yellow grayscale image, the overall classification accuracy improved from 74 to 94% (Airborne Visible/Infrared Imaging Spectrometer), 64 to 83% (Landsat), or 77 to 90% (GoogleEarth). As an indicator of discriminatory power, the kappa significance improved 1018-fold (Airborne Visible/Infrared Imaging Spectrometer) or greater. The derivative grayscale images were found to increase the dimensionality and quantity of data. Herein, the details of the increases in dimensionality and quantity are further analysed and discussed.

Structure, diversity, and biophysical properties of old-growth forestsin the Klamath region, USA

USGS Publications Warehouse

van Mantgem, Phillip J.; Starr, Daniel A

2015-01-01

The diverse old-growth forests in Klamath region of northern California and southern Oregon provide valuable ecosystem services (e.g., maintaining watersheds, wildlife habitat, recreation), but may be vulnerable to a wide range of stressors, including invasive species, disrupted disturbance regimes, and climatic change. Yet our understanding of how forest structure in the Klamath region relates to the current physical environment is limited. Here we provide present-day benchmarks for old-growth forest structure across a climatic gradient ranging from coastal to dry interior sites. We established 16 large (1 ha) forest plots where all stems > 5 cm in diameter were identified to species and mapped. Climate across these sites was highly variable, with estimated actual evapotranspiration correlated to several basic measures of forest structure, including plot basal area, stem size-class inequality, tree species diversity and, to a lesser extent, tree species richness. Analyses of the spatial arrangement of stems indicated a high degree of non-uniformity, with 75% of plots showing significant stem clumping at small spatial scales (0 to 10 m). Downscaled predictions of future site water balance suggest changes will be dominated by rapidly increasing climatic water deficit (D, a biologically meaningful index of drought). While these plots give a picture of current conditions, continued monitoring of these stands is needed to describe forest dynamics and to detect forest responses to ongoing and future stressors.

Sustainability of High Intensity Forest Management with Respect to Water QuaIity and Site Nutrient Reserves

Treesearch

Virginia R. Tolbert; Carl C. Trettin; Dale W. Johnson; John W. Parsons; Allan E. Houston; David A. Mays

2001-01-01

Ensuring sustainability of intensively managed woody crops requires determining soil and water quality effects using a combination of field data and modeling projections. Plot- and catchrnent-scale research, models, and meta-analyses are addressing nutrient availability, site quality, and measures to increase short-rotation woody crop (SRWC) productivity and site...

Needs and Opportunities for Longleaf Pine Ecosystem Restoration in Florida

Treesearch

Kenneth W. Outcalt

1997-01-01

Data from permanent plots measured periodically by Forest Inventory and Analyses of the Southern Research Station, USDA Forest Service shows a continuing decline in the longleaf pine (Pinus pulustris Mill,) ecosystem in Florida from 1987 to 1995. Conversion to some other forest type resulted in a net loss of 58,000 ha natural stands of longleaf pine...

Climatic stress increases forest fire severity across the western United States

Treesearch

Phillip J. van Mantgem; Jonathan C.B. Nesmith; MaryBeth Keifer; Eric E. Knapp; Alan Flint; Lorriane Flint

2013-01-01

Pervasive warming can lead to chronic stress on forest trees, which may contribute to mortality resulting from fire-caused injuries. Longitudinal analyses of forest plots from across the western US show that high pre-fire climatic water deficit was related to increased post-fire tree mortality probabilities. This relationship between climate and fire was present after...

An unconventional approach to ecosystem unit classification in western North Carolina, USA

Treesearch

W. Henry McNab; Sara A. Browning; Steven A. Simon; Penelope E. Fouts

1999-01-01

The authors used an unconventional combination of data transformation and multivariate analyses to reduce subjectivity in identification of ecosystem units in a mountainous region of western North Carolina, USA. Vegetative cover and environmental variables were measured on 79 stratified, randomly located, 0.1 ha sample plots in a 4000 ha watershed. Binary...

Geology and ground-water resources of Outagamie County, Wisconsin

USGS Publications Warehouse

LeRoux, E.F.

1957-01-01

The ground water differs greatly in chemical quality from well to well, but it is generally a very hard calcium magnesium bicarbonate water, some of it high in iron. To aid in determining the source of well waters, 22 chemical analyses were plotted on a logarithmic diagram to obtain characteristic patterns for waters from several geologic sources.

Site and stand factors affecting height growth curves of longleaf pine plantations

Treesearch

William D. Boyer

1981-01-01

Abstract Some factors related to the form of height-over- age curves in longleaf pine plantations were identified from analyses of 660 periodically remeasured plots.Seventy percent of the variation among 32 plantations in form the growth curve was accounted for by stratifying planting sites into old fields, mechanically prepared and unprepared cut-...

A Multinomial Logit Approach to Estimating Regional Inventories by Product Class

Treesearch

Lawrence Teeter; Xiaoping Zhou

1998-01-01

Current timber inventory projections generally lack information on inventory by product classes. Most models available for inventory projection and linked to supply analyses are limited to projecting aggregate softwood and hardwood. The objective of this research is to develop a methodology to distribute the volume on each FIA survey plot to product classes and...

Quantifying the abundance of co-occurring conifers along Inland Northwest (USA) climate gradients

Treesearch

Gerald E. Rehfeldt; Dennis E. Ferguson; Nicholas L. Crookston

2008-01-01

The occurrence and abundance of conifers along climate gradients in the Inland Northwest (USA) was assessed using data from 5082 field plots, 81% of which were forested. Analyses using the Random Forests classification tree revealed that the sequential distribution of species along an altitudinal gradient could be predicted with reasonable accuracy from a single...

Seismic analysis of the Mirror Fusion Test Facility: soil structure interaction analyses of the Axicell vacuum vessel. Revision 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maslenikov, O.R.; Mraz, M.J.; Johnson, J.J.

1986-03-01

This report documents the seismic analyses performed by SMA for the MFTF-B Axicell vacuum vessel. In the course of this study we performed response spectrum analyses, CLASSI fixed-base analyses, and SSI analyses that included interaction effects between the vessel and vault. The response spectrum analysis served to benchmark certain modeling differences between the LLNL and SMA versions of the vessel model. The fixed-base analysis benchmarked the differences between analysis techniques. The SSI analyses provided our best estimate of vessel response to the postulated seismic excitation for the MFTF-B facility, and included consideration of uncertainties in soil properties by calculating responsemore » for a range of soil shear moduli. Our results are presented in this report as tables of comparisons of specific member forces from our analyses and the analyses performed by LLNL. Also presented are tables of maximum accelerations and relative displacements and plots of response spectra at various selected locations.« less

Relations of alpine plant communities across environmental gradients: Multilevel versus multiscale analyses

USGS Publications Warehouse

Malanson, George P.; Zimmerman, Dale L.; Kinney, Mitch; Fagre, Daniel B.

2017-01-01

Alpine plant communities vary, and their environmental covariates could influence their response to climate change. A single multilevel model of how alpine plant community composition is determined by hierarchical relations is compared to a separate examination of those relations at different scales. Nonmetric multidimensional scaling of species cover for plots in four regions across the Rocky Mountains created dependent variables. Climate variables are derived for the four regions from interpolated data. Plot environmental variables are measured directly and the presence of thirty-seven site characteristics is recorded and used to create additional independent variables. Multilevel and best subsets regressions are used to determine the strength of the hypothesized relations. The ordinations indicate structure in the assembly of plant communities. The multilevel analyses, although revealing significant relations, provide little explanation; of the site variables, those related to site microclimate are most important. In multiscale analyses (whole and separate regions), different variables are better explanations within the different regions. This result indicates weak environmental niche control of community composition. The weak relations of the structure in the patterns of species association to the environment indicates that either alpine vegetation represents a case of the neutral theory of biogeography being a valid explanation or that it represents disequilibrium conditions. The implications of neutral theory and disequilibrium explanations are similar: Response to climate change will be difficult to quantify above equilibrium background turnover.

Data from a solute transport experiment in the Leviathan Mine drainage, Alpine County, California, October 1982

USGS Publications Warehouse

Flint, M.R.; Bencala, K.E.; Zellweger, G.W.; Hammermeister, D.P.

1985-01-01

A twenty-four hour injection of chloride and sodium was made into Leviathan Creek, Alpine County, California to aid interpretation of the coupled interactions between physical transport processes and geochemical reactions. Leviathan Creek was chosen because it receives acid mine drainage from Leviathan Mine, an abandoned open-pit sulfur mine. Water samples were collected at 15 sites along a 4.39 kilometer reach and analyzed for chloride, sodium, sulfate and fluoride. Dissolved concentrations are presented in tabular format and time-series plots. Duplicate samples were analyzed by two laboratories: the Central Laboratory, Denver, Colorado and a research laboratory in Menlo Park, California. A tabular comparison of the analyses and plots of the differences between the two laboratories is presented. Hydrographs and instantaneous discharge measurements are included. (USGS)

Alsep data processing: How we processed Apollo Lunar Seismic Data

NASA Technical Reports Server (NTRS)

Latham, G. V.; Nakamura, Y.; Dorman, H. J.

1979-01-01

The Apollo lunar seismic station network gathered data continuously at a rate of 3 x 10 to the 8th power bits per day for nearly eight years until the termination in September, 1977. The data were processed and analyzed using a PDP-15 minicomputer. On the average, 1500 long-period seismic events were detected yearly. Automatic event detection and identification schemes proved unsuccessful because of occasional high noise levels and, above all, the risk of overlooking unusual natural events. The processing procedures finally settled on consist of first plotting all the data on a compressed time scale, visually picking events from the plots, transferring event data to separate sets of tapes and performing detailed analyses using the latter. Many problems remain especially for automatically processing extraterrestrial seismic signals.

Effect of tree thinning and litter removal on the radiocesium (Cs-134, 137) discharge rates in the Kawauchi forest plantation (Fukushima Prefecture, northern Japan)

NASA Astrophysics Data System (ADS)

López-Vicente, Manuel; Onda, Yuichi; Takahashi, Junko; Kato, Hiroaki; Hisadome, Keigo

2016-04-01

On 11 March 2011 a 9.0 earthquake and the resulting tsunami occurred in central-eastern Japan triggering, one day after, the Fukushima Dai-ichi nuclear power plant (DNPP) accident. Despite the bulk of radionuclides (ca. 80%) were transported offshore and out over the Pacific Ocean, significant wet and dry deposits of those radionuclides occurred mainly in the Fukushima Prefecture and in a minor way in the Miyagi, Tochigi, Gunma and Ibaraki Prefectures. As a consequence and among other radionuclides, a total of 511,000 TBq of I-131, 13,500 TBq of Cs-134 and 13,600 TBq of Cs-137 were released into the atmosphere and the ocean, contaminating cultivated soils, rivers, settlements and forested areas. This accident caused severe environmental and economic damages. Several decontamination practices have done, including tree thinning and litter removal within the forests and tree plantations. In this study we analysed the effect of eight different management practices on the radiocesium (Cs-134 and Cs-137) discharge rates during 20 months (May'2013 - Dec'2014) in a Japanese cedar (Cryptomeria japonica) plantation (stand age of 57 years), located in a hillslope near the Kawauchi village, Fukushima Prefecture, northern Japan. This study area (37⁰ 20' 04" N, 140⁰ 53' 13.5" E) is located 16 km southwestern from the DNPP and within the evacuation area. The soils are Andosols. Ten runoff plots (5 x 2 meters) were installed and measurements started on May 2013. Two plots remained without any treatment as control plots and the other eight plots represented the following management practices: Mng1) Litter removal + clear-cutting (no sheet); Mng2) Litter removal + clear-cutting (no sheet); Mng3) Litter removal + clear-cutting (no sheet); Mng4) Litter removal; Mng5) Thinning (logged area); Mng6) Thinning (under remnant trees); Mng7) Litter removal + thinning (logged area); Mng8) Litter removal + thinning (under remnant trees). Each plot had a gauging station and sediment samples were collected every three weeks. Litter removal and tree thinning were done twice. The minimum of ground and vegetation coverages occurred in May and June 2013 and between February and April 2014. The maximum coverages appeared in September-October 2013 and between July and September 2014. The radioactivities of Cs-134 and Cs-137 were determined in the soil and litter fractions by gamma-ray spectrometry. Emissions were measured using a high purity n-type Ge coaxial detector coupled to an amplified and multichannel analyser at the CRiED laboratory of the University of Tsukuba. The activity concentration (Bq / kg) of Cs-134 and Cs-137 were calculated as well as the inventory (Bq / m2) and daily inventory (Bq / m2 day) of Cs-137. A total of 70 correlations were analysed: between the dry weight of the leaf and soil and the corresponding activity of Cs-134 and Cs-137 as well as between the total movement and total daily movement of leaf and soil and the inventory and daily inventory of Cs-137. The amount of soil and caesium movement in the experimental slopes was considerably decreased in the year 2014 than in 2013 due to the vegetation recovery after the operations in each plot.

Branch xylem density variations across the Amazon Basin

NASA Astrophysics Data System (ADS)

Patiño, S.; Lloyd, J.; Paiva, R.; Baker, T. R.; Quesada, C. A.; Mercado, L. M.; Schmerler, J.; Schwarz, M.; Santos, A. J. B.; Aguilar, A.; Czimczik, C. I.; Gallo, J.; Horna, V.; Hoyos, E. J.; Jimenez, E. M.; Palomino, W.; Peacock, J.; Peña-Cruz, A.; Sarmiento, C.; Sota, A.; Turriago, J. D.; Villanueva, B.; Vitzthum, P.; Alvarez, E.; Arroyo, L.; Baraloto, C.; Bonal, D.; Chave, J.; Costa, A. C. L.; Herrera, R.; Higuchi, N.; Killeen, T.; Leal, E.; Luizão, F.; Meir, P.; Monteagudo, A.; Neil, D.; Núñez-Vargas, P.; Peñuela, M. C.; Pitman, N.; Priante Filho, N.; Prieto, A.; Panfil, S. N.; Rudas, A.; Salomão, R.; Silva, N.; Silveira, M.; Soares Dealmeida, S.; Torres-Lezama, A.; Vásquez-Martínez, R.; Vieira, I.; Malhi, Y.; Phillips, O. L.

2009-04-01

Xylem density is a physical property of wood that varies between individuals, species and environments. It reflects the physiological strategies of trees that lead to growth, survival and reproduction. Measurements of branch xylem density, ρx, were made for 1653 trees representing 598 species, sampled from 87 sites across the Amazon basin. Measured values ranged from 218 kg m-3 for a Cordia sagotii (Boraginaceae) from Mountagne de Tortue, French Guiana to 1130 kg m-3 for an Aiouea sp. (Lauraceae) from Caxiuana, Central Pará, Brazil. Analysis of variance showed significant differences in average ρx across regions and sampled plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that species identity (family, genera and species) accounted for 33% with environment (geographic location and plot) accounting for an additional 26%; the remaining "residual" variance accounted for 41% of the total variance. Variations in plot means, were, however, not only accountable by differences in species composition because xylem density of the most widely distributed species in our dataset varied systematically from plot to plot. Thus, as well as having a genetic component, branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing in a predictable manner. Within the analysed taxa, exceptions to this general rule seem to be pioneer species belonging for example to the Urticaceae whose branch xylem density is more constrained than most species sampled in this study. These patterns of variation of branch xylem density across Amazonia suggest a large functional diversity amongst Amazonian trees which is not well understood.

Evaluation of glioblastomas and lymphomas with whole-brain CT perfusion: Comparison between a delay-invariant singular-value decomposition algorithm and a Patlak plot.

PubMed

Hiwatashi, Akio; Togao, Osamu; Yamashita, Koji; Kikuchi, Kazufumi; Yoshimoto, Koji; Mizoguchi, Masahiro; Suzuki, Satoshi O; Yoshiura, Takashi; Honda, Hiroshi

2016-07-01

Correction of contrast leakage is recommended when enhancing lesions during perfusion analysis. The purpose of this study was to assess the diagnostic performance of computed tomography perfusion (CTP) with a delay-invariant singular-value decomposition algorithm (SVD+) and a Patlak plot in differentiating glioblastomas from lymphomas. This prospective study included 17 adult patients (12 men and 5 women) with pathologically proven glioblastomas (n=10) and lymphomas (n=7). CTP data were analyzed using SVD+ and a Patlak plot. The relative tumor blood volume and flow compared to contralateral normal-appearing gray matter (rCBV and rCBF derived from SVD+, and rBV and rFlow derived from the Patlak plot) were used to differentiate between glioblastomas and lymphomas. The Mann-Whitney U test and receiver operating characteristic (ROC) analyses were used for statistical analysis. Glioblastomas showed significantly higher rFlow (3.05±0.49, mean±standard deviation) than lymphomas (1.56±0.53; P<0.05). There were no statistically significant differences between glioblastomas and lymphomas in rBV (2.52±1.57 vs. 1.03±0.51; P>0.05), rCBF (1.38±0.41 vs. 1.29±0.47; P>0.05), or rCBV (1.78±0.47 vs. 1.87±0.66; P>0.05). ROC analysis showed the best diagnostic performance with rFlow (Az=0.871), followed by rBV (Az=0.771), rCBF (Az=0.614), and rCBV (Az=0.529). CTP analysis with a Patlak plot was helpful in differentiating between glioblastomas and lymphomas, but CTP analysis with SVD+ was not. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Comparison Tools for Assessing the Microgravity Environment of Missions, Carriers and Conditions

NASA Technical Reports Server (NTRS)

DeLombard, Richard; McPherson, Kevin; Moskowitz, Milton; Hrovat, Ken

1997-01-01

The Principal Component Spectral Analysis and the Quasi-steady Three-dimensional Histogram techniques provide the means to describe the microgravity acceleration environment of an entire mission on a single plot. This allows a straight forward comparison of the microgravity environment between missions, carriers, and conditions. As shown in this report, the PCSA and QTH techniques bring both the range and median of the microgravity environment onto a single page for an entire mission or another time period or condition of interest. These single pages may then be used to compare similar analyses of other missions, time periods or conditions. The PCSA plot is based on the frequency distribution of the vibrational energy and is normally used for an acceleration data set containing frequencies above the lowest natural frequencies of the vehicle. The QTH plot is based on the direction and magnitude of the acceleration and is normally used for acceleration data sets with frequency content less than 0.1 Hz. Various operating conditions are made evident by using PCSA and QTH plots. Equipment operating either full or part time with sufficient magnitude to be considered a disturbance is very evident as well as equipment contributing to the background acceleration environment. A source's magnitude and/or frequency variability is also evident by the source's appearance on a PCSA plot. The PCSA and QTH techniques are valuable tools for extracting useful information from acceleration data taken over large spans of time. This report shows that these techniques provide a tool for comparison between different sets of microgravity acceleration data, for example different missions, different activities within a mission, and/or different attitudes within a mission. These techniques, as well as others, may be employed in order to derive useful information from acceleration data.

Sampling western spruce budworm by counting larvae on lower crown branches.

Treesearch

R.R. Mason; B.E. Wickman; H.G. Paul

1989-01-01

A technique is described for sampling spruce budworm larvae after bud flush by nondestructively beating branches in the lower crown. Sample data were collected from 32 plots representing a wide range of budworm densities. Statistical analyses indicated that larvae were less aggregated in the lower crown than at the same density in the middle crown. In an independent...

Reference charts for young stands — a quantitative methodology for assessing tree performance

Treesearch

Lance A. Vickers; David R. Larsen; Benjamin O. Knapp; John M. Kabrick; Daniel C. Dey

2017-01-01

Reference charts have long been used in the medical field for quantitative clinical assessment of juvenile development by plotting distribution quantiles for a selected attribute (e.g., height) against age for specified peer populations.We propose that early stand dynamics is an area of study that could benefit from the descriptions and analyses offered by similar...

Analyzing lichen indicator data in the Forest Inventory and Analysis Program

Treesearch

Susan Will-Wolf

2010-01-01

Lichens are one of several forest health indicators sampled every year for a subset of plots on the permanent grid established by the Forest Inventory and Analysis (FIA) Program of the U.S. Department of Agriculture Forest Service. This report reviews analysis procedures for standard FIA lichen indicator data. Analyses of lichen data contribute to state, regional, and...

Estimating erosion risk on forest lands using improved methods of discriminant analysis

Treesearch

J. Lewis; R. M. Rice

1990-01-01

A population of 638 timber harvest areas in northwestern California was sampled for data related to the occurrence of critical amounts of erosion (>153 m3 within 0.81 ha). Separate analyses were done for forest roads and logged areas. Linear discriminant functions were computed in each analysis to contrast site conditions at critical plots with randomly selected...

Estimating FIA plot characteristics using NAIP imagery, function modeling, and the RMRS Raster Utility coding library

Treesearch

John S. Hogland; Nathaniel M. Anderson

2015-01-01

Raster modeling is an integral component of spatial analysis. However, conventional raster modeling techniques can require a substantial amount of processing time and storage space, often limiting the types of analyses that can be performed. To address this issue, we have developed Function Modeling. Function Modeling is a new modeling framework that...

Estimating FIA plot characteristics using NAIP imagery, function modeling, and the RMRS raster utility coding library

Treesearch

John S. Hogland; Nathaniel M. Anderson

2015-01-01

Raster modeling is an integral component of spatial analysis. However, conventional raster modeling techniques can require a substantial amount of processing time and storage space, often limiting the types of analyses that can be performed. To address this issue, we have developed Function Modeling. Function Modeling is a new modeling framework that streamlines the...

Rate of value change in New England timber stands

Treesearch

Stanford L. Arner; David A. Gansner; Thomas W. Birch; Thomas W. Birch

1990-01-01

Analyses of remeasured plot data show that between the last two forest inventories of New England, compound rates of value change in timber stands averaged 4.2 percent and ranged from -26 to + 43 percent. Three key characteristics of stand condition (species composition, tree size, and stocking) can be used to estimate economic growth. For example, stands with (1) more...

Status of the Longleaf Pine Forests of the West Gulf Coastal Plain

Treesearch

Kenneth W. Outcalt

1997-01-01

Datafrom the USDA Forest Service, forest inventory and analyses permanent field plot were used to track changes in longleaf pine (Pinuspalustris Mill.) communities in Texas and Louisiana between 1985 and 1995. The decline of longleaf forest has continued in Louisiana. Texas had much less longleaf type in 1985, but unlike Louisiana there has been a small increase in the...

Lattice QCD evidence that the Λ(1405) resonance is an antikaon-nucleon molecule.

PubMed

Hall, Jonathan M M; Kamleh, Waseem; Leinweber, Derek B; Menadue, Benjamin J; Owen, Benjamin J; Thomas, Anthony W; Young, Ross D

2015-04-03

For almost 50 years the structure of the Λ(1405) resonance has been a mystery. Even though it contains a heavy strange quark and has odd parity, its mass is lower than any other excited spin-1/2 baryon. Dalitz and co-workers speculated that it might be a molecular state of an antikaon bound to a nucleon. However, a standard quark-model structure is also admissible. Although the intervening years have seen considerable effort, there has been no convincing resolution. Here we present a new lattice QCD simulation showing that the strange magnetic form factor of the Λ(1405) vanishes, signaling the formation of an antikaon-nucleon molecule. Together with a Hamiltonian effective-field-theory model analysis of the lattice QCD energy levels, this strongly suggests that the structure is dominated by a bound antikaon-nucleon component. This result clarifies that not all states occurring in nature can be described within a simple quark model framework and points to the existence of exotic molecular meson-nucleon bound states.

ω and η (η') Mesons from NN and nd Collisions at Intermediate Energies

NASA Astrophysics Data System (ADS)

Kaptari, L. P.; Kämpfer, B.

The production of pseudo scalar, η, η‧, and vector, ω, ρ, ϕ, mesons in NN collisions at threshold-near energies is analyzed within a covariant effective meson-nucleon theory. It is shown that a good description of cross sections and angular distributions, for vector meson production, can be accomplished by considering meson and nucleon currents only, while for pseudo scalar production an inclusion of nucleon resonances is needed. The di-electron production from subsequent Dalitz decay of the produced mesons, η‧ → γγ* → γe+e- and ω → πγ* → πe+e- is also considered and numerical results are presented for intermediate energies and kinematics of possible experiments with HADES, CLAS and KEK-PS. We argue that the transition form factor ω → γ*π as well as η‧ → γ*γ can be defined in a fairly model independent way and the feasibility of an experimental access to transition form factors is discussed.

Weighing Evidence "Steampunk" Style via the Meta-Analyser.

PubMed

Bowden, Jack; Jackson, Chris

2016-10-01

The funnel plot is a graphical visualization of summary data estimates from a meta-analysis, and is a useful tool for detecting departures from the standard modeling assumptions. Although perhaps not widely appreciated, a simple extension of the funnel plot can help to facilitate an intuitive interpretation of the mathematics underlying a meta-analysis at a more fundamental level, by equating it to determining the center of mass of a physical system. We used this analogy to explain the concepts of weighing evidence and of biased evidence to a young audience at the Cambridge Science Festival, without recourse to precise definitions or statistical formulas and with a little help from Sherlock Holmes! Following on from the science fair, we have developed an interactive web-application (named the Meta-Analyser) to bring these ideas to a wider audience. We envisage that our application will be a useful tool for researchers when interpreting their data. First, to facilitate a simple understanding of fixed and random effects modeling approaches; second, to assess the importance of outliers; and third, to show the impact of adjusting for small study bias. This final aim is realized by introducing a novel graphical interpretation of the well-known method of Egger regression.

Automatised data quality monitoring of the LHCb Vertex Locator

NASA Astrophysics Data System (ADS)

Bel, L.; Crocombe, A. Ch.; Gersabeck, M.; Pearce, A.; Majewski, M.; Szumlak, T.

2017-10-01

The LHCb Vertex Locator (VELO) is a silicon strip semiconductor detector operating at just 8mm distance to the LHC beams. Its 172,000 strips are read at a frequency of 1.1 MHz and processed by off-detector FPGAs followed by a PC cluster that reduces the event rate to about 10 kHz. During the second run of the LHC, which lasts from 2015 until 2018, the detector performance will undergo continued change due to radiation damage effects. This necessitates a detailed monitoring of the data quality to avoid adverse effects on the physics analysis performance. The VELO monitoring infrastructure has been re-designed compared to the first run of the LHC when it was based on manual checks. The new system is based around an automatic analysis framework, which monitors the performance of new data as well as long-term trends and using dedicated algorithms flags issues whenever they arise. The new analysis framework then analyses the plots that are produced by these algorithms. One of its tasks is to perform custom comparisons between the newly processed data and that from reference runs. The most-likely scenario in which this analysis would identify an issue is the parameters of the readout electronics no longer being optimal and requiring retuning. The data of the monitoring plots can be reduced further, e.g. by evaluating averages, and these quantities are input to long-term trending. This is used to detect slow variation of quantities, which are not detectable by the comparison of two nearby runs. Such gradual change is what is expected due to radiation damage effects. It is essential to detect these changes early such that measures can be taken, e.g. adjustments of the operating voltage, to prevent any impact on the quality of high-level quantities and thus on physics analyses. The plots as well as the analysis results and trends are made available through graphical user interfaces (GUIs). These GUIs are dynamically configured by a single configuration that determines the choice and arrangement of plots and trends and ensures a common look and feel.

A MATLAB®-based program for 3D visualization of stratigraphic setting and subsidence evolution of sedimentary basins: example application to the Vienna Basin

NASA Astrophysics Data System (ADS)

Lee, Eun Young; Novotny, Johannes; Wagreich, Michael

2015-04-01

In recent years, 3D visualization of sedimentary basins has become increasingly popular. Stratigraphic and structural mapping is highly important to understand the internal setting of sedimentary basins. And subsequent subsidence analysis provides significant insights for basin evolution. This study focused on developing a simple and user-friendly program which allows geologists to analyze and model sedimentary basin data. The developed program is aimed at stratigraphic and subsidence modelling of sedimentary basins from wells or stratigraphic profile data. This program is mainly based on two numerical methods; surface interpolation and subsidence analysis. For surface visualization four different interpolation techniques (Linear, Natural, Cubic Spline, and Thin-Plate Spline) are provided in this program. The subsidence analysis consists of decompaction and backstripping techniques. The numerical methods are computed in MATLAB® which is a multi-paradigm numerical computing environment used extensively in academic, research, and industrial fields. This program consists of five main processing steps; 1) setup (study area and stratigraphic units), 2) loading of well data, 3) stratigraphic modelling (depth distribution and isopach plots), 4) subsidence parameter input, and 5) subsidence modelling (subsided depth and subsidence rate plots). The graphical user interface intuitively guides users through all process stages and provides tools to analyse and export the results. Interpolation and subsidence results are cached to minimize redundant computations and improve the interactivity of the program. All 2D and 3D visualizations are created by using MATLAB plotting functions, which enables users to fine-tune the visualization results using the full range of available plot options in MATLAB. All functions of this program are illustrated with a case study of Miocene sediments in the Vienna Basin. The basin is an ideal place to test this program, because sufficient data is available to analyse and model stratigraphic setting and subsidence evolution of the basin. The study area covers approximately 1200 km2 including 110 data points in the central part of the Vienna Basin.

The Effects of Different Tillage Systems on Soil Hydrology and Erosion in Southeastern Brazil

NASA Astrophysics Data System (ADS)

Bertolino, A. V. F. A.; Fernandes, N. F.; Souza, A. P.; Miranda, J. P.; Rocha, M. L.

2009-04-01

Conventional tillage usually imposes a variety of modifications on soil properties that can lead to important changes in the type and magnitude of the hydrological processes that take place at the upper portion of the soil profile. Plough pan formation, for example, is considered to be an important consequence of conventional tillage practices in southeastern Brazil, decreasing infiltration rates and contributing to soil erosion, especially in steep slopes. In order to characterize the changes in soil properties and soil hydrology due to the plough pan formation we carried out detailed investigations in two experimental plots in Paty do Alferes region, located in the hilly landscape of Serra do Mar in southeastern Brazil, close to Rio de Janeiro city. Farming activities are very important in this area, in particular the ones related to the tomato production. The local hilly topography with short and steep hillslopes, as well as an average annual rainfall of almost 2000 mm, favor surface runoff and the evolution of rill and gully erosion. The two runoff plots are 22m long by 4m wide and were installed side by side along a representative hillslope, both in terms of soil (Oxisol) and steepness. At the lower portion of each plot there is a collecting trough connected by a PVC pipe to a 500 and 1000 liters sediment storage boxes. Soil tillage treatments used in the two plots were: Conventional Tillage (CT), with one plowing using disc-type plow (about 18 cm depth) and one downhill tractor leveling, in addition to burning residues from previous planting; and Minimum Tillage (MT), which did not allow burning residues from previous planting and preserved a vegetative cover between plantation lines. Runoff and soil erosion measurements were carried out in both plots immediately after each rainfall event. In order to characterize soil water movements under the two tillage systems (CT and MT), 06 nests of tensiometers and 04 nests of Watermark sensors were installed in each plot. Based on previous studies in this area, suggesting that the plough pan develop at about 20cm depth, the soil water potential (SWP) sensors were installed, in each nest, at 15, 30 and 80 cm depths. Continuously readings in the 30 SWP sensors were made both at a daily and event basis (during some rainfall events) for 25 months. Rainfall was continuously measured in the area by an automatic rain-gauge (tipping bucket) installed close to the plots. In order to characterize changes is soil porosity, both total pore space and pore inter-connections, undisturbed soil blocks were collected for micromorphological analyses (0-10cm, 12-22cm and 25-35cm depths) at small trenches located at the upper parts of each plot. The results attested that soil under CT developed a plough pan layer at about 20 cm depth, showing a 44% decrease in total pore space from 0-10cm to 12-22cm depths, with a predominant network of isolated pores. In the MT plot, soil porosity is more homogeneous with depth, with a predominant network of larger and better connected pores. The results related to soil hydrology show that in many moments, both CT and MT, stay very close to saturation, both at 15 and 30 cm depth. Above the plough pan under CT, soils tend to saturate faster and to have a slower drainage rate than the ones under MT. Detailed SWP analyses made during rain events suggest that CT may favors lateral flows while soils under MT are draining. Soil erosion rates measured for individual events at CT are about four times greater than the ones observed at MT. The results observed in this study attest that conventional tillage (CT) in this area imposed important changes in soil structure, pore-size distribution and connectivity, as well as in soil infiltration, drainage and erosion.

Form and function in hillslope hydrology: in situ imaging and characterization of flow-relevant structures

NASA Astrophysics Data System (ADS)

Jackisch, Conrad; Angermann, Lisa; Allroggen, Niklas; Sprenger, Matthias; Blume, Theresa; Tronicke, Jens; Zehe, Erwin

2017-07-01

The study deals with the identification and characterization of rapid subsurface flow structures through pedo- and geo-physical measurements and irrigation experiments at the point, plot and hillslope scale. Our investigation of flow-relevant structures and hydrological responses refers to the general interplay of form and function, respectively. To obtain a holistic picture of the subsurface, a large set of different laboratory, exploratory and experimental methods was used at the different scales. For exploration these methods included drilled soil core profiles, in situ measurements of infiltration capacity and saturated hydraulic conductivity, and laboratory analyses of soil water retention and saturated hydraulic conductivity. The irrigation experiments at the plot scale were monitored through a combination of dye tracer, salt tracer, soil moisture dynamics, and 3-D time-lapse ground penetrating radar (GPR) methods. At the hillslope scale the subsurface was explored by a 3-D GPR survey. A natural storm event and an irrigation experiment were monitored by a dense network of soil moisture observations and a cascade of 2-D time-lapse GPR trenches. We show that the shift between activated and non-activated state of the flow paths is needed to distinguish structures from overall heterogeneity. Pedo-physical analyses of point-scale samples are the basis for sub-scale structure inference. At the plot and hillslope scale 3-D and 2-D time-lapse GPR applications are successfully employed as non-invasive means to image subsurface response patterns and to identify flow-relevant paths. Tracer recovery and soil water responses from irrigation experiments deliver a consistent estimate of response velocities. The combined observation of form and function under active conditions provides the means to localize and characterize the structures (this study) and the hydrological processes (companion study Angermann et al., 2017, this issue).

Developing tools for the safety specification in risk management plans: lessons learned from a pilot project.

PubMed

Cooper, Andrew J P; Lettis, Sally; Chapman, Charlotte L; Evans, Stephen J W; Waller, Patrick C; Shakir, Saad; Payvandi, Nassrin; Murray, Alison B

2008-05-01

Following the adoption of the ICH E2E guideline, risk management plans (RMP) defining the cumulative safety experience and identifying limitations in safety information are now required for marketing authorisation applications (MAA). A collaborative research project was conducted to gain experience with tools for presenting and evaluating data in the safety specification. This paper presents those tools found to be useful and the lessons learned from their use. Archive data from a successful MAA were utilised. Methods were assessed for demonstrating the extent of clinical safety experience, evaluating the sensitivity of the clinical trial data to detect treatment differences and identifying safety signals from adverse event and laboratory data to define the extent of safety knowledge with the drug. The extent of clinical safety experience was demonstrated by plots of patient exposure over time. Adverse event data were presented using dot plots, which display the percentages of patients with the events of interest, the odds ratio, and 95% confidence interval. Power and confidence interval plots were utilised for evaluating the sensitivity of the clinical database to detect treatment differences. Box and whisker plots were used to display laboratory data. This project enabled us to identify new evidence-based methods for presenting and evaluating clinical safety data. These methods represent an advance in the way safety data from clinical trials can be analysed and presented. This project emphasises the importance of early and comprehensive planning of the safety package, including evaluation of the use of epidemiology data.

Changes in species abundance after seven years of elevated atmospheric CO2 and warming in a Subarctic birch forest understorey, as modified by rodent and moth outbreaks

PubMed Central

Carlsson, Bengt Å.; Melillo, Jerry M.

2018-01-01

A seven-year long, two-factorial experiment using elevated temperatures (5 °C) and CO2 (concentration doubled compared to ambient conditions) designed to test the effects of global climate change on plant community composition was set up in a Subarctic ecosystem in northernmost Sweden. Using point-frequency analyses in permanent plots, an increased abundance of the deciduous Vaccinium myrtillus, the evergreens V. vitis-idaea and Empetrum nigrum ssp. hermaphroditum and the grass Avenella flexuosa was found in plots with elevated temperatures. We also observed a possibly transient community shift in the warmed plots, from the vegetation being dominated by the deciduous V. myrtillus to the evergreen V. vitis-idaea. This happened as a combined effect of V. myrtillus being heavily grazed during two events of herbivore attack—one vole outbreak (Clethrionomys rufocanus) followed by a more severe moth (Epirrita autumnata) outbreak that lasted for two growing seasons—producing a window of opportunity for V. vitis-idaea to utilize the extra light available as the abundance of V. myrtillus decreased, while at the same time benefitting from the increased growth in the warmed plots. Even though the effect of the herbivore attacks did not differ between treatments they may have obscured any additional treatment effects. This long-term study highlights that also the effects of stochastic herbivory events need to be accounted for when predicting future plant community changes.

QUESPOWR MRI: QUantification of Exchange as a function of Saturation Power On the Water Resonance

PubMed Central

Randtke, Edward A.; Pagel, Mark D.; Cárdenas-Rodríguez, Julio

2018-01-01

QUantification of Exchange as a function of Saturation Power On the Water Resonance (QUESPOWR) MRI is a new method that can estimate chemical exchange rates. This method acquires a series of OPARACHEE MRI acquisitions with a range of RF powers for the WALTZ16* pulse train, which are applied on the water resonance. A QUESPOWR plot can be generated from the power dependence of the % water signal, which is similar to a QUESP plot that is generated from CEST MRI acquisition methods with RF saturation applied off-resonance from water. A QUESPOWR plot can be quantitatively analyzed using linear fitting methods to provide estimates of average chemical exchange rates. Analyses of the shapes of QUESPOWR plots can also be used to estimate relative differences in average chemical exchange rates and concentrations of biomolecules. The performance of QUESPOWR MRI was assessed via simulations, an in vitro study with iopamidol, and an in vivo study with a mouse model of mammary carcinoma. The results showed that QUESPOWR MRI is especially sensitive to chemical exchange between water and biomolecules that have intermediate to fast chemical exchange rates and chemical shifts that are close to water, which are notoriously difficult to assess with other CEST MRI methods. In addition, in vivo QUESPOWR MRI detected acidic tumor tissues relative to normal tissues that are pH-neutral, and therefore may be a new paradigm for tumor detection with MRI. PMID:27404128

Thrips (Thysanoptera: Thripidae) mitigation in seedling cotton using strip tillage and winter cover crops.

PubMed

Toews, Michael D; Tubbs, R Scott; Wann, Dylan Q; Sullivan, Dana

2010-10-01

Thrips are the most consistent insect pests of seedling cotton in the southeastern United States, where symptoms can range from leaf curling to stand loss. In a 2 year study, thrips adults and immatures were sampled at 14, 21 and 28 days after planting on cotton planted with a thiamethoxam seed treatment in concert with crimson clover, wheat or rye winter cover crops and conventional or strip tillage to investigate potential differences in thrips infestations. Densities of adult thrips, primarily Frankliniella fusca (Hinds), peaked on the first sampling date, whereas immature densities peaked on the second sampling date. Regardless of winter cover crop, plots that received strip tillage experienced significantly fewer thrips at each sampling interval. In addition, assessment of percentage ground cover 42 days after planting showed that there was more than twice as much ground cover in the strip-tilled plots compared with conventionally tilled plots. Correlation analyses showed that increased ground cover was inversely related to thrips densities that occurred on all three sampling dates in 2008 and the final sampling date in 2009. Growers who utilize strip tillage and a winter cover crop can utilize seed treatments for mitigation of early-season thrips infestation.

Determining the spatial variability of crop yields of two different climatic regions in Southwest Germany

NASA Astrophysics Data System (ADS)

Eshonkulov, Ravshan; Poyda, Arne; Ingwersen, Joachim; Streck, Thilo

2017-04-01

Assessing the spatial variability of soil physical properties is crucial for agricultural land management. We determined the spatial variability within two agricultural fields in the regions of Kraichgau and Swabian Jura in Southwest Germany. We determined soil physical properties and recorded the temporal development of soil mineral nitrogen (N) and water content as well as that of plant variables (phenology, biomass, leaf area index (LAI), N content, green vegetation fraction (GVF). The work was conducted during the vegetation periods of 2015 and 2016 in winter wheat, and winter rapeseed in Kraichgau and winter barley and silage maize on Swabian Jura. Measurements were taken in three-weekly intervals. On each field, we identified three plots with reduced plant development using high-resolution (RapidEye) satellite images ("cold spots"). Measurements taken on these cold spots were compared to those from five established (long-term) reference plots representing the average field variability. The software EXPERT-N was used to simulate the soil crop system at both cold spots and reference plots. Sensitivity analyses were conducted to identify the most important parameters for the determination of spatial variability in crop growth dynamics.

A revised version of Graphic Normative Analysis Program (GNAP) with examples of petrologic problem solving

USGS Publications Warehouse

Stuckless, J.S.; VanTrump, G.

1979-01-01

A revised version of Graphic Normative Analysis Program (GNAP) has been developed to allow maximum flexibility in the evaluation of chemical data by the occasional computer user. GNAP calculates ClPW norms, Thornton and Tuttle's differentiation index, Barth's cations, Niggli values and values for variables defined by the user. Calculated values can be displayed graphically in X-Y plots or ternary diagrams. Plotting can be done on a line printer or Calcomp plotter with either weight percent or mole percent data. Modifications in the original program give the user some control over normative calculations for each sample. The number of user-defined variables that can be created from the data has been increased from ten to fifteen. Plotting and calculations can be based on the original data, data adjusted to sum to 100 percent, or data adjusted to sum to 100 percent without water. Analyses for which norms were previously not computable are now computed with footnotes that show excesses or deficiencies in oxides (or volatiles) not accounted for by the norm. This report contains a listing of the computer program, an explanation of the use of the program, and the two sample problems.

Recurrent patterns of atrial depolarization during atrial fibrillation assessed by recurrence plot quantification.

PubMed

Censi, F; Barbaro, V; Bartolini, P; Calcagnini, G; Michelucci, A; Gensini, G F; Cerutti, S

2000-01-01

The aim of this study was to determine the presence of organization of atrial activation processes during atrial fibrillation (AF) by assessing whether the activation sequences are wholly random or are governed by deterministic mechanisms. We performed both linear and nonlinear analyses based on the cross correlation function (CCF) and recurrence plot quantification (RPQ), respectively. Recurrence plots were quantified by three variables: percent recurrence (PR), percent determinism (PD), and entropy of recurrences (ER). We recorded bipolar intra-atrial electrograms in two atrial sites during chronic AF in 19 informed subjects, following two protocols. In one, both recording sites were in the right atrium; in the other protocol, one site was in the right atrium, the other one in the left atrium. We extracted 19 episodes of type I AF (Wells' classification). RPQ detected transient recurrent patterns in all the episodes, while CCF was significant only in ten episodes. Surrogate data analysis, based on a cross-phase randomization procedure, decreased PR, PD, and ER values. The detection of spatiotemporal recurrent patterns together with the surrogate data results indicate that during AF a certain degree of local organization exists, likely caused by deterministic mechanisms of activation.

Dissociations of spatial congruence effects across response measures: an examination of delta plots.

PubMed

Miller, Jeff; Roüast, Nora M

2016-09-01

Spatial congruence ("Simon") effects on reaction time (RT) and response force (RF) were studied in two experiments requiring speeded choice responses to the color of a stimulus located irrelevantly to the left or right of fixation. In Experiment 1 with unimanual responses, both RT and incorrect-hand RF were sensitive to spatial congruence, and both showed larger Simon effects following a congruent trial than following an incongruent one. RT and incorrect-hand RF were dissociated in distributional (i.e., delta plot) analyses, however. As in previous studies, the Simon effect on RT was largest for the fastest responses and diminished as RT increased (i.e., decreasing delta plot). In contrast, Simon effects on RF did not decrease for slower responses; if anything, they increased slightly. In Experiment 2 participants made bimanual responses, allowing measurement of the spatial congruence effect for each trial. Responses were both faster and more forceful with the spatially congruent hand than with the spatially incongruent one, but neither of these effects decreased for slower responses. Overall, the results demonstrate that at least some motor-level effects of irrelevant spatial location persist for slower responses.

Ecotoxicological Study of Insecticide Effects on Arthropods in Common Bean

PubMed Central

de Barros, Emerson Cristi; Ventura, Hudson Vaner; Gontijo, Pablo Costa; Pereira, Renata Ramos; Picanço, Marcelo Coutinho

2015-01-01

Arthropods are an important group of macroorganisms that work to maintain ecosystem health. Despite the agricultural benefits of chemical control against arthropod pests, insecticides can cause environmental damage. We examined the effects of one and two applications of the insecticides chlorfenapyr (0.18 liters a.i. ha-1) and methamidophos (0.45 liters a.i. ha-1), both independently and in combination, on arthropods in plots of common bean. The experiment was repeated for two growing seasons. Principal response curve, richness estimator, and Shannon–Wiener diversity index analyses were performed. The insecticides generally affected the frequency, richness, diversity, and relative abundance of the arthropods. In addition, the arthropods did not experience recovery after the insecticide applications. The results suggest that the insecticide impacts were sufficiently drastic to eliminate many taxa from the studied common bean plots. PMID:25700537

Reservoir zonation based on statistical analyses: A case study of the Nubian sandstone, Gulf of Suez, Egypt

NASA Astrophysics Data System (ADS)

El Sharawy, Mohamed S.; Gaafar, Gamal R.

2016-12-01

Both reservoir engineers and petrophysicists have been concerned about dividing a reservoir into zones for engineering and petrophysics purposes. Through decades, several techniques and approaches were introduced. Out of them, statistical reservoir zonation, stratigraphic modified Lorenz (SML) plot and the principal component and clustering analyses techniques were chosen to apply on the Nubian sandstone reservoir of Palaeozoic - Lower Cretaceous age, Gulf of Suez, Egypt, by using five adjacent wells. The studied reservoir consists mainly of sandstone with some intercalation of shale layers with varying thickness from one well to another. The permeability ranged from less than 1 md to more than 1000 md. The statistical reservoir zonation technique, depending on core permeability, indicated that the cored interval of the studied reservoir can be divided into two zones. Using reservoir properties such as porosity, bulk density, acoustic impedance and interval transit time indicated also two zones with an obvious variation in separation depth and zones continuity. The stratigraphic modified Lorenz (SML) plot indicated the presence of more than 9 flow units in the cored interval as well as a high degree of microscopic heterogeneity. On the other hand, principal component and cluster analyses, depending on well logging data (gamma ray, sonic, density and neutron), indicated that the whole reservoir can be divided at least into four electrofacies having a noticeable variation in reservoir quality, as correlated with the measured permeability. Furthermore, continuity or discontinuity of the reservoir zones can be determined using this analysis.

Comparative genetic responses to climate for the varieties of Pinus ponderosa and Pseudotsuga menziesii: realized climate niches

Treesearch

Gerald E. Rehfeldt; Barry C. Jaquish; Javier Lopez-Upton; Cuauhtemoc Saenz-Romero; J. Bradley St Clair; Laura P. Leites; Dennis G. Joyce

2014-01-01

The Random Forests classification algorithm was used to predict the occurrence of the realized climate niche for two sub-specific varieties of Pinus ponderosa and three varieties of Pseudotsuga menziesii from presence-absence data in forest inventory ground plots. Analyses were based on ca. 271,000 observations for P. ponderosa and ca. 426,000 observations for P....

Imputed forest structure uncertainty varies across elevational and longitudinal gradients in the western Cascade mountains, Oregon, USA

Treesearch

David M. Bell; Matthew J. Gregory; Janet L. Ohmann

2015-01-01

Imputation provides a useful method for mapping forest attributes across broad geographic areas based on field plot measurements and Landsat multi-spectral data, but the resulting map products may be of limited use without corresponding analyses of uncertainties in predictions. In the case of k-nearest neighbor (kNN) imputation with k = 1, such as the Gradient Nearest...

3D engineered fiberboard : finite element analysis of a new building product

Treesearch

John F. Hunt

2004-01-01

This paper presents finite element analyses that are being used to analyze and estimate the structural performance of a new product called 3D engineered fiberboard in bending and flat-wise compression applications. A 3x3x2 split-plot experimental design was used to vary geometry configurations to determine their effect on performance properties. The models are based on...

The Effect of Psychological Counselling in Group on Life Orientation and Loneliness Levels of the University Students

ERIC Educational Resources Information Center

Gurgan, Ugur

2013-01-01

The present study was an experimental research which was applied for increasing of the life tendencies and decreasing the loneliness of the university students, and in which the effect of psychological counselling in group on loneliness level was analysed. The present study consisting of mix measurements was carried out by 2x2 split-plot in order…

Tree regeneration spatial patterns in ponderosa pine forests following stand-replacing fire: Influence of topography and neighbors

Treesearch

Justin P. Ziegler; Chad M. Hoffman; Paula J. Fornwalt; Carolyn H. Sieg; Michael A. Battaglia; Marin E. Chambers; Jose M. Iniguez

2017-01-01

Shifting fire regimes alter forest structure assembly in ponderosa pine forests and may produce structural heterogeneity following stand-replacing fire due, in part, to fine-scale variability in growing environments. We mapped tree regeneration in eighteen plots 11 to 15 years after stand-replacing fire in Colorado and South Dakota, USA. We used point pattern analyses...

Chaotic dynamics of Heisenberg ferromagnetic spin chain with bilinear and biquadratic interactions

NASA Astrophysics Data System (ADS)

Blessy, B. S. Gnana; Latha, M. M.

2017-10-01

We investigate the chaotic dynamics of one dimensional Heisenberg ferromagnetic spin chain by constructing the Hamiltonian equations of motion. We present the trajectory and phase plots of the system with bilinear and also biquadratic interactions. The stability of the system is analysed in both cases by constructing the Jacobian matrix and by measuring the Lyapunov exponents. The results are illustrated graphically.

Approximation of the breast height diameter distribution of two-cohort stands by mixture models II Goodness-of-fit tests

Treesearch

Rafal Podlaski; Francis .A. Roesch

2013-01-01

The goals of this study are (1) to analyse the accuracy of the approximation of empirical distributions of diameter at breast height (dbh) using two-component mixtures of either the Weibull distribution or the gamma distribution in two−cohort stands, and (2) to discuss the procedure of choosing goodness−of−fit tests. The study plots were...

Planetary astronomy program

NASA Technical Reports Server (NTRS)

Chapman, C. R.; Hartmann, W. K.

1978-01-01

Observations and analyses of asteroids, Trojans and cometary nuclei are presented. Spectrophotometry was used to observe the cometary nuclei. The spectra are plotted as a function of semimajor axis and eccentricity. Trojans and other asteroids at great solar distances show a variety of spectra, many of them quite red despite the low measured albedoes for many of these asteroids. The asteroid spectra are grouped according to diameter and taxonomic class.

Oligotyping reveals stronger relationship of organic soil bacterial community structure with N-amendments and soil chemistry in comparison to that of mineral soil at Harvard Forest, MA, USA.

PubMed

Turlapati, Swathi A; Minocha, Rakesh; Long, Stephanie; Ramsdell, Jordan; Minocha, Subhash C

2015-01-01

The impact of chronic nitrogen amendments on bacterial communities was evaluated at Harvard Forest, Petersham, MA, USA. Thirty soil samples (3 treatments × 2 soil horizons × 5 subplots) were collected in 2009 from untreated (control), low nitrogen-amended (LN; 50 kg NH4NO3 ha(-1) yr(-1)) and high nitrogen-amended (HN; 150 kg NH4NO3 ha(-1) yr(-1)) plots. PCR-amplified partial 16S rRNA gene sequences made from soil DNA were subjected to pyrosequencing (Turlapati et al., 2013) and analyses using oligotyping. The parameters M (the minimum count of the most abundant unique sequence in an oligotype) and s (the minimum number of samples in which an oligotype is expected to be present) had to be optimized for forest soils because of high diversity and the presence of rare organisms. Comparative analyses of the pyrosequencing data by oligotyping and operational taxonomic unit clustering tools indicated that the former yields more refined units of taxonomy with sequence similarity of ≥99.5%. Sequences affiliated with four new phyla and 73 genera were identified in the present study as compared to 27 genera reported earlier from the same data (Turlapati et al., 2013). Significant rearrangements in the bacterial community structure were observed with N-amendments revealing the presence of additional genera in N-amended plots with the absence of some that were present in the control plots. Permutational MANOVA analyses indicated significant variation associated with soil horizon and N treatment for a majority of the phyla. In most cases soil horizon partitioned more variation relative to treatment and treatment effects were more evident for the organic (Org) horizon. Mantel test results for Org soil showed significant positive correlations between bacterial communities and most soil parameters including NH4 and NO3. In mineral soil, correlations were seen only with pH, NH4, and NO3. Regardless of the pipeline used, a major hindrance for such a study remains to be the lack of reference databases for forest soils.

Vector diagram of the chemical compositions of tektites and earth lavas

NASA Technical Reports Server (NTRS)

Kvasha, L. G.; Gorshkov, G. S.

1978-01-01

The chemical compositions of tektites and various volcanic glasses, similar in composition to tektites are compared by a petrochemical method. The advantage of the method is that a large number of chemical analyses of igneous rocks can be graphically compared with the help of vectors, plotted in relation to six parameters. These parameters, calculated from ratios of the main oxides given by silicate analysis, reflect the chief characteristics of igneous rock. Material for the study was suppled by data from chemical analysis characterizing tektites of all known locations and data from chemical analyses of obsidians similar in chemical composition to tektites of various petrographical provinces.

Study of the gas contents of rocks: An approach to the evolution of atmospheres on the earth and planets

NASA Technical Reports Server (NTRS)

Barker, C.

1972-01-01

A high vacuum system was built for extracting volatiles from rocks either by heating or crushing, and preliminary analyses of the volatiles were made for selected terrestrial basalts and granites. The apparatus and experimental procedures are described, and the major problems associated with water measurement and choice of argon to replace neon as the internal standard are discussed. Preliminary analyses of granites and basalts indicate the following: All analyses lie in the H2O-CO2-CO triangle on a C-H-O ternary diagram. The compositions of the volatiles plot in distinct, but overlapping, areas of the C-H-O diagram. Pre-Cambrian granites have a higher volatile content than younger granites. Continental basalts have a higher volatile content than oceanic basalts.

Phytoremediation of Excavation in Eastern Siberia

NASA Astrophysics Data System (ADS)

Timofeeva, S. S.; Zhmurova, T. M.

2017-04-01

The paper deals with prospects and applicability of phytoremediation technology in the conditions of Eastern Siberia as applied to gypsum stone extraction of Zalarinsky deposit in Irkutsk region. It analyses dust intensity for different technological processes of the deposit and evaluates the dust loading on the workers of the deposit. The selection of plantings that have potential to neutralize the dust loading produced by the plot “Severniy” is carried out.

SPRUCE Deep Peat Heat (DPH) Metagenomes for Peat Samples Collected June 2015

DOE Data Explorer

Klumber, Laurel A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Yang, Zamin K. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Schadt, Christopher W. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2015-01-01

This data set provides links to the results of metagenomic analyses of 38 peat core samples collected on 16 June 2015 from SPRUCE experiment treatment plots after approximately one year of belowground heating. These metagenomes are archived in the U.S. Department of Energy Joint Genome Institute (DOE JGI) Integrated Microbial Genomes (IMG) system and are available at the accession numbers provided in the accompanying inventory file.

Effects of fertilization on the growth and development of a Japanese larch plantation in West Virginia

Treesearch

James N. Kochenderfer; H. Clay Smith; Jerry T. Crews

1995-01-01

The effects of fertilization on the growth and development of a Japanese larch plantation in central West Virginia were evaluated after 9 years. Mean height and diameter growth of the larch trees were greater on the unfertilized plots. Foliar and soil chemical analyses were used to examine this apparent anomaly. Japanese larch demonstrated an ability to grow well on a...

Phytostabilisation of copper-contaminated soil in Katanga: an experiment with three native grasses and two amendments.

PubMed

Shutcha, Mylor Ngoy; Mubemba, Michel Mpundu; Faucon, Michel-Pierre; Luhembwe, Michel Ngongo; Visser, Marjolein; Colinet, Gilles; Meerts, Pierre

2010-08-01

This study evaluates the feasibility of using the grass species Rendlia altera, Monocymbium ceresiiforme, Cynodon dactylon, and amendments (compost and lime) for the phytostabilisation of soils contaminated by Cu in the province of Katanga (Democratic Republic of Congo). Species were grown on control and Cu-contaminated plots (artificially contaminated with 2,500 mg kg(-1) Cu) unamended (NA), amended with 4.5 kg compost m(-2) or 0.2 kg lime m(-2). R. altera was also grown on contaminated plots amended with 22.5 kg compost m(-2) or 1 kg lime m(-2). Plant survival, growth, and reproduction were monitored for two years. Cu-concentration in leaves of R. altera and M. ceresiiforme were analysed. pH and extractable Cu (0.01 M CaCl2) in soil were analysed in April 2007 and 2008. Results showed that R. altera seems to be the best candidate because of its highest survival on NA, followed by M. ceresiiforme, while liming was necessary to ensure survival of C. dactylon. Lime increased plant reproduction and reduced Cu accumulation in leaves compared to compost. However, higher survival and number of spikes of R. altera obtained in experiment 2 with 22.5 kg compost m(-2) suggest that lime x compost interactions should be investigated in further studies.

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.

PubMed

Montenegro-Burke, J Rafael; Phommavongsay, Thiery; Aisporna, Aries E; Huan, Tao; Rinehart, Duane; Forsberg, Erica; Poole, Farris L; Thorgersen, Michael P; Adams, Michael W W; Krantz, Gregory; Fields, Matthew W; Northen, Trent R; Robbins, Paul D; Niedernhofer, Laura J; Lairson, Luke; Benton, H Paul; Siuzdak, Gary

2016-10-04

Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism.

Evaluation of treatment-effect heterogeneity using biomarkers measured on a continuous scale: subpopulation treatment effect pattern plot.

PubMed

Lazar, Ann A; Cole, Bernard F; Bonetti, Marco; Gelber, Richard D

2010-10-10

The discovery of biomarkers that predict treatment effectiveness has great potential for improving medical care, particularly in oncology. These biomarkers are increasingly reported on a continuous scale, allowing investigators to explore how treatment efficacy varies as the biomarker values continuously increase, as opposed to using arbitrary categories of expression levels resulting in a loss of information. In the age of biomarkers as continuous predictors (eg, expression level percentage rather than positive v negative), alternatives to such dichotomized analyses are needed. The purpose of this article is to provide an overview of an intuitive statistical approach-the subpopulation treatment effect pattern plot (STEPP)-for evaluating treatment-effect heterogeneity when a biomarker is measured on a continuous scale. STEPP graphically explores the patterns of treatment effect across overlapping intervals of the biomarker values. As an example, STEPP methodology is used to explore patterns of treatment effect for varying levels of the biomarker Ki-67 in the BIG (Breast International Group) 1-98 randomized clinical trial comparing letrozole with tamoxifen as adjuvant therapy for postmenopausal women with hormone receptor-positive breast cancer. STEPP analyses showed patients with higher Ki-67 values who were assigned to receive tamoxifen had the poorest prognosis and may benefit most from letrozole.

Analysis by the Residual Method for Estimate Market Value of Land on the Areas with Mining Exploitation in Subsoil under Future New Building

NASA Astrophysics Data System (ADS)

Gwozdz-Lason, Monika

2017-12-01

This paper attempts to answer some of the following questions: what is the main selling advantage of a plot of land on the areas with mining exploitation? which attributes influence on market value the most? and how calculate the mining influence in subsoil under future new building as market value of plot with commercial use? This focus is not accidental, as the paper sets out to prove that the subsoil load bearing capacity, as directly inferred from the local geotechnical properties with mining exploitation, considerably influences the market value of this type of real estate. Presented in this elaborate analysis and calculations, are part of the ongoing development works which aimed at suggesting a new technology and procedures for estimating the value of the land belonging to the third category geotechnical. Analysed the question was examined both in terms of the theoretical and empirical. On the basis of the analysed code calculations in residual method, numerical, statistical and econometric defined results and final conclusions. A market analysis yielded a group of subsoil stabilization costs which depend on the mining operations interaction, subsoil parameters, type of the contemplated structure, its foundations, selected stabilization method, its overall area and shape.

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

PubMed Central

2016-01-01

Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process. Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism. PMID:27560777

Robust volcano plot: identification of differential metabolites in the presence of outliers.

PubMed

Kumar, Nishith; Hoque, Md Aminul; Sugimoto, Masahiro

2018-04-11

The identification of differential metabolites in metabolomics is still a big challenge and plays a prominent role in metabolomics data analyses. Metabolomics datasets often contain outliers because of analytical, experimental, and biological ambiguity, but the currently available differential metabolite identification techniques are sensitive to outliers. We propose a kernel weight based outlier-robust volcano plot for identifying differential metabolites from noisy metabolomics datasets. Two numerical experiments are used to evaluate the performance of the proposed technique against nine existing techniques, including the t-test and the Kruskal-Wallis test. Artificially generated data with outliers reveal that the proposed method results in a lower misclassification error rate and a greater area under the receiver operating characteristic curve compared with existing methods. An experimentally measured breast cancer dataset to which outliers were artificially added reveals that our proposed method produces only two non-overlapping differential metabolites whereas the other nine methods produced between seven and 57 non-overlapping differential metabolites. Our data analyses show that the performance of the proposed differential metabolite identification technique is better than that of existing methods. Thus, the proposed method can contribute to analysis of metabolomics data with outliers. The R package and user manual of the proposed method are available at https://github.com/nishithkumarpaul/Rvolcano .

Weighing Evidence “Steampunk” Style via the Meta-Analyser

PubMed Central

Bowden, Jack; Jackson, Chris

2016-01-01

ABSTRACT The funnel plot is a graphical visualization of summary data estimates from a meta-analysis, and is a useful tool for detecting departures from the standard modeling assumptions. Although perhaps not widely appreciated, a simple extension of the funnel plot can help to facilitate an intuitive interpretation of the mathematics underlying a meta-analysis at a more fundamental level, by equating it to determining the center of mass of a physical system. We used this analogy to explain the concepts of weighing evidence and of biased evidence to a young audience at the Cambridge Science Festival, without recourse to precise definitions or statistical formulas and with a little help from Sherlock Holmes! Following on from the science fair, we have developed an interactive web-application (named the Meta-Analyser) to bring these ideas to a wider audience. We envisage that our application will be a useful tool for researchers when interpreting their data. First, to facilitate a simple understanding of fixed and random effects modeling approaches; second, to assess the importance of outliers; and third, to show the impact of adjusting for small study bias. This final aim is realized by introducing a novel graphical interpretation of the well-known method of Egger regression. PMID:28003684

Cascading effects of predator activity on tick-borne disease risk.

PubMed

Hofmeester, Tim R; Jansen, Patrick A; Wijnen, Hendrikus J; Coipan, Elena C; Fonville, Manoj; Prins, Herbert H T; Sprong, Hein; van Wieren, Sipke E

2017-07-26

Predators and competitors of vertebrates can in theory reduce the density of infected nymphs (DIN)-an often-used measure of tick-borne disease risk-by lowering the density of reservoir-competent hosts and/or the tick burden on reservoir-competent hosts. We investigated this possible indirect effect of predators by comparing data from 20 forest plots across the Netherlands that varied in predator abundance. In each plot, we measured the density of questing Ixodes ricinus nymphs (DON), DIN for three pathogens, rodent density, the tick burden on rodents and the activity of mammalian predators. We analysed whether rodent density and tick burden on rodents were correlated with predator activity, and how rodent density and tick burden predicted DON and DIN for the three pathogens. We found that larval burden on two rodent species decreased with activity of two predator species, while DON and DIN for all three pathogens increased with larval burden on rodents, as predicted. Path analyses supported an indirect negative correlation of activity of both predator species with DON and DIN. Our results suggest that predators can indeed lower the number of ticks feeding on reservoir-competent hosts, which implies that changes in predator abundance may have cascading effects on tick-borne disease risk. © 2017 The Authors.

Agreement in functional assessment: graphic approaches to displaying respondent effects.

PubMed

Haley, Stephen M; Ni, Pengsheng; Coster, Wendy J; Black-Schaffer, Randie; Siebens, Hilary; Tao, Wei

2006-09-01

The objective of this study was to examine the agreement between respondents of summary scores from items representing three functional content areas (physical and mobility, personal care and instrumental, applied cognition) within the Activity Measure for Postacute Care (AM-PAC). We compare proxy vs. patient report in both hospital and community settings as represented by intraclass correlation coefficients and two graphic approaches. The authors conducted a prospective, cohort study of a convenience sample of adults (n = 47) receiving rehabilitation services either in hospital (n = 31) or community (n = 16) settings. In addition to using intraclass correlation coefficients (ICC) as indices of agreement, we applied two graphic approaches to serve as complements to help interpret the direction and magnitude of respondent disagreements. We created a "mountain plot" based on a cumulative distribution curve and a "survival-agreement plot" with step functions used in the analysis of survival data. ICCs on summary scores between patient and proxy report were physical and mobility ICC = 0.92, personal care and instrumental ICC = 0.93, and applied cognition ICC = 0.77. Although combined respondent agreement was acceptable, graphic approaches helped interpret differences in separate analyses of clinician and family agreement. Graphic analyses allow for a simple interpretation of agreement data and may be useful in determining the meaningfulness of the amount and direction of interrespondent variation.

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

DOE PAGES

Montenegro-Burke, J. Rafael; Phommavongsay, Thiery; Aisporna, Aries E.; ...

2016-08-25

Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process.more » Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism.« less

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Montenegro-Burke, J. Rafael; Phommavongsay, Thiery; Aisporna, Aries E.

Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet with the increasingly growing field of metabolomics and heavy workload of data processing, we designed the first remote metabolomic data screening platform for mobile devices. Two mobile applications (apps), XCMS Mobile and METLIN Mobile, facilitate access to XCMS and METLIN, which are the most important components in the computer-based XCMS Online platforms. These mobile apps allow for the visualization and analysis of metabolic data throughout the entire analytical process.more » Specifically, XCMS Mobile and METLIN Mobile provide the capabilities for remote monitoring of data processing, real time notifications for the data processing, visualization and interactive analysis of processed data (e.g., cloud plots, principle component analysis, box-plots, extracted ion chromatograms, and hierarchical cluster analysis), and database searching for metabolite identification. These apps, available on Apple iOS and Google Android operating systems, allow for the migration of metabolomic research onto mobile devices for better accessibility beyond direct instrument operation. The utility of XCMS Mobile and METLIN Mobile functionalities was developed and is demonstrated here through the metabolomic LC-MS analyses of stem cells, colon cancer, aging, and bacterial metabolism.« less

Climate change at northern latitudes: rising atmospheric humidity decreases transpiration, N-uptake and growth rate of hybrid aspen.

PubMed

Tullus, Arvo; Kupper, Priit; Sellin, Arne; Parts, Leopold; Sõber, Jaak; Tullus, Tea; Lõhmus, Krista; Sõber, Anu; Tullus, Hardi

2012-01-01

At northern latitudes a rise in atmospheric humidity and precipitation is predicted as a consequence of global climate change. We studied several growth and functional traits of hybrid aspen (Populus tremula L.×P. tremuloides Michx.) in response to elevated atmospheric humidity (on average 7% over the ambient level) in a free air experimental facility during three growing seasons (2008-2010) in Estonia, which represents northern temperate climate (boreo-nemoral zone). Data were collected from three humidified (H) and three control (C) plots, and analysed using nested linear models. Elevated air humidity significantly reduced height, stem diameter and stem volume increments and transpiration of the trees whereas these effects remained highly significant also after considering the side effects from soil-related confounders within the 2.7 ha study area. Tree leaves were smaller, lighter and had lower leaf mass per area (LMA) in H plots. The magnitude and significance of the humidity treatment effect--inhibition of above-ground growth rate--was more pronounced in larger trees. The lower growth rate in the humidified plots can be partly explained by a decrease in transpiration-driven mass flow of NO(3) (-) in soil, resulting in a significant reduction in the measured uptake of N to foliage in the H plots. The results suggest that the potential growth improvement of fast-growing trees like aspens, due to increasing temperature and atmospheric CO(2) concentration, might be smaller than expected at high latitudes if a rise in atmospheric humidity simultaneously takes place.

Sap Flow Estimate Of Watershed-Scale Transpiration

NASA Astrophysics Data System (ADS)

Kumagai, T.; Aoki, S.; Shimizu, T.; Otsuki, K.

2006-12-01

The present study examined how to obtain sufficient information to extrapolate watershed-scale transpiration in a Japanese cedar (Cryptomeria japonica D. Don) forest from sap flow measurements of available individual trees. In this study, we conducted measurements of tree biometrics and tree-to-tree and radial variations in xylem sap flux density (Fd) in two different stand plots, an upper slope plot (UP) and lower slope plot (LP), during the growing season with significant variations in environmental factors. The manner in which the mean stand sap flux density (JS) and tree stem allometric relationship (diameter at breast height (DBH) versus sapwood area (AS_tree)) vary between the two stands along the slope of the watershed was then investigated. After these analyses, appropriate sample sizes for estimations of representative JS values in the stand were also determined. The results demonstrated that a unique or general function allowed description of the allometric relationship along the slope, but the data for its formulation needed to be obtained in both UP and LP. They also revealed that JS in UP and LP were almost the same during the study period despite differences in tree density and size between the two plots. This implies that JS measured in a partial stand within a watershed is a reasonable estimator of the values of other stands, and that stand sapwood area calculated by AS_tree is a strong determinant of water-use in a forest watershed. To estimate JS in both an UP and LP, at least 10 trees should be sampled, but not necessarily more than this.

Climate Change at Northern Latitudes: Rising Atmospheric Humidity Decreases Transpiration, N-Uptake and Growth Rate of Hybrid Aspen

PubMed Central

Tullus, Arvo; Kupper, Priit; Sellin, Arne; Parts, Leopold; Sõber, Jaak; Tullus, Tea; Lõhmus, Krista; Sõber, Anu; Tullus, Hardi

2012-01-01

At northern latitudes a rise in atmospheric humidity and precipitation is predicted as a consequence of global climate change. We studied several growth and functional traits of hybrid aspen (Populus tremula L.×P. tremuloides Michx.) in response to elevated atmospheric humidity (on average 7% over the ambient level) in a free air experimental facility during three growing seasons (2008–2010) in Estonia, which represents northern temperate climate (boreo-nemoral zone). Data were collected from three humidified (H) and three control (C) plots, and analysed using nested linear models. Elevated air humidity significantly reduced height, stem diameter and stem volume increments and transpiration of the trees whereas these effects remained highly significant also after considering the side effects from soil-related confounders within the 2.7 ha study area. Tree leaves were smaller, lighter and had lower leaf mass per area (LMA) in H plots. The magnitude and significance of the humidity treatment effect – inhibition of above-ground growth rate – was more pronounced in larger trees. The lower growth rate in the humidified plots can be partly explained by a decrease in transpiration-driven mass flow of NO3 − in soil, resulting in a significant reduction in the measured uptake of N to foliage in the H plots. The results suggest that the potential growth improvement of fast-growing trees like aspens, due to increasing temperature and atmospheric CO2 concentration, might be smaller than expected at high latitudes if a rise in atmospheric humidity simultaneously takes place. PMID:22880067

Analysis of flexible aircraft longitudinal dynamics and handling qualities. Volume 2: Data

NASA Technical Reports Server (NTRS)

Waszak, M. R.; Schmidt, D. K.

1985-01-01

Two analysis methods are applied to a family of flexible aircraft in order to investigate how and when structural (especially dynamic aeroelastic) effects affect the dynamic characteristics of aircraft. The first type of analysis is an open loop modal analysis technique. This method considers the effect of modal residue magnitudes on determining vehicle handling qualities. The second method is a pilot in the loop analysis procedure that considers several closed loop system characteristics. Both analyses indicated that dynamic aeroelastic effects caused a degradation in vehicle tracking performance, based on the evaluation of some simulation results. Volume 2 consists of the presentation of the state variable models of the flexible aircraft configurations used in the analysis applications mode shape plots for the structural modes, numerical results from the modal analysis frequency response plots from the pilot in the loop analysis and a listing of the modal analysis computer program.

Nomogram Method as Means for Resource Potential Efficiency Predicative Aid of Petrothermal Energy

NASA Astrophysics Data System (ADS)

Gabdrakhmanova, K. F.; Izmailova, G. R.; Larin, P. A.; Vasilyeva, E. R.; Madjidov, M. A.; Marupov, S. R.

2018-05-01

The article describes the innovative approach when predicting the resource potential efficiency of petrothermal energy. Various geothermal gradients representative of Bashkortostan and Tatarstan republics regions were considered. With the help of nomograms, the authors analysed fluid temperature dependency graphs at the outlet and the thermal power versus fluid velocity along the wellbore. From the family of graphs plotted by us, velocities corresponding to specific temperature were found. Then, according to thermal power versus velocity curve, power levels corresponding to these velocities relative to the selected fluid temperature were found. On the basis of two dependencies obtained, nomograms were plotted. The result of determining the petrothermal energy production efficiency is a family of isocline lines that enables one to select the optimum temperature and injection rate to obtain the required amount of heat for a particular depth and geothermal gradient.

Program for Weibull Analysis of Fatigue Data

NASA Technical Reports Server (NTRS)

Krantz, Timothy L.

2005-01-01

A Fortran computer program has been written for performing statistical analyses of fatigue-test data that are assumed to be adequately represented by a two-parameter Weibull distribution. This program calculates the following: (1) Maximum-likelihood estimates of the Weibull distribution; (2) Data for contour plots of relative likelihood for two parameters; (3) Data for contour plots of joint confidence regions; (4) Data for the profile likelihood of the Weibull-distribution parameters; (5) Data for the profile likelihood of any percentile of the distribution; and (6) Likelihood-based confidence intervals for parameters and/or percentiles of the distribution. The program can account for tests that are suspended without failure (the statistical term for such suspension of tests is "censoring"). The analytical approach followed in this program for the software is valid for type-I censoring, which is the removal of unfailed units at pre-specified times. Confidence regions and intervals are calculated by use of the likelihood-ratio method.

Item Analyses of Memory Differences

PubMed Central

Salthouse, Timothy A.

2017-01-01

Objective Although performance on memory and other cognitive tests is usually assessed with a score aggregated across multiple items, potentially valuable information is also available at the level of individual items. Method The current study illustrates how analyses of variance with item as one of the factors, and memorability analyses in which item accuracy in one group is plotted as a function of item accuracy in another group, can provide a more detailed characterization of the nature of group differences in memory. Data are reported for two memory tasks, word recall and story memory, across age, ability, repetition, delay, and longitudinal contrasts. Results The item-level analyses revealed evidence for largely uniform differences across items in the age, ability, and longitudinal contrasts, but differential patterns across items in the repetition contrast, and unsystematic item relations in the delay contrast. Conclusion Analyses at the level of individual items have the potential to indicate the manner by which group differences in the aggregate test score are achieved. PMID:27618285

Experimentally reducing species abundance indirectly affects food web structure and robustness.

PubMed

Barbosa, Milton; Fernandes, G Wilson; Lewis, Owen T; Morris, Rebecca J

2017-03-01

Studies on the robustness of ecological communities suggest that the loss or reduction in abundance of individual species can lead to secondary and cascading extinctions. However, most such studies have been simulation-based analyses of the effect of primary extinction on food web structure. In a field experiment we tested the direct and indirect effects of reducing the abundance of a common species, focusing on the diverse and self-contained assemblage of arthropods associated with an abundant Brazilian shrub, Baccharis dracunculifolia D.C. (Asteraceae). Over a 5-month period we experimentally reduced the abundance of Baccharopelma dracunculifoliae (Sternorrhyncha: Psyllidae), the commonest galling species associated with B. dracunculifolia, in 15 replicate plots paired with 15 control plots. We investigated direct effects of the manipulation on parasitoids attacking B. dracunculifoliae, as well as indirect effects (mediated via a third species or through the environment) on 10 other galler species and 50 associated parasitoid species. The experimental manipulation significantly increased parasitism on B. dracunculifoliae in the treatment plots, but did not significantly alter either the species richness or abundance of other galler species. Compared to control plots, food webs in manipulated plots had significantly lower values of weighted connectance, interaction evenness and robustness (measured as simulated tolerance to secondary extinction), even when B. dracunculifoliae was excluded from calculations. Parasitoid species were almost entirely specialized to individual galler species, so the observed effects of the manipulation on food web structure could not have propagated via the documented trophic links. Instead, they must have spread either through trophic links not included in the webs (e.g. shared predators) or non-trophically (e.g. through changes in habitat availability). Our results highlight that the inclusion of both trophic and non-trophic direct and indirect interactions is essential to understand the structure and dynamics of even apparently discrete ecological communities. © 2016 The Authors. Journal of Animal Ecology © 2016 British Ecological Society.

Rebuilding after collapse: evidence for long-term cohort dynamics in the native Hawaiian rain forest

USGS Publications Warehouse

Boehmer, Hans Juergen; Wagner, Helene H.; Jacobi, James D.; Gerrish, Grant C.; Mueller-Dombois, Dieter

2013-01-01

Questions: Do long-term observations in permanent plots confirm the conceptual model of Metrosideros polymorpha cohort dynamics as postulated in 1987? Do regeneration patterns occur independently of substrate age, i.e. of direct volcanic disturbance impact? Location: The windward mountain slopes of the younger Mauna Loa and the older Mauna Kea volcanoes (island of Hawaii, USA). Methods: After widespread forest decline (dieback), permanent plots were established in 1976 in 13 dieback and 13 non-dieback patches to monitor the population structure of M. polymorpha at ca. 5-yr intervals. Within each plot of 20 × 20 m, all trees with DBH >2.5 cm were individually tagged, measured and tree vigour assessed; regeneration was quantified in 16 systematically placed subplots of 3 × 5 m. Data collected in the subplots included the total number of M. polymorpha seedlings and saplings (five stem height classes). Here we analyse monitoring data from six time steps from 1976 to 2003 using repeated measures ANOVA to test specific predictions derived from the 1987 conceptual model. Results: Regeneration was significantly different between dieback and non-dieback plots. In dieback plots, the collapse in the 1970s was followed by a ‘sapling wave’ that by 2003 led to new cohort stands of M. polymorpha. In non-dieback stands, seedling emergence did not result in sapling waves over the same period. Instead, a ‘sapling gap’ (i.e. very few or no M. polymorpha saplings) prevailed as typical for mature stands. Canopy dieback in 1976, degree of recovery by 2003 and the number of living trees in 2003 were unrelated to substrate age. Conclusions: Population development of M. polymorpha supports the cohort dynamics model, which predicts rebuilding of the forest with the same canopy species after dieback. The lack of association with substrate age suggests that the long-term maintenance of cohort structure in M. polymorpha does not depend on volcanic disturbance but may be related to other environmental mechanisms, such as climate anomalies.

Changes in soil carbon and nutrients following 6 years of litter removal and addition in a tropical semi-evergreen rain forest

NASA Astrophysics Data System (ADS)

Tanner, Edmund Vincent John; Sheldrake, Merlin W. A.; Turner, Benjamin L.

2016-11-01

Increasing atmospheric CO2 and temperature may increase forest productivity, including litterfall, but the consequences for soil organic matter remain poorly understood. To address this, we measured soil carbon and nutrient concentrations at nine depths to 2 m after 6 years of continuous litter removal and litter addition in a semi-evergreen rain forest in Panama. Soils in litter addition plots, compared to litter removal plots, had higher pH and contained greater concentrations of KCl-extractable nitrate (both to 30 cm); Mehlich-III extractable phosphorus and total carbon (both to 20 cm); total nitrogen (to 15 cm); Mehlich-III calcium (to 10 cm); and Mehlich-III magnesium and lower bulk density (both to 5 cm). In contrast, litter manipulation did not affect ammonium, manganese, potassium or zinc, and soils deeper than 30 cm did not differ for any nutrient. Comparison with previous analyses in the experiment indicates that the effect of litter manipulation on nutrient concentrations and the depth to which the effects are significant are increasing with time. To allow for changes in bulk density in calculation of changes in carbon stocks, we standardized total carbon and nitrogen on the basis of a constant mineral mass. For 200 kg m-2 of mineral soil (approximately the upper 20 cm of the profile) about 0.5 kg C m-2 was "missing" from the litter removal plots, with a similar amount accumulated in the litter addition plots. There was an additional 0.4 kg C m-2 extra in the litter standing crop of the litter addition plots compared to the control. This increase in carbon in surface soil and the litter standing crop can be interpreted as a potential partial mitigation of the effects of increasing CO2 concentrations in the atmosphere.

The PLOT (Paleolimnological Transect) Project in the Russian Arctic

NASA Astrophysics Data System (ADS)

Gromig, R.; Andreev, A.; Baumer, M.; Bolshiyanov, D.; Fedorov, G.; Frolova, L.; Krastel, S.; Lebas, E.; Ludikova, A.; Melles, M.; Meyer, H.; Nazarova, L.; Pestryakova, L.; Savelieva, L.; Shumilovskikh, L.; Subetto, D.; Wagner, B.; Wennrich, V.

2017-12-01

The joint Russian- German project 'PLOT - Paleolimnological Transec' aims to recover lake sediment sequences along a >6000 km long longitudinal transect across the Eurasian Arctic in order to investigate the Late Quaternary climatic and environmental history. The climate history of the Arctic is of particular interest since it is the region, which is experiencing major impact of the current climate change. The project is funded for three years (2015-2018) by the Russian and German Ministries of Research. Since 2013 extensive fieldwork, including seismic surveys, coring, and hydrological investigations, was carried out at lakes Ladoga (NW Russia, pilot study), Bolshoye Shuchye (Polar Urals), Emanda (Verkhoyansk Range, field campaign planned for August 2017), Levinson-Lessing and Taymyr (Taymyr Peninsula). Fieldwork at lakes Bolshoye Shuchye, Levinson-Lessing and Taymyr was conducted in collaboration with the Russian-Norwegian CHASE (Climate History along the Arctic Seaboard of Eurasia) project. A major objective of the PLOT project was to recover preglacial sediments. A multiproxy approach was applied to the analytical work of all cores, including (bio-)geochemical, sedimentological, geophysical, and biological analyses. First data implies the presence of preglacial sediments in the cores from all lakes so far visited. Age-depth models, based on radiocarbon dating, OSL dating, paleomagnetic measurements, identification of cryptotephra, and varve counting (where applicable), are in progress. Climate variability in the records shall be compared to that recorded at Lake Eĺgygytgyn (NE Russia), which represents the master record for the Siberian Arctic. The outcome of the PLOT project will be a better understanding of the temporal and spatial variability and development of the Arctic climate. Here, we present the major results and first key interpretations of the PLOT project, along with an outlook on the future strategy and foci. First results from lakes Ladoga, Bolshoye Shuchye, Levinson-Lessing and Taymyr will be published in a special journal issue (Boreas) in spring 2018.

Opportunities for Integrated Ecological Analysis across Inland Australia with Standardised Data from Ausplots Rangelands.

PubMed

Guerin, Greg R; Sparrow, Ben; Tokmakoff, Andrew; Smyth, Anita; Leitch, Emrys; Baruch, Zdravko; Lowe, Andrew J

2017-01-01

Australian rangelands ecosystems cover 81% of the continent but are understudied and continental-scale research has been limited in part by a lack of precise data that are standardised between jurisdictions. We present a new dataset from AusPlots Rangelands that enables integrative rangelands analysis due to its geographic scope and standardised methodology. The method provides data on vegetation and soils, enabling comparison of a suite of metrics including fractional vegetation cover, basal area, and species richness, diversity, and composition. Cover estimates are robust and repeatable, allowing comparisons among environments and detection of modest change. The 442 field plots presented here span a rainfall gradient of 129-1437 mm Mean annual precipitation with varying seasonality. Vegetation measurements include vouchered vascular plant species, growth form, basal area, height, cover and substrate type from 1010 point intercepts as well as systematically recorded absences, which are useful for predictive modelling and validation of remote sensing applications. Leaf and soil samples are sampled for downstream chemical and genomic analysis. We overview the sampling of vegetation parameters and environments, applying the data to the question of how species abundance distributions (SADs) vary over climatic gradients, a key question for the influence of environmental change on ecosystem processes. We found linear relationships between SAD shape and rainfall within grassland and shrubland communities, indicating more uneven abundance in deserts and suggesting relative abundance may shift as a consequence of climate change, resulting in altered diversity and ecosystem function. The standardised data of AusPlots enables such analyses at large spatial scales, and the testing of predictions through time with longitudinal sampling. In future, the AusPlots field program will be directed towards improving coverage of space, under-represented environments, vegetation types and fauna and, increasingly, re-sampling of established plots. Providing up-to-date data access methods to enhance re-use is also a priority.

Mayday - integrative analytics for expression data

PubMed Central

2010-01-01

Background DNA Microarrays have become the standard method for large scale analyses of gene expression and epigenomics. The increasing complexity and inherent noisiness of the generated data makes visual data exploration ever more important. Fast deployment of new methods as well as a combination of predefined, easy to apply methods with programmer's access to the data are important requirements for any analysis framework. Mayday is an open source platform with emphasis on visual data exploration and analysis. Many built-in methods for clustering, machine learning and classification are provided for dissecting complex datasets. Plugins can easily be written to extend Mayday's functionality in a large number of ways. As Java program, Mayday is platform-independent and can be used as Java WebStart application without any installation. Mayday can import data from several file formats, database connectivity is included for efficient data organization. Numerous interactive visualization tools, including box plots, profile plots, principal component plots and a heatmap are available, can be enhanced with metadata and exported as publication quality vector files. Results We have rewritten large parts of Mayday's core to make it more efficient and ready for future developments. Among the large number of new plugins are an automated processing framework, dynamic filtering, new and efficient clustering methods, a machine learning module and database connectivity. Extensive manual data analysis can be done using an inbuilt R terminal and an integrated SQL querying interface. Our visualization framework has become more powerful, new plot types have been added and existing plots improved. Conclusions We present a major extension of Mayday, a very versatile open-source framework for efficient micro array data analysis designed for biologists and bioinformaticians. Most everyday tasks are already covered. The large number of available plugins as well as the extension possibilities using compiled plugins and ad-hoc scripting allow for the rapid adaption of Mayday also to very specialized data exploration. Mayday is available at http://microarray-analysis.org. PMID:20214778

Forest dynamics and its driving forces of sub-tropical forest in South China.

PubMed

Ma, Lei; Lian, Juyu; Lin, Guojun; Cao, Honglin; Huang, Zhongliang; Guan, Dongsheng

2016-03-04

Tree mortality and recruitment are key factors influencing forest dynamics, but the driving mechanisms of these processes remain unclear. To better understand these driving mechanisms, we studied forest dynamics over a 5-year period in a 20-ha sub-tropical forest in the Dinghushan Nature Reserve, South China. The goal was to identify determinants of tree mortality/recruitment at the local scale using neighborhood analyses on some locally dominant tree species. Results show that the study plot was more dynamic than some temperate and tropical forests in a comparison to large, long-term forest dynamics plots. Over the 5-year period, mortality rates ranged from 1.67 to 12.33% per year while recruitment rates ranged from 0 to 20.26% per year. Tree size had the most consistent effect on mortality across species. Recruitment into the ≥1-cm size class consistently occurred where local con-specific density was high. This suggests that recruitment may be limited by seed dispersal. Hetero-specific individuals also influenced recruitment significantly for some species. Canopy species had low recruitment into the ≥1-cm size class over the 5-year period. In conclusion, tree mortality and recruitment for sixteen species in this plot was likely limited by seed dispersal and density-dependence.

From ratites to rats: the size of fleshy fruits shapes species' distributions and continental rainforest assembly

PubMed Central

Rossetto, Maurizio; Kooyman, Robert; Yap, Jia-Yee S.; Laffan, Shawn W.

2015-01-01

Seed dispersal is a key process in plant spatial dynamics. However, consistently applicable generalizations about dispersal across scales are mostly absent because of the constraints on measuring propagule dispersal distances for many species. Here, we focus on fleshy-fruited taxa, specifically taxa with large fleshy fruits and their dispersers across an entire continental rainforest biome. We compare species-level results of whole-chloroplast DNA analyses in sister taxa with large and small fruits, to regional plot-based samples (310 plots), and whole-continent patterns for the distribution of woody species with either large (more than 30 mm) or smaller fleshy fruits (1093 taxa). The pairwise genomic comparison found higher genetic distances between populations and between regions in the large-fruited species (Endiandra globosa), but higher overall diversity within the small-fruited species (Endiandra discolor). Floristic comparisons among plots confirmed lower numbers of large-fruited species in areas where more extreme rainforest contraction occurred, and re-colonization by small-fruited species readily dispersed by the available fauna. Species' distribution patterns showed that larger-fruited species had smaller geographical ranges than smaller-fruited species and locations with stable refugia (and high endemism) aligned with concentrations of large fleshy-fruited taxa, making them a potentially valuable conservation-planning indicator. PMID:26645199

From ratites to rats: the size of fleshy fruits shapes species' distributions and continental rainforest assembly.

PubMed

Rossetto, Maurizio; Kooyman, Robert; Yap, Jia-Yee S; Laffan, Shawn W

2015-12-07

Seed dispersal is a key process in plant spatial dynamics. However, consistently applicable generalizations about dispersal across scales are mostly absent because of the constraints on measuring propagule dispersal distances for many species. Here, we focus on fleshy-fruited taxa, specifically taxa with large fleshy fruits and their dispersers across an entire continental rainforest biome. We compare species-level results of whole-chloroplast DNA analyses in sister taxa with large and small fruits, to regional plot-based samples (310 plots), and whole-continent patterns for the distribution of woody species with either large (more than 30 mm) or smaller fleshy fruits (1093 taxa). The pairwise genomic comparison found higher genetic distances between populations and between regions in the large-fruited species (Endiandra globosa), but higher overall diversity within the small-fruited species (Endiandra discolor). Floristic comparisons among plots confirmed lower numbers of large-fruited species in areas where more extreme rainforest contraction occurred, and re-colonization by small-fruited species readily dispersed by the available fauna. Species' distribution patterns showed that larger-fruited species had smaller geographical ranges than smaller-fruited species and locations with stable refugia (and high endemism) aligned with concentrations of large fleshy-fruited taxa, making them a potentially valuable conservation-planning indicator. © 2015 The Author(s).

Plant community influences on soil microfungal assemblages in boreal mixed-wood forests.

PubMed

De Bellis, T; Kernaghan, G; Widden, P

2007-01-01

We studied the relationships between assemblages of soil microfungi and plant communities in the southern boreal mixed-wood forests of Quebec. Sampling took place in 18,100 m2 plots from an existing research site. Plots were separated into three categories based on dominant overstory tree species: (i) trembling aspen, (ii) white birch and (iii) a mixture of white spruce and balsam fir. Within each plot a 1 m2 subplot was established in which the understory herbaceous layer was surveyed and soil cores were collected. Microfungi were isolated from soil cores with the soil-washing technique and isolates were identified morphologically. To support our morphological identifications DNA sequences were obtained for the most abundant microfungi. The most frequently occurring microfungal species were Penicillium thomii, P. spinulosum, P. janthinellum, Penicillium sp., P. melinii, Trichoderma polysporum, T. viride, T. hamatum, Mortierella ramanniana, Geomyces pannorum, Cylindrocarpon didymum, Mortierella sp. and Mucor hiemalis. Multivariate analyses (redundancy analysis followed by variance partitioning) revealed that most of the variation in microfungal communities was explained by understory plant species composition as opposed to soil chemistry or overstory tree species. In this floristically diverse system saprophytic microfungal assemblages were not correlated with the overstory tree species but were significantly correlated with the main understory herbs, thereby reflecting differences at a smaller spatial scale.

CDF-XL: computing cumulative distribution functions of reaction time data in Excel.

PubMed

Houghton, George; Grange, James A

2011-12-01

In experimental psychology, central tendencies of reaction time (RT) distributions are used to compare different experimental conditions. This emphasis on the central tendency ignores additional information that may be derived from the RT distribution itself. One method for analysing RT distributions is to construct cumulative distribution frequency plots (CDFs; Ratcliff, Psychological Bulletin 86:446-461, 1979). However, this method is difficult to implement in widely available software, severely restricting its use. In this report, we present an Excel-based program, CDF-XL, for constructing and analysing CDFs, with the aim of making such techniques more readily accessible to researchers, including students (CDF-XL can be downloaded free of charge from the Psychonomic Society's online archive). CDF-XL functions as an Excel workbook and starts from the raw experimental data, organised into three columns (Subject, Condition, and RT) on an Input Data worksheet (a point-and-click utility is provided for achieving this format from a broader data set). No further preprocessing or sorting of the data is required. With one click of a button, CDF-XL will generate two forms of cumulative analysis: (1) "standard" CDFs, based on percentiles of participant RT distributions (by condition), and (2) a related analysis employing the participant means of rank-ordered RT bins. Both analyses involve partitioning the data in similar ways, but the first uses a "median"-type measure at the participant level, while the latter uses the mean. The results are presented in three formats: (i) by participants, suitable for entry into further statistical analysis; (ii) grand means by condition; and (iii) completed CDF plots in Excel charts.

Statistical design and analysis for plant cover studies with multiple sources of observation errors

USGS Publications Warehouse

Wright, Wilson; Irvine, Kathryn M.; Warren, Jeffrey M .; Barnett, Jenny K.

2017-01-01

Effective wildlife habitat management and conservation requires understanding the factors influencing distribution and abundance of plant species. Field studies, however, have documented observation errors in visually estimated plant cover including measurements which differ from the true value (measurement error) and not observing a species that is present within a plot (detection error). Unlike the rapid expansion of occupancy and N-mixture models for analysing wildlife surveys, development of statistical models accounting for observation error in plants has not progressed quickly. Our work informs development of a monitoring protocol for managed wetlands within the National Wildlife Refuge System.Zero-augmented beta (ZAB) regression is the most suitable method for analysing areal plant cover recorded as a continuous proportion but assumes no observation errors. We present a model extension that explicitly includes the observation process thereby accounting for both measurement and detection errors. Using simulations, we compare our approach to a ZAB regression that ignores observation errors (naïve model) and an “ad hoc” approach using a composite of multiple observations per plot within the naïve model. We explore how sample size and within-season revisit design affect the ability to detect a change in mean plant cover between 2 years using our model.Explicitly modelling the observation process within our framework produced unbiased estimates and nominal coverage of model parameters. The naïve and “ad hoc” approaches resulted in underestimation of occurrence and overestimation of mean cover. The degree of bias was primarily driven by imperfect detection and its relationship with cover within a plot. Conversely, measurement error had minimal impacts on inferences. We found >30 plots with at least three within-season revisits achieved reasonable posterior probabilities for assessing change in mean plant cover.For rapid adoption and application, code for Bayesian estimation of our single-species ZAB with errors model is included. Practitioners utilizing our R-based simulation code can explore trade-offs among different survey efforts and parameter values, as we did, but tuned to their own investigation. Less abundant plant species of high ecological interest may warrant the additional cost of gathering multiple independent observations in order to guard against erroneous conclusions.

Utilizing random forests imputation of forest plot data for landscape-level wildfire analyses

Treesearch

Karin L. Riley; Isaac C. Grenfell; Mark A. Finney; Nicholas L. Crookston

2014-01-01

Maps of the number, size, and species of trees in forests across the United States are desirable for a number of applications. For landscape-level fire and forest simulations that use the Forest Vegetation Simulator (FVS), a spatial tree-level dataset, or “tree list”, is a necessity. FVS is widely used at the stand level for simulating fire effects on tree mortality,...

Clinical Utility of Blood Cell Histogram Interpretation

PubMed Central

Bhagya, S.; Majeed, Abdul

2017-01-01

An automated haematology analyser provides blood cell histograms by plotting the sizes of different blood cells on X-axis and their relative number on Y-axis. Histogram interpretation needs careful analysis of Red Blood Cell (RBC), White Blood Cell (WBC) and platelet distribution curves. Histogram analysis is often a neglected part of the automated haemogram which if interpreted well, has significant potential to provide diagnostically relevant information even before higher level investigations are ordered. PMID:29207767

Clinical Utility of Blood Cell Histogram Interpretation.

PubMed

Thomas, E T Arun; Bhagya, S; Majeed, Abdul

2017-09-01

An automated haematology analyser provides blood cell histograms by plotting the sizes of different blood cells on X-axis and their relative number on Y-axis. Histogram interpretation needs careful analysis of Red Blood Cell (RBC), White Blood Cell (WBC) and platelet distribution curves. Histogram analysis is often a neglected part of the automated haemogram which if interpreted well, has significant potential to provide diagnostically relevant information even before higher level investigations are ordered.

A statistical package for computing time and frequency domain analysis

NASA Technical Reports Server (NTRS)

Brownlow, J.

1978-01-01

The spectrum analysis (SPA) program is a general purpose digital computer program designed to aid in data analysis. The program does time and frequency domain statistical analyses as well as some preanalysis data preparation. The capabilities of the SPA program include linear trend removal and/or digital filtering of data, plotting and/or listing of both filtered and unfiltered data, time domain statistical characterization of data, and frequency domain statistical characterization of data.

VERAView

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Ronald W.; Collins, Benjamin S.; Godfrey, Andrew T.

2016-12-09

In order to support engineering analysis of Virtual Environment for Reactor Analysis (VERA) model results, the Consortium for Advanced Simulation of Light Water Reactors (CASL) needs a tool that provides visualizations of HDF5 files that adhere to the VERAOUT specification. VERAView provides an interactive graphical interface for the visualization and engineering analyses of output data from VERA. The Python-based software provides instantaneous 2D and 3D images, 1D plots, and alphanumeric data from VERA multi-physics simulations.

First annual report of the Botany Field Station

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berry, E.C.; Cline, J.F.

This is the first annual report of the Botany Field Station No. 1. The location, layout and method of irrigating the station are described. The crops grown and their yields are given. Results of analyses for radioactivity are reported in tabular form. No evidence of radioactivity above accepted tolerance levels in foods was obtained for any of the crops tested. A plane table plot of the Field Station and photographs are included.

Detection of colon and rectum cancers by terahertz techniques

NASA Astrophysics Data System (ADS)

Wahaia, Faustino; Valusis, Gintaras; Bernardo, Luis M.; Oliveira, Albino; Macutkevic, Jan; Kasalynas, Irmantas; Seliuta, Dalius

2010-04-01

Based on experimental analyses of colon and rectal tissues by THz spectroscopy and THz imaging, we show it is possible to distinguish between healthy and cancerous zones. Plots of the absorption coefficient and the index of refraction of the healthy and cancer affected tissues as well as 2-D transmission THz images will be presented. The experimental results will be discussed and the conditions for the tissues discrimination will be established.

Seeing the forest for the trees: utilizing modified random forests imputation of forest plot data for landscape-level analyses

Treesearch

Karin L. Riley; Isaac C. Grenfell; Mark A. Finney

2015-01-01

Mapping the number, size, and species of trees in forests across the western United States has utility for a number of research endeavors, ranging from estimation of terrestrial carbon resources to tree mortality following wildfires. For landscape fire and forest simulations that use the Forest Vegetation Simulator (FVS), a tree-level dataset, or “tree list”, is a...

Quark-mass dependence of the H dibaryon in Λ Λ scattering

NASA Astrophysics Data System (ADS)

Yamaguchi, Yasuhiro; Hyodo, Tetsuo

2016-12-01

We study the quark mass dependence of the H dibaryon in the strangeness S =-2 baryon-baryon scattering. A low-energy effective field theory is used to describe the coupled-channel scattering, in which the quark mass dependence is incorporated so as to reproduce the lattice QCD data by the HAL QCD collaboration in the SU(3) limit. We point out the existence of the Castillejo-Dalitz-Dyson pole in the Λ Λ scattering amplitude below the threshold in the SU(3) limit, which may cause the Ramsauer-Townsend effect near the N Ξ threshold at the physical point. The H dibaryon is unbound at the physical point, and a resonance appears just below the N Ξ threshold. As a consequence of the coupled-channel dynamics, the pole associated with the resonance is not continuously connected to the bound state in the SU(3) limit. Through the extrapolation in quark masses, we show that the unitary limit of the Λ Λ scattering is achieved between the physical point and the SU(3) limit. We discuss the possible realization of the "H matter" in the unphysical quark mass region.

Hydrologic data from selected wells in the Helena Valley, Lewis and Clark County, Montana

USGS Publications Warehouse

Moreland, Joe A.; Leonard, R.B.; Reed, T.E.; Clausen, R.O.; Wood, W.A.

1979-01-01

Hydrologic data were collected during 1978-79 to aid in evaluating the hydrologic conditions in shallow aquifers beneath the Helena Valley, Montana. The locations of 52 shallow test wells augered during the study are shown on a map at a scale of 1:48,000. Periodic water-level measurements and water-quality analyses for the test holes are listed in tables. Water temperature, specific conductance, and nitrate concentration are given for water samples collected from 98 domestic wells, and chemical analyses are included for 11 domestic and irrigation wells. In addition, water-level drawdown and recovery data are plotted on graphs for five pumped wells and three observation wells. (Kosco-USGS)

Modelling soil erosion in rainfed vineyards of northeast of Spain under climate change: effects of increasing rainfall intensity

NASA Astrophysics Data System (ADS)

Concepción Ramos, Maria

2017-04-01

This aim of the research was to analyse the effect of rainfall distribution and intensity on soil erosion in vines cultivated in the Mediterranean under the projected climate change scenario. The simulations were done at plot scale using the WEPP model. Climatic data for the period 1996-2014 were obtained from a meteorological station located 6km far from the plot. Soil characteristics such as texture, organic matter content, water retention capacity and infiltration were analysed. Runoff and soil losses were measured at four locations within the plot during 4 years and used to calibrate and validate the model. According to evidences recorded in the area, changes of rainfall intensities of 10 and 20% were considered for different rainfall distributions. The simulations were extended to the predicted changes for 2030, 2050 and 2070 based on the HadGEM2-CC under the Representative Concentration Pathways (RCPs) 8.5 scenario. WEPP model provided a suitable prediction of the seasonal runoff and erosion as simulated relatively well the runoff and erosion of the most important events although some deficiencies were found for those events that produced low runoff. The simulation confirmed the contribution of the extreme events to annual erosion rates in 70%, on average. The model responded to changes in precipitation predicted under a climate change scenario with a decrease of runoff and erosion, and with higher erosion rates for an increase in rainfall intensity. A 10% increase may imply erosion rates up to 22% greater for the scenario 2030, and despite the predicted decrease in precipitation for the scenario 2050, soil losses may be up to 40% greater than at present for some rainfall distributions and intensity rainfall increases of 20%. These findings show the need of considering rainfall intensity as one of the main driven factors when soil erosion rates under climate change are predicted. Keywords: extreme events, rainfall distribution, runoff, soil losses, wines, WEPP.

Publication Bias and Nonreporting Found in Majority of Systematic Reviews and Meta-analyses in Anesthesiology Journals.

PubMed

Hedin, Riley J; Umberham, Blake A; Detweiler, Byron N; Kollmorgen, Lauren; Vassar, Matt

2016-10-01

Systematic reviews and meta-analyses are used by clinicians to derive treatment guidelines and make resource allocation decisions in anesthesiology. One cause for concern with such reviews is the possibility that results from unpublished trials are not represented in the review findings or data synthesis. This problem, known as publication bias, results when studies reporting statistically nonsignificant findings are left unpublished and, therefore, not included in meta-analyses when estimating a pooled treatment effect. In turn, publication bias may lead to skewed results with overestimated effect sizes. The primary objective of this study is to determine the extent to which evaluations for publication bias are conducted by systematic reviewers in highly ranked anesthesiology journals and which practices reviewers use to mitigate publication bias. The secondary objective of this study is to conduct publication bias analyses on the meta-analyses that did not perform these assessments and examine the adjusted pooled effect estimates after accounting for publication bias. This study considered meta-analyses and systematic reviews from 5 peer-reviewed anesthesia journals from 2007 through 2015. A PubMed search was conducted, and full-text systematic reviews that fit inclusion criteria were downloaded and coded independently by 2 authors. Coding was then validated, and disagreements were settled by consensus. In total, 207 systematic reviews were included for analysis. In addition, publication bias evaluation was performed for 25 systematic reviews that did not do so originally. We used Egger regression, Duval and Tweedie trim and fill, and funnel plots for these analyses. Fifty-five percent (n = 114) of the reviews discussed publication bias, and 43% (n = 89) of the reviews evaluated publication bias. Funnel plots and Egger regression were the most common methods for evaluating publication bias. Publication bias was reported in 34 reviews (16%). Thirty-six of the 45 (80.0%) publication bias analyses indicated the presence of publication bias by trim and fill analysis, whereas Egger regression indicated publication bias in 23 of 45 (51.1%) analyses. The mean absolute percent difference between adjusted and observed point estimates was 15.5%, the median was 6.2%, and the range was 0% to 85.5%. Many of these reviews reported following published guidelines such as PRISMA or MOOSE, yet only half appropriately addressed publication bias in their reviews. Compared with previous research, our study found fewer reviews assessing publication bias and greater likelihood of publication bias among reviews not performing these evaluations.

The Effect of Prescribed Burns and Wildfire on Vegetation in Bastrop State Park, TX

NASA Astrophysics Data System (ADS)

Justice, C. J.

2014-12-01

In 2011, central Texas had its worst drought since the 1950's. This, in conjunction with the strong winds produced by Tropical Storm Lee created conditions that made possible the Bastrop County Complex Fire in September 2011. These record-breaking wildfires burned over 95% of the 6,565-acre Bastrop State Park (BSP). Since 2003, BSP had been using prescribed burns as a management practice to reduce fuel load and prevent high severity wildfires. Although these prescribed fires did not prevent the 2011 wildfires they may have mitigated their effects. This study considered the effect of prescribed burn history and wildfire burn severity on vegetation recovery in BSP since the 2011 wildfire. The hypotheses of this study are that prescribed burn history and wildfire burn severity separately and jointly have affected post wildfire vegetation. To test these hypotheses, data were collected in 2013 from 46 plots across BSP using the Fire Effects Monitoring and Inventory (FIREMON) protocol to determine herbaceous plant density, shrub density, overstory density, and midstory tree density. Data were analyzed using analyses of variance (ANOVA) to determine the effects of prescribed fire and wildfire severity on these vegetation measurements. It was found that more severely burned plots had more herbaceous plants, fewer midstory trees, and lower shrub densities than less severely burned plots. Contrary to an initial hypotheses, there were few relationships between prescribed burn history and wildfire effects. The only significant effect detected for prescribed burning was the positive effect of prescribed fire on midstory tree density, but only for plots that were not severely burned in the wildfire. In this system, burn severity had a greater effect on post-wildfire vegetation than prescribed burns.

Halo-independent direct detection analyses without mass assumptions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, Adam J.; Fox, Patrick J.; Kahn, Yonatan

2015-10-01

Results from direct detection experiments are typically interpreted by employing an assumption about the dark matter velocity distribution, with results presented in the m{sub χ}−σ{sub n} plane. Recently methods which are independent of the DM halo velocity distribution have been developed which present results in the v{sub min}− g-tilde plane, but these in turn require an assumption on the dark matter mass. Here we present an extension of these halo-independent methods for dark matter direct detection which does not require a fiducial choice of the dark matter mass. With a change of variables from v{sub min} to nuclear recoil momentummore » (p{sub R}), the full halo-independent content of an experimental result for any dark matter mass can be condensed into a single plot as a function of a new halo integral variable, which we call h-tilde (p{sub R}). The entire family of conventional halo-independent g-tilde (v{sub min}) plots for all DM masses are directly found from the single h-tilde (p{sub R}) plot through a simple rescaling of axes. By considering results in h-tilde (p{sub R}) space, one can determine if two experiments are inconsistent for all masses and all physically possible halos, or for what range of dark matter masses the results are inconsistent for all halos, without the necessity of multiple g-tilde (v{sub min}) plots for different DM masses. We conduct a sample analysis comparing the CDMS II Si events to the null results from LUX, XENON10, and SuperCDMS using our method and discuss how the results can be strengthened by imposing the physically reasonable requirement of a finite halo escape velocity.« less

Selection of nesting habitat by sharp-tailed grouse in the Nebraska sandhills

USGS Publications Warehouse

Prose, Bart L.; Cade, Brian S.; Hein, Dale

2002-01-01

We evaluated nesting habitat selection (disproportionate use compared to availability) by plains sharp-tailed grouse (Tympanuchus phasianellus jamesi) on rangelands grazed by cattle (Bos taurus) relative to height, density, and heterogeneity of residual herbaceous vegetation remaining from previous growing seasons. Residual cover is critical for nesting sharp-tailed grouse and can be lacking on grazed rangelands. Aerial photography and a geographic information system were used to analyze residual cover height classes and several measures of residual cover heterogeneity in nest (n = 38) and random (n = 38) plots. Height classes corresponded to visual obstruction readings (VORs), the height to which total visual obstruction by vegetation occurs. Analyses were conducted for five spatial scales ranging from 1 to 16 ha to test for scale effects on nesting habitat selection. Sharp-tailed grouse selected nesting habitat with more area in tall (greater than or equal to 4 cm VOR) residual cover than at random sites at all scales, less area in short residual cover (less than 2 cm VOR) at the I-ha scale, and less area in short and medium (2 to 3.9 cm YOR) residual cover at the 2- through 16-ha scales. Selection of shrub habitat containing patches of shrubs was evident only at the 16-ha scale. Patches of tall residual cover were larger in nest plots than in random plots at the 8- and 16-ha scales, and patches of short cover were smaller in nest plots at the I-ha scale. Two scales of pattern defined by mean patch size were detected for overall residual cover, but did not relate to nesting habitat selection.

Halo-independent direct detection analyses without mass assumptions

DOE PAGES

Anderson, Adam J.; Fox, Patrick J.; Kahn, Yonatan; ...

2015-10-06

Results from direct detection experiments are typically interpreted by employing an assumption about the dark matter velocity distribution, with results presented in the m χ – σ n plane. Recently methods which are independent of the DM halo velocity distribution have been developed which present results in the v min – g ~ plane, but these in turn require an assumption on the dark matter mass. Here we present an extension of these halo-independent methods for dark matter direct detection which does not require a fiducial choice of the dark matter mass. With a change of variables from v minmore » to nuclear recoil momentum (p R), the full halo-independent content of an experimental result for any dark matter mass can be condensed into a single plot as a function of a new halo integral variable, which we call tilde h(p R). The entire family of conventional halo-independent tilde g ~(v min) plots for all DM masses are directly found from the single tilde h ~(p R) plot through a simple rescaling of axes. By considering results in tildeh ~(p R) space, one can determine if two experiments are inconsistent for all masses and all physically possible halos, or for what range of dark matter masses the results are inconsistent for all halos, without the necessity of multiple tilde g ~(v min) plots for different DM masses. As a result, we conduct a sample analysis comparing the CDMS II Si events to the null results from LUX, XENON10, and SuperCDMS using our method and discuss how the results can be strengthened by imposing the physically reasonable requirement of a finite halo escape velocity.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Horn, Scott; Hanula, James, L.

Abstract This study determined if short-term removal of coarse woody debris would reduce prey available to red-cockaded woodpeckers (Picoides borealis Vieillot) and other bark-foraging birds at the Savannah River Site in Aiken and Barnwell counties, SC. All coarse woody debris was removed from four 9-ha plots of mature loblolly pine (Pinus taeda L.) in 1997 and again in 1998. We sampled arthropods in coarse woody debris removal and control stands using crawl traps that captured arthropods crawling up tree boles, burlap bands wrapped around trees, and cardboard panels placed on the ground. We captured 27 orders and 172 families ofmore » arthropods in crawl traps whereas 20 arthropod orders were observed under burlap bands and cardboard panels. The most abundant insects collected from crawl traps were aphids (Homoptera: Aphididae) and ants (Hymenoptera: Forrnicidae). The greatest biomass was in the wood cockroaches (Blattaria: Blattellidae), caterpillars (Lepidoptera) in the Family Noctuidae, and adult weevils (Coleoptera: Curculionidae). The most common group observed underneath cardboard panels was lsoptera (termites), and the most common taxon under burlap bands was wood cockroaches. Overall, arthropod abundance and biomass captured in crawl traps was similar in control and removal plots. In contrast, we observed more arthropods under burlap bands (mean & SE; 3,021.5 k 348.6, P= 0.03) and cardboard panels (3,537.25 k 432.4, P= 0.04) in plots with coarse woody debris compared with burlap bands (2325 + 171.3) and cardboard panels (2439.75 + 288.9) in plots where coarse woody debris was removed. Regression analyses showed that abundance beneath cardboard panels was positively correlated with abundance beneath burlap bands demonstrating the link between abundance on the ground with that on trees. Our results demonstrate that short-term removal of coarse woody debris from pine forests reduced overall arthropod availability to bark-foraging birds.« less

Simulation of water flow and nitrogen transport for a Bulgarian experimental plot using SWAP and ANIMO models.

PubMed

Marinov, Dimitar; Querner, Erik; Roelsma, Jan

2005-04-01

Unsaturated zone models are useful tools in predicting effects of measures and can be used to optimise agricultural practice aiming to minimise the impact on the environment. However, current soil models have a varying degree of abstraction level referring to simulated processes in time and space. In the framework of an EU funded project the SWAP (Soil-Water-Atmosphere-Plant) and ANIMO (Agricultural-Nutrient-Model) models were tested for an experimental arable plot in Bulgaria. SWAP was used to simulate water flow in the soil while ANIMO describes nitrogen movement and transformations. The objectives of this study are: (i) to show results of the combined application of water and nitrogen dynamics of originally Dutch models SWAP and ANIMO for specific Bulgarian soil and hydrological conditions; (ii) to calibrate and evaluate SWAP and ANIMO models by comparing numerical results with field measurements collected for an arable field in western Bulgaria and (iii) to analyse possible contamination of groundwater due to agricultural practice in the considered region. Further a short description of the experimental plot, as well as information about parameters of the investigated soil profiles, is provided. The obtained SWAP results evidenced that the model gives sufficient adaptation for soil water dynamics. The simulations of ANIMO for nitrogen cycle show greater divergence with observations but are satisfactory precise for the purposes of assessing land use impact on groundwater quality. In general, differences between model results and field measurements do not exceed 10-15%. For the experimental plot predictions indicate nitrate-N concentrations less then 5 mg/l in deeper soil compartments and low downward annual flux containing 0.133 kg N/ha. These results indicate that there is no serious pollution of the shallow groundwater table by nitrogen resulting from land use and agricultural activities.

Variation in hospital mortality in an Australian neonatal intensive care unit network.

PubMed

Abdel-Latif, Mohamed E; Nowak, Gen; Bajuk, Barbara; Glass, Kathryn; Harley, David

2018-07-01

Studying centre-to-centre (CTC) variation in mortality rates is important because inferences about quality of care can be made permitting changes in practice to improve outcomes. However, comparisons between hospitals can be misleading unless there is adjustment for population characteristics and severity of illness. We sought to report the risk-adjusted CTC variation in mortality among preterm infants born <32 weeks and admitted to all eight tertiary neonatal intensive care units (NICUs) in the New South Wales and the Australian Capital Territory Neonatal Network (NICUS), Australia. We analysed routinely collected prospective data for births between 2007 and 2014. Adjusted mortality rates for each NICU were produced using a multiple logistic regression model. Output from this model was used to construct funnel plots. A total of 7212 live born infants <32 weeks gestation were admitted consecutively to network NICUs during the study period. NICUs differed in their patient populations and severity of illness.The overall unadjusted hospital mortality rate for the network was 7.9% (n=572 deaths). This varied from 5.3% in hospital E to 10.4% in hospital C. Adjusted mortality rates showed little CTC variation. No hospital reached the +99.8% control limit level on adjusted funnel plots. Characteristics of infants admitted to NICUs differ, and comparing unadjusted mortality rates should be avoided. Logistic regression-derived risk-adjusted mortality rates plotted on funnel plots provide a powerful visual graphical tool for presenting quality performance data. CTC variation is readily identified, permitting hospitals to appraise their practices and start timely intervention. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Analysis of postfire vegetation dynamics of Mediterranean shrub species based on terrestrial and NDVI data.

PubMed

Hernández-Clemente, Rocío; Cerrillo, R M Navarro; Hernández-Bermejo, J E; Royo, S Escuin; Kasimis, N A

2009-05-01

The present study offers an analysis of regeneration patterns and diversity dynamics after a wildfire, which occurred in 1993 and affected about 7000 ha in southern Spain. The aim of the work was to analyze the rule in the succession of shrub species after fire, relating it to the changes registered in the Normalized Difference Vegetation Index (NDVI). Fractional vegetation cover was recorded from permanent plots in 2000 and 2005. NDVI data related to each time were obtained from Landsat images. Both data sets, from fieldwork and remote sensing, were analyzed through statistical and quantitative analyses and then correlated. Results have permitted the description of the change in plant cover and species composition on a global and plot scale. It can be affirmed that, from the seventh to the twelfth year after the fire, the floristic composition within the burned area remained unchanged at a global level. However, on a smaller scale (plot level), the major shrub species, Ulex parviflorus, Rosmarinus officinalis, and Cistus clusii, underwent significant changes. The regeneration dynamics established by these species conditioned plant species composition and, consequently, diversity indexes such as Shannon (H) and Simpson (D). The changes recorded in the NDVI values corresponding to the surveyed plots were highly correlated with those found in the regrowth of the main species. Areas dominated by U. parviflorus in a senile phase were related to a decrease in NDVI values and an increase in the number of species. This result describes the successional dynamics; the dryness of the main colonizer shrub species is allowing the regrowth and re-establishment of other species. Within the study area, NDVI shows sensitivity to postfire plant cover changes and indirectly expresses the diversity dynamics.

Post-fire soil nutrient redistribution in northern Chihuahuan Desert

NASA Astrophysics Data System (ADS)

Wang, G.; Li, J. J.; Ravi, S.; Sankey, J. B.; Duke, D.; Gonzales, H. B.; Van Pelt, S.

2016-12-01

The desert grassland in the southwestern US has undergone dramatic land degradation with woody shrub encroachment over the last 150 years. Wind erosion and periodic fires are major drivers of vegetation dynamics in these ecosystems. Due to climate change and anthropogenic disturbances, many drylands are undergoing changes in fire regimes, which can largely alter the nutrient loss rate as well as the soil resource heterogeneity. In this study, we used manipulative field experiments, laboratory and geostatistical analyses to investigate the distribution of fertile islands, nutrient loss rate and spatial variation. Replicated burned and control experimental plots were set up in a desert grassland in northern Chihuahuan Desert in March 2016. Windblown sediments were monitored by multiple MWAC sediment collectors on each plot. Surface soil samples, with their locations accurately recorded (i.e., under shrub, under grass, and bare interspace) were collected twice per year in spring and again in summer after the experimental setup. Our preliminary results show that the spatial heterogeneity of soil C and N in the burned plots has changed notably compared to the control plots. Our results further demonstrated that areas with burned shrubs is most vulnerable to wind erosion, therefore the soil nutrient loss is most significant, almost five times of the nutrient loss rate of bare areas. Interspace bare areas is in the lowest micro-land and some of the surface has caliche, which makes the surface resistant to wind erosion. And areas with burned grass receive the lightest wind erosion and nutrient loss, around one third of the erosion on bare areas, because burned grasses still cover the surface and the dead bodies can eliminate wind erosion to a large extent. Hence, periodic fire in desert grassland favors the evenness distribution of soil nutrients and can retard the shrub encroachment process.

Selective Control of Eurasian Watermilfoil and Curlyleaf Pondweed in Noxon Rapids Reservoir, Montana: Herbicide Small-Plot Evaluations, 2010-2011

DTIC Science & Technology

2014-03-01

Nitella sp. Stonewort Potamogeton crispus L. Curlyleaf pondweed Potamogeton foliosus Raf. Leafy pondweed Potamogeton illinoensis Morong Illinois...paired t-test. All analyses were conducted using SAS® analytical software ( Cary , North Carolina), at a p < 0.05 level of significance. ERDC/EL TR-14...Stonewort 0 6 0 Potamogeton crispus L. Curlyleaf pondweed 77 11† 37* Potamogeton foliosus Raf. Leafy pondweed 8 2 13 Potamogeton illinoensis

Analyzing Feedback Control Systems

NASA Technical Reports Server (NTRS)

Bauer, Frank H.; Downing, John P.

1987-01-01

Interactive controls analysis (INCA) program developed to provide user-friendly environment for design and analysis of linear control systems, primarily feedback control. Designed for use with both small- and large-order systems. Using interactive-graphics capability, INCA user quickly plots root locus, frequency response, or time response of either continuous-time system or sampled-data system. Configuration and parameters easily changed, allowing user to design compensation networks and perform sensitivity analyses in very convenient manner. Written in Pascal and FORTRAN.

Dose response explorer: an integrated open-source tool for exploring and modelling radiotherapy dose volume outcome relationships

NASA Astrophysics Data System (ADS)

El Naqa, I.; Suneja, G.; Lindsay, P. E.; Hope, A. J.; Alaly, J. R.; Vicic, M.; Bradley, J. D.; Apte, A.; Deasy, J. O.

2006-11-01

Radiotherapy treatment outcome models are a complicated function of treatment, clinical and biological factors. Our objective is to provide clinicians and scientists with an accurate, flexible and user-friendly software tool to explore radiotherapy outcomes data and build statistical tumour control or normal tissue complications models. The software tool, called the dose response explorer system (DREES), is based on Matlab, and uses a named-field structure array data type. DREES/Matlab in combination with another open-source tool (CERR) provides an environment for analysing treatment outcomes. DREES provides many radiotherapy outcome modelling features, including (1) fitting of analytical normal tissue complication probability (NTCP) and tumour control probability (TCP) models, (2) combined modelling of multiple dose-volume variables (e.g., mean dose, max dose, etc) and clinical factors (age, gender, stage, etc) using multi-term regression modelling, (3) manual or automated selection of logistic or actuarial model variables using bootstrap statistical resampling, (4) estimation of uncertainty in model parameters, (5) performance assessment of univariate and multivariate analyses using Spearman's rank correlation and chi-square statistics, boxplots, nomograms, Kaplan-Meier survival plots, and receiver operating characteristics curves, and (6) graphical capabilities to visualize NTCP or TCP prediction versus selected variable models using various plots. DREES provides clinical researchers with a tool customized for radiotherapy outcome modelling. DREES is freely distributed. We expect to continue developing DREES based on user feedback.

Changes in DNA methylation fingerprint of Quercus ilex trees in response to experimental field drought simulating projected climate change.

PubMed

Rico, L; Ogaya, R; Barbeta, A; Peñuelas, J

2014-03-01

Rapid genetic changes in plants have been reported in response to current climate change. We assessed the capacity of trees in a natural forest to produce rapid acclimation responses based on epigenetic modifications. We analysed natural populations of Quercus ilex, the dominant tree species of Mediterranean forests, using the methylation-sensitive amplified polymorphism (MSAP) technique to assess patterns and levels of methylation in individuals from unstressed forest plots and from plots experimentally exposed to drought for 12 years at levels projected for the coming decades. The percentage of hypermethylated loci increased, and the percentage of fully methylated loci clearly decreased in plants exposed to drought. Multivariate analyses exploring the status of methylation at MSAP loci also showed clear differentiation depending on stress. The PCA scores for the MSAP profiles clearly separated the genetic from the epigenetic structure, and also significantly separated the samples within each group in response to drought. Changes in DNA methylation highlight the large capacity of plants to rapidly acclimate to changing environmental conditions, including trees with long life spans, and our results demonstrate those changes. These changes, although unable to prevent the decreased growth and higher mortality associated with this experimental drought, occurred together with a dampening in such decreases as the long-term treatment progressed. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

[Clinical research XXIII. From clinical judgment to meta-analyses].

PubMed

Rivas-Ruiz, Rodolfo; Castelán-Martínez, Osvaldo D; Pérez-Rodríguez, Marcela; Palacios-Cruz, Lino; Noyola-Castillo, Maura E; Talavera, Juan O

2014-01-01

Systematic reviews (SR) are studies made in order to ask clinical questions based on original articles. Meta-analysis (MTA) is the mathematical analysis of SR. These analyses are divided in two groups, those which evaluate the measured results of quantitative variables (for example, the body mass index -BMI-) and those which evaluate qualitative variables (for example, if a patient is alive or dead, or if he is healing or not). Quantitative variables generally use the mean difference analysis and qualitative variables can be performed using several calculations: odds ratio (OR), relative risk (RR), absolute risk reduction (ARR) and hazard ratio (HR). These analyses are represented through forest plots which allow the evaluation of each individual study, as well as the heterogeneity between studies and the overall effect of the intervention. These analyses are mainly based on Student's t test and chi-squared. To take appropriate decisions based on the MTA, it is important to understand the characteristics of statistical methods in order to avoid misinterpretations.

Ecological risks of Aluminum production and contaminated area by red mud in Western Hungary (Ajka)

NASA Astrophysics Data System (ADS)

Rasulov, Oqil; Horváth, Adrienn; Bidló, András; Winkler, Dániel

2016-04-01

In October 2010, Hungary experienced one of the most severe environmental disasters: the dam wall of a red mud depository of an alumina plant in collapsed and more than 1 million m3 of toxic sludge flooded the surrounding area. Red mud is a strongly alkaline (pH of 9-12.5) by-product due to the high NaOH content. Apart from residual minerals and oxides, its components also include heavy metals such as Cu, Zn, Cd, Hg, Pb, Ni, Co. As it has already been assessed, red mud had considerable effect on soil properties and thus on soil biodiversity. The aim of our study was to determine the aftereffects of red mud pollution on the soil mesofauna (Collembola). Study plots were selected in the area affected by the toxic flood, in agricultural and grassland habitats, at different distances (0.3 to 12.5 km) from the contamination source. Control plots of each habitat types were selected for comparative analyses. Soil samples were taken during the summer of 2015, five years after the red mud disaster. From each of the selected plots, 5 soil cores of 100 cm3 volume (3.6 cm in diameter and 10 cm in depth) were sampled from which springtails were extracted within 14 days using a modified Tullgren apparatus. Simultaneously with the Collembola sampling, we collected soil samples on each plots in order to determine soil properties (pH, CaCO3, particle size distribution) and the degree of heavy metal pollution. 25 heavy metals were measured (including total Hg) following the method of total (cc. HNO3 + H2O2-soluble) and bioavailable (NH4-acetate + EDTA-soluble) element content using ICP-OES and AMA 254. The studied habitats presented neutral to moderately alkaline soils (pH 7.2-8.1). Total metal content was higher in the plots formerly affected by red mud flood. The Hg concentration ranged from 0.023 to 1.167 mg.kg-1, exceeding the threshold concentration (0.5 mg.kg-1) defined by Hungarian legislation for toxic trace metals in soil. The collected 1442 Collembola specimens belong to 32 species. Species richness and diversity were the highest in the uncontaminated grassland plots. Abundance was the lowest in the polluted and intensively managed agricultural plots (1167±433 ind./m2), while the most abundant community was found the control grassland plots reaching 10233±1567 ind./m2. Community structure comparison was estimated using cluster analysis based on the Bray-Curtis index, which well emphasises the difference between the habitat types, as well as the separation of the polluted and control sites. CCA analysis revealed that the most sensitive species to the red mud pollution and thus to the increased heavy metal concentration were Mesaphorura macrochaeta and Sminthurinus elegans, while Brachystomella parvula and most Protaphorura spp. appeared to be more tolerant to the changed soil conditions.

Soil microbiological properties and enzymatic activities of long-term post-fire recovery in dry and semiarid Aleppo pine (Pinus halepensis M.) forest stands

NASA Astrophysics Data System (ADS)

Hedo, J.; Lucas-Borja, M. E.; Wic, C.; Andrés-Abellán, M.; de Las Heras, J.

2015-02-01

Wildfires affecting forest ecosystems and post-fire silvicultural treatments may cause considerable changes in soil properties. The capacity of different microbial groups to recolonise soil after disturbances is crucial for proper soil functioning. The aim of this work was to investigate some microbial soil properties and enzyme activities in semiarid and dry Aleppo pine (Pinus halepensis M.) forest stands. Different plots affected by a wildfire event 17 years ago without or with post-fire silvicultural treatments 5 years after the fire event were selected. A mature Aleppo pine stand, unaffected by wildfire and not thinned was used as a control. Physicochemical soil properties (soil texture, pH, carbonates, organic matter, electrical conductivity, total N and P), soil enzymes (urease, phosphatase, β-glucosidase and dehydrogenase activities), soil respiration and soil microbial biomass carbon were analysed in the selected forests areas and plots. The main finding was that long time after this fire event produces no differences in the microbiological soil properties and enzyme activities of soil after comparing burned and thinned, burned and not thinned, and mature plots. Moreover, significant site variation was generally seen in soil enzyme activities and microbiological parameters. We conclude that total vegetation recovery normalises post-fire soil microbial parameters, and that wildfire and post-fire silvicultural treatments are not significant factors affecting soil properties after 17 years.

Reforestation Sites Show Similar and Nested AMF Communities to an Adjacent Pristine Forest in a Tropical Mountain Area of South Ecuador

PubMed Central

Haug, Ingeborg; Setaro, Sabrina; Suárez, Juan Pablo

2013-01-01

Arbuscular mycorrhizae are important for growth and survival of tropical trees. We studied the community of arbuscular mycorrhizal fungi in a tropical mountain rain forest and in neighbouring reforestation plots in the area of Reserva Biológica San Francisco (South Ecuador). The arbuscular mycorrhizal fungi were analysed with molecular methods sequencing part of the 18 S rDNA. The sequences were classified as Operational Taxonomic Units (OTUs). We found high fungal species richness with OTUs belonging to Glomerales, Diversisporales and Archaeosporales. Despite intensive sampling, the rarefaction curves are still unsaturated for the pristine forest and the reforestation plots. The communities consisted of few frequent and many rare species. No specific interactions are recognizable. The plant individuals are associated with one to ten arbuscular mycorrhizal fungi and mostly with one to four. The fungal compositions associated with single plant individuals show a great variability and variety within one plant species. Planted and naturally occurring plants show high similarities in their fungal communities. Pristine forest and reforestation plots showed similar richness, similar diversity and a significantly nested structure of plant-AMF community. The results indicate that small-scale fragmentation presently found in this area has not destroyed the natural AMF community, at least yet. Thus, the regeneration potential of natural forest vegetation at the tested sites is not inhibited by a lack of appropriate mycobionts. PMID:23671682

Complete suite of geochemical values computed using wireline logs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lancaster, J.R.; Atkinson, A.

1996-12-31

Geochemical values of {open_quotes}black shale{close_quotes} source rocks can be computed from a complete suite of wireline log data. The computed values are: Total Organic Carbon (Wt%). S1, S2, S3, Hydrogen Index, Oxygen Index, Atomic H/C and O/C ratios, Genetic Potential (S1+S2), S2/S3, and Transfomation Ratio (S1/(S1+S2)). The results are most reliable when calibrated to laboratory analyses of samples in the study area. However, in the absence of samples, reasonable estimates can be made using calibration data from analogous depositional and thermal environments and/or professional judgement and experience. The evaluations provide answers to critical geochemical questions relative to: (1) Organic Mattermore » Quantity; T.O.C. (Wt%), S1, and S2. (2) Kerogen Types; I, II, and III, based on T.O.C. vs S2 cross plot and the van Krevelen diagram of Atomic O/C vs Atomic H/C ratios. (3) Thermal Maturation levels; Transfomation Ratio can be converted to Level of Organic Metamorphism (LOM), pyrolysis Tmax (degC), Vitrinite Reflectance (Ro), Time Temperature Index (TTI) and others. Various analog plots and cross plots can be prepared for interpretation. Case history examples are shown and discussed. Lowstand fan deposits on Barbados were studied in outcrop to construct a conceptual reservoir model for prediction of facies assemblages.« less

Complete suite of geochemical values computed using wireline logs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lancaster, J.R.; Atkinson, A.

1996-01-01

Geochemical values of [open quotes]black shale[close quotes] source rocks can be computed from a complete suite of wireline log data. The computed values are: Total Organic Carbon (Wt%). S1, S2, S3, Hydrogen Index, Oxygen Index, Atomic H/C and O/C ratios, Genetic Potential (S1+S2), S2/S3, and Transfomation Ratio (S1/(S1+S2)). The results are most reliable when calibrated to laboratory analyses of samples in the study area. However, in the absence of samples, reasonable estimates can be made using calibration data from analogous depositional and thermal environments and/or professional judgement and experience. The evaluations provide answers to critical geochemical questions relative to: (1)more » Organic Matter Quantity; T.O.C. (Wt%), S1, and S2. (2) Kerogen Types; I, II, and III, based on T.O.C. vs S2 cross plot and the van Krevelen diagram of Atomic O/C vs Atomic H/C ratios. (3) Thermal Maturation levels; Transfomation Ratio can be converted to Level of Organic Metamorphism (LOM), pyrolysis Tmax (degC), Vitrinite Reflectance (Ro), Time Temperature Index (TTI) and others. Various analog plots and cross plots can be prepared for interpretation. Case history examples are shown and discussed. Lowstand fan deposits on Barbados were studied in outcrop to construct a conceptual reservoir model for prediction of facies assemblages.« less

Assessment of Unmanned Aerial Vehicles Imagery for Quantitative Monitoring of Wheat Crop in Small Plots

PubMed Central

Lelong, Camille C. D.; Burger, Philippe; Jubelin, Guillaume; Roux, Bruno; Labbé, Sylvain; Baret, Frédéric

2008-01-01

This paper outlines how light Unmanned Aerial Vehicles (UAV) can be used in remote sensing for precision farming. It focuses on the combination of simple digital photographic cameras with spectral filters, designed to provide multispectral images in the visible and near-infrared domains. In 2005, these instruments were fitted to powered glider and parachute, and flown at six dates staggered over the crop season. We monitored ten varieties of wheat, grown in trial micro-plots in the South-West of France. For each date, we acquired multiple views in four spectral bands corresponding to blue, green, red, and near-infrared. We then performed accurate corrections of image vignetting, geometric distortions, and radiometric bidirectional effects. Afterwards, we derived for each experimental micro-plot several vegetation indexes relevant for vegetation analyses. Finally, we sought relationships between these indexes and field-measured biophysical parameters, both generic and date-specific. Therefore, we established a robust and stable generic relationship between, in one hand, leaf area index and NDVI and, in the other hand, nitrogen uptake and GNDVI. Due to a high amount of noise in the data, it was not possible to obtain a more accurate model for each date independently. A validation protocol showed that we could expect a precision level of 15% in the biophysical parameters estimation while using these relationships. PMID:27879893

A mechanistic approach to studies of the possible digestion of retrograded starch by α-amylase revealed using a log of slope (LOS) plot

PubMed Central

Patel, Hamung; Day, Richard; Butterworth, Peter J.; Ellis, Peter R.

2014-01-01

The rate and extent of digestibility of starch were analysed using the logarithm of the slope (LOS) method. Digestibility curves with α-amylase were obtained for starches in their native, gelatinised and 24 h retrograded form. A LOS plot of the digestibility curves was then constructed, which allowed the rate constant (k) and the concentration of the product at the end of the reaction (C∞) to be calculated. It also allowed the identification of rapid and slow phases in starch digestion. Upon gelatinisation, both k and C∞ increased with dramatic changes notably in C∞; however after starch samples had been stored for 24 h at room temperature, k was not affected but C∞ decreased. This suggests that retrograded starch is virtually inert to amylase action. Both k and C∞ were strongly related to the increase in degree of order of the α-glucan chains, monitored by FTIR-ATR spectroscopy, in retrograded starch. PMID:25256473

SPRUCE Deep Peat Heating (DPH) to Whole Ecosystem Warming (WEW) Metagenomes for Peat Samples Collected June 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kluber, Laurel A; Yip, Daniel Z; Yang, Zamin K

This data set provides links to the results of metagenomic analyses of 44 peat samples collected on 13 June 2016 from SPRUCE experiment treatment and ambient plots. Experimental plots had received approximately 24 months of belowground warming (deep peat heating (DPH), Hanson et al. 2015) with the last 9 of those months including air warming for implementation of whole ecosystems warming (WEW – Hanson et al. 2016). WEW Metagenomes: Data from these metagenomes are archived in the U.S. Department of Energy Joint Genome Institute (DOE JGI) Integrated Microbial Genomes (IMG) system (http://img.jgi.doe.gov/) and are available at the accession numbers providedmore » below (Table 2) and in the accompanying inventory file. The easiest way to find results on IMG is at this link, https://img.jgi.doe.gov/cgi-bin/m/main.cgi, and then enter “June2016WEW” as a search term in the “Quick Genome Search:” box at the top of the page.« less

Forest stand growth dynamics in Central Europe have accelerated since 1870

PubMed Central

Pretzsch, Hans; Biber, Peter; Schütze, Gerhard; Uhl, Enno; Rötzer, Thomas

2014-01-01

Forest ecosystems have been exposed to climate change for more than 100 years, whereas the consequences on forest growth remain elusive. Based on the oldest existing experimental forest plots in Central Europe, we show that, currently, the dominant tree species Norway spruce and European beech exhibit significantly faster tree growth (+32 to 77%), stand volume growth (+10 to 30%) and standing stock accumulation (+6 to 7%) than in 1960. Stands still follow similar general allometric rules, but proceed more rapidly through usual trajectories. As forest stands develop faster, tree numbers are currently 17–20% lower than in past same-aged stands. Self-thinning lines remain constant, while growth rates increase indicating the stock of resources have not changed, while growth velocity and turnover have altered. Statistical analyses of the experimental plots, and application of an ecophysiological model, suggest that mainly the rise in temperature and extended growing seasons contribute to increased growth acceleration, particularly on fertile sites. PMID:25216297

Effects of ungulate disturbance and weather variation on Pediocactus winkleri: insights from long-term monitoring

USGS Publications Warehouse

Clark, Deborah J.; Clark, Thomas O.; Duniway, Michael C.; Flagg, Cody B.

2015-01-01

Population dynamics and effects of large ungulate disturbances on Winkler cactus (Pediocactus winkleri K.D. Heil) were documented annually over a 20-year time span at one plot within Capitol Reef National Park, Utah. This cactus species was federally listed as threatened in 1998. The study began in 1995 to gain a better understanding of life history aspects and threats to this species. Data were collected annually in early spring and included diameter, condition, reproductive structures, mortality, recruitment, and disturbance by large ungulates. We used odds ratio and probability model analyses to determine effects of large ungulate trampling and weather on these cacti. During the study, plot population declined by 18%, with trampling of cactus, low precipitation, and cold spring temperatures implicated as causal factors. Precipitation and temperature affected flowering, mortality, and recruitment. Large ungulate disturbances increased mortality and reduced the probability of flowering. These results suggest that large ungulate disturbances and recent climate regimes have had an adverse impact on long-term persistence of this cactus.

Comparative speaking, shouting and singing voice range profile measurement: physiological and pathological aspects.

PubMed

Hacki, T

1996-01-01

The Voice Range Profile (VRP) measurement offers a method for the investigation of voice modalities i.e. speaking voice, shouting voice and singing voice in their mutual pitch and intensity relations. The parameters FO and SPL are evaluated by means of automatic pitch and SPL measurements from (1) sustained phonation /a:/ in the speaker's natural pitch and intensity range, (2) the continuous speaking voice beginning with Pianissimo up to Fortissimo, (3) the shouting voice. Vocal intensity is plotted vertically, vocal pitch horizontally. The displays of the vocal intensity versus fundamental frequency are defined as singing voice range profile (VRP), speaking VRP and shouting VRP. The VRPs are superimposed on the same plot. Their form, their shape and their position to each other are analysed. The physiological relationships between the VRPs of the different voice modalities to each other are defined. The pathological relationships between the VRPs (i.e. reduction, shifting) give information about etiology and pathomechanism of voice disorders.

Continuous wavelet transform based time-scale and multifractal analysis of the nonlinear oscillations in a hollow cathode glow discharge plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nurujjaman, Md.; Narayanan, Ramesh; Iyengar, A. N. Sekar

2009-10-15

Continuous wavelet transform (CWT) based time-scale and multifractal analyses have been carried out on the anode glow related nonlinear floating potential fluctuations in a hollow cathode glow discharge plasma. CWT has been used to obtain the contour and ridge plots. Scale shift (or inversely frequency shift), which is a typical nonlinear behavior, has been detected from the undulating contours. From the ridge plots, we have identified the presence of nonlinearity and degree of chaoticity. Using the wavelet transform modulus maxima technique we have obtained the multifractal spectrum for the fluctuations at different discharge voltages and the spectrum was observed tomore » become a monofractal for periodic signals. These multifractal spectra were also used to estimate different quantities such as the correlation and fractal dimension, degree of multifractality, and complexity parameters. These estimations have been found to be consistent with the nonlinear time series analysis.« less

AmazonFACE: Assessing the Effects of Increasing Atmospheric CO2 on the Resilience of the Amazon Forest through Integrative Model-Experiment Research

NASA Astrophysics Data System (ADS)

Lapola, D. M.

2015-12-01

The existence, magnitude and duration of a supposed "CO2 fertilization" effect in tropical forests remains largely undetermined, despite being suggested for nearly 20 years as a key knowledge gap for understanding the future resilience of Amazonian forests and its impact on the global carbon cycle. Reducing this uncertainty is critical for assessing the future of the Amazon region as well as its vulnerability to climate change. The AmazonFACE (Free-Air CO2 Enrichment) research program is an integrated model-experiment initiative of unprecedented scope in an old-growth Amazon forest near Manaus, Brazil - the first of its kind in tropical forest. The experimental treatment will simulate an atmospheric CO2 concentration [CO2] of the future in order to address the question: "How will rising atmospheric CO2 affect the resilience of the Amazon forest, the biodiversity it harbors, and the ecosystem services it provides, in light of projected climatic changes?" AmazonFACE is divided into three phases: (I) pre-experimental ecological characterization of the research site; (II) pilot experiment comprised of two 30-m diameter plots, with one treatment plot maintained at elevated [CO2] (ambient +200 ppmv), and the other control plot at ambient [CO2]; and (III) a fully-replicated long-term experiment comprised of four pairs of control/treatment FACE plots maintained for 10 years. A team of scientists from Brazil, USA, Australia and Europe will employ state-of-the-art methods to study the forest inside these plots in terms of carbon metabolism and cycling, water use, nutrient cycling, forest community composition, and interactions with environmental stressors. All project phases also encompass ecosystem-modeling activities in a way such that models provide hypothesis to be verified in the experiment, which in turn will feed models to ultimately produce more accurate projections of the environment. Resulting datasets and analyses will be a valuable resource for a broad community, especially ecosystem and climate modelers, and policy-makers.

The AmazonFACE research program: assessing the effects of increasing atmospheric CO2 on the ecology and resilience of the Amazon forest

NASA Astrophysics Data System (ADS)

Lapola, David; Quesada, Carlos; Norby, Richard; Araújo, Alessandro; Domingues, Tomas; Hartley, Iain; Kruijt, Bart; Lewin, Keith; Meir, Patrick; Ometto, Jean; Rammig, Anja

2016-04-01

The existence, magnitude and duration of a supposed "CO2 fertilization" effect in tropical forests remains largely undetermined, despite being suggested for nearly 20 years as a key knowledge gap for understanding the future resilience of Amazonian forests and its impact on the global carbon cycle. Reducing this uncertainty is critical for assessing the future of the Amazon region as well as its vulnerability to climate change. The AmazonFACE (Free-Air CO2 Enrichment) research program is an integrated model-experiment initiative of unprecedented scope in an old-growth Amazon forest near Manaus, Brazil - the first of its kind in tropical forest. The experimental treatment will simulate an atmospheric CO2 concentration [CO2] of the future in order to address the question: "How will rising atmospheric CO2 affect the resilience of the Amazon forest, the biodiversity it harbors, and the ecosystem services it provides, in light of projected climatic changes?" AmazonFACE is divided into three phases: (I) pre-experimental ecological characterization of the research site; (II) pilot experiment comprised of two 30-m diameter plots, with one treatment plot maintained at elevated [CO2] (ambient +200 ppmv), and the other control plot at ambient [CO2]; and (III) a fully-replicated long-term experiment comprised of four pairs of control/treatment FACE plots maintained for 10 years. A team of scientists from Brazil, USA, Australia and Europe will employ state-of-the-art methods to study the forest inside these plots in terms of carbon metabolism and cycling, water use, nutrient cycling, forest community composition, and interactions with environmental stressors. All project phases also encompass ecosystem-modeling activities in a way such that models provide hypothesis to be verified in the experiment, which in turn will feed models to ultimately produce more accurate projections of the environment. Resulting datasets and analyses will be a valuable resource for a broad community, especially ecosystem and climate modelers, and policy-makers.

Agroforestry systems of the lowland alluvial valleys of the Tehuacán-Cuicatlán Biosphere Reserve: an evaluation of their biocultural capacity.

PubMed

Vallejo, Mariana; Casas, Alejandro; Pérez-Negrón, Edgar; Moreno-Calles, Ana I; Hernández-Ordoñez, Omar; Tellez, Oswaldo; Dávila, Patricia

2015-02-19

Agroforestry systems (AFS) are valuable production systems that allow concealing benefits provision with conservation of biodiversity and ecosystem services. We analysed AFS of the zone of alluvial valleys of the Tehuacán-Cuicatlán Valley (TCV), Mexico, the most intensive agricultural systems within a region recognized for harbouring one of the most ancient agricultural experience of the New World. We hypothesized that the biodiversity conservation capacity of AFS would be directly related to traditional agricultural features and inversely related to management intensity. Agricultural practices, use frequency of machinery and chemical inputs, and proportion of forest and cultivated areas were described in 15 AFS plots in alluvial valleys of the Salado River in three villages of the region. With the information, we constructed a management intensity index and compared among plots and villages. We documented the reasons why people maintain wild plant species and traditional practices. Perennial plant species were sampled in vegetation of AFS (15 plots) and unmanaged forests (12 plots 500 m(2)) in order to compare richness, diversity and other ecological indicators in AFS and forest. In all studied sites, people combine traditional and intensive agricultural practices. Main agroforestry practices are ground terraces and borders surrounding AFS plots where people maintain vegetation. According to people, the reasons for maintaining shrubs and trees in AFS were in order of importance are: Beauty and shade provision (14% of people), fruit provision (7%), protection against strong wind, and favouring water and soil retention. We recorded 66 species of trees and shrubs in the AFS studied, 81% of them being native species that represent 38% of the perennial plant species recorded in forests sampled. Land tenure and institutions vary among sites but not influenced the actions for maintaining the vegetation cover in AFS. Plant diversity decreased with increasing agricultural intensity. Maintenance of vegetation cover did not confront markedly with the intensive agricultural practices. It is possible the expansion and enrichment of vegetation in terraces and borders of AFS. Information available on plant species and local techniques is potentially useful for a regional program of biodiversity conservation considering AFS as keystones.

Biomass Development in SRI Field Under Unmaintained Alternate Wetting-Drying Irrigation

NASA Astrophysics Data System (ADS)

Ardiansyah; Chusnul, A.; Krissandi, W.; Asna, M.

2018-05-01

The aim of this research is to observe biomass development of SRI on farmers practice in three plots with different level. This research observes the farmer practice of SRI and Non-SRI during the uncertainty of irrigation water supply and its effects on paddy biomass development during growth stages and final stage of crop. A farmer group that already understand the principle of SRI, applied this method into several plots of their rented paddy field. Researcher interventions were eliminated from their action, so it is purely on farmers decision on managing their SRI plots. Three plots from both SRI and Non-SRI were chosen based on the position of the plot related their access to water. First plots had direct access to water from tertiary irrigation channel (on farm). Second plots were received water from previous upper plots and drainage water into other plots. Third plots were in the bottom position, where they received water from upper plot, and drainage water into farm drainage channel. Result shows there are similar patterns of root, straw, and leaves of biomass during crop growth. On the other hand, during generative phase, grain development shows different pattern and resulting different biomass in harvest time. Second plot, (of SRI) that has water from first plot has the average of biomass grain per plant of 54.4, higher than first plot and third plot, which are 33.8 g and 38.4. Average biomass in second plot is 74.6 g, higher than first and third plot, which are 49.9 g and 52.3 g.

New software for statistical analysis of Cambridge Structural Database data

PubMed Central

Sykes, Richard A.; McCabe, Patrick; Allen, Frank H.; Battle, Gary M.; Bruno, Ian J.; Wood, Peter A.

2011-01-01

A collection of new software tools is presented for the analysis of geometrical, chemical and crystallographic data from the Cambridge Structural Database (CSD). This software supersedes the program Vista. The new functionality is integrated into the program Mercury in order to provide statistical, charting and plotting options alongside three-dimensional structural visualization and analysis. The integration also permits immediate access to other information about specific CSD entries through the Mercury framework, a common requirement in CSD data analyses. In addition, the new software includes a range of more advanced features focused towards structural analysis such as principal components analysis, cone-angle correction in hydrogen-bond analyses and the ability to deal with topological symmetry that may be exhibited in molecular search fragments. PMID:22477784

Spatial distribution of soil moisture and hydrophobicity in the immediate period after a grassland fire in Lithuania

NASA Astrophysics Data System (ADS)

Pereira, P.; Pundyte, N.; Vaitkute, D.; Cepanko, V.; Pranskevicius, M.; Ubeda, X.; Mataix-Solera, J.; Cerda, A.

2012-04-01

Fire can affect significantly soil moisture (SM) and water repellency (WR) in the immediate period after the fire due the effect of the temperatures into soil profile and ash. This impact can be very heterogeneous, even in small distances, due to different conditions of combustion (e.g. fuel and soil moisture, fuel amount and type, distribution and connection, and geomorphological variables as aspect and slope) that influences fire temperature and severity. The aim of this work it is study the spatial distribution of SM and WR in a small plot (400 m2 with a sampling distance of 5 m) immediately after the a low severity grassland fire.. This was made in a burned but also in a control (unburned) plot as reference to can compare. In each plot we analyzed a total of 25 samples. SM was measured gravimetrically and WR with the water drop penetration time test (WDPT). Several interpolation methods were tested in order to identify the best predictor of SM and WR, as the Inverse Distance to a Weight (IDW) (with the power of 1,2,3,4 and 5), Local Polynomial with the first and second polynomial order, Polynomial Regression (PR), Radial Basis Functions (RBF) as Multilog (MTG), Natural Cubic Spline (NCS), Multiquadratic (MTQ), Inverse Multiquadratic (IMTQ) and Thin Plate Spline (TPS) and Ordinary Kriging. Interpolation accuracy was observed with the cross-validation method that is achieved by taking each observation in turn out of the sample and estimating from the remaining ones. The errors produced in each interpolation allowed us to calculate the Root Mean Square Error (RMSE). The best method is the one that showed the lower RMSE. The results showed that on average the SM in the control plot was 13.59 % (±2.83) and WR 2.9 (±1.3) seconds (s). The majority of the soils (88%) were hydrophilic (WDPT <5s). SM in the control plot showed a weak negative relationship with WR (r=-0.33, p<0.10). The coefficient of variation (CV%) of SM was 20.77% and SW of 44.62%. In the burned plot, SM was 14.17% (±2.83) and WR of 151 (±99) seconds (s). All the samples analysed were considered hydrophobic (WDPT >5s). We did not identify significant relationships among the variables (r=0.06, p>0.05) and the CV% was higher in WR (65.85%) than SM (19.96%). Overall we identified no significant changes in SM between plots, which means that fire did not had important implications on soil water content, contrary to observed in WR. The same dynamic was observed in the CV%. Among all tested methods the most accurate to interpolate SM, in the control plot IDW 1 and in the burned plot IDW 2, and this means that fire did not induce important inferences on the spatial distribution of SM. In WR, in the control plot, the best predictor was NCS and in the burned plot was IDW 1 and this means that spatial distribution WR was substantially affected by fire. In this case we observed an increase of the small scale variability in the burned area. Currently we are monitoring this burned area and observing the evaluation of the spatial variability of these two soil properties. It is important to observe their dynamic in the space and time and observe if fire will have medium and long term implications on SM and WR. Discussions about the results will be carried out during the poster session.

The Use of Natural Pozzolan in Concrete as an Additive or Substitute for Cement

DTIC Science & Technology

2011-12-01

identified opal and chert as the common forms of reactive silica. ERDC/CERL TR-11-46 4 For cracking and expansion to result from the ASR, the following combi...chemical composition of three natural pozzolanic samples was deter- mined through XRD analysis. In addition to these analyses, several addi- tional tests...reflected angle, which results in an inaccurate plot. The correct angle is required to deter- mine the correct composition. A very finely ground sample

Computer Program for Assessing the Economic Feasibility of Solar Energy for Single Family Residences and Light Commercial Applications

NASA Technical Reports Server (NTRS)

Forney, J. A.; Walker, D.; Lanier, M.

1979-01-01

Computer program, SHCOST, was used to perform economic analyses of operational test sites. The program allows consideration of the economic parameters which are important to the solar system user. A life cycle cost and cash flow comparison is made between a solar heating system and a conventional system. The program assists in sizing the solar heating system. A sensitivity study and plot capability allow the user to select the most cost effective system configuration.

Projection of the Liquidus Surface of the Co - Sn - Bi System

NASA Astrophysics Data System (ADS)

Abilov, Ch. I.; Allazov, M. R.; Sadygova, S. G.

2016-11-01

The crystallization behavior of phases in alloys of the Co - Sn - Bi system is studied by the methods of differential thermal (DTA), x-ray phase (XRP) and x-ray diffraction (XRD) analyses and hardness measurement. The projection of the liquidus surface is plotted. The boundaries of layering, the development of the monovariant processes, and the coordinates of the nonvariant equilibrium compositions are determined. Compositions of (Co3Sn2)1 - x Bi x solid solutions suitable for the production of antifriction materials are suggested.

Application of Mixed H2/H Infinity Optimization

DTIC Science & Technology

1991-11-01

Standard Form .................. . 29 4.4 a-Plot of the Open Loop System .. ......... .. 31 4.5 o-Plot of the H2 & H. Optimal Td ........... . 32 4.6 o...o.34 4.9 o-Plot of Mixed SolutiCo,,, Te.. .......... 35 4.10 a-Plot of H. Central Solution Td ........ 36 4.11 a-Plot of the Mixed Controllers...norm = 3.7) .. .. ......... 41 4.18 a3-Plot of Ted (V-norm 2.8) .......... o.42 v 4.19 a-Plot of Td (ac-norm = 2.5) . . . . . .. 0 42 4.20 a-Plot

Venusian ion populations and bow shock as seen by the ASPERA-4 ion instrument on Venus Express

NASA Astrophysics Data System (ADS)

Grande, M.; Whittaker, I.; Guymer, G.; Barabash, S.

2008-09-01

Introduction We examine ion populations at Venus. Previous models use magnetic crossing points to derive the bow shock position. The current work uses data from the ASPERA-4 (Analyser of Space Plasmas and Energetic Atoms) [1] instrument to measure ion populations and derive a bow shock position at Venus. Instrumentation The ASPERA-4 instrument flies onboard Venus Express (VEX) and is comprised of five different detectors (Barabash et al 2006 [1]). A neutral particle detector and analyser, an electron spectrometer and the Ion Mass Analyser (IMA) (ref). This paper uses the IMA instrument for all its data and an explanation of the specifications is required. The instrument is a top hat electrostatic analyser; it runs through voltages to scan look angles and also acceptance energies. In one look direction it scans through 96 different energy values before changing to the next. A full scan of all look directions and energies takes 192 seconds. Data Collection All data is weighed dependant upon its probability of the spacecraft measuring at a particular point and when fitted produces a value of 1.24 RV, somewhat closer distance for the sub solar point than previous authors - see figure 1. We separate the data according to slow or fast solar wind and not the similarities and differences in the results derived. The inbound and outbound bow shock crossings were taken by inspection of 106 orbits between November 2006 and February 2007. Any orbits where the crossing point was not clear or with data missing were ignored. The occupational probability is found from orbital mechanics. By setting up a grid and deriving the amount of time it takes to cross each square the probability as a whole can then be determined. Ion distribution plots Two dimensional maps of the ions are produced and the bow shock model overplotted to verify its accuracy, as shown in figure 3. The test of the bow shock is to place it upon real data and examine the fit. To do this ion distribution plots are created and have the bow shock model placed upon them. The maps are shown in fig 8 and comprise 6 months of data from VEX in 2007. The count rates of all spectra of every orbit were stored and binned into a grid system. Each box in the grid being averaged from all values placed into it. The results were then smoothed and the maps created for individual species and plot types. Fig 3 shows maps for hydrogen ions in the x-y plane and in cylindrical coordinates signed with y. This plot is the same as a standard cylindrical plot but the r value is positive if y is positive and negative if y is negative. Effect of Coronal mass Ejections The HI imager on STEREO is able to image Coronal mass Ejections (CME) in the inner Solar System. In a recent paper, Roullard et al 2008 [2] have considered a CME observed to impact Venus, and used in situ measurements to examine the response of the magnetosphere. The plots in figure4 show the measured ion response to this and an earlier CME. We will examine the ion signatures in detail. Acknowledgements We acknowledge the contributions of the entire Aspera 4 team: S. Barabash, R. Lundin, H. Andersson, K. Brinkfeld, A. Grigoriev, H. Gunell, M. Holmström, M. Yamauchi, K. Asamura, P. Bochsler, P. Wurz, R. Cerulli-Irelli, A. Mura, A. Milillo, M. Maggi, S. Orsini, A. J. Coates, D. R. Linder, D. O. Kataria, C. C. Curtis, K. C. Hsieh, B. R. Sandel, R. A. Frahm, J. R. Sharber, J. D. Winningham, M. Grande, E. Kallio, H. Koskinen, P. Riihelä, W. Schmidt, T. Säles, J. U. Kozyra,N. Krupp, J. Woch,.S. Livi, J. G., Luhmann, S. McKenna-Lawlor, E. C. Roelof, D. J. Williams, J.-A. Sauvaud, A. Fedorov, and J.-J. Thocaven. References [1] S. Barabash, R. Lundin, H. Andersson, K. Brinkfeld, A. Grigoriev, H. Gunell, M. Holmström, M. Yamauchi, K. Asamura, P. Bochsler, P. Wurz, R. Cerulli-Irelli, A. Mura, A. Milillo, M. Maggi, S. Orsini, A. J. Coates, D. R. Linder, D. O. Kataria, C. C. Curtis, K. C. Hsieh, B. R. Sandel, R. A. Frahm, J. R. Sharber, J. D. Winningham, M. Grande, E. Kallio, H. Koskinen, P. Riihelä, W. Schmidt, T. Säles, J. U. Kozyra,N. Krupp, J. Woch,.S. Livi, J. G., Luhmann, S. McKenna-Lawlor, E. C. Roelof, D. J. Williams, J.-A. Sauvaud, A. Fedorov, and J.-J. Thocaven The Analyser of Space Plasmas and Energetic Atoms (ASPERA-3) for the Mars Express Mission. SPACE SCIENCE REVIEWS, 126 (1-4): 113-164 OCT 2006 [2] P. Rouillard et al 2008 submitted Science.

Mapping within-field variations of soil organic carbon content using UAV multispectral visible near-infrared images

NASA Astrophysics Data System (ADS)

Gilliot, Jean-Marc; Vaudour, Emmanuelle; Michelin, Joël

2016-04-01

This study was carried out in the framework of the PROSTOCK-Gessol3 project supported by the French Environment and Energy Management Agency (ADEME), the TOSCA-PLEIADES-CO project of the French Space Agency (CNES) and the SOERE PRO network working on environmental impacts of Organic Waste Products recycling on field crops at long time scale. The organic matter is an important soil fertility parameter and previous studies have shown the potential of spectral information measured in the laboratory or directly in the field using field spectro-radiometer or satellite imagery to predict the soil organic carbon (SOC) content. This work proposes a method for a spatial prediction of bare cultivated topsoil SOC content, from Unmanned Aerial Vehicle (UAV) multispectral imagery. An agricultural plot of 13 ha, located in the western region of Paris France, was analysed in April 2013, shortly before sowing while it was still bare soil. Soils comprised haplic luvisols, rendzic cambisols and calcaric or colluvic cambisols. The UAV platform used was a fixed wing provided by Airinov® flying at an altitude of 150m and was equipped with a four channels multispectral visible near-infrared camera MultiSPEC 4C® (550nm, 660nm, 735 nm and 790 nm). Twenty three ground control points (GCP) were sampled within the plot according to soils descriptions. GCP positions were determined with a centimetric DGPS. Different observations and measurements were made synchronously with the drone flight: soil surface description, spectral measurements (with ASD FieldSpec 3® spectroradiometer), roughness measurements by a photogrammetric method. Each of these locations was sampled for both soil standard physico-chemical analysis and soil water content. A Structure From Motion (SFM) processing was done from the UAV imagery to produce a 15 cm resolution multispectral mosaic using the Agisoft Photoscan® software. The SOC content was modelled by partial least squares regression (PLSR) between the laboratory analyses and the multispectral information for the 23 plots. The mean squared error of cross validation (RMSECV) by LOO (Leave One Out) method was 1.97 g of OC per kg of soil. A second correction of the model incorporating the effects of moisture and roughness on reflectance, has improved the quality of the prediction by 18% and a RMSECV of 1.61 g / kg. The model was finally spatialized on the whole plot using ArcGIS® by applying the regression formula on all mosaic pixels. Results are discussed in the light of an additional sampling campaign carried out in October 2015, providing 34 independent samples.

Optimal design of a plot cluster for monitoring

Treesearch

Charles T. Scott

1993-01-01

Traveling costs incurred during extensive forest surveys make cluster sampling cost-effective. Clusters are specified by the type of plots, plot size, number of plots, and the distance between plots within the cluster. A method to determine the optimal cluster design when different plot types are used for different forest resource attributes is described. The method...

Long-term tree inventory data from mountain forest plots in France.

PubMed

Fuhr, Marc; Cordonnier, Thomas; Courbaud, Benoît; Kunstler, Georges; Mermin, Eric; Riond, Catherine; Tardif, Pascal

2017-04-01

We present repeated tree measurement data from 63 permanent plots in mountain forests in France. Plot elevations range from 800 (lower limit of the montane belt) to 1942 m above sea level (subalpine belt). Forests mainly consist of pure or mixed stands dominated by European beech (Fagus sylvatica), Silver fir (Abies alba), and Norway spruce (Picea abies), in association with various broadleaved species at low elevation and with Arolla pine (Pinus cembra) at high elevation. The plot network includes 23 plots in stands that have not been managed for the last 40 years (at least) and 40 plots in plots managed according to an uneven-aged system with single-tree or small-group selection cutting. Plot sizes range from 0.2 to 1.9 ha. Plots were installed from 1994 to 2004 and remeasured two to five times during the 1994-2015 period. During the first census (installation), living trees more than 7.5 cm in dbh were identified, their diameter at breast height (dbh) was measured and their social status (strata) noted. Trees were spatially located, either with x, y, and z coordinates (40 plots) or within 0.25-ha square subplots (23 plots). In addition, in a subset of plots (58 plots), tree heights and tree crown dimensions were measured on a subset of trees and dead standing trees and stumps were included in the census. Remeasurements after installation include live tree diameters (including recruited trees), tree status (living, damaged, dead, stump), and for a subset of trees, height. At the time of establishment of the plots, plot densities range from 181 to 1328 stems/ha and plot basal areas range from 13.6 to 81.3 m 2 /ha. © 2017 by the Ecological Society of America.

Reindeer grazing in subarctic boreal forest - influences on the soil carbon dynamics

NASA Astrophysics Data System (ADS)

Koster, Kajar; Berninger, Frank; Köster, Egle; Pumpanen, Jukka

2015-04-01

Reindeer (Rangifer tarandus L.) are the most important large mammalian herbivores in the northern ecosystems , which have many effects on plant diversity, soil nutrient cycling and soil organic matter decomposition. Changes caused by reindeer in vegetation have indirect effects on physical features of the soil e.g. soil microclimate, root biomass and also on soil C dynamics. Earlier, the role of reindeer grazing in ground vegetation dynamics and in soil carbon (C) dynamics has been mostly investigated in open tundra heaths. The objectives of this study were to examine if and how the reindeer grazing (and the possible temperature changes in soil caused by heavy grazing) is affecting the soil C dynamics (CO2 efflux from the soil, C storage in soil, microbial biomass in the soil). In a field experiment in Finnish Lapland, in Värriö Strict Nature Reserve (67° 46' N, 29° 35' E) we have assessed the changes occurring in above- and belowground biomasses, and soil C dynamics (CO2 efflux, soil C content, soil microbial biomass C) among areas grazed and ungrazed by reindeer. Our study areas are located in the northern boreal subarctic coniferous forest at the zone of the last intact forest landscapes in Fennoscandia, where large areas of relatively undisturbed subarctic Scots pine (Pinus sylvestris L.) forests can still be found. The sample plots located in the Värriö Strict Nature Reserve (10 sample plots in total established in year 2013) are situated along the borderline between Finland and Russia, where the ungrazed area was excluded from the reindeer grazing already in 1918, to prevent the Finnish reindeer from going to the Russian side and there are not many reindeer on Russian side of the area. To characterize the stands we have established circular sample plots on areas with a radius of 11.28 m, where different tree characteristics were measured (diameter at 1.3 m, height, height of a tree, crown height, crown diameter, stand age, etc.). On every sample plot, four 0.5 x 0.5 m ground vegetation squares were established for species composition and recovery measurements. The squares were photographed for ground vegetation coverage analyses and definition of species composition. Ground vegetation biomass was determined from 4 sample squares (0.2 x 0.2 m) located systematically inside the circular sample plots (close to the ground vegetation squares). For soil C content measurements 5 soil cores (150 mm in length and 50 mm in diameter) were taken from every sample plot in Värriö and in Sodankylä. The soil cores were divided according to the morphological soil horizons; to litter and organic layer (F-horizon) and humus layer (O-horizon). The layers in mineral soil were divided to eluvial (A-horizon) and illuvial (B-horizon), and sieved. All roots were separated for root biomass calculations. The soil C content was measured with an elemental analyser (varioMAX CN elemental analyser, Elementar Analysensysteme GmbH, Germany). The soil respiration rates were measured only in Värriö study areas. In order to determine the CO2 efflux from soil to atmosphere, manual chamber measurements with a diffusion type CO2 probe (GMP343), were performed on 6 collars at each sample plot from June till September (five times per collar) at measuring intervals of two weeks. Soil microbial biomass was measured from five soil samples (soil from lower humus layer) per sample plot in Värriö. To determine the soil microbial C biomass (Cmic) and soil microbial N biomass (Nmic) chloroform fumigation direct extraction method was used. The average soil temperatures during the growing season (from June till September) were similar in all sample plots in Värriö, ranging from 10.9 to 11.5 ° C. There were also no differences between daily average temperatures or soil moisture between grazed and ungrazed areas. There was no statistically significant effect of reindeer grazing on soil C content, although it was mainly higher in grazed area compared to the ungrazed area. Also there was no significant differences in the soil CO2 efflux between the grazed and ungrazed area. This means that although the soil CO2 efflux was mostly lower in the ungrazed area, reindeer herding had no significant influence on the soil CO2 efflux. The CO2 effluxes were lowest in June. In July and August, the CO2 effluxes were more than two times higher compared to June. The microbial biomass C (Cmic) measured from humus horizon was lower in the grazed areas compared to the ungrazed areas, but the difference was not statistically significant. However, the microbial biomass N (Nmic) was significantly lower (p > 0.05) in the grazed areas compared to the ungrazed areas. We found also that grazing decreased significantly the biomass and cover of lichens in the coniferous forests. In Sodankylä the biomass of lichens was decreased around 74% due to grazing. In Värriö the decrease was even bigger, there the amount of lichen biomass was decreased more than 90% due to reindeer grazing. Ttal above ground biomass was higher in the area where no reindeer grazing had occurred. Moreover, the tree biomass was higher in the area with no grazing and tree regeneration was heavily affected by grazing, as we had much less tree regeneration in the grazed areas compared to the ungrazed areas.

[Heart rate variability study based on a novel RdR RR Intervals Scatter Plot].

PubMed

Lu, Hongwei; Lu, Xiuyun; Wang, Chunfang; Hua, Youyuan; Tian, Jiajia; Liu, Shihai

2014-08-01

On the basis of Poincare scatter plot and first order difference scatter plot, a novel heart rate variability (HRV) analysis method based on scatter plots of RR intervals and first order difference of RR intervals (namely, RdR) was proposed. The abscissa of the RdR scatter plot, the x-axis, is RR intervals and the ordinate, y-axis, is the difference between successive RR intervals. The RdR scatter plot includes the information of RR intervals and the difference between successive RR intervals, which captures more HRV information. By RdR scatter plot analysis of some records of MIT-BIH arrhythmias database, we found that the scatter plot of uncoupled premature ventricular contraction (PVC), coupled ventricular bigeminy and ventricular trigeminy PVC had specific graphic characteristics. The RdR scatter plot method has higher detecting performance than the Poincare scatter plot method, and simpler and more intuitive than the first order difference method.

User Guide for the Plotting Software for the Los Alamos National Laboratory Nuclear Weapons Analysis Tools Version 2.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cleland, Timothy James

The Los Alamos National Laboratory Plotting Software for the Nuclear Weapons Analysis Tools is a Java™ application based upon the open source library JFreeChart. The software provides a capability for plotting data on graphs with a rich variety of display options while allowing the viewer interaction via graph manipulation and scaling to best view the data. The graph types include XY plots, Date XY plots, Bar plots and Histogram plots.

Effects of anabolic and catabolic nutrients on woody plant encroachment after long-term experimental fertilization in a South African savanna

PubMed Central

Milewski, Antoni V.; Snyman, Dirk; Jordaan, Jorrie J.

2017-01-01

The causes of the worldwide problem of encroachment of woody plants into grassy vegetation are elusive. The effects of soil nutrients on competition between herbaceous and woody plants in various landscapes are particularly poorly understood. A long-term experiment of 60 plots in a South African savanna, comprising annual applications of ammonium sulphate (146–1166 kg ha-1 yr-1) and superphosphate (233–466 kg ha-1 yr-1) over three decades, and subsequent passive protection over another three decades, during which indigenous trees encroached on different plots to extremely variable degrees, provided an opportunity to investigate relationships between soil properties and woody encroachment. All topsoils were analysed for pH, acidity, EC, water-dispersible clay, Na, Mg, K, Ca, P, S, C, N, NH4, NO3, B, Mn, Cu and Zn. Applications of ammonium sulphate (AS), but not superphosphate (SP), greatly constrained tree abundance relative to control plots. Differences between control plots and plots that had received maximal AS application were particularly marked (16.3 ± 5.7 versus 1.2 ± 0.8 trees per plot). Soil properties most affected by AS applications included pH (H2O) (control to maximal AS application: 6.4 ± 0.1 to 5.1 ± 0.2), pH (KCl) (5.5 ± 0.2 to 4.0 ± 0.1), acidity (0.7 ± 0.1 to 2.6 ± 0.3 cmol kg-1), acid saturation (8 ± 2 to 40 ± 5%), Mg (386 ± 25 to 143 ± 15 mg kg-1), Ca (1022 ± 180 to 322 ± 14 mg kg-1), Mn (314 ± 11 to 118 ± 9 mg kg-1), Cu (3.6 ± 0.3 to 2.3 ± 0.2 mg kg-1) and Zn (6.6 ± 0.4 to 3.7 ± 0.4 mg kg-1). Magnesium, B, Mn and Cu were identified using principal component analysis, boundary line analysis and Kruskal-Wallis rank sum tests as the nutrients most likely to be affecting tree abundance. The ratio Mn/Cu was most related to tree abundance across the experiment, supporting the hypothesis that competition between herbaceous and woody plants depends on the availability of anabolic relative to catabolic nutrients. These findings, based on more than six decades of experimentation, may have global significance for the theoretical understanding of changes in vegetation structure and thus the practical control of invasive woody plants. PMID:28662068

Comparison of combinations of sighting devices and target objects for establishing circular plots in the field

Treesearch

Sylvio Mannel; Mark A. Rumble; Maribeth Price; Thomas M. Juntti; Dong Hua

2006-01-01

Many aspects of ecological research require measurement of characteristics within plots. Often, the time spent establishing plots is small relative to the time spent collecting and recording data. However, some studies require larger numbers of plots, where the time spent establishing the plot is consequential to the field effort. In open habitats, circular plots are...

Application of mapped plots for single-owner forest surveys

Treesearch

Paul C. Van Deusen; Francis Roesch

2009-01-01

Mapped plots are used for the nation forest inventory conducted by the U.S. Forest Service. Mapped plots are also useful foro single ownership inventoires. Mapped plots can handle boundary overlap and can aprovide less variable estimates for specified forest conditions. Mapping is a good fit for fixed plot inventories where the fixed area plot is used for both mapping...

PET kinetic analysis --pitfalls and a solution for the Logan plot.

PubMed

Kimura, Yuichi; Naganawa, Mika; Shidahara, Miho; Ikoma, Yoko; Watabe, Hiroshi

2007-01-01

The Logan plot is a widely used algorithm for the quantitative analysis of neuroreceptors using PET because it is easy to use and simple to implement. The Logan plot is also suitable for receptor imaging because its algorithm is fast. However, use of the Logan plot, and interpretation of the formed receptor images should be regarded with caution, because noise in PET data causes bias in the Logan plot estimates. In this paper, we describe the basic concept of the Logan plot in detail and introduce three algorithms for the Logan plot. By comparing these algorithms, we demonstrate the pitfalls of the Logan plot and discuss the solution.

WCPP-THE WOLF PLOTTING AND CONTOURING PACKAGE

NASA Technical Reports Server (NTRS)

Masaki, G. T.

1994-01-01

The WOLF Contouring and Plotting Package provides the user with a complete general purpose plotting and contouring capability. This package is a complete system for producing line printer, SC4020, Gerber, Calcomp, and SD4060 plots. The package has been designed to be highly flexible and easy to use. Any plot from a quick simple plot (which requires only one call to the package) to highly sophisticated plots (including motion picture plots) can be easily generated with only a basic knowledge of FORTRAN and the plot commands. Anyone designing a software system that requires plotted output will find that this package offers many advantages over the standard hardware support packages available. The WCPP package is divided into a plot segment and a contour segment. The plot segment can produce output for any combination of line printer, SC4020, Gerber, Calcomp, and SD4060 plots. The line printer plots allow the user to have plots available immediately after a job is run at a low cost. Although the resolution of line printer plots is low, the quick results allows the user to judge if a high resolution plot of a particular run is desirable. The SC4020 and SD4060 provide high speed high resolution cathode ray plots with film and hard copy output available. The Gerber and Calcomp plotters provide very high quality (of publishable quality) plots of good resolution. Being bed or drum type plotters, the Gerber and Calcomp plotters are usually slow and not suited for large volume plotting. All output for any or all of the plotters can be produced simultaneously. The types of plots supported are: linear, semi-log, log-log, polar, tabular data using the FORTRAN WRITE statement, 3-D perspective linear, and affine transformations. The labeling facility provides for horizontal labels, vertical labels, diagonal labels, vector characters of a requested size (special character fonts are easily implemented), and rotated letters. The gridding routines label the grid lines according to user specification. Special line features include multiple lines, dashed lines, and tic marks. The contour segment of this package is a collection of subroutines which can be used to produce contour plots and perform related functions. The package can contour any data which can be placed on a grid or data which is regularly spaced, including any general affine or polar grid data. The package includes routines which will grid random data. Contour levels can be specified at any values desired. Input data can be smoothed with undefined points being acceptable where data is unreliable or unknown. Plots which are extremely large or detailed can be automatically output in parts to improve resolution or overcome plotter size limitations. The contouring segment uses the plot segment for actual plotting, thus all the features described for the plotting segment are available to the user of the contouring segment. Included with this package are two data bases for producing world map plots in Mercator projection. One data base provides just continent outlines and another provides continent outlines and national borders in great detail. This package is written in FORTRAN IV and IBM OS ASSEMBLER and has been implemented on an IBM 360 with a central memory requirement of approximately 140K of 8 bit bytes. The ASSEMBLER routines are basic plotter interface routines. The WCPP package was developed in 1972.

Ecological effects of pipeline construction through deciduous forested wetlands, Midland County, Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zellmer, S.D.; Rastorfer, J.R.; Van Dyke, G.D.

Implementation of recent federal and state regulations promulgated to protect wetlands makes information on effects of gas pipeline rights-of-way (ROWs) in wetlands essential to the gas pipeline industry. This study is designed to record vegetational changes induced by the construction of a large-diameter gas pipeline through deciduous forested wetlands. Two second-growth forested wetland sites mapped as Lenawee soils, one mature and one subjected to recent selective logging, were selected in Midland County, Michigan. Changes in the adjacent forest and successional development on the ROW are being documented. Cover-class estimates are being made for understory and ROW plant species using 1more » {times}1-m quadrats. Counts are also being made for all woody species with stems < 2 cm in diameter at breast height (dbh) in the same plots used for cover-class estimates. Individual stem diameters and species counts are being recorded for all woody understory and overstory plants with stems {ge}2 cm dbh in 10 {times} 10-m plots. Although analyses of the data have not been completed, preliminary analyses indicate that some destruction of vegetation at the ROW forest edge may have been avoidable during pipeline construction. Rapid regrowth of many native wetland plant species on the ROW occurred because remnants of native vegetation and soil-bearing propagules of existing species survived on the ROW after pipeline construction and seeding operations. 91 refs., 11 figs., 3 tabs.« less

Implementing self sustained quality control procedures in a clinical laboratory.

PubMed

Khatri, Roshan; K C, Sanjay; Shrestha, Prabodh; Sinha, J N

2013-01-01

Quality control is an essential component in every clinical laboratory which maintains the excellence of laboratory standards, supplementing to proper disease diagnosis, patient care and resulting in overall strengthening of health care system. Numerous quality control schemes are available, with combinations of procedures, most of which are tedious, time consuming and can be "too technical" whereas commercially available quality control materials can be expensive especially for laboratories in developing nations like Nepal. Here, we present a procedure performed at our centre with self prepared control serum and use of simple statistical tools for quality assurance. The pooled serum was prepared as per guidelines for preparation of stabilized liquid quality control serum from human sera. Internal Quality Assessment was performed on this sample, on a daily basis which included measurement of 12 routine biochemical parameters. The results were plotted on Levey-Jennings charts and analysed with quality control rules, for a period of one month. The mean levels of biochemical analytes in self prepared control serum were within normal physiological range. This serum was evaluated every day along with patients' samples. The results obtained were plotted on control charts and analysed using common quality control rules to identify possible systematic and random errors. Immediate mitigation measures were taken and the dispatch of erroneous reports was avoided. In this study we try to highlight on a simple internal quality control procedure which can be performed by laboratories, with minimum technology, expenditure, and expertise and improve reliability and validity of the test reports.

The Influence of Sound Cues on the Maintenance of Temporal Organization in the Sprague-Dawley Rat

NASA Technical Reports Server (NTRS)

Winget, C. M.; Moeller, K. A.; Holley, D. C.; Souza, Kenneth A. (Technical Monitor)

1994-01-01

Temporal organization is a fundamental property of living matter. From single cells to complex animals including man, most physiological systems undergo daily periodic changes in concert with environmental cues (e.g., light, temperature etc.). It is known that pulsed Environmental synchronizers, zeitgebers, (e.g. light) can modify rhythm parameters. Rhythm stability is a necessary requirement for most animal experiments. The extent to which sound can influence the circadian system of laboratory rats is poorly understood. This has implications to animal habitats in the novel environments of the Space-Laboratory or Space Station. A series of three white noise (88+/-0.82 db) zeitgeber experiments were conducted (n=6/experiment).The sound cue was introduced in the circadian free-running phase (DD-NQ) and in one additional case sound was added to the usual photoperiod (12L:12D) to determine masking effects. Circadian rhythm parameters of drinking frequency, feeding frequency, and gross locomotor activity were continuously monitored. Data analysis for these studies included macroscopic and microscopic methods. Raster plots to visually detect entrainment versus free-running period, were plotted for each animal, for all three parameters, during all sound perturbation tested. These data were processed through a series of detrending (robust locally weighted regression analyses) and complex demodulation analyses. In summary, these findings show that periodic "white" noise "influences" the rats circadian system but does not "entrain" the feeding, drinking or locomotor activity rhythms.

Regular Topographic Patterning of Karst Depressions Suggests Landscape Self-Organization

NASA Astrophysics Data System (ADS)

Quintero, C.; Cohen, M. J.

2017-12-01

Thousands of wetland depressions that are commonly host to cypress domes dot the sub-tropical limestone landscape of South Florida. The origin of these depression features has been the topic of debate. Here we build upon the work of previous surveyors of this landscape to analyze the morphology and spatial distribution of depressions on the Big Cypress landscape. We took advantage of the emergence and availability of high resolution Light Direction and Ranging (LiDAR) technology and ArcMap GIS software to analyze the structure and regularity of landscape features with methods unavailable to past surveyors. Six 2.25 km2 LiDAR plots within the preserve were selected for remote analysis and one depression feature within each plot was selected for more intensive sediment and water depth surveying. Depression features on the Big Cypress landscape were found to show strong evidence of regular spatial patterning. Periodicity, a feature of regularly patterned landscapes, is apparent in both Variograms and Radial Spectrum Analyses. Size class distributions of the identified features indicate constrained feature sizes while Average Nearest Neighbor analyses support the inference of dispersed features with non-random spacing. The presence of regular patterning on this landscape strongly implies biotic reinforcement of spatial structure by way of the scale dependent feedback. In characterizing the structure of this wetland landscape we add to the growing body of work dedicated to documenting how water, life and geology may interact to shape the natural landscapes we see today.

Do freshwater fishes diversify faster than marine fishes? A test using state-dependent diversification analyses and molecular phylogenetics of new world silversides (atherinopsidae).

PubMed

Bloom, Devin D; Weir, Jason T; Piller, Kyle R; Lovejoy, Nathan R

2013-07-01

Freshwater habitats make up only ∼0.01% of available aquatic habitat and yet harbor 40% of all fish species, whereas marine habitats comprise >99% of available aquatic habitat and have only 60% of fish species. One possible explanation for this pattern is that diversification rates are higher in freshwater habitats than in marine habitats. We investigated diversification in marine and freshwater lineages in the New World silverside fish clade Menidiinae (Teleostei, Atherinopsidae). Using a time-calibrated phylogeny and a state-dependent speciation-extinction framework, we determined the frequency and timing of habitat transitions in Menidiinae and tested for differences in diversification parameters between marine and freshwater lineages. We found that Menidiinae is an ancestrally marine lineage that independently colonized freshwater habitats four times followed by three reversals to the marine environment. Our state-dependent diversification analyses showed that freshwater lineages have higher speciation and extinction rates than marine lineages. Net diversification rates were higher (but not significant) in freshwater than marine environments. The marine lineage-through time (LTT) plot shows constant accumulation, suggesting that ecological limits to clade growth have not slowed diversification in marine lineages. Freshwater lineages exhibited an upturn near the recent in their LTT plot, which is consistent with our estimates of high background extinction rates. All sequence data are currently being archived on Genbank and phylogenetic trees archived on Treebase. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Normal versus High Tension Glaucoma: A Comparison of Functional and Structural Defects

PubMed Central

Thonginnetra, Oraorn; Greenstein, Vivienne C.; Chu, David; Liebmann, Jeffrey M.; Ritch, Robert; Hood, Donald C.

2009-01-01

Purpose To compare visual field defects obtained with both multifocal visual evoked potential (mfVEP) and Humphrey visual field (HVF) techniques to topographic optic disc measurements in patients with normal tension glaucoma (NTG) and high tension glaucoma (HTG). Methods We studied 32 patients with NTG and 32 with HTG. All patients had reliable 24-2 HVFs with a mean deviation (MD) of −10 dB or better, a glaucomatous optic disc and an abnormal HVF in at least one eye. Multifocal VEPs were obtained from each eye and probability plots created. The mfVEP and HVF probability plots were divided into a central 10-degree (radius) and an outer arcuate subfield in both superior and inferior hemifields. Cluster analyses and counts of abnormal points were performed in each subfield. Optic disc images were obtained with the Heidelberg Retina Tomograph III (HRT III). Eleven stereometric parameters were calculated. Moorfields regression analysis (MRA) and the glaucoma probability score (GPS) were performed. Results There were no significant differences in MD and PSD values between NTG and HTG eyes. However, NTG eyes had a higher percentage of abnormal test points and clusters of abnormal points in the central subfields on both mfVEP and HVF than HTG eyes. For HRT III, there were no significant differences in the 11 stereometric parameters or in the MRA and GPS analyses of the optic disc images. Conclusions The visual field data suggest more localized and central defects for NTG than HTG. PMID:19223786

Rough wave-like heaped overburden promotes establishment of woody vegetation while leveling promotes grasses during unassisted post mining site development.

PubMed

Frouz, Jan; Mudrák, Ondřej; Reitschmiedová, Erika; Walmsley, Alena; Vachová, Pavla; Šimáčková, Hana; Albrechtová, Jana; Moradi, Jabbar; Kučera, Jiří

2018-01-01

Geodiversity plays an important role in species establishment during spontaneous succession. At post-mining sites in the Czech Republic in 2003, we established plots in which the surface of the heaped overburden was either kept wave-like or leveled. Based on surveys conducted from 2006 to 2015, leveled plots were increasingly dominated by grasses and herbs (and especially by the grass Calamagrostis epigejos) while the wave-like plots were increasingly dominated by the trees Salix caprea and Betula pendula. In 2015, a detailed survey was conducted of the dominant species. Both S. caprea and B. pendula occurred more often in wave-like plots than in leveled plots; this was particularly true for trees taller than 1 m, which were absent in leveled plots. In wave-like plots, leaf and root biomasses of both woody species were higher on the wave slopes than on the wave depressions. Nitrogen content was higher but content stress indicating proline in leaves of S. caprea was lower in wave-like plots than in leveled plots. In wave-like plots, both woody species occurred mainly on wave slopes but C. epigejos occurred mainly in the depressions. We speculate that trees were more abundant in wave-like plots than in leveled plots because the waves trapped tree seeds and snow and because the soil porosity was greater in wave-like than in leveled plots. Grasses may have preferred the leveled plots because soil porosity was lower and clay content was higher in leveled than in wave-like plots. Copyright © 2017 Elsevier Ltd. All rights reserved.

Charmonium Decays at BESIII

NASA Astrophysics Data System (ADS)

Zhang, Jielei

The BESIII Experiment at the Beijing Electron Positron Collider (BEPCII) has accumulated the largest e+e‑ collisions data sets in the τ-charm region in the world. Using the data sets of 448.1 million ψ(3686) events and 1.3 billion J/ψ events, the branching fractions and the angular distributions of J/ψ and ψ(3686) decay to ΛΛ¯, Σ0Σ¯0, Σ(1385)0Σ¯(1385)0 and Ξ0Ξ¯0 are measured. The branching fractions of ψ(3686) → γχcJ are reported with improved precision. The higher-order multipole amplitudes in ψ(3686) → γχc1,2 with χc1,2 → γJ/ψ are measured, as a byproduct the ηc(2S) → γJ/ψ transition is searched. The Dalitz decays of ψ(3686) → e+e‑χ cJ and χcJ → e+e‑J/ψ are observed and the branching fractions are measured. hc radiative decays hc → γη‧(η) are observed for the first time. Improved measurement of ηc → ϕϕ and search for ηc → ωϕ are reported.

Resolution of coi-dominant phytoplankton species in a eutrophiclake using synchrotron-based Fourier transform infraredspectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dean, A.P.; Martin, Michael C.; Sigee, D.C.

2006-10-09

Synchrotron-based Fourier-transform infrared (FTIR)microspectroscopy was used to distinguish micropopulations of thecodominant algae Microcystis aeruginosa (Cyanophyceae) and Ceratiumhirundinella (Dinophyceae) in mixed phytoplankton samples taken from thewater column of a stratified eutrophic lake (Rostherne Mere, UK). FTIRspectra of the two algae showed a closely similar sequence of 10 bandsover the wave-number range 4000-900 cm-1. These were assigned to a rangeof vibrationally active chemical groups using published band assignmentsand on the basis of correlation and factor analysis. In both algae,intracellular concentrations of macromolecular components (determined asband intensity) varied considerably within the same population,indicating substantial intraspecific heterogeneity. Interspecificdifferences were separately analysed in relation tomore » discrete bands and bymultivariate analysis of the entire spectral region 1750-900 cm-1. Interms of discrete bands, comparison of individual intensities (normalisedto amide 1) demonstrated significant (99 percent probability level)differences in relation to six bands between the two algal species. Keyinterspecific differences were also noted in relation to the positions ofbands 2, 10 (carbohydrate) and 7 (protein) and in the 3-D plots derivedby principal component analysis (PCA) of the sequence of bandintensities. PCA of entire spectral regions showed clear resolutionofspecies in the PCA plot, with indication of separation on the basis ofprotein (region 1700-1500 cm1) and carbohydrate (region 1150-900 cm1)composition in the loading plot. Hierarchical cluster analysis (Wardalgorithm) of entire spectral regions also showed clear discrimination ofthe two species within the resulting dendrogram.« less

Recurrence plot for parameters analysing of internal combustion engine

NASA Astrophysics Data System (ADS)

Alexa, O.; Ilie, C. O.; Marinescu, M.; Vilau, R.; Grosu, D.

2015-11-01

In many technical disciplines modem data analysis techniques has been successfully applied to understand the complexity of the system. The growing volume of theoretical knowledge about systems dynamic's offered researchers the opportunity to look for non-linear dynamics in data whose evolution linear models are unable to explain in a satisfactory manner. One approach in this respect is Recurrence Analysis - RA which is a graphical method designed to locate hidden recurring patterns, nonstationarity and structural changes. RA approach arose in natural sciences like physics and biology but quickly was adopted in economics and engineering. Meanwhile. The fast development of computer resources has provided powerful tools to perform this new and complex model. One free software which was used to perform our analysis is Visual Recurrence Analysis - VRA developed by Eugene Kononov. As is presented in this paper, the recurrence plot investigation for the analyzing of the internal combustion engine shows some of the RPA capabilities in this domain. We chose two specific engine parameters measured in two different tests to perform the RPA. These parameters are injection impulse width and engine angular speed and the tests are I11n and I51n. There were computed graphs for each of them. Graphs were analyzed and compared to obtain a conclusion. This work is an incipient research, being one of the first attempts of using recurrence plot for analyzing automotive dynamics. It opens a wide field of action for future research programs.

Non-aflatoxigenic Aspergillus flavus as potential biocontrol agents to reduce aflatoxin contamination in peanuts harvested in Northern Argentina.

PubMed

Alaniz Zanon, María Silvina; Barros, Germán Gustavo; Chulze, Sofía Noemí

2016-08-16

Biological control is one of the most promising strategies for preventing aflatoxin contamination in peanuts at field stage. A population of 46 native Aspergillus flavus nonaflatoxin producers were analysed based on phenotypic, physiological and genetic characteristics. Thirty-three isolates were characterized as L strain morphotype, 3 isolates as S strain morphotype, and 10 isolates did not produce sclerotia. Only 11 of 46 non-aflatoxigenic isolates did not produce cyclopiazonic acid. The vegetative compatibility group (VCG) diversity index for the population was 0.37. For field trials we selected the non-aflatoxigenic A. flavus AR27, AR100G and AFCHG2 strains. The efficacy of single and mixed inocula as potential biocontrol agents in Northern Argentina was evaluated through a 2-year study (2014-2015). During the 2014 peanut growing season, most of the treatments reduced the incidence of aflatoxigenic strains in both soil and peanut kernel samples, and no aflatoxin was detected in kernels. During the 2015 growing season, there was a reduction of aflatoxigenic strains in kernel samples from the plots treated with the potential biocontrol agents. Reductions of aflatoxin contamination between 78.36% and 89.55% were observed in treated plots in comparison with the un-inoculated control plots. This study provides the first data on aflatoxin biocontrol based on competitive exclusion in the peanut growing region of Northern Argentina, and proposes bioproducts with potential use as biocontrol agents. Copyright © 2016. Published by Elsevier B.V.

Fancy plots for SIG

DOE Office of Scientific and Technical Information (OSTI.GOV)

Norris, J.; Daniels, B.

1986-02-01

The fancy plot package is a group of five programs which allow the user to make 2- and 3-dimensional document quality plots from the SIG data base. The fancyplot package was developed using a DEC VT100 terminal fitted with a Digital Engineering Retrographics board and the QMS Laserprinter. If a terminal emulates the VT100/Retrographic terminal the package should work. A Pericom terminal for example, works perfectly. The fancy plot package is available to provide report-ready plots without resorting to cutting and pasting. This package is contained in programs FFP, TFP, TDFD, 3DFFP and 3DTFP in directory ERD131::USER2 DISK:(HUDSON.SIG). These programsmore » may be summarized as follows: FFP - 2-Dimensional Frequency Fancy Plots with magnitude/phase option; TFP - 2-Dimensional Time Fancy Plots; TDFD - 2-Dimensional Time Domain Frequency Domain Plots; and 3DFFP - equally spaced 3-Dimensional Frequency Fancy Plots; 3DTFP - equally spaced 3-Dimensional Time Plots. 8 figs.« less

Some methodical peculiarities of analysis of small-mass samples by SRXFA

NASA Astrophysics Data System (ADS)

Kudryashova, A. F.; Tarasov, L. S.; Ulyanov, A. A.; Baryshev, V. B.

1989-10-01

The stability of work of the element analysis station on the storage rings VEPP-3 and VEPP-4 in INP (Novosibirsk, USSR) was demonstrated on the example of three sets of rare element analyses carried out by SRXFA in May 1985, January and May-June 1988. These data show that there are some systematic deviations in the results of measurements of Zr and La contents. SRXFA and INAA data have been compared for the latter element. A false linear correlation on the Rb-Sr plot in one set of analyses has been attributed to an overlapping artificial Sr peak on a Rb peak. The authors proposed sequences of registration of spectra and computer treatment for samples and standards. Such sequences result in better final concentration data.

Accounting for rate variation among lineages in comparative demographic analyses

USGS Publications Warehouse

Hope, Andrew G.; Ho, Simon Y. W.; Malaney, Jason L.; Cook, Joseph A.; Talbot, Sandra L.

2014-01-01

Genetic analyses of contemporary populations can be used to estimate the demographic histories of species within an ecological community. Comparison of these demographic histories can shed light on community responses to past climatic events. However, species experience different rates of molecular evolution, and this presents a major obstacle to comparative demographic analyses. We address this problem by using a Bayesian relaxed-clock method to estimate the relative evolutionary rates of 22 small mammal taxa distributed across northwestern North America. We found that estimates of the relative molecular substitution rate for each taxon were consistent across the range of sampling schemes that we compared. Using three different reference rates, we rescaled the relative rates so that they could be used to estimate absolute evolutionary timescales. Accounting for rate variation among taxa led to temporal shifts in our skyline-plot estimates of demographic history, highlighting both uniform and idiosyncratic evolutionary responses to directional climate trends for distinct ecological subsets of the small mammal community. Our approach can be used in evolutionary analyses of populations from multiple species, including comparative demographic studies.

The rainfall plot: its motivation, characteristics and pitfalls.

PubMed

Domanska, Diana; Vodák, Daniel; Lund-Andersen, Christin; Salvatore, Stefania; Hovig, Eivind; Sandve, Geir Kjetil

2017-05-18

A visualization referred to as rainfall plot has recently gained popularity in genome data analysis. The plot is mostly used for illustrating the distribution of somatic cancer mutations along a reference genome, typically aiming to identify mutation hotspots. In general terms, the rainfall plot can be seen as a scatter plot showing the location of events on the x-axis versus the distance between consecutive events on the y-axis. Despite its frequent use, the motivation for applying this particular visualization and the appropriateness of its usage have never been critically addressed in detail. We show that the rainfall plot allows visual detection even for events occurring at high frequency over very short distances. In addition, event clustering at multiple scales may be detected as distinct horizontal bands in rainfall plots. At the same time, due to the limited size of standard figures, rainfall plots might suffer from inability to distinguish overlapping events, especially when multiple datasets are plotted in the same figure. We demonstrate the consequences of plot congestion, which results in obscured visual data interpretations. This work provides the first comprehensive survey of the characteristics and proper usage of rainfall plots. We find that the rainfall plot is able to convey a large amount of information without any need for parameterization or tuning. However, we also demonstrate how plot congestion and the use of a logarithmic y-axis may result in obscured visual data interpretations. To aid the productive utilization of rainfall plots, we demonstrate their characteristics and potential pitfalls using both simulated and real data, and provide a set of practical guidelines for their proper interpretation and usage.

SDAR 1.0 a New Quantitative Toolkit for Analyze Stratigraphic Data

NASA Astrophysics Data System (ADS)

Ortiz, John; Moreno, Carlos; Cardenas, Andres; Jaramillo, Carlos

2015-04-01

Since the foundation of stratigraphy geoscientists have recognized that data obtained from stratigraphic columns (SC), two dimensional schemes recording descriptions of both geological and paleontological features (e.g., thickness of rock packages, grain size, fossil and lithological components, and sedimentary structures), are key elements for establishing reliable hypotheses about the distribution in space and time of rock sequences, and ancient sedimentary environmental and paleobiological dynamics. Despite the tremendous advances on the way geoscientists store, plot, and quantitatively analyze sedimentological and paleontological data (e.g., Macrostrat [http://www.macrostrat.org/], Paleobiology Database [http://www.paleodb.org/], respectively), there is still a lack of computational methodologies designed to quantitatively examine data from a highly detailed SCs. Moreover, frequently the stratigraphic information is plotted "manually" using vector graphics editors (e.g., Corel Draw, Illustrator), however, this information although store on a digital format, cannot be used readily for any quantitative analysis. Therefore, any attempt to examine the stratigraphic data in an analytical fashion necessarily takes further steps. Given these issues, we have developed the sofware 'Stratigraphic Data Analysis in R' (SDAR), which stores in a database all sedimentological, stratigraphic, and paleontological information collected from a SC, allowing users to generate high-quality graphic plots (including one or multiple features stored in the database). SDAR also encompasses quantitative analyses helping users to quantify stratigraphic information (e.g. grain size, sorting and rounding, proportion of sand/shale). Finally, given that the SDAR analysis module, has been written in the open-source high-level computer language "R graphics/statistics language" [R Development Core Team, 2014], it is already loaded with many of the crucial features required to accomplish basic and complex tasks of statistical analysis (i.e., R language provide more than hundred spatial libraries that allow users to explore various Geostatistics and spatial analysis). Consequently, SDAR allows a deeper exploration of the stratigraphic data collected in the field, it will allow the geoscientific community in the near future to develop complex analyses related with the distribution in space and time of rock sequences, such as lithofacial correlations, by a multivariate comparison between empirical SCs with quantitative lithofacial models established from modern sedimentary environments.

Evaluating Functional Diversity: Missing Trait Data and the Importance of Species Abundance Structure and Data Transformation

PubMed Central

Bryndová, Michala; Kasari, Liis; Norberg, Anna; Weiss, Matthias; Bishop, Tom R.; Luke, Sarah H.; Sam, Katerina; Le Bagousse-Pinguet, Yoann; Lepš, Jan; Götzenberger, Lars; de Bello, Francesco

2016-01-01

Functional diversity (FD) is an important component of biodiversity that quantifies the difference in functional traits between organisms. However, FD studies are often limited by the availability of trait data and FD indices are sensitive to data gaps. The distribution of species abundance and trait data, and its transformation, may further affect the accuracy of indices when data is incomplete. Using an existing approach, we simulated the effects of missing trait data by gradually removing data from a plant, an ant and a bird community dataset (12, 59, and 8 plots containing 62, 297 and 238 species respectively). We ranked plots by FD values calculated from full datasets and then from our increasingly incomplete datasets and compared the ranking between the original and virtually reduced datasets to assess the accuracy of FD indices when used on datasets with increasingly missing data. Finally, we tested the accuracy of FD indices with and without data transformation, and the effect of missing trait data per plot or per the whole pool of species. FD indices became less accurate as the amount of missing data increased, with the loss of accuracy depending on the index. But, where transformation improved the normality of the trait data, FD values from incomplete datasets were more accurate than before transformation. The distribution of data and its transformation are therefore as important as data completeness and can even mitigate the effect of missing data. Since the effect of missing trait values pool-wise or plot-wise depends on the data distribution, the method should be decided case by case. Data distribution and data transformation should be given more careful consideration when designing, analysing and interpreting FD studies, especially where trait data are missing. To this end, we provide the R package “traitor” to facilitate assessments of missing trait data. PMID:26881747

Mitigation of dimethazone residues in soil and runoff water from agricultural field.

PubMed

Antonious, George F

2011-01-01

Dimethazone, also known as clomazone [2-[(2-chlorophenyl) methyl]- 4,4-dimethyl-3-isoxaolidinone] is a pre-emergent nonionic herbicide commonly used in agriculture. A field study was conducted on a silty-loam soil of 10 % slope to monitor off-site movement and persistence of dimethazone in soil under three management practices. Eighteen plots of 22 x 3.7 m each were separated using stainless steel metal borders and the soil in six plots was mixed with municipal sewage sludge (MSS) and yard waste (YW) compost (MSS+YW) at 15 t acre⁻¹ on dry weight basis, six plots were mixed with MSS at 15 t acre⁻¹, and six unamended plots (NM) were used for comparison purposes. The objectives of this investigation were to: (i) monitor the dissipation and half-life (T₁/₂) of dimethazone in soil under three management practices; (ii) determine the concentration of dimethazone residues in runoff and infiltration water following natural rainfall events; and (iii) assess the impact of soil amendments on the transport of NO₃, NH₄, and P into surface and subsurface water. Gas chromatography/mass spectrometery (GC/MS) analyses of soil extracts indicated the presence of ion fragments at m/z 125 and 204 that can be used for identification of dimethazone residues. Intitial deposits of dimethazone varied from 1.3 μg g⁻¹ dry native soil to 3.2 and 11.8 μg g⁻¹ dry soil in MSS and MSS+YW amended soil, respectively. Decline of dimethazone residues in the top 15 cm native soil and soil incorporated with amendments revealed half-life (T₁/₂) values of 18.8, 25.1, and 43.0 days in MSS+YW, MSS, and NM treatments, respectively. Addition of MSS+YW mix and MSS alone to native soil increased water infiltration, lowering surface runoff water volume and dimethazone residues in runoff following natural rainfall events.

Evaluating Functional Diversity: Missing Trait Data and the Importance of Species Abundance Structure and Data Transformation.

PubMed

Májeková, Maria; Paal, Taavi; Plowman, Nichola S; Bryndová, Michala; Kasari, Liis; Norberg, Anna; Weiss, Matthias; Bishop, Tom R; Luke, Sarah H; Sam, Katerina; Le Bagousse-Pinguet, Yoann; Lepš, Jan; Götzenberger, Lars; de Bello, Francesco

2016-01-01

Functional diversity (FD) is an important component of biodiversity that quantifies the difference in functional traits between organisms. However, FD studies are often limited by the availability of trait data and FD indices are sensitive to data gaps. The distribution of species abundance and trait data, and its transformation, may further affect the accuracy of indices when data is incomplete. Using an existing approach, we simulated the effects of missing trait data by gradually removing data from a plant, an ant and a bird community dataset (12, 59, and 8 plots containing 62, 297 and 238 species respectively). We ranked plots by FD values calculated from full datasets and then from our increasingly incomplete datasets and compared the ranking between the original and virtually reduced datasets to assess the accuracy of FD indices when used on datasets with increasingly missing data. Finally, we tested the accuracy of FD indices with and without data transformation, and the effect of missing trait data per plot or per the whole pool of species. FD indices became less accurate as the amount of missing data increased, with the loss of accuracy depending on the index. But, where transformation improved the normality of the trait data, FD values from incomplete datasets were more accurate than before transformation. The distribution of data and its transformation are therefore as important as data completeness and can even mitigate the effect of missing data. Since the effect of missing trait values pool-wise or plot-wise depends on the data distribution, the method should be decided case by case. Data distribution and data transformation should be given more careful consideration when designing, analysing and interpreting FD studies, especially where trait data are missing. To this end, we provide the R package "traitor" to facilitate assessments of missing trait data.

Comparison of type 2 diabetes mellitus incidence in different phases of hepatitis B virus infection: A meta-analysis.

PubMed

Shen, Yi; Zhang, Sheng; Wang, Xulin; Wang, Yuanyuan; Zhang, Jian; Qin, Gang; Li, Wenchao; Ding, Kun; Zhang, Lei; Liang, Feng

2017-10-01

Because whether hepatitis B virus infection increases the risk of type 2 diabetes mellitus has been a controversial topic, pair-wise and network meta-analyses of published literature were carried out to accurately evaluate the association between different phases of hepatitis B virus infection and the risk of type 2 diabetes mellitus. A comprehensive literature retrieval was conducted from the PubMed, Embase, Cochrane Library and Chinese Database to identify epidemiological studies on the association between hepatitis B virus infection and the risk of type 2 diabetes mellitus that were published from 1999 to 2015. A pair-wise meta-analysis of direct evidence was performed to estimate the pooled odds ratios and 95% confidence intervals. A network meta-analysis was conducted, including the construction of a network plot, inconsistency plot, predictive interval plot, comparison-adjusted funnel plot and rank diagram, to graphically link the direct and indirect comparisons between different hepatitis B virus infective phases. Eighteen publications (n=113 639) describing 32 studies were included in this meta-analysis. In the pair-wise meta-analysis, the pooled odds ratio for type 2 diabetes mellitus in chronic hepatitis B cirrhosis patients was 1.76 (95% confidence interval: 1.44-2.14) when compared with non-cirrhotic chronic hepatitis B patients. In the network meta-analysis, six comparisons of four hepatitis B virus infectious states indicated the following descending order for the risk of type 2 diabetes mellitus: hepatitis B cirrhosis patients, non-cirrhotic chronic hepatitis B patients, hepatitis B virus carriers and non-hepatitis B virus controls. This study suggests that hepatitis B virus infection is not an independent risk factor for type 2 diabetes mellitus, but the development of cirrhosis may increase the incidence of type 2 diabetes mellitus cirrhosis. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Predicting patterns of non-native plant invasions in Yosemite National Park, California, USA

USGS Publications Warehouse

Underwood, E.C.; Klinger, R.; Moore, P.E.

2004-01-01

One of the major issues confronting management of parks and reserves is the invasion of non-native plant species. Yosemite National Park is one of the largest and best-known parks in the United States, harbouring significant cultural and ecological resources. Effective management of non-natives would be greatly assisted by information on their potential distribution that can be generated by predictive modelling techniques. Our goal was to identify key environmental factors that were correlated with the percent cover of non-native species and then develop a predictive model using the Genetic Algorithm for Rule-set Production technique. We performed a series of analyses using community-level data on species composition in 236 plots located throughout the park. A total of 41 non-native species were recorded which occurred in 23.7% of the plots. Plots with non-natives occurred most frequently at low- to mid-elevations, in flat areas with other herbaceous species. Based on the community-level results, we selected elevation, slope, and vegetation structure as inputs into the GARP model to predict the environmental niche of non-native species. Verification of results was performed using plot data reserved from the model, which calculated the correct prediction of non-native species occurrence as 76%. The majority of the western, lower-elevation portion of the park was predicted to have relatively low levels of non-native species occurrence, with highest concentrations predicted at the west and south entrances and in the Yosemite Valley. Distribution maps of predicted occurrences will be used by management to: efficiently target monitoring of non-native species, prioritize control efforts according to the likelihood of non-native occurrences, and inform decisions relating to the management of non-native species in postfire environments. Our approach provides a valuable tool for assisting decision makers to better manage non-native species, which can be readily adapted to target non-native species in other locations.

How to Avoid Errors in Error Propagation: Prediction Intervals and Confidence Intervals in Forest Biomass

NASA Astrophysics Data System (ADS)

Lilly, P.; Yanai, R. D.; Buckley, H. L.; Case, B. S.; Woollons, R. C.; Holdaway, R. J.; Johnson, J.

2016-12-01

Calculations of forest biomass and elemental content require many measurements and models, each contributing uncertainty to the final estimates. While sampling error is commonly reported, based on replicate plots, error due to uncertainty in the regression used to estimate biomass from tree diameter is usually not quantified. Some published estimates of uncertainty due to the regression models have used the uncertainty in the prediction of individuals, ignoring uncertainty in the mean, while others have propagated uncertainty in the mean while ignoring individual variation. Using the simple case of the calcium concentration of sugar maple leaves, we compare the variation among individuals (the standard deviation) to the uncertainty in the mean (the standard error) and illustrate the declining importance in the prediction of individual concentrations as the number of individuals increases. For allometric models, the analogous statistics are the prediction interval (or the residual variation in the model fit) and the confidence interval (describing the uncertainty in the best fit model). The effect of propagating these two sources of error is illustrated using the mass of sugar maple foliage. The uncertainty in individual tree predictions was large for plots with few trees; for plots with 30 trees or more, the uncertainty in individuals was less important than the uncertainty in the mean. Authors of previously published analyses have reanalyzed their data to show the magnitude of these two sources of uncertainty in scales ranging from experimental plots to entire countries. The most correct analysis will take both sources of uncertainty into account, but for practical purposes, country-level reports of uncertainty in carbon stocks, as required by the IPCC, can ignore the uncertainty in individuals. Ignoring the uncertainty in the mean will lead to exaggerated estimates of confidence in estimates of forest biomass and carbon and nutrient contents.

Rapid plant diversity assessment using a pixel nested plot design: A case study in Beaver Meadows, Rocky Mountain National Park, Colorado, USA

USGS Publications Warehouse

Kalkhan, M.A.; Stafford, E.J.; Stohlgren, T.J.

2007-01-01

Geospatial statistical modelling and thematic maps have recently emerged as effective tools for the management of natural areas at the landscape scale. Traditional methods for the collection of field data pertaining to questions of landscape were developed without consideration for the parameters of these applications. We introduce an alternative field sampling design based on smaller unbiased random plot and subplot locations called the pixel nested plot (PNP). We demonstrate the applicability of the PNP design of 15 m x 15 m to assess patterns of plant diversity and species richness across the landscape at Rocky Mountain National Park (RMNP), Colorado, USA in a time (cost)-efficient manner for field data collection. Our results produced comparable results to a previous study in the Beaver Meadow study (BMS) area within RMNP, where there was a demonstrated focus of plant diversity. Our study used the smaller PNP sampling design for field data collection which could be linked to geospatial information data and could be used for landscape-scale analyses and assessment applications. In 2003, we established 61 PNP in the eastern region of RMNP. We present a comparison between this approach using a sub-sample of 19 PNP from this data set and 20 of Modified Whittaker nested plots (MWNP) of 20 m x 50 m that were collected in the BMS area. The PNP captured 266 unique plant species while the MWNP captured 275 unique species. Based on a comparison of PNP and MWNP in the Beaver Meadows area, RMNP, the PNP required less time and area sampled to achieve a similar number of species sampled. Using the PNP approach for data collection can facilitate the ecological monitoring of these vulnerable areas at the landscape scale in a time- and therefore cost-effective manner. ?? 2007 The Authors.

Sonoran Desert ecosystem transformation by a C4 grass without the grass/fire cycle

USGS Publications Warehouse

Olsson, Aaryn D.; Betancourt, Julio; McClaran, Mitchel P.; Marsh, Stuart E.

2012-01-01

Aim Biological invasions facilitate ecosystem transformation by altering the structure and function, diversity, dominance and disturbance regimes. A classic case is the grass–fire cycle in which grass invasion increases the frequency, scale and/or intensity of wildfires and promotes the continued invasion of invasive grasses. Despite wide acceptance of the grass–fire cycle, questions linger about the relative roles that interspecific plant competition and fire play in ecosystem transformations. Location Sonoran Desert Arizona Upland of the Santa Catalina Mountains, Arizona, USA. Methods We measured species cover, density and saguaro (Carnegiea gigantea) size structure along gradients of Pennisetum ciliare invasion at 10 unburned/ungrazed P. ciliare patches. Regression models quantified differences in diversity, cover and density with respect to P. ciliare cover, and residence time and a Fisher's exact test detected demographic changes in saguaro populations. Because P. ciliare may have initially invaded locations that were both more invasible and less diverse, we ran analyses with and without the plots in which initial infestations were located. Results Richness and diversity decreased with P. ciliare cover as did cover and density of most dominant species. Richness and diversity declined with increasing time since invasion, suggesting an ongoing transformation. The proportion of old-to-young Carnegiea gigantea was significantly lower in plots with dominant P. ciliare cover. Main conclusions Rich desert scrub (15–25 species per plot) was transformed into depauperate grassland (2–5 species per plot) within 20 years following P. ciliare invasion without changes to the fire regime. While the onset of a grass–fire cycle may drive ecosystem change in the later stages and larger scales of grass invasions of arid lands, competition by P. ciliare can drive small-scale transformations earlier in the invasion. Linking competition-induced transformation rates with spatially explicit models of spread may be necessary for predicting landscape-level impacts on ecosystem processes in advance of a grass–fire cycle.

Discerning spatial and temporal LAI and clear-sky FAPAR variability during summer at the Toolik Lake vegetation monitoring grid (North Slope, Alaska)

NASA Astrophysics Data System (ADS)

Heim, B.; Beamish, A. L.; Walker, D. A.; Epstein, H. E.; Sachs, T.; Chabrillat, S.; Buchhorn, M.; Prakash, A.

2016-12-01

Ground data for the validation of satellite-derived terrestrial Essential Climate Variables (ECVs) at high latitudes are sparse. Also for regional model evaluation (e.g. climate models, land surface models, permafrost models), we lack accurate ranges of terrestrial ground data and face the problem of a large mismatch in scale. Within the German research programs `Regional Climate Change' (REKLIM) and the Environmental Mapping and Analysis Program (EnMAP), we conducted a study on ground data representativeness for vegetation-related variables within a monitoring grid at the Toolik Lake Long-Term Ecological Research station; the Toolik Lake station lies in the Kuparuk River watershed on the North Slope of the Brooks Mountain Range in Alaska. The Toolik Lake grid covers an area of 1 km2 containing Eight five grid points spaced 100 meters apart. Moist acidic tussock tundra is the most dominant vegetation type within the grid. Eight five permanent 1 m2 plots were also established to be representative of the individual gridpoints. Researchers from the University of Alaska Fairbanks have undertaken assessments at these plots, including Leaf Area Index (LAI) and field spectrometry to derive the Normalized Difference Vegetation Index (NDVI). During summer 2016, we conducted field spectrometry and LAI measurements at selected plots during early, peak and late summer. We experimentally measured LAI on more spatially extensive Elementary Sampling Units (ESUs) to investigate the spatial representativeness of the permanent 1 m2 plots and to map ESUs for various tundra types. LAI measurements are potentially influenced by landscape-inherent microtopography, sparse vascular plant cover, and dead woody matter. From field spectrometer measurements, we derived a clear-sky mid-day Fraction of Absorbed Photosynthetically Active Radiation (FAPAR). We will present the first data analyses comparing FAPAR and LAI, and maps of biophysically-focused ESUs for evaluation of the use of remote sensing data to estimate these ecosystem properties.

Advancements in LiDAR-based registration of FIA field plots

Treesearch

Demetrios Gatziolis

2012-01-01

Meaningful integration of National Forest Inventory field plot information with spectral imagery acquired from satellite or airborne platforms requires precise plot registration. Global positioning system-based plot registration procedures, such as the one employed by the Forest Inventory and Analysis (FIA) Program, yield plot coordinates that, although adequate for...

Faster simulation plots

NASA Technical Reports Server (NTRS)

Fowell, Richard A.

1989-01-01

Most simulation plots are heavily oversampled. Ignoring unnecessary data points dramatically reduces plot time with imperceptible effect on quality. The technique is suited to most plot devices. The departments laser printer's speed was tripled for large simulation plots by data thinning. This reduced printer delays without the expense of a faster laser printer. Surpisingly, it saved computer time as well. All plot data are now thinned, including PostScript and terminal plots. The problem, solution, and conclusions are described. The thinning algorithm is described and performance studies are presented. To obtain FORTRAN 77 or C source listings, mail a SASE to the author.

NEMAR plotting computer program

NASA Technical Reports Server (NTRS)

Myler, T. R.

1981-01-01

A FORTRAN coded computer program which generates CalComp plots of trajectory parameters is examined. The trajectory parameters are calculated and placed on a data file by the Near Earth Mission Analysis Routine computer program. The plot program accesses the data file and generates the plots as defined by inputs to the plot program. Program theory, user instructions, output definitions, subroutine descriptions and detailed FORTRAN coding information are included. Although this plot program utilizes a random access data file, a data file of the same type and formatted in 102 numbers per record could be generated by any computer program and used by this plot program.

A fast hidden line algorithm for plotting finite element models

NASA Technical Reports Server (NTRS)

Jones, G. K.

1982-01-01

Effective plotting of finite element models requires the use of fast hidden line plot techniques that provide interactive response. A high speed hidden line technique was developed to facilitate the plotting of NASTRAN finite element models. Based on testing using 14 different models, the new hidden line algorithm (JONES-D) appears to be very fast: its speed equals that for normal (all lines visible) plotting and when compared to other existing methods it appears to be substantially faster. It also appears to be very reliable: no plot errors were observed using the new method to plot NASTRAN models. The new algorithm was made part of the NPLOT NASTRAN plot package and was used by structural analysts for normal production tasks.

Tracking Changes in Cardiac Output: Statistical Considerations on the 4-Quadrant Plot and the Polar Plot Methodology.

PubMed

Saugel, Bernd; Grothe, Oliver; Wagner, Julia Y

2015-08-01

When comparing 2 technologies for measuring hemodynamic parameters with regard to their ability to track changes, 2 graphical tools are omnipresent in the literature: the 4-quadrant plot and the polar plot recently proposed by Critchley et al. The polar plot is thought to be the more advanced statistical tool, but care should be taken when it comes to its interpretation. The polar plot excludes possibly important measurements from the data. The polar plot transforms the data nonlinearily, which may prevent it from being seen clearly. In this article, we compare the 4-quadrant and the polar plot in detail and thoroughly describe advantages and limitations of each. We also discuss pitfalls concerning the methods to prepare the researcher for the sound use of both methods. Finally, we briefly revisit the Bland-Altman plot for the use in this context.

Storytelling in Earth sciences: The eight basic plots

NASA Astrophysics Data System (ADS)

Phillips, Jonathan

2012-11-01

Reporting results and promoting ideas in science in general, and Earth science in particular, is treated here as storytelling. Just as in literature and drama, storytelling in Earth science is characterized by a small number of basic plots. Though the list is not exhaustive, and acknowledging that multiple or hybrid plots and subplots are possible in a single piece, eight standard plots are identified, and examples provided: cause-and-effect, genesis, emergence, destruction, metamorphosis, convergence, divergence, and oscillation. The plots of Earth science stories are not those of literary traditions, nor those of persuasion or moral philosophy, and deserve separate consideration. Earth science plots do not conform those of storytelling more generally, implying that Earth scientists may have fundamentally different motivations than other storytellers, and that the basic plots of Earth Science derive from the characteristics and behaviors of Earth systems. In some cases preference or affinity to different plots results in fundamentally different interpretations and conclusions of the same evidence. In other situations exploration of additional plots could help resolve scientific controversies. Thus explicit acknowledgement of plots can yield direct scientific benefits. Consideration of plots and storytelling devices may also assist in the interpretation of published work, and can help scientists improve their own storytelling.

[Effect of comprehensive control and prevention for chronic disease in demonstration plot of Chongqing].

PubMed

Qi, Li; Ding, Xian-bin; Mao, De-qiang; Feng, Lian-gui; Wang, Yu-lin; Jiao, Yan; Zhang, Chun-hua; Lü, Xiao-yan; Li, Hong; Xia, Yi-yin

2013-03-01

To evaluate the effect of comprehensive control and prevention for chronic diseases in demonstration plot of Chongqing. Residents were enrolled through multi-stage stratified random sampling method from 17 districts or counties which had successfully established demonstration plots and 21 districts or counties which had not established demonstration plots (non-demonstration plot for short) yet on May, 2012. Questionnaire was designed to survey awareness of health knowledge, health behaviors and utilization of health supportive tools. The results were analyzed by SPSS 15.0 software. We investigated 15 108 residents, 6156 of which were in demonstration plot and others (8951) were not. The findings revealed the percentage of the people who were aware the national action of health lifestyle in demonstration plot and in non-demonstration plot were 44.4% (2734/6157) and 40.2% (3598/8951), respectively, and the awareness of the hypertension risk of too much sodium were 72.4% (4458/6156) and 67.5% (6042/8951), respectively, and the awareness of the cardinal vascular disease (CVD) risk of obesity and overweight were 77.2% (4753/6157) and 69.6% (6230/8951), respectively. About the residents' health behaviors in demonstration plot and in non-demonstration plot, the utilization rates of salt restriction scoop or pot were 23.5% (1447/6157) and 17.9% (1602/8951), and the utilization rates of oil restriction pot were 16.7% (1028/6157) and 11.8% (1064/8951), respectively. Totally, 33 of the 37 indexes were shown higher in demonstration plot than that in non-demonstration plot (P < 0.05). The chronic diseases comprehensive control and prevention in demonstration plot was more effective, and the remarkable improvement of health knowledge and behaviors level had been achieved in demonstration plot.

Program Aids Creation Of X-Y Plots

NASA Technical Reports Server (NTRS)

Jeletic, James F.

1993-01-01

VEGAS computer program enables application programmers to create X-Y plots in various modes through high-level subroutine calls. Modes consist of passive, autoupdate, and interactive modes. In passive mode, VEGAS takes input data, produces plot, and returns control to application program. In autoupdate mode, forms plots and automatically updates them as more information received. In interactive mode, displays plot and provides popup menus for user to alter appearance of plot or to modify data. Written in FORTRAN 77.

The quartile benefit plot: a middle ear surgery benefit assessment scheme.

PubMed

Schmerber, Sébastien; Karkas, Alexandre; Righini, Christian A; Chahine, Karim A

2008-05-01

The purpose of this study is to present a new method for the assessment of hearing improvement following stapes surgery, taking into account additional, previously omitted evaluation criteria. Retrospective. A quartile plot, based on the currently used Glasgow benefit plot, is structured to include two additional criteria of hearing assessment, namely the absence of postoperative sensorineural hearing loss and the closure of the air-bone gap to <10 dB. Pre- and postoperative hearing results of 132 patients diagnosed with bilateral otosclerosis and treated with bilateral stapes surgery were plotted on both the classical Glasgow benefit plot and the new quartile benefit plot. The difference in success assessment due to stricter assessment criteria is demonstrated. Functional success rate following bilateral stapes surgery as plotted on the traditional Glasgow benefit plot was 51.5%. Success rate for bilateral stapes surgery assessed on the new quartile plot with the addition of the two new criteria was 38.64%. The difference in success rates was found to be statistically significant. The basis of benefit assessment in stapes surgery solely on the mean deficit in air conduction results in overestimation of success rate. This study demonstrates that results that appear satisfactory when judged by the Glasgow benefit plot are of modest success when assessed by the new quartile plot. The quartile benefit plot presented in this paper provides a strict measure of presentation and evaluation of stapes surgery results.

How To ... Guide

Treesearch

Duncan C. Lutes; Robert E. Keane; John F. Caratti; Carl H. Key; Nathan C. Benson

2006-01-01

This is probably the most critical phase of FIREMON sampling because this plot ID must be unique across all plots that will be entered in the FIREMON database. The plot identifier is made up of three parts: Registration Code, Project Code, and Plot Number.The FIREMON Analysis Tools program will allow summarization and comparison of plots only if...

Calibration of multivariate scatter plots for exploratory analysis of relations within and between sets of variables in genomic research.

PubMed

Graffelman, Jan; van Eeuwijk, Fred

2005-12-01

The scatter plot is a well known and easily applicable graphical tool to explore relationships between two quantitative variables. For the exploration of relations between multiple variables, generalisations of the scatter plot are useful. We present an overview of multivariate scatter plots focussing on the following situations. Firstly, we look at a scatter plot for portraying relations between quantitative variables within one data matrix. Secondly, we discuss a similar plot for the case of qualitative variables. Thirdly, we describe scatter plots for the relationships between two sets of variables where we focus on correlations. Finally, we treat plots of the relationships between multiple response and predictor variables, focussing on the matrix of regression coefficients. We will present both known and new results, where an important original contribution concerns a procedure for the inclusion of scales for the variables in multivariate scatter plots. We provide software for drawing such scales. We illustrate the construction and interpretation of the plots by means of examples on data collected in a genomic research program on taste in tomato.

Measurement of surface water runoff from plots of two different sizes

NASA Astrophysics Data System (ADS)

Joel, Abraham; Messing, Ingmar; Seguel, Oscar; Casanova, Manuel

2002-05-01

Intensities and amounts of water infiltration and runoff on sloping land are governed by the rainfall pattern and soil hydraulic conductivity, as well as by the microtopography and soil surface conditions. These components are closely interrelated and occur simultaneously, and their particular contribution may change during a rainfall event, or their effects may vary at different field scales. The scale effect on the process of infiltration/runoff was studied under natural field and rainfall conditions for two plot sizes: small plots of 0·25 m2 and large plots of 50 m2. The measurements were carried out in the central region of Chile in a piedmont most recently used as natural pastureland. Three blocks, each having one large plot and five small plots, were established. Cumulative rainfall and runoff quantities were sampled every 5 min. Significant variations in runoff responses to rainfall rates were found for the two plot sizes. On average, large plots yielded only 40% of runoff quantities produced on small plots per unit area. This difference between plot sizes was observed even during periods of continuous runoff.

Development of a Dynamic Biomechanical Model for Load Carriage: Phase VI: Assessing Physiological and Biomechanical Loading Using the Portable Measurement System and the Dynamic Biomechanical Model

DTIC Science & Technology

2007-12-01

Using this timing information and kinematic information from the Optotrak ® motion analysis system, it was found that cadence (the number of strides...la synchronisation et de l’information sur la cinématique du système d’analyse des mouvements Optotrak ®, on a trouvé que la cadence (le nombre... Optotrak and upper body accelerations. .... 20 Figure 1-8. Accelerometer and vertical force plots showing heel strike and toe-off ..... 22 Figure 2-1

Fluorescent Sensing of Guanine and Guanosine Monophosphate with Conjugated Receptors Incorporating Aniline and Naphthyridine Moieties.

PubMed

Lu, Shao-Hung; Phang, Riping; Fang, Jim-Min

2016-04-15

Ethyne-linked naphthyridine-aniline conjugated molecules are selective sensors of decylguanine in dichloromethane and guanosine monophosphate in water (Kass = 16,000 M(-1)). The 2-acetamido-1,8-naphthyridine moiety binds with guanine in a DAA-ADD triply hydrogen-bonded motif. The aniline moiety enhances an electron-donating effect, and the substituent is tuned to attain extra hydrogen bonds, π-π stacking, and electrostatic interactions. The proposed binding modes are supported by a Job plot, ESI-MS, (1)H NMR, UV-vis, and fluorescence spectral analyses.

Video analysis of projectile motion using tablet computers as experimental tools

NASA Astrophysics Data System (ADS)

Klein, P.; Gröber, S.; Kuhn, J.; Müller, A.

2014-01-01

Tablet computers were used as experimental tools to record and analyse the motion of a ball thrown vertically from a moving skateboard. Special applications plotted the measurement data component by component, allowing a simple determination of initial conditions and g in order to explore the underlying laws of motion. This experiment can easily be performed by students themselves, providing more autonomy in their problem-solving processes than traditional learning approaches. We believe that this autonomy and the authenticity of the experimental tool both foster their motivation.

STR data for 15 autosomal STR markers from Paraná (Southern Brazil).

PubMed

Alves, Hemerson B; Leite, Fábio P N; Sotomaior, Vanessa S; Rueda, Fábio F; Silva, Rosane; Moura-Neto, Rodrigo S

2014-03-01

Allelic frequencies for 15 STR autosomal loci, using AmpFℓSTR® Identifiler™, forensic, and statistical parameters were calculated. All loci reached the Hardy-Weinberg equilibrium. The combined power of discrimination and mean power of exclusion were 0.999999999999999999 and 0.9999993, respectively. The MDS plot and NJ tree analysis, generated by FST matrix, corroborated the notion of the origins of the Paraná population as mainly European-derived. The combination of these 15 STR loci represents a powerful strategy for individual identification and parentage analyses for the Paraná population.

Classification using NMR-based metabolomics of Sophora flavescens grown in Japan and China.

PubMed

Suzuki, Ryuichiro; Ikeda, Yuriko; Yamamoto, Akari; Saima, Toyoe; Fujita, Tatsuya; Fukuda, Tatsuo; Fukuda, Eriko; Baba, Masaki; Okada, Yoshihito; Shirataki, Yoshiaki

2012-11-01

We demonstrate that NMR-based metabolomics can be used to identify the country of growth (Japan or China) of Sophora flavescens plants. Principle Component Analysis (PCA) conducted on extracts of S. flavescens grown in China provided data distinct from that of extracts of plants grown in Japan. Loading plot analysis showed signals characteristic of Japanese S. flavescens. NMR analyses showed these signals to be due to kurarinol (1) and kushenol H (2). These compounds were confirmed by HPLC analysis to be distinctive markers for Japanese S. flavescens.

AGARD Flight Test Series. Volume 10. Weapon Delivery Analysis and Ballistic Flight Testing (L’Analyse du Largage d’Armes et les en Vol Balistique).

DTIC Science & Technology

1992-07-01

Figure 24 Type 29 Telereader System 38 Figure 25 Contraves Semi-Automatic Film Reader 38 Figure 26 Typical Impact Plot 41 Figure 27 Delta Range...But they were at a loss as to how to account for the very observable and unpre- dictable pitching and yawing motions of bombs as they separated...nique. Just as had occurred during World War I, aircrews were forced to high altitudes to minimize aircraft losses from enemy defensive fire. And

Meteoric precipitation at Yucca Mountain, Nevada: Chemical and stable isotope analyses, 2006-09

USGS Publications Warehouse

Moscati, Richard J.; Scofield, Kevin M.

2011-01-01

Cumulatively, &delta18O values range from 3.0 to -20.4 per mil (%o) and &deltaD values range from 10 to -14%o. Winter-season precipitation commonly has isotopically lighter compositions. The cumulative &delta18O plotted against &deltaD shows that precipitation samples define a line with slope of 6.4, less than the 8 of the Global Meteoric Water Line. This difference in slope, typical of arid environments, is chiefly the result of evaporation of falling raindrops due to warmer air temperatures. ;

Analysing wind farm efficiency on complex terrains

NASA Astrophysics Data System (ADS)

Castellani, Francesco; Astolfi, Davide; Terzi, Ludovico; Schaldemose Hansen, Kurt; Sanz Rodrigo, Javier

2014-06-01

Actual performances of onshore wind farms are deeply affected both by wake interactions and terrain complexity: therefore monitoring how the efficiency varies with the wind direction is a crucial task. Polar efficiency plot is therefore a useful tool for monitoring wind farm performances. The approach deserves careful discussion for onshore wind farms, where orography and layout commonly affect performance assessment. The present work deals with three modern wind farms, owned by Sorgenia Green, located on hilly terrains with slopes from gentle to rough. Further, onshore wind farm of Nprrekffir Enge has been analysed as a reference case: its layout is similar to offshore wind farms and the efficiency is mainly driven by wakes. It is shown and justified that terrain complexity imposes a novel and more consistent way for defining polar efficiency. Dependency of efficiency on wind direction, farm layout and orography is analysed and discussed. Effects of atmospheric stability have been also investigated through MERRA reanalysis data from NASA satellites. Monin-Obukhov Length has been used to discriminate climate regimes.

Questa baseline and pre-mining ground-water quality investigation. 3. Historical ground-water quality for the Red River Valley, New Mexico

USGS Publications Warehouse

LoVetere, Sara H.; Nordstrom, D. Kirk; Maest, Ann S.; Naus, Cheryl A.

2003-01-01

Historical ground-water quality data for 100 wells in the Red River Valley between the U.S. Geological Survey streamflow-gaging station (08265000), near Questa, and Placer Creek east of the town of Red River, New Mexico, were compiled and reviewed. The tabulation included 608 water-quality records from 23 sources entered into an electronic database. Groundwater quality data were first collected at the Red River wastewater-treatment facility in 1982. Most analyses, however, were obtained between 1994 and 2002, even though the first wells were developed in 1962. The data were evaluated by considering (a) temporal consistency, (b) quality of sampling methods, (c) charge imbalance, and (d) replicate analyses. Analyses that qualified on the basis of these criteria were modeled to obtain saturation indices for gypsum, calcite, fluorite, gibbsite, manganite, and rhodocrosite. Plots created from the data illustrate that water chemistry in the Red River Valley is predominantly controlled by calcite dissolution, congruent gypsum dissolution, and pyrite oxidation.

Improved NASTRAN plotting

NASA Technical Reports Server (NTRS)

Chan, Gordon C.

1991-01-01

The new 1991 COSMIC/NASTRAN version, compatible with the older versions, tries to remove some old constraints and make it easier to extract information from the plot file. It also includes some useful improvements and new enhancements. New features available in the 1991 version are described. They include a new PLT1 tape with simplified ASCII plot commands and short records, combined hidden and shrunk plot, an x-y-z coordinate system on all structural plots, element offset plot, improved character size control, improved FIND and NOFIND logic, a new NASPLOT post-prosessor to perform screen plotting or generate PostScript files, and a BASIC/NASTPLOT program for PC.

Spatial Analysis of China Province-level Perinatal Mortality

PubMed Central

XIANG, Kun; SONG, Deyong

2016-01-01

Background: Using spatial analysis tools to determine the spatial patterns of China province-level perinatal mortality and using spatial econometric model to examine the impacts of health care resources and different socio-economic factors on perinatal mortality. Methods: The Global Moran’s I index is used to examine whether the spatial autocorrelation exists in selected regions and Moran’s I scatter plot to examine the spatial clustering among regions. Spatial econometric models are used to investigate the spatial relationships between perinatal mortality and contributing factors. Results: The overall Moran’s I index indicates that perinatal mortality displays positive spatial autocorrelation. Moran’s I scatter plot analysis implies that there is a significant clustering of mortality in both high-rate regions and low-rate regions. The spatial econometric models analyses confirm the existence of a direct link between perinatal mortality and health care resources, socio-economic factors. Conclusions: Since a positive spatial autocorrelation has been detected in China province-level perinatal mortality, the upgrading of regional economic development and medical service level will affect the mortality not only in region itself but also its adjacent regions. PMID:27398334

Study of the Effect of the Strategy of Heating on the Mudejar Church of Santa Maria in Ateca (Spain) for Preventive Conservation of the Altarpiece Surroundings

PubMed Central

García-Diego, Fernando-Juan; Fernández-Navajas, Ángel; Beltrán, Pedro; Merello, Paloma

2013-01-01

The mudéjar church of Santa María (Ateca) is valuable for its architecture and the altarpiece contained inside. Ateca is a village with continental climate characterized by cold winters and hot summers. In this paper we are interested in analysing the effect of temperature and relative humidity (RH) changes produced by the heating system on the altarpiece. Therefore, a monitoring system of 15 temperature and 15 relative humidity sensors was installed with a recording frequency of a data point per minute. The main contribution of this paper is the quantitative study of the effect of the heating system on the thermo-hygrometric parameters using statistical techniques such as ANOVA, mean daily trajectories or bivariate plots, and the proposal of an innovative dynamic contour plot. As results, the heating system produces a substantial increase (decrease) of temperature (RH) causing an hourly variation of these physical parameters detrimental to the conservation of the altarpiece, especially in its higher areas. PMID:24064599

Long Term Effects of Poultry Litter on Soil Physical and Chemical Properties in Cotton Plots

NASA Technical Reports Server (NTRS)

Surrency, J.; Tsegaye, T.; Coleman, T.; Fahsi, A.; Reddy, C.

1998-01-01

Poultry litter and compost can alter the moisture holding capacity of a soil. These organic materials can also increase the nutrient status of a soil during the decomposition process by microbial actions. The objective of this study was to evaluate the effect of poultry litter and compost on the dielectric constant and moisture holding capacity of soil. The Delta-T theta-probe was used to measure volumetric soil water content and the apparent dielectric constant of the upper 6-cm of the soil profile. Soil texture, pH, and organic matter were also determined for each plot. Results of these analyses indicated that the pH of the soil ranged from 6.4 to 7.7 and the volumetric soil moisture content ranged from 0.06 to 0.18 cu m/cu m for the upper 6-cm of the soil profile. The effect of poultry litter and compost on soil properties resulted in an increase in the volumetric moisture content and dielectric constant of the soil due to the improvement of the soil structure.

Calcium spiking activity and baseline calcium levels in ROS 17/2.8 cells exposed to extremely low frequency electromagnetic fields (ELF EMF).

PubMed

Shahidain, R; Mullins, R D; Sisken, J E

2001-02-01

To determine whether extremely low frequency electromagnetic fields can alter average free cytosolic calcium ion concentrations [Ca2+]i and transient increases in [Ca2+]i in populations of ROS 17/2.8 cells. Cells loaded with the calcium-selective luminescent photoprotein, aequorin, were placed in the bottom of a sample chamber, which was inserted into the gap of a previously described air gap reactor system where they were exposed either to sinusoidal magnetic fields at a variety of frequencies and flux densities or to sham conditions. Real-time recordings of photon counts due to aequorin luminescence were obtained and data were analysed with the use of probit plots. Probit plots of data obtained from cells exposed to the various magnetic fields were virtually superimposable over the data obtained for the same cultures during pre- and post-exposure sham or no-field periods. These experiments provided no evidence for any effects of ELF EMF, either positive or negative, on either average [Ca2+]i or on transient increases in [Ca2+]i.