Science.gov

Sample records for database web sites

  1. THE ECOTOX DATABASE AND ECOLOGICAL SOIL SCREENING LEVEL (ECO-SSL) WEB SITES

    EPA Science Inventory

    The EPA's ECOTOX database (http://www.epa.gov/ecotox/) provides a web browser search interface for locating aquatic and terrestrial toxic effects information. Data on more than 8100 chemicals and 5700 terrestrial and aquatic species are included in the database. Information is ...

  2. Web Sitings.

    ERIC Educational Resources Information Center

    Lo, Erika

    2001-01-01

    Presents seven mathematics games, located on the World Wide Web, for elementary students, including: Absurd Math: Pre-Algebra from Another Dimension; The Little Animals Activity Centre; MathDork Game Room (classic video games focusing on algebra); Lemonade Stand (students practice math and business skills); Math Cats (teaches the artistic beauty…

  3. Promoting Your Web Site.

    ERIC Educational Resources Information Center

    Raeder, Aggi

    1997-01-01

    Discussion of ways to promote sites on the World Wide Web focuses on how search engines work and how they retrieve and identify sites. Appropriate Web links for submitting new sites and for Internet marketing are included. (LRW)

  4. Commercial Web Site Links.

    ERIC Educational Resources Information Center

    Thelwall, Mike

    2001-01-01

    Discusses business use of the Web and related search engine design issues as well as research on general and academic links before reporting on a survey of the links published by a collection of business Web sites. Results indicate around 66% of Web sites do carry external links, most of which are targeted at a specific purpose, but about 17%…

  5. WWW: Neuroscience Web Sites

    ERIC Educational Resources Information Center

    Liu, Dennis

    2006-01-01

    The human brain contains an estimated 100 billion neurons, and browsing the Web, one might be led to believe that there's a Web site for every one of those cells. It's no surprise that there are lots of Web sites concerning the nervous system. After all, the human brain is toward the top of nearly everyone's list of favorite organs and of…

  6. The abandoned surface mining sites in the Czech Republic: mapping and creating a database with a GIS web application

    NASA Astrophysics Data System (ADS)

    Pokorný, Richard; Tereza Peterková, Marie

    2016-05-01

    Based on the vectorization of the 55-volume book series the Quarry Inventories of the Czechoslovak Republic/Czechoslovak Socialist Republic, published in the years 1932-1961, a new comprehensive database was built comprising 9958 surface mining sites of raw materials, which were active in the first half of the 20th century. The mapped area covers 40.9 % of the territory of the Czech Republic. For the purposes of visualization, a map application, the Quarry Inventories Online, was created that enables the data visualization.

  7. Elementary Classroom Web Sites

    ERIC Educational Resources Information Center

    Baker, Elizabeth A.

    2007-01-01

    The purpose of this study was to understand how elementary classroom Web sites support children's literacy. From a sociocultural perspective of literacy and a transformative stance toward the integration of literacy and technology, and building on explorations of new literacies, I discuss opportunities provided by the Internet that can support…

  8. SISMA (Site of Italian Strong Motion Accelerograms): a Web-Database of Ground Motion Recordings for Engineering Applications

    SciTech Connect

    Scasserra, Giuseppe; Lanzo, Giuseppe; D'Elia, Beniamino; Stewart, Jonathan P.

    2008-07-08

    The paper describes a new website called SISMA, i.e. Site of Italian Strong Motion Accelerograms, which is an Internet portal intended to provide natural records for use in engineering applications for dynamic analyses of structural and geotechnical systems. SISMA contains 247 three-component corrected motions recorded at 101 stations from 89 earthquakes that occurred in Italy in the period 1972-2002. The database of strong motion accelerograms was developed in the framework of a joint project between Sapienza University of Rome and University of California at Los Angeles (USA) and is described elsewhere. Acceleration histories and pseudo-acceleration response spectra (5% damping) are available for download from the website. Recordings can be located using simple search parameters related to seismic source and the recording station (e.g., magnitude, V{sub s30}, etc) as well as ground motion characteristics (e.g. peak ground acceleration, peak ground velocity, peak ground displacement, Arias intensity, etc.)

  9. Web Database Development: Implications for Academic Publishing.

    ERIC Educational Resources Information Center

    Fernekes, Bob

    This paper discusses the preliminary planning, design, and development of a pilot project to create an Internet accessible database and search tool for locating and distributing company data and scholarly work. Team members established four project objectives: (1) to develop a Web accessible database and decision tool that creates Web pages on the…

  10. Web site blues.

    PubMed

    Maruca, R F

    1999-01-01

    So far, Rachel Soltanoff's instincts had been right. As CEO in this fictional case study, she had successfully navigated TradeRite Software's transition from a news service for stockbrokers to a $70 million provider of shrink-wrapped software geared toward both brokers and the growing day-trader market. Now a well-financed start-up, Stock-net.com, was testing a very competitive product that traders could download directly over the Web. And TradeRite's Web site was nothing more than a collection of elaborate marketing brochures. Rachel knew she needed to start selling over the Web. But the e-commerce consultants she had hired to set up her Web store were behind schedule, and their 21-year-old CEO had just resigned. Her product manager, Lisa Bandini, was working overtime to transform TradeRite's entire product line into Web-aware applications to match Stocknet's, and Rachel had $2.5 million to launch them. But the consultants said it would take $5 million just to rent e-commerce capabilities. Ace sales VP Brian Rockart thought the company had already wasted too much time and money--money from his budget--on its Web site. Marketing VP Rob Collins thought TradeRite should focus on its core stockbroker customers. Chief Technical Officer Joe Martinez doesn't want to go ahead without a pilot project. Should Rachel try to convince Brian, Rob, and the rest of the senior management team that e-commerce is the way to go? Four commentators offer advice. PMID:10387770

  11. The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

    PubMed Central

    2002-01-01

    Background Comparative analysis of RNA sequences is the basis for the detailed and accurate predictions of RNA structure and the determination of phylogenetic relationships for organisms that span the entire phylogenetic tree. Underlying these accomplishments are very large, well-organized, and processed collections of RNA sequences. This data, starting with the sequences organized into a database management system and aligned to reveal their higher-order structure, and patterns of conservation and variation for organisms that span the phylogenetic tree, has been collected and analyzed. This type of information can be fundamental for and have an influence on the study of phylogenetic relationships, RNA structure, and the melding of these two fields. Results We have prepared a large web site that disseminates our comparative sequence and structure models and data. The four major types of comparative information and systems available for the three ribosomal RNAs (5S, 16S, and 23S rRNA), transfer RNA (tRNA), and two of the catalytic intron RNAs (group I and group II) are: (1) Current Comparative Structure Models; (2) Nucleotide Frequency and Conservation Information; (3) Sequence and Structure Data; and (4) Data Access Systems. Conclusions This online RNA sequence and structure information, the result of extensive analysis, interpretation, data collection, and computer program and web development, is accessible at our Comparative RNA Web (CRW) Site http://www.rna.icmb.utexas.edu. In the future, more data and information will be added to these existing categories, new categories will be developed, and additional RNAs will be studied and presented at the CRW Site. PMID:11869452

  12. Solution Kinetics Database on the Web

    National Institute of Standards and Technology Data Gateway

    SRD 40 NDRL/NIST Solution Kinetics Database on the Web (Web, free access)   Data for free radical processes involving primary radicals from water, inorganic radicals and carbon-centered radicals in solution, and singlet oxygen and organic peroxyl radicals in various solvents.

  13. Web Site Development Support

    NASA Technical Reports Server (NTRS)

    Abdul, Hameed

    2016-01-01

    This summer I assisted the RPT Program Office in developing a design plan to update their existing website to current NASA web standards. The finished website is intended for the general public, specifically potential customers interested in learning about NASA's chemical rocket test facility capabilities and test assignment process. The goal of the website is to give the public insight about the purpose and function of the RPT Program. Working on this project gave me the opportunity to learn skills necessary for effective project management. The RPT Program Office manages numerous facilities so they are required to travel often to other sites for meetings throughout the year. Maneuvering around the travel schedule of the office and the workload priority of the IT Department proved to be quite the challenge. I overcame the travel schedule of the office by frequently communicating and checking in with my mentor via email and telephone.

  14. Critical Path Web Site

    NASA Technical Reports Server (NTRS)

    Robinson, Judith L.; Charles, John B.; Rummel, John A. (Technical Monitor)

    2000-01-01

    Approximately three years ago, the Agency's lead center for the human elements of spaceflight (the Johnson Space Center), along with the National Biomedical Research Institute (NSBRI) (which has the lead role in developing countermeasures) initiated an activity to identify the most critical risks confronting extended human spaceflight. Two salient factors influenced this activity: first, what information is needed to enable a "go/no go" decision to embark on extended human spaceflight missions; and second, what knowledge and capabilities are needed to address known and potential health, safety and performance risks associated with such missions. A unique approach was used to first define and assess those risks, and then to prioritize them. This activity was called the Critical Path Roadmap (CPR) and it represents an opportunity to develop and implement a focused and evolving program of research and technology designed from a "risk reduction" perspective to prevent or minimize the risks to humans exposed to the space environment. The Critical Path Roadmap provides the foundation needed to ensure that human spaceflight, now and in the future, is as safe, productive and healthy as possible (within the constraints imposed on any particular mission) regardless of mission duration or destination. As a tool, the Critical Path Roadmap enables the decision maker to select from among the demonstrated or potential risks those that are to be mitigated, and the completeness of that mitigation. The primary audience for the CPR Web Site is the members of the scientific community who are interested in the research and technology efforts required for ensuring safe and productive human spaceflight. They may already be informed about the various space life sciences research programs or they may be newcomers. Providing the CPR content to potential investigators increases the probability of their delivering effective risk mitigations. Others who will use the CPR Web Site and its

  15. Critical Path Web Site

    NASA Technical Reports Server (NTRS)

    Robinson, Judith L.; Charles, John B.; Rummel, John A. (Technical Monitor)

    2000-01-01

    Approximately three years ago, the Agency's lead center for the human elements of spaceflight (the Johnson Space Center), along with the National Biomedical Research Institute (NSBRI) (which has the lead role in developing countermeasures) initiated an activity to identify the most critical risks confronting extended human spaceflight. Two salient factors influenced this activity: first, what information is needed to enable a "go/no go" decision to embark on extended human spaceflight missions; and second, what knowledge and capabilities are needed to address known and potential health, safety and performance risks associated with such missions. A unique approach was used to first define and assess those risks, and then to prioritize them. This activity was called the Critical Path Roadmap (CPR) and it represents an opportunity to develop and implement a focused and evolving program of research and technology designed from a "risk reduction" perspective to prevent or minimize the risks to humans exposed to the space environment. The Critical Path Roadmap provides the foundation needed to ensure that human spaceflight, now and in the future, is as safe, productive and healthy as possible (within the constraints imposed on any particular mission) regardless of mission duration or destination. As a tool, the Critical Path Roadmap enables the decisionmaker to select from among the demonstrated or potential risks those that are to be mitigated, and the completeness of that mitigation. The primary audience for the CPR Web Site is the members of the scientific community who are interested in the research and technology efforts required for ensuring safe and productive human spaceflight. They may already be informed about the various space life sciences research programs or they may be newcomers. Providing the CPR content to potential investigators increases the probability of their delivering effective risk mitigations. Others who will use the CPR Web Site and its content

  16. 76 FR 54807 - Notice of Proposed Information Collection: IMLS Museum Web Database: MuseumsCount.gov

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-02

    ... ARTS AND THE HUMANITIES Notice of Proposed Information Collection: IMLS Museum Web Database: Museums..., address, phone, e-mail, Web site, congressional district, and geographic location would be collected. The... of Museum and Library Services. Title: IMLS Museum Web Database, MuseumsCount.gov . OMB Number: To...

  17. Publicity through Better Web Site Design.

    ERIC Educational Resources Information Center

    Guenther, Kim

    1999-01-01

    Describes how to design Web sites that will reach the most people possible. Discusses publicity; Web search engine sites; adopting Web development standards; using metatags to effectively index a site; Web site addresses and naming conventions; writing for the Web; mass submissions; subject area knowledge; making Web rings; and additional ideas to…

  18. Astroquery: querying astronomical web forms and databases

    NASA Astrophysics Data System (ADS)

    Sipocz, Brigitta

    2016-03-01

    Astroquery is an Astropy affiliated package for a set of tools for querying astronomical web forms and databases. In this lightning talk I give an overview of the available services and the usage of the package including a live demo of a typical use case.

  19. Village Green Project: Web-accessible Database

    EPA Science Inventory

    The purpose of this web-accessible database is for the public to be able to view instantaneous readings from a solar-powered air monitoring station located in a public location (prototype pilot test is outside of a library in Durham County, NC). The data are wirelessly transmitte...

  20. Web interfaces to relational databases

    NASA Technical Reports Server (NTRS)

    Carlisle, W. H.

    1996-01-01

    This reports on a project to extend the capabilities of a Virtual Research Center (VRC) for NASA's Advanced Concepts Office. The work was performed as part of NASA's 1995 Summer Faculty Fellowship program and involved the development of a prototype component of the VRC - a database system that provides data creation and access services within a room of the VRC. In support of VRC development, NASA has assembled a laboratory containing the variety of equipment expected to be used by scientists within the VRC. This laboratory consists of the major hardware platforms, SUN, Intel, and Motorola processors and their most common operating systems UNIX, Windows NT, Windows for Workgroups, and Macintosh. The SPARC 20 runs SUN Solaris 2.4, an Intel Pentium runs Windows NT and is installed on a different network from the other machines in the laboratory, a Pentium PC runs Windows for Workgroups, two Intel 386 machines run Windows 3.1, and finally, a PowerMacintosh and a Macintosh IIsi run MacOS.

  1. AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana.

    PubMed

    Steffens, Nils Ole; Galuschka, Claudia; Schindler, Martin; Bülow, Lorenz; Hehl, Reinhard

    2005-07-01

    The AthaMap database generates a map of cis-regulatory elements for the Arabidopsis thaliana genome. AthaMap contains more than 7.4 x 10(6) putative binding sites for 36 transcription factors (TFs) from 16 different TF families. A newly implemented functionality allows the display of subsets of higher conserved transcription factor binding sites (TFBSs). Furthermore, a web tool was developed that permits a user-defined search for co-localizing cis-regulatory elements. The user can specify individually the level of conservation for each TFBS and a spacer range between them. This web tool was employed for the identification of co-localizing sites of known interacting TFs and TFs containing two DNA-binding domains. More than 1.8 x 10(5) combinatorial elements were annotated in the AthaMap database. These elements can also be used to identify more complex co-localizing elements consisting of up to four TFBSs. The AthaMap database and the connected web tools are a valuable resource for the analysis and the prediction of gene expression regulation at http://www.athamap.de. PMID:15980498

  2. Illinois hospital using Web to build database for relationship marketing.

    PubMed

    Rees, T

    2000-01-01

    Silver Cross Hospital and Medical Centers, Joliet, Ill., is promoting its Web site as a tool for gathering health information about patients and prospective patients in order to build a relationship marketing database. The database will enable the hospital to identify health care needs of consumers in Joliet, Will County and many southwestern suburbs of Chicago. The Web site is promoted in a multimedia advertising campaign that invites residents to participate in a Healthy Living Quiz that rewards respondents with free health screenings. The effort is part of a growing planning and marketing strategy in the health care industry called customer relationship management (CRM). Not only does a total CRM plan offer health care organizations the chance to discover the potential for meeting consumers' needs; it also helps find any marketplace gaps that may exist. PMID:11184485

  3. The Mouse SAGE Site: database of public mouse SAGE libraries.

    PubMed

    Divina, Petr; Forejt, Jirí

    2004-01-01

    The Mouse SAGE Site is a web-based database of all available public libraries generated by the Serial Analysis of Gene Expression (SAGE) from various mouse tissues and cell lines. The database contains mouse SAGE libraries organized in a uniform way and provides web-based tools for browsing, comparing and searching SAGE data with reliable tag-to-gene identification. A modified approach based on the SAGEmap database is used for reliable tag identification. The Mouse SAGE Site is maintained on an ongoing basis at the Institute of Molecular Genetics, Academy of Sciences of the Czech Republic and is accessible at the internet address http://mouse.biomed.cas.cz/sage/.

  4. An advanced web query interface for biological databases.

    PubMed

    Latendresse, Mario; Karp, Peter D

    2010-07-06

    Although most web-based biological databases (DBs) offer some type of web-based form to allow users to author DB queries, these query forms are quite restricted in the complexity of DB queries that they can formulate. They can typically query only one DB, and can query only a single type of object at a time (e.g. genes) with no possible interaction between the objects--that is, in SQL parlance, no joins are allowed between DB objects. Writing precise queries against biological DBs is usually left to a programmer skillful enough in complex DB query languages like SQL. We present a web interface for building precise queries for biological DBs that can construct much more precise queries than most web-based query forms, yet that is user friendly enough to be used by biologists. It supports queries containing multiple conditions, and connecting multiple object types without using the join concept, which is unintuitive to biologists. This interactive web interface is called the Structured Advanced Query Page (SAQP). Users interactively build up a wide range of query constructs. Interactive documentation within the SAQP describes the schema of the queried DBs. The SAQP is based on BioVelo, a query language based on list comprehension. The SAQP is part of the Pathway Tools software and is available as part of several bioinformatics web sites powered by Pathway Tools, including the BioCyc.org site that contains more than 500 Pathway/Genome DBs.

  5. The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0).

    PubMed Central

    Kemball-Cook, G; Tuddenham, E G

    1997-01-01

    The HAMSTeRS WWW site was set up in 1996 in order to facilitate easy access to, and aid understanding of, the causes of haemophilia A at the molecular level; previously, the first and second text editions of the database have been published in Nucleic Acids Research. This report describes the facilities originally available at the site and the recent additions which we have made to increase its usefulness to clinicians, the molecular genetics community and structural biologists interested in factor VIII. The database (version 3.0) has been completely updated with easy submission of point mutations, deletions and insertions via e-mail of custom-designed forms. The searching of point mutations in the database has been made simpler and more robust, with a concomitantly expanded real-time bioinformatic analysis of the database. A methods section devoted to mutation detection has been added, highlighting issues such as choice of technique and PCR primer sequences. Finally, a FVIII structure section gives access to 3D VRML (Virtual Reality Modelling Language) files for any user-definable residue in a FVIII A domain homology model based on the crystal structure of human caeruloplasmin, together with secondary structural data and a sound+video animation of the model. It is intended that the general availability of this model will assist both in interpretation of causative mutations and selection of candidate residues forin vitromutagenesis. The HAMSTeRS URL is http://europium.mrc.rpms.ac.uk. PMID:9016520

  6. The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0).

    PubMed

    Kemball-Cook, G; Tuddenham, E G

    1997-01-01

    The HAMSTeRS WWW site was set up in 1996 in order to facilitate easy access to, and aid understanding of, the causes of haemophilia A at the molecular level; previously, the first and second text editions of the database have been published in Nucleic Acids Research. This report describes the facilities originally available at the site and the recent additions which we have made to increase its usefulness to clinicians, the molecular genetics community and structural biologists interested in factor VIII. The database (version 3.0) has been completely updated with easy submission of point mutations, deletions and insertions via e-mail of custom-designed forms. The searching of point mutations in the database has been made simpler and more robust, with a concomitantly expanded real-time bioinformatic analysis of the database. A methods section devoted to mutation detection has been added, highlighting issues such as choice of technique and PCR primer sequences. Finally, a FVIII structure section gives access to 3D VRML (Virtual Reality Modelling Language) files for any user-definable residue in a FVIII A domain homology model based on the crystal structure of human caeruloplasmin, together with secondary structural data and a sound+video animation of the model. It is intended that the general availability of this model will assist both in interpretation of causative mutations and selection of candidate residues forin vitromutagenesis. The HAMSTeRS URL is http://europium.mrc.rpms.ac.uk.

  7. Reservoir High's TE Site Wins Web Site of the Month

    ERIC Educational Resources Information Center

    Tech Directions, 2008

    2008-01-01

    This article features "Mr. Rhine's Technology Education Web Site," a winner of the Web Site of the Month. This Web site was designed by Luke Rhine, a teacher at the Reservoir High School in Fulton, Maryland. Rhine's Web site offers course descriptions and syllabuses, class calendars, lectures and presentations, design briefs and other course…

  8. THE NASA AMES PAH IR SPECTROSCOPIC DATABASE VERSION 2.00: UPDATED CONTENT, WEB SITE, AND ON(OFF)LINE TOOLS

    SciTech Connect

    Boersma, C.; Mattioda, A. L.; Allamandola, L. J.; Bauschlicher, C. W. Jr.; Ricca, A.; Cami, J.; Peeters, E.; De Armas, F. Sánchez; Saborido, G. Puerta; Hudgins, D. M.

    2014-03-01

    A significantly updated version of the NASA Ames PAH IR Spectroscopic Database, the first major revision since its release in 2010, is presented. The current version, version 2.00, contains 700 computational and 75 experimental spectra compared, respectively, with 583 and 60 in the initial release. The spectra span the 2.5-4000 μm (4000-2.5 cm{sup -1}) range. New tools are available on the site that allow one to analyze spectra in the database and compare them with imported astronomical spectra as well as a suite of IDL object classes (a collection of programs utilizing IDL's object-oriented programming capabilities) that permit offline analysis called the AmesPAHdbIDLSuite. Most noteworthy among the additions are the extension of the computational spectroscopic database to include a number of significantly larger polycyclic aromatic hydrocarbons (PAHs), the ability to visualize the molecular atomic motions corresponding to each vibrational mode, and a new tool that allows one to perform a non-negative least-squares fit of an imported astronomical spectrum with PAH spectra in the computational database. Finally, a methodology is described in the Appendix, and implemented using the AmesPAHdbIDLSuite, that allows the user to enforce charge balance during the fitting procedure.

  9. Carnegie Science Academy Web Site

    NASA Astrophysics Data System (ADS)

    Kotwicki, John; Atzinger, Joe; Turso, Denise

    1997-11-01

    The Carnegie Science Academy is a professional society "For Teens...By Teens" at the Carnegie Science Center in Pittsburgh. The CSA Web Site [ http://csa.clpgh.org ] is designed for teens who have an interest in science and technology. This online or virtual science academy provides resources for teens in high school science classes. The Web site also allows students around the world to participate and communicate with other students, discuss current events in science, share opinions, find answers to questions, or make online friends. Visitors can enjoy the main components of the site or sign up for a free membership which allows access to our chat room for monthly meeting, online newsletter, members forum, and much more. Main components to the site include a spot for cool links and downloads, available for any visitor to download or view. Online exhibits are created by students to examine and publish an area of study and also allow teachers to easily post classroom activities as exhibits by submitting pictures and text. Random Access, the interactive part of the academy, allows users to share ideas and opinions. Planet CSA focuses on current events in science and the academy. In the future the CSA Web site will become a major resource for teens and science teachers providing materials that will allow students to further enhance their interest and experiences in science.

  10. Gauging the Success of Your Web Site

    ERIC Educational Resources Information Center

    Goldsborough, Reid

    2005-01-01

    Web analytics is a way to measure and optimize Web site performance, says Jason Burby, director of Web analytics for ZAAZ Inc., a Web design and development firm in Seattle with a countrywide client base. He compares it to using Evite, which is a useful, free web service that makes it easy to send out party and other invitations and,…

  11. Access to Space Interactive Design Web Site

    NASA Technical Reports Server (NTRS)

    Leon, John; Cutlip, William; Hametz, Mark

    2000-01-01

    The Access To Space (ATS) Group at NASA's Goddard Space Flight Center (GSFC) supports the science and technology community at GSFC by facilitating frequent and affordable opportunities for access to space. Through partnerships established with access mode suppliers, the ATS Group has developed an interactive Mission Design web site. The ATS web site provides both the information and the tools necessary to assist mission planners in selecting and planning their ride to space. This includes the evaluation of single payloads vs. ride-sharing opportunities to reduce the cost of access to space. Features of this site include the following: (1) Mission Database. Our mission database contains a listing of missions ranging from proposed missions to manifested. Missions can be entered by our user community through data input tools. Data is then accessed by users through various search engines: orbit parameters, ride-share opportunities, spacecraft parameters, other mission notes, launch vehicle, and contact information. (2) Launch Vehicle Toolboxes. The launch vehicle toolboxes provide the user a full range of information on vehicle classes and individual configurations. Topics include: general information, environments, performance, payload interface, available volume, and launch sites.

  12. Spectral imaging microscopy web sites and data.

    PubMed

    McNamara, George; Gupta, Amit; Reynaert, James; Coates, Thomas D; Boswell, Carl

    2006-08-01

    The Internet is enabling greater access to spectral imaging publications, spectral graphs, and data than that was available a generation ago. The spectral imaging systems discussed in this issue of Cytometry work because reagent and hardware spectra are reproducible, reusable, and provide input to spectral unmixing and spectral components recognition algorithms. These spectra need to be readily available in order to determine what to purchase, how to use it, and what the output means. We refer to several commercially sponsored and academic spectral web sites and discuss our spectral graphing and data sites. Sites include fluorescent dye graph servers from Invitrogen/Molecular Probes, BD Biosciences, Zeiss/Bio-Rad Cell Sciences, and filter set servers from Chroma Technology and Omega Optical. Several of these sites include data download capabilities. Recently, two microscope manufacturers have published on their web sites transmission curves for select objective lenses-crucial data for anyone doing multiphoton excitation microscopy. Notable among the academic sites, PhotoChemCAD 2.0 has over 200 dyes and a downloadable database/graphing program, and the USC-A Chemistry UV-vis Database displays absorption spectra of many dyes and indicators used in clinical histology and pathology. Our Fluorescent Spectra graphing/calculator site presents dyes, filters, and illumination data from many of these and additional sources. PubSpectra is our free download site which uses Microsoft Excel files as standardized human/machine readable format with over 2,000 biomedical spectra. The principle that data is not subject to copyright provides a framework in which all scientific data should be made freely accessible. PMID:16969821

  13. Spectral imaging microscopy web sites and data.

    PubMed

    McNamara, George; Gupta, Amit; Reynaert, James; Coates, Thomas D; Boswell, Carl

    2006-08-01

    The Internet is enabling greater access to spectral imaging publications, spectral graphs, and data than that was available a generation ago. The spectral imaging systems discussed in this issue of Cytometry work because reagent and hardware spectra are reproducible, reusable, and provide input to spectral unmixing and spectral components recognition algorithms. These spectra need to be readily available in order to determine what to purchase, how to use it, and what the output means. We refer to several commercially sponsored and academic spectral web sites and discuss our spectral graphing and data sites. Sites include fluorescent dye graph servers from Invitrogen/Molecular Probes, BD Biosciences, Zeiss/Bio-Rad Cell Sciences, and filter set servers from Chroma Technology and Omega Optical. Several of these sites include data download capabilities. Recently, two microscope manufacturers have published on their web sites transmission curves for select objective lenses-crucial data for anyone doing multiphoton excitation microscopy. Notable among the academic sites, PhotoChemCAD 2.0 has over 200 dyes and a downloadable database/graphing program, and the USC-A Chemistry UV-vis Database displays absorption spectra of many dyes and indicators used in clinical histology and pathology. Our Fluorescent Spectra graphing/calculator site presents dyes, filters, and illumination data from many of these and additional sources. PubSpectra is our free download site which uses Microsoft Excel files as standardized human/machine readable format with over 2,000 biomedical spectra. The principle that data is not subject to copyright provides a framework in which all scientific data should be made freely accessible.

  14. The Web site your doctor prescribes

    MedlinePlus

    ... Navigation Bar Home Current Issue Past Issues The Web site your doctor prescribes Past Issues / Summer 2006 ... gov ® is a free, comprehensive, up-to-date Web site with health information from the world's largest ...

  15. The Web site your doctor prescribes

    MedlinePlus

    ... Navigation Bar Home Current Issue Past Issues The Web site your doctor prescribes Past Issues / Summer 2008 ... gov® is a free, comprehensive, up-to-date Web site with health information from the world's largest ...

  16. Footprint Database and web services for the Herschel space observatory

    NASA Astrophysics Data System (ADS)

    Verebélyi, Erika; Dobos, László; Kiss, Csaba

    2015-08-01

    Using all telemetry and observational meta-data, we created a searchable database of Herschel observation footprints. Data from the Herschel space observatory is freely available for everyone but no uniformly processed catalog of all observations has been published yet. As a first step, we unified the data model for all three Herschel instruments in all observation modes and compiled a database of sky coverage information. As opposed to methods using a pixellation of the sphere, in our database, sky coverage is stored in exact geometric form allowing for precise area calculations. Indexing of the footprints allows for very fast search among observations based on pointing, time, sky coverage overlap and meta-data. This enables us, for example, to find moving objects easily in Herschel fields. The database is accessible via a web site and also as a set of REST web service functions which makes it usable from program clients like Python or IDL scripts. Data is available in various formats including Virtual Observatory standards.

  17. Teaching Web Site Design: Science or Art?

    ERIC Educational Resources Information Center

    Taylor, Mark John; Salces, Fausto Sainz; Duffy, Sandra Patricia

    2005-01-01

    This paper discusses an approach to teaching web site design to higher education (HE) students that attempts to balance the artistic and scientific aspects of the web site design process. The design of IT systems has traditionally been viewed as a technical activity. However, unlike existing types of IT systems, an organization's web site is…

  18. Web Site Design Benchmarking within Industry Groups.

    ERIC Educational Resources Information Center

    Kim, Sung-Eon; Shaw, Thomas; Schneider, Helmut

    2003-01-01

    Discussion of electronic commerce focuses on Web site evaluation criteria and applies them to different industry groups in Korea. Defines six categories of Web site evaluation criteria: business function, corporate credibility, contents reliability, Web site attractiveness, systematic structure, and navigation; and discusses differences between…

  19. Analysis of Elementary School Web Sites

    ERIC Educational Resources Information Center

    Hartshorne, Richard; Friedman, Adam; Algozzine, Bob; Kaur, Daljit

    2008-01-01

    While researchers have studied the use and value of educational software for many years, study of school Web sites and/or their effectiveness is limited. In this investigation, we identified goals and functions of school Web sites and used the foundations of effective Web site design to develop an evaluation checklist. We then applied these…

  20. Making Your Web Site an Information Clearinghouse.

    ERIC Educational Resources Information Center

    Houchin, Kevin

    2000-01-01

    University Web sites now offer a wide range of information, from up-to-date course catalogs and informational brochures to class notes for alumni. This article gives an array of ideas for enhancing the usefulness of a university's Web site. A sidebar discusses the pros and cons of linking the student newspaper to the university Web site. (JM)

  1. Business Faculty Research: Satisfaction with the Web versus Library Databases

    ERIC Educational Resources Information Center

    Dewald, Nancy H.; Silvius, Matthew A.

    2005-01-01

    Business faculty members teaching at undergraduate campuses of the Pennsylvania State University were surveyed in order to assess their satisfaction with free Web sources and with subscription databases for their professional research. Although satisfaction with the Web's ease of use was higher than that for databases, overall satisfaction for…

  2. Web Exploration Tools for a Fast Federated Optical Survey Database

    NASA Technical Reports Server (NTRS)

    Humphreys, Roberta M.

    2000-01-01

    We implemented several new web-based tools to improve the efficiency and versatility of access to the APS Catalog of the POSS I (Palomar Observatory-National Geographic Sky Survey) and its associated image database. The most important addition was a federated database system to link the APS Catalog and image database into one Internet-accessible database. With the FDBS, the queries and transactions on the integrated database are performed as if it were a single database. We installed Myriad the FDBS developed by Professor Jaideep Srivastava and members of his group in the University of Minnesota Computer Science Department. It is the first system to provide schema integration, query processing and optimization, and transaction management capabilities in a single framework. The attached figure illustrates the Myriad architecture. The FDBS permits horizontal access to the data, not just vertical. For example, for the APS, queries can be made not only by sky position, but also by any parameter present in either of the databases. APS users will be able to produce an image of all the blue galaxies and stellar sources for comparison with x-ray source error ellipses from AXAF (X Ray Astrophysics Facility) (Chandra) for example. The FDBS is now available as a beta release with the appropriate query forms at our web site. While much of our time was occupied with adapting Myriad to the APS environment, we also made major changes in Star Base, our DBMS for the Catalog, at the web interface to improve its efficiency for issuing and processing queries. Star Base is now three times faster for large queries. Improvements were also made at the web end of the image database for faster access; although work still needs to be done to the image database itself for more efficient return with the FDBS. During the past few years, we made several improvements to the database pipeline that creates the individual plate databases queries by StarBase. The changes include improved positions

  3. 77 FR 39269 - Submission for OMB Review, Comment Request, Proposed Collection: IMLS Museum Web Database...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-02

    ... published in the Federal Register on September 2, 2011, (FR vol. 76, No. 171, pg. 54807). No comments were... Web Database: MuseumsCount.gov AGENCY: Institute of Museum and Library Services, National Foundation..., address, phone, email, Web site, staff size, program details, collections care and other...

  4. 76 FR 1137 - Publicly Available Consumer Product Safety Information Database: Notice of Public Web Conferences

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-07

    ... site. In the Federal Register of December 9, 2010 (75 FR 76832), we published a final rule to establish... COMMISSION Publicly Available Consumer Product Safety Information Database: Notice of Public Web Conferences... Commission (``Commission,'' ``CPSC,'' or ``we'') is announcing two Web conferences to demonstrate...

  5. Web-based nuclear criticality safety bibliographic database

    SciTech Connect

    Koponen, B L; Huang, S T

    2000-06-21

    The Lawrence Livermore National Laboratory has prepared a Nuclear Criticality Safety Bibliographic Database that is now available via the Internet. This database is a component of the U.S. DOE Nuclear Criticality Safety Program (NCSP) Web site. This WWW resource was developed as part of the DOE response to the DNFSB Recommendation 97-2, which reflected the need to make criticality safety information available to a wide audience. To the extent possible, the hyperlinks on the Web pages direct the user to original source of the reference material in order to ensure accuracy and access to the latest versions. A master index is in place for simple navigation through the site. A search capability is available to assist in locating the on-line reference materials. Among the features included are: A user-friendly site map for ease of use; A personnel registry; Links to all major laboratories and organizations involved in the many aspects of criticality safety; General help for new criticality safety practitioners, including basic technical references and training modules; A discussion of computational methods; An interactive question and answer forum for the criticality safety community; and Collections of bibliographic references mdvahdation experiments. This paper will focus on the bibliographic database. This database evolved from earlier work done by the DOE's Nuclear Criticality Information System (NCIS) maintained at LLNL during the 1980s. The bibliographic database at the time of the termination of NCIS were composed principally of three parts: (1) A critical experiment bibliography of 1067 citations (reported in UCRL-52769); (2) A compilation of criticality safety papers from Volumes 1 through 41 of the Transactions of the American Nuclear Society (reported in UCRL-53369); and (3) A general criticality bibliography of several thousand citations (unpublished). When the NCIS project was terminated the database was nearly lost but, fortunately, several years later

  6. Information Architecture for Bilingual Web Sites.

    ERIC Educational Resources Information Center

    Cunliffe, Daniel; Jones, Helen; Jarvis, Melanie; Egan, Kevin; Huws, Rhian; Munro, Sian

    2002-01-01

    Discusses creating an information architecture for a bilingual Web site and reports work in progress on the development of a content-based bilingual Web site to facilitate shared resources between speech and language therapists. Considers a structural analysis of existing bilingual Web designs and explains a card-sorting activity conducted with…

  7. Garden Grove's Newsy Web Site Wins Honors

    ERIC Educational Resources Information Center

    Tech Directions, 2009

    2009-01-01

    This article details the construction and content of the Garden Grove (CA) High School Web site. The site wins the January 2009 "Tech Directions" Web Site of the Month. It provides information on the school's academic programs, administrative and teaching staff, guidance department, and athletics and other extracurricular activities, in addition…

  8. Use of Semantic Web technologies on the BBC Web Sites

    NASA Astrophysics Data System (ADS)

    Raimond, Yves; Scott, Tom; Oliver, Silver; Sinclair, Patrick; Smethurst, Michael

    The BBC publishes large amounts of content online, as text, audio and video. As the amount of content grows, we need to make it easy for users to locate items of interest and to draw coherent journeys across them. In this chapter, we describe our use of Semantic Web technologies for achieving this goal. We focus in particular on three BBC Web sites: BBC Programmes, BBC Music and BBC Wildlife Finder, and how those Web sites effectively use the wider Web as their Content Management System.

  9. Implementing a Web-Accessible Database.

    ERIC Educational Resources Information Center

    Draffan, E. A. B.; Corbett, Robbie

    2001-01-01

    Discusses the development and implementation of the United Kingdom's National Internet Accessibility Database (NIAD), how the design of the database was based on ease of use by both its target audience in higher education and those working on the database, and the approaches taken to ensure the successful implementation of the NIAD. (Author/LRW)

  10. Yes! You Can Build a Web Site.

    ERIC Educational Resources Information Center

    Holzberg, Carol

    2001-01-01

    With specially formatted templates or simple Web page editors, teachers can lay out text and graphics in a work space resembling the interface of a word processor. Several options are presented to help teachers build Web sites. ree templates include Class Homepage Builder, AppliTools: HomePage, MySchoolOnline.com, and BigChalk.com. Web design…

  11. A RESTful Web service interface to the ATLAS COOL database

    NASA Astrophysics Data System (ADS)

    Roe, S. A.; ATLAS Collaboration

    2010-04-01

    The COOL database in ATLAS is primarily used for storing detector conditions data, but also status flags which are uploaded summaries of information to indicate the detector reliability during a run. This paper introduces the use of CherryPy, a Python application server which acts as an intermediate layer between a web interface and the database, providing a simple means of storing to and retrieving from the COOL database which has found use in many web applications. The software layer is designed to be RESTful, implementing the common CRUD (Create, Read, Update, Delete) database methods by means of interpreting the HTTP method (POST, GET, PUT, DELETE) on the server along with a URL identifying the database resource to be operated on. The format of the data (text, xml etc) is also determined by the HTTP protocol. The details of this layer are described along with a popular application demonstrating its use, the ATLAS run list web page.

  12. Restructuring Web Site Design: An Alternative to WebTeams.

    ERIC Educational Resources Information Center

    Davis, Marc; Boyer, Janice

    In July 1997, the University Library at the University of Nebraska at Omaha adopted a new structural model for Web site development--the publishing metaphor. Rather than relying on an individual expert (the Webmaster) or a WebTeam comprised of a few individuals, the model permits everyone in the organization, regardless of position or Web…

  13. Web Accessibility--Does Your Web Site Make the Grade?

    ERIC Educational Resources Information Center

    Anderson, Melanie O.

    2004-01-01

    Web sites today should meet Web accessibility guidelines to comply with a host of regulations and guidelines for people with disabilities. Recent estimates state that 20% of the U.S. population has a disability and that 10% of the on-line population is disabled. Our aging population also experiences similar issues. This session will help you…

  14. General database for ground water site information.

    PubMed

    de Dreuzy, Jean-Raynald; Bodin, Jacques; Le Grand, Hervé; Davy, Philippe; Boulanger, Damien; Battais, Annick; Bour, Olivier; Gouze, Philippe; Porel, Gilles

    2006-01-01

    In most cases, analysis and modeling of flow and transport dynamics in ground water systems require long-term, high-quality, and multisource data sets. This paper discusses the structure of a multisite database (the H+ database) developed within the scope of the ERO program (French Environmental Research Observatory, http://www.ore.fr). The database provides an interface between field experimentalists and modelers, which can be used on a daily basis. The database structure enables the storage of a large number of data and data types collected from a given site or multiple-site network. The database is well suited to the integration, backup, and retrieval of data for flow and transport modeling in heterogeneous aquifers. It relies on the definition of standards and uses a templated structure, such that any type of geolocalized data obtained from wells, hydrological stations, and meteorological stations can be handled. New types of platforms other than wells, hydrological stations, and meteorological stations, and new types of experiments and/or parameters could easily be added without modifying the database structure. Thus, we propose that the database structure could be used as a template for designing databases for complex sites. An example application is the H+ database, which gathers data collected from a network of hydrogeological sites associated with the French Environmental Research Observatory.

  15. Development of Web-Based Tutorials for Online Databases.

    ERIC Educational Resources Information Center

    Prestamo, Anne M.

    1998-01-01

    Oklahoma State University needed remotely accessible bibliographic instruction materials covering various electronic databases. As a prototype for future development, the database ProQuest Direct (PQD) was selected as the Web-based tutorial subject. Discussion includes PQD selection criteria; audience/environment analysis; strategy analysis; unit…

  16. How to Optimize Your Web Site

    ERIC Educational Resources Information Center

    Dysart, Joe

    2008-01-01

    Given Google's growing market share--69% of all searches by the close of 2007--it's absolutely critical for any school on the Web to ensure its site is Google-friendly. A Google-optimized site ensures that students and parents can quickly find one's district on the Web even if they don't know the address. Plus, good search optimization simply…

  17. Web Site Enhancement of Traditional Classroom Pedagogy.

    ERIC Educational Resources Information Center

    Hiles, Timothy W.

    This paper describes the development of a World Wide Web site in an art history class at the University of Tennessee. The first section of the paper discusses digital technology in the art history classroom, including a comparison of the quality of digital images with slide projection. The second section describes a Web site created for a history…

  18. The Best Web Sites for Teachers.

    ERIC Educational Resources Information Center

    Sharp, Vicki F.; Levine, Martin G.; Sharp, Richard M.

    This book identifies more than 650 Internet and World Wide Web sites across the K-12 curriculum that can benefit teachers who may not have time to carry out lengthy searches themselves. The Web sites in this book are organized alphabetically by the following K-12 subject areas: art, bilingual education, drama, ESL, foreign language, health…

  19. Blue Ribbon Web Sites Contest Winners.

    ERIC Educational Resources Information Center

    Southworth, Samuel A.

    2001-01-01

    Presents a collection of prize-winning Web sites created by K-8 teachers nationwide. Some of the unique features of the Web sites include an online student-written newspaper; a sing-along section; a chronicle of the past 3 years of classes to see how the classes have evolved; and student art and writing projects. (SM)

  20. Creating a physician web site: Part One.

    PubMed

    Elliott, B

    2000-05-01

    The reasons why physicians should have professional web sites for their practices are presented. The options available to practitioners who want to create a site are reviewed. Advantages and disadvantages of virtual and non-virtual hosting are discussed. How to find and register one's own domain name, obtain a hosting service, and avenues available to build the web site are also described. Future articles will address finding specific hosting services and details regarding site construction.

  1. Narcissism and social networking Web sites.

    PubMed

    Buffardi, Laura E; Campbell, W Keith

    2008-10-01

    The present research examined how narcissism is manifested on a social networking Web site (i.e., Facebook.com). Narcissistic personality self-reports were collected from social networking Web page owners. Then their Web pages were coded for both objective and subjective content features. Finally, strangers viewed the Web pages and rated their impression of the owner on agentic traits, communal traits, and narcissism. Narcissism predicted (a) higher levels of social activity in the online community and (b) more self-promoting content in several aspects of the social networking Web pages. Strangers who viewed the Web pages judged more narcissistic Web page owners to be more narcissistic. Finally, mediational analyses revealed several Web page content features that were influential in raters' narcissistic impressions of the owners, including quantity of social interaction, main photo self-promotion, and main photo attractiveness. Implications of the expression of narcissism in social networking communities are discussed.

  2. SWS: accessing SRS sites contents through Web Services

    PubMed Central

    Romano, Paolo; Marra, Domenico

    2008-01-01

    Background Web Services and Workflow Management Systems can support creation and deployment of network systems, able to automate data analysis and retrieval processes in biomedical research. Web Services have been implemented at bioinformatics centres and workflow systems have been proposed for biological data analysis. New databanks are often developed by taking into account these technologies, but many existing databases do not allow a programmatic access. Only a fraction of available databanks can thus be queried through programmatic interfaces. SRS is a well know indexing and search engine for biomedical databanks offering public access to many databanks and analysis tools. Unfortunately, these data are not easily and efficiently accessible through Web Services. Results We have developed ‘SRS by WS’ (SWS), a tool that makes information available in SRS sites accessible through Web Services. Information on known sites is maintained in a database, srsdb. SWS consists in a suite of WS that can query both srsdb, for information on sites and databases, and SRS sites. SWS returns results in a text-only format and can be accessed through a WSDL compliant client. SWS enables interoperability between workflow systems and SRS implementations, by also managing access to alternative sites, in order to cope with network and maintenance problems, and selecting the most up-to-date among available systems. Conclusions Development and implementation of Web Services, allowing to make a programmatic access to an exhaustive set of biomedical databases can significantly improve automation of in-silico analysis. SWS supports this activity by making biological databanks that are managed in public SRS sites available through a programmatic interface. PMID:18387203

  3. Web site setup for pediatric dentists: a framework.

    PubMed

    Nainar, S M

    2000-01-01

    The objective of this paper is to describe a framework for the development of a simple web site for pediatric dentists. The four steps--domain name registration, web site hosting, web site design and web site publishing--are detailed. A pediatric dental web site can be created and maintained for less than $300 per annum.

  4. A Web-Based Nuclear Criticality Safety Bibliographic Database

    SciTech Connect

    Koponen, B L; Huang, S

    2007-02-22

    A bibliographic criticality safety database of over 13,000 records is available on the Internet as part of the U.S. Department of Energy's (DOE) Nuclear Criticality Safety Program (NCSP) website. This database is easy to access via the Internet and gets substantial daily usage. This database and other criticality safety resources are available at ncsp.llnl.gov. The web database has evolved from more than thirty years of effort at Lawrence Livermore National Laboratory (LLNL), beginning with compilations of critical experiment reports and American Nuclear Society Transactions.

  5. Evaluation and Criteria of the World Wide Web: Reference Web Sites.

    ERIC Educational Resources Information Center

    Csir, Floyd J.

    This paper applies an evaluation method for World Wide Web sites that provide access to online reference materials at academic and public libraries. The evaluation of Web sites was performed with a questionnaire form focusing on Web site currency, accuracy and relevancy; Web site organization/structure; Web site presentation; URL maintenance; and…

  6. Principles of web site development and design: powerful educational tools.

    PubMed

    Sproat, Sara Breckenridge

    2002-01-01

    Setting up an educational Web site is easy and is a huge benefit to the nursing profession. Although Web sites may radically differ in their audiences and intent, the principles behind a great site are the same. This article provides basic information, terminology, and advice on how to create effective Web sites using concepts of Web design and Web publishing. PMID:11984259

  7. Harvesting image databases from the Web.

    PubMed

    Schroff, Florian; Criminisi, Antonio; Zisserman, Andrew

    2011-04-01

    The objective of this work is to automatically generate a large number of images for a specified object class. A multimodal approach employing both text, metadata, and visual features is used to gather many high-quality images from the Web. Candidate images are obtained by a text-based Web search querying on the object identifier (e.g., the word penguin). The Webpages and the images they contain are downloaded. The task is then to remove irrelevant images and rerank the remainder. First, the images are reranked based on the text surrounding the image and metadata features. A number of methods are compared for this reranking. Second, the top-ranked images are used as (noisy) training data and an SVM visual classifier is learned to improve the ranking further. We investigate the sensitivity of the cross-validation procedure to this noisy training data. The principal novelty of the overall method is in combining text/metadata and visual features in order to achieve a completely automatic ranking of the images. Examples are given for a selection of animals, vehicles, and other classes, totaling 18 classes. The results are assessed by precision/recall curves on ground-truth annotated data and by comparison to previous approaches, including those of Berg and Forsyth and Fergus et al. PMID:21330688

  8. Use of web-enabled databases for complex animal health investigations.

    PubMed

    Durr, P A; Eastland, S

    2004-12-01

    Web-enabled databases developed in the late 1990s to help organise large web sites and allow data capture via browser-based forms. By enabling users outside a closed network access to a central database, they permit greater flexibility than traditional 'client-server' systems. Accordingly, web-enabled databases introduce a new tool for epidemiologists, permitting direct data capture at source and thus avoiding many of the delays and errors arising from paper forms and manual data entry. In addition, real-time data collection permits sophisticated decision support and reporting, and thus improved project co-ordination and participation. Nevertheless, the technology is complex and the development of a web-application requires an attention to information technology project management equal to that of the scientific trial or investigation. The potential and problems of web database applications are illustrated by a bespoke system ('PathMan') developed by the Veterinary Laboratories Agency of the United Kingdom Department for Environment, Food and Rural Affairs to manage a large multi-site study investigating the pathogenesis of bovine tuberculosis in England and Wales.

  9. SiteGuide: A Tool for Web Site Authoring Support

    NASA Astrophysics Data System (ADS)

    Hollink, Vera; de Boer, Viktor; van Someren, Maarten

    We present 'SiteGuide', a tool that helps web designers to decide which information will be included in a new web site and how the information will be organized. SiteGuide takes as input URLs of web sites from the same domain as the site the user wants to create. It automatically searches the pages of these example sites for common topics and common structural features. On the basis of these commonalities it creates a model of the example sites. The model can serve as a starting point for the new web site. Also, it can be used to check whether important elements are missing in a concept version of the new site. Evaluation shows that SiteGuide is able to detect a large part of the common topics in example sites and to present these topics in an understandable form to its users. First results of a user study indicate that Siteguide helps users to create web site designs with better structured contents and links.

  10. Web-based Access to Locally Developed Databases.

    ERIC Educational Resources Information Center

    Mischo, William H.; Schlembach, Mary C.

    1999-01-01

    Describes the Web-based technologies employed by the Grainger Engineering Library Information Center at the University of Illinois, Urbana-Champaign in implementing access to local information resources. Discusses Microsoft Active Server Pages (ASP) technologies and the associated local database structure and format, as well as the general…

  11. Promoting Teachers' Positive Attitude towards Web Use: A Study in Web Site Development

    ERIC Educational Resources Information Center

    Akpinar, Yavuz; Bayramoglu, Yusuf

    2008-01-01

    The purpose of the study was to examine effects of a compact training for developing web sites on teachers' web attitude, as composed of: web self efficacy, perceived web enjoyment, perceived web usefulness and behavioral intention to use the web. To measure the related constructs, the Web Attitude Scale was adapted into Turkish and tested with a…

  12. Usability Evaluation of Public Web Mapping Sites

    NASA Astrophysics Data System (ADS)

    Wang, C.

    2014-04-01

    Web mapping sites are interactive maps that are accessed via Webpages. With the rapid development of Internet and Geographic Information System (GIS) field, public web mapping sites are not foreign to people. Nowadays, people use these web mapping sites for various reasons, in that increasing maps and related map services of web mapping sites are freely available for end users. Thus, increased users of web mapping sites led to more usability studies. Usability Engineering (UE), for instance, is an approach for analyzing and improving the usability of websites through examining and evaluating an interface. In this research, UE method was employed to explore usability problems of four public web mapping sites, analyze the problems quantitatively and provide guidelines for future design based on the test results. Firstly, the development progress for usability studies were described, and simultaneously several usability evaluation methods such as Usability Engineering (UE), User-Centered Design (UCD) and Human-Computer Interaction (HCI) were generally introduced. Then the method and procedure of experiments for the usability test were presented in detail. In this usability evaluation experiment, four public web mapping sites (Google Maps, Bing maps, Mapquest, Yahoo Maps) were chosen as the testing websites. And 42 people, who having different GIS skills (test users or experts), gender (male or female), age and nationality, participated in this test to complete the several test tasks in different teams. The test comprised three parts: a pretest background information questionnaire, several test tasks for quantitative statistics and progress analysis, and a posttest questionnaire. The pretest and posttest questionnaires focused on gaining the verbal explanation of their actions qualitatively. And the design for test tasks targeted at gathering quantitative data for the errors and problems of the websites. Then, the results mainly from the test part were analyzed. The

  13. Web Site Credibility: Why Do People Believe What They Believe?

    ERIC Educational Resources Information Center

    Iding, Marie K.; Crosby, Martha E.; Auernheimer, Brent; Klemm, E. Barbara

    2009-01-01

    This research investigates university students' determinations of credibility of information on Web sites, confidence in their determinations, and perceptions of Web site authors' vested interests. In Study 1, university-level computer science and education students selected Web sites determined to be credible and Web sites that exemplified…

  14. Perceptions of Business Students' Feature Requirements in Educational Web Sites

    ERIC Educational Resources Information Center

    Hazari, Sunil; Johnson, Barbara

    2007-01-01

    There is paucity of original research that explains phenomena related to content organization and site design of educational Web sites. Educational Web sites are often used to provide Web-based instruction, which itself is a relatively recent phenomenon for business schools, and additional research is needed in this area. Educational Web sites are…

  15. A World Wide Web (WWW) server database engine for an organelle database, MitoDat.

    PubMed

    Lemkin, P F; Chipperfield, M; Merril, C; Zullo, S

    1996-03-01

    We describe a simple database search engine "dbEngine" which may be used to quickly create a searchable database on a World Wide Web (WWW) server. Data may be prepared from spreadsheet programs (such as Excel, etc.) or from tables exported from relationship database systems. This Common Gateway Interface (CGI-BIN) program is used with a WWW server such as available commercially, or from National Center for Supercomputer Algorithms (NCSA) or CERN. Its capabilities include: (i) searching records by combinations of terms connected with ANDs or ORs; (ii) returning search results as hypertext links to other WWW database servers; (iii) mapping lists of literature reference identifiers to the full references; (iv) creating bidirectional hypertext links between pictures and the database. DbEngine has been used to support the MitoDat database (Mendelian and non-Mendelian inheritance associated with the Mitochondrion) on the WWW.

  16. WebGeSTer DB—a transcription terminator database

    PubMed Central

    Mitra, Anirban; Kesarwani, Anil K.; Pal, Debnath; Nagaraja, Valakunja

    2011-01-01

    We present WebGeSTer DB, the largest database of intrinsic transcription terminators (http://pallab.serc.iisc.ernet.in/gester). The database comprises of a million terminators identified in 1060 bacterial genome sequences and 798 plasmids. Users can obtain both graphic and tabular results on putative terminators based on default or user-defined parameters. The results are arranged in different tiers to facilitate retrieval, as per the specific requirements. An interactive map has been incorporated to visualize the distribution of terminators across the whole genome. Analysis of the results, both at the whole-genome level and with respect to terminators downstream of specific genes, offers insight into the prevalence of canonical and non-canonical terminators across different phyla. The data in the database reinforce the paradigm that intrinsic termination is a conserved and efficient regulatory mechanism in bacteria. Our database is freely accessible. PMID:20972211

  17. Web-accessible proteome databases for microbial research.

    PubMed

    Pleissner, Klaus-Peter; Eifert, Till; Buettner, Sven; Schmidt, Frank; Boehme, Martina; Meyer, Thomas F; Kaufmann, Stefan H E; Jungblut, Peter R

    2004-05-01

    The analysis of proteomes of biological organisms represents a major challenge of the post-genome era. Classical proteomics combines two-dimensional electrophoresis (2-DE) and mass spectrometry (MS) for the identification of proteins. Novel technologies such as isotope coded affinity tag (ICAT)-liquid chromatography/mass spectrometry (LC/MS) open new insights into protein alterations. The vast amount and diverse types of proteomic data require adequate web-accessible computational and database technologies for storage, integration, dissemination, analysis and visualization. A proteome database system (http://www.mpiib-berlin.mpg.de/2D-PAGE) for microbial research has been constructed which integrates 2-DE/MS, ICAT-LC/MS and functional classification data of proteins with genomic, metabolic and other biological knowledge sources. The two-dimensional polyacrylamide gel electrophoresis database delivers experimental data on microbial proteins including mass spectra for the validation of protein identification. The ICAT-LC/MS database comprises experimental data for protein alterations of mycobacterial strains BCG vs. H37Rv. By formulating complex queries within a functional protein classification database "FUNC_CLASS" for Mycobacterium tuberculosis and Helicobacter pylori the researcher can gather precise information on genes, proteins, protein classes and metabolic pathways. The use of the R language in the database architecture allows high-level data analysis and visualization to be performed "on-the-fly". The database system is centrally administrated, and investigators without specific bioinformatic competence in database construction can submit their data. The database system also serves as a template for a prototype of a European Proteome Database of Pathogenic Bacteria. Currently, the database system includes proteome information for six strains of microorganisms.

  18. Global Terrestrial Network for Glaciers: Databases and Web interfaces

    NASA Astrophysics Data System (ADS)

    Raup, B.; Armstrong, R.; Fetterer, F.; Gartner-Roer, I.; Haeberli, W.; Hoelzle, M.; Khalsa, S. J. S.; Nussbaumer, S.; Weaver, R.; Zemp, M.

    2012-04-01

    The Global Terrestrial Network for Glaciers (GTN-G) is an umbrella organization with links to the Global Climate Observing System (GCOS), Global Terrestrial Observing System (GTOS), and UNESCO (all organizations under the United Nations), for the curation of several glacier-related databases. It is composed of the World Glacier Monitoring Service (WGMS), the U.S. National Snow and Ice Data Center (NSIDC), and the Global Land Ice Measurements from Space (GLIMS) initiative. The glacier databases include the World Glacier Inventory (WGI), the GLIMS Glacier Database, the Glacier Photograph Collection at NSIDC, and the Fluctuations of Glaciers (FoG) and Mass Balance databases at WGMS. We are working toward increased interoperability between these related databases. For example, the Web interface to the GLIMS Glacier Database has also included queryable layers for the WGI and FoG databases since 2008. To improve this further, we have produced a new GTN-G web portal (http://www.gtn-g.org/), which includes a glacier metadata browsing application. This web application allows the browsing of the metadata behind the main GTN-G databases, as well as querying the metadata in order to get to the source, no matter which database holds the data in question. A new glacier inventory, called the Randolph Glacier Inventory 1.0, has recently been compiled. This compilation, which includes glacier outlines that do not have the attributes or IDs or links to other data like the GLIMS data do, was motivated by the tight deadline schedule of the sea level chapter of the Fifth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC). Now served from the GLIMS website (http://glims.org/), it is designed to serve that narrowly focused research goal in the near term, and in the longer term will be incorporated into the multi-temporal glacier database of GLIMS. For the required merging of large sets of glacier outlines and association of proper IDs that tie together outlines

  19. Heterogeneous Database Integration Middleware Based on Web Services

    NASA Astrophysics Data System (ADS)

    Wei, Xianmin

    With the company further accelerating the process of information, the heterogeneity problem of each business system database is more and more salient. How to effectively use these historical data, integration of legacy systems, become a hot spot of integration field. In this paper, how to effectively address heterogeneity of data distribution, to achieve customer access, while maintaining the autonomy of the local system for the objectives of heterogeneous database integration middleware based on Web Services solutions.Applications show that middleware solution has certain feasibility and practicality.

  20. Published criteria for evaluating health related web sites: review

    PubMed Central

    Kim, Paul; Eng, Thomas R; Deering, Mary Jo; Maxfield, Andrew

    1999-01-01

    Objective To review published criteria for specifically evaluating health related information on the world wide web, and to identify areas of consensus. Design Search of world wide web sites and peer reviewed medical journals for explicit criteria for evaluating health related information on the web, using Medline and Lexis-Nexis databases, and the following internet search engines: Yahoo!, Excite, Altavista, Webcrawler, HotBot, Infoseek, Magellan Internet Guide, and Lycos. Criteria were extracted and grouped into categories. Results 29 published rating tools and journal articles were identified that had explicit criteria for assessing health related web sites. Of the 165 criteria extracted from these tools and articles, 132 (80%) were grouped under one of 12 specific categories and 33 (20%) were grouped as miscellaneous because they lacked specificity or were unique. The most frequently cited criteria were those dealing with content, design and aesthetics of site, disclosure of authors, sponsors, or developers, currency of information (includes frequency of update, freshness, maintenance of site), authority of source, ease of use, and accessibility and availability. Conclusions Results suggest that many authors agree on key criteria for evaluating health related web sites, and that efforts to develop consensus criteria may be helpful. The next step is to identify and assess a clear, simple set of consensus criteria that the general public can understand and use. Key messagesMany organisations and individuals have published criteria to evaluate health related information on the world wide webA literature and world wide web search found that the most frequently cited criteria were those dealing with content, design and aesthetics of site, disclosure of authors, sponsors, or developers, currency of information, authority of source, and ease of useCriteria related to confidentiality and privacy were only cited by one authorConsensus regarding critical criteria for

  1. Early Site Permit Demonstration Program: Nuclear Power Plant Siting Database

    1994-01-28

    This database is a repository of comprehensive licensing and technical reviews of siting regulatory processes and acceptance criteria for advanced light water reactor (ALWR) nuclear power plants. The program is designed to be used by applicants for an early site permit or combined construction permit/operating license (10CFRR522, Subparts A and C) as input for the development of the application. The database is a complete, menu-driven, self-contained package that can search and sort the supplied datamore » by topic, keyword, or other input. The software is designed for operation on IBM compatible computers with DOS.« less

  2. Ocean Instruments Web Site for Undergraduate, Secondary and Informal Education

    NASA Astrophysics Data System (ADS)

    Farrington, J. W.; Nevala, A.; Dolby, L. A.

    2004-12-01

    An Ocean Instruments web site has been developed that makes available information about ocean sampling and measurement instruments and platforms. The site features text, pictures, diagrams and background information written or edited by experts in ocean science and engineering and contains links to glossaries and multimedia technologies including video streaming, audio packages, and searchable databases. The site was developed after advisory meetings with selected professors teaching undergraduate classes who responded to the question, what could Woods Hole Oceanographic Institution supply to enhance undergraduate education in ocean sciences, life sciences, and geosciences? Prototypes were developed and tested with students, potential users, and potential contributors. The site is hosted by WHOI. The initial five instruments featured were provided by four WHOI scientists and engineers and by one Sea Education Association faculty member. The site is now open to contributions from scientists and engineers worldwide. The site will not advertise or promote the use of individual ocean instruments.

  3. PeptiSite: a structural database of peptide binding sites in 4D.

    PubMed

    Acharya, Chayan; Kufareva, Irina; Ilatovskiy, Andrey V; Abagyan, Ruben

    2014-03-21

    We developed PeptiSite, a comprehensive and reliable database of biologically and structurally characterized peptide-binding sites, in which each site is represented by an ensemble of its complexes with protein, peptide and small molecule partners. The unique features of the database include: (1) the ensemble site representation that provides a fourth dimension to the otherwise three dimensional data, (2) comprehensive characterization of the binding site architecture that may consist of a multimeric protein assembly with cofactors and metal ions and (3) analysis of consensus interaction motifs within the ensembles and identification of conserved determinants of these interactions. Currently the database contains 585 proteins with 650 peptide-binding sites. http://peptisite.ucsd.edu/ link allows searching for the sites of interest and interactive visualization of the ensembles using the ActiveICM web-browser plugin. This structural database for protein-peptide interactions enables understanding of structural principles of these interactions and may assist the development of an efficient peptide docking benchmark. PMID:24406170

  4. School Web Site of the Month

    ERIC Educational Resources Information Center

    Tech Directions, 2008

    2008-01-01

    This article features "Tech Directions" School Web Site of the Month. The website (http://satellite.stcharles.k12.la.us) was produced by technology education students at the Satellite Center of St. Charles Parish Public Schools in Luling, Louisiana. The Satellite Center focuses on the career paths projected to expand the most over the next decade.…

  5. Collaborative Community: Health Education Web Site

    ERIC Educational Resources Information Center

    McCabe, Setta

    2004-01-01

    Four community colleges in Western Massachusetts--Berkshire Community College (BCC), Greenfield Community College (GCC), Holyoke Community College (HCC), and Springfield Technical Community College (STCC)--have created a collaborative Web site, at www.healthprograms.org, to present information on allied health associate degrees or certificate…

  6. School Web Site of the Month

    ERIC Educational Resources Information Center

    Tech Directions, 2008

    2008-01-01

    This article showcases August's School Web Site of the Month, http://magnoliaisdcommunities.org/communities/bschuster, which was produced by Bradley H. Schuster (bschuster@magnoliaisd.org) and his students at Magnolia High School, Magnolia, Texas. Schuster teaches architectural drafting and building trades classes at both Magnolia High School and…

  7. Using Participatory Design to Improve Web Sites

    ERIC Educational Resources Information Center

    Nikolova-Houston, Tatiana

    2005-01-01

    In this article, the author, a doctoral candidate from the School of Information at the University of Texas-Austin, describes the experience gathered from her attempt to redesign her existing Web sites in order to supply online resources for Slavic and Byzantine studies. The use of participatory design, which involves the users in creating the…

  8. Gas Hydrate Research Database and Web Dissemination Channel

    SciTech Connect

    Micheal Frenkel; Kenneth Kroenlein; V Diky; R.D. Chirico; A. Kazakow; C.D. Muzny; M. Frenkel

    2009-09-30

    To facilitate advances in application of technologies pertaining to gas hydrates, a United States database containing experimentally-derived information about those materials was developed. The Clathrate Hydrate Physical Property Database (NIST Standard Reference Database {number_sign} 156) was developed by the TRC Group at NIST in Boulder, Colorado paralleling a highly-successful database of thermodynamic properties of molecular pure compounds and their mixtures and in association with an international effort on the part of CODATA to aid in international data sharing. Development and population of this database relied on the development of three components of information-processing infrastructure: (1) guided data capture (GDC) software designed to convert data and metadata into a well-organized, electronic format, (2) a relational data storage facility to accommodate all types of numerical and metadata within the scope of the project, and (3) a gas hydrate markup language (GHML) developed to standardize data communications between 'data producers' and 'data users'. Having developed the appropriate data storage and communication technologies, a web-based interface for both the new Clathrate Hydrate Physical Property Database, as well as Scientific Results from the Mallik 2002 Gas Hydrate Production Research Well Program was developed and deployed at http://gashydrates.nist.gov.

  9. Evaluating Domestic and International Web-Site Strategies.

    ERIC Educational Resources Information Center

    Simeon, Roblyn

    1999-01-01

    Presents the AIPD (attracting, informing, positioning, and delivering) approach to the evaluation of commercial Web sites that assess the strategic potential of Web sites, provides a framework for the development of competitive sites, and compares Web site strategies within and across national boundaries. Compares Internet strategies of Japanese…

  10. NIST Gas Hydrate Research Database and Web Dissemination Channel.

    PubMed

    Kroenlein, K; Muzny, C D; Kazakov, A; Diky, V V; Chirico, R D; Frenkel, M; Sloan, E D

    2010-01-01

    To facilitate advances in application of technologies pertaining to gas hydrates, a freely available data resource containing experimentally derived information about those materials was developed. This work was performed by the Thermodynamic Research Center (TRC) paralleling a highly successful database of thermodynamic and transport properties of molecular pure compounds and their mixtures. Population of the gas-hydrates database required development of guided data capture (GDC) software designed to convert experimental data and metadata into a well organized electronic format, as well as a relational database schema to accommodate all types of numerical and metadata within the scope of the project. To guarantee utility for the broad gas hydrate research community, TRC worked closely with the Committee on Data for Science and Technology (CODATA) task group for Data on Natural Gas Hydrates, an international data sharing effort, in developing a gas hydrate markup language (GHML). The fruits of these efforts are disseminated through the NIST Sandard Reference Data Program [1] as the Clathrate Hydrate Physical Property Database (SRD #156). A web-based interface for this database, as well as scientific results from the Mallik 2002 Gas Hydrate Production Research Well Program [2], is deployed at http://gashydrates.nist.gov.

  11. One Course, One Web Site--Of Course? Maybe Not!

    ERIC Educational Resources Information Center

    Cohn, Ellen R.

    2004-01-01

    Colleges and universities increasingly employ commercial Web-based course management systems (such as Blackboard and WebCT). How is it, then, that these institutions unquestioningly allocate a unique Web site to each class? Why establish one Web site for one course when other options provide so many benefits? Why isn't there a clamor for…

  12. Web Application Software for Ground Operations Planning Database (GOPDb) Management

    NASA Technical Reports Server (NTRS)

    Lanham, Clifton; Kallner, Shawn; Gernand, Jeffrey

    2013-01-01

    A Web application facilitates collaborative development of the ground operations planning document. This will reduce costs and development time for new programs by incorporating the data governance, access control, and revision tracking of the ground operations planning data. Ground Operations Planning requires the creation and maintenance of detailed timelines and documentation. The GOPDb Web application was created using state-of-the-art Web 2.0 technologies, and was deployed as SaaS (Software as a Service), with an emphasis on data governance and security needs. Application access is managed using two-factor authentication, with data write permissions tied to user roles and responsibilities. Multiple instances of the application can be deployed on a Web server to meet the robust needs for multiple, future programs with minimal additional cost. This innovation features high availability and scalability, with no additional software that needs to be bought or installed. For data governance and security (data quality, management, business process management, and risk management for data handling), the software uses NAMS. No local copy/cloning of data is permitted. Data change log/tracking is addressed, as well as collaboration, work flow, and process standardization. The software provides on-line documentation and detailed Web-based help. There are multiple ways that this software can be deployed on a Web server to meet ground operations planning needs for future programs. The software could be used to support commercial crew ground operations planning, as well as commercial payload/satellite ground operations planning. The application source code and database schema are owned by NASA.

  13. Face retrieval in video sequences using Web images database

    NASA Astrophysics Data System (ADS)

    Leo, M.; Battisti, F.; Carli, M.; Neri, A.

    2015-03-01

    Face processing techniques for automatic recognition in broadcast video attract the research interest because of its value in applications, such as video indexing, retrieval, and summarization. In multimedia press review, the automatic annotation of broadcasting news programs is a challenging task because people can appear with large appearance variations such as hair styles, illumination conditions and poses that make the comparison between similar faces more difficult. In this paper a technique for automatic face identification in TV broadcasting programs based on a gallery of faces downloaded from Web is proposed. The approach is based on a joint use of Scale Invariant Feature Transform descriptor and Eigenfaces-based algorithms and it has been tested on video sequences using a database of images acquired starting from a web search. Experimental results show that the joint use of these two approaches improves the recognition rate in case of use Standard Definition (SD) and High Definition (HD) standards.

  14. CEOS database of worldwide calibration facilities and validation test sites

    NASA Astrophysics Data System (ADS)

    Butler, James J.; Wanchoo, Lalit; Le, Truong

    2001-02-01

    12 Since 1995, the CEOS Calibration/Validation (Cal/Val) Database has provided the international Earth remote sensing science community with a) a central repository for information on current and planned Calibration/Validation activities and b) a means to foster collaboration on common Cal/Val issues. The Cal/Val Database uses an ORACLE relation database management system to store the data and is accessed via the World Wide Web (WWW) using PERL scripts to search and query the database. The search queries are structured such that users can define any combination of fields, either through selection of valids, or by directly typing the information. All query results are displayed in the text form. The text displays are interactive allowing the user to point and click to access more detailed information. System functionality provides an on-line form of all of the three questionnaires for submitting new information and allows a user with the assigned password to edit archived information for their facility. This functionality allows users to update information, as it becomes available. In 2000, the Cal/Val database was updated through a process of additional surveying of existing and planned Cal/Val capabilities to support the NASA's Earth Science Enterprise (ESE) and other international Earth observing missions. A set of three updated questionnaires was prepared: one for calibration laboratories, one for test sites, and one for field instruments. The information requested included: a description of the facility, instruments available, instrument characteristics, types of measurements performed, programs/projects that have used the facility, etc. These questionnaires with cover letter were mailed to over 250 research groups that included CEOS members and facilities within the USA. The information collected from worldwide facilities was used to construct and update this on-line database for use not only by the CEOS members, but also the broader international Earth

  15. MedlinePlus FAQ: Listing Your Web Site

    MedlinePlus

    ... medlineplus.gov/faq/criteria.html Question: How do Web sites get listed in MedlinePlus? To use the ... authoritative resources. MedlinePlus uses quality guidelines to evaluate Web sites. We try to ensure that the information ...

  16. Web Analytics: A Picture of the Academic Library Web Site User

    ERIC Educational Resources Information Center

    Black, Elizabeth L.

    2009-01-01

    This article describes the usefulness of Web analytics for understanding the users of an academic library Web site. Using a case study, the analysis describes how Web analytics can answer questions about Web site user behavior, including when visitors come, the duration of the visit, how they get there, the technology they use, and the most…

  17. Developing a perioperative educational video web site.

    PubMed

    O'Dowd Bell, Lynn

    2012-04-01

    Nurses frequently have to adjust to changes in technology, particularly in the OR, but cataloging the wealth of resources commonly used in the OR (eg, equipment, supplies, how to use them) has not kept pace. To address this, I worked with the information systems administrative coordinator at the University of Texas Medical Branch, Galveston, to design and implement a perioperative intranet site that includes videos and fact sheets about equipment and supplies and that can be accessed by all perioperative staff members. This required promoting the idea and getting stakeholder sign-on, soliciting videotapes and DVDs and screening all submissions for appropriateness, choosing and formatting applicable resources for use on the site, working with members of the information systems department to create a web site after the video library was assembled, and helping staff members use and accept the site as a valuable educational resource. This intranet web site has been available to staff members for two years, and data from a recent survey of staff members and from mandatory intranet inservice compliance programs show evidence of its effectiveness. PMID:22464619

  18. The Weakest Link: Is It Your Web Site?

    ERIC Educational Resources Information Center

    Bell, Lori; Peters, Tom

    2006-01-01

    In little more than a decade, Web sites have become integral to many digital library collections and services. Even if a Web site is not the destination point for an information resource, library users often interact with Web sites in the process of searching for and discovering online collections and services. If a user is looking to find and…

  19. 22 CFR 181.9 - Internet Web site publication.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 22 Foreign Relations 1 2013-04-01 2013-04-01 false Internet Web site publication. 181.9 Section... PUBLICATION OF INTERNATIONAL AGREEMENTS § 181.9 Internet Web site publication. The Office of the Assistant... responsible for making publicly available on the Internet Web site of the Department of State each treaty...

  20. 22 CFR 181.9 - Internet Web site publication.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 22 Foreign Relations 1 2012-04-01 2012-04-01 false Internet Web site publication. 181.9 Section... PUBLICATION OF INTERNATIONAL AGREEMENTS § 181.9 Internet Web site publication. The Office of the Assistant... responsible for making publicly available on the Internet Web site of the Department of State each treaty...

  1. 22 CFR 181.9 - Internet Web site publication.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 22 Foreign Relations 1 2011-04-01 2011-04-01 false Internet Web site publication. 181.9 Section... PUBLICATION OF INTERNATIONAL AGREEMENTS § 181.9 Internet Web site publication. The Office of the Assistant... responsible for making publicly available on the Internet Web site of the Department of State each treaty...

  2. 22 CFR 181.9 - Internet Web site publication.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 22 Foreign Relations 1 2010-04-01 2010-04-01 false Internet Web site publication. 181.9 Section... PUBLICATION OF INTERNATIONAL AGREEMENTS § 181.9 Internet Web site publication. The Office of the Assistant... responsible for making publicly available on the Internet Web site of the Department of State each treaty...

  3. 22 CFR 181.9 - Internet Web site publication.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 22 Foreign Relations 1 2014-04-01 2014-04-01 false Internet Web site publication. 181.9 Section... PUBLICATION OF INTERNATIONAL AGREEMENTS § 181.9 Internet Web site publication. The Office of the Assistant... responsible for making publicly available on the Internet Web site of the Department of State each treaty...

  4. 75 FR 75170 - APHIS User Fee Web Site

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-02

    ... Animal and Plant Health Inspection Service APHIS User Fee Web Site AGENCY: Animal and Plant Health... announces the availability of a Web site that contains information about the Agency's user fees. ADDRESSES: The Agency's user fee Web site is located at: http://www.aphis.usda.gov/userfees/index.shtml ....

  5. Characteristics of Food Industry Web Sites and "Advergames" Targeting Children

    ERIC Educational Resources Information Center

    Culp, Jennifer; Bell, Robert A.; Cassady, Diana

    2010-01-01

    Objective: To assess the content of food industry Web sites targeting children by describing strategies used to prolong their visits and foster brand loyalty; and to document health-promoting messages on these Web sites. Design: A content analysis was conducted of Web sites advertised on 2 children's networks, Cartoon Network and Nickelodeon. A…

  6. The Footprint Database and Web Services of the Herschel Space Observatory

    NASA Astrophysics Data System (ADS)

    Dobos, László; Varga-Verebélyi, Erika; Verdugo, Eva; Teyssier, David; Exter, Katrina; Valtchanov, Ivan; Budavári, Tamás; Kiss, Csaba

    2016-07-01

    Data from the Herschel Space Observatory is freely available to the public but no uniformly processed catalogue of the observations has been published so far. To date, the Herschel Science Archive does not contain the exact sky coverage (footprint) of individual observations and supports search for measurements based on bounding circles only. Drawing on previous experience in implementing footprint databases, we built the Herschel Footprint Database and Web Services for the Herschel Space Observatory to provide efficient search capabilities for typical astronomical queries. The database was designed with the following main goals in mind: (a) provide a unified data model for meta-data of all instruments and observational modes, (b) quickly find observations covering a selected object and its neighbourhood, (c) quickly find every observation in a larger area of the sky, (d) allow for finding solar system objects crossing observation fields. As a first step, we developed a unified data model of observations of all three Herschel instruments for all pointing and instrument modes. Then, using telescope pointing information and observational meta-data, we compiled a database of footprints. As opposed to methods using pixellation of the sphere, we represent sky coverage in an exact geometric form allowing for precise area calculations. For easier handling of Herschel observation footprints with rather complex shapes, two algorithms were implemented to reduce the outline. Furthermore, a new visualisation tool to plot footprints with various spherical projections was developed. Indexing of the footprints using Hierarchical Triangular Mesh makes it possible to quickly find observations based on sky coverage, time and meta-data. The database is accessible via a web site http://herschel.vo.elte.hu and also as a set of REST web service functions, which makes it readily usable from programming environments such as Python or IDL. The web service allows downloading footprint data

  7. The Footprint Database and Web Services of the Herschel Space Observatory

    NASA Astrophysics Data System (ADS)

    Dobos, László; Varga-Verebélyi, Erika; Verdugo, Eva; Teyssier, David; Exter, Katrina; Valtchanov, Ivan; Budavári, Tamás; Kiss, Csaba

    2016-10-01

    Data from the Herschel Space Observatory is freely available to the public but no uniformly processed catalogue of the observations has been published so far. To date, the Herschel Science Archive does not contain the exact sky coverage (footprint) of individual observations and supports search for measurements based on bounding circles only. Drawing on previous experience in implementing footprint databases, we built the Herschel Footprint Database and Web Services for the Herschel Space Observatory to provide efficient search capabilities for typical astronomical queries. The database was designed with the following main goals in mind: (a) provide a unified data model for meta-data of all instruments and observational modes, (b) quickly find observations covering a selected object and its neighbourhood, (c) quickly find every observation in a larger area of the sky, (d) allow for finding solar system objects crossing observation fields. As a first step, we developed a unified data model of observations of all three Herschel instruments for all pointing and instrument modes. Then, using telescope pointing information and observational meta-data, we compiled a database of footprints. As opposed to methods using pixellation of the sphere, we represent sky coverage in an exact geometric form allowing for precise area calculations. For easier handling of Herschel observation footprints with rather complex shapes, two algorithms were implemented to reduce the outline. Furthermore, a new visualisation tool to plot footprints with various spherical projections was developed. Indexing of the footprints using Hierarchical Triangular Mesh makes it possible to quickly find observations based on sky coverage, time and meta-data. The database is accessible via a web site http://herschel.vo.elte.hu and also as a set of REST web service functions, which makes it readily usable from programming environments such as Python or IDL. The web service allows downloading footprint data

  8. MAGA, a new database of gas natural emissions: a collaborative web environment for collecting data.

    NASA Astrophysics Data System (ADS)

    Cardellini, Carlo; Chiodini, Giovanni; Frigeri, Alessandro; Bagnato, Emanuela; Frondini, Francesco; Aiuppa, Alessandro

    2014-05-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, are incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various scales. A new and detailed web database (MAGA: MApping GAs emissions) has been developed, and recently improved, to collect data on carbon degassing form volcanic and non-volcanic environments. MAGA database allows researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and with the ingestion in to the database of the data from: i) a literature survey on publications on volcanic gas fluxes including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores, and ii) the revision and update of Googas database on non-volcanic emission of the Italian territory (Chiodini et al., 2008), in the framework of the Deep Earth Carbon Degassing (DECADE) research initiative of the Deep Carbon Observatory (DCO). For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of each site. In this phase data can be accessed on the network from a web interface, and data-driven web service, where software clients can request data directly from the database, are planned to be implemented shortly. This way Geographical Information Systems (GIS) and

  9. A Web-based database for pathology faculty effort reporting.

    PubMed

    Dee, Fred R; Haugen, Thomas H; Wynn, Philip A; Leaven, Timothy C; Kemp, John D; Cohen, Michael B

    2008-04-01

    To ensure appropriate mission-based budgeting and equitable distribution of funds for faculty salaries, our compensation committee developed a pathology-specific effort reporting database. Principles included the following: (1) measurement should be done by web-based databases; (2) most entry should be done by departmental administration or be relational to other databases; (3) data entry categories should be aligned with funding streams; and (4) units of effort should be equal across categories of effort (service, teaching, research). MySQL was used for all data transactions (http://dev.mysql.com/downloads), and scripts were constructed using PERL (http://www.perl.org). Data are accessed with forms that correspond to fields in the database. The committee's work resulted in a novel database using pathology value units (PVUs) as a standard quantitative measure of effort for activities in an academic pathology department. The most common calculation was to estimate the number of hours required for a specific task, divide by 2080 hours (a Medicare year) and then multiply by 100. Other methods included assigning a baseline PVU for program, laboratory, or course directorship with an increment for each student or staff in that unit. With these methods, a faculty member should acquire approximately 100 PVUs. Some outcomes include (1) plotting PVUs versus salary to identify outliers for salary correction, (2) quantifying effort in activities outside the department, (3) documenting salary expenditure for unfunded research, (4) evaluating salary equity by plotting PVUs versus salary by sex, and (5) aggregating data by category of effort for mission-based budgeting and long-term planning.

  10. Paleolimnology Web Portal: A Web Site Designed to Increase Paleolimnology Data Availability

    NASA Astrophysics Data System (ADS)

    Eakin, C. M.; Moy, C. M.; Habermann, T.; Gross, W. S.; Keltner, J. M.

    2001-12-01

    Despite widespread use of lacustrine records to interpret paleolimnologic and paleoclimatic change, there is a large gap between the data published in peer-reviewed journals and those submitted for archive and available to other researchers online. A primary goal of the World Data Center (WDC) for paleoclimatology and the International Geosphere-Biosphere Programme (IGBP) - Past Global Changes (PAGES) core programme is to have full and open sharing of all data sets needed for global change studies. To help improve the quantity and quality of data submitted to the WDC for Paleoclimatology, we are developing online data submission and advanced interactive browse and access tools. Our poster presents a new web-site designed to make paleolimnology data more accessible by incorporating web-based data submission forms, a multi-proxy relational database, and interactive mapping tools. The WDC for Paleoclimatology is currently designing intuitive and streamlined web-based submission forms, which will allow investigators to quickly submit their data and metadata on-line. We are also importing all existing data and metadata in our archives into a multiproxy relational database that will allow users to quickly query and retrieve paleolimnological data, as well as display the data in various formats. Furthermore, we are implementing two Paleolimnology mapping tools that will allow users to search, display, and query data in a geographical format. The first tool, WebMapper, uses a Java applet to draw maps and display metadata. This will be supplemented by a plotting tool that will provide basic plotting functions to allow users to examine data before downloading them. The second mapping tool, ArcIMS, allows users to overlay paleoclimatic data with various GIS data sets in addition to providing basic spatial analysis functions. We believe that these new web-based features will encourage more extensive data sharing and submission, making paleolimnological data more available and

  11. A design method for an intuitive web site

    SciTech Connect

    Quinniey, M.L.; Diegert, K.V.; Baca, B.G.; Forsythe, J.C.; Grose, E.

    1999-11-03

    The paper describes a methodology for designing a web site for human factor engineers that is applicable for designing a web site for a group of people. Many web pages on the World Wide Web are not organized in a format that allows a user to efficiently find information. Often the information and hypertext links on web pages are not organized into intuitive groups. Intuition implies that a person is able to use their knowledge of a paradigm to solve a problem. Intuitive groups are categories that allow web page users to find information by using their intuition or mental models of categories. In order to improve the human factors engineers efficiency for finding information on the World Wide Web, research was performed to develop a web site that serves as a tool for finding information effectively. The paper describes a methodology for designing a web site for a group of people who perform similar task in an organization.

  12. Building a Library Web Site on the Pillars of Web 2.0

    ERIC Educational Resources Information Center

    Coombs, Karen A.

    2007-01-01

    In this article, the author discusses a project they undertook to reshape the libraries' Web services of the University of Houston site. The site had been in a state of flux and it needed a new structure for both managing and organizing it. She realized the staff was looking for a Web site that was more "Web 2.0" in nature. Web 2.0 is often…

  13. Digital Discernment: An E-Commerce Web Site Evaluation Tool

    ERIC Educational Resources Information Center

    Sigman, Betsy Page; Boston, Brian J.

    2013-01-01

    Students entering the business workforce today may well share some responsibility for developing, revising, or evaluating their company's Web site. They may lack the experience, however, to critique their employer's Web presence effectively. The purpose of developing Digital Discernment, an e-commerce Web site evaluation tool, was to prepare…

  14. A Group-Decision Approach for Evaluating Educational Web Sites

    ERIC Educational Resources Information Center

    Hwang, Gwo-Jen; Huanga, Tony C. K.; Tseng, Judy C. R.

    2004-01-01

    With the advent of network technologies, many educational web sites have been developed to assist students in the learning of subjects on computer networks. However, without proper aid, students may have difficulty in selecting appropriate web sites, that are of benefit to them; hence, studying, evaluating and recommending educational web sites…

  15. Students as Web Site Authors: Effects on Motivation and Achievement

    ERIC Educational Resources Information Center

    Jones, Brett D.

    2003-01-01

    This study examined the effects of a Web site design project on students' motivation and achievement. Tenth-grade biology students worked together in teams on an ecology project that required them to locate relevant information on the Internet, decide which information should be included on their Web site, organize the information into Web pages,…

  16. Evaluating Web Sites Featuring Primary Sources on United States History

    ERIC Educational Resources Information Center

    Congleton, Robert J.

    2005-01-01

    Most library Web sites offer lists of recommended Web sites for primary sources with only cursory summaries of the sites. While many of the resources listed are outstanding, too many are dubious in quality, often referring to dead URLs or sites containing no information on their sponsor, source of material, or other information needed to evaluate…

  17. The Library Web: Case Studies in Web Site Creation and Implementation.

    ERIC Educational Resources Information Center

    Still, Julie M., Ed.

    This book presents 19 case studies in library web site creation and implementation. The book begins with an introduction--"Introduction: Step into My Parlor" (Julie M. Still)--and is divided into three sections. The first section, Academic Library Web Sites, contains six case studies: "U-SEARCH: The University of Saskatchewan Library Web" (David…

  18. Beyond Description: Converting Web Site Usage Statistics into Concrete Site Improvement Ideas

    ERIC Educational Resources Information Center

    Arendt, Julie; Wagner, Cassie

    2010-01-01

    Web site usage statistics are a widely used tool for Web site development, but libraries are still learning how to use them successfully. This case study summarizes how Morris Library at Southern Illinois University Carbondale implemented Google Analytics on its Web site and used the reports to inform a site redesign. As the main campus library at…

  19. In Brief: Red tide Web site

    NASA Astrophysics Data System (ADS)

    Showstack, Randy; Kumar, Mohi

    2008-06-01

    The U.S. National Oceanic and Atmospheric Administration has established the NOAA New England Red Tide Information Center to help people understand the significant red tides that are predicted to form there later this spring. The site (http://www.oceanservice.noaa.gov/redtide) will provide a summary of the current red tide situation and its potential harmful impacts on humans and animals and will serve as a central repository of information. The site also will have direct links to news releases, changes to relevant federal fishing regulations, links to closures of shellfish waters, and links to state agency Web sites with localized information. In addition, the site will have information about NOAA's scientific response effort as well as information from several other sources including NOAA's major response partner, the Woods Hole Oceanographic Institution (WHOI). On 24 April, WHOI scientists, using forecast models developed with NOAA funding support, predicted ``that excess winter precipitation has set the stage for a harmful algal bloom similar to the historic red tide of 2005.'' That bloom shut down shellfish beds from the Bay of Fundy to Martha's Vineyard for several months.

  20. Web-focused campaign. Revitalized Web site helps ease advertising costs.

    PubMed

    2007-01-01

    After a successful branding campaign, Saint Thomas Health Services in Nashville has launched a recruiting campaign that emphasizes a new careers Web site. Smaller newspaper ads now lead folks to the Web. Information there includes testimonials. PMID:17821933

  1. Facilitating Collaboration, Knowledge Construction and Communication with Web-Enabled Databases.

    ERIC Educational Resources Information Center

    McNeil, Sara G.; Robin, Bernard R.

    This paper presents an overview of World Wide Web-enabled databases that dynamically generate Web materials and focuses on the use of this technology to support collaboration, knowledge construction, and communication. Database applications have been used in classrooms to support learning activities for over a decade, but, although business and…

  2. A Tutorial in Creating Web-Enabled Databases with Inmagic DB/TextWorks through ODBC.

    ERIC Educational Resources Information Center

    Breeding, Marshall

    2000-01-01

    Explains how to create Web-enabled databases. Highlights include Inmagic's DB/Text WebPublisher product called DB/TextWorks; ODBC (Open Database Connectivity) drivers; Perl programming language; HTML coding; Structured Query Language (SQL); Common Gateway Interface (CGI) programming; and examples of HTML pages and Perl scripts. (LRW)

  3. Towards the Interoperability of Web, Database, and Mass Storage Technologies for Petabyte Archives

    NASA Technical Reports Server (NTRS)

    Moore, Reagan; Marciano, Richard; Wan, Michael; Sherwin, Tom; Frost, Richard

    1996-01-01

    At the San Diego Supercomputer Center, a massive data analysis system (MDAS) is being developed to support data-intensive applications that manipulate terabyte sized data sets. The objective is to support scientific application access to data whether it is located at a Web site, stored as an object in a database, and/or storage in an archival storage system. We are developing a suite of demonstration programs which illustrate how Web, database (DBMS), and archival storage (mass storage) technologies can be integrated. An application presentation interface is being designed that integrates data access to all of these sources. We have developed a data movement interface between the Illustra object-relational database and the NSL UniTree archival storage system running in a production mode at the San Diego Supercomputer Center. With this interface, an Illustra client can transparently access data on UniTree under the control of the Illustr DBMS server. The current implementation is based on the creation of a new DBMS storage manager class, and a set of library functions that allow the manipulation and migration of data stored as Illustra 'large objects'. We have extended this interface to allow a Web client application to control data movement between its local disk, the Web server, the DBMS Illustra server, and the UniTree mass storage environment. This paper describes some of the current approaches successfully integrating these technologies. This framework is measured against a representative sample of environmental data extracted from the San Diego Ba Environmental Data Repository. Practical lessons are drawn and critical research areas are highlighted.

  4. Surveying the Commons: Current Implementation of Information Commons Web sites

    ERIC Educational Resources Information Center

    Leeder, Christopher

    2009-01-01

    This study assessed the content of 72 academic library Information Commons (IC) Web sites using content analysis, quantitative assessment and qualitative surveys of site administrators to analyze current implementation by the academic library community. Results show that IC Web sites vary widely in content, design and functionality, with few…

  5. 21 CFR 1304.45 - Internet Web site disclosure requirements.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 9 2012-04-01 2012-04-01 false Internet Web site disclosure requirements. 1304.45... OF REGISTRANTS Online Pharmacies § 1304.45 Internet Web site disclosure requirements. (a) Each online... the following information on the homepage of each Internet site it operates, or on a page...

  6. 21 CFR 1304.45 - Internet Web site disclosure requirements.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 9 2013-04-01 2013-04-01 false Internet Web site disclosure requirements. 1304.45... OF REGISTRANTS Online Pharmacies § 1304.45 Internet Web site disclosure requirements. (a) Each online... the following information on the homepage of each Internet site it operates, or on a page...

  7. 21 CFR 1304.45 - Internet Web site disclosure requirements.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 9 2010-04-01 2010-04-01 false Internet Web site disclosure requirements. 1304.45... OF REGISTRANTS Online Pharmacies § 1304.45 Internet Web site disclosure requirements. (a) Each online... the following information on the homepage of each Internet site it operates, or on a page...

  8. 21 CFR 1304.45 - Internet Web site disclosure requirements.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 9 2014-04-01 2014-04-01 false Internet Web site disclosure requirements. 1304.45... OF REGISTRANTS Online Pharmacies § 1304.45 Internet Web site disclosure requirements. (a) Each online... the following information on the homepage of each Internet site it operates, or on a page...

  9. 21 CFR 1304.45 - Internet Web site disclosure requirements.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 9 2011-04-01 2011-04-01 false Internet Web site disclosure requirements. 1304.45... OF REGISTRANTS Online Pharmacies § 1304.45 Internet Web site disclosure requirements. (a) Each online... the following information on the homepage of each Internet site it operates, or on a page...

  10. The Effectiveness of Commercial Internet Web Sites: A User's Perspective.

    ERIC Educational Resources Information Center

    Bell, Hudson; Tang, Nelson K. H.

    1998-01-01

    A user survey of 60 company Web sites (electronic commerce, entertainment and leisure, financial and banking services, information services, retailing and travel, and tourism) determined that 30% had facilities for conducting online transactions and only 7% charged for site access. Overall, Web sites were rated high in ease of access, content, and…

  11. Simple Enough--Even for Web Virgins: Lisa Mitten's Access to Native American Web Sites. Web Site Review Essay.

    ERIC Educational Resources Information Center

    Belgarde, Mary Jiron

    1998-01-01

    A mixed-blood Mohawk urban Indian and university librarian, Lisa Mitten provides access to Web sites with solid information about American Indians. Links are provided to 10 categories--Native nations, Native organizations, Indian education, Native media, powwows and festivals, Indian music, Native arts, Native businesses, and Indian-oriented home…

  12. Comparison of Savannah River Site`s meteorological databases

    SciTech Connect

    Weber, A.H.

    1993-07-01

    A five-year meteorological database from the 61-meter, H-Area tower for the period 1987--1991 was compared to an earlier database for the period 1982--1986. The amount of invalid data for the newer 87--91 database was one third that for the earlier database. The data recovery percentage for the last four years of the 87-91 database was well above 90%. Considerable effort was necessary to fill in for missing data periods for the newer database for the H-Area tower. Therefore, additional databases that have been prepared for the remaining SRS meteorological towers have had missing and erroneous data flagged, but not replaced. The F-Area tower`s database was used for cross-comparison purposes because of its proximity to H Area. The primary purpose of this report is to compare the H-Tower databases for 82-86 and 87-91. Statistical methods enable the use of probability statements to be made concerning the hypothesis of no differences between the distributions of the two time periods, assuming each database is a random sample from its respective distribution. This assumption is required for the statistical tests to be valid. A number of statistical comparisons can be made between the two data sets, even though the 82-86 database exist only as distributions of frequency and mean speed.

  13. Federated Web-accessible Clinical Data Management within an Extensible NeuroImaging Database

    PubMed Central

    Keator, David B.; Wei, Dingying; Fennema-Notestine, Christine; Pease, Karen R.; Bockholt, Jeremy; Grethe, Jeffrey S.

    2010-01-01

    Managing vast datasets collected throughout multiple clinical imaging communities has become critical with the ever increasing and diverse nature of datasets. Development of data management infrastructure is further complicated by technical and experimental advances that drive modifications to existing protocols and acquisition of new types of research data to be incorporated into existing data management systems. In this paper, an extensible data management system for clinical neuroimaging studies is introduced: The Human Clinical Imaging Database (HID) and Toolkit. The database schema is constructed to support the storage of new data types without changes to the underlying schema. The complex infrastructure allows management of experiment data, such as image protocol and behavioral task parameters, as well as subject-specific data, including demographics, clinical assessments, and behavioral task performance metrics. Of significant interest, embedded clinical data entry and management tools enhance both consistency of data reporting and automatic entry of data into the database. The Clinical Assessment Layout Manager (CALM) allows users to create on-line data entry forms for use within and across sites, through which data is pulled into the underlying database via the generic clinical assessment management engine (GAME). Importantly, the system is designed to operate in a distributed environment, serving both human users and client applications in a service-oriented manner. Querying capabilities use a built-in multi-database parallel query builder/result combiner, allowing web-accessible queries within and across multiple federated databases. The system along with its documentation is open-source and available from the Neuroimaging Informatics Tools and Resource Clearinghouse (NITRC) site. PMID:20567938

  14. Usability Testing for e-Resource Discovery: How Students Find and Choose e-Resources Using Library Web Sites

    ERIC Educational Resources Information Center

    Fry, Amy; Rich, Linda

    2011-01-01

    In early 2010, library staff at Bowling Green State University (BGSU) in Ohio designed and conducted a usability study of key parts of the library web site, focusing on the web pages generated by the library's electronic resources management system (ERM) that list and describe the library's databases. The goal was to discover how users find and…

  15. The Web-Database Connection Tools for Sharing Information on the Campus Intranet.

    ERIC Educational Resources Information Center

    Thibeault, Nancy E.

    This paper evaluates four tools for creating World Wide Web pages that interface with Microsoft Access databases: DB Gateway, Internet Database Assistant (IDBA), Microsoft Internet Database Connector (IDC), and Cold Fusion. The system requirements and features of each tool are discussed. A sample application, "The Virtual Help Desk" demonstrates…

  16. Collection Fusion Using Bayesian Estimation of a Linear Regression Model in Image Databases on the Web.

    ERIC Educational Resources Information Center

    Kim, Deok-Hwan; Chung, Chin-Wan

    2003-01-01

    Discusses the collection fusion problem of image databases, concerned with retrieving relevant images by content based retrieval from image databases distributed on the Web. Focuses on a metaserver which selects image databases supporting similarity measures and proposes a new algorithm which exploits a probabilistic technique using Bayesian…

  17. Web-based flood database for Colorado, water years 1867 through 2011

    USGS Publications Warehouse

    Kohn, Michael S.; Jarrett, Robert D.; Krammes, Gary S.; Mommandi, Amanullah

    2013-01-01

    In order to provide a centralized repository of flood information for the State of Colorado, the U.S. Geological Survey, in cooperation with the Colorado Department of Transportation, created a Web-based geodatabase for flood information from water years 1867 through 2011 and data for paleofloods occurring in the past 5,000 to 10,000 years. The geodatabase was created using the Environmental Systems Research Institute ArcGIS JavaScript Application Programing Interface 3.2. The database can be accessed at http://cwscpublic2.cr.usgs.gov/projects/coflood/COFloodMap.html. Data on 6,767 flood events at 1,597 individual sites throughout Colorado were compiled to generate the flood database. The data sources of flood information are indirect discharge measurements that were stored in U.S. Geological Survey offices (water years 1867–2011), flood data from indirect discharge measurements referenced in U.S. Geological Survey reports (water years 1884–2011), paleoflood studies from six peer-reviewed journal articles (data on events occurring in the past 5,000 to 10,000 years), and the U.S. Geological Survey National Water Information System peak-discharge database (water years 1883–2010). A number of tests were performed on the flood database to ensure the quality of the data. The Web interface was programmed using the Environmental Systems Research Institute ArcGIS JavaScript Application Programing Interface 3.2, which allows for display, query, georeference, and export of the data in the flood database. The data fields in the flood database used to search and filter the database include hydrologic unit code, U.S. Geological Survey station number, site name, county, drainage area, elevation, data source, date of flood, peak discharge, and field method used to determine discharge. Additional data fields can be viewed and exported, but the data fields described above are the only ones that can be used for queries.

  18. World Wide Web platform-independent access to biomedical text/image databases

    NASA Astrophysics Data System (ADS)

    Long, L. Rodney; Goh, Gin-Hua; Neve, Leif; Thoma, George R.

    1998-07-01

    The biomedical digital library of the future is expected to provide access to stores of biomedical database information containing text and images. Developing efficient methods for accessing such databases is a research effort at the Lister Hill National Center for Biomedical Communications of the National Library of Medicine. In this paper we examine issues in providing access to databases across the Web and describe a tool we have developed: the Web-based Medical Information Retrieval System (WebMIRS). We address a number of critical issues, including preservation of data integrity, efficient database design, access to documentation, quality of query and results interfaces, capability to export results to other software, and exploitation of multimedia data. WebMIRS is implemented as a Java applet that allows database access to text and to associated image data, without requiring any user software beyond a standard Web browser. The applet implementation allows WebMIRS to run on any hardware platform (such as PCs, the Macintosh, or Unix machines) which supports a Java-enabled Web browser, such as Netscape or Internet Explorer. WebMIRS is being tested on text/x-ray image databases created from the National Health and Nutrition Examination Surveys (NHANES) data collected by the National Center for Health Statistics.

  19. A Strategic Planning Approach to Web Site Management.

    ERIC Educational Resources Information Center

    Clyde, Laurel A.

    2000-01-01

    Using her own Web site as an example, the author discusses issues and tasks associated with creating and maintaining a professional Web site, within the context of a strategic planning approach. The stages of the process are outlined, including identification of user needs; selection and evaluation of information; organization of information;…

  20. Academic Library Web Sites and Distance Education: A Content Analysis

    ERIC Educational Resources Information Center

    Jurkowski, Odin L.

    2004-01-01

    This study focuses on college and university library services provided to distance education students and a content analysis of library Web sites. The Web sites chosen were categorized by the amount of distance education the institution offered to students. Results indicated that the size of the institution had the strongest correlation to library…

  1. 12 CFR 4.4 - Washington office and web site.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... Supervision Department). The Washington office is located at 250 E Street, SW., Washington, DC 20219. The OCC... 12 Banks and Banking 1 2013-01-01 2013-01-01 false Washington office and web site. 4.4 Section 4.4... EXAMINERS Organization and Functions § 4.4 Washington office and web site. The Washington office of the...

  2. 12 CFR 4.4 - Washington office and web site.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... Supervision Department). The Washington office is located at 250 E Street, SW., Washington, DC 20219. The OCC... 12 Banks and Banking 1 2014-01-01 2014-01-01 false Washington office and web site. 4.4 Section 4.4... EXAMINERS Organization and Functions § 4.4 Washington office and web site. The Washington office of the...

  3. Examining Search Functions of EAD Finding Aids Web Sites

    ERIC Educational Resources Information Center

    Zhou, Xiaomu

    2006-01-01

    This article examined the search functions for all individual EAD Web sites listed on the Library of Congress Web site in 2003. In particular, the type of search engine, search modes, options for searching, search results display, search feedback, and other features of the search systems were studied. The data analysis suggests that there have…

  4. Web Sites for Young Children: Gateway to Online Social Networking?

    ERIC Educational Resources Information Center

    Bauman, Sheri; Tatum, Tanisha

    2009-01-01

    Traffic on Web sites for young children (ages 3-12) has increased exponentially in recent years. Advocates proclaim that they are safe introductions to the Internet and online social networking and teach essential 21st-century skills. Critics note developmental concerns. In this article, we provide basic information about Web sites for young…

  5. Why Your Music Program Needs a Web Site

    ERIC Educational Resources Information Center

    Marowitz, David R.

    2006-01-01

    With technological advancements abounding, music educators should take advantage of technology to enhance their programs and streamline their operation. This article describes why a music program needs a Web site. Web sites for music programs and performing groups offer significant benefits. These benefits are: (1) better communication and…

  6. Designing Search: Effective Search Interfaces for Academic Library Web Sites

    ERIC Educational Resources Information Center

    Teague-Rector, Susan; Ghaphery, Jimmy

    2008-01-01

    Academic libraries customize, support, and provide access to myriad information systems, each with complex graphical user interfaces. The number of possible information entry points on an academic library Web site is both daunting to the end-user and consistently challenging to library Web site designers. Faced with the challenges inherent in…

  7. Food marketing on popular children's web sites: a content analysis.

    PubMed

    Alvy, Lisa M; Calvert, Sandra L

    2008-04-01

    In 2006 the Institute of Medicine (IOM) concluded that food marketing was a contributor to childhood obesity in the United States. One recommendation of the IOM committee was for research on newer marketing venues, such as Internet Web sites. The purpose of this cross-sectional study was to answer the IOM's call by examining food marketing on popular children's Web sites. Ten Web sites were selected based on market research conducted by KidSay, which identified favorite sites of children aged 8 to 11 years during February 2005. Using a standardized coding form, these sites were examined page by page for the existence, type, and features of food marketing. Web sites were compared using chi2 analyses. Although food marketing was not pervasive on the majority of the sites, seven of the 10 Web sites contained food marketing. The products marketed were primarily candy, cereal, quick serve restaurants, and snacks. Candystand.com, a food product site, contained a significantly greater amount of food marketing than the other popular children's Web sites. Because the foods marketed to children are not consistent with a healthful diet, nutrition professionals should consider joining advocacy groups to pressure industry to reduce online food marketing directed at youth.

  8. The Availability of Faculty Publication Databases from Library Web Pages

    ERIC Educational Resources Information Center

    Blummer, Barbara A.

    2007-01-01

    Faculty publication databases or author bibliographies offer libraries an opportunity to provide services to users. Initially, these databases remained initiatives of special libraries in the health-sciences fields. Librarians used the publication information derived from these databases to compile lists for annual reports. However, the advent of…

  9. A Web-Based Database for Nurse Led Outreach Teams (NLOT) in Toronto.

    PubMed

    Li, Shirley; Kuo, Mu-Hsing; Ryan, David

    2016-01-01

    A web-based system can provide access to real-time data and information. Healthcare is moving towards digitizing patients' medical information and securely exchanging it through web-based systems. In one of Ontario's health regions, Nurse Led Outreach Teams (NLOT) provide emergency mobile nursing services to help reduce unnecessary transfers from long-term care homes to emergency departments. Currently the NLOT team uses a Microsoft Access database to keep track of the health information on the residents that they serve. The Access database lacks scalability, portability, and interoperability. The objective of this study is the development of a web-based database using Oracle Application Express that is easily accessible from mobile devices. The web-based database will allow NLOT nurses to enter and access resident information anytime and from anywhere. PMID:27577379

  10. Mining a Web Citation Database for Author Co-Citation Analysis.

    ERIC Educational Resources Information Center

    He, Yulan; Hui, Siu Cheung

    2002-01-01

    Proposes a mining process to automate author co-citation analysis based on the Web Citation Database, a data warehouse for storing citation indices of Web publications. Describes the use of agglomerative hierarchical clustering for author clustering and multidimensional scaling for displaying author cluster maps, and explains PubSearch, a…

  11. Cognitive Style and On-Line Database Search Experience as Predictors of Web Search Performance.

    ERIC Educational Resources Information Center

    Palmquist, Ruth A.; Kim, Kyung-Sun

    2000-01-01

    Describes a study that investigated the effects of cognitive style (field dependent and field independent) and online database search experience (novice and experienced) on undergraduate World Wide Web search performance. Considers user factors to predict search efficiency and discusses implications for Web interface design and user training…

  12. Improving Web Searches: Case Study of Quit-Smoking Web Sites for Teenagers

    PubMed Central

    Skinner, Harvey

    2003-01-01

    Background The Web has become an important and influential source of health information. With the vast number of Web sites on the Internet, users often resort to popular search sites when searching for information. However, little is known about the characteristics of Web sites returned by simple Web searches for information about smoking cessation for teenagers. Objective To determine the characteristics of Web sites retrieved by search engines about smoking cessation for teenagers and how information quality correlates with the search ranking. Methods The top 30 sites returned by 4 popular search sites in response to the search terms "teen quit smoking" were examined. The information relevance and quality characteristics of these sites were evaluated by 2 raters. Objective site characteristics were obtained using a page-analysis Web site. Results Only 14 of the 30 Web sites are of direct relevance to smoking cessation for teenagers. The readability of about two-thirds of the 14 sites is below an eighth-grade school level and they ranked significantly higher (Kendall rank correlation, tau = -0.39, P= .05) in search-site results than sites with readability above or equal to that grade level. Sites that ranked higher were significantly associated with the presence of e-mail address for contact (tau = -0.46, P= .01), annotated hyperlinks to external sites (tau = -0.39, P= .04), and the presence of meta description tag (tau = -0.48, P= .002). The median link density (number of external sites that have a link to that site) of the Web pages was 6 and the maximum was 735. A higher link density was significantly associated with a higher rank (tau = -0.58, P= .02). Conclusions Using simple search terms on popular search sites to look for information on smoking cessation for teenagers resulted in less than half of the sites being of direct relevance. To improve search efficiency, users could supplement results obtained from simple Web searches with human-maintained Web

  13. Creation of geographic information database of subsatellite calibration test site

    NASA Astrophysics Data System (ADS)

    Zyelyk, Ya. I.; Semeniv, O. V.

    2014-12-01

    The prototype of geographic information database (DB) of the sub-satellite calibration test site has been created, to which user can be accessed from the free open-source geographic information system Quantum GIS (QGIS) environment. QGIS is used as an integrator of all data and applications and visualizer of the satellite imagery and vector layers of test sites in the cartographic interface. Conversion of the database from the local representation in the MS Access to the server representation in the PostgreSQL environment has been performed. Dynamic application to QGIS for user interaction from QGIS environment with the object-relational database and to display information from the database has been created. Functional-algorithmic part of these application and the interface for user interaction with the database has been developed.

  14. Full-Featured Geophysical Database Interface Launchable From a Web Browser

    NASA Astrophysics Data System (ADS)

    Haxby, W.; Carbotte, S.; Ryan, W. B.; O'Hara, S.

    2002-12-01

    In recent years, the volume of geophysical data that is accessible over the world-wide web has increased dramatically. This trend promises to continue, and accelerate, as new data are collected, and as existing data are incorporated into new databases. However, while these data are available in the technical sense, they are often only accessible through web sites that suffer from one or more of the following limitations: difficult and tedious to constrain searches; difficult or impossible to download large blocks of data; or impossible to evaluate data quality prior to downloading. Once downloaded, further analysis of the data may require specialized software. These are issues that database interfaces must address in order to make data truly accessible. MapApp, a Java(TM) applet (also a downloadable application), is a prototype geographical database browser/interface that demonstrates capabilities that future database interfaces must incorporate. Geographic searches are quickly accomplished through mouse clicks on a map. Database modules are initialized by loading data blocks onto the client, which may then be analyzed interactively without waiting for time-consuming server requests to be processed. Data displayed in tables and X-Y graphs are keyed to map locations, so that, for example, selecting a table entry automatically highlights its associated map symbol, and vice-versa. Data products, such as maps, graphs, grids and tables may be saved in a variety of formats. We will demonstrate recent enhancements to MapApp: the Ridge Petrology Database interface, and a prototype multi-channel seismic interface. With the Ridge PetDB module, tables listing stations, compiled sample chemistry and individual chemical analyses are automatically updated when the map is modified or when the user modifies the search parameters (e.g., rock type, chemical group). The data tables may then be saved to a file, or copied to the system clipboard and pasted into an application such as

  15. 16 CFR 305.6 - Duty to provide labels on Web sites.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... accessible Web site in a manner that allows catalog sellers to hyperlink to the label or download it for use in Web sites or paper catalogs. The label for each specific model must remain on the Web site for...

  16. Predicting Audience Demographics of Web Sites Using Local Cues

    ERIC Educational Resources Information Center

    Kim, Iljoo

    2011-01-01

    The size and dynamism of the Web poses challenges for all its stakeholders, which include producers/consumers of content, and advertisers who want to place advertisements next to relevant content. A critical piece of information for the stakeholders is the demographics of the consumers who are likely to visit a given web site. However, predicting…

  17. Characteristics of an Effective Community College Web Site

    ERIC Educational Resources Information Center

    Poock, Michael C.; Bishop, Virginia Andrews

    2006-01-01

    This study examined the characteristics of a community college Web site by using focus groups and questionnaires with currently enrolled students. Consistent with other studies, organization and content are highly valued. Unlike previous studies, however, many participants did not utilize the Web at all in their application process. This study…

  18. Developing Classroom Web Sites for 21st Century Learning

    ERIC Educational Resources Information Center

    Tingen, Jennifer; Philbeck, Lauren; Holcomb, Lori B.

    2011-01-01

    Classroom Web sites have the potential to support and enhance student learning by targeting 21st century skills, such as collaboration among teachers, students, parents, and other teachers, media literacy, and interpersonal and self-directional skills, as well as thinking and problem-solving skills. Web 2.0 tools such as blogs, vokis, and podcasts…

  19. Web Content Accessibility of Consumer Health Information Web Sites for People with Disabilities: A Cross Sectional Evaluation

    PubMed Central

    Parmanto, Bambang

    2004-01-01

    Background The World Wide Web (WWW) has become an increasingly essential resource for health information consumers. The ability to obtain accurate medical information online quickly, conveniently and privately provides health consumers with the opportunity to make informed decisions and participate actively in their personal care. Little is known, however, about whether the content of this online health information is equally accessible to people with disabilities who must rely on special devices or technologies to process online information due to their visual, hearing, mobility, or cognitive limitations. Objective To construct a framework for an automated Web accessibility evaluation; to evaluate the state of accessibility of consumer health information Web sites; and to investigate the possible relationships between accessibility and other features of the Web sites, including function, popularity and importance. Methods We carried out a cross-sectional study of the state of accessibility of health information Web sites to people with disabilities. We selected 108 consumer health information Web sites from the directory service of a Web search engine. A measurement framework was constructed to automatically measure the level of Web Accessibility Barriers (WAB) of Web sites following Web accessibility specifications. We investigated whether there was a difference between WAB scores across various functional categories of the Web sites, and also evaluated the correlation between the WAB and Alexa traffic rank and Google Page Rank of the Web sites. Results We found that none of the Web sites we looked at are completely accessible to people with disabilities, i.e., there were no sites that had no violation of Web accessibility rules. However, governmental and educational health information Web sites do exhibit better Web accessibility than the other categories of Web sites (P < 0.001). We also found that the correlation between the WAB score and the popularity of a

  20. The development of a new database of gas emissions: MAGA, a collaborative web environment for collecting data

    NASA Astrophysics Data System (ADS)

    Cardellini, C.; Chiodini, G.; Frigeri, A.; Bagnato, E.; Aiuppa, A.; McCormick, B.

    2013-12-01

    The data on volcanic and non-volcanic gas emissions available online are, as today, incomplete and most importantly, fragmentary. Hence, there is need for common frameworks to aggregate available data, in order to characterize and quantify the phenomena at various spatial and temporal scales. Building on the Googas experience we are now extending its capability, particularly on the user side, by developing a new web environment for collecting and publishing data. We have started to create a new and detailed web database (MAGA: MApping GAs emissions) for the deep carbon degassing in the Mediterranean area. This project is part of the Deep Earth Carbon Degassing (DECADE) research initiative, lunched in 2012 by the Deep Carbon Observatory (DCO) to improve the global budget of endogenous carbon from volcanoes. MAGA database is planned to complement and integrate the work in progress within DECADE in developing CARD (Carbon Degassing) database. MAGA database will allow researchers to insert data interactively and dynamically into a spatially referred relational database management system, as well as to extract data. MAGA kicked-off with the database set up and a complete literature survey on publications on volcanic gas fluxes, by including data on active craters degassing, diffuse soil degassing and fumaroles both from dormant closed-conduit volcanoes (e.g., Vulcano, Phlegrean Fields, Santorini, Nysiros, Teide, etc.) and open-vent volcanoes (e.g., Etna, Stromboli, etc.) in the Mediterranean area and Azores. For each geo-located gas emission site, the database holds images and description of the site and of the emission type (e.g., diffuse emission, plume, fumarole, etc.), gas chemical-isotopic composition (when available), gas temperature and gases fluxes magnitude. Gas sampling, analysis and flux measurement methods are also reported together with references and contacts to researchers expert of the site. Data can be accessed on the network from a web interface or as

  1. Not Your Father's Web Site: Corporate Sites Emerge as New Content Innovators.

    ERIC Educational Resources Information Center

    O'Leary, Mick

    2002-01-01

    New economy corporate Web sites have pioneered exciting techniques-rich media, interactivity, personalization, community, and integration of much third-party content. Discusses business-to-business (B2B) Web commerce, with examples of several B2B corporate sites; portal and content elements of these sites; and corporate content outlooks. (AEF)

  2. Integrated Functional and Executional Modelling of Software Using Web-Based Databases

    NASA Technical Reports Server (NTRS)

    Kulkarni, Deepak; Marietta, Roberta

    1998-01-01

    NASA's software subsystems undergo extensive modification and updates over the operational lifetimes. It is imperative that modified software should satisfy safety goals. This report discusses the difficulties encountered in doing so and discusses a solution based on integrated modelling of software, use of automatic information extraction tools, web technology and databases. To appear in an article of Journal of Database Management.

  3. Using Web Database Tools To Facilitate the Construction of Knowledge in Online Courses.

    ERIC Educational Resources Information Center

    McNeil, Sara G.; Robin, Bernard R.

    This paper presents an overview of database tools that dynamically generate World Wide Web materials and focuses on the use of these tools to support research activities, as well as teaching and learning. Database applications have been used in classrooms to support learning activities for over a decade, but, although business and e-commerce have…

  4. Using web ontology language to integrate heterogeneous databases in the neurosciences.

    PubMed

    Lam, Hugo Y K; Marenco, Luis; Shepherd, Gordon M; Miller, Perry L; Cheung, Kei-Hoi

    2006-01-01

    Integrative neuroscience involves the integration and analysis of diverse types of neuroscience data involving many different experimental techniques. This data will increasingly be distributed across many heterogeneous databases that are web-accessible. Currently, these databases do not expose their schemas (database structures) and their contents to web applications/agents in a standardized, machine-friendly way. This limits database interoperation. To address this problem, we describe a pilot project that illustrates how neuroscience databases can be expressed using the Web Ontology Language, which is a semantically-rich ontological language, as a common data representation language to facilitate complex cross-database queries. In this pilot project, an existing tool called 'D2RQ' was used to translate two neuroscience databases (NeuronDB and CoCoDat) into OWL, and the resulting OWL ontologies were then merged. An OWL-based reasoner (Racer) was then used to provide a sophisticated query language (nRQL) to perform integrated queries across the two databases based on the merged ontology. This pilot project is one step toward exploring the use of semantic web technologies in the neurosciences.

  5. Some Favorite Aussie Children's Authors and Their Web Sites.

    ERIC Educational Resources Information Center

    Turbill, Jan

    2001-01-01

    Describes the works of eight Australian children's authors: Mem Fox, Paul Jennings; Jeannie Baker, Gary Crew, Libby Gleeson, Morris Gleitzman, Margaret Wild, and Ron Brooks. Provides links to their web sites. (PM)

  6. NREL Geothermal Policymakers' Guidebooks Web site (Fact Sheet)

    SciTech Connect

    Not Available

    2010-10-01

    This document highlights the NREL Geothermal Policymakers' Guidebooks Web site, including the five steps to effective geothermal policy development for geothermal electricity generation and geothermal heating and cooling technologies.

  7. Never Too Young to Learn: Web Site Evaluation Is Elementary!

    ERIC Educational Resources Information Center

    Franklin, Lori L.

    2006-01-01

    This article is based on a series of lessons prepared for a class of third graders who were going to research specific planets. With so many Web sites on the Internet, there is a need to be concerned about information overload for the audience. The NASA site (www.nasa.gov) is filled with lots of sites providing factual information about the…

  8. The Art Site on the World Wide Web.

    ERIC Educational Resources Information Center

    McLaughlin, Margaret L.

    1996-01-01

    Discusses the World Wide Web (WWW) as a multimedia delivery system, sources of variation in WWW art sites, pioneers on the electronic frontiers of art, and dimensions of electronic exhibition space. Discusses characteristics of early and of second-generation WWW art sites, how they compare, and evolution of the art site on the WWW. (SR)

  9. The integrated web service and genome database for agricultural plants with biotechnology information

    PubMed Central

    Kim, ChangKug; Park, DongSuk; Seol, YoungJoo; Hahn, JangHo

    2011-01-01

    The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage. PMID:21887015

  10. Creating a Web Site for Advocacy

    ERIC Educational Resources Information Center

    Erwin, Heather; Valley, Julia

    2005-01-01

    Because a mounting number of personnel, both young and old, continuously retrieve, seek out, communicate, assemble, and distribute information by way of the World Wide Web (WWW), it is vital for physical education teachers and other health/wellness promoters to tap into this source to advocate for their quality programs (Shiffett et al., 2001).…

  11. Web-Based Satellite Products Database for Meteorological and Climate Applications

    NASA Technical Reports Server (NTRS)

    Phan, Dung; Spangenberg, Douglas A.; Palikonda, Rabindra; Khaiyer, Mandana M.; Nordeen, Michele L.; Nguyen, Louis; Minnis, Patrick

    2004-01-01

    The need for ready access to satellite data and associated physical parameters such as cloud properties has been steadily growing. Air traffic management, weather forecasters, energy producers, and weather and climate researchers among others can utilize more satellite information than in the past. Thus, it is essential that such data are made available in near real-time and as archival products in an easy-access and user friendly environment. A host of Internet web sites currently provide a variety of satellite products for various applications. Each site has a unique contribution with appeal to a particular segment of the public and scientific community. This is no less true for the NASA Langley's Clouds and Radiation (NLCR) website (http://www-pm.larc.nasa.gov) that has been evolving over the past 10 years to support a variety of research projects This website was originally developed to display cloud products derived from the Geostationary Operational Environmental Satellite (GOES) over the Southern Great Plains for the Atmospheric Radiation Measurement (ARM) Program. It has evolved into a site providing a comprehensive database of near real-time and historical satellite products used for meteorological, aviation, and climate studies. To encourage the user community to take advantage of the site, this paper summarizes the various products and projects supported by the website and discusses future options for new datasets.

  12. EST databases and web tools for EST projects.

    PubMed

    Shen, Yao-Qing; O'Brien, Emmet; Koski, Liisa; Lang, B Franz; Burger, Gertraud

    2009-01-01

    This chapter outlines key considerations for constructing and implementing an EST database. Instead of showing the technological details step by step, emphasis is put on the design of an EST database suited to the specific needs of EST projects and how to choose the most suitable tools. Using TBestDB as an example, we illustrate the essential factors to be considered for database construction and the steps for data population and annotation. This process employs technologies such as PostgreSQL, Perl, and PHP to build the database and interface, and tools such as AutoFACT for data processing and annotation. We discuss these in comparison to other available technologies and tools, and explain the reasons for our choices.

  13. In-Memory Graph Databases for Web-Scale Data

    SciTech Connect

    Castellana, Vito G.; Morari, Alessandro; Weaver, Jesse R.; Tumeo, Antonino; Haglin, David J.; Villa, Oreste; Feo, John

    2015-03-01

    RDF databases have emerged as one of the most relevant way for organizing, integrating, and managing expo- nentially growing, often heterogeneous, and not rigidly structured data for a variety of scientific and commercial fields. In this paper we discuss the solutions integrated in GEMS (Graph database Engine for Multithreaded Systems), a software framework for implementing RDF databases on commodity, distributed-memory high-performance clusters. Unlike the majority of current RDF databases, GEMS has been designed from the ground up to primarily employ graph-based methods. This is reflected in all the layers of its stack. The GEMS framework is composed of: a SPARQL-to-C++ compiler, a library of data structures and related methods to access and modify them, and a custom runtime providing lightweight software multithreading, network messages aggregation and a partitioned global address space. We provide an overview of the framework, detailing its component and how they have been closely designed and customized to address issues of graph methods applied to large-scale datasets on clusters. We discuss in details the principles that enable automatic translation of the queries (expressed in SPARQL, the query language of choice for RDF databases) to graph methods, and identify differences with respect to other RDF databases.

  14. High Plains Regional Ground-water Study web site

    USGS Publications Warehouse

    Qi, Sharon L.

    2000-01-01

    Now available on the Internet is a web site for the U.S. Geological Survey's (USGS) National Water-Quality Assessment (NAWQA) Program- High Plains Regional Ground-Water Study. The purpose of the web site is to provide public access to a wide variety of information on the USGS investigation of the ground-water resources within the High Plains aquifer system. Typical pages on the web site include the following: descriptions of the High Plains NAWQA, the National NAWQA Program, the study-area setting, current and past activities, significant findings, chemical and ancillary data (which can be downloaded), listing and access to publications, links to other sites about the High Plains area, and links to other web sites studying High Plains ground-water resources. The High Plains aquifer is a regional aquifer system that underlies 174,000 square miles in parts of eight States (Colorado, Kansas, Nebraska, New Mexico, Oklahoma, South Dakota, Texas, and Wyoming). Because the study area is so large, the Internet is an ideal way to provide project data and information on a near real-time basis. The web site will be a collection of living documents where project data and information are updated as it becomes available throughout the life of the project. If you have an interest in the High Plains area, you can check this site periodically to learn how the High Plains NAWQA activities are progressing over time and access new data and publications as they become available.

  15. Content Evaluation of Textual CD-ROM and Web Databases. Database Searching Series.

    ERIC Educational Resources Information Center

    Jacso, Peter

    This book provides guidelines for evaluating a variety of database types, including abstracting and indexing, directory, full-text, and page-image databases available in online and/or CD-ROM formats. The book discusses the purpose and techniques of comparing and evaluating the most important characteristics of textual databases, such as their…

  16. Administering a Web-Based Course on Database Technology

    ERIC Educational Resources Information Center

    de Oliveira, Leonardo Rocha; Cortimiglia, Marcelo; Marques, Luis Fernando Moraes

    2003-01-01

    This article presents a managerial experience with a web-based course on data base technology for enterprise management. The course has been developed and managed by a Department of Industrial Engineering in Brazil in a Public University. Project's managerial experiences are described covering its conception stage where the Virtual Learning…

  17. The medical school Web site: medical education's newest tool.

    PubMed

    Goldenberg, D; Beyar, R

    2000-10-01

    There are few technological advancements that have had as much impact on the dissemination of information as the Internet, and especially the worldwide web. It is not surprising then that this tool is also changing the way medicine is studied, taught and practiced today. This impressive infrastructure enables us to teach and study medicine in an entirely different way. The web provides medical students and physicians with access to continuing medical education, patient education services, telemedicine, and unparalleled communication between colleagues via email. The medical school web site may be used as a dynamic newspaper or bulletin board to disseminate information internally among the faculty as well as to the outside world. It can also be the vehicle for virtual learning modules that enhance the medical school core curriculum by including lectures, exercises, tests, etc. In addition, the web allows the student access to medical literature, medical software applications and medical resource depots. To date no work has been published on the medical school web site, its construction process, and its advantages, drawbacks and future. The purpose of this article is to examine the evolution of the web as a tool for medical schools, medical students and associated physicians. We discuss the building of a web site for a medical faculty, and look to the future.

  18. An internet web site as a data collection platform for multicenter research.

    PubMed

    Avidan, Alexander; Weissman, Charles; Sprung, Charles L

    2005-02-01

    The Internet can be an effective alternative for data collection for multicenter studies. It has major advantages over the "classical" method of using paper and traditional ("snail") mail. We developed an Internet site and implemented collection of data for a multicenter study of ethical decision-making. The Web site was built with Microsoft FrontPage as the authoring tool. Database management was performed with Microsoft Access. Security issues were the major concerns for the web design. Thirty-seven European centers enrolled 4248 patients during 1.5 yr using the Internet site. The use of this Internet site for data acquisition was highly effective, and the investigators were able to use the system without training. Overall satisfaction of the investigators was high. After security issues, interactivity and user-friendly design are the main cornerstones for the success of such a system. PMID:15673884

  19. Secure web-based access to radiology: forms and databases for fast queries

    NASA Astrophysics Data System (ADS)

    McColl, Roderick W.; Lane, Thomas J.

    2002-05-01

    Currently, Web-based access to mini-PACS or similar databases commonly utilizes either JavaScript, Java applets or ActiveX controls. Many sites do not permit applets or controls or other binary objects for fear of viruses or worms sent by malicious users. In addition, the typical CGI query mechanism requires several parameters to be sent with the http GET/POST request, which may identify the patient in some way; this in unacceptable for privacy protection. Also unacceptable are pages produced by server-side scripts which can be cached by the browser, since these may also contain sensitive information. We propose a simple mechanism for access to patient information, including images, which guarantees security of information, makes it impossible to bookmark the page, or to return to the page after some defined length of time. In addition, this mechanism is simple, therefore permitting rapid access without the need to initially download an interface such as an applet or control. In addition to image display, the design of the site allows the user to view and save movies of multi-phasic data, or to construct multi-frame datasets from entire series. These capabilities make the site attractive for research purposes such as teaching file preparation.

  20. 78 FR 76187 - 30-Day Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-16

    ... Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration ACTION: Notice... . SUPPLEMENTARY INFORMATION: Title of Information Collection: Exchange Programs Alumni Web site Registration. OMB... available for public review. Abstract of proposed collection: The International Exchange Alumni Web...

  1. A Virtual Web Environment for Mars Landing Site Studies

    NASA Technical Reports Server (NTRS)

    Gulick, V. C.; Deardorff, D. G.; Briggs, G. A.

    2001-01-01

    A collection of web tools is available for both the landing site and broader Mars science communities to better utilize, visualize, and analyze Mars Global Surveyor data. These tools have grown out of a two year effort between the Center for Mars Exploration (CMEX), and the NAS data visualization group at NASA Ames Research Center (ARC), to promote interactions among the planetary community and to coordinate landing site activities. The web site will continue to evolve over the next several years as new tools and features are added to support the ongoing Mars missions.

  2. Enhanced Television Strategy Models: A Study of TV Web Sites.

    ERIC Educational Resources Information Center

    Ha, Louisa

    2002-01-01

    Compares the use of enhanced television features and television commerce features on the Web sites of cable and broadcast television networks. Shows differences in strategies and site usability; proposes three enhanced television strategy models; and discusses implications on television revenue and viewership. (Author/LRW)

  3. School Counseling Site Supervisor Training: A Web-Based Approach

    ERIC Educational Resources Information Center

    Swank, Jacqueline M.; Tyson, Lawrence

    2012-01-01

    A need exists for training school counseling site supervisors in providing clinical supervision to school counseling practicum and internship students. This article outlines a Web-based training program containing six modules to assist counselor education programs in educating school counseling site supervisors. The authors also address the…

  4. Use of an Academic Library Web Site Search Engine.

    ERIC Educational Resources Information Center

    Fagan, Jody Condit

    2002-01-01

    Describes an analysis of the search engine logs of Southern Illinois University, Carbondale's library to determine how patrons used the site search. Discusses results that showed patrons did not understand the function of the search and explains improvements that were made in the Web site and in online reference services. (Author/LRW)

  5. Web Sites that Compare Loans Gain Users, Lose Lenders

    ERIC Educational Resources Information Center

    Norton, Ingrid

    2008-01-01

    Web sites that allow borrowers to compare student loans proliferated in the wake of last year's scandals that exposed conflicts of interest in the lending industry. Now the credit crunch is shifting demand for loan-comparison sites again, providing both new challenges and opportunities. More financial-aid officers are also pointing their students…

  6. Educational Web Sites: A Classification System for Educators and Learners.

    ERIC Educational Resources Information Center

    Martindale, Trey; Cates, Ward Mitchell; Qian, Yufeng

    2003-01-01

    Describes the creation of a classification system with a common vocabulary for discussing educational Web sites, both formal and informal education, and looking for trends in exemplary sites. Categories include instructional; learning activities; content collection; links; reference; teacher resources; vicarious participation; interpersonal…

  7. When Web Sites Post Test Answers, Professors Worry

    ERIC Educational Resources Information Center

    Young, Jeffrey R.

    2008-01-01

    Several Web sites have emerged in recent years that encourage students to upload old exams to build a bank of test questions and answers that can be consulted by other students. This article reports that some professors have raised concerns about these sites, arguing that these could be used to cheat, especially if professors reuse old tests.…

  8. Teacher Participation in an Art Curriculum Web Site.

    ERIC Educational Resources Information Center

    Bridges, Barbara

    2000-01-01

    Focuses on ArtsNetMN--an art curriculum site developed by four Minnesota museums. Discusses design features on the ArtsNetMN site; collaboration as a key to ArtsNetMN's success as an online Learning Museum; the change from use of a listserv to a software product called Web Board; feedback from teachers; and implications for the classroom.…

  9. Hot Spots on the Web for Teacher Librarians: A Selection of Recommended Web Sites for TLs To Visit.

    ERIC Educational Resources Information Center

    1996

    Six papers review and recommend sites on the Web as resources for teacher librarians include: "Just Do It: A Guide to Getting Out There and Doing It Yourself" (Catherine Ryan); "A Selection of Recommended Web Sites for TLs To Visit" (Karen Bonanno); "A Selection of Recommended Web Sites for TLs To Visit" (Sandra Naude); "Internet Resources for the…

  10. Web Access to Electronic Journals and Databases in ARL Libraries

    ERIC Educational Resources Information Center

    Caudle, Dana M.; Schmitz, Cecilia M.

    2007-01-01

    Libraries are investing heavily in an increasing number of electronic journals and providing access to them through their websites. We set out to determine if ARL academic libraries offer the same options on their websites to access electronic journals and databases. Using a checklist, we evaluated the websites for the presence of A-Z lists, links…

  11. [Identifying phosphopeptide by searching a site annotated protein database].

    PubMed

    Cheng, Kai; Wang, Fangjun; Bian, Yangyang; Ye, Mingling; Zou, Hanfa

    2015-01-01

    Phosphoproteome analysis is one of the important research fields in proteomics. In shotgun proteomics, phosphopeptides could be identified directly by setting phosphorylation as variable modifications in database search. However, search space increases significantly when variable modifications are set in post-translation modifications (PTMs) analysis, which will decrease the identification sensitivity. Because setting a variable modification on a specific type of amino acid residue means all of this amino acid residues in the database might be modified, which is not consistent with actual conditions. Phosphorylation and dephosphorylation are regulated by protein kinases and phosphatases, which can only occur on particular substrates. Therefore only residues within specific sequence are potential sites which may be modified. To address this issue, we extracted the characteristic sequence from the identified phosphorylation sites and created an annotated database containing phosphorylation site information, which allowed the searching engine to set variable modifications only on the serine, threonine and tyrosine residues that were identified to be phosphorylated previously. In this database only annotated serine, threonine and tyrosine can be modified. This strategy significantly reduced the search space. The performance of this new database searching strategy was evaluated by searching different types of data with Mascot, and higher sensitivity for phosphopeptide identification was achieved with high reliability.

  12. A simple method for serving Web hypermaps with dynamic database drill-down

    PubMed Central

    Boulos, Maged N Kamel; Roudsari, Abdul V; Carson, Ewart R

    2002-01-01

    Background HealthCyberMap aims at mapping parts of health information cyberspace in novel ways to deliver a semantically superior user experience. This is achieved through "intelligent" categorisation and interactive hypermedia visualisation of health resources using metadata, clinical codes and GIS. HealthCyberMap is an ArcView 3.1 project. WebView, the Internet extension to ArcView, publishes HealthCyberMap ArcView Views as Web client-side imagemaps. The basic WebView set-up does not support any GIS database connection, and published Web maps become disconnected from the original project. A dedicated Internet map server would be the best way to serve HealthCyberMap database-driven interactive Web maps, but is an expensive and complex solution to acquire, run and maintain. This paper describes HealthCyberMap simple, low-cost method for "patching" WebView to serve hypermaps with dynamic database drill-down functionality on the Web. Results The proposed solution is currently used for publishing HealthCyberMap GIS-generated navigational information maps on the Web while maintaining their links with the underlying resource metadata base. Conclusion The authors believe their map serving approach as adopted in HealthCyberMap has been very successful, especially in cases when only map attribute data change without a corresponding effect on map appearance. It should be also possible to use the same solution to publish other interactive GIS-driven maps on the Web, e.g., maps of real world health problems. PMID:12437788

  13. Databases and web tools for cancer genomics study.

    PubMed

    Yang, Yadong; Dong, Xunong; Xie, Bingbing; Ding, Nan; Chen, Juan; Li, Yongjun; Zhang, Qian; Qu, Hongzhu; Fang, Xiangdong

    2015-02-01

    Publicly-accessible resources have promoted the advance of scientific discovery. The era of genomics and big data has brought the need for collaboration and data sharing in order to make effective use of this new knowledge. Here, we describe the web resources for cancer genomics research and rate them on the basis of the diversity of cancer types, sample size, omics data comprehensiveness, and user experience. The resources reviewed include data repository and analysis tools; and we hope such introduction will promote the awareness and facilitate the usage of these resources in the cancer research community. PMID:25707591

  14. PaleoGeo: a Web based GIS database for paleoenvironmental studies

    NASA Astrophysics Data System (ADS)

    Song, Wonsuh; Kondo, Yasuhisa; Oguchi, Takashi

    2014-05-01

    Paleoenvironmental studies cover various fields such as paleohydrology, geomorphology, paleooceanology, paleobiology, paleoclimatology, and chronology. It is difficult for an individual researcher to collect and compile enormous data regarding these fields. We have been compiling portal data and presenting them using a web-based geographical information system (Web-GIS) called PaleoGeo for the multidisciplinary project 'Replacement of Neanderthals by Modern Humans'. The aim of the project is to reconstruct the distribution of Neanderthals and modern humans in time and space in relation to past climate change. We have been collecting information from almost three thousand articles of 13 journals regarding paleoenvironmental research (i.e., Boreas, Catena, Climatic Change, Earth Surface Processes and Landforms, Geomorphology, Journal of Quaternary Science, Palaeogeography, Palaeoclimatology, and Palaeoecology, Quaternary International, Quaternary Research, Quaternary Science Reviews, The Holocene, and The Journal of Geology). The topics of the articles were classified into six themes (paleohydrology, earth surface processes and materials, paleooceanology, paleobiology, palaeoclimatology, and chronology) and 19 subthemes (hydrology, flood, fluvial, glacier, fluvial/glacier, sedimentology, soil, slope process, periglacial, peat land, eolian, sea-level, biology, vegetation, zoology, vegetation/zoology, archaeology, climate, atmosphere, and chronology). The collected data consist of the journal name, information about each paper (authors, title, volume, year, and page numbers), site location (country name, longitude, and latitude), theme, subtheme, keywords, DOI (Digital Object Identifier), and period (era). Location data are indispensable for paleoenvironmental studies. The PaleoGeo shows information with a map, which is an advantage of this database system. However, the number of the paleoenvironmental studies is growing rapidly and we have to effectively cover them as

  15. Protecting Database Centric Web Services against SQL/XPath Injection Attacks

    NASA Astrophysics Data System (ADS)

    Laranjeiro, Nuno; Vieira, Marco; Madeira, Henrique

    Web services represent a powerful interface for back-end database systems and are increasingly being used in business critical applications. However, field studies show that a large number of web services are deployed with security flaws (e.g., having SQL Injection vulnerabilities). Although several techniques for the identification of security vulnerabilities have been proposed, developing non-vulnerable web services is still a difficult task. In fact, security-related concerns are hard to apply as they involve adding complexity to already complex code. This paper proposes an approach to secure web services against SQL and XPath Injection attacks, by transparently detecting and aborting service invocations that try to take advantage of potential vulnerabilities. Our mechanism was applied to secure several web services specified by the TPC-App benchmark, showing to be 100% effective in stopping attacks, non-intrusive and very easy to use.

  16. SwingStations: a web-based client tool for the Baltic environmental database

    NASA Astrophysics Data System (ADS)

    Sokolov, Alexander; Wulff, Fredrik

    1999-08-01

    This paper describes the operation of a web-based computer program designed as a client program for the Baltic Environmental Database. This database contains a large collection of oceanographic data for the Baltic Sea from all Baltic countries, covering observations from 1900 to the present. A database server manages this database allowing user access via the Internet. To investigate the database, a web-based program (SwingStations) was developed. This program works as a client in client/server interaction with the database. It allows data to be selected using graphical user-friendly queries and to analyze the data in numerical and graphical forms. It is also possible to construct vertical profiles of statistics and time series (time-depth graph) of oceanographic parameters for a selected area of the Baltic Sea. SwingStations applet is written in Java™ using Java Foundation Classes Application Programming Interface. This interface is included in the Sun's Java™ Plug-in Virtual Machine that provides complete Java Compatible™ support for all the popular web browsers on major hardware platforms.

  17. ETDEWEB versus the World-Wide-Web: a specific database/web comparison

    SciTech Connect

    Cutler, D.

    2010-06-28

    A study was performed comparing user search results from the specialized scientific database on energy-related information, ETDEWEB, with search results from the internet search engines Google and Google Scholar. The primary objective of the study was to determine if ETDEWEB (the Energy Technology Data Exchange – World Energy Base) continues to bring the user search results that are not being found by Google and Google Scholar. As a multilateral information exchange initiative, ETDE’s member countries and partners contribute cost- and task-sharing resources to build the largest database of energy-related information in the world. As of early 2010, the ETDEWEB database has 4.3 million citations to world-wide energy literature. One of ETDEWEB’s strengths is its focused scientific content and direct access to full text for its grey literature (over 300,000 documents in PDF available for viewing from the ETDE site and over a million additional links to where the documents can be found at research organizations and major publishers globally). Google and Google Scholar are well-known for the wide breadth of the information they search, with Google bringing in news, factual and opinion-related information, and Google Scholar also emphasizing scientific content across many disciplines. The analysis compared the results of 15 energy-related queries performed on all three systems using identical words/phrases. A variety of subjects was chosen, although the topics were mostly in renewable energy areas due to broad international interest. Over 40,000 search result records from the three sources were evaluated. The study concluded that ETDEWEB is a significant resource to energy experts for discovering relevant energy information. For the 15 topics in this study, ETDEWEB was shown to bring the user unique results not shown by Google or Google Scholar 86.7% of the time. Much was learned from the study beyond just metric comparisons. Observations about the strengths of each

  18. Java Web Simulation (JWS); a web based database of kinetic models.

    PubMed

    Snoep, J L; Olivier, B G

    2002-01-01

    Software to make a database of kinetic models accessible via the internet has been developed and a core database has been set up at http://jjj.biochem.sun.ac.za/. This repository of models, available to everyone with internet access, opens a whole new way in which we can make our models public. Via the database, a user can change enzyme parameters and run time simulations or steady state analyses. The interface is user friendly and no additional software is necessary. The database currently contains 10 models, but since the generation of the program code to include new models has largely been automated the addition of new models is straightforward and people are invited to submit their models to be included in the database.

  19. Integrated Functional and Executional Modelling of Software Using Web-Based Databases

    NASA Technical Reports Server (NTRS)

    Kulkarni, Deepak; Marietta, Roberta

    1998-01-01

    NASA's software subsystems undergo extensive modification and updates over the operational lifetimes. It is imperative that modified software should satisfy safety goals. This report discusses the difficulties encountered in doing so and discusses a solution based on integrated modelling of software, use of automatic information extraction tools, web technology and databases.

  20. Facilities for exploring molecular biology databases on the Web: A comparative study

    SciTech Connect

    Markowitz, V.M.; Chen, I.M.A.; Kosky, A.S.; Szeto, E.

    1996-12-31

    We discuss criteria for evaluating and comparing the main facilities provided by molecular biology databases (MBDs) for exploring (that is, retrieving and interpreting data) on the Web. We use these criteria for examining the facilities supported by typical MBDs such as Genbank, AtDB, GSDB, GDB, and MGD (as of September 5, 1996). 19 refs.

  1. Determinants of Web Site Implementation in Small Businesses.

    ERIC Educational Resources Information Center

    Raymond, Louis

    2001-01-01

    A survey of 54 Canadian travel agencies identified various factors determining the assimilation of electronic commerce by small enterprises in the form of informational, transactional, and strategic implementation of a Web site. Results indicate informational implementation and transactional implementation are determined by the environmental…

  2. Manual and Automated Document Retrieval at the NSF Web Site

    NASA Astrophysics Data System (ADS)

    Wink, Donald J.

    1998-05-01

    Last month, I discussed the general structure of educational materials at the NSF Web site, and now we can focus on important components for the chemical education community. First among these components is the documentation that NSF provides on the history and the current status of NSF-supported education initiatives, which is the topic for this month.

  3. Optimising Web Site Designs for People with Learning Disabilities

    ERIC Educational Resources Information Center

    Williams, Peter; Hennig, Christian

    2015-01-01

    Much relevant internet-mediated information is inaccessible to people with learning disabilities because of difficulties in navigating the web. This paper reports on the methods undertaken to determine how information can be optimally presented for this cohort. Qualitative work is outlined where attributes relating to site layout affecting…

  4. 10 Web Tools to Create User-Friendly Sites

    ERIC Educational Resources Information Center

    Pretlow, Cassi

    2008-01-01

    Surprisingly, many tools exist on the web that can help sites become more inviting and easier to use. By now, many are probably familiar with the free tools offered by Flickr, del.icio.us, or YouTube for embedding images, tags, and videos on webpages. This article presents a comprehensive list of some perhaps lesser-known but equally useful tools…

  5. Hagerstown-Jefferson Township Public Library Internet Web Site.

    ERIC Educational Resources Information Center

    Albertson, Marie

    1997-01-01

    Describes the development of the Hagerstown (Indiana) public library's Web site. Highlights include writing successful grant proposals for funding; software from Microsoft; community support; free community access to the Internet from home computers as well as at the library; problems encountered; and future plans. (LRW)

  6. 12 CFR 4.4 - Washington office and web site.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 12 Banks and Banking 1 2012-01-01 2012-01-01 false Washington office and web site. 4.4 Section 4.4 Banks and Banking COMPTROLLER OF THE CURRENCY, DEPARTMENT OF THE TREASURY ORGANIZATION AND FUNCTIONS, AVAILABILITY AND RELEASE OF INFORMATION, CONTRACTING OUTREACH PROGRAM, POST-EMPLOYMENT RESTRICTIONS FOR SENIOR EXAMINERS Organization and...

  7. 75 FR 6063 - Availability of NRC Open Government Web Site

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-05

    ... follows up on a January 11, 2010 (75 FR 1418), Federal Register notice, informs the public that the... an NRC notice (75 FR 1418) soliciting public comment on the NRC's implementation of the Office of... COMMISSION Availability of NRC Open Government Web Site AGENCY: Nuclear Regulatory Commission. ACTION:...

  8. A Model Privacy Statement for Ohio Library Web Sites.

    ERIC Educational Resources Information Center

    Monaco, Michael J.

    The purpose of this research was to develop a model privacy policy statement for library World Wide Web sites. First, standards of privacy protection were identified. These standards were culled from the privacy and confidentiality policies of the American Library Association, the Federal Trade Commission's online privacy reports, the guidelines…

  9. WWW.cell Biology Education: Evolution Web Sites

    ERIC Educational Resources Information Center

    Liu, Dennis

    2005-01-01

    The debate over teaching evolution has once again reached a fever pitch in the United States. Earnest nineteenth-century clashes between scientific and religious worldviews have given way to the politically charged arguments of creation science and now intelligent design. The Web site of the National Center for Science Education (NCSE;…

  10. The Undergraduate's Companion to American Writers and Their Web Sites.

    ERIC Educational Resources Information Center

    Bracken, James K.; Hinman, Larry G.

    This guide presents a selection of the most authoritative, informative and useful Web sites for today's college and university American literature students and scholars. Nearly 300 American authors whose works are features in the most recent editions of widely used literature anthologies are included in this volume. A chronological arrangement…

  11. Creating and Maintaining Data-Driven Course Web Sites.

    ERIC Educational Resources Information Center

    Heines, Jesse M.

    This paper deals with techniques for reducing the amount of work that needs to be redone each semester when one prepares an existing course Web site for a new class. The key concept is algorithmic generation of common page elements while still allowing full control over page content via WYSIWYG tools like Microsoft FrontPage and Macromedia…

  12. Making Web Sites Work for People with Disabilities.

    ERIC Educational Resources Information Center

    Foster, Andrea L.

    2001-01-01

    Demands from students with disabilities and regulations from the federal government are prompting colleges to seek new designs in software and hardware. Many colleges are buying computer workstations and designing Web sites that meet the needs of students with disabilities. The university's attitude and organization tends to be the main stumbling…

  13. Frontier: High Performance Database Access Using Standard Web Components in a Scalable Multi-Tier Architecture

    SciTech Connect

    Kosyakov, S.; Kowalkowski, J.; Litvintsev, D.; Lueking, L.; Paterno, M.; White, S.P.; Autio, Lauri; Blumenfeld, B.; Maksimovic, P.; Mathis, M.; /Johns Hopkins U.

    2004-09-01

    A high performance system has been assembled using standard web components to deliver database information to a large number of broadly distributed clients. The CDF Experiment at Fermilab is establishing processing centers around the world imposing a high demand on their database repository. For delivering read-only data, such as calibrations, trigger information, and run conditions data, we have abstracted the interface that clients use to retrieve data objects. A middle tier is deployed that translates client requests into database specific queries and returns the data to the client as XML datagrams. The database connection management, request translation, and data encoding are accomplished in servlets running under Tomcat. Squid Proxy caching layers are deployed near the Tomcat servers, as well as close to the clients, to significantly reduce the load on the database and provide a scalable deployment model. Details the system's construction and use are presented, including its architecture, design, interfaces, administration, performance measurements, and deployment plan.

  14. Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes

    PubMed Central

    2014-01-01

    Background Alternative splicing is an important process in higher eukaryotes that allows obtaining several transcripts from one gene. A specific case of alternative splicing is mutually exclusive splicing, in which exactly one exon out of a cluster of neighbouring exons is spliced into the mature transcript. Recently, a new algorithm for the prediction of these exons has been developed based on the preconditions that the exons of the cluster have similar lengths, sequence homology, and conserved splice sites, and that they are translated in the same reading frame. Description In this contribution we introduce Kassiopeia, a database and web application for the generation, storage, and presentation of genome-wide analyses of mutually exclusive exomes. Currently, Kassiopeia provides access to the mutually exclusive exomes of twelve Drosophila species, the thale cress Arabidopsis thaliana, the flatworm Caenorhabditis elegans, and human. Mutually exclusive spliced exons (MXEs) were predicted based on gene reconstructions from Scipio. Based on the standard prediction values, with which 83.5% of the annotated MXEs of Drosophila melanogaster were reconstructed, the exomes contain surprisingly more MXEs than previously supposed and identified. The user can search Kassiopeia using BLAST or browse the genes of each species optionally adjusting the parameters used for the prediction to reveal more divergent or only very similar exon candidates. Conclusions We developed a pipeline to predict MXEs in the genomes of several model organisms and a web interface, Kassiopeia, for their visualization. For each gene Kassiopeia provides a comprehensive gene structure scheme, the sequences and predicted secondary structures of the MXEs, and, if available, further evidence for MXE candidates from cDNA/EST data, predictions of MXEs in homologous genes of closely related species, and RNA secondary structure predictions. Kassiopeia can be accessed at http

  15. ConSite: web-based prediction of regulatory elements using cross-species comparison.

    PubMed

    Sandelin, Albin; Wasserman, Wyeth W; Lenhard, Boris

    2004-07-01

    ConSite is a user-friendly, web-based tool for finding cis-regulatory elements in genomic sequences. Predictions are based on the integration of binding site prediction generated with high-quality transcription factor models and cross-species comparison filtering (phylogenetic footprinting). By incorporating evolutionary constraints, selectivity is increased by an order of magnitude as compared to single-sequence analysis. ConSite offers several unique features, including an interactive expert system for retrieving orthologous regulatory sequences. Programming modules and biological databases that form the foundation of the ConSite service are freely available to the research community. ConSite is available at http:/www.phylofoot.org/consite.

  16. Using a Web Site to Support a Seismology Course Textbook

    NASA Astrophysics Data System (ADS)

    Wysession, M. E.; Stein, S.

    2004-12-01

    We present a course in seismology that consists of a textbook with an accompanying web site (http://epscx.wustl.edu/seismology/book). The web site serves many different functions, and is of great importance as a companion to the curriculum in several different ways: (1) All of the more than 600 figures from the book are available on the web site. Geophysics is a very visually-oriented discipline, and many concepts are more easily taught with appropriate visual tools. In addition, many instructors are now using computer-based lecture programs such as PowerPoint. To aid in this, all of the figures are displayed in a common JPG format, both with and without titles. They are available to be used in a seismology course, or any kind of Earth Science course. This way, an instructor can easily grab a figure from the web site and drop it into a PowerPoint format. The figures are listed by number, but are also obtainable from menus of thumbnail sketches. If an instructor would like all of the figures, they can be obtained as large zip files, which can be unzipped after downloading. In addition, sample PowerPoint lectures using the figures as well the equations from the text will be available on the course web site. (2) Solutions to all of the homework problems are available in PDF format on the course website. Homework is a vital component of any quantitative course, but it is often a significant time commitment for instructors to derive all of the homework problems. In addition, it is much easier to select which homework problems are desired to be assigned if the solutions can be seen. The 64 pages of homework solutions are on a secure web site that requires a user ID and password that can be obtained from the authors. (3) Any errors found in the textbook are immediately posted on an "Errata" web page. Many of these errors are found by instructors who are using the curriculum (and they are given credit for finding the errors!). The text becomes an interactive process

  17. Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases.

    PubMed

    Kobayashi, Norio; Ishii, Manabu; Takahashi, Satoshi; Mochizuki, Yoshiki; Matsushima, Akihiro; Toyoda, Tetsuro

    2011-07-01

    Global cloud frameworks for bioinformatics research databases become huge and heterogeneous; solutions face various diametric challenges comprising cross-integration, retrieval, security and openness. To address this, as of March 2011 organizations including RIKEN published 192 mammalian, plant and protein life sciences databases having 8.2 million data records, integrated as Linked Open or Private Data (LOD/LPD) using SciNetS.org, the Scientists' Networking System. The huge quantity of linked data this database integration framework covers is based on the Semantic Web, where researchers collaborate by managing metadata across public and private databases in a secured data space. This outstripped the data query capacity of existing interface tools like SPARQL. Actual research also requires specialized tools for data analysis using raw original data. To solve these challenges, in December 2009 we developed the lightweight Semantic-JSON interface to access each fragment of linked and raw life sciences data securely under the control of programming languages popularly used by bioinformaticians such as Perl and Ruby. Researchers successfully used the interface across 28 million semantic relationships for biological applications including genome design, sequence processing, inference over phenotype databases, full-text search indexing and human-readable contents like ontology and LOD tree viewers. Semantic-JSON services of SciNetS.org are provided at http://semanticjson.org.

  18. Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases

    PubMed Central

    Kobayashi, Norio; Ishii, Manabu; Takahashi, Satoshi; Mochizuki, Yoshiki; Matsushima, Akihiro; Toyoda, Tetsuro

    2011-01-01

    Global cloud frameworks for bioinformatics research databases become huge and heterogeneous; solutions face various diametric challenges comprising cross-integration, retrieval, security and openness. To address this, as of March 2011 organizations including RIKEN published 192 mammalian, plant and protein life sciences databases having 8.2 million data records, integrated as Linked Open or Private Data (LOD/LPD) using SciNetS.org, the Scientists' Networking System. The huge quantity of linked data this database integration framework covers is based on the Semantic Web, where researchers collaborate by managing metadata across public and private databases in a secured data space. This outstripped the data query capacity of existing interface tools like SPARQL. Actual research also requires specialized tools for data analysis using raw original data. To solve these challenges, in December 2009 we developed the lightweight Semantic-JSON interface to access each fragment of linked and raw life sciences data securely under the control of programming languages popularly used by bioinformaticians such as Perl and Ruby. Researchers successfully used the interface across 28 million semantic relationships for biological applications including genome design, sequence processing, inference over phenotype databases, full-text search indexing and human-readable contents like ontology and LOD tree viewers. Semantic-JSON services of SciNetS.org are provided at http://semanticjson.org. PMID:21632604

  19. Federated Search and the Library Web Site: A Study of Association of Research Libraries Member Web Sites

    ERIC Educational Resources Information Center

    Williams, Sarah C.

    2010-01-01

    The purpose of this study was to investigate how federated search engines are incorporated into the Web sites of libraries in the Association of Research Libraries. In 2009, information was gathered for each library in the Association of Research Libraries with a federated search engine. This included the name of the federated search service and…

  20. The Hanford Site generic component failure-rate database compared with other generic failure-rate databases

    SciTech Connect

    Reardon, M.F.; Zentner, M.D.

    1992-11-01

    The Risk Assessment Technology Group, Westinghouse Hanford Company (WHC), has compiled a component failure rate database to be used during risk and reliability analysis of nonreactor facilities. Because site-specific data for the Hanford Site are generally not kept or not compiled in a usable form, the database was assembled using information from a variety of other established sources. Generally, the most conservative failure rates were chosen from the databases reviewed. The Hanford Site database has since been used extensively in fault tree modeling of many Hanford Site facilities and systems. The purpose of this study was to evaluate the reasonableness of the data chosen for the Hanford Site database by comparing the values chosen with the values from the other databases.

  1. PBSword: a web server for searching similar protein–protein binding sites

    PubMed Central

    Pang, Bin; Kuang, Xingyan; Zhao, Nan; Korkin, Dmitry; Shyu, Chi-Ren

    2012-01-01

    PBSword is a web server designed for efficient and accurate comparisons and searches of geometrically similar protein–protein binding sites from a large-scale database. The basic idea of PBSword is that each protein binding site is first represented by a high-dimensional vector of ‘visual words’, which characterizes both the global and local shape features of the binding site. It then uses a scalable indexing technique to search for those binding sites whose visual words representations are similar to that of the query binding site. Our system is able to return ranked results of binding sites in short time from a database of 194 322 domain–domain binding sites. PBSword supports query by protein ID and by new structures uploaded by users. PBSword is a useful tool to investigate functional connections among proteins based on the local structures of binding site and has potential applications to protein–protein docking and drug discovery. The system is hosted at http://pbs.rnet.missouri.edu. PMID:22689645

  2. A web-based genomic sequence database for the Streptomycetaceae: a tool for systematics and genome mining

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The ARS Microbial Genome Sequence Database (http://199.133.98.43), a web-based database server, was established utilizing the BIGSdb (Bacterial Isolate Genomics Sequence Database) software package, developed at Oxford University, as a tool to manage multi-locus sequence data for the family Streptomy...

  3. Tools and databases of the KOMICS web portal for preprocessing, mining, and dissemination of metabolomics data.

    PubMed

    Sakurai, Nozomu; Ara, Takeshi; Enomoto, Mitsuo; Motegi, Takeshi; Morishita, Yoshihiko; Kurabayashi, Atsushi; Iijima, Yoko; Ogata, Yoshiyuki; Nakajima, Daisuke; Suzuki, Hideyuki; Shibata, Daisuke

    2014-01-01

    A metabolome--the collection of comprehensive quantitative data on metabolites in an organism--has been increasingly utilized for applications such as data-intensive systems biology, disease diagnostics, biomarker discovery, and assessment of food quality. A considerable number of tools and databases have been developed to date for the analysis of data generated by various combinations of chromatography and mass spectrometry. We report here a web portal named KOMICS (The Kazusa Metabolomics Portal), where the tools and databases that we developed are available for free to academic users. KOMICS includes the tools and databases for preprocessing, mining, visualization, and publication of metabolomics data. Improvements in the annotation of unknown metabolites and dissemination of comprehensive metabolomic data are the primary aims behind the development of this portal. For this purpose, PowerGet and FragmentAlign include a manual curation function for the results of metabolite feature alignments. A metadata-specific wiki-based database, Metabolonote, functions as a hub of web resources related to the submitters' work. This feature is expected to increase citation of the submitters' work, thereby promoting data publication. As an example of the practical use of KOMICS, a workflow for a study on Jatropha curcas is presented. The tools and databases available at KOMICS should contribute to enhanced production, interpretation, and utilization of metabolomic Big Data. PMID:24949426

  4. Tools and databases of the KOMICS web portal for preprocessing, mining, and dissemination of metabolomics data.

    PubMed

    Sakurai, Nozomu; Ara, Takeshi; Enomoto, Mitsuo; Motegi, Takeshi; Morishita, Yoshihiko; Kurabayashi, Atsushi; Iijima, Yoko; Ogata, Yoshiyuki; Nakajima, Daisuke; Suzuki, Hideyuki; Shibata, Daisuke

    2014-01-01

    A metabolome--the collection of comprehensive quantitative data on metabolites in an organism--has been increasingly utilized for applications such as data-intensive systems biology, disease diagnostics, biomarker discovery, and assessment of food quality. A considerable number of tools and databases have been developed to date for the analysis of data generated by various combinations of chromatography and mass spectrometry. We report here a web portal named KOMICS (The Kazusa Metabolomics Portal), where the tools and databases that we developed are available for free to academic users. KOMICS includes the tools and databases for preprocessing, mining, visualization, and publication of metabolomics data. Improvements in the annotation of unknown metabolites and dissemination of comprehensive metabolomic data are the primary aims behind the development of this portal. For this purpose, PowerGet and FragmentAlign include a manual curation function for the results of metabolite feature alignments. A metadata-specific wiki-based database, Metabolonote, functions as a hub of web resources related to the submitters' work. This feature is expected to increase citation of the submitters' work, thereby promoting data publication. As an example of the practical use of KOMICS, a workflow for a study on Jatropha curcas is presented. The tools and databases available at KOMICS should contribute to enhanced production, interpretation, and utilization of metabolomic Big Data.

  5. Personality in cyberspace: personal Web sites as media for personality expressions and impressions.

    PubMed

    Marcus, Bernd; Machilek, Franz; Schütz, Astrid

    2006-06-01

    This research examined the personality of owners of personal Web sites based on self-reports, visitors' ratings, and the content of the Web sites. The authors compared a large sample of Web site owners with population-wide samples on the Big Five dimensions of personality. Controlling for demographic differences, the average Web site owner reported being slightly less extraverted and more open to experience. Compared with various other samples, Web site owners did not generally differ on narcissism, self-monitoring, or self-esteem, but gender differences on these traits were often smaller in Web site owners. Self-other agreement was highest with Openness to Experience, but valid judgments of all Big Five dimensions were derived from Web sites providing rich information. Visitors made use of quantifiable features of the Web site to infer personality, and the cues they utilized partly corresponded to self-reported traits. PMID:16784349

  6. Personality in cyberspace: personal Web sites as media for personality expressions and impressions.

    PubMed

    Marcus, Bernd; Machilek, Franz; Schütz, Astrid

    2006-06-01

    This research examined the personality of owners of personal Web sites based on self-reports, visitors' ratings, and the content of the Web sites. The authors compared a large sample of Web site owners with population-wide samples on the Big Five dimensions of personality. Controlling for demographic differences, the average Web site owner reported being slightly less extraverted and more open to experience. Compared with various other samples, Web site owners did not generally differ on narcissism, self-monitoring, or self-esteem, but gender differences on these traits were often smaller in Web site owners. Self-other agreement was highest with Openness to Experience, but valid judgments of all Big Five dimensions were derived from Web sites providing rich information. Visitors made use of quantifiable features of the Web site to infer personality, and the cues they utilized partly corresponded to self-reported traits.

  7. RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database.

    PubMed

    Miao, Zhichao; Westhof, Eric

    2016-07-01

    RBscore&NBench combines a web server, RBscore and a database, NBench. RBscore predicts RNA-/DNA-binding residues in proteins and visualizes the prediction scores and features on protein structures. The scoring scheme of RBscore directly links feature values to nucleic acid binding probabilities and illustrates the nucleic acid binding energy funnel on the protein surface. To avoid dataset, binding site definition and assessment metric biases, we compared RBscore with 18 web servers and 3 stand-alone programs on 41 datasets, which demonstrated the high and stable accuracy of RBscore. A comprehensive comparison led us to develop a benchmark database named NBench. The web server is available on: http://ahsoka.u-strasbg.fr/rbscorenbench/. PMID:27084939

  8. RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database.

    PubMed

    Miao, Zhichao; Westhof, Eric

    2016-07-01

    RBscore&NBench combines a web server, RBscore and a database, NBench. RBscore predicts RNA-/DNA-binding residues in proteins and visualizes the prediction scores and features on protein structures. The scoring scheme of RBscore directly links feature values to nucleic acid binding probabilities and illustrates the nucleic acid binding energy funnel on the protein surface. To avoid dataset, binding site definition and assessment metric biases, we compared RBscore with 18 web servers and 3 stand-alone programs on 41 datasets, which demonstrated the high and stable accuracy of RBscore. A comprehensive comparison led us to develop a benchmark database named NBench. The web server is available on: http://ahsoka.u-strasbg.fr/rbscorenbench/.

  9. Current Trends and New Challenges of Databases and Web Applications for Systems Driven Biological Research

    PubMed Central

    Sreenivasaiah, Pradeep Kumar; Kim, Do Han

    2010-01-01

    Dynamic and rapidly evolving nature of systems driven research imposes special requirements on the technology, approach, design and architecture of computational infrastructure including database and Web application. Several solutions have been proposed to meet the expectations and novel methods have been developed to address the persisting problems of data integration. It is important for researchers to understand different technologies and approaches. Having familiarized with the pros and cons of the existing technologies, researchers can exploit its capabilities to the maximum potential for integrating data. In this review we discuss the architecture, design and key technologies underlying some of the prominent databases and Web applications. We will mention their roles in integration of biological data and investigate some of the emerging design concepts and computational technologies that are likely to have a key role in the future of systems driven biomedical research. PMID:21423387

  10. [The Development and Application of the Orthopaedics Implants Failure Database Software Based on WEB].

    PubMed

    Huang, Jiahua; Zhou, Hai; Zhang, Binbin; Ding, Biao

    2015-09-01

    This article develops a new failure database software for orthopaedics implants based on WEB. The software is based on B/S mode, ASP dynamic web technology is used as its main development language to achieve data interactivity, Microsoft Access is used to create a database, these mature technologies make the software extend function or upgrade easily. In this article, the design and development idea of the software, the software working process and functions as well as relative technical features are presented. With this software, we can store many different types of the fault events of orthopaedics implants, the failure data can be statistically analyzed, and in the macroscopic view, it can be used to evaluate the reliability of orthopaedics implants and operations, it also can ultimately guide the doctors to improve the clinical treatment level.

  11. An integrated medical image database and retrieval system using a web application server.

    PubMed

    Cao, Pengyu; Hashiba, Masao; Akazawa, Kouhei; Yamakawa, Tomoko; Matsuto, Takayuki

    2003-08-01

    We developed an Integrated Medical Image Database and Retrieval System (INIS) for easy access by medical staff. The INIS mainly consisted of four parts: specific servers to save medical images from multi-vendor modalities of CT, MRI, CR, ECG and endoscopy; an integrated image database (DB) server to save various kinds of images in a DICOM format; a Web application server to connect clients to the integrated image DB and the Web browser terminals connected to an HIS system. The INIS provided a common screen design to retrieve CT, MRI, CR, endoscopic and ECG images, and radiological reports, which would allow doctors to retrieve radiological images and corresponding reports, or ECG images of a patient simultaneously on a screen. Doctors working in internal medicine on average accessed information 492 times a month. Doctors working in cardiological and gastroenterological accessed information 308 times a month. Using the INIS, medical staff could browse all or parts of a patient's medical images and reports.

  12. Current trends and new challenges of databases and web applications for systems driven biological research.

    PubMed

    Sreenivasaiah, Pradeep Kumar; Kim, Do Han

    2010-01-01

    Dynamic and rapidly evolving nature of systems driven research imposes special requirements on the technology, approach, design and architecture of computational infrastructure including database and Web application. Several solutions have been proposed to meet the expectations and novel methods have been developed to address the persisting problems of data integration. It is important for researchers to understand different technologies and approaches. Having familiarized with the pros and cons of the existing technologies, researchers can exploit its capabilities to the maximum potential for integrating data. In this review we discuss the architecture, design and key technologies underlying some of the prominent databases and Web applications. We will mention their roles in integration of biological data and investigate some of the emerging design concepts and computational technologies that are likely to have a key role in the future of systems driven biomedical research.

  13. The New USGS Volcano Hazards Program Web Site

    NASA Astrophysics Data System (ADS)

    Venezky, D. Y.; Graham, S. E.; Parker, T. J.; Snedigar, S. F.

    2008-12-01

    The U.S. Geological Survey's (USGS) Volcano Hazard Program (VHP) has launched a revised web site that uses a map-based interface to display hazards information for U.S. volcanoes. The web site is focused on better communication of hazards and background volcano information to our varied user groups by reorganizing content based on user needs and improving data display. The Home Page provides a synoptic view of the activity level of all volcanoes for which updates are written using a custom Google® Map. Updates are accessible by clicking on one of the map icons or clicking on the volcano of interest in the adjacent color-coded list of updates. The new navigation provides rapid access to volcanic activity information, background volcano information, images and publications, volcanic hazards, information about VHP, and the USGS volcano observatories. The Volcanic Activity section was tailored for emergency managers but provides information for all our user groups. It includes a Google® Map of the volcanoes we monitor, an Elevated Activity Page, a general status page, information about our Volcano Alert Levels and Aviation Color Codes, monitoring information, and links to monitoring data from VHP's volcano observatories: Alaska Volcano Observatory (AVO), Cascades Volcano Observatory (CVO), Long Valley Observatory (LVO), Hawaiian Volcano Observatory (HVO), and Yellowstone Volcano Observatory (YVO). The YVO web site was the first to move to the new navigation system and we are working on integrating the Long Valley Observatory web site next. We are excited to continue to implement new geospatial technologies to better display our hazards and supporting volcano information.

  14. Sagace: A web-based search engine for biomedical databases in Japan

    PubMed Central

    2012-01-01

    Background In the big data era, biomedical research continues to generate a large amount of data, and the generated information is often stored in a database and made publicly available. Although combining data from multiple databases should accelerate further studies, the current number of life sciences databases is too large to grasp features and contents of each database. Findings We have developed Sagace, a web-based search engine that enables users to retrieve information from a range of biological databases (such as gene expression profiles and proteomics data) and biological resource banks (such as mouse models of disease and cell lines). With Sagace, users can search more than 300 databases in Japan. Sagace offers features tailored to biomedical research, including manually tuned ranking, a faceted navigation to refine search results, and rich snippets constructed with retrieved metadata for each database entry. Conclusions Sagace will be valuable for experts who are involved in biomedical research and drug development in both academia and industry. Sagace is freely available at http://sagace.nibio.go.jp/en/. PMID:23110816

  15. State prescription drug price Web sites: how useful to consumers?

    PubMed

    Tu, Ha T; Corey, Catherine G

    2008-02-01

    To aid consumers in comparing prescription drug costs, many states have launched Web sites to publish drug prices offered by local retail pharmacies. The current push to make retail pharmacy prices accessible to consumers is part of a much broader movement to increase price transparency throughout the health-care sector. Efforts to encourage price-based shopping for hospital and physician services have encountered widespread concerns, both on grounds that prices for complex services are difficult to measure and compare accurately and that quality varies substantially across providers. Experts agree, however, that prescription drugs are much easier to shop for than other, more complex health services. However, extensive gaps in available price information--the result of relying on Medicaid data--seriously hamper the effectiveness of state drug price-comparison Web sites, according to a new study by the Center for Studying Health System Change (HSC). An alternative approach--requiring pharmacies to submit price lists to the states--would improve the usefulness of price information, but pharmacies typically oppose such a mandate. Another limitation of most state Web sites is that price information is restricted to local pharmacies, when online pharmacies, both U.S. and foreign, often sell prescription drugs at substantially lower prices. To further enhance consumer shopping tools, states might consider expanding the types of information provided, including online pharmacy comparison tools, lists of deeply discounted generic drugs offered by discount retailers, and lists of local pharmacies offering price matches. PMID:18494180

  16. Construction of an Ortholog Database Using the Semantic Web Technology for Integrative Analysis of Genomic Data

    PubMed Central

    Chiba, Hirokazu; Nishide, Hiroyo; Uchiyama, Ikuo

    2015-01-01

    Recently, various types of biological data, including genomic sequences, have been rapidly accumulating. To discover biological knowledge from such growing heterogeneous data, a flexible framework for data integration is necessary. Ortholog information is a central resource for interlinking corresponding genes among different organisms, and the Semantic Web provides a key technology for the flexible integration of heterogeneous data. We have constructed an ortholog database using the Semantic Web technology, aiming at the integration of numerous genomic data and various types of biological information. To formalize the structure of the ortholog information in the Semantic Web, we have constructed the Ortholog Ontology (OrthO). While the OrthO is a compact ontology for general use, it is designed to be extended to the description of database-specific concepts. On the basis of OrthO, we described the ortholog information from our Microbial Genome Database for Comparative Analysis (MBGD) in the form of Resource Description Framework (RDF) and made it available through the SPARQL endpoint, which accepts arbitrary queries specified by users. In this framework based on the OrthO, the biological data of different organisms can be integrated using the ortholog information as a hub. Besides, the ortholog information from different data sources can be compared with each other using the OrthO as a shared ontology. Here we show some examples demonstrating that the ortholog information described in RDF can be used to link various biological data such as taxonomy information and Gene Ontology. Thus, the ortholog database using the Semantic Web technology can contribute to biological knowledge discovery through integrative data analysis. PMID:25875762

  17. Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.

    PubMed

    Chiba, Hirokazu; Nishide, Hiroyo; Uchiyama, Ikuo

    2015-01-01

    Recently, various types of biological data, including genomic sequences, have been rapidly accumulating. To discover biological knowledge from such growing heterogeneous data, a flexible framework for data integration is necessary. Ortholog information is a central resource for interlinking corresponding genes among different organisms, and the Semantic Web provides a key technology for the flexible integration of heterogeneous data. We have constructed an ortholog database using the Semantic Web technology, aiming at the integration of numerous genomic data and various types of biological information. To formalize the structure of the ortholog information in the Semantic Web, we have constructed the Ortholog Ontology (OrthO). While the OrthO is a compact ontology for general use, it is designed to be extended to the description of database-specific concepts. On the basis of OrthO, we described the ortholog information from our Microbial Genome Database for Comparative Analysis (MBGD) in the form of Resource Description Framework (RDF) and made it available through the SPARQL endpoint, which accepts arbitrary queries specified by users. In this framework based on the OrthO, the biological data of different organisms can be integrated using the ortholog information as a hub. Besides, the ortholog information from different data sources can be compared with each other using the OrthO as a shared ontology. Here we show some examples demonstrating that the ortholog information described in RDF can be used to link various biological data such as taxonomy information and Gene Ontology. Thus, the ortholog database using the Semantic Web technology can contribute to biological knowledge discovery through integrative data analysis.

  18. Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.

    PubMed

    Chiba, Hirokazu; Nishide, Hiroyo; Uchiyama, Ikuo

    2015-01-01

    Recently, various types of biological data, including genomic sequences, have been rapidly accumulating. To discover biological knowledge from such growing heterogeneous data, a flexible framework for data integration is necessary. Ortholog information is a central resource for interlinking corresponding genes among different organisms, and the Semantic Web provides a key technology for the flexible integration of heterogeneous data. We have constructed an ortholog database using the Semantic Web technology, aiming at the integration of numerous genomic data and various types of biological information. To formalize the structure of the ortholog information in the Semantic Web, we have constructed the Ortholog Ontology (OrthO). While the OrthO is a compact ontology for general use, it is designed to be extended to the description of database-specific concepts. On the basis of OrthO, we described the ortholog information from our Microbial Genome Database for Comparative Analysis (MBGD) in the form of Resource Description Framework (RDF) and made it available through the SPARQL endpoint, which accepts arbitrary queries specified by users. In this framework based on the OrthO, the biological data of different organisms can be integrated using the ortholog information as a hub. Besides, the ortholog information from different data sources can be compared with each other using the OrthO as a shared ontology. Here we show some examples demonstrating that the ortholog information described in RDF can be used to link various biological data such as taxonomy information and Gene Ontology. Thus, the ortholog database using the Semantic Web technology can contribute to biological knowledge discovery through integrative data analysis. PMID:25875762

  19. Protein backbone torsion angle-based structure comparison and secondary structure database web server.

    PubMed

    Jung, Sunghoon; Bae, Se-Eun; Ahn, Insung; Son, Hyeon S

    2013-09-01

    Structural information has been a major concern for biological and pharmaceutical studies for its intimate relationship to the function of a protein. Three-dimensional representation of the positions of protein atoms is utilized among many structural information repositories that have been published. The reliability of the torsional system, which represents the native processes of structural change in the structural analysis, was partially proven with previous structural alignment studies. Here, a web server providing structural information and analysis based on the backbone torsional representation of a protein structure is newly introduced. The web server offers functions of secondary structure database search, secondary structure calculation, and pair-wise protein structure comparison, based on a backbone torsion angle representation system. Application of the implementation in pair-wise structural alignment showed highly accurate results. The information derived from this web server might be further utilized in the field of ab initio protein structure modeling or protein homology-related analyses.

  20. Purpose and Features of Web-Based Open-Access Crystallographic Databases

    NASA Astrophysics Data System (ADS)

    Sondergeld, Peter; Moeck, Peter; Dusek, Boris; Hanke, Hynek

    2008-05-01

    Roughly 5,000 new crystal structures are added to the (approximately 104,000 entry) Inorganic Crystal Structure Database each year (see http://icsdweb.fiz-karlsruhe.de/index.php for an approximately 4,000 entry demonstration version). Other commercial crystallographic databases specialize in organics, metals and alloys, and ``non-organics'' including minerals. This presentation gives an overview over these databases and evaluates the potential of open-access databases such as the (approximately 68,000 entry) Crystallography Open Database (http://crystallography.net/) and Portland State University's (PSU's) Wiki Crystallography Database, Crystal Morphology Database, and Nano-Crystallography Database (http://nanocrystallography.research.pdx.edu/CIF-searchable). Key features of open-access crystallographic databases are: a universal data exchange format, unrestricted internet access to the actual data (including downloads), search capabilities, and crystal structure identification functionalities. Interactive three-dimensional structure or morphology visualizations are also available at PSU's site. Most recently, we implemented at PSU community-based, Wikipedia-inspired data upload and database content management provisions. A selection of all of these features will be demonstrated (online) during the presentation.

  1. How Accessible Are Public Libraries' Web Sites? A Study of Georgia Public Libraries

    ERIC Educational Resources Information Center

    Ingle, Emma; Green, Ravonne A.; Huprich, Julia

    2009-01-01

    One issue that public librarians must consider when planning Web site design is accessibility for patrons with disabilities. This article reports a study of Web site accessibility of public libraries in Georgia. The focus of the report is whether public libraries use accessible guidelines and standards in making their Web sites accessible. An…

  2. Investigating Web Sites of Faculties of Education: The Case of Turkey

    ERIC Educational Resources Information Center

    Kutluca, Tamer; Aydin, Serhat; Baki, Adnan

    2009-01-01

    The purpose of this paper is to explore the current status of the web sites of the Faculties of Education (FOEs) in Turkey. Bearing this in mind, a "Web Site Assessment Form" comprising thirty-seven items was developed and the web sites of the FOEs were evaluated with respect to "Content," "Currency," "Structure and Navigation" and "Visual Design"…

  3. 78 FR 54241 - Proposed Information Collection; Comment Request; BroadbandMatch Web Site Tool

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-03

    ...; BroadbandMatch Web Site Tool AGENCY: National Telecommunications and Information Administration, Commerce... deployment and use in the United States. The BroadbandMatch Web site began during the final funding round of... of Collection BroadbandMatch users access the Web site through an Internet browser and...

  4. 75 FR 66413 - 30-Day Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-28

    ... Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration, DS-7006 ACTION... burden on those who are to respond. Abstract of Proposed Collection The Exchange Programs Alumni Web site requires information to process users' voluntary requests for participation in the Web site. Other...

  5. 75 FR 25025 - 60-Day Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-06

    ... Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration, DS-7006 ACTION... Collection: Exchange Programs Alumni Web site Registration. OMB Control Number: None. Type of Request... collection: The State Alumni Web site requires information to process users' voluntary request...

  6. 75 FR 384 - Event Problem Codes Web Site; Center for Devices and Radiological Health; Availability

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-05

    ... HUMAN SERVICES Food and Drug Administration Event Problem Codes Web Site; Center for Devices and... and Drug Administration (FDA) is announcing the availability of a Web site where the Center for...)). FDA is announcing the availability of a Web site that will make modifications to the problem...

  7. 75 FR 75962 - Proposed Information Collection; Comment Request; Commerce.Gov Web Site User Survey

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-07

    ... Office of the Secretary Proposed Information Collection; Comment Request; Commerce.Gov Web Site User... Commerce.gov and the Department of Commerce bureaus' Web sites, the Offices of Public Affairs will collect information from users about their experience on the Web sites. A random number of users will be...

  8. 77 FR 38033 - Notice of Establishment of a Commodity Import Approval Process Web Site

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-26

    ... Import Approval Process Web Site AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Notice. SUMMARY: We are announcing the creation of a new Plant Protection and Quarantine Web site that will... approval process and the opportunity to comment on draft risk assessments. This Web site will make...

  9. Beyond Electronic Brochures: An Analysis of Singapore Primary School Web Sites

    ERIC Educational Resources Information Center

    Hu, Chun; Soong, Andrew Kheng Fah

    2007-01-01

    This study aims to investigate how Singapore primary schools use their web sites, what kind of information is contained in the web sites, and how the information is presented. Based on an analysis of 176 primary school web sites, which represent all but one of the country's primary schools, findings indicate that most of Singapore's primary school…

  10. Assessing an Infant Feeding Web Site as a Nutrition Education Tool for Child Care Providers

    ERIC Educational Resources Information Center

    Clark, Alena; Anderson, Jennifer; Adams, Elizabeth; Baker, Susan; Barrett, Karen

    2009-01-01

    Objective: Determine child care providers' infant feeding knowledge, attitude and behavior changes after viewing the infant feeding Web site and determine the effectiveness of the Web site and bilingual educational materials. Design: Intervention and control groups completed an on-line pretest survey, viewed a Web site for 3 months, and completed…

  11. 5 CFR 2604.201 - Public reading room facility and Web site.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 5 Administrative Personnel 3 2013-01-01 2013-01-01 false Public reading room facility and Web site... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.201 Public reading room facility and Web site. (a)(1) Location of public reading...

  12. 5 CFR 2604.201 - Public reading room facility and Web site.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 5 Administrative Personnel 3 2014-01-01 2014-01-01 false Public reading room facility and Web site... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.201 Public reading room facility and Web site. (a)(1) Location of public reading...

  13. 5 CFR 2604.201 - Public reading room facility and Web site.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 5 Administrative Personnel 3 2011-01-01 2011-01-01 false Public reading room facility and Web site... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.201 Public reading room facility and Web site. (a)(1) Location of public reading...

  14. 5 CFR 2604.201 - Public reading room facility and Web site.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 5 Administrative Personnel 3 2012-01-01 2012-01-01 false Public reading room facility and Web site... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.201 Public reading room facility and Web site. (a)(1) Location of public reading...

  15. 5 CFR 2604.201 - Public reading room facility and Web site.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 5 Administrative Personnel 3 2010-01-01 2010-01-01 false Public reading room facility and Web site... DISCLOSURE REPORTS FOIA Public Reading Room Facility and Web Site; Index Identifying Information for the Public § 2604.201 Public reading room facility and Web site. (a)(1) Location of public reading...

  16. An open source Java web application to build self-contained Web GIS sites

    NASA Astrophysics Data System (ADS)

    Zavala Romero, O.; Ahmed, A.; Chassignet, E.; Zavala-Hidalgo, J.

    2014-12-01

    This work describes OWGIS, an open source Java web application that creates Web GIS sites by automatically writing HTML and JavaScript code. OWGIS is configured by XML files that define which layers (geographic datasets) will be displayed on the websites. This project uses several Open Geospatial Consortium standards to request data from typical map servers, such as GeoServer, and is also able to request data from ncWMS servers. The latter allows for the displaying of 4D data stored using the NetCDF file format (widely used for storing environmental model datasets). Some of the features available on the sites built with OWGIS are: multiple languages, animations, vertical profiles and vertical transects, color palettes, color ranges, and the ability to download data. OWGIS main users are scientists, such as oceanographers or climate scientists, who store their data in NetCDF files and want to analyze, visualize, share, or compare their data using a website.

  17. APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

    PubMed

    You, Leiming; Wu, Jiexin; Feng, Yuchao; Fu, Yonggui; Guo, Yanan; Long, Liyuan; Zhang, Hui; Luan, Yijie; Tian, Peng; Chen, Liangfu; Huang, Guangrui; Huang, Shengfeng; Li, Yuxin; Li, Jie; Chen, Chengyong; Zhang, Yaqing; Chen, Shangwu; Xu, Anlong

    2015-01-01

    Increasing amounts of genes have been shown to utilize alternative polyadenylation (APA) 3'-processing sites depending on the cell and tissue type and/or physiological and pathological conditions at the time of processing, and the construction of genome-wide database regarding APA is urgently needed for better understanding poly(A) site selection and APA-directed gene expression regulation for a given biology. Here we present a web-accessible database, named APASdb (http://mosas.sysu.edu.cn/utr), which can visualize the precise map and usage quantification of different APA isoforms for all genes. The datasets are deeply profiled by the sequencing alternative polyadenylation sites (SAPAS) method capable of high-throughput sequencing 3'-ends of polyadenylated transcripts. Thus, APASdb details all the heterogeneous cleavage sites downstream of poly(A) signals, and maintains near complete coverage for APA sites, much better than the previous databases using conventional methods. Furthermore, APASdb provides the quantification of a given APA variant among transcripts with different APA sites by computing their corresponding normalized-reads, making our database more useful. In addition, APASdb supports URL-based retrieval, browsing and display of exon-intron structure, poly(A) signals, poly(A) sites location and usage reads, and 3'-untranslated regions (3'-UTRs). Currently, APASdb involves APA in various biological processes and diseases in human, mouse and zebrafish.

  18. APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals

    PubMed Central

    You, Leiming; Wu, Jiexin; Feng, Yuchao; Fu, Yonggui; Guo, Yanan; Long, Liyuan; Zhang, Hui; Luan, Yijie; Tian, Peng; Chen, Liangfu; Huang, Guangrui; Huang, Shengfeng; Li, Yuxin; Li, Jie; Chen, Chengyong; Zhang, Yaqing; Chen, Shangwu; Xu, Anlong

    2015-01-01

    Increasing amounts of genes have been shown to utilize alternative polyadenylation (APA) 3′-processing sites depending on the cell and tissue type and/or physiological and pathological conditions at the time of processing, and the construction of genome-wide database regarding APA is urgently needed for better understanding poly(A) site selection and APA-directed gene expression regulation for a given biology. Here we present a web-accessible database, named APASdb (http://mosas.sysu.edu.cn/utr), which can visualize the precise map and usage quantification of different APA isoforms for all genes. The datasets are deeply profiled by the sequencing alternative polyadenylation sites (SAPAS) method capable of high-throughput sequencing 3′-ends of polyadenylated transcripts. Thus, APASdb details all the heterogeneous cleavage sites downstream of poly(A) signals, and maintains near complete coverage for APA sites, much better than the previous databases using conventional methods. Furthermore, APASdb provides the quantification of a given APA variant among transcripts with different APA sites by computing their corresponding normalized-reads, making our database more useful. In addition, APASdb supports URL-based retrieval, browsing and display of exon-intron structure, poly(A) signals, poly(A) sites location and usage reads, and 3′-untranslated regions (3′-UTRs). Currently, APASdb involves APA in various biological processes and diseases in human, mouse and zebrafish. PMID:25378337

  19. PmiRExAt: plant miRNA expression atlas database and web applications

    PubMed Central

    Gurjar, Anoop Kishor Singh; Panwar, Abhijeet Singh; Gupta, Rajinder; Mantri, Shrikant S.

    2016-01-01

    High-throughput small RNA (sRNA) sequencing technology enables an entirely new perspective for plant microRNA (miRNA) research and has immense potential to unravel regulatory networks. Novel insights gained through data mining in publically available rich resource of sRNA data will help in designing biotechnology-based approaches for crop improvement to enhance plant yield and nutritional value. Bioinformatics resources enabling meta-analysis of miRNA expression across multiple plant species are still evolving. Here, we report PmiRExAt, a new online database resource that caters plant miRNA expression atlas. The web-based repository comprises of miRNA expression profile and query tool for 1859 wheat, 2330 rice and 283 maize miRNA. The database interface offers open and easy access to miRNA expression profile and helps in identifying tissue preferential, differential and constitutively expressing miRNAs. A feature enabling expression study of conserved miRNA across multiple species is also implemented. Custom expression analysis feature enables expression analysis of novel miRNA in total 117 datasets. New sRNA dataset can also be uploaded for analysing miRNA expression profiles for 73 plant species. PmiRExAt application program interface, a simple object access protocol web service allows other programmers to remotely invoke the methods written for doing programmatic search operations on PmiRExAt database. Database URL: http://pmirexat.nabi.res.in. PMID:27081157

  20. VIPERdb2: an enhanced and web API enabled relational database for structural virology

    PubMed Central

    Carrillo-Tripp, Mauricio; Shepherd, Craig M.; Borelli, Ian A.; Venkataraman, Sangita; Lander, Gabriel; Natarajan, Padmaja; Johnson, John E.; Brooks, Charles L.; Reddy, Vijay S.

    2009-01-01

    VIPERdb (http://viperdb.scripps.edu) is a relational database and a web portal for icosahedral virus capsid structures. Our aim is to provide a comprehensive resource specific to the needs of the virology community, with an emphasis on the description and comparison of derived data from structural and computational analyses of the virus capsids. In the current release, VIPERdb2, we implemented a useful and novel method to represent capsid protein residues in the icosahedral asymmetric unit (IAU) using azimuthal polar orthographic projections, otherwise known as Φ–Ψ (Phi–Psi) diagrams. In conjunction with a new Application Programming Interface (API), these diagrams can be used as a dynamic interface to the database to map residues (categorized as surface, interface and core residues) and identify family wide conserved residues including hotspots at the interfaces. Additionally, we enhanced the interactivity with the database by interfacing with web-based tools. In particular, the applications Jmol and STRAP were implemented to visualize and interact with the virus molecular structures and provide sequence–structure alignment capabilities. Together with extended curation practices that maintain data uniformity, a relational database implementation based on a schema for macromolecular structures and the APIs provided will greatly enhance the ability to do structural bioinformatics analysis of virus capsids. PMID:18981051

  1. Web and database software for identification of intact proteins using "top down" mass spectrometry.

    PubMed

    Taylor, Gregory K; Kim, Yong-Bin; Forbes, Andrew J; Meng, Fanyu; McCarthy, Ryan; Kelleher, Neil L

    2003-08-15

    For the identification and characterization of proteins harboring posttranslational modifications (PTMs), a "top down" strategy using mass spectrometry has been forwarded recently but languishes without tailored software widely available. We describe a Web-based software and database suite called ProSight PTM constructed for large-scale proteome projects involving direct fragmentation of intact protein ions. Four main components of ProSight PTM are a database retrieval algorithm (Retriever), MySQL protein databases, a file/data manager, and a project tracker. Retriever performs probability-based identifications from absolute fragment ion masses, automatically compiled sequence tags, or a combination of the two, with graphical rendering and browsing of the results. The database structure allows known and putative protein forms to be searched, with prior or predicted PTM knowledge used during each search. Initial functionality is illustrated with a 36-kDa yeast protein identified from a processed cell extract after automated data acquisition using a quadrupole-FT hybrid mass spectrometer. A +142-Da delta(m) on glyceraldehyde-3-phosphate dehydrogenase was automatically localized between Asp90 and Asp192, consistent with its two cystine residues (149 and 153) alkylated by acrylamide (+71 Da each) during the gel-based sample preparation. ProSight PTM is the first search engine and Web environment for identification of intact proteins (https://prosightptm.scs.uiuc.edu/). PMID:14632120

  2. Web and database software for identification of intact proteins using "top down" mass spectrometry.

    PubMed

    Taylor, Gregory K; Kim, Yong-Bin; Forbes, Andrew J; Meng, Fanyu; McCarthy, Ryan; Kelleher, Neil L

    2003-08-15

    For the identification and characterization of proteins harboring posttranslational modifications (PTMs), a "top down" strategy using mass spectrometry has been forwarded recently but languishes without tailored software widely available. We describe a Web-based software and database suite called ProSight PTM constructed for large-scale proteome projects involving direct fragmentation of intact protein ions. Four main components of ProSight PTM are a database retrieval algorithm (Retriever), MySQL protein databases, a file/data manager, and a project tracker. Retriever performs probability-based identifications from absolute fragment ion masses, automatically compiled sequence tags, or a combination of the two, with graphical rendering and browsing of the results. The database structure allows known and putative protein forms to be searched, with prior or predicted PTM knowledge used during each search. Initial functionality is illustrated with a 36-kDa yeast protein identified from a processed cell extract after automated data acquisition using a quadrupole-FT hybrid mass spectrometer. A +142-Da delta(m) on glyceraldehyde-3-phosphate dehydrogenase was automatically localized between Asp90 and Asp192, consistent with its two cystine residues (149 and 153) alkylated by acrylamide (+71 Da each) during the gel-based sample preparation. ProSight PTM is the first search engine and Web environment for identification of intact proteins (https://prosightptm.scs.uiuc.edu/).

  3. PmiRExAt: plant miRNA expression atlas database and web applications.

    PubMed

    Gurjar, Anoop Kishor Singh; Panwar, Abhijeet Singh; Gupta, Rajinder; Mantri, Shrikant S

    2016-01-01

    High-throughput small RNA (sRNA) sequencing technology enables an entirely new perspective for plant microRNA (miRNA) research and has immense potential to unravel regulatory networks. Novel insights gained through data mining in publically available rich resource of sRNA data will help in designing biotechnology-based approaches for crop improvement to enhance plant yield and nutritional value. Bioinformatics resources enabling meta-analysis of miRNA expression across multiple plant species are still evolving. Here, we report PmiRExAt, a new online database resource that caters plant miRNA expression atlas. The web-based repository comprises of miRNA expression profile and query tool for 1859 wheat, 2330 rice and 283 maize miRNA. The database interface offers open and easy access to miRNA expression profile and helps in identifying tissue preferential, differential and constitutively expressing miRNAs. A feature enabling expression study of conserved miRNA across multiple species is also implemented. Custom expression analysis feature enables expression analysis of novel miRNA in total 117 datasets. New sRNA dataset can also be uploaded for analysing miRNA expression profiles for 73 plant species. PmiRExAt application program interface, a simple object access protocol web service allows other programmers to remotely invoke the methods written for doing programmatic search operations on PmiRExAt database.Database URL:http://pmirexat.nabi.res.in. PMID:27081157

  4. MetalS(3), a database-mining tool for the identification of structurally similar metal sites.

    PubMed

    Valasatava, Yana; Rosato, Antonio; Cavallaro, Gabriele; Andreini, Claudia

    2014-08-01

    We have developed a database search tool to identify metal sites having structural similarity to a query metal site structure within the MetalPDB database of minimal functional sites (MFSs) contained in metal-binding biological macromolecules. MFSs describe the local environment around the metal(s) independently of the larger context of the macromolecular structure. Such a local environment has a determinant role in tuning the chemical reactivity of the metal, ultimately contributing to the functional properties of the whole system. The database search tool, which we called MetalS(3) (Metal Sites Similarity Search), can be accessed through a Web interface at http://metalweb.cerm.unifi.it/tools/metals3/ . MetalS(3) uses a suitably adapted version of an algorithm that we previously developed to systematically compare the structure of the query metal site with each MFS in MetalPDB. For each MFS, the best superposition is kept. All these superpositions are then ranked according to the MetalS(3) scoring function and are presented to the user in tabular form. The user can interact with the output Web page to visualize the structural alignment or the sequence alignment derived from it. Options to filter the results are available. Test calculations show that the MetalS(3) output correlates well with expectations from protein homology considerations. Furthermore, we describe some usage scenarios that highlight the usefulness of MetalS(3) to obtain mechanistic and functional hints regardless of homology.

  5. A Review of Sexual Assault Information on College Web Sites.

    PubMed

    Schwartz, Rachel; McMahon, Sarah; Broadnax, Jesica

    2015-11-01

    This article presents a comprehensive review of information available on campus Web sites at all four-year colleges and universities in New Jersey. This study used a descriptive, content analysis methodology with a sample that consisted of 28 college and university Web pages. To evaluate the Web sites, ecological approaches were rated with a checklist created to document the presence and extent of information about sexual assault, including five key areas: (1) general information about sexual assault, (2) the availability of services for students, (3) information about how to report an incident of sexual assault, (4) whether there was a department exclusively dedicated to the school's response to sexual assault, and (5) information about the existence of a policy prohibiting sexual assault on campus. Almost all of the schools provided policies and information about services for students. However, the comprehensiveness of the information and the ease of finding it varied greatly by campus. The article concludes with a discussion of the implications for social workers and those responding to survivors of sexual assault on a college campus. PMID:26638503

  6. The MicrobesOnline Web site for comparative genomics

    SciTech Connect

    Alm, Eric J.; Huang, Katherine H.; Price, Morgan N.; Koche,Richard P.; Keller, Keith; Dubchak, Inna L.; Arkin, Adam P.

    2004-11-05

    At present, hundreds of microbial genomes have been sequenced, and hundreds more are currently in the pipeline. The Virtual Institute for Microbial Stress and Survival has developed a publicly available suite of Web-based comparative genomic tools (http://www.microbesonline.org) designed to facilitate multispecies comparison among prokaryotes. Highlights of the Microbes Online Web site include operon and regulon predictions, a multispecies genome browser, a multispecies Gene Ontology browser, a comparative KEGG metabolic pathway viewer, a Bioinformatics Workbench for in-depth sequence analysis, and Gene Carts that allow users to save genes of interest for further study while they browse. In addition, we provide an interface for genome annotation, which like all of the tools reported here, is freely available to the scientific community.

  7. The MicrobesOnline Web site for comparative genomics

    PubMed Central

    Alm, Eric J.; Huang, Katherine H.; Price, Morgan N.; Koche, Richard P.; Keller, Keith; Dubchak, Inna L.; Arkin, Adam P.

    2005-01-01

    At present, hundreds of microbial genomes have been sequenced, and hundreds more are currently in the pipeline. The Virtual Institute for Microbial Stress and Survival has developed a publicly available suite of Web-based comparative genomic tools (http://www.microbesonline.org) designed to facilitate multispecies comparison among prokaryotes. Highlights of the MicrobesOnline Web site include operon and regulon predictions, a multispecies genome browser, a multispecies Gene Ontology browser, a comparative KEGG metabolic pathway viewer, a Bioinformatics Workbench for in-depth sequence analysis, and Gene Carts that allow users to save genes of interest for further study while they browse. In addition, we provide an interface for genome annotation, which like all of the tools reported here, is freely available to the scientific community. PMID:15998914

  8. AIDS web sites face censorship under new rating schemes.

    PubMed

    1997-08-22

    The American Civil Liberties Union (ACLU) issued a position paper regarding the software industry's proposed rating standards that will block and rate information judged unsuitable for minors. Following the U.S. Supreme Court's overturning of the Communications Decency Act, a ruling that maintains a high level of free speech protection over the Internet, the software industry began examining mechanisms to rate online content. Legislators are considering criminal penalties for those who misrate a web page. These moves are seen as damaging to HIV/AIDS prevention and safe sex information web sites that utilize jargon, street language, and explicit diagrams to teach safe sex practices to a wide audience. It is noted that related ratings and censorships do not apply to print material.

  9. Exponential growth using the internet and your web site.

    PubMed

    Baxter, Robert

    2010-02-01

    Developing a successful Internet strategy can help attract new patients and take your practice to the next level. Today, as the Internet has evolved, it is more important than ever, especially as your competitors are likely pursuing more aggressive strategies themselves. There are several important components involved, and maximizing your efforts with each can help create a comprehensive and sound strategy that achieves significant results. Behind such a strategy you will find a strong focus in many areas, including Web site development, search engine optimization, link building, content creation, blogs, video, choosing a vendor, patient conversion, Web 2.0, social networking, reputation management, and more. Understanding each of these areas, and the efforts required to tackle each effectively, can help you ensure that your own Internet strategy is functioning well and reaching its true potential. PMID:20119902

  10. Rating Health Web sites using the principles of Citation Analysis: A Bibliometric Approach

    PubMed Central

    1999-01-01

    The rapid growth in the number of health care related web sites necessitates that medical librarians be able to evaluate the quality of the web sites. By analysing the linked sources medical libraries web pages of nineteen of the top U.S. medical schools, this study used the citation analysis method. What was found with this bibliometric approach was a set of 78 most highly cited WWW sites out of thousands of cited links. The identification of the current, core section of health sciences related web sites with a bibliometric method gives librarians and information scientists another approach for evaluating web sites. PMID:11720913

  11. Longitudinal analysis of meta-analysis literatures in the database of ISI Web of Science.

    PubMed

    Zhu, Changtai; Jiang, Ting; Cao, Hao; Sun, Wenguang; Chen, Zhong; Liu, Jinming

    2015-01-01

    The meta-analysis is regarded as an important evidence for making scientific decision. The database of ISI Web of Science collected a great number of high quality literatures including meta-analysis literatures. However, it is significant to understand the general characteristics of meta-analysis literatures to outline the perspective of meta-analysis. In this present study, we summarized and clarified some features on these literatures in the database of ISI Web of Science. We retrieved the meta-analysis literatures in the database of ISI Web of Science including SCI-E, SSCI, A&HCI, CPCI-S, CPCI-SSH, CCR-E, and IC. The annual growth rate, literature category, language, funding, index citation, agencies and countries/territories of the meta-analysis literatures were analyzed, respectively. A total of 95,719 records, which account for 0.38% (99% CI: 0.38%-0.39%) of all literatures, were found in the database. From 1997 to 2012, the annual growth rate of meta-analysis literatures was 18.18%. The literatures involved in many categories, languages, fundings, citations, publication agencies, and countries/territories. Interestingly, the index citation frequencies of the meta-analysis were significantly higher than that of other type literatures such as multi-centre study, randomize controlled trial, cohort study, case control study, and cases report (P<0.0001). The increasing numbers, intensively global influence and high citations revealed that the meta-analysis has been becoming more and more prominent in recent years. In future, in order to promote the validity of meta-analysis, the CONSORT and PRISMA standard should be continuously popularized in the field of evidence-based medicine.

  12. Computer Cache: Links to Their Stories: Children's Author and Illustrator Sites on the Web.

    ERIC Educational Resources Information Center

    Byerly, Greg; Brodie, Carolyn S.

    2000-01-01

    Annotates 41 Web sites that contain information on children's authors and illustrators that can be used to supplement print resources in school library media centers. Includes collective sites, individual sites, and publisher's sites. (LRW)

  13. Collaborative Learning Using Wiki Web Sites for Computer Science Undergraduate Education: A Case Study

    ERIC Educational Resources Information Center

    Tsai, W.-T.; Li, W.; Elston, J.; Chen, Y.

    2011-01-01

    This paper proposes a collaborative approach to enhancing the student learning experience based on Web 2.0 principles. Specifically, wiki Web sites are used by students for collaboration and for publication of course assignments, which are then shared with the class. Web 2.0 principles include: the Web as platform, harnessing collective…

  14. Where Are They Now? A Case Study of Health-related Web Site Attrition

    PubMed Central

    2002-01-01

    Background. When considering health-related Web sites, issues of quality generally focus on Web content. Little concern has been given to attrition of Web sites or the "fleeting" nature of health information on the World Wide Web. Since Web sites may be available for an uncertain period of time, a Web page may not be a sound reference. Objective. To address the issue of attrition, a defined set of health-related Web sites was examined at two separate time intervals. Methods. To determine the degree of attrition, Web sites obtained and recorded from a previous study were revisited approximately three years later. From December 1998 to May 1999, 184 Web sites were collected from which health claims were identified. During May and June 2002, the previously recorded URL for each Web site was entered into the address field of the browser Netscape Navigator. It was documented whether the original Web site could not be found, moved to a different URL location, or the URL and site location was found unchanged from the original search. For a Web site whose URL remained unchanged, it was also noted whether the site had maintained currency, (i.e. updated) since the original posting. To ensure that inaccessibility may not be due to temporary server problems, another attempt was made to access the sites at different periods of time. Results. When each URL address from the original set of 184 Web sites was re-entered into the address field of the browser, 108 (59%) of the sites could not be found, 31 (17%) had moved to a new URL address, and 45 (24%) of the sites could be found from the original URLs obtained in the previous study. Of the Web sites that moved to a new URL address, 7 sites provided a link from the original URL to redirect the viewer to the new location. Of the Web sites still in existence, 17 (38%) provided update information from the original posting. Conclusions. It can be difficult to locate information that was previously found on the Web, and if a reference

  15. Origins Of The Elements - An Educational Web Site

    NASA Astrophysics Data System (ADS)

    Samarasingha, Iranga; Ivans, I. I.

    2011-01-01

    This poster introduces a new and unique web site "ORIGINS OF THE ELEMENTS" to the astronomy and physics communities. The main objective of our site is to provide a useful reference guide to the origins of the elements for researchers, educators and students. Only a very few of the lightest elements have their origins at the earliest cosmological ages of the Universe, the Big Bang. Most of the elements found on the Earth, and in the rest of the Universe, owe their primary existence to stellar nucleosynthesis, either during the course of the energy generation lifetimes of stars, or in the exploding supernovae of stars at the end of their lives. A by-product of stellar energy generation and exploding supernovae is alchemy -- the ashes of the energy generation contribution of one element is another, more massive element. Although various reference sources are available to learn about nucleosynthesis, it's a challenging task to uncover appropriate study materials. In this single site, we present both data and recent research results in a concise and attractive structure. Using tables and charts, the material is presented in a multi-level style. For each of the elements in the periodic table, and for each of the stable isotopes in the chart of the nuclides, the site gives a clear visualization of their corresponding nucleosynthetic origins. As a consequence, the charts afford an insight into the patterns of nucleosynthesis. Moreover, the web site provides the student with an intuition to the relative distributions of those elements. Another important feature of our site is that users have direct access to the tabulated elemental abundances (both theoretical and observed) of stars and meteorites.

  16. Development of an Integrated Natural Barrier Database System for Site Evaluation of a Deep Geologic Repository in Korea - 13527

    SciTech Connect

    Jung, Haeryong; Lee, Eunyong; Jeong, YiYeong; Lee, Jeong-Hwan

    2013-07-01

    Korea Radioactive-waste Management Corporation (KRMC) established in 2009 has started a new project to collect information on long-term stability of deep geological environments on the Korean Peninsula. The information has been built up in the integrated natural barrier database system available on web (www.deepgeodisposal.kr). The database system also includes socially and economically important information, such as land use, mining area, natural conservation area, population density, and industrial complex, because some of this information is used as exclusionary criteria during the site selection process for a deep geological repository for safe and secure containment and isolation of spent nuclear fuel and other long-lived radioactive waste in Korea. Although the official site selection process has not been started yet in Korea, current integrated natural barrier database system and socio-economic database is believed that the database system will be effectively utilized to narrow down the number of sites where future investigation is most promising in the site selection process for a deep geological repository and to enhance public acceptance by providing readily-available relevant scientific information on deep geological environments in Korea. (authors)

  17. Global Land Survey Impervious Mapping Project Web Site

    NASA Technical Reports Server (NTRS)

    DeColstoun, Eric Brown; Phillips, Jacqueline

    2014-01-01

    The Global Land Survey Impervious Mapping Project (GLS-IMP) aims to produce the first global maps of impervious cover at the 30m spatial resolution of Landsat. The project uses Global Land Survey (GLS) Landsat data as its base but incorporates training data generated from very high resolution commercial satellite data and using a Hierarchical segmentation program called Hseg. The web site contains general project information, a high level description of the science, examples of input and output data, as well as links to other relevant projects.

  18. Exploring Multidisciplinary Data Sets through Database Driven Search Capabilities and Map-Based Web Services

    NASA Astrophysics Data System (ADS)

    O'Hara, S.; Ferrini, V.; Arko, R.; Carbotte, S. M.; Leung, A.; Bonczkowski, J.; Goodwillie, A.; Ryan, W. B.; Melkonian, A. K.

    2008-12-01

    Relational databases containing geospatially referenced data enable the construction of robust data access pathways that can be customized to suit the needs of a diverse user community. Web-based search capabilities driven by radio buttons and pull-down menus can be generated on-the-fly leveraging the power of the relational database and providing specialists a means of discovering specific data and data sets. While these data access pathways are sufficient for many scientists, map-based data exploration can also be an effective means of data discovery and integration by allowing users to rapidly assess the spatial co- registration of several data types. We present a summary of data access tools currently provided by the Marine Geoscience Data System (www.marine-geo.org) that are intended to serve a diverse community of users and promote data integration. Basic search capabilities allow users to discover data based on data type, device type, geographic region, research program, expedition parameters, personnel and references. In addition, web services are used to create database driven map interfaces that provide live access to metadata and data files.

  19. Making Web Sites an Effective Recruitment Asset: Content Management Solutions Keep Web Sites Fresh and Relevant--and Students Engaged. Noel-Levitz White Paper

    ERIC Educational Resources Information Center

    Noel-Levitz, Inc, 2009

    2009-01-01

    Have you updated your Web site today? Is it possible that answering "yes" to this simple question is the key to the success of your marketing and recruiting efforts? In the current recruitment arena, the ability to update and maintain this one high-value asset (your Web site) might be the key to the potency of your institutional marketing effort.…

  20. Digging Deeper: The Deep Web.

    ERIC Educational Resources Information Center

    Turner, Laura

    2001-01-01

    Focuses on the Deep Web, defined as Web content in searchable databases of the type that can be found only by direct query. Discusses the problems of indexing; inability to find information not indexed in the search engine's database; and metasearch engines. Describes 10 sites created to access online databases or directly search them. Lists ways…

  1. Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases

    PubMed Central

    2013-01-01

    Background In recent years, a large amount of “-omics” data have been produced. However, these data are stored in many different species-specific databases that are managed by different institutes and laboratories. Biologists often need to find and assemble data from disparate sources to perform certain analyses. Searching for these data and assembling them is a time-consuming task. The Semantic Web helps to facilitate interoperability across databases. A common approach involves the development of wrapper systems that map a relational database schema onto existing domain ontologies. However, few attempts have been made to automate the creation of such wrappers. Results We developed a framework, named BioSemantic, for the creation of Semantic Web Services that are applicable to relational biological databases. This framework makes use of both Semantic Web and Web Services technologies and can be divided into two main parts: (i) the generation and semi-automatic annotation of an RDF view; and (ii) the automatic generation of SPARQL queries and their integration into Semantic Web Services backbones. We have used our framework to integrate genomic data from different plant databases. Conclusions BioSemantic is a framework that was designed to speed integration of relational databases. We present how it can be used to speed the development of Semantic Web Services for existing relational biological databases. Currently, it creates and annotates RDF views that enable the automatic generation of SPARQL queries. Web Services are also created and deployed automatically, and the semantic annotations of our Web Services are added automatically using SAWSDL attributes. BioSemantic is downloadable at http://southgreen.cirad.fr/?q=content/Biosemantic. PMID:23586394

  2. Building Student-Centered Web Sites in the K12 Classroom.

    ERIC Educational Resources Information Center

    Hall, Alison; Basile, Brigitte

    This paper examines the process of constructing a student-centered World Wide Web site and provides recommendations for improving this process. In the project, preservice teachers instructed the fifth grade students about how to design and develop a Web site on weather. The topics of the sessions included Internet ethics, using the Web,…

  3. Pride on the Other Side: The Emergence of LGBT Web Sites for Prospective Students

    ERIC Educational Resources Information Center

    Mathis, Daniel; Tremblay, Christopher

    2010-01-01

    For several decades, colleges have maintained an LGBT Web presence for currently enrolled students. These Web sites inform students about resources, services, events, and staff . They serve as a way to communicate a school's inclusivity and commitment to the LGBT population. Only recently have Web sites specifically targeted for the prospective…

  4. The Role of Virtual Reference in Library Web Site Design: A Qualitative Source for Usage Data

    ERIC Educational Resources Information Center

    Powers, Amanda Clay; Shedd, Julie; Hill, Clay

    2011-01-01

    Gathering qualitative information about usage behavior of library Web sites is a time-consuming process requiring the active participation of patron communities. Libraries that collect virtual reference transcripts, however, hold valuable data regarding how the library Web site is used that could benefit Web designers. An analysis of virtual…

  5. 77 FR 25877 - Amendments to ONRR's Web Site and Mailing Addresses and Payment Definitions

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-02

    ... Office of Natural Resources Revenue 30 CFR Parts 1210 and 1218 RIN 1012-AA10 Amendments to ONRR's Web... of the Code of Federal Regulations (CFR) to chapter XII. This final rule amends Web site and mailing... management functions. II. Explanation of Amendments In this final rule, ONRR merely amends its Web site...

  6. A GIS-Interface Web Site: Exploratory Learning for Geography Curriculum

    ERIC Educational Resources Information Center

    Huang, Kuo Hung

    2011-01-01

    Although Web-based instruction provides learners with sufficient resources for self-paced learning, previous studies have confirmed that browsing navigation-oriented Web sites possibly hampers users' comprehension of information. Web sites designed as "categories of materials" for navigation demand more cognitive effort from users to orient their…

  7. 78 FR 40820 - 60-Day Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-08

    ... Notice of Proposed Information Collection: Exchange Programs Alumni Web Site Registration ACTION: Notice.... ADDRESSES: You may submit comments by any of the following methods: Web: Persons with access to the Internet... of Information Collection: Exchange Programs Alumni Web site Registration OMB Control Number:...

  8. Archiving Web Sites for Preservation and Access: MODS, METS and MINERVA

    ERIC Educational Resources Information Center

    Guenther, Rebecca; Myrick, Leslie

    2006-01-01

    Born-digital material such as archived Web sites provides unique challenges in ensuring access and preservation. This article examines some of the technical challenges involved in harvesting and managing Web archives as well as metadata strategies to provide descriptive, technical, and preservation related information about archived Web sites,…

  9. The Management of the Scientific Information Environment: The Role of the Research Library Web Site.

    ERIC Educational Resources Information Center

    Arte, Assunta

    2001-01-01

    Describes the experiences of the Italian National Research Council Library staff in the successful development and implementation of its Web site. Discusses electronic information sources that interface with the Web site; library services; technical infrastructure; and the choice of a Web-based library management system. (Author/LRW)

  10. Designing a Web Site for One Imaginary Persona that Reflect the Needs of Many

    ERIC Educational Resources Information Center

    Cunningham, Heather

    2005-01-01

    Does designing a large academic library Web site for an imaginary person seem a sensible thing to do? As a reference librarian and member of the Web team of the Gerstein Science Information Centre (Gerstein Library), that is exactly what this author set out to do in May 2005. She proposed that the best way to ensure that the Web site meets the…

  11. NeXO Web: the NeXO ontology database and visualization platform

    PubMed Central

    Dutkowski, Janusz; Ono, Keiichiro; Kramer, Michael; Yu, Michael; Pratt, Dexter; Demchak, Barry; Ideker, Trey

    2014-01-01

    The Network-extracted Ontology (NeXO) is a gene ontology inferred directly from large-scale molecular networks. While most ontologies are constructed through manual expert curation, NeXO uses a principled computational approach which integrates evidence from hundreds of thousands of individual gene and protein interactions to construct a global hierarchy of cellular components and processes. Here, we describe the development of the NeXO Web platform (http://www.nexontology.org)—an online database and graphical user interface for visualizing, browsing and performing term enrichment analysis using NeXO and the gene ontology. The platform applies state-of-the-art web technology and visualization techniques to provide an intuitive framework for investigating biological machinery captured by both data-driven and manually curated ontologies. PMID:24271398

  12. MySQL/PHP web database applications for IPAC proposal submission

    NASA Astrophysics Data System (ADS)

    Crane, Megan K.; Storrie-Lombardi, Lisa J.; Silbermann, Nancy A.; Rebull, Luisa M.

    2008-07-01

    The Infrared Processing and Analysis Center (IPAC) is NASA's multi-mission center of expertise for long-wavelength astrophysics. Proposals for various IPAC missions and programs are ingested via MySQL/PHP web database applications. Proposers use web forms to enter coversheet information and upload PDF files related to the proposal. Upon proposal submission, a unique directory is created on the webserver into which all of the uploaded files are placed. The coversheet information is converted into a PDF file using a PHP extension called FPDF. The files are concatenated into one PDF file using the command-line tool pdftk and then forwarded to the review committee. This work was performed at the California Institute of Technology under contract to the National Aeronautics and Space Administration.

  13. The effects of Web site structure: the role of personal difference.

    PubMed

    Chung, Hwiman; Ahn, Euijin

    2007-12-01

    This study examined the effects of Web site structures in terms of advertising effectiveness- memory, attitude, and behavioral intentions. The primary research question for this study is, What type of Web site (Web ad) structure is most effective? In the pilot study, we tested the difference between two Web site structures, linear and interactive, in terms of traditional advertising effectiveness. Results from the pilot study did not support our research expectations. However, differences in terms of memory were noted between the two structures. After re-creating the Web site based on subjects' comments, in the final experiment, we examined the differences between the two structures and the moderating role of personality difference on the effects of Web site structure. The results confirm that participants' attitude, memory, and behavioral intentions were affected differently by the different Web site structures. However, some research hypotheses were not supported by the current data. PMID:18085961

  14. The PEP-II/BaBar Project-Wide Database using World Wide Web and Oracle*Case

    SciTech Connect

    Chan, A.; Crane, G.; MacGregor, I.; Meyer, S.

    1995-12-01

    The PEP-II/BaBar Project Database is a tool for monitoring the technical and documentation aspects of the accelerator and detector construction. It holds the PEP-II/BaBar design specifications, fabrication and installation data in one integrated system. Key pieces of the database include the machine parameter list, components fabrication and calibration data, survey and alignment data, property control, CAD drawings, publications and documentation. This central Oracle database on a UNIX server is built using Oracle*Case tools. Users at the collaborating laboratories mainly access the data using World Wide Web (WWW). The Project Database is being extended to link to legacy databases required for the operations phase.

  15. Development of genome viewer (Web Omics Viewer) for managing databases of cucumber genome

    NASA Astrophysics Data System (ADS)

    Wojcieszek, M.; RóŻ, P.; Pawełkowicz, M.; Nowak, R.; Przybecki, Z.

    Cucumber is an important plant in horticulture and science world. Sequencing projects of C. sativus genome enable new methodological aproaches in further investigation of this species. Accessibility is crucial to fully exploit obtained information about detail structure of genes, markers and other characteristic features such contigs, scaffolds and chromosomes. Genome viewer is one of tools providing plain and easy way for presenting genome data for users and for databases administration. Gbrowse - the main viewer has several very useful features but lacks in managing simplicity. Our group developed new genome browser Web Omics Viewer (WOV), keeping functionality but improving utilization and accessibility to cucumber genome data.

  16. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

    PubMed

    Quast, Christian; Pruesse, Elmar; Yilmaz, Pelin; Gerken, Jan; Schweer, Timmy; Yarza, Pablo; Peplies, Jörg; Glöckner, Frank Oliver

    2013-01-01

    SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services. The referred database release 111 (July 2012) contains 3 194 778 small subunit and 288 717 large subunit rRNA gene sequences. Since the initial description of the project, substantial new features have been introduced, including advanced quality control procedures, an improved rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. Furthermore, the extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches.

  17. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters

    PubMed Central

    Blanco, Enrique; Farré, Domènec; Albà, M. Mar; Messeguer, Xavier; Guigó, Roderic

    2006-01-01

    Information about the genomic coordinates and the sequence of experimentally identified transcription factor binding sites is found scattered under a variety of diverse formats. The availability of standard collections of such high-quality data is important to design, evaluate and improve novel computational approaches to identify binding motifs on promoter sequences from related genes. ABS () is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography. We have annotated 650 experimental binding sites from 68 transcription factors and 100 orthologous target genes in human, mouse, rat or chicken genome sequences. Computational predictions and promoter alignment information are also provided for each entry. A simple and easy-to-use web interface facilitates data retrieval allowing different views of the information. In addition, the release 1.0 of ABS includes a customizable generator of artificial datasets based on the known sites contained in the collection and an evaluation tool to aid during the training and the assessment of motif-finding programs. PMID:16381947

  18. Mashup of Geo and Space Science Data Provided via Relational Databases in the Semantic Web

    NASA Astrophysics Data System (ADS)

    Ritschel, B.; Seelus, C.; Neher, G.; Iyemori, T.; Koyama, Y.; Yatagai, A. I.; Murayama, Y.; King, T. A.; Hughes, J. S.; Fung, S. F.; Galkin, I. A.; Hapgood, M. A.; Belehaki, A.

    2014-12-01

    The use of RDBMS for the storage and management of geo and space science data and/or metadata is very common. Although the information stored in tables is based on a data model and therefore well organized and structured, a direct mashup with RDF based data stored in triple stores is not possible. One solution of the problem consists in the transformation of the whole content into RDF structures and storage in triple stores. Another interesting way is the use of a specific system/service, such as e.g. D2RQ, for the access to relational database content as virtual, read only RDF graphs. The Semantic Web based -proof of concept- GFZ ISDC uses the triple store Virtuoso for the storage of general context information/metadata to geo and space science satellite and ground station data. There is information about projects, platforms, instruments, persons, product types, etc. available but no detailed metadata about the data granuals itself. Such important information, as e.g. start or end time or the detailed spatial coverage of a single measurement is stored in RDBMS tables of the ISDC catalog system only. In order to provide a seamless access to all available information about the granuals/data products a mashup of the different data resources (triple store and RDBMS) is necessary. This paper describes the use of D2RQ for a Semantic Web/SPARQL based mashup of relational databases used for ISDC data server but also for the access to IUGONET and/or ESPAS and further geo and space science data resources. RDBMS Relational Database Management System RDF Resource Description Framework SPARQL SPARQL Protocol And RDF Query Language D2RQ Accessing Relational Databases as Virtual RDF Graphs GFZ ISDC German Research Centre for Geosciences Information System and Data Center IUGONET Inter-university Upper Atmosphere Global Observation Network (Japanese project) ESPAS Near earth space data infrastructure for e-science (European Union funded project)

  19. OPM database and PPM web server: resources for positioning of proteins in membranes

    PubMed Central

    Lomize, Mikhail A.; Pogozheva, Irina D.; Joo, Hyeon; Mosberg, Henry I.; Lomize, Andrei L.

    2012-01-01

    The Orientations of Proteins in Membranes (OPM) database is a curated web resource that provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization. OPM currently contains more than 1200 transmembrane and peripheral proteins and peptides from approximately 350 organisms that represent approximately 3800 Protein Data Bank entries. Proteins are classified into classes, superfamilies and families and assigned to 21 distinct membrane types. Spatial positions of proteins with respect to the lipid bilayer are optimized by the PPM 2.0 method that accounts for the hydrophobic, hydrogen bonding and electrostatic interactions of the proteins with the anisotropic water-lipid environment described by the dielectric constant and hydrogen-bonding profiles. The OPM database is freely accessible at http://opm.phar.umich.edu. Data can be sorted, searched or retrieved using the hierarchical classification, source organism, localization in different types of membranes. The database offers downloadable coordinates of proteins and peptides with membrane boundaries. A gallery of protein images and several visualization tools are provided. The database is supplemented by the PPM server (http://opm.phar.umich.edu/server.php) which can be used for calculating spatial positions in membranes of newly determined proteins structures or theoretical models. PMID:21890895

  20. "There Is a Lot of Junk on the Web!": Using Web Site Evaluation in an Introductory Religion Course

    ERIC Educational Resources Information Center

    Junior, Nyasha; Edwards, Amy

    2011-01-01

    This essay describes a web site evaluation project which served as the final assignment for an undergraduate "Introduction to Religion" course. The essay discusses lessons learned from the design and implementation of this web-based research assignment over three consecutive semesters. It includes insights from an instructor and a reference…

  1. Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers.

    PubMed

    Heo, Lim; Lee, Hasup; Baek, Minkyung; Seok, Chaok

    2016-01-01

    We introduce two GALAXY web servers called GalaxySite and GalaxyPepDock that predict protein complex structures with small organic compounds and peptides, respectively. GalaxySite predicts ligands that may bind the input protein and generates complex structures of the protein with the predicted ligands from the protein structure given as input or predicted from the input sequence. GalaxyPepDock takes a protein structure and a peptide sequence as input and predicts structures for the protein-peptide complex. Both GalaxySite and GalaxyPepDock rely on available experimentally resolved structures of protein-ligand complexes evolutionarily related to the target. With the continuously increasing size of the protein structure database, the probability of finding related proteins in the database is increasing. The servers further relax the complex structures to refine the structural aspects that are missing in the available structures or that are not compatible with the given protein by optimizing physicochemical interactions. GalaxyPepDock allows conformational change of the protein receptor induced by peptide binding. The atomistic interactions with ligands predicted by the GALAXY servers may offer important clues for designing new molecules or proteins with desired binding properties. PMID:27094284

  2. Uncertainty in site inspection and tracking database estimates of savings

    SciTech Connect

    Sonnenblick, R.; Eto, J.

    1988-12-31

    The authors systematically analyze impact evaluation results of three commercial lighting rebate DSM programs. The research includes (1) analysis of ex ante and ex post estimates of program performance, broken down into critical program parameters: hours of operation, watts saved per measure, and measures installed per site; (2) construction of probability distributions of program performance, both in the aggregate and for these critical program parameters; and (3) use of these analyses and distributions to draw conclusions about the accuracy of savings estimates from a variety of evaluation methods. The analysis suggests that realization rates (a ratio of metered savings estimates to tracking database savings estimates) for the sample of participants they examine are subject to tremendous variability, calling into question the usefulness of a point estimate of the realization rate. Discrepancies in estimates of hours of operation are responsible for most of the uncertainty in the realization rate. Finally, the impact of shorter measure lifetimes on savings estimates suggest that persistence studies should be an evaluation priority.

  3. Web site lets solar scientists inform and inspire students

    NASA Astrophysics Data System (ADS)

    Hauck, Karin

    2012-07-01

    Where on the Web can a middle school girl ask a female solar scientist about solar storms, the course and behavior of charged solar particles, and the origin of the Sun's dynamo—and also find out what the scientist was like as a child, whether the scientist has tattoos or enjoys snowboarding, what she likes and dislikes about her career, and how she balances her energy for work and family life? These kinds of exchanges happen at Solar Week (http://www.solarweek.org; see Figure 1). Established in 2000, Solar Week is an online resource for middle and lower high school students about the science of the Sun, sponsored by the Center for Science Education at the Space Sciences Laboratory (CSE@SSL) at the University of California, Berkeley (UC Berkeley). The Web site's goals are to educate students about the Sun and solar physics and to encourage future careers in science—especially for girls. One way is by giving solar scientists the chance to be relatable role models, to answer students' questions, and to share their experiences in an online forum.

  4. Effects of a social cognitive theory-based hip fracture prevention web site for older adults.

    PubMed

    Nahm, Eun-Shim; Barker, Bausell; Resnick, Barbara; Covington, Barbara; Magaziner, Jay; Brennan, Patricia Flatley

    2010-01-01

    The purposes of this study were to develop a Social Cognitive Theory-based, structured Hip Fracture Prevention Web site for older adults and conduct a preliminary evaluation of its effectiveness. The Theory-based, structured Hip Fracture Prevention Web site is composed of learning modules and a moderated discussion board. A total of 245 older adults recruited from two Web sites and a newspaper advertisement were randomized into the Theory-based, structured Hip Fracture Prevention Web site and the conventional Web sites groups. Outcomes included (1) knowledge (hip fractures and osteoporosis), (2) self-efficacy and outcome expectations, and (3) calcium intake and exercise and were assessed at baseline, end of treatment (2 weeks), and follow-up (3 months). Both groups showed significant improvement in most outcomes. For calcium intake, only the Theory-based, structured Hip Fracture Prevention Web site group showed improvement. None of the group and time interactions were significant. The Theory-based, structured Hip Fracture Prevention Web site group, however, was more satisfied with the intervention. The discussion board usage was significantly correlated with outcome gains. Despite several limitations, the findings showed some preliminary effectiveness of Web-based health interventions for older adults and the use of a Theory-based, structured Hip Fracture Prevention Web site as a sustainable Web structure for online health behavior change interventions. PMID:20978408

  5. Effects of a social cognitive theory-based hip fracture prevention web site for older adults.

    PubMed

    Nahm, Eun-Shim; Barker, Bausell; Resnick, Barbara; Covington, Barbara; Magaziner, Jay; Brennan, Patricia Flatley

    2010-01-01

    The purposes of this study were to develop a Social Cognitive Theory-based, structured Hip Fracture Prevention Web site for older adults and conduct a preliminary evaluation of its effectiveness. The Theory-based, structured Hip Fracture Prevention Web site is composed of learning modules and a moderated discussion board. A total of 245 older adults recruited from two Web sites and a newspaper advertisement were randomized into the Theory-based, structured Hip Fracture Prevention Web site and the conventional Web sites groups. Outcomes included (1) knowledge (hip fractures and osteoporosis), (2) self-efficacy and outcome expectations, and (3) calcium intake and exercise and were assessed at baseline, end of treatment (2 weeks), and follow-up (3 months). Both groups showed significant improvement in most outcomes. For calcium intake, only the Theory-based, structured Hip Fracture Prevention Web site group showed improvement. None of the group and time interactions were significant. The Theory-based, structured Hip Fracture Prevention Web site group, however, was more satisfied with the intervention. The discussion board usage was significantly correlated with outcome gains. Despite several limitations, the findings showed some preliminary effectiveness of Web-based health interventions for older adults and the use of a Theory-based, structured Hip Fracture Prevention Web site as a sustainable Web structure for online health behavior change interventions.

  6. A web-based, relational database for studying glaciers in the Italian Alps

    NASA Astrophysics Data System (ADS)

    Nigrelli, G.; Chiarle, M.; Nuzzi, A.; Perotti, L.; Torta, G.; Giardino, M.

    2013-02-01

    Glaciers are among the best terrestrial indicators of climate change and thus glacier inventories have attracted a growing, worldwide interest in recent years. In Italy, the first official glacier inventory was completed in 1925 and 774 glacial bodies were identified. As the amount of data continues to increase, and new techniques become available, there is a growing demand for computer tools that can efficiently manage the collected data. The Research Institute for Geo-hydrological Protection of the National Research Council, in cooperation with the Departments of Computer Science and Earth Sciences of the University of Turin, created a database that provides a modern tool for storing, processing and sharing glaciological data. The database was developed according to the need of storing heterogeneous information, which can be retrieved through a set of web search queries. The database's architecture is server-side, and was designed by means of an open source software. The website interface, simple and intuitive, was intended to meet the needs of a distributed public: through this interface, any type of glaciological data can be managed, specific queries can be performed, and the results can be exported in a standard format. The use of a relational database to store and organize a large variety of information about Italian glaciers collected over the last hundred years constitutes a significant step forward in ensuring the safety and accessibility of such data. Moreover, the same benefits also apply to the enhanced operability for handling information in the future, including new and emerging types of data formats, such as geographic and multimedia files. Future developments include the integration of cartographic data, such as base maps, satellite images and vector data. The relational database described in this paper will be the heart of a new geographic system that will merge data, data attributes and maps, leading to a complete description of Italian glacial

  7. Creating an Index for Your Web Site to Make Info Easier to See

    ERIC Educational Resources Information Center

    Hedden, Heather

    2006-01-01

    In this article, the author explains how librarians can ensure that their Web site visitors find the information they need. The pros and cons of four options used to help people find information on a Web site are explored. These options are: (1) redesigning the site; (2) creating drop-down, second-level menus for second-level pages; (3) adding a…

  8. End-user perspectives on e-commerce and health care web site quality.

    PubMed

    Le Rouge, Cynthia; De Leo, Gianluca

    2008-01-01

    We explore and compare the importance of various quality dimensions for health care and e-commerce web sites. The results show that the importance of various quality attributes for all except four of ten quality dimensions studied differ between health care and e-commerce web sites. These results can help health care managers to improve and/or to guide the design of their web sites. PMID:18998907

  9. End-user perspectives on e-commerce and health care web site quality.

    PubMed

    Le Rouge, Cynthia; De Leo, Gianluca

    2008-11-06

    We explore and compare the importance of various quality dimensions for health care and e-commerce web sites. The results show that the importance of various quality attributes for all except four of ten quality dimensions studied differ between health care and e-commerce web sites. These results can help health care managers to improve and/or to guide the design of their web sites.

  10. Drinking Water Treatability Database (Database)

    EPA Science Inventory

    The drinking Water Treatability Database (TDB) will provide data taken from the literature on the control of contaminants in drinking water, and will be housed on an interactive, publicly-available USEPA web site. It can be used for identifying effective treatment processes, rec...

  11. Monitoring of small laboratory animal experiments by a designated web-based database.

    PubMed

    Frenzel, T; Grohmann, C; Schumacher, U; Krüll, A

    2015-10-01

    Multiple-parametric small animal experiments require, by their very nature, a sufficient number of animals which may need to be large to obtain statistically significant results.(1) For this reason database-related systems are required to collect the experimental data as well as to support the later (re-) analysis of the information gained during the experiments. In particular, the monitoring of animal welfare is simplified by the inclusion of warning signals (for instance, loss in body weight >20%). Digital patient charts have been developed for human patients but are usually not able to fulfill the specific needs of animal experimentation. To address this problem a unique web-based monitoring system using standard MySQL, PHP, and nginx has been created. PHP was used to create the HTML-based user interface and outputs in a variety of proprietary file formats, namely portable document format (PDF) or spreadsheet files. This article demonstrates its fundamental features and the easy and secure access it offers to the data from any place using a web browser. This information will help other researchers create their own individual databases in a similar way. The use of QR-codes plays an important role for stress-free use of the database. We demonstrate a way to easily identify all animals and samples and data collected during the experiments. Specific ways to record animal irradiations and chemotherapy applications are shown. This new analysis tool allows the effective and detailed analysis of huge amounts of data collected through small animal experiments. It supports proper statistical evaluation of the data and provides excellent retrievable data storage.

  12. Integrated Patient Education on U.S. Hospital Web Sites.

    PubMed

    Huang, Edgar; Wu, Kerong; Edwards, Kelsey

    2016-01-01

    Based on a census of the 2015 Most Wired Hospitals, this content analysis aimed to find out how patient education has been integrated on these best IT hospitals' Web sites to serve the purposes of marketing and meeting online visitors' needs. This study will help hospitals to understand where the weaknesses are in their interactive patient education implementation and come up with a smart integration strategy. The study found that 70% of these hospitals had adopted interactive patient education contents, 76.6% of such contents were from a third-party developer, and only 20% of the hospitals linked their patient education contents to one or more of the hospital's resources while 26% cross-references such contents. The authors concluded that more hospitals should take advantage of modern information communication technology to cross-reference their patient education contents and to integrate such contents into their overall online marketing strategy to benefit patients and themselves.

  13. Integrated Patient Education on U.S. Hospital Web Sites.

    PubMed

    Huang, Edgar; Wu, Kerong; Edwards, Kelsey

    2016-01-01

    Based on a census of the 2015 Most Wired Hospitals, this content analysis aimed to find out how patient education has been integrated on these best IT hospitals' Web sites to serve the purposes of marketing and meeting online visitors' needs. This study will help hospitals to understand where the weaknesses are in their interactive patient education implementation and come up with a smart integration strategy. The study found that 70% of these hospitals had adopted interactive patient education contents, 76.6% of such contents were from a third-party developer, and only 20% of the hospitals linked their patient education contents to one or more of the hospital's resources while 26% cross-references such contents. The authors concluded that more hospitals should take advantage of modern information communication technology to cross-reference their patient education contents and to integrate such contents into their overall online marketing strategy to benefit patients and themselves. PMID:27139406

  14. Tracking changes in search behaviour at a health web site.

    PubMed

    Eklund, Ann-Marie

    2012-01-01

    Nowadays, the internet is used as a means to provide the public with official information on many different topics, including health related matters and care providers. In this work we have studied a search log from the official Swedish health web site 1177.se for patterns of search behaviour over time. To improve the analysis, we mapped the queries to UMLS semantic types and MeSH categories. Our analysis shows that, as expected, diseases and health care activities are the ones of most interest, but also a clear increased interest in geographical locations in the setting of health care providers. We also note a change over time in which kinds of diseases are of interest. Finally, we conclude that this type of analysis may be useful in studies of what health related topics matter to the public, but also for design and follow-up of public information campaigns.

  15. A Tale of Two Web Spaces: Comparing Sites Using Web Impact Factors.

    ERIC Educational Resources Information Center

    Smith, Alastair

    1999-01-01

    Explains the Web impact factor (WIF) for comparing the relative attractiveness or influence of Web spaces, where the WIF is the number of pages linking to a Web space divided by the number of pages in the Web space. Compares WIFs for Australasian universities and for Australasian electronic journals. (Author/LRW)

  16. Analysis of governmental Web sites on food safety issues: a global perspective.

    PubMed

    Namkung, Young; Almanza, Barbara A

    2006-10-01

    Despite a growing concern over food safety issues, as well as a growing dependence on the Internet as a source of information, little research has been done to examine the presence and relevance of food safety-related information on Web sites. The study reported here conducted Web site analysis in order to examine the current operational status of governmental Web sites on food safety issues. The study also evaluated Web site usability, especially information dimensionalities such as utility, currency, and relevance of content, from the perspective of the English-speaking consumer. Results showed that out of 192 World Health Organization members, 111 countries operated governmental Web sites that provide information about food safety issues. Among 171 searchable Web sites from the 111 countries, 123 Web sites (71.9 percent) were accessible, and 81 of those 123 (65.9 percent) were available in English. The majority of Web sites offered search engine tools and related links for more information, but their availability and utility was limited. In terms of content, 69.9 percent of Web sites offered information on foodborne-disease outbreaks, compared with 31.5 percent that had travel- and health-related information.

  17. Analysis of governmental Web sites on food safety issues: a global perspective.

    PubMed

    Namkung, Young; Almanza, Barbara A

    2006-10-01

    Despite a growing concern over food safety issues, as well as a growing dependence on the Internet as a source of information, little research has been done to examine the presence and relevance of food safety-related information on Web sites. The study reported here conducted Web site analysis in order to examine the current operational status of governmental Web sites on food safety issues. The study also evaluated Web site usability, especially information dimensionalities such as utility, currency, and relevance of content, from the perspective of the English-speaking consumer. Results showed that out of 192 World Health Organization members, 111 countries operated governmental Web sites that provide information about food safety issues. Among 171 searchable Web sites from the 111 countries, 123 Web sites (71.9 percent) were accessible, and 81 of those 123 (65.9 percent) were available in English. The majority of Web sites offered search engine tools and related links for more information, but their availability and utility was limited. In terms of content, 69.9 percent of Web sites offered information on foodborne-disease outbreaks, compared with 31.5 percent that had travel- and health-related information. PMID:17066944

  18. How To Succeed in Promoting Your Web Site: The Impact of Search Engine Registration on Retrieval of a World Wide Web Site.

    ERIC Educational Resources Information Center

    Tunender, Heather; Ervin, Jane

    1998-01-01

    Character strings were planted in a World Wide Web site (Project Whistlestop) to test indexing and retrieval rates of five Web search tools (Lycos, infoseek, AltaVista, Yahoo, Excite). It was found that search tools indexed few of the planted character strings, none indexed the META descriptor tag, and only Excite indexed into the 3rd-4th site…

  19. It's Time to Use a Wiki as Part of Your Web Site

    ERIC Educational Resources Information Center

    Ribaric, Tim

    2007-01-01

    Without a doubt, the term "wiki" has leaked into almost every discussion concerning Web 2.0. The real question becomes: Is there a place for a wiki on every library Web site? The answer should be an emphatic "yes." People often praise the wiki because it offers simple page creation and provides instant gratification for amateur Web developers.…

  20. Focus Groups and Usability Testing in Redesigning an Academic Library's Web Site

    ERIC Educational Resources Information Center

    Oldham, Bonnie W.

    2008-01-01

    As the World Wide Web has advanced since its inception, librarians have endeavored to keep pace with this progress in the design of their library Web pages. User recommendations collected from focus groups and usability testing have indicated that the University of Scranton's Weinberg Memorial Library's Web site was not working as intended, and…

  1. Depth-of-processing effects as college students use academic advising Web sites.

    PubMed

    Boatright-Horowitz, Su L; Langley, Michelle; Gunnip, Matthew

    2009-06-01

    This research examined students' cognitive and affective responses to an academic advising Web site. Specifically, we investigated whether exposure to our Web site increased student reports that they would access university Web sites to obtain various types of advising information. A depth-of-processing (DOP) manipulation revealed this effect as students engaged in semantic processing of Web content but not when they engaged in superficial examination of the physical appearance of the same Web site. Students appeared to scan online academic advising materials for information of immediate importance without noticing other information or hyperlinks (e.g., regarding internships and careers). Suggestions are presented for increasing the effectiveness of academic advising Web sites.

  2. Adapting the rangeland database for managing ecological site description data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Field data collection for writing Ecological Data Descriptions (ESD) creates a paperwork burden that reduces efficiency of ESD preparation. The recently developed Rangeland Database and Field Data Entry System is well suited to managing ESD data. This database was developed to automate data entry an...

  3. Assessing cancer treatment related information online: unintended retrieval of complementary and alternative medicine web sites.

    PubMed

    Kim, D Y; Lee, H R; Nam, E M

    2009-01-01

    The aims of this study were to determine the number of Complementary and Alternative Medicine (CAM) web sites retrieved form Korean search engines, and to evaluate the quality of online CAM content. We evaluated results retrieved by the use of the key word 'anticancer treatment' on six common search engines in Korea. Among a total of 651 web sites, 226 web sites (35%) related to CAM were identified. The quality and risk of these sites were assessed for 97 web sites after removing duplicate and dysfunctional web sites. We evaluated the quality of the sites using Sandvik score. Scores in this study varied between 5 and 12 points, with a maximum of 14 points. We categorized the risk score for each web site based on the following criteria: (1) the site discourages the use of conventional medicine (23%: 22/97); (2) the site discourages adherence to the advice of a clinician (15%:15/97); (3) the site either provides opinions and experiences, or factual details (26%: 25/97); and (4) the site provides commercial details (46%: 45/97). The most popular web sites in Korea that relate to CAM for cancer offer information of extremely variable quality. Clinicians should be aware of the risks of inaccurate online information and attempt to protect their patients from those.

  4. Database support for adaptation to climate change: An assessment of web-based portals across scales.

    PubMed

    Sanderson, Hans; Hilden, Mikael; Russel, Duncan; Dessai, Suraje

    2016-10-01

    The widely recognized increase in greenhouse gas emissions is necessitating adaptation to a changing climate, and policies are being developed and implemented worldwide, across sectors, and between government scales globally. The aim of this article is to reflect on one of the major challenges: facilitating and sharing information on the next adaptation practices. Web portals (i.e., web sites) for disseminating information are important tools in meeting this challenge, and therefore, we assessed the characteristics of select major portals across multiple scales. We found that there is a rather limited number of case studies available in the portals-between 900 and 1000 in total-with 95 that include cost information and 195 that include the participation of stakeholders globally. Portals are rarely cited by researchers, suggesting a suboptimal connection between the practical, policy-related, and scientific development of adaptation. The government portals often lack links on search results between US and European Union (EU) web sites, for example. With significant investments and policy development emerging in both the United States and the European Union, there is great potential to share information via portals. Moreover, there is the possibility of better connecting the practical adaptation experience from bottom-up projects to the science of adaptation. Integr Environ Assess Manag 2016;12:627-631. © 2016 SETAC.

  5. Database support for adaptation to climate change: An assessment of web-based portals across scales.

    PubMed

    Sanderson, Hans; Hilden, Mikael; Russel, Duncan; Dessai, Suraje

    2016-10-01

    The widely recognized increase in greenhouse gas emissions is necessitating adaptation to a changing climate, and policies are being developed and implemented worldwide, across sectors, and between government scales globally. The aim of this article is to reflect on one of the major challenges: facilitating and sharing information on the next adaptation practices. Web portals (i.e., web sites) for disseminating information are important tools in meeting this challenge, and therefore, we assessed the characteristics of select major portals across multiple scales. We found that there is a rather limited number of case studies available in the portals-between 900 and 1000 in total-with 95 that include cost information and 195 that include the participation of stakeholders globally. Portals are rarely cited by researchers, suggesting a suboptimal connection between the practical, policy-related, and scientific development of adaptation. The government portals often lack links on search results between US and European Union (EU) web sites, for example. With significant investments and policy development emerging in both the United States and the European Union, there is great potential to share information via portals. Moreover, there is the possibility of better connecting the practical adaptation experience from bottom-up projects to the science of adaptation. Integr Environ Assess Manag 2016;12:627-631. © 2016 SETAC. PMID:26771054

  6. Generic HTML Form Processor: A versatile PHP script to save web-collected data into a MySQL database.

    PubMed

    Göritz, Anja S; Birnbaum, Michael H

    2005-11-01

    The customizable PHP script Generic HTML Form Processor is intended to assist researchers and students in quickly setting up surveys and experiments that can be administered via the Web. This script relieves researchers from the burdens of writing new CGI scripts and building databases for each Web study. Generic HTML Form Processor processes any syntactically correct HTML forminput and saves it into a dynamically created open-source database. We describe five modes for usage of the script that allow increasing functionality but require increasing levels of knowledge of PHP and Web servers: The first two modes require no previous knowledge, and the fifth requires PHP programming expertise. Use of Generic HTML Form Processor is free for academic purposes, and its Web address is www.goeritz.net/brmic.

  7. A list of the most popular smoking cessation web sites and a comparison of their quality.

    PubMed

    Etter, Jean-François

    2006-12-01

    To identify the most popular smoking cessation Web sites and to compare their quality, we conducted an Internet survey of 706 U.S. current and former smokers who had already visited such a Web site. Participants cited 133 different sites and rated their quality. Surprisingly, two of the three most frequently visited Web sites were owned by tobacco companies: Philipmorrisusa.com and its information resource Quit Assist (cited by 15.9% of participants) and the R. J. Reynolds site (5.9%). However, these two sites were not perceived as helpful. The other most frequently visited sites were QuitNet.com (10.1% of all participants), the site of the American Lung Association (5.2%), and Webmd.com (4.4%). All the nine most frequently visited sites, which together attracted 56% of all visitors, ranked at or below average for quality or helpfulness, and together, the three sites with the highest quality ratings received only 7% of all visitors. Only one-third of participants received follow-up e-mails. Thirteen of the 18 most popular Web sites were for-profit, and several sites promoted unproven methods. Two sites ranked above average for quality, and both were nonprofit: Smokefree.gov and Anti-smoking.org. Quitsmoking.About.com ranked above average for helpfulness. Direct competition radically distinguishes Web sites from other smoking cessation services. However, competition resulted in the selection of tobacco companies sites and commercial sites rather than sites of the best quality. In general, users were not very satisfied with smoking cessation Web sites, and they had difficulty finding the best Web sites. Resources were scattered over dozens of Web sites of often mediocre quality that duplicated each other.

  8. Design and implementation of the site and engineering properties database; Yucca Mountain Site Characterzation Project

    SciTech Connect

    Krebs-Jespersen, M.L.

    1992-02-01

    The Yucca Mountain Site Characterization Project (YMP) is conducting studies to determine whether the Yucca Mountain site in southern Nevada will meet regulatory criteria for a potential mined geologic disposal system for high-level radioactive waste. Data gathered as part of these studies must be compiled and tabulated in a controlled manner for use in design and performance analyses. An integrated data management system has been developed to facilitate this process; this system relies on YMP participants to share in the development of the database and to ensure the integrity of the data. The site and Engineering Properties Database (SEPDB) is unique in that, unlike most databases where one data set is stored for use by one defined user, the SEPDB stores different sets of data which must be structured so that a variety of users can be given access to the information. All individuals responsible for activities supporting the license application should, to the extent possible,work with the same data and the same assumptions. For this reason, it is important that these data sets are readily accessible, comprehensive, and current. The SEPDB contains scientific and engineering data for use in performance assessment and design activities. These data sets currently consist of geologic, hydrologic, and rock properties information from drill holes and field measurements. The users of the SEPDB include engineers and scientists from several government research laboratories (Lawrence Livermore National Laboratory, Los Alamos National Laboratory, and Sandia National Laboratories), the US Geological Survey, and several government contractors. This manuscript describes the detailed requirements, contents, design, and status of the SEPDB, the procedures for submitting data to and/or requesting data from the SEPDB, and a SEPDB data dictionary (Appendix A) for defining the present contents.

  9. 76 FR 71914 - Nondiscrimination on the Basis of Disability in Air Travel: Accessibility of Web Sites and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-21

    ... functionality as a directly accessible Web page under WCAG 2.0.'' See 76 FR 59307, 59313 (September 26, 2011... accessibility of ticket agents' Web sites would include Web sites operated by tour operators. See 76 FR 59307... accessibility standards. See 75 FR 43460 (July 26, 2010). Anticipating that ticket agent Web sites may also...

  10. Factors Affecting the Successful Use of Web Sites

    ERIC Educational Resources Information Center

    Matheus, Anne

    2009-01-01

    Every second of every minute of every day, many people search the World Wide Web for information. People are less likely to use hard copy telephone books, encyclopedias, libraries, or other traditional methods of research. They access these traditional resources through web based portals. People use the web to find restaurants, go on vacation, to…

  11. Web Design Matters

    ERIC Educational Resources Information Center

    Mathews, Brian

    2009-01-01

    The web site is a library's most important feature. Patrons use the web site for numerous functions, such as renewing materials, placing holds, requesting information, and accessing databases. The homepage is the place they turn to look up the hours, branch locations, policies, and events. Whether users are at work, at home, in a building, or on…

  12. The New Face of FLUXNET: Redesigning the Web Site and Data Organization to Enhance the User Experience

    NASA Astrophysics Data System (ADS)

    Shanafield, Harold; Shamblin, Stephanie; Devarakonda, Ranjeet; McMurry, Ben; Walker Beaty, Tammy; Wilson, Bruce; Cook, Robert B.

    2011-02-01

    The FLUXNET global network of regional flux tower networks serves to coordinate the regional and global analysis of eddy covariance based CO2, water vapor and energy flux measurements taken at more than 500 sites in continuous long-term operation. The FLUXNET database presently contains information about the location, characteristics, and data availability of each of these sites. To facilitate the coordination and distribution of this information, we redesigned the underlying database and associated web site. We chose the PostgreSQL database as a platform based on its performance, stability and GIS extensions. PostreSQL allows us to enhance our search and presentation capabilities, which will in turn provide increased functionality for users seeking to understand the FLUXNET data. The redesigned database will also significantly decrease the burden of managing such highly varied data. The website is being developed using the Drupal content management system, which provides many community-developed modules and a robust framework for custom feature development. In parallel, we are working with the regional networks to ensure that the information in the FLUXNET database is identical to that in the regional networks. Going forward, we also plan to develop an automated way to synchronize information with the regional networks.

  13. Detection and Prevention of Insider Threats in Database Driven Web Services

    NASA Astrophysics Data System (ADS)

    Chumash, Tzvi; Yao, Danfeng

    In this paper, we take the first step to address the gap between the security needs in outsourced hosting services and the protection provided in the current practice. We consider both insider and outsider attacks in the third-party web hosting scenarios. We present SafeWS, a modular solution that is inserted between server side scripts and databases in order to prevent and detect website hijacking and unauthorized access to stored data. To achieve the required security, SafeWS utilizes a combination of lightweight cryptographic integrity and encryption tools, software engineering techniques, and security data management principles. We also describe our implementation of SafeWS and its evaluation. The performance analysis of our prototype shows the overhead introduced by security verification is small. SafeWS will allow business owners to significantly reduce the security risks and vulnerabilities of outsourcing their sensitive customer data to third-party providers.

  14. Unraveling the web of viroinformatics: computational tools and databases in virus research.

    PubMed

    Sharma, Deepak; Priyadarshini, Pragya; Vrati, Sudhanshu

    2015-02-01

    The beginning of the second century of research in the field of virology (the first virus was discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the birth of a new domain--viroinformatics. The availability of more than 100 Web servers and databases embracing all or specific viruses (for example, dengue virus, influenza virus, hepatitis virus, human immunodeficiency virus [HIV], hemorrhagic fever virus [HFV], human papillomavirus [HPV], West Nile virus, etc.) as well as distinct applications (comparative/diversity analysis, viral recombination, small interfering RNA [siRNA]/short hairpin RNA [shRNA]/microRNA [miRNA] studies, RNA folding, protein-protein interaction, structural analysis, and phylotyping and genotyping) will definitely aid the development of effective drugs and vaccines. However, information about their access and utility is not available at any single source or on any single platform. Therefore, a compendium of various computational tools and resources dedicated specifically to virology is presented in this article.

  15. Secure Web-Site Access with Tickets and Message-Dependent Digests

    USGS Publications Warehouse

    Donato, David I.

    2008-01-01

    Although there are various methods for restricting access to documents stored on a World Wide Web (WWW) site (a Web site), none of the widely used methods is completely suitable for restricting access to Web applications hosted on an otherwise publicly accessible Web site. A new technique, however, provides a mix of features well suited for restricting Web-site or Web-application access to authorized users, including the following: secure user authentication, tamper-resistant sessions, simple access to user state variables by server-side applications, and clean session terminations. This technique, called message-dependent digests with tickets, or MDDT, maintains secure user sessions by passing single-use nonces (tickets) and message-dependent digests of user credentials back and forth between client and server. Appendix 2 provides a working implementation of MDDT with PHP server-side code and JavaScript client-side code.

  16. HapRice, an SNP haplotype database and a web tool for rice.

    PubMed

    Yonemaru, Jun-ichi; Ebana, Kaworu; Yano, Masahiro

    2014-01-01

    Genome-wide single nucleotide polymorphism (SNP) analysis is a promising tool to examine the genetic diversity of rice populations and genetic traits of scientific and economic importance. Next-generation sequencing technology has accelerated the re-sequencing of diverse rice varieties and the discovery of genome-wide SNPs. Notably, validation of these SNPs by a high-throughput genotyping system, such as an SNP array, could provide a manageable and highly accurate SNP set. To enhance the potential utility of genome-wide SNPs for geneticists and breeders, analysis tools need to be developed. Here, we constructed an SNP haplotype database, which allows visualization of the allele frequency of all SNPs in the genome browser. We calculated the allele frequencies of 3,334 SNPs in 76 accessions from the world rice collection and 3,252 SNPs in 177 Japanese rice accessions; all these SNPs have been validated in our previous studies. The SNP haplotypes were defined by the allele frequency in each cultivar group (aus, indica, tropical japonica and temperate japonica) for the world rice accessions, and in non-irrigated and three irrigated groups (three variety registration periods) for Japanese rice accessions. We also developed web tools for finding polymorphic SNPs between any two rice accessions and for the primer design to develop cleaved amplified polymorphic sequence markers at any SNP. The 'HapRice' database and the web tools can be accessed at http://qtaro.abr.affrc.go.jp/index.html. In addition, we established a core SNP set consisting of 768 SNPs uniformly distributed in the rice genome; this set is of a practically appropriate size for use in rice genetic analysis.

  17. Creating patient and family education web sites: assuring accessibility and usability standards.

    PubMed

    Yadrich, Donna Macan; Fitzgerald, Sharon A; Werkowitch, Marilyn; Smith, Carol E

    2012-01-01

    This article gives details about the methods and processes used to ensure that usability and accessibility were achieved during development of the Home Parenteral Nutrition Family Caregivers Web site, an evidence-based health education Web site for the family members and caregivers of chronically ill patients. This article addresses comprehensive definitions of usability and accessibility and illustrates Web site development according to Section 508 standards and the national Health and Human Services' Research-Based Web Design and Usability Guidelines requirements. PMID:22024970

  18. Use of a Web Site to Enhance Criticality Safety Training

    SciTech Connect

    Huang, S T; Morman, J

    2003-08-04

    for future development in the area of web-based training for criticality safety professionals. Our effort is intended to stimulate a discussion of ideas and solicit participation in the development of the next generation of a web-based criticality training site that can be used to assist the training of newcomers to this important safety discipline.

  19. Web Teaching Guide: A Practical Approach to Creating Course Web Sites.

    ERIC Educational Resources Information Center

    Horton, Sarah

    This book outlines an approach to putting course content on the Web. It explains how to make current course materials Web-ready and describes Web-enabled teaching tools that educators may not currently use but that they might wish to incorporate into the teaching approach. The book explains how to combine these materials and tools to create a…

  20. Academic Public Service Web Sites and the Future of Virtual Academic Public Service

    ERIC Educational Resources Information Center

    Cohn, Ellen; Hibbitts, Bernard

    2005-01-01

    Some faculty have started to use the Internet as a bridge to the public instead of merely to each other. Leveraging their specialist knowledge and their academic authority against perceived public needs, they have created another type of academic Web site on their institutional servers--the academic public service Web site (APSWS). APSWS is an…

  1. Analyzing Web Server Logs to Improve a Site's Usage. The Systems Librarian

    ERIC Educational Resources Information Center

    Breeding, Marshall

    2005-01-01

    This column describes ways to streamline and optimize how a Web site works in order to improve both its usability and its visibility. The author explains how to analyze logs and other system data to measure the effectiveness of the Web site design and search engine.

  2. Discovering How Students Search a Library Web Site: A Usability Case Study.

    ERIC Educational Resources Information Center

    Augustine, Susan; Greene, Courtney

    2002-01-01

    Discusses results of a usability study at the University of Illinois Chicago that investigated whether Internet search engines have influenced the way students search library Web sites. Results show students use the Web site's internal search engine rather than navigating through the pages; have difficulty interpreting library terminology; and…

  3. The Path to Graduation: A Model Interactive Web Site Design Supporting Doctoral Students

    ERIC Educational Resources Information Center

    Simmons-Johnson, Nicole

    2012-01-01

    Objective. This 2-phase mixed method study assessed 2nd-year doctoral students' and dissertation students' perceptions of the current Graduate School of Education dissertation support Web site, with implications for designing a model dissertation support Web site. Methods. Phase 1 collected quantitative and qualitative data through an…

  4. Introducing the "Cybercounseling and Cyberlearning" Web Site (cybercounsel.uncg.edu).

    ERIC Educational Resources Information Center

    Walz, Garry R.; Bloom, John W.

    This chapter introduces the "Cybercounseling and Cyberlearning" Web site. It includes a brief description of the following chapters contained in the Web site: (1) "Cybersupervision: Close Encounters in the New Millennium" (D. Coursol and J. Lewis); (2) "Theoretical Tenets of Cybersupervision: Implications and Outcomes" (B. S. Christie); (3) "From…

  5. Interactivity versus Interaction: What Really Matters for State Legislature Web Sites?

    ERIC Educational Resources Information Center

    Ferber, Paul; Foltz, Franz; Pugliese, Rudy

    2005-01-01

    The Internet, not unlike previous communication technologies, has been predicted to dramatically change the nature of democracy. The interactive nature of Web sites, in particular, is seen as the basis for a new cyberdemocracy. Although the definition of interactivity is less than precise, an evaluation of state legislature Web sites finds them…

  6. Card-Sorting Usability Tests of the WMU Libraries' Web Site

    ERIC Educational Resources Information Center

    Whang, Michael

    2008-01-01

    This article describes the card-sorting techniques used by several academic libraries, reports and discusses the results of card-sorting usability tests of the Western Michigan University Libraries' Web site, and reveals how the WMU libraries incorporated the findings into a new Web site redesign, setting the design direction early on. The article…

  7. 21 CFR 1304.50 - Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled...

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 9 2014-04-01 2014-04-01 false Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled substances by means of the Internet. 1304.50 Section 1304... that dispense controlled substances by means of the Internet. For a Web site to identify itself...

  8. 21 CFR 1304.50 - Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled...

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 9 2012-04-01 2012-04-01 false Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled substances by means of the Internet. 1304.50 Section 1304... that dispense controlled substances by means of the Internet. For a Web site to identify itself...

  9. 21 CFR 1304.50 - Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled...

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 9 2011-04-01 2011-04-01 false Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled substances by means of the Internet. 1304.50 Section 1304... that dispense controlled substances by means of the Internet. For a Web site to identify itself...

  10. 21 CFR 1304.50 - Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled...

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 9 2010-04-01 2010-04-01 false Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled substances by means of the Internet. 1304.50 Section 1304... that dispense controlled substances by means of the Internet. For a Web site to identify itself...

  11. 21 CFR 1304.50 - Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled...

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 9 2013-04-01 2013-04-01 false Disclosure requirements for Web sites of nonpharmacy practitioners that dispense controlled substances by means of the Internet. 1304.50 Section 1304... that dispense controlled substances by means of the Internet. For a Web site to identify itself...

  12. 78 FR 76391 - Proposed Enhancements to the Motor Carrier Safety Measurement System (SMS) Public Web Site

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-17

    ...: Background On November 5, 2013 (78 FR 66420), FMCSA published a notice in the Federal Register requesting... System (SMS) Public Web Site AGENCY: Federal Motor Carrier Safety Administration (FMCSA), DOT. ACTION... Safety Measurement System (SMS) public Web site. On December 6, 2013, Advocates ] for Highway and...

  13. A Checklist for Designing and Evaluating Physical Education Program Web Sites

    ERIC Educational Resources Information Center

    Tucker, Michael; Hill, Grant

    2009-01-01

    Creating a physical education department web site is an excellent way to promote a positive image of the program, because students and parents are able to find important information and improve the lines of communication. A well-designed physical education web site can even encourage students to increase their physical activity levels. Improved…

  14. Design Insights and Inspiration from the Tate: What Museum Web Sites Can Offer Us

    ERIC Educational Resources Information Center

    Riley-Huff, Debra A.

    2009-01-01

    There are many similarities between museums and academic libraries as public service institutions. This article is an examination of museum Web site practices and concepts that might also be transferable to academic library Web sites. It explores the digital manifestations of design and information presentation, user engagement, interactivity, and…

  15. Parents' Evaluation of the Usability of a Web Site on Recommended Practices.

    ERIC Educational Resources Information Center

    Cook, Robert S.; Rule, Sarah; Mariger, Heather

    2003-01-01

    This article describes 21 parents' evaluation of a Web site intended to provide practical information about recommended practices such as activity-based or embedded instruction to families whose young children have disabilities or are at developmental risk. The parent group found the Web site, SPIES for Parents, to be helpful, useful, and…

  16. The Electronic Welcome Mat: The Academic Library Web Site as a Marketing and Public Relations Tool

    ERIC Educational Resources Information Center

    Welch, Jeanie M.

    2005-01-01

    This article explores the potential and reality of using the academic library Web site to market library resources and services, for fundraising, and to market special events. It explores such issues as the placement of a link to academic libraries from institutional home pages and the use of a library Web site to include links to news, exhibits,…

  17. Using the Internet as a Tool for Public Service: Creating a Community History Web Site

    ERIC Educational Resources Information Center

    Henson, Darold Leigh

    2005-01-01

    Creating a community history Web site is a way for technical communication practitioners, students, and teachers to improve their expertise while performing a valuable public service. Developers of this kind of Web site combine personal interest in the history and culture of their chosen communities with professional interest in a wide range of…

  18. What Teens Want to Know: Sexual Health Questions Submitted to a Teen Web Site

    ERIC Educational Resources Information Center

    Vickberg, Suzanne M. Johnson; Kohn, Julia E.; Franco, Lydia M.; Criniti, Shannon

    2003-01-01

    In 1999 Planned Parenthood[R] Federation of America (PPFA[R]) launched teenwire.com[SM], a Web site for young people. This study was designed to determine teens' reproductive health information needs. Selected for analysis were 1,219 submissions to the Ask the Experts section of the Web site. Each submission was independently coded by three of the…

  19. Building a Playground: General Guidelines for Creating Educational Web Sites for Children

    PubMed Central

    Meloncon, Lisa; Haynes, Erin; Varelmann, Megan; Groh, Lisa

    2015-01-01

    Purpose Since 2004, the number of children online has increased 18%, compared with a 10% increase in total users. Not only do children represent a growing segment of Internet users, much of what they do online has a specific purpose: education. To help technical communicators create educational Web sites for children, we offer a set of guidelines to direct the design process. Method Nine children participated in a usability test of the CARES Playground, an educational Web site geared toward 7- to 9-year-olds. The site was designed by a group of graduate students in professional writing based on a review of the (admittedly limited) literature dealing with designing Web sites for children. This paper matches common themes from existing literature to the results of the usability tests. Results Since all the information on designing Web sites for children emerged from the literature of designing Web sites for adults, the themes of navigation, appearance, and content are not unfamiliar. However, the interpretation of those common issues for children—as well as the children’s reaction to them—may be surprising. Conclusion Technical communicators need to be conscious and deliberate when designing Web sites for children. To ensure that educational Web sites are able to meet their learning goals, careful consideration of children’s developmental abilities and Web preferences must be considered. We present several guidelines as a starting point, though further research is needed to confirm and expand upon them. PMID:26633909

  20. Human Resource Regulation and Legal Issues: Web Sites for Instructional and Training Development

    ERIC Educational Resources Information Center

    Kohl, John; Mayfield, Milton; Mayfield, Jacqueline

    2004-01-01

    In this article, the authors present a set of useful Web sites for enhancing and supplementing human resource courses and training programs, especially those that deal with the legal and regulatory aspects of the human resources (HR) function. These Web sites provide valuable information on pertinent HR compliance issues as well as information…

  1. Systematically Speaking: How Do Natural History Museum Web Sites Represent Science?

    ERIC Educational Resources Information Center

    Hawkey, Roy

    This paper explores the representation of taxonomy, systematics and other aspects of science on selected natural history museum Web sites, using two different but related approaches. One uses a series of categories relating to the nature of science (derived from an evaluation of exhibitions) and applies these to each Web site. In essence, this…

  2. An Analysis of Dialogistic Presence on Community College Web Sites in Nine Mega-States

    ERIC Educational Resources Information Center

    Shadinger, David Allen

    2010-01-01

    The institutional web site is ubiquitous and has emerged as nearly universal in its utilization as a recruiting and informational tool for the twenty-first century community college. Community colleges have embraced utilization of the Internet through the establishment of institutional web sites containing volumes of information, forms, and links.…

  3. Going beyond Lecturing by Using Student Web Site Presentations in a Human Sexuality Course

    ERIC Educational Resources Information Center

    Hughes, Jennifer L.

    2008-01-01

    This paper discusses the use of Web site presentations in human sexuality courses. Web site presentations are a good way to incorporate additional information about human sexuality into a course, and they provide a way to learn to critique human sexuality material on the Internet. In addition, they help students to practice presentation skills. A…

  4. A usability evaluation exploring the design of American Nurses Association state web sites.

    PubMed

    Alexander, Gregory L; Wakefield, Bonnie J; Anbari, Allison B; Lyons, Vanessa; Prentice, Donna; Shepherd, Marilyn; Strecker, E Bradley; Weston, Marla J

    2014-08-01

    National leaders are calling for opportunities to facilitate the Future of Nursing. Opportunities can be encouraged through state nurses association Web sites, which are part of the American Nurses Association, that are well designed, with appropriate content, and in a language professional nurses understand. The American Nurses Association and constituent state nurses associations provide information about nursing practice, ethics, credentialing, and health on Web sites. We conducted usability evaluations to determine compliance with heuristic and ethical principles for Web site design. We purposefully sampled 27 nursing association Web sites and used 68 heuristic and ethical criteria to perform systematic usability assessments of nurse association Web sites. Web site analysis included seven double experts who were all RNs trained in usability analysis. The extent to which heuristic and ethical criteria were met ranged widely from one state that met 0% of the criteria for "help and documentation" to states that met greater than 92% of criteria for "visibility of system status" and "aesthetic and minimalist design." Suggested improvements are simple yet make an impact on a first-time visitor's impression of the Web site. For example, adding internal navigation and tracking features and providing more details about the application process through help and frequently asked question documentation would facilitate better use. Improved usability will improve effectiveness, efficiency, and consumer satisfaction with these Web sites.

  5. Why We Are Not Google: Lessons from a Library Web Site Usability Study

    ERIC Educational Resources Information Center

    Swanson, Troy A.; Green, Jeremy

    2011-01-01

    In the Fall of 2009, the Moraine Valley Community College Library, using guidelines developed by Jakob Nielsen, conducted a usability study to determine how students were using the library Web site and to inform the redesign of the Web site. The authors found that Moraine Valley's current gateway design was a more effective access point to library…

  6. Web Canary: A Virtualized Web Browser to Support Large-Scale Silent Collaboration in Detecting Malicious Web Sites

    NASA Astrophysics Data System (ADS)

    Wang, Jiang; Ghosh, Anup; Huang, Yih

    Malicious Web content poses a serious threat to the Internet, organizations and users. Current approaches to detecting malicious Web content employ high-powered honey clients to scan the Web for potentially malicious pages. These approaches, while effective at detecting malicious content, have the drawbacks of being few and far between, presenting a single snapshot in time of very dynamic phenomena, and having artificial test data. To address these problems, we developed a virtualized Web browser that uses large-scale collaboration to identify URLs that host malicious content on a continuing basis by building in an elective reporting system. The system, which we call a Web canary, runs a standard Web browser in a known, pristine OS every time the browser starts. Users not only report malicious URLs but also benefit from protection against malicious content. Experimental results show that it can detect the malicious Web pages effectively with acceptable overhead.

  7. Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae

    PubMed Central

    Fujiwara, Shoko; Takatsuka, Yukiko; Hirokawa, Yasutaka; Tsuzuki, Mikio; Takano, Tomoyuki; Kobayashi, Masaaki; Suda, Kunihiro; Asamizu, Erika; Yokoyama, Koji; Shibata, Daisuke; Tabata, Satoshi; Yano, Kentaro

    2016-01-01

    Pleurochrysis is a coccolithophorid genus, which belongs to the Coccolithales in the Haptophyta. The genus has been used extensively for biological research, together with Emiliania in the Isochrysidales, to understand distinctive features between the two coccolithophorid-including orders. However, molecular biological research on Pleurochrysis such as elucidation of the molecular mechanism behind coccolith formation has not made great progress at least in part because of lack of comprehensive gene information. To provide such information to the research community, we built an open web database, the Pleurochrysome (http://bioinf.mind.meiji.ac.jp/phapt/), which currently stores 9,023 unique gene sequences (designated as UNIGENEs) assembled from expressed sequence tag sequences of P. haptonemofera as core information. The UNIGENEs were annotated with gene sequences sharing significant homology, conserved domains, Gene Ontology, KEGG Orthology, predicted subcellular localization, open reading frames and orthologous relationship with genes of 10 other algal species, a cyanobacterium and the yeast Saccharomyces cerevisiae. This sequence and annotation information can be easily accessed via several search functions. Besides fundamental functions such as BLAST and keyword searches, this database also offers search functions to explore orthologous genes in the 12 organisms and to seek novel genes. The Pleurochrysome will promote molecular biological and phylogenetic research on coccolithophorids and other haptophytes by helping scientists mine data from the primary transcriptome of P. haptonemofera. PMID:26746174

  8. Soil food web changes during spontaneous succession at post mining sites: a possible ecosystem engineering effect on food web organization?

    PubMed

    Frouz, Jan; Thébault, Elisa; Pižl, Václav; Adl, Sina; Cajthaml, Tomáš; Baldrián, Petr; Háněl, Ladislav; Starý, Josef; Tajovský, Karel; Materna, Jan; Nováková, Alena; de Ruiter, Peter C

    2013-01-01

    Parameters characterizing the structure of the decomposer food web, biomass of the soil microflora (bacteria and fungi) and soil micro-, meso- and macrofauna were studied at 14 non-reclaimed 1- 41-year-old post-mining sites near the town of Sokolov (Czech Republic). These observations on the decomposer food webs were compared with knowledge of vegetation and soil microstructure development from previous studies. The amount of carbon entering the food web increased with succession age in a similar way as the total amount of C in food web biomass and the number of functional groups in the food web. Connectance did not show any significant changes with succession age, however. In early stages of the succession, the bacterial channel dominated the food web. Later on, in shrub-dominated stands, the fungal channel took over. Even later, in the forest stage, the bacterial channel prevailed again. The best predictor of fungal bacterial ratio is thickness of fermentation layer. We argue that these changes correspond with changes in topsoil microstructure driven by a combination of plant organic matter input and engineering effects of earthworms. In early stages, soil is alkaline, and a discontinuous litter layer on the soil surface promotes bacterial biomass growth, so the bacterial food web channel can dominate. Litter accumulation on the soil surface supports the development of the fungal channel. In older stages, earthworms arrive, mix litter into the mineral soil and form an organo-mineral topsoil, which is beneficial for bacteria and enhances the bacterial food web channel.

  9. Evaluation of physical activity web sites for use of behavior change theories.

    PubMed

    Doshi, Amol; Patrick, Kevin; Sallis, James F; Calfas, Karen

    2003-01-01

    Physical activity (PA) Web sites were assessed for their use of behavior change theories, including constructs of the health belief model, Transtheoretical Model, social cognitive theory, and the theory of reasoned action and planned behavior. An evaluation template for assessing PA Web sites was developed, and content validity and interrater reliability were demonstrated. Two independent raters evaluated 24 PA Web sites. Web sites varied widely in application of theory-based constructs, ranging from 5 to 48 on a 100-point scale. The most common intervention strategies were general information, social support, and realistic goal areas. Coverage of theory-based strategies was low, varying from 26% for social cognitive theory to 39% for health belief model. Overall, PA Web sites provided little assessment, feedback, or individually tailored assistance for users. They were unable to substantially tailor the on-line experience for users at different stages of change or different demographic characteristics.

  10. IMGT-ONTOLOGY and IMGT databases, tools and Web resources for immunogenetics and immunoinformatics.

    PubMed

    Lefranc, Marie-Paule

    2004-01-01

    The international ImMunoGeneTics information system (IMGT; http://imgt.cines.fr), is a high quality integrated information system specialized in immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates, created in 1989, by the Laboratoire d'ImmunoGénétique Moléculaire (LIGM; Université Montpellier II and CNRS) at Montpellier, France. IMGT provides a common access to standardized data which include nucleotide and protein sequences, oligonucleotide primers, gene maps, genetic polymorphisms, specificities, 2D and 3D structures. IMGT consists of several sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), one genome database (IMGT/GENE-DB) and one 3D structure database (IMGT/3Dstructure-DB), interactive tools for sequence analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis (IMGT/StructuralQuery), and Web resources ("IMGT Marie-Paule page") comprising 8000 HTML pages. IMGT other accesses include SRS, FTP, search by BLAST, etc. By its high quality and its easy data distribution, IMGT has important implications in medical research (repertoire in autoimmune diseases, AIDS, leukemias, lymphomas, myelomas), veterinary research, genome diversity and genome evolution studies of the adaptive immune responses, biotechnology related to antibody engineering (single chain Fragment variable (scFv), phage displays, combinatorial libraries) and therapeutical approaches (grafts, immunotherapy). IMGT is freely available at http://imgt.cines.fr.

  11. Salt marsh hydrology data web site facilitates research

    NASA Astrophysics Data System (ADS)

    Gardner, L. R.; Reeves, H. W.

    The interface between maritime forests and inter-tidal salt marshes along the southeastern coast of the United States is a major ecological boundary characterized by a sequence of botanical zones that typically consist of pine/ oak forest>Iva>Juncus>Salicornia>Spartina. In addition to questions regarding the physical and chemical factors that govern this ecotone, this interface is of interest because of the potential for groundwater flow to transfer nutrients and pollutants from developed uplands to the adjacent marshes. The interface is also of interest because it is presumably migrating upslope as a result of ongoing sea level rise and concomitant aquifer salinization.A new Web site, http://links.baruch.sc.edu/data/GRNDWATER/data/data.htm, contains long-term and spatially dense measurements of groundwater heads and salinity from a network of nested piezometers that has been installed along three forest-marsh transects across the Crab Haul Creek finger marsh basin at the North Inlet-Winyah Bay National Estuarine Research Reserve in Georgetown County South Carolina (Figure 1).

  12. Using Web sites on quality health care for teaching consumers in public libraries.

    PubMed

    Oermann, Marilyn H; Lesley, Marsha L; VanderWal, Jillon S

    2005-01-01

    More and more consumers are searching the Internet for health information. Health Web sites vary in quality, though, and not all consumers are aware of the need to evaluate the information they find on the Web. Nurses and other health providers involved in patient education can evaluate Web sites and suggest quality sites for patients to use. This article describes a project we implemented in 2 public libraries to educate consumers about quality health care and patient safety using Web sites that we had evaluated earlier. Participants (n = 103) completed resources on health care quality, questions patients should ask about their diagnoses and treatment options, changes in Medicare and Medicare options or ways to make their health benefits work for them, and tips to help prevent medical errors. Most consumers were highly satisfied with the Web sites and the information they learned on quality care from these resources. Many participants did not have Internet access at home or work and instead used the library to search the Web. Information about the Web sites used in this project and other sites on quality care can be made available in libraries and community settings and as part of patient education resources in hospitals. The Web provides easy access for consumers to information about patient safety initiatives and health care quality in general.

  13. Development of a web database portfolio system with PACS connectivity for undergraduate health education and continuing professional development.

    PubMed

    Ng, Curtise K C; White, Peter; McKay, Janice C

    2009-04-01

    Increasingly, the use of web database portfolio systems is noted in medical and health education, and for continuing professional development (CPD). However, the functions of existing systems are not always aligned with the corresponding pedagogy and hence reflection is often lost. This paper presents the development of a tailored web database portfolio system with Picture Archiving and Communication System (PACS) connectivity, which is based on the portfolio pedagogy. Following a pre-determined portfolio framework, a system model with the components of web, database and mail servers, server side scripts, and a Query/Retrieve (Q/R) broker for conversion between Hypertext Transfer Protocol (HTTP) requests and Q/R service class of Digital Imaging and Communication in Medicine (DICOM) standard, is proposed. The system was piloted with seventy-seven volunteers. A tailored web database portfolio system (http://radep.hti.polyu.edu.hk) was developed. Technological arrangements for reinforcing portfolio pedagogy include popup windows (reminders) with guidelines and probing questions of 'collect', 'select' and 'reflect' on evidence of development/experience, limitation in the number of files (evidence) to be uploaded, the 'Evidence Insertion' functionality to link the individual uploaded artifacts with reflective writing, capability to accommodate diversity of contents and convenient interfaces for reviewing portfolios and communication. Evidence to date suggests the system supports users to build their portfolios with sound hypertext reflection under a facilitator's guidance, and with reviewers to monitor students' progress providing feedback and comments online in a programme-wide situation.

  14. Teradata University Network: A No Cost Web-Portal for Teaching Database, Data Warehousing, and Data-Related Subjects

    ERIC Educational Resources Information Center

    Jukic, Nenad; Gray, Paul

    2008-01-01

    This paper describes the value that information systems faculty and students in classes dealing with database management, data warehousing, decision support systems, and related topics, could derive from the use of the Teradata University Network (TUN), a free comprehensive web-portal. A detailed overview of TUN functionalities and content is…

  15. A Web-Based Multi-Database System Supporting Distributed Collaborative Management and Sharing of Microarray Experiment Information

    PubMed Central

    Burgarella, Sarah; Cattaneo, Dario; Masseroli, Marco

    2006-01-01

    We developed MicroGen, a multi-database Web based system for managing all the information characterizing spotted microarray experiments. It supports information gathering and storing according to the Minimum Information About Microarray Experiments (MIAME) standard. It also allows easy sharing of information and data among all multidisciplinary actors involved in spotted microarray experiments. PMID:17238488

  16. The Common Gateway Interface (CGI) for Enhancing Access to Database Servers via the World Wide Web (WWW).

    ERIC Educational Resources Information Center

    Machovec, George S., Ed.

    1995-01-01

    Explains the Common Gateway Interface (CGI) protocol as a set of rules for passing information from a Web server to an external program such as a database search engine. Topics include advantages over traditional client/server solutions, limitations, sample library applications, and sources of information from the Internet. (LRW)

  17. Designing for the Student: Users' Styles and Department Web Sites

    ERIC Educational Resources Information Center

    Hall, Trevor; Jensen, Ryan; McLean, Daniel

    2008-01-01

    Academic department Web pages are important tools commonly used to inform students. However, little research has been done to determine what kinds of information students value on department Web pages. Trevor Hall, Ryan Jensen, and Daniel McLean examine how 65 undergraduate students value information that is typically placed on department Web…

  18. Scrutinizing the Cybersell: Teen-Targeted Web Sites as Texts

    ERIC Educational Resources Information Center

    Crovitz, Darren

    2007-01-01

    Darren Crovitz explains that the explosive growth of Web-based content and communication in recent years compels us to teach students how to examine the "rhetorical nature and ethical dimensions of the online world." He demonstrates successful approaches to accomplish this goal through his analysis of the selling techniques of two Web sites…

  19. A community effort to construct a gravity database for the United States and an associated Web portal

    USGS Publications Warehouse

    Keller, Gordon R.; Hildenbrand, T.G.; Kucks, R.; Webring, M.; Briesacher, A.; Rujawitz, K.; Hittleman, A.M.; Roman, D.R.; Winester, D.; Aldouri, R.; Seeley, J.; Rasillo, J.; Torres, R.; Hinze, W. J.; Gates, A.; Kreinovich, V.; Salayandia, L.

    2006-01-01

    Potential field data (gravity and magnetic measurements) are both useful and costeffective tools for many geologic investigations. Significant amounts of these data are traditionally in the public domain. A new magnetic database for North America was released in 2002, and as a result, a cooperative effort between government agencies, industry, and universities to compile an upgraded digital gravity anomaly database, grid, and map for the conterminous United States was initiated and is the subject of this paper. This database is being crafted into a data system that is accessible through a Web portal. This data system features the database, software tools, and convenient access. The Web portal will enhance the quality and quantity of data contributed to the gravity database that will be a shared community resource. The system's totally digital nature ensures that it will be flexible so that it can grow and evolve as new data, processing procedures, and modeling and visualization tools become available. Another goal of this Web-based data system is facilitation of the efforts of researchers and students who wish to collect data from regions currently not represented adequately in the database. The primary goal of upgrading the United States gravity database and this data system is to provide more reliable data that support societal and scientific investigations of national importance. An additional motivation is the international intent to compile an enhanced North American gravity database, which is critical to understanding regional geologic features, the tectonic evolution of the continent, and other issues that cross national boundaries. ?? 2006 Geological Society of America. All rights reserved.

  20. Comparing communication technology on Chinese, English, and Spanish diabetes web sites.

    PubMed Central

    Michea, Yanko F.; Pancheri, Karen; Gong, Yang; Bernstam, Elmer

    2002-01-01

    Technological and cultural factors influence access to health information on the web in multifarious ways. We evaluated structural differences and availability of communication services on the web in three diverse language and cultural groups: Chinese, English, and Spanish. A total of 382 web sites were analyzed: 144 were English language sites (38%), 129 were Chinese language sites (34%), and 108 were Spanish language sites (28%). We did not find technical differences in the number of outgoing links per domain or the total availability of communication services between the three groups. There were differences in the distribution of available services between Chinese and English sites. In the Chinese sites, there were more communication services between consumers and health experts. Our results suggest that the health-related web presence of these three cultural groups is technologically comparable, but reflects differences that may be attributable to cultural factors. PMID:12463879

  1. Developing and evaluating the GriefLink web site: processes, protocols, dilemmas and lessons learned.

    PubMed

    Clark, Sheila; Burgess, Teresa; Laven, Gillian; Bull, Michael; Marker, Julie; Browne, Eric

    2004-12-01

    Despite a profusion of recommendations regarding the quality of web sites and guidelines related to ethical issues surrounding health-related sites, there is little guidance for the design and evaluation of sites relating to loss and grief. This article, which addresses these deficiencies, results from a community consultation process of designing and evaluating a web site--GriefLink--for bereaved consumers and for the professionals who help them. It presents the literature review that informed the project, the recommendations for design and content, the lessons learned through the process itself, and the difficulties of evaluating the benefits of a grief-related web site. Some ethical and legal dilemmas in developing grief-related web sites are discussed and issues of design, content, process, evaluation, and general features are addressed, which may also be applied to other communication forms for loss and grief matters, such as the print media.

  2. Go ahead, visit those web sites, you can`t get hurt, can you?

    SciTech Connect

    Rothfuss, J.S.; Parrett, J.W.

    1997-02-01

    Browsing (surfing) the World Wide Web (the web) has exploded onto the Internet with an unprecedented popularity. Fueled by massive acceptance, the web client/server technology is leaping forward with a speed that competes with no other software technology. The primary force behind this phenomenon is the simplicity of the web browsing experience. People who have never touched a computer before can now perform sophisticated network tasks with a simple point-and-click. Unfortunately, this simplicity gives many, if not most, web wanderers the impression that the web browser is risk free, nothing more than a high powered television. This misconception is dangerous by creating the myth that a user visiting a web site is immune from subversive or malicious intent. While many want you to believe that surfing the web is as simple as using any other household appliance, it is not like surfing television channels, it is bi-directional. You can learn a lot of useful information from web sites. But, either directly or indirectly, others can also learn quite a bit about you. Of even more concern is a web sites` potential ability to exert control over the local computer. This paper tries to consolidate some of the current concerns that you should consider as you jump into the surf.

  3. iScreen: world's first cloud-computing web server for virtual screening and de novo drug design based on TCM database@Taiwan.

    PubMed

    Tsai, Tsung-Ying; Chang, Kai-Wei; Chen, Calvin Yu-Chian

    2011-06-01

    The rapidly advancing researches on traditional Chinese medicine (TCM) have greatly intrigued pharmaceutical industries worldwide. To take initiative in the next generation of drug development, we constructed a cloud-computing system for TCM intelligent screening system (iScreen) based on TCM Database@Taiwan. iScreen is compacted web server for TCM docking and followed by customized de novo drug design. We further implemented a protein preparation tool that both extract protein of interest from a raw input file and estimate the size of ligand bind site. In addition, iScreen is designed in user-friendly graphic interface for users who have less experience with the command line systems. For customized docking, multiple docking services, including standard, in-water, pH environment, and flexible docking modes are implemented. Users can download first 200 TCM compounds of best docking results. For TCM de novo drug design, iScreen provides multiple molecular descriptors for a user's interest. iScreen is the world's first web server that employs world's largest TCM database for virtual screening and de novo drug design. We believe our web server can lead TCM research to a new era of drug development. The TCM docking and screening server is available at http://iScreen.cmu.edu.tw/. PMID:21647737

  4. DNAVaxDB: the first web-based DNA vaccine database and its data analysis.

    PubMed

    Racz, Rebecca; Li, Xinna; Patel, Mukti; Xiang, Zuoshuang; He, Yongqun

    2014-01-01

    Since the first DNA vaccine studies were done in the 1990s, thousands more studies have followed. Here we report the development and analysis of DNAVaxDB (http://www.violinet.org/dnavaxdb), the first publically available web-based DNA vaccine database that curates, stores, and analyzes experimentally verified DNA vaccines, DNA vaccine plasmid vectors, and protective antigens used in DNA vaccines. All data in DNAVaxDB are annotated from reliable resources, particularly peer-reviewed articles. Among over 140 DNA vaccine plasmids, some plasmids were more frequently used in one type of pathogen than others; for example, pCMVi-UB for G- bacterial DNA vaccines, and pCAGGS for viral DNA vaccines. Presently, over 400 DNA vaccines containing over 370 protective antigens from over 90 infectious and non-infectious diseases have been curated in DNAVaxDB. While extracellular and bacterial cell surface proteins and adhesin proteins were frequently used for DNA vaccine development, the majority of protective antigens used in Chlamydophila DNA vaccines are localized to the inner portion of the cell. The DNA vaccine priming, other vaccine boosting vaccination regimen has been widely used to induce protection against infection of different pathogens such as HIV. Parasitic and cancer DNA vaccines were also systematically analyzed. User-friendly web query and visualization interfaces are available in DNAVaxDB for interactive data search. To support data exchange, the information of DNA vaccines, plasmids, and protective antigens is stored in the Vaccine Ontology (VO). DNAVaxDB is targeted to become a timely and vital source of DNA vaccines and related data and facilitate advanced DNA vaccine research and development.

  5. Fan Database and Web-tool for Choosing Quieter Spaceflight Fans

    NASA Technical Reports Server (NTRS)

    Allen, Christopher S.; Burnside, Nathan J.

    2007-01-01

    One critical aspect of designing spaceflight hardware is the selection of fans to provide the necessary cooling. And with efforts to minimize cost and the tendancy to be conservative with the amount of cooling provided, it is easy to choose an overpowered fan. One impact of this is that the fan uses more energy than is necessary. But, the more significant impact is that the hardware produces much more acoustic noise than if an optimal fan was chosen. Choosing the right fan for a specific hardware application is no simple task. It requires knowledge of cooling requirements and various fan performance characteristics as well as knowledge of the aerodynamic losses of the hardware in which the fan is to be installed. Knowledge of the acoustic emissions of each fan as a function of operating condition is also required in order to choose a quieter fan for a given design point. The purpose of this paper is to describe a database and design-tool that have been developed to aid spaceflight hardware developers in choosing a fan for their application that is based on aerodynamic performance and reduced acoustic emissions as well. This web-based-tool provides a limited amount of fan-data, provides a method for selecting a fan based on its projected operating point, and also provides a method for comparing and contrasting aerodynamic performance and acoustic data from different fans. Drill-down techniques are used to display details of the spectral noise characteristics of the fan at specific operation conditions. The fan aerodynamic and acoustic data were acquired at Ames Research Center in the Experimental Aero-Physics Branch's Anechoic Chamber. Acoustic data were acquired according to ANSI Standard S12.11-1987, "Method for the Measurement of Noise Emitted by Small Air-Moving Devices." One significant improvement made to this technique included automation that allows for a significant increase in flow-rate resolution. The web-tool was developed at Johnson Space Center and is

  6. De novo transcriptome assembly of a fern, Lygodium japonicum, and a web resource database, Ljtrans DB.

    PubMed

    Aya, Koichiro; Kobayashi, Masaaki; Tanaka, Junmu; Ohyanagi, Hajime; Suzuki, Takayuki; Yano, Kenji; Takano, Tomoyuki; Yano, Kentaro; Matsuoka, Makoto

    2015-01-01

    During plant evolution, ferns originally evolved as a major vascular plant with a distinctive life cycle in which the haploid and diploid generations are completely separated. However, the low level of genetic resources has limited studies of their physiological events, as well as hindering research on the evolutionary history of land plants. In this study, to identify a comprehensive catalog of transcripts and characterize their expression traits in the fern Lygodium japonicum, nine different RNA samples isolated from prothalli, trophophylls, rhizomes and sporophylls were sequenced using Roche 454 GS-FLX and Illumina HiSeq sequencers. The hybrid assembly of the high-quality 454 GS-FLX and Illumina HiSeq reads generated a set of 37,830 isoforms with an average length of 1,444 bp. Using four open reading frame (ORF) predictors, 38,142 representative ORFs were identified from a total of 37,830 transcript isoforms and 95 contigs, which were annotated by searching against several public databases. Furthermore, an orthoMCL analysis using the protein sequences of L. japonicum and five model plants revealed various sets of lineage-specific genes, including those detected among land plant lineages and those detected in only L. japonicum. We have also examined the expression patterns of all contigs/isoforms, along with the life cycle of L. japonicum, and identified the tissue-specific transcripts using statistical expression analyses. Finally, we developed a public web resource, the L. japonicum transcriptome database at http://bioinf.mind.meiji.ac.jp/kanikusa/, which provides important opportunities to accelerate molecular research in ferns.

  7. Hand Society and Matching Program Web Sites Provide Poor Access to Information Regarding Hand Surgery Fellowship.

    PubMed

    Hinds, Richard M; Klifto, Christopher S; Naik, Amish A; Sapienza, Anthony; Capo, John T

    2016-08-01

    The Internet is a common resource for applicants of hand surgery fellowships, however, the quality and accessibility of fellowship online information is unknown. The objectives of this study were to evaluate the accessibility of hand surgery fellowship Web sites and to assess the quality of information provided via program Web sites. Hand fellowship Web site accessibility was evaluated by reviewing the American Society for Surgery of the Hand (ASSH) on November 16, 2014 and the National Resident Matching Program (NRMP) fellowship directories on February 12, 2015, and performing an independent Google search on November 25, 2014. Accessible Web sites were then assessed for quality of the presented information. A total of 81 programs were identified with the ASSH directory featuring direct links to 32% of program Web sites and the NRMP directory directly linking to 0%. A Google search yielded direct links to 86% of program Web sites. The quality of presented information varied greatly among the 72 accessible Web sites. Program description (100%), fellowship application requirements (97%), program contact email address (85%), and research requirements (75%) were the most commonly presented components of fellowship information. Hand fellowship program Web sites can be accessed from the ASSH directory and, to a lesser extent, the NRMP directory. However, a Google search is the most reliable method to access online fellowship information. Of assessable programs, all featured a program description though the quality of the remaining information was variable. Hand surgery fellowship applicants may face some difficulties when attempting to gather program information online. Future efforts should focus on improving the accessibility and content quality on hand surgery fellowship program Web sites.

  8. Hand Society and Matching Program Web Sites Provide Poor Access to Information Regarding Hand Surgery Fellowship.

    PubMed

    Hinds, Richard M; Klifto, Christopher S; Naik, Amish A; Sapienza, Anthony; Capo, John T

    2016-08-01

    The Internet is a common resource for applicants of hand surgery fellowships, however, the quality and accessibility of fellowship online information is unknown. The objectives of this study were to evaluate the accessibility of hand surgery fellowship Web sites and to assess the quality of information provided via program Web sites. Hand fellowship Web site accessibility was evaluated by reviewing the American Society for Surgery of the Hand (ASSH) on November 16, 2014 and the National Resident Matching Program (NRMP) fellowship directories on February 12, 2015, and performing an independent Google search on November 25, 2014. Accessible Web sites were then assessed for quality of the presented information. A total of 81 programs were identified with the ASSH directory featuring direct links to 32% of program Web sites and the NRMP directory directly linking to 0%. A Google search yielded direct links to 86% of program Web sites. The quality of presented information varied greatly among the 72 accessible Web sites. Program description (100%), fellowship application requirements (97%), program contact email address (85%), and research requirements (75%) were the most commonly presented components of fellowship information. Hand fellowship program Web sites can be accessed from the ASSH directory and, to a lesser extent, the NRMP directory. However, a Google search is the most reliable method to access online fellowship information. Of assessable programs, all featured a program description though the quality of the remaining information was variable. Hand surgery fellowship applicants may face some difficulties when attempting to gather program information online. Future efforts should focus on improving the accessibility and content quality on hand surgery fellowship program Web sites. PMID:27625537

  9. Evaluation of WebEase: An Epilepsy Self-Management Web Site

    ERIC Educational Resources Information Center

    DiIorio, Colleen; Escoffery, Cam; McCarty, Frances; Yeager, Katherine A.; Henry, Thomas R.; Koganti, Archana; Reisinger, Elizabeth L.; Wexler, Bethany

    2009-01-01

    People with epilepsy have various education needs and must adopt many self-management behaviors in order to control their condition. This study evaluates WebEase, an Internet-based, theory-driven, self-management program for adults with epilepsy. Thirty-five participants took part in a 6-week pilot implementation of WebEase. The main components of…

  10. Phenosite: a web database integrating the mouse phenotyping platform and the experimental procedures in mice.

    PubMed

    Masuya, Hiroshi; Yoshikawa, Sumi; Heida, Naohiko; Toyoda, Tetsuro; Wakana, Shigeharu; Shiroishi, Toshihiko

    2007-12-01

    Recently, a number of collaborative large-scale mouse mutagenesis programs have been launched. These programs aim for a better understanding of the roles of all individual coding genes and the biological systems in which these genes participate. In international efforts to share phenotypic data among facilities/institutes, it is desirable to integrate information obtained from different phenotypic platforms reliably. Since the definitions of specific phenotypes often depend on a tacit understanding of concepts that tends to vary among different facilities, it is necessary to define phenotypes based on the explicit evidence of assay results. We have developed a website termed PhenoSITE (Phenome Semantics Information with Terminology of Experiments: http://www.gsc.riken.jp/Mouse/), in which we are trying to integrate phenotype-related information using an experimental-evidence-based approach. The site's features include (1) a baseline database for our phenotyping platform; (2) an ontology associating international phenotypic definitions with experimental terminologies used in our phenotyping platform; (3) a database for standardized operation procedures of the phenotyping platform; and (4) a database for mouse mutants using data produced from the large-scale mutagenesis program at RIKEN GSC. We have developed two types of integrated viewers to enhance the accessibility to mutant resource information. One viewer depicts a matrix view of the ontology-based classification and chromosomal location of each gene; the other depicts ontology-mediated integration of experimental protocols, baseline data, and mutant information. These approaches rely entirely upon experiment-based evidence, ensuring the reliability of the integrated data from different phenotyping platforms.

  11. SITES 2006 User Guide for the International Database. Second Information Technology in Education Study

    ERIC Educational Resources Information Center

    Brese, Falk, Ed.; Carstens, Ralph, Ed.

    2009-01-01

    To support and promote secondary analyses, the International Association for the Evaluation of Educational Achievement (IEA) is making the SITES 2006 international database and accompanying User Guide available to researchers, analysts, and public users. The database comprises national contexts and school- and teacher-level data from 23 education…

  12. StarvingforPerfect.com: a theoretically based content analysis of pro-eating disorder Web sites.

    PubMed

    Lapinski, Maria Knight

    2006-01-01

    Like traditional media, information on the World Wide Web may encourage both healthy and unhealthy behaviors. This study reports on the content analysis of a particular genre of Web site that promotes unhealthy behaviors: pro-eating disorder Web sites. Framed in message design theory, the results of this study indicate that messages on pro-eating disorder Web sites promote response efficacy in continuing disordered behaviors, but messages promoting severity and susceptibility to weight gain and self-efficacy were not common. Given the importance of combining response and self-efficacy messages for maximal effectiveness of messages, the pro-eating disorder sites may have limited effectiveness in effecting behavioral change among site visitors.

  13. Consumer trust to a Web site: moderating effect of attitudes toward online shopping.

    PubMed

    San Martín, Sonia; Camarero, Carmen

    2008-10-01

    In this paper, authors suggest a model that reflects the role played by the Web site characteristics and the previous level of satisfaction as determinant factors of trust in the Web site. Also, authors consider the moderating effects of consumers' motives and inhibitors to purchase online. Results show that satisfaction with previous purchases, the Web site security and privacy policies, and service quality are the main determinants of trust. Also, the motives and inhibitors the individuals perceive when buying online determine the type of signals they consider to trust.

  14. Consumer trust to a Web site: moderating effect of attitudes toward online shopping.

    PubMed

    San Martín, Sonia; Camarero, Carmen

    2008-10-01

    In this paper, authors suggest a model that reflects the role played by the Web site characteristics and the previous level of satisfaction as determinant factors of trust in the Web site. Also, authors consider the moderating effects of consumers' motives and inhibitors to purchase online. Results show that satisfaction with previous purchases, the Web site security and privacy policies, and service quality are the main determinants of trust. Also, the motives and inhibitors the individuals perceive when buying online determine the type of signals they consider to trust. PMID:18657047

  15. US Food and Drug Administration Web Site: A Primer for Pharmacists.

    PubMed

    Leonard, James; Baker, Danial E

    2015-11-01

    The US Food and Drug Administration (FDA) Web site includes a vast amount of information, but it can be difficult to navigate. Despite frequently asked question (FAQ)-type pages within the Web site, it may not be easy for first-time users to find drug information. This article presents some examples of common questions, provides the locations of the answers on the FDA Web site, and gives a brief description of some of the many resources the FDA provides for health care professionals. Additionally, a newer project being undertaken by the FDA, Snapshot, is introduced. PMID:27621506

  16. Guidelines for medical and health information sites on the internet: principles governing AMA web sites. American Medical Association.

    PubMed

    Winker, M A; Flanagin, A; Chi-Lum, B; White, J; Andrews, K; Kennett, R L; DeAngelis, C D; Musacchio, R A

    Access to medical information via the Internet has the potential to speed the transformation of the patient-physician relationship from that of physician authority ministering advice and treatment to that of shared decision making between patient and physician. However, barriers impeding this transformation include wide variations in quality of content on the Web, potential for commercial interests to influence online content, and uncertain preservation of personal privacy. To address these issues, the American Medical Association (AMA) has developed principles to guide development and posting of Web site content, govern acquisition and posting of online advertising and sponsorship, ensure site visitors' and patients' rights to privacy and confidentiality, and provide effective and secure means of e-commerce. While these guidelines were developed for the AMA Web sites and visitors to these sites, they also may be useful to other providers and users of medical information on the Web. These principles have been developed with the understanding that they will require frequent revision to keep pace with evolving technology and practices on the Internet. The AMA encourages review and feedback from readers, Web site visitors, policymakers, and all others interested in providing reliable quality information via the Web.

  17. Updates on the web-based VIOLIN vaccine database and analysis system

    PubMed Central

    He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George W.; Xiang, Zuoshuang

    2014-01-01

    The integrative Vaccine Investigation and Online Information Network (VIOLIN) vaccine research database and analysis system (http://www.violinet.org) curates, stores, analyses and integrates various vaccine-associated research data. Since its first publication in NAR in 2008, significant updates have been made. Starting from 211 vaccines annotated at the end of 2007, VIOLIN now includes over 3240 vaccines for 192 infectious diseases and eight noninfectious diseases (e.g. cancers and allergies). Under the umbrella of VIOLIN, >10 relatively independent programs are developed. For example, Protegen stores over 800 protective antigens experimentally proven valid for vaccine development. VirmugenDB annotated over 200 ‘virmugens’, a term coined by us to represent those virulence factor genes that can be mutated to generate successful live attenuated vaccines. Specific patterns were identified from the genes collected in Protegen and VirmugenDB. VIOLIN also includes Vaxign, the first web-based vaccine candidate prediction program based on reverse vaccinology. VIOLIN collects and analyzes different vaccine components including vaccine adjuvants (Vaxjo) and DNA vaccine plasmids (DNAVaxDB). VIOLIN includes licensed human vaccines (Huvax) and veterinary vaccines (Vevax). The Vaccine Ontology is applied to standardize and integrate various data in VIOLIN. VIOLIN also hosts the Ontology of Vaccine Adverse Events (OVAE) that logically represents adverse events associated with licensed human vaccines. PMID:24259431

  18. Unraveling the Web of Viroinformatics: Computational Tools and Databases in Virus Research

    PubMed Central

    Priyadarshini, Pragya; Vrati, Sudhanshu

    2014-01-01

    The beginning of the second century of research in the field of virology (the first virus was discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the birth of a new domain—viroinformatics. The availability of more than 100 Web servers and databases embracing all or specific viruses (for example, dengue virus, influenza virus, hepatitis virus, human immunodeficiency virus [HIV], hemorrhagic fever virus [HFV], human papillomavirus [HPV], West Nile virus, etc.) as well as distinct applications (comparative/diversity analysis, viral recombination, small interfering RNA [siRNA]/short hairpin RNA [shRNA]/microRNA [miRNA] studies, RNA folding, protein-protein interaction, structural analysis, and phylotyping and genotyping) will definitely aid the development of effective drugs and vaccines. However, information about their access and utility is not available at any single source or on any single platform. Therefore, a compendium of various computational tools and resources dedicated specifically to virology is presented in this article. PMID:25428870

  19. Drug-target interaction prediction: databases, web servers and computational models.

    PubMed

    Chen, Xing; Yan, Chenggang Clarence; Zhang, Xiaotian; Zhang, Xu; Dai, Feng; Yin, Jian; Zhang, Yongdong

    2016-07-01

    Identification of drug-target interactions is an important process in drug discovery. Although high-throughput screening and other biological assays are becoming available, experimental methods for drug-target interaction identification remain to be extremely costly, time-consuming and challenging even nowadays. Therefore, various computational models have been developed to predict potential drug-target associations on a large scale. In this review, databases and web servers involved in drug-target identification and drug discovery are summarized. In addition, we mainly introduced some state-of-the-art computational models for drug-target interactions prediction, including network-based method, machine learning-based method and so on. Specially, for the machine learning-based method, much attention was paid to supervised and semi-supervised models, which have essential difference in the adoption of negative samples. Although significant improvements for drug-target interaction prediction have been obtained by many effective computational models, both network-based and machine learning-based methods have their disadvantages, respectively. Furthermore, we discuss the future directions of the network-based drug discovery and network approach for personalized drug discovery based on personalized medicine, genome sequencing, tumor clone-based network and cancer hallmark-based network. Finally, we discussed the new evaluation validation framework and the formulation of drug-target interactions prediction problem by more realistic regression formulation based on quantitative bioactivity data.

  20. Updates on the web-based VIOLIN vaccine database and analysis system.

    PubMed

    He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George W; Xiang, Zuoshuang

    2014-01-01

    The integrative Vaccine Investigation and Online Information Network (VIOLIN) vaccine research database and analysis system (http://www.violinet.org) curates, stores, analyses and integrates various vaccine-associated research data. Since its first publication in NAR in 2008, significant updates have been made. Starting from 211 vaccines annotated at the end of 2007, VIOLIN now includes over 3240 vaccines for 192 infectious diseases and eight noninfectious diseases (e.g. cancers and allergies). Under the umbrella of VIOLIN, >10 relatively independent programs are developed. For example, Protegen stores over 800 protective antigens experimentally proven valid for vaccine development. VirmugenDB annotated over 200 'virmugens', a term coined by us to represent those virulence factor genes that can be mutated to generate successful live attenuated vaccines. Specific patterns were identified from the genes collected in Protegen and VirmugenDB. VIOLIN also includes Vaxign, the first web-based vaccine candidate prediction program based on reverse vaccinology. VIOLIN collects and analyzes different vaccine components including vaccine adjuvants (Vaxjo) and DNA vaccine plasmids (DNAVaxDB). VIOLIN includes licensed human vaccines (Huvax) and veterinary vaccines (Vevax). The Vaccine Ontology is applied to standardize and integrate various data in VIOLIN. VIOLIN also hosts the Ontology of Vaccine Adverse Events (OVAE) that logically represents adverse events associated with licensed human vaccines.

  1. Updates on the web-based VIOLIN vaccine database and analysis system.

    PubMed

    He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George W; Xiang, Zuoshuang

    2014-01-01

    The integrative Vaccine Investigation and Online Information Network (VIOLIN) vaccine research database and analysis system (http://www.violinet.org) curates, stores, analyses and integrates various vaccine-associated research data. Since its first publication in NAR in 2008, significant updates have been made. Starting from 211 vaccines annotated at the end of 2007, VIOLIN now includes over 3240 vaccines for 192 infectious diseases and eight noninfectious diseases (e.g. cancers and allergies). Under the umbrella of VIOLIN, >10 relatively independent programs are developed. For example, Protegen stores over 800 protective antigens experimentally proven valid for vaccine development. VirmugenDB annotated over 200 'virmugens', a term coined by us to represent those virulence factor genes that can be mutated to generate successful live attenuated vaccines. Specific patterns were identified from the genes collected in Protegen and VirmugenDB. VIOLIN also includes Vaxign, the first web-based vaccine candidate prediction program based on reverse vaccinology. VIOLIN collects and analyzes different vaccine components including vaccine adjuvants (Vaxjo) and DNA vaccine plasmids (DNAVaxDB). VIOLIN includes licensed human vaccines (Huvax) and veterinary vaccines (Vevax). The Vaccine Ontology is applied to standardize and integrate various data in VIOLIN. VIOLIN also hosts the Ontology of Vaccine Adverse Events (OVAE) that logically represents adverse events associated with licensed human vaccines. PMID:24259431

  2. Managing Large Scale Project Analysis Teams through a Web Accessible Database

    NASA Technical Reports Server (NTRS)

    O'Neil, Daniel A.

    2008-01-01

    Large scale space programs analyze thousands of requirements while mitigating safety, performance, schedule, and cost risks. These efforts involve a variety of roles with interdependent use cases and goals. For example, study managers and facilitators identify ground-rules and assumptions for a collection of studies required for a program or project milestone. Task leaders derive product requirements from the ground rules and assumptions and describe activities to produce needed analytical products. Disciplined specialists produce the specified products and load results into a file management system. Organizational and project managers provide the personnel and funds to conduct the tasks. Each role has responsibilities to establish information linkages and provide status reports to management. Projects conduct design and analysis cycles to refine designs to meet the requirements and implement risk mitigation plans. At the program level, integrated design and analysis cycles studies are conducted to eliminate every 'to-be-determined' and develop plans to mitigate every risk. At the agency level, strategic studies analyze different approaches to exploration architectures and campaigns. This paper describes a web-accessible database developed by NASA to coordinate and manage tasks at three organizational levels. Other topics in this paper cover integration technologies and techniques for process modeling and enterprise architectures.

  3. Unraveling the web of viroinformatics: computational tools and databases in virus research.

    PubMed

    Sharma, Deepak; Priyadarshini, Pragya; Vrati, Sudhanshu

    2015-02-01

    The beginning of the second century of research in the field of virology (the first virus was discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the birth of a new domain--viroinformatics. The availability of more than 100 Web servers and databases embracing all or specific viruses (for example, dengue virus, influenza virus, hepatitis virus, human immunodeficiency virus [HIV], hemorrhagic fever virus [HFV], human papillomavirus [HPV], West Nile virus, etc.) as well as distinct applications (comparative/diversity analysis, viral recombination, small interfering RNA [siRNA]/short hairpin RNA [shRNA]/microRNA [miRNA] studies, RNA folding, protein-protein interaction, structural analysis, and phylotyping and genotyping) will definitely aid the development of effective drugs and vaccines. However, information about their access and utility is not available at any single source or on any single platform. Therefore, a compendium of various computational tools and resources dedicated specifically to virology is presented in this article. PMID:25428870

  4. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.

    PubMed

    Konc, Janez; Miller, Benjamin T; Štular, Tanja; Lešnik, Samo; Woodcock, H Lee; Brooks, Bernard R; Janežič, Dušanka

    2015-11-23

    Proteins often exist only as apo structures (unligated) in the Protein Data Bank, with their corresponding holo structures (with ligands) unavailable. However, apoproteins may not represent the amino-acid residue arrangement upon ligand binding well, which is especially problematic for molecular docking. We developed the ProBiS-CHARMMing web interface by connecting the ProBiS ( http://probis.cmm.ki.si ) and CHARMMing ( http://www.charmming.org ) web servers into one functional unit that enables prediction of protein-ligand complexes and allows for their geometry optimization and interaction energy calculation. The ProBiS web server predicts ligands (small compounds, proteins, nucleic acids, and single-atom ligands) that may bind to a query protein. This is achieved by comparing its surface structure against a nonredundant database of protein structures and finding those that have binding sites similar to that of the query protein. Existing ligands found in the similar binding sites are then transposed to the query according to predictions from ProBiS. The CHARMMing web server enables, among other things, minimization and potential energy calculation for a wide variety of biomolecular systems, and it is used here to optimize the geometry of the predicted protein-ligand complex structures using the CHARMM force field and to calculate their interaction energies with the corresponding query proteins. We show how ProBiS-CHARMMing can be used to predict ligands and their poses for a particular binding site, and minimize the predicted protein-ligand complexes to obtain representations of holoproteins. The ProBiS-CHARMMing web interface is freely available for academic users at http://probis.nih.gov.

  5. 77 FR 33000 - Solicitation for a Cooperative Agreement: Resources for NIC's Web Site on Data Collection and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-04

    ... National Institute of Corrections Solicitation for a Cooperative Agreement: Resources for NIC's Web Site on... Corrections (NIC) is seeking applications for the development of resources for NIC's Web site on data.... NIC currently has some content under development on its Web site at...

  6. Assessing Perceived Credibility of Web Sites in a Terrorism Context: The PFLP, Tamil Tigers, Hamas, and Hezbollah

    ERIC Educational Resources Information Center

    Spinks, Brandon Todd

    2009-01-01

    The purpose of the study was to contribute to the overall understanding of terrorist organizations' use of the Internet and to increase researchers' knowledge of Web site effectiveness. The methodological approach was evaluation of the perceived credibility of Web sites based on existing criteria derived from information users. The Web sites of…

  7. 75 FR 60761 - Medical Device User Fee and Modernization Act; Notice to Public of Web site Location of Fiscal...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-01

    ... Public of Web site Location of Fiscal Year 2011 Proposed Guidance Development AGENCY: Food and Drug Administration, HHS. ACTION: Notice. ] SUMMARY: The Food and Drug Administration (FDA) is announcing the Web site... topics, or suggestions for new or different guidances. This notice announces the Web site location of...

  8. Food and Beverage Brands that Market to Children and Adolescents on the Internet: A Content Analysis of Branded Web Sites

    ERIC Educational Resources Information Center

    Henry, Anna E.; Story, Mary

    2009-01-01

    Objective: To identify food and beverage brand Web sites featuring designated children's areas, assess marketing techniques present on those industry Web sites, and determine nutritional quality of branded food items marketed to children. Design: Systematic content analysis of food and beverage brand Web sites and nutrient analysis of food and…

  9. An Exploratory Usability Evaluation of Colorado State University Libraries' Digital Collections and the Western Waters Digital Library Web Sites

    ERIC Educational Resources Information Center

    Zimmerman, Don; Paschal, Dawn Bastian

    2009-01-01

    In an exploratory study, participants (n = 18) completed 11 usability tasks to assess ease of use of two Web sites, and then a Web site perception questionnaire for each. Participants rated both Web sites positively, but 25% and 36% could not complete all tasks; doing so required more than a minute to complete. (Contains 2 figures and 7 tables.)

  10. Text Categorization Based on K-Nearest Neighbor Approach for Web Site Classification.

    ERIC Educational Resources Information Center

    Kwon, Oh-Woog; Lee, Jong-Hyeok

    2003-01-01

    Discusses text categorization and Web site classification and proposes a three-step classification system that includes the use of Web pages linked with the home page. Highlights include the k-nearest neighbor (k-NN) approach; improving performance with a feature selection method and a term weighting scheme using HTML tags; and similarity…

  11. Chucking the Checklist: A Contextual Approach to Teaching Undergraduates Web-Site Evaluation

    ERIC Educational Resources Information Center

    Meola, Marc

    2004-01-01

    This paper criticizes the checklist model approach (authority, accuracy, objectivity, currency, coverage) to teaching undergraduates how to evaluate Web sites. The checklist model rests on faulty assumptions about the nature of information available through the Web, mistaken beliefs about student evaluation skills, and an exaggerated sense of…

  12. Use of a World Wide Web Site Evaluation Tool in Chemistry.

    ERIC Educational Resources Information Center

    Yates, Paul C.

    2000-01-01

    Discusses the importance of assessment of materials on the World Wide Web that may be freely accessible to both instructors and students. Evaluates web sites that cover the periodic table in terms of content and design. (Contains 16 references.) (Author/YDS)

  13. 75 FR 42599 - Posting of Flight Delay Data on Web Sites

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-22

    ... comments in the Federal Register on June 21, 2010 (75 FR 34925). The direct final rule required that the... Office of the Secretary 14 CFR Part 234 RIN No. 2105-AE02 Posting of Flight Delay Data on Web Sites... amending the time period for uploading flight performance information to a reporting air carrier's Web...

  14. People's Court: How a Student-built Web Site Brought the Community and the Courts Together.

    ERIC Educational Resources Information Center

    Starr, Robert C.

    2002-01-01

    Describes how a group of middle-school students in Walled Lake, Michigan, collaborated with a Web development firm and the county information technology department to build a district court Web site (www.52-1districtcourt.com) to provide community access to legal information. Includes such features as a virtual tour of the court, "Ask the Judge,"…

  15. Current State of Web Sites in Science Education--Focus on Atomic Structure.

    ERIC Educational Resources Information Center

    Tuvi, Inbal; Nachmias, Rafi

    2001-01-01

    Explores to what extent the web's advanced graphical tools and computational power are implemented in science education. Focuses on the pedagogical and technological characteristics of web sites attempting to teach the subject of atomic structure. (Contains 33 references.) (Author/YDS)

  16. Services for Graduate Students: A Review of Academic Library Web Sites

    ERIC Educational Resources Information Center

    Rempel, Hannah Gascho

    2010-01-01

    A library's Web site is well recognized as the gateway to the library for the vast majority of users. Choosing the most user-friendly Web architecture to reflect the many services libraries offer is a complex process, and librarians are still experimenting to find what works best for their users. As part of a redesign of the Oregon State…

  17. Web Site Accessibility at Institutions of Higher Education: An Introduction to Accessibility Awareness

    ERIC Educational Resources Information Center

    Calloway, Linda Jo

    2004-01-01

    The proliferation of information in electronic format does not guarantee its accessibility. The fact that many Web sites are not accessible to large segments of the disabled community has created a digital divide. Web accessibility is especially important in University communities, since the Internet and the digitization of information have…

  18. A Demographic Research on Having a Personal Web Site of High School Students

    ERIC Educational Resources Information Center

    Ugras, Tuba; Bayrak, Beyza Karadeniz; Kert, Serhat B.

    2007-01-01

    In this study, having a personal web site of high school students in Turkey has been researched. The survey has been executed on the students from different types of high schools in Besiktas, Istanbul, Turkey. As the data collecting tool in the research, a questionnaire, that consists of some questions about whether they have a personal web site…

  19. Soil food web changes during spontaneous succession at post mining sites: a possible ecosystem engineering effect on food web organization?

    PubMed

    Frouz, Jan; Thébault, Elisa; Pižl, Václav; Adl, Sina; Cajthaml, Tomáš; Baldrián, Petr; Háněl, Ladislav; Starý, Josef; Tajovský, Karel; Materna, Jan; Nováková, Alena; de Ruiter, Peter C

    2013-01-01

    Parameters characterizing the structure of the decomposer food web, biomass of the soil microflora (bacteria and fungi) and soil micro-, meso- and macrofauna were studied at 14 non-reclaimed 1- 41-year-old post-mining sites near the town of Sokolov (Czech Republic). These observations on the decomposer food webs were compared with knowledge of vegetation and soil microstructure development from previous studies. The amount of carbon entering the food web increased with succession age in a similar way as the total amount of C in food web biomass and the number of functional groups in the food web. Connectance did not show any significant changes with succession age, however. In early stages of the succession, the bacterial channel dominated the food web. Later on, in shrub-dominated stands, the fungal channel took over. Even later, in the forest stage, the bacterial channel prevailed again. The best predictor of fungal bacterial ratio is thickness of fermentation layer. We argue that these changes correspond with changes in topsoil microstructure driven by a combination of plant organic matter input and engineering effects of earthworms. In early stages, soil is alkaline, and a discontinuous litter layer on the soil surface promotes bacterial biomass growth, so the bacterial food web channel can dominate. Litter accumulation on the soil surface supports the development of the fungal channel. In older stages, earthworms arrive, mix litter into the mineral soil and form an organo-mineral topsoil, which is beneficial for bacteria and enhances the bacterial food web channel. PMID:24260281

  20. Soil Food Web Changes during Spontaneous Succession at Post Mining Sites: A Possible Ecosystem Engineering Effect on Food Web Organization?

    PubMed Central

    Frouz, Jan; Thébault, Elisa; Pižl, Václav; Adl, Sina; Cajthaml, Tomáš; Baldrián, Petr; Háněl, Ladislav; Starý, Josef; Tajovský, Karel; Materna, Jan; Nováková, Alena; de Ruiter, Peter C.

    2013-01-01

    Parameters characterizing the structure of the decomposer food web, biomass of the soil microflora (bacteria and fungi) and soil micro-, meso- and macrofauna were studied at 14 non-reclaimed 1– 41-year-old post-mining sites near the town of Sokolov (Czech Republic). These observations on the decomposer food webs were compared with knowledge of vegetation and soil microstructure development from previous studies. The amount of carbon entering the food web increased with succession age in a similar way as the total amount of C in food web biomass and the number of functional groups in the food web. Connectance did not show any significant changes with succession age, however. In early stages of the succession, the bacterial channel dominated the food web. Later on, in shrub-dominated stands, the fungal channel took over. Even later, in the forest stage, the bacterial channel prevailed again. The best predictor of fungal bacterial ratio is thickness of fermentation layer. We argue that these changes correspond with changes in topsoil microstructure driven by a combination of plant organic matter input and engineering effects of earthworms. In early stages, soil is alkaline, and a discontinuous litter layer on the soil surface promotes bacterial biomass growth, so the bacterial food web channel can dominate. Litter accumulation on the soil surface supports the development of the fungal channel. In older stages, earthworms arrive, mix litter into the mineral soil and form an organo-mineral topsoil, which is beneficial for bacteria and enhances the bacterial food web channel. PMID:24260281

  1. The NCBI Taxonomy database.

    PubMed

    Federhen, Scott

    2012-01-01

    The NCBI Taxonomy database (http://www.ncbi.nlm.nih.gov/taxonomy) is the standard nomenclature and classification repository for the International Nucleotide Sequence Database Collaboration (INSDC), comprising the GenBank, ENA (EMBL) and DDBJ databases. It includes organism names and taxonomic lineages for each of the sequences represented in the INSDC's nucleotide and protein sequence databases. The taxonomy database is manually curated by a small group of scientists at the NCBI who use the current taxonomic literature to maintain a phylogenetic taxonomy for the source organisms represented in the sequence databases. The taxonomy database is a central organizing hub for many of the resources at the NCBI, and provides a means for clustering elements within other domains of NCBI web site, for internal linking between domains of the Entrez system and for linking out to taxon-specific external resources on the web. Our primary purpose is to index the domain of sequences as conveniently as possible for our user community.

  2. 75 FR 22391 - Notice of Web Site Publication for the Climate Program Office

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-28

    ... National Oceanic and Atmospheric Administration Notice of Web Site Publication for the Climate Program Office AGENCY: Climate Program Office (CPO), Office of Oceanic and Atmospheric Research (OAR), National Oceanic and Atmospheric Administration (NOAA), Commerce. ACTION: Notice. SUMMARY: The Climate...

  3. 75 FR 35765 - Proposed Information Collection; Comment Request; BroadbandMatch Web Site Tool

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Telecommunications and Information Administration Proposed Information Collection; Comment Request; BroadbandMatch Web Site Tool AGENCY: National Telecommunications and Information Administration,...

  4. Marsoweb: A Collaborative Web Facility for Mars Landing Site and Global Data Studies

    NASA Astrophysics Data System (ADS)

    Deardorff, D. G.; Gulick, V. C.; Briggs, G. A.

    2002-03-01

    Marsoweb is an evolving collaborative web environment for interactive 2D and 3D graphical analysis of data for Mars landing site studies, as well as for global Mars datasets of general scientific interest.

  5. Web site helps families cope with childhood illnesses. Children's Hospital of Philadelphia undergoes Internet expansion.

    PubMed

    Rees, Tom

    2002-01-01

    The Children's Hospital of Philadelphia has received accolades for its revised Web site, which provides extensive communications channels for patients and their parents. Also, its intranet streamlines internal communications.

  6. Broadcasting Disability: An Exploration of the Educational Potential of a Video Sharing Web Site

    ERIC Educational Resources Information Center

    Bromley, Barbara E.

    2009-01-01

    YouTube is an Internet phenomenon, a video sharing Web site where individuals can upload videos to be viewed by anyone visiting the site. The purpose of this study was to search for and categorize videos related to disability on YouTube and explore the educational potential of the site for the disability community. A seven-day time period in…

  7. Outreach for Outreach: Targeting social media audiences to promote a NASA kids’ web site

    NASA Astrophysics Data System (ADS)

    Pham, C. C.

    2009-12-01

    The Space Place is a successful NASA web site that benefits upper elementary school students and educators by providing games, activities, and resources to stimulate interest in science, technology, engineering, and mathematics, as well as to inform the audience of NASA’s contributions. As online social networking grows to be a central component of modern communication, The Space Place has explored the benefits of integrating social networks with the web site to increase awareness of materials the web site offers. This study analyzes the capabilities of social networks, and specifically the demographics of Twitter and Facebook. It then compares these results with the content, audience, and perceived demographics of The Space Place web site. Based upon the demographic results, we identified a target constituency that would benefit from the integration of social networks into The Space Place web site. As a result of this study, a Twitter feed has been established that releases a daily tweet from The Space Place. In addition, a Facebook page has been created to showcase new content and prompt interaction among fans of The Space Place. Currently, plans are under way to populate the Space Place Facebook page. Each social network has been utilized in an effort to spark excitement about the content on The Space Place, as well as to attract followers to the main NASA Space Place web site. To pursue this idea further, a plan has been developed to promote NASA Space Place’s social media tools among the target audience.

  8. Designing a Web Site to Share Information with Parents

    ERIC Educational Resources Information Center

    Englund, Lillian White

    2009-01-01

    This article discusses the development and use of an on-line portfolio process. It presents a background rationale for the need and effectiveness of a communication tool that supports the use of the portfolio process throughout the education of a child with identified disabilities. The process for developing the individualized Web page is…

  9. Evaluating the Usability of a Museum Web Site.

    ERIC Educational Resources Information Center

    Harms, Ilse; Schweibenz, Werner

    This paper presents a research project conducted by the Department of Information Science in cooperation with the Saarland Museum, the art museum of the Federal State of Saarland, Germany. The study had two aims. The first was to evaluate some methods of usability engineering for the Web, and the second was to evaluate the usability of the…

  10. Using the Web for Teaching: School and Community Sites.

    ERIC Educational Resources Information Center

    Lambrecht, Judith; Ballard, Joyce Kimberly

    Widely available Internet resources can now be used effectively both in a formal educational setting as well as for the general public. This paper describes two ways health education professionals and educators have used the World Wide Web for teaching. In the first instance, a community education effort is described. It is intended to reach women…

  11. Rustling Up a Web Site without Much Money

    ERIC Educational Resources Information Center

    Warrington, Anne; Greig, Debra

    2006-01-01

    Lakeland College, a small rural institution on the Canadian prairies, used to face the dilemma of needing a Web presence without having the funds, staff, and technology infrastructure to support it. This article relates how Lakeland's librarian hired ShirWin Knowledge & Learning Systems, Inc., a small software company based in Edmonton, Alberta.…

  12. Colleges Build Web Sites to Enable Campus Comparisons, sans Ranks

    ERIC Educational Resources Information Center

    Cech, Scott J.

    2007-01-01

    This article reports that long-established college associations and a nascent national organization are either building or planning five free, Web-based college-information platforms that may diminish the influence of the "U.S. News and Report's" annual rankings of "America's Best Colleges" and its influence among high school counselors, students,…

  13. Building Trust Through Secure Web Sites. The Systems Librarian

    ERIC Educational Resources Information Center

    Breeding, Marshall

    2005-01-01

    Who can be trusted on the Web? These days, with identity theft seemingly rampant, it's more important than ever to take all possible measures to protect privacy and to shield personal information from those who might not have good intentions. Today, librarians also have to take reasonable precautions to ensure that the online services that they…

  14. User friendly web site a winner. San Diego's Sharp HealthCare provides wealth of information.

    PubMed

    Rees, Tom

    2003-01-01

    The Sharp HealthCare, San Diego, web site, a winner of the 2002 Medicine on the Net Web Excellence Award, provides a wealth of information without wasting space or confusing the visitor. The web site, www.sharp.com, can be viewed in both English and Spanish, a valuable consideration for those living in the California-Mexico border area served by Sharp. The integrated health network operates seven hospitals and three medical group practices. It has 2,541 physicians on medical staffs and more than 11,000 employees. PMID:12807120

  15. Social Networking Web Sites as a Tool for Student Transitions: Purposive Use of Social Networking Web Sites for the First-Year Experience

    ERIC Educational Resources Information Center

    Nalbone, David P.; Kovach, Ronald J.; Fish, Jessica N.; McCoy, Kelsey M.; Jones, Kathryn E.; Wright, Hillary Rawlings

    2016-01-01

    The current study investigated the potential role that social networking Web sites (e.g., Facebook) played in creating both actual and virtual learning communities within the first-year seminar. Researchers conducted a 2-year longitudinal study to assess whether students who were connected within a university-founded virtual network persisted in…

  16. iLIR database: A web resource for LIR motif-containing proteins in eukaryotes

    PubMed Central

    Jacomin, Anne-Claire; Samavedam, Siva; Promponas, Vasilis; Nezis, Ioannis P.

    2016-01-01

    ABSTRACT Atg8-family proteins are the best-studied proteins of the core autophagic machinery. They are essential for the elongation and closure of the phagophore into a proper autophagosome. Moreover, Atg8-family proteins are associated with the phagophore from the initiation of the autophagic process to, or just prior to, the fusion between autophagosomes with lysosomes. In addition to their implication in autophagosome biogenesis, they are crucial for selective autophagy through their ability to interact with selective autophagy receptor proteins necessary for the specific targeting of substrates for autophagic degradation. In the past few years it has been revealed that Atg8-interacting proteins include not only receptors but also components of the core autophagic machinery, proteins associated with vesicles and their transport, and specific proteins that are selectively degraded by autophagy. Atg8-interacting proteins contain a short linear LC3-interacting region/LC3 recognition sequence/Atg8-interacting motif (LIR/LRS/AIM) motif which is responsible for their interaction with Atg8-family proteins. These proteins are referred to as LIR-containing proteins (LIRCPs). So far, many experimental efforts have been carried out to identify new LIRCPs, leading to the characterization of some of them in the past 10 years. Given the need for the identification of LIRCPs in various organisms, we developed the iLIR database (https://ilir.warwick.ac.uk) as a freely available web resource, listing all the putative canonical LIRCPs identified in silico in the proteomes of 8 model organisms using the iLIR server, combined with a Gene Ontology (GO) term analysis. Additionally, a curated text-mining analysis of the literature permitted us to identify novel putative LICRPs in mammals that have not previously been associated with autophagy. PMID:27484196

  17. Preliminary Safety Analysis of the Gorleben Site: Geological Database - 13300

    SciTech Connect

    Weber, Jan Richard; Mrugalla, Sabine; Dresbach, Christian; Hammer, Joerg

    2013-07-01

    The Gorleben salt dome is 4 km wide and nearly 15 km long. It is composed of different salt rock types of the Zechstein (Upper Permian) series and extends to the Zechstein basis in a depth of more than 3 km. In the course of the salt dome formation the salt was moved several kilometers. During the uplift of the salt the initially plane-bedded strata of the Zechstein series were extensively folded. In this process anhydrite as a competent layer was broken to isolated blocks. In the core of the salt dome the Hauptsalz, which is characterized by a particularly high creeping capacity, forms a homogeneous halite body with a volume of several cubic kilometres. The Hauptsalz contains gaseous and liquid hydrocarbons in separated zones of decimeter to meter dimensions. The overall hydrocarbon content is far below 0.01 %. At the flanks the salt dome consists of salt rocks with lower creeping capacities. Brine reservoirs with fluid volumes in the range of liters to hundreds of cubic meters exist in certain regions of this part of the salt dome. The water content of the Hauptsalz is below 0.02 %. Interconnected pores do not exist in the salt rock outside of fluid bearing or fractured areas, i.e. the salt rock is impermeable. The exploration of the Gorleben site as a potential site for a HLW-repository started in 1979 and is still in progress. To date no scientific findings contest the suitability of the site for a safe HLW-repository. (authors)

  18. MaGa, a web-based collaborative database for gas emissions: a tool to improve the knowledge on Earth degassing

    NASA Astrophysics Data System (ADS)

    Frigeri, A.; Cardellini, C.; Chiodini, G.; Frondini, F.; Bagnato, E.; Aiuppa, A.; Fischer, T. P.; Lehnert, K. A.

    2014-12-01

    The study of the main pathways of carbon flux from the deep Earth requires the analysis of a large quantity and variety of data on volcanic and non-volcanic gas emissions. Hence, there is need for common frameworks to aggregate available data and insert new observations. Since 2010 we have been developing the Mapping Gas emissions (MaGa) web-based database to collect data on carbon degassing form volcanic and non-volcanic environments. MaGa uses an Object-relational model, translating the experience of field surveyors into the database schema. The current web interface of MaGa allows users to browse the data in tabular format or by browsing an interactive web-map. Enabled users can insert information as measurement methods, instrument details as well as the actual values collected in the field. Measurements found in the literature can be inserted as well as direct field observations made by human-operated instruments. Currently the database includes fluxes and gas compositions from active craters degassing, diffuse soil degassing and fumaroles both from dormant volcanoes and open-vent volcanoes from literature survey and data about non-volcanic emission of the Italian territory. Currently, MaGa holds more than 1000 volcanic plume degassing fluxes, data from 30 sites of diffuse soil degassing from italian volcanoes, and about 60 measurements from fumarolic and non volcanic emission sites. For each gas emission site, the MaGa holds data, pictures, descriptions on gas sampling, analysis and measurement methods, together with bibliographic references and contacts to researchers having experience on each site. From 2012, MaGa developments started to be focused towards the framework of the Deep Earth Carbon Degassing research initiative of the Deep Carbon Observatory. Whithin the DECADE initiative, there are others data systems, as EarthChem and the Smithsonian Institution's Global Volcanism Program. An interoperable interaction between the DECADE data systems is being

  19. Increasing the Usage of a School District Web Site by Training Staff and Community Members in Its Use and Development.

    ERIC Educational Resources Information Center

    Willome, Mike

    This goal of this project was to create a public school district World Wide Web site that staff and community members would use more frequently. The project included three solutions. First, 33 one-on-one and small-group training sessions were conducted to increase awareness and improve Web services. A Web-site advisory committee, which developed…

  20. The Effect of Top-Level Domains and Advertisements on Health Web Site Credibility

    PubMed Central

    Wang, Zuoming; Loh, Tracy

    2004-01-01

    Background Concerns over health information on the Internet have generated efforts to enhance credibility markers; yet how users actually assess the credibility of online health information is largely unknown. Objective This study set out to (1) establish a parsimonious and valid questionnaire instrument to measure credibility of Internet health information by drawing on various previous measures of source, news, and other credibility scales; and (2) to identify the effects of Web-site domains and advertising on credibility perceptions. Methods Respondents (N = 156) examined one of 12 Web-site mock-ups and completed credibility scales in a 3 x 2 x 2 between-subjects experimental design. Factor analysis and validity checks were used for item reduction, and analysis of variance was employed for hypothesis testing of Web-site features' effects. Results In an attempt to construct a credibility instrument, three dimensions of credibility (safety, trustworthiness, and dynamism) were retained, reflecting traditional credibility sub-themes, but composed of items from disparate sources. When testing the effect of the presence or absence of advertising on a Web site on credibility, we found that this depends on the site's domain, with a trend for advertisements having deleterious effects on the credibility of sites with .org domain, but positive effects on sites with .com or .edu domains. Conclusions Health-information Web-site providers should select domains purposefully when they can, especially if they must accept on-site advertising. Credibility perceptions may not be invariant or stable, but rather are sensitive to topic and context. Future research may employ these findings in order to compare other forms of health-information delivery to optimal Web-site features. PMID:15471750

  1. Measuring Law Library Catalog Web Site Usability: A Web Analytic Approach

    ERIC Educational Resources Information Center

    Fang, Wei; Crawford, Marjorie E.

    2008-01-01

    Although there is a proliferation of information available on the Web, and law professors, students, and other users have a variety of channels to locate information and complete their research activities, the law library catalog still remains an important source for offering users access to information that has been evaluated and cataloged by…

  2. Informatics in radiology (infoRAD): HTML and Web site design for the radiologist: a primer.

    PubMed

    Ryan, Anthony G; Louis, Luck J; Yee, William C

    2005-01-01

    A Web site has enormous potential as a medium for the radiologist to store, present, and share information in the form of text, images, and video clips. With a modest amount of tutoring and effort, designing a site can be as painless as preparing a Microsoft PowerPoint presentation. The site can then be used as a hub for the development of further offshoots (eg, Web-based tutorials, storage for a teaching library, publication of information about one's practice, and information gathering from a wide variety of sources). By learning the basics of hypertext markup language (HTML), the reader will be able to produce a simple and effective Web page that permits display of text, images, and multimedia files. The process of constructing a Web page can be divided into five steps: (a) creating a basic template with formatted text, (b) adding color, (c) importing images and multimedia files, (d) creating hyperlinks, and (e) uploading one's page to the Internet. This Web page may be used as the basis for a Web-based tutorial comprising text documents and image files already in one's possession. Finally, there are many commercially available packages for Web page design that require no knowledge of HTML.

  3. ECRbase: Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes

    SciTech Connect

    Loots, G; Ovcharenko, I

    2006-08-08

    Evolutionary conservation of DNA sequences provides a tool for the identification of functional elements in genomes. We have created a database of evolutionary conserved regions (ECRs) in vertebrate genomes entitled ECRbase that is constructed from a collection of pairwise vertebrate genome alignments produced by the ECR Browser database. ECRbase features a database of syntenic blocks that recapitulate the evolution of rearrangements in vertebrates and a collection of promoters in all vertebrate genomes presented in the database. The database also contains a collection of annotated transcription factor binding sites (TFBS) in all ECRs and promoter elements. ECRbase currently includes human, rhesus macaque, dog, opossum, rat, mouse, chicken, frog, zebrafish, and two pufferfish genomes. It is freely accessible at http://ECRbase.dcode.org.

  4. Quality, Range, and Legibility in Web Sites Related to Orofacial Functions

    PubMed Central

    Corrêa, Camila de Castro; Ferrari, Deborah Viviane; Berretin-Felix, Giédre

    2013-01-01

    Introduction Plenty of information about health is available on the Internet; however, quality and legibility are not always evaluated. Knowledge regarding orofacial functions can be considered important for the population because it allows proper stimulus, early diagnosis, and prevention of the oral myofunctional alterations during early infancy. Objective The aim was evaluate the quality, legibility, and range of Web sites available in Brazilian Portuguese regarding the orofacial functions. Methods Selected Web sites with information directed to parents/caregivers of babies regarding breast-feeding, feeding after 6 months, deleterious oral habits, and breathing and speech were studied. The Web sites were evaluated through the application of Flesch Reading Ease Test and aspects of the Health on the Net (HON) modified code (HONCode); the range of the subjects addressed was compared with other aspects of infant development. Results From the access of 350 pages of the Internet, 35 Web sites were selected and 315 excluded because they did not meet the inclusion criteria. In relation to legibility, Web sites scored an average of 61.23% in the Flesch Test, and the application of the modified HONCode showed an average of 6.43 points; an average of 2.49 subjects were found per Web site evaluated, with information on breast-feeding being more frequent and subjects such as breathing and speech less frequent. Conclusions Web sites that deal with orofacial functions presented standard legibility classification. Only half of the ethical principles were considered by the modified HONCode in their majority, and most addressed subjects after “breast-feeding” were presented with restricted range. PMID:25992036

  5. ECRbase: Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes

    DOE Data Explorer

    Loots, Gabriela G. [LLNL; Ovcharenko, I. [LLNL

    Evolutionary conservation of DNA sequences provides a tool for the identification of functional elements in genomes. This database of evolutionary conserved regions (ECRs) in vertebrate genomes features a database of syntenic blocks that recapitulate the evolution of rearrangements in vertebrates and a comprehensive collection of promoters in all vertebrate genomes generated using multiple sources of gene annotation. The database also contains a collection of annotated transcription factor binding sites (TFBSs) in evolutionary conserved and promoter elements. ECRbase currently includes human, rhesus macaque, dog, opossum, rat, mouse, chicken, frog, zebrafish, and fugu genomes. (taken from paper in Journal: Bioinformatics, November 7, 2006, pp. 122-124

  6. The Molecular Biology Database Collection: 2008 update

    PubMed Central

    Galperin, Michael Y.

    2008-01-01

    The Nucleic Acids Research online Molecular Biology Database Collection is a public repository that lists more than 1000 databases described in this and previous Nucleic Acids Research annual database issues, as well as a selection of molecular biology databases described in other journals. All databases included in this Collection are freely available to the public. The 2008 update includes 1078 databases, 110 more than the previous one. The links to more than 80 databases have been updated and 25 obsolete databases have been removed from the list. The complete database list and summaries are available online at the Nucleic Acids Research web site, http://nar.oxfordjournals.org/. PMID:18025043

  7. De-MA: a web Database for electron Microprobe Analyses to assist EMP lab manager and users

    NASA Astrophysics Data System (ADS)

    Allaz, J. M.

    2012-12-01

    Lab managers and users of electron microprobe (EMP) facilities require comprehensive, yet flexible documentation structures, as well as an efficient scheduling mechanism. A single on-line database system for managing reservations, and providing information on standards, quantitative and qualitative setups (element mapping, etc.), and X-ray data has been developed for this purpose. This system is particularly useful in multi-user facilities where experience ranges from beginners to the highly experienced. New users and occasional facility users will find these tools extremely useful in developing and maintaining high quality, reproducible, and efficient analyses. This user-friendly database is available through the web, and uses MySQL as a database and PHP/HTML as script language (dynamic website). The database includes several tables for standards information, X-ray lines, X-ray element mapping, PHA, element setups, and agenda. It is configurable for up to five different EMPs in a single lab, each of them having up to five spectrometers and as many diffraction crystals as required. The installation should be done on a web server supporting PHP/MySQL, although installation on a personal computer is possible using third-party freeware to create a local Apache server, and to enable PHP/MySQL. Since it is web-based, any user outside the EMP lab can access this database anytime through any web browser and on any operating system. The access can be secured using a general password protection (e.g. htaccess). The web interface consists of 6 main menus. (1) "Standards" lists standards defined in the database, and displays detailed information on each (e.g. material type, name, reference, comments, and analyses). Images such as EDS spectra or BSE can be associated with a standard. (2) "Analyses" lists typical setups to use for quantitative analyses, allows calculation of mineral composition based on a mineral formula, or calculation of mineral formula based on a fixed

  8. Mental health resources for LGBT collegians: a content analysis of college counseling center Web sites.

    PubMed

    Wright, Paul J; McKinley, Christopher J

    2011-01-01

    This study content analyzed a randomly selected stratified national sample of 203 four-year United States colleges' counseling center Web sites to assess the degree to which such sites feature information and reference services for lesbian, gay, bisexual, and transgender (LGBT) collegians. Results revealed that LGBT-targeted communications were infrequent. For instance, fewer than one third of counseling center Web sites described individual counseling opportunities for LGBT students, fewer than 11% mentioned group counseling opportunities, and fewer than 6% offered a university crafted pamphlet with information about LGBT issues and resources. Findings are interpreted within the context of prior LGBT student health research.

  9. A Holistic, Similarity-Based Approach for Personalized Ranking in Web Databases

    ERIC Educational Resources Information Center

    Telang, Aditya

    2011-01-01

    With the advent of the Web, the notion of "information retrieval" has acquired a completely new connotation and currently encompasses several disciplines ranging from traditional forms of text and data retrieval in unstructured and structured repositories to retrieval of static and dynamic information from the contents of the surface and deep Web.…

  10. How to Combat a Campus-Gossip Web Site (And Why You Shouldn't)

    ERIC Educational Resources Information Center

    Young, Jeffrey R.

    2008-01-01

    The author discusses the gossip Web site Juicy Campus. Although many students express concern that potential employers who see the cite may decline to hire individuals after reading gossip-filled allegations, or that their social lives are in tatters over the mean-spirited, anonymous messages posted about them, because the site has no affiliation…

  11. Facilitating Participation: From the EML Web Site to the Learning Network for Learning Design

    ERIC Educational Resources Information Center

    Hummel, Hans G. K.; Tattersall, Colin; Burgos, Daniel; Brouns, Francis; Kurvers, Hub; Koper, Rob

    2005-01-01

    This article investigates conditions for increasing active participation in on-line communities. As a case study, we use three generations of facilities designed to promote learning in the area of Educational Modelling Languages. Following a description of early experience with a conventional web site and with a community site offering facilities…

  12. The Effectiveness of Web Search Engines to Index New Sites from Different Countries

    ERIC Educational Resources Information Center

    Pirkola, Ari

    2009-01-01

    Introduction: Investigates how effectively Web search engines index new sites from different countries. The primary interest is whether new sites are indexed equally or whether search engines are biased towards certain countries. If major search engines show biased coverage it can be considered a significant economic and political problem because…

  13. The Researcher's Journey: Scholarly Navigation of an Academic Library Web Site

    ERIC Educational Resources Information Center

    McCann, Steve; Ravas, Tammy; Zoellner, Kate

    2010-01-01

    A qualitative study of the Maureen and Mike Mansfield Library's Web site identified the ways in which students and faculty of the University of Montana used the site for research purposes. This study employed open-ended interview questions and observations to spontaneously capture a user's experience in researching topics in which they…

  14. 2 Internet-Savvy Students Help Track Down the Hacker of an NCAA Web Site.

    ERIC Educational Resources Information Center

    Wanat, Thomas

    1997-01-01

    A Duke University (North Carolina) student witnessing vandalism to the National Collegiate Athletic Association's (NCAA) World Wide Web site and a University of Massachusetts, Amherst student, both studying computer science, have contributed substantially to the identification of a computer hacker destroying the NCAA site. The students' rapid…

  15. Legal Bans on Pro-Suicide Web Sites: An Early Retrospective from Australia

    ERIC Educational Resources Information Center

    Pirkis, Jane; Neal, Luke; Dare, Andrew; Blood, R. Warwick; Studdert, David

    2009-01-01

    There are worldwide concerns that pro-suicide web sites may trigger suicidal behaviors among vulnerable individuals. In 2006, Australia became the first country to criminalize such sites, sparking heated debate. Concerns were expressed that the law casts the criminal net too widely; inappropriately interferes with the autonomy of those who wish to…

  16. Black History, Inc! Investigating the Production of Black History through Walmart's Corporate Web Site

    ERIC Educational Resources Information Center

    King, LaGarrett J.; Brown, Anthony L.

    2012-01-01

    Social and public sites are becoming a popular medium for intellectual consumption of Black history. Given the educational climate in which many students' exposure to Black history may come from outside of schools, the authors examine how Walmart's Black History Month Web site produced simplistic and safe narratives about African American history.

  17. 16 CFR 1130.8 - Requirements for Web site registration or alternative e-mail registration.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... alternative e-mail registration. 1130.8 Section 1130.8 Commercial Practices CONSUMER PRODUCT SAFETY COMMISSION... PRODUCTS § 1130.8 Requirements for Web site registration or alternative e-mail registration. (a) Link to... site registration page shall request only the consumer's name, address, telephone number,...

  18. The Environmental Geophysics Web Site and Geophysical Decision Support System (GDSS)

    EPA Science Inventory

    This product provides assistance to project managers, remedial project managers, stakeholders, and anyone interested in on-site investigations or environmental geophysics. The APM is the beta version of the new U.S. EPA Environmental Geophysics Web Site which includes the Geophys...

  19. Prostate cancer guidelines on Web 2.0-based sites: the screening dilemma continues online.

    PubMed

    Friedman, Daniela B; Koskan, Alexis; Rose, India D

    2011-03-01

    Little is known about prostate cancer (PrCA) screening information on participatory, interactive, and consumer-generated websites collectively referred to as Web 2.0. A content analysis was conducted of PrCA resources on four highly trafficked Web 2.0 social bookmarking sites. A total of 127 webpages were analyzed. Most content was from news websites (48.9%) and blogs (37.8%). PrCA screening was mentioned on 95.3% of pages; only 30.7% discussed the prostate-specific antigen test. Less than half (43.8%) mentioned current screening guidelines. PrCA content is inconsistent on Web 2.0 sites. Future research should assess the readability and usability of Web 2.0 cancer resources.

  20. Examining the Presence of Social Media on University Web Sites

    ERIC Educational Resources Information Center

    Greenwood, Grant

    2012-01-01

    Over the past few years, social networking has exploded into a massive medium that has captured the attention of a large portion of the American population. The ever-growing social networking site(s) (SNS) movement has filled a networking gap and thus, has presented higher education institutions with unique opportunities (Reid 2009) to further…

  1. Web Services-Based Access to Local Clinical Trial Databases: A Standards Initiative of the Association of American Cancer Institutes

    PubMed Central

    Stahl, Douglas C.; Evans, Richard M.; Afrin, Lawrence B.; DeTeresa, Richard M.; Ko, Dave; Mitchell, Kevin

    2003-01-01

    Electronic discovery of the clinical trials being performed at a specific research center is a challenging task, which presently requires manual review of the center’s locally maintained databases or web pages of protocol listings. Near real-time automated discovery of available trials would increase the efficiency and effectiveness of clinical trial searching, and would facilitate the development of new services for information providers and consumers. Automated discovery efforts to date have been hindered by issues such as disparate database schemas, vocabularies, and standards for intersystem exchange of high-level data, but adequate infrastructure now exists that makes possible the development of applications for near real-time automated discovery of trials. This paper describes the current state (design and implementation) of the Web Services Specification for Publication and Discovery of Clinical Trials as developed by the Technology Task Force of the Association of American Cancer Institutes. The paper then briefly discusses a prototype web service-based application that implements the specification. Directions for evolution of this specification are also discussed. PMID:14728248

  2. Web services-based access to local clinical trial databases: a standards initiative of the Association of American Cancer Institutes.

    PubMed

    Stahl, Douglas C; Evans, Richard M; Afrin, Lawrence B; DeTeresa, Richard M; Ko, Dave; Mitchell, Kevin

    2003-01-01

    Electronic discovery of the clinical trials being performed at a specific research center is a challenging task, which presently requires manual review of the center's locally maintained databases or web pages of protocol listings. Near real-time automated discovery of available trials would increase the efficiency and effectiveness of clinical trial searching, and would facilitate the development of new services for information providers and consumers. Automated discovery efforts to date have been hindered by issues such as disparate database schemas, vocabularies, and insufficient standards for easy intersystem exchange of high-level data, but adequate infrastructure now exists that make possible the development of applications for near real-time automated discovery of trials. This paper describes the current state (design and implementation) of the Web Services Specification for Publication and Discovery of Clinical Trials as developed by the Technology Task Force of the Association of American Cancer Institutes. The paper then briefly discusses a prototype web service-based application that implements the specification. Directions for evolution of this specification are also discussed.

  3. PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values.

    PubMed

    Toseland, Christopher P; McSparron, Helen; Davies, Matthew N; Flower, Darren R

    2006-01-01

    The Protein pK(a) Database (PPD) v1.0 provides a compendium of protein residue-specific ionization equilibria (pK(a) values), as collated from the primary literature, in the form of a web-accessible postgreSQL relational database. Ionizable residues play key roles in the molecular mechanisms that underlie many biological phenomena, including protein folding and enzyme catalysis. The PPD serves as a general protein pK(a) archive and as a source of data that allows for the development and improvement of pK(a) prediction systems. The database is accessed through an HTML interface, which offers two fast, efficient search methods: an amino acid-based query and a Basic Local Alignment Search Tool search. Entries also give details of experimental techniques and links to other key databases, such as National Center for Biotechnology Information and the Protein Data Bank, providing the user with considerable background information. The database can be found at the following URL: http://www.jenner.ac.uk/PPD. PMID:16381845

  4. ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery.

    PubMed

    Meireles, Lidio M C; Dömling, Alexander S; Camacho, Carlos J

    2010-07-01

    ANCHOR is a web-based tool whose aim is to facilitate the analysis of protein-protein interfaces with regard to its suitability for small molecule drug design. To this end, ANCHOR exploits the so-called anchor residues, i.e. amino acid side-chains deeply buried at protein-protein interfaces, to indicate possible druggable pockets to be targeted by small molecules. For a given protein-protein complex submitted by the user, ANCHOR calculates the change in solvent accessible surface area (DeltaSASA) upon binding for each side-chain, along with an estimate of its contribution to the binding free energy. A Jmol-based tool allows the user to interactively visualize selected anchor residues in their pockets as well as the stereochemical properties of the surrounding region such as hydrogen bonding. ANCHOR includes a Protein Data Bank (PDB) wide database of pre-computed anchor residues from more than 30,000 PDB entries with at least two protein chains. The user can query according to amino acids, buried area (SASA), energy or keywords related to indication areas, e.g. oncogene or diabetes. This database provides a resource to rapidly assess protein-protein interactions for the suitability of small molecules or fragments with bioisostere anchor analogues as possible compounds for pharmaceutical intervention. ANCHOR web server and database are freely available at http://structure.pitt.edu/anchor.

  5. Real time access to commercial microwave link data: Details of the data acquisition software, the database and its web frontend

    NASA Astrophysics Data System (ADS)

    Keis, Felix; Chwala, Christian; Kunstmann, Harald

    2015-04-01

    Using commercial microwave link networks for precipitation estimation has become popular in the last years. Acquiring the necessary data from the network operators is however still difficult. Usually, data is provided to researches with large temporal delay and at irregular basis. Driven by the demand to facilitate this data accessibility, a custom acquisition software for microwave links has been developed in joint cooperation with our industry partner Ericsson. It is capable of recording data from a great number of microwave links simultaneously and of forwarding the data instantaneously to a newly established KIT-internal database. It makes use of the Simple Network Management Protocol (SNMP) and collects the transmitter and receiver power levels via asynchronous SNMP requests. The software is currently in its first operational test phase, recording data from several hundred Ericsson microwave links in southern Germany. Furthermore the software is used to acquire data with 1 Hz temporal resolution from four microwave links operated by the skiing resort in Garmisch-Partenkirchen. For convenient accessibility of this amount of data we have developed a web frontend for the emerging microwave link database. It provides dynamic real time visualization and basic processing of the recorded transmitter and receiver power levels. Here we will present details of the custom data acquisition software with focus on the design of the KIT microwave link database and on the specifically developed web frontend.

  6. COPPA (Children's Online Privacy Protection Act): The First Year--A Survey of Sites. A Report on Web Site Compliance.

    ERIC Educational Resources Information Center

    Center for Media Education, Washington, DC.

    The Children's Online Privacy Protection Act (COPPA) went into effect on April 21, 2000. The first Federal online privacy law, COPPA regulates the collection, use, and disclosure by commercial Web sites and online services of personally identifiable information from children under age 13. To mark the first anniversary of COPPA's implementation, a…

  7. A content analysis of Web sites promoting smoking culture and lifestyle.

    PubMed

    Ribisl, Kurt M; Lee, Rebecca E; Henriksen, Lisa; Haladjian, Harry H

    2003-02-01

    The present study examined smoking culture and lifestyle Web sites listed on Yahoo!, a popular Internet search catalog, to determine whether the sites were easily accessible to youth, featured age or health warnings, and mentioned specific tobacco brands. A content analysis of photographs on these sites assessed the demographics of individuals depicted and the amount of smoking and nudity in the photographs. The sample included 30 Web sites, all of which were accessible to youth and did not require age verification services to enter them. Cigarette brand names were mentioned in writing on 35% of the sites, and brand images were present on 24% of the sites. Nearly all of the photographs (95%) depicted smoking, 92% featured women, and 7% contained partial or full nudity. These results underscore the need for greater research and monitoring of smoking-related Internet content by health educators and tobacco control advocates. PMID:12564668

  8. RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites

    PubMed Central

    Zhang, Yaou; Sun, Zhirong

    2016-01-01

    N6-Methyladenosine (m6A) is the most common mRNA modification; it occurs in a wide range of taxon and is associated with many key biological processes. High-throughput experiments have identified m6A-peaks and sites across the transcriptome, but studies of m6A sites at the transcriptome-wide scale are limited to a few species and tissue types. Therefore, the computational prediction of mRNA m6A sites has become an important strategy. In this study, we integrated multiple features of mRNA (flanking sequences, local secondary structure information, and relative position information) and trained a SVM classifier to predict m6A sites in mammalian mRNA sequences. Our method achieves ideal performance in both cross-validation tests and rigorous independent dataset tests. The server also provides a comprehensive database of predicted transcriptome-wide m6A sites and curated m6A-seq peaks from the literature for both human and mouse, and these can be queried and visualized in a genome browser. The RNAMethPre web server provides a user-friendly tool for the prediction and query of mRNA m6A sites, which is freely accessible for public use at http://bioinfo.tsinghua.edu.cn/RNAMethPre/index.html. PMID:27723837

  9. The research of network database security technology based on web service

    NASA Astrophysics Data System (ADS)

    Meng, Fanxing; Wen, Xiumei; Gao, Liting; Pang, Hui; Wang, Qinglin

    2013-03-01

    Database technology is one of the most widely applied computer technologies, its security is becoming more and more important. This paper introduced the database security, network database security level, studies the security technology of the network database, analyzes emphatically sub-key encryption algorithm, applies this algorithm into the campus-one-card system successfully. The realization process of the encryption algorithm is discussed, this method is widely used as reference in many fields, particularly in management information system security and e-commerce.

  10. Emergency management communication on university Web sites: A 7-year study.

    PubMed

    Brown, Kelly L; Holguin, Gina; Scott, Tara Halbrook

    2016-01-01

    In the last several years, disasters-both manmade and natural-have taken their toll on college campuses. Extant research shows that college campuses have greatly increased their emergency management efforts. One area in which colleges and universities have made strides is emergency management communication. There has been some research examining emergency management communication across campuses, but there is still much to learn. This research fills a gap in this area by investigating the use of university Web sites to disseminate emergency management information to the university stakeholders. Data were gathered in 2007 and 2014 from the Web sites of public, 4-year universities in Indiana. The results show that universities are using the Internet to communicate emergency management information to their stakeholders. Among the most common categories of information available on the Web sites are links to other agencies, university response information, and threat levels. Implications for future research are discussed. PMID:27575641

  11. Characteristics of Experiential Education Web Sites of US Colleges and Schools of Pharmacy

    PubMed Central

    Leadon, Kim

    2013-01-01

    Objective. To evaluate the characteristics of experiential education Web sites of colleges and schools of pharmacy in the United States. Methods. The experiential education Web pages of 124 US colleges and schools of pharmacy were reviewed for office or program name, practice experience management software, experiential education newsletter, practice experience manual, preceptor development programs, new preceptor application processes, and interactive Web site interfaces. Results. The term “office of experiential education” was used by 27.4% of colleges and schools. Fifty percent of the colleges and schools used E-value as their practice experience management software. Only a minority of colleges and schools made experiential manual(s) available online, offered newsletters targeted to preceptors, and/or provided Web site interactive interfaces for preceptor communication. The Preceptors Training and Resource Network was the preceptor development program most frequently promoted. Conclusions. The majority of US colleges and schools of pharmacy have official Web sites for their experiential education program; however, few offer resources online or use interactive or social media to their advantage. PMID:23788807

  12. Dealing with an information overload of health science data: structured utilisation of libraries, distributed knowledge in databases and Web content.

    PubMed

    Hoelzer, Simon; Schweiger, Ralf K; Rieger, Joerg; Meyer, Michael

    2006-01-01

    The organizational structures of web contents and electronic information resources must adapt to the demands of a growing volume of information and user requirements. Otherwise the information society will be threatened by disinformation. The biomedical sciences are especially vulnerable in this regard, since they are strongly oriented toward text-based knowledge sources. Here sustainable improvement can only be achieved by using a comprehensive, integrated approach that not only includes data management but also specifically incorporates the editorial processes, including structuring information sources and publication. The technical resources needed to effectively master these tasks are already available in the form of the data standards and tools of the Semantic Web. They include Rich Site Summaries (RSS), which have become an established means of distributing and syndicating conventional news messages and blogs. They can also provide access to the contents of the previously mentioned information sources, which are conventionally classified as 'deep web' content. PMID:17108575

  13. Dealing with an information overload of health science data: structured utilisation of libraries, distributed knowledge in databases and Web content.

    PubMed

    Hoelzer, Simon; Schweiger, Ralf K; Rieger, Joerg; Meyer, Michael

    2006-01-01

    The organizational structures of web contents and electronic information resources must adapt to the demands of a growing volume of information and user requirements. Otherwise the information society will be threatened by disinformation. The biomedical sciences are especially vulnerable in this regard, since they are strongly oriented toward text-based knowledge sources. Here sustainable improvement can only be achieved by using a comprehensive, integrated approach that not only includes data management but also specifically incorporates the editorial processes, including structuring information sources and publication. The technical resources needed to effectively master these tasks are already available in the form of the data standards and tools of the Semantic Web. They include Rich Site Summaries (RSS), which have become an established means of distributing and syndicating conventional news messages and blogs. They can also provide access to the contents of the previously mentioned information sources, which are conventionally classified as 'deep web' content.

  14. Computer-Aided Protein Directed Evolution: a Review of Web Servers, Databases and other Computational Tools for Protein Engineering.

    PubMed

    Verma, Rajni; Schwaneberg, Ulrich; Roccatano, Danilo

    2012-01-01

    The combination of computational and directed evolution methods has proven a winning strategy for protein engineering. We refer to this approach as computer-aided protein directed evolution (CAPDE) and the review summarizes the recent developments in this rapidly growing field. We will restrict ourselves to overview the availability, usability and limitations of web servers, databases and other computational tools proposed in the last five years. The goal of this review is to provide concise information about currently available computational resources to assist the design of directed evolution based protein engineering experiment.

  15. The Web-Based DNA Vaccine Database DNAVaxDB and Its Usage for Rational DNA Vaccine Design.

    PubMed

    Racz, Rebecca; He, Yongqun

    2016-01-01

    A DNA vaccine is a vaccine that uses a mammalian expression vector to express one or more protein antigens and is administered in vivo to induce an adaptive immune response. Since the 1990s, a significant amount of research has been performed on DNA vaccines and the mechanisms behind them. To meet the needs of the DNA vaccine research community, we created DNAVaxDB ( http://www.violinet.org/dnavaxdb ), the first Web-based database and analysis resource of experimentally verified DNA vaccines. All the data in DNAVaxDB, which includes plasmids, antigens, vaccines, and sources, is manually curated and experimentally verified. This chapter goes over the detail of DNAVaxDB system and shows how the DNA vaccine database, combined with the Vaxign vaccine design tool, can be used for rational design of a DNA vaccine against a pathogen, such as Mycobacterium bovis.

  16. Using focus groups to guide development of a public health Web site.

    PubMed

    Henner, Terry A; Charles, Patricia

    2002-01-01

    This paper explores a project funded through the National Network of Libraries of Medicine to enhance effective use of the Internet by public health professionals. The processes and outcome of an effort to develop a statewide Web site for public health professionals are described. A series of focus groups was conducted as a preliminary data-gathering tool to evaluate the information needs of the target population. Results of the focus group provided a valuable framework upon which to build a successful schema for Web site development.

  17. AGU Launches Web Site for New Scientific Integrity and Professional Ethics Policy

    NASA Astrophysics Data System (ADS)

    Townsend, Randy

    2013-03-01

    AGU's Scientific Integrity and Professional Ethics policy, approved by the AGU Board of Directors and Council in December 2012, is now available online on a new Web site, http://ethics.agu.org. As the Web site states, the policy embodies a "set of guidelines for scientific integrity and professional ethics for the actions of the members and the governance of the Union in its internal activities; in its public persona; and most importantly, in the research and peer review processes of its scientific publications, its communications and outreach, and its scientific meetings."

  18. BAID: The Barrow Area Information Database - an interactive web mapping portal and cyberinfrastructure for scientific activities in the vicinity of Barrow, Alaska.

    NASA Astrophysics Data System (ADS)

    Cody, R. P.; Kassin, A.; Kofoed, K. B.; Copenhaver, W.; Laney, C. M.; Gaylord, A. G.; Collins, J. A.; Tweedie, C. E.

    2014-12-01

    The Barrow area of northern Alaska is one of the most intensely researched locations in the Arctic and the Barrow Area Information Database (BAID, www.barrowmapped.org) tracks and facilitates a gamut of research, management, and educational activities in the area. BAID is a cyberinfrastructure (CI) that details much of the historic and extant research undertaken within in the Barrow region in a suite of interactive web-based mapping and information portals (geobrowsers). The BAID user community and target audience for BAID is diverse and includes research scientists, science logisticians, land managers, educators, students, and the general public. BAID contains information on more than 12,000 Barrow area research sites that extend back to the 1940's and more than 640 remote sensing images and geospatial datasets. In a web-based setting, users can zoom, pan, query, measure distance, save or print maps and query results, and filter or view information by space, time, and/or other tags. Data are described with metadata that meet Federal Geographic Data Committee standards and are archived at the University Corporation for Atmospheric Research Earth Observing Laboratory (EOL) where non-proprietary BAID data can be freely downloaded. Recent advances include the addition of more than 2000 new research sites, provision of differential global position system (dGPS) and Unmanned Aerial Vehicle (UAV) support to visiting scientists, surveying over 80 miles of coastline to document rates of erosion, training of local GIS personal to better make use of science in local decision making, deployment and near real time connectivity to a wireless micrometeorological sensor network, links to Barrow area datasets housed at national data archives and substantial upgrades to the BAID website and web mapping applications.

  19. Prototype of an Integrated Hurricane Information System for Research: Design and Implementation of the Database and Web Portal

    NASA Astrophysics Data System (ADS)

    Li, P. P.; Knosp, B.; Vu, Q. A.; Hristova-Veleva, S.; Chao, Y.; Vane, D.; Lambrigtsen, B.; Su, H.; Dang, V.; Fovell, R.; Willis, J.; Tanelli, S.; Fishbein, E.; Ao, C. O.; Poulsen, W. L.; Park, K. J.; Fetzer, E.; Vazquez, J.; Callahan, P. S.; Marcus, S.; Garay, M.; Kahn, R.; Haddad, Z.

    2007-12-01

    Many hurricane websites provide historical hurricane information and real-time storm tracking. These sites often include images from various remote-sensing satellite sensors with such atmospheric and oceanic quantities as wind, temperature, rain, and water vapor. However, it has been determined that the hurricane analysis community is lacking a web portal that provides researchers a comprehensive set of observed hurricane parameters (both graphics and data) together with large-scale and convection-resolving model output. We have developed a prototype of an integrated hurricane information system of high-resolution satellite and in- situ observations along with model outputs pertaining to: i) the thermodynamic and microphysical structure of storms; ii) the air-sea interaction processes; iii) the larger-scale environment as depicted by quantities such as SST, ocean heat content and the aerosol loading of the environment. Our goal is to provide a one-stop place to access all the available information of a specific hurricane for researchers to advance the understanding, modeling and predication of hurricane genesis and intensity changes. Our hurricane information system prototype consists of high-resolution satellite data measuring three- dimensional atmospheric and oceanic parameters that includes observations from AIRS, MISR, MODIS, CloudSAT, AMSR-E, TRMM, GOES, MLS, QuikSCAT, SeaWiFS, and COSMIC GPS, in-situ observations such as ARGO floats, large scale data assimilation products from NCEP, and high resolution hurricane model output from WRF. High-resolution satellite data are sub-setted within 2000-kilometer-square area centered at the closest storm location and large-scale environmental datasets are divided into 6 predefined geographical regions. When accessing this hurricane portal, users may browse through data by year, region, category, and hurricane. At the front page, we show the hurricane track using Google Map. Users may pan and zoom, or click on the track

  20. Internet Public Library: Native American Authors. Web Site Review Essay.

    ERIC Educational Resources Information Center

    Walent, Jane Hurley

    1998-01-01

    The Native American Authors Internet Library, hosted by the Internet Public Library (an award-winning site maintained by the University of Michigan, Ann Arbor), presents five administrative and reference sections with numerous links, and three browsers covering 400 authors, 700 titles, and 200 tribes. Authenticity, accountability, credibility,…

  1. UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures.

    PubMed

    Lua, Rhonald C; Wilson, Stephen J; Konecki, Daniel M; Wilkins, Angela D; Venner, Eric; Morgan, Daniel H; Lichtarge, Olivier

    2016-01-01

    The structure and function of proteins underlie most aspects of biology and their mutational perturbations often cause disease. To identify the molecular determinants of function as well as targets for drugs, it is central to characterize the important residues and how they cluster to form functional sites. The Evolutionary Trace (ET) achieves this by ranking the functional and structural importance of the protein sequence positions. ET uses evolutionary distances to estimate functional distances and correlates genotype variations with those in the fitness phenotype. Thus, ET ranks are worse for sequence positions that vary among evolutionarily closer homologs but better for positions that vary mostly among distant homologs. This approach identifies functional determinants, predicts function, guides the mutational redesign of functional and allosteric specificity, and interprets the action of coding sequence variations in proteins, people and populations. Now, the UET database offers pre-computed ET analyses for the protein structure databank, and on-the-fly analysis of any protein sequence. A web interface retrieves ET rankings of sequence positions and maps results to a structure to identify functionally important regions. This UET database integrates several ways of viewing the results on the protein sequence or structure and can be found at http://mammoth.bcm.tmc.edu/uet/.

  2. dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions

    PubMed Central

    Wu, Jiaxin; Wu, Mengmeng; Li, Lianshuo; Liu, Zhuo; Zeng, Wanwen; Jiang, Rui

    2016-01-01

    The recent advancement of the next generation sequencing technology has enabled the fast and low-cost detection of all genetic variants spreading across the entire human genome, making the application of whole-genome sequencing a tendency in the study of disease-causing genetic variants. Nevertheless, there still lacks a repository that collects predictions of functionally damaging effects of human genetic variants, though it has been well recognized that such predictions play a central role in the analysis of whole-genome sequencing data. To fill this gap, we developed a database named dbWGFP (a database and web server of human whole-genome single nucleotide variants and their functional predictions) that contains functional predictions and annotations of nearly 8.58 billion possible human whole-genome single nucleotide variants. Specifically, this database integrates 48 functional predictions calculated by 17 popular computational methods and 44 valuable annotations obtained from various data sources. Standalone software, user-friendly query services and free downloads of this database are available at http://bioinfo.au.tsinghua.edu.cn/dbwgfp. dbWGFP provides a valuable resource for the analysis of whole-genome sequencing, exome sequencing and SNP array data, thereby complementing existing data sources and computational resources in deciphering genetic bases of human inherited diseases. PMID:26989155

  3. dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions.

    PubMed

    Wu, Jiaxin; Wu, Mengmeng; Li, Lianshuo; Liu, Zhuo; Zeng, Wanwen; Jiang, Rui

    2016-01-01

    The recent advancement of the next generation sequencing technology has enabled the fast and low-cost detection of all genetic variants spreading across the entire human genome, making the application of whole-genome sequencing a tendency in the study of disease-causing genetic variants. Nevertheless, there still lacks a repository that collects predictions of functionally damaging effects of human genetic variants, though it has been well recognized that such predictions play a central role in the analysis of whole-genome sequencing data. To fill this gap, we developed a database named dbWGFP (a database and web server of human whole-genome single nucleotide variants and their functional predictions) that contains functional predictions and annotations of nearly 8.58 billion possible human whole-genome single nucleotide variants. Specifically, this database integrates 48 functional predictions calculated by 17 popular computational methods and 44 valuable annotations obtained from various data sources. Standalone software, user-friendly query services and free downloads of this database are available at http://bioinfo.au.tsinghua.edu.cn/dbwgfp. dbWGFP provides a valuable resource for the analysis of whole-genome sequencing, exome sequencing and SNP array data, thereby complementing existing data sources and computational resources in deciphering genetic bases of human inherited diseases. PMID:26989155

  4. Evaluating the online activity of users of the e-Bug web site.

    PubMed

    de Quincey, Ed; Kostkova, Patty; Jawaheer, Gawesh; Farrell, David; McNulty, Cliodna A M; Weinberg, Julius

    2011-06-01

    Web server log analysis is being increasingly used to evaluate the user behaviour on healthcare resource web sites due to the detailed record of activity that they contain. This study aimed to use this information to evaluate the e-Bug web site, a healthcare resource that provides a range of educational resources about microbes, hand and respiratory hygiene, and antibiotics. This evaluation was conducted by analysing the web server logs of the e-Bug web site for the period January 2008 to November 2009, using a proprietary application named Sawmill. The e-Bug web site has had >900,000 page views generated from >88,000 users, with an increase in May 2009 during the swine flu epidemic and a further increase in September 2009 following the official launch of e-Bug. The majority of visitors were from the UK, but visits were recorded from 190 different countries. Word(®) document resources were downloaded >169,000 times, with the most popular being a swine flu factsheet. PowerPoint(®) document resources were downloaded >36,000 times, with the most popular relating to the 'chain of infection'. The majority of visitor referrals originated from search engines, with the most popular referral keywords being variations on the e-Bug name. The most common non-search engine referrals were from other healthcare resources and agencies. Use of the site has increased markedly since the official launch of e-Bug, with average page views of >200,000 per month, from a range of countries, illustrating the international demand for a teaching resource for microbes, hygiene and antibiotics.

  5. Biochemical View: A Web Site Providing Material for Teaching Biochemistry Using Multiple Approaches

    NASA Astrophysics Data System (ADS)

    Dórea, Fernanda C.; Rodrigues, Higor S.; Lapouble, Oscar M. M.; Pereira, Márcio R.; Castro, Mariana S.; Fontes, Wagner

    2007-11-01

    Computational resources are valuable tools for teaching biochemistry. Often, however, the necessary information is dispersed throughout several Web sites and many of the biochemistry software programs are only available commercially. Considering the difficulties of understanding abstract biochemical concepts, a Web site, Biochemical View (accessed Aug 2007) has been developed at the University of Brasília (UnB), Brazil. Its main goals are to complement course instruction and materials already in use, provide material to teachers preparing conventional and online courses, and—because free, full access is allowed—popularize the use of these resources in undergraduate courses. The contents, which include the usual metabolic pathways explaining the metabolism of carbohydrates, amino acids, lipids, and nucleic acids, are presented in two and three-dimensional formats, complemented with objective texts, schematics, and a description of regulation points. In this work, a new approach to metabolic pathways is employed, namely metabolic participation diagrams. In addition, experimental protocols for laboratory classes, study material, and detailed information about each molecule taking part in a specific metabolic pathway have been also made available in the Web site. The process of constructing the site is described and the results of students using this Web site are evaluated based on exam scores and survey forms, which show a significant improvement in students' success in learning biochemistry.

  6. Biofuel Database

    National Institute of Standards and Technology Data Gateway

    Biofuel Database (Web, free access)   This database brings together structural, biological, and thermodynamic data for enzymes that are either in current use or are being considered for use in the production of biofuels.

  7. TFBSshape: a motif database for DNA shape features of transcription factor binding sites

    PubMed Central

    Yang, Lin; Zhou, Tianyin; Dror, Iris; Mathelier, Anthony; Wasserman, Wyeth W.; Gordân, Raluca; Rohs, Remo

    2014-01-01

    Transcription factor binding sites (TFBSs) are most commonly characterized by the nucleotide preferences at each position of the DNA target. Whereas these sequence motifs are quite accurate descriptions of DNA binding specificities of transcription factors (TFs), proteins recognize DNA as a three-dimensional object. DNA structural features refine the description of TF binding specificities and provide mechanistic insights into protein–DNA recognition. Existing motif databases contain extensive nucleotide sequences identified in binding experiments based on their selection by a TF. To utilize DNA shape information when analysing the DNA binding specificities of TFs, we developed a new tool, the TFBSshape database (available at http://rohslab.cmb.usc.edu/TFBSshape/), for calculating DNA structural features from nucleotide sequences provided by motif databases. The TFBSshape database can be used to generate heat maps and quantitative data for DNA structural features (i.e., minor groove width, roll, propeller twist and helix twist) for 739 TF datasets from 23 different species derived from the motif databases JASPAR and UniPROBE. As demonstrated for the basic helix-loop-helix and homeodomain TF families, our TFBSshape database can be used to compare, qualitatively and quantitatively, the DNA binding specificities of closely related TFs and, thus, uncover differential DNA binding specificities that are not apparent from nucleotide sequence alone. PMID:24214955

  8. The OAuth 2.0 Web Authorization Protocol for the Internet Addiction Bioinformatics (IABio) Database.

    PubMed

    Choi, Jeongseok; Kim, Jaekwon; Lee, Dong Kyun; Jang, Kwang Soo; Kim, Dai-Jin; Choi, In Young

    2016-03-01

    Internet addiction (IA) has become a widespread and problematic phenomenon as smart devices pervade society. Moreover, internet gaming disorder leads to increases in social expenditures for both individuals and nations alike. Although the prevention and treatment of IA are getting more important, the diagnosis of IA remains problematic. Understanding the neurobiological mechanism of behavioral addictions is essential for the development of specific and effective treatments. Although there are many databases related to other addictions, a database for IA has not been developed yet. In addition, bioinformatics databases, especially genetic databases, require a high level of security and should be designed based on medical information standards. In this respect, our study proposes the OAuth standard protocol for database access authorization. The proposed IA Bioinformatics (IABio) database system is based on internet user authentication, which is a guideline for medical information standards, and uses OAuth 2.0 for access control technology. This study designed and developed the system requirements and configuration. The OAuth 2.0 protocol is expected to establish the security of personal medical information and be applied to genomic research on IA. PMID:27103887

  9. The OAuth 2.0 Web Authorization Protocol for the Internet Addiction Bioinformatics (IABio) Database.

    PubMed

    Choi, Jeongseok; Kim, Jaekwon; Lee, Dong Kyun; Jang, Kwang Soo; Kim, Dai-Jin; Choi, In Young

    2016-03-01

    Internet addiction (IA) has become a widespread and problematic phenomenon as smart devices pervade society. Moreover, internet gaming disorder leads to increases in social expenditures for both individuals and nations alike. Although the prevention and treatment of IA are getting more important, the diagnosis of IA remains problematic. Understanding the neurobiological mechanism of behavioral addictions is essential for the development of specific and effective treatments. Although there are many databases related to other addictions, a database for IA has not been developed yet. In addition, bioinformatics databases, especially genetic databases, require a high level of security and should be designed based on medical information standards. In this respect, our study proposes the OAuth standard protocol for database access authorization. The proposed IA Bioinformatics (IABio) database system is based on internet user authentication, which is a guideline for medical information standards, and uses OAuth 2.0 for access control technology. This study designed and developed the system requirements and configuration. The OAuth 2.0 protocol is expected to establish the security of personal medical information and be applied to genomic research on IA.

  10. The OAuth 2.0 Web Authorization Protocol for the Internet Addiction Bioinformatics (IABio) Database

    PubMed Central

    Choi, Jeongseok; Kim, Jaekwon; Lee, Dong Kyun; Jang, Kwang Soo; Kim, Dai-Jin

    2016-01-01

    Internet addiction (IA) has become a widespread and problematic phenomenon as smart devices pervade society. Moreover, internet gaming disorder leads to increases in social expenditures for both individuals and nations alike. Although the prevention and treatment of IA are getting more important, the diagnosis of IA remains problematic. Understanding the neurobiological mechanism of behavioral addictions is essential for the development of specific and effective treatments. Although there are many databases related to other addictions, a database for IA has not been developed yet. In addition, bioinformatics databases, especially genetic databases, require a high level of security and should be designed based on medical information standards. In this respect, our study proposes the OAuth standard protocol for database access authorization. The proposed IA Bioinformatics (IABio) database system is based on internet user authentication, which is a guideline for medical information standards, and uses OAuth 2.0 for access control technology. This study designed and developed the system requirements and configuration. The OAuth 2.0 protocol is expected to establish the security of personal medical information and be applied to genomic research on IA. PMID:27103887

  11. Quantum Isostere Database: a web-based tool using quantum chemical topology to predict bioisosteric replacements for drug design.

    PubMed

    Devereux, Mike; Popelier, Paul L A; McLay, Iain M

    2009-06-01

    This paper introduces the 'Quantum Isostere Database' (QID), a Web-based tool designed to find bioisosteric fragment replacements for lead optimization using stored ab initio data. A wide range of original geometric, electronic, and calculated physical properties are stored for each fragment. Physical descriptors with clear meaning are chosen, such as distribution of electrostatic potential energy values across a fragment surface and geometric parameters to describe fragment conformation and shape from ab initio structures. Further fundamental physical properties are linked to broader chemical characteristics relevant to biological activity, such as H-bond donor and acceptor strengths. Additional properties with less easily interpretable links to biological activity are also stored to allow future development of QSAR/QSPR models for quantities such as pK(a) and solubility. Conformational dependence of the ab initio descriptors is explicitly dealt with by storing properties for a variety of low-energy conformers of each fragment. Capping groups are used in ab initio calculations to represent different chemical environments, based on background research into transferability of electronic descriptors [J. Comput. Chem. 2009, 30, 1300-1318]. The resulting database has a Web interface that allows medicinal chemists to enter a query fragment, select important chemical features, and retrieve a list of suggested replacements with similar chemical characteristics. Examples of known bioisosteric replacements correctly identified by the QID tool are given.

  12. EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration

    PubMed Central

    Forment, Javier; Gilabert, Francisco; Robles, Antonio; Conejero, Vicente; Nuez, Fernando; Blanca, Jose M

    2008-01-01

    Background Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotated to remove low-quality and vector regions, eliminate redundancy and sequencing errors, and provide biologically relevant information. In order to provide a suitable way of performing the different steps in the analysis of the ESTs, flexible computation pipelines adapted to the local needs of specific EST projects have to be developed. Furthermore, EST collections must be stored in highly structured relational databases available to researchers through user-friendly interfaces which allow efficient and complex data mining, thus offering maximum capabilities for their full exploitation. Results We have created EST2uni, an integrated, highly-configurable EST analysis pipeline and data mining software package that automates the pre-processing, clustering, annotation, database creation, and data mining of EST collections. The pipeline uses standard EST analysis tools and the software has a modular design to facilitate the addition of new analytical methods and their configuration. Currently implemented analyses include functional and structural annotation, SNP and microsatellite discovery, integration of previously known genetic marker data and gene expression results, and assistance in cDNA microarray design. It can be run in parallel in a PC cluster in order to reduce the time necessary for the analysis. It also creates a web site linked to the database, showing collection statistics, with complex query capabilities and tools for data mining and retrieval. Conclusion The software package presented here provides an efficient and complete bioinformatics tool for the management of EST collections which is very easy to adapt to the local needs of different EST projects. The code is freely available under the GPL license and can be obtained at . This site also provides detailed instructions for

  13. BAID: The Barrow Area Information Database - an interactive web mapping portal and cyberinfrastructure for scientific activities in the vicinity of Barrow, Alaska

    NASA Astrophysics Data System (ADS)

    Cody, R. P.; Kassin, A.; Gaylord, A.; Brown, J.; Tweedie, C. E.

    2012-12-01

    The Barrow area of northern Alaska is one of the most intensely researched locations in the Arctic. The Barrow Area Information Database (BAID, www.baidims.org) is a cyberinfrastructure (CI) that details much of the historic and extant research undertaken within in the Barrow region in a suite of interactive web-based mapping and information portals (geobrowsers). The BAID user community and target audience for BAID is diverse and includes research scientists, science logisticians, land managers, educators, students, and the general public. BAID contains information on more than 9,600 Barrow area research sites that extend back to the 1940's and more than 640 remote sensing images and geospatial datasets. In a web-based setting, users can zoom, pan, query, measure distance, and save or print maps and query results. Data are described with metadata that meet Federal Geographic Data Committee standards and are archived at the University Corporation for Atmospheric Research Earth Observing Laboratory (EOL) where non-proprietary BAID data can be freely downloaded. BAID has been used to: Optimize research site choice; Reduce duplication of science effort; Discover complementary and potentially detrimental research activities in an area of scientific interest; Re-establish historical research sites for resampling efforts assessing change in ecosystem structure and function over time; Exchange knowledge across disciplines and generations; Facilitate communication between western science and traditional ecological knowledge; Provide local residents access to science data that facilitates adaptation to arctic change; (and) Educate the next generation of environmental and computer scientists. This poster describes key activities that will be undertaken over the next three years to provide BAID users with novel software tools to interact with a current and diverse selection of information and data about the Barrow area. Key activities include: 1. Collecting data on research

  14. Adapting the Content of Cancer Web Sites to the Information Needs of Patients: Reliability and Readability

    PubMed Central

    Bermúdez-Tamayo, Clara; Pernett, Jaime Jiménez; Garcia-Gutierrez, Jose Francisco; Cózar-Olmo, José Manuel; Valero-Aguilera, Beatriz

    2013-01-01

    Abstract Background: People who use the Internet to research health topics do not usually find all the information they need and do not trust what they read. This study was designed to assess the reliability, accessibility, readability, and popularity of cancer Web sites in Spanish and to analyze the suitability of Web site content in accordance with the specific information needs of cancer patients. Materials and Methods: This was a two-phase, cross-sectional, descriptive study. The first phase involved data gathering through online searches and direct observation. The second phase involved individual structured interviews with 169 patients with breast, prostate, bladder, and kidney cancer. Spearman rank correlations were calculated between variables. Results: Most sites belonged to nonprofit organizations, followed by universities or medical centers (14%). Thirty-one percent of the Web sites had quality seals, 59% provided details of authorship, 62% provided references to bibliographic sources, 38% identified their funding sources, and 54% showed the date of their last update. Twenty-one percent of the Web sites did not meet the minimum accessibility criteria. With regard to readability, 24% of the texts were considered to be “quite difficult.” Patients' information needs vary depending on the type of cancer they have, although all patients want to know about the likelihood of a cure, survival rates, the side effects, and risks of treatment. Conclusions: The health information on cancer available on the Internet in Spanish is not very reliable, accessible, or readable and is not necessarily the information that breast, kidney, prostate, and bladder cancer patients require. The content of cancer Web sites needs to be assessed according to the information needs of patients. PMID:24073899

  15. DB-Suite: Experiences with Three Intelligent, Web-Based Database Tutors

    ERIC Educational Resources Information Center

    Mitrovic, Antonija; Suraweera, Pramuditha; Martin, Brent; Weerasinghe, Amali

    2004-01-01

    E-learning is becoming more and more popular with the widespread use of computers and the Internet in educational institutions. Current e-learning courses are nearly always developed using course management systems (CMS), such as WebCT or Blackboard. Although CMS tools provide support for some administrative tasks and enable instructors to provide…

  16. Information Retrieval Strategies of Millennial Undergraduate Students in Web and Library Database Searches

    ERIC Educational Resources Information Center

    Porter, Brandi

    2009-01-01

    Millennial students make up a large portion of undergraduate students attending colleges and universities, and they have a variety of online resources available to them to complete academically related information searches, primarily Web based and library-based online information retrieval systems. The content, ease of use, and required search…

  17. A Pilot Study of the Interface Design of Cross-Cultural Web Sites through Usability Testing of Multilanguage Web Sites and Determining the Preferences of Taiwanese and American Users

    ERIC Educational Resources Information Center

    Ku, David Tawei; Chang, Chia-Chi

    2014-01-01

    By conducting usability testing on a multilanguage Web site, this study analyzed the cultural differences between Taiwanese and American users in the performance of assigned tasks. To provide feasible insight into cross-cultural Web site design, Microsoft Office Online (MOO) that supports both traditional Chinese and English and contains an almost…

  18. TIBS: a web database to browse gene expression in irritable bowel syndrome.

    PubMed

    Yan, Jing; Xu, Yan; Hu, Brian; Alnajm, Sammy; Liu, Lina; Lu, Yin; Sun, Zhiguang; Cheng, Feng

    2014-08-01

    Irritable bowel syndrome (IBS) is a chronic functional gastrointestinal disorder. Its symptoms include chronic abdominal pain, bloating gas, diarrhea and constipation. Many IBS patients also have psychological symptoms like depression or anxiety. These unpleasant symptoms significantly lower patients׳ quality of life. The prevalence of IBS in Europe and North America is about 10-15% of the population, which makes IBS a disorder with a high social cost. The pathophysiology of IBS is considered to be multifactorial and the exact cause of the disease remains poorly understood. Recently, a genome-wide expression microarray technique has been applied to investigate the possible mechanisms of IBS. However, a user-friendly database that allows scientists without bioinformatics background to query gene expression levels in these data sets and compare gene expression patterns across different tissues has not yet been established. Therefore, we have integrated four public expression microarray data (320 samples) from the Gene Expression Omnibus (GEO) and ArrayExpress databases into an online database called Transcriptome of Irritable Bowel Syndrome (TIBS). The gene expression change in IBS patients compared to healthy volunteers or UC patients in jejunum, sigmoid colon, rectum, and descending colon can be queried by gene symbols. Users can compare gene expression levels of IBS patients across these tissues. Sex difference of gene expression in IBS patients was also shown in the database. The current version of TIBS database contains 42,400 annotated gene probe sets represented on the Affymetrix Human Genome U133 plus 2.0 platform. TIBS will be an invaluable resource for a better understanding of the pathogenesis of IBS at the molecular level and for drug development. The TIBS database is available online at http://www.chengfeng.info/tibs_database.html.

  19. Google Scholar Goes to School: The Presence of Google Scholar on College and University Web Sites

    ERIC Educational Resources Information Center

    Neuhaus, Chris; Neuhaus, Ellen; Asher, Alan

    2008-01-01

    This study measured the degree of Google Scholar adoption within academia by analyzing the frequency of Google Scholar appearances on 948 campus and library Web sites, and by ascertaining the establishment of link resolution between Google Scholar and library resources. Results indicate a positive correlation between the implementation of Google…

  20. Social Networking Web Sites and Human Resource Personnel: Suggestions for Job Searches

    ERIC Educational Resources Information Center

    Roberts, Sherry J.; Roach, Terry

    2009-01-01

    Social Networking Web sites (SNWs) are now being used as reference checks by human resource personnel. For this reason, SNW users, particularly university students and other soon-to-be job applicants, should ask the following questions: Am I loading information that I want the world to see? Is this really a picture that shows me in the best light?…