Toward a quantitative and empirical dissolved organic carbon budget for the Gulf of Maine, a semienclosed shelf sea

NASA Astrophysics Data System (ADS)

Balch, William; Huntington, Thomas; Aiken, George; Drapeau, David; Bowler, Bruce; Lubelczyk, Laura; Butler, Kenna

2016-02-01

A time series of organic carbon export from Gulf of Maine (GoM) watersheds was compared to a time series of biological, chemical, bio-optical, and hydrographic properties, measured across the GoM between Yarmouth, NS, Canada, and Portland, ME, U.S. Optical proxies were used to quantify the dissolved organic carbon (DOC) and particulate organic carbon in the GoM. The Load Estimator regression model applied to river discharge data demonstrated that riverine DOC export (and its decadal variance) has increased over the last 80 years. Several extraordinarily wet years (2006-2010) resulted in a massive pulse of chromophoric dissolved organic matter (CDOM; proxy for DOC) into the western GoM along with unidentified optically scattering material (<0.2 µm diameter). A survey of DOC in the GoM and Scotian Shelf showed the strong influence of the Gulf of Saint Lawrence on the DOC that enters the GoM. A deep plume of CDOM-rich water was observed near the coast of Maine which decreased in concentration eastward. The Forel-Ule color scale was derived and compared to the same measurements made in 1912-1913 by Henry Bigelow. Results show that the GoM has yellowed in the last century, particularly in the region of the extension of the Eastern Maine Coastal Current. Time lags between DOC discharge and its appearance in the GoM increased with distance from the river mouths. Algae were also a significant source of DOC but not CDOM. Gulf-wide algal primary production has decreased. Increases in precipitation and DOC discharge to the GoM are predicted over the next century.

Toward a quantitative and empirical dissolved organic carbon budget for the Gulf of Maine, a semienclosed shelf sea

USGS Publications Warehouse

Balch, William; Huntington, Thomas G.; Aiken, George R.; Drapeau, David; Bowler, Bruce; Lubelczyk, Laura; Butler, Kenna D.

2016-01-01

A time series of organic carbon export from Gulf of Maine (GoM) watersheds was compared to a time series of biological, chemical, bio-optical, and hydrographic properties, measured across the GoM between Yarmouth, NS, Canada, and Portland, ME, U.S. Optical proxies were used to quantify the dissolved organic carbon (DOC) and particulate organic carbon in the GoM. The Load Estimator regression model applied to river discharge data demonstrated that riverine DOC export (and its decadal variance) has increased over the last 80 years. Several extraordinarily wet years (2006–2010) resulted in a massive pulse of chromophoric dissolved organic matter (CDOM; proxy for DOC) into the western GoM along with unidentified optically scattering material (<0.2 μm diameter). A survey of DOC in the GoM and Scotian Shelf showed the strong influence of the Gulf of Saint Lawrence on the DOC that enters the GoM. A deep plume of CDOM-rich water was observed near the coast of Maine which decreased in concentration eastward. The Forel-Ule color scale was derived and compared to the same measurements made in 1912–1913 by Henry Bigelow. Results show that the GoM has yellowed in the last century, particularly in the region of the extension of the Eastern Maine Coastal Current. Time lags between DOC discharge and its appearance in the GoM increased with distance from the river mouths. Algae were also a significant source of DOC but not CDOM. Gulf-wide algal primary production has decreased. Increases in precipitation and DOC discharge to the GoM are predicted over the next century.

Future export of particulate and dissolved organic carbon from land to coastal zones of the Baltic Sea

NASA Astrophysics Data System (ADS)

Strååt, Kim Dahlgren; Mörth, Carl-Magnus; Undeman, Emma

2018-01-01

The Baltic Sea is a semi-enclosed brackish sea in Northern Europe with a drainage basin four times larger than the sea itself. Riverine organic carbon (Particulate Organic Carbon, POC and Dissolved Organic Carbon, DOC) dominates carbon input to the Baltic Sea and influences both land-to-sea transport of nutrients and contaminants, and hence the functioning of the coastal ecosystem. The potential impact of future climate change on loads of POC and DOC in the Baltic Sea drainage basin (BSDB) was assessed using a hydrological-biogeochemical model (CSIM). The changes in annual and seasonal concentrations and loads of both POC and DOC by the end of this century were predicted using three climate change scenarios and compared to the current state. In all scenarios, overall increasing DOC loads, but unchanged POC loads, were projected in the north. In the southern part of the BSDB, predicted DOC loads were not significantly changing over time, although POC loads decreased in all scenarios. The magnitude and significance of the trends varied with scenario but the sign (+ or -) of the projected trends for the entire simulation period never conflicted. Results were discussed in detail for the "middle" CO2 emission scenario (business as usual, a1b). On an annual and entire drainage basin scale, the total POC load was projected to decrease by ca 7% under this scenario, mainly due to reduced riverine primary production in the southern parts of the BSDB. The average total DOC load was not predicted to change significantly between years 2010 and 2100 due to counteracting decreasing and increasing trends of DOC loads to the six major sub-basins in the Baltic Sea. However, predicted seasonal total loads of POC and DOC increased significantly by ca 46% and 30% in winter and decreased by 8% and 21% in summer over time, respectively. For POC the change in winter loads was a consequence of increasing soil erosion and a shift in duration of snowfall and onset of the spring flood impacting the input of terrestrial litter, while reduced primary production mainly explained the differences predicted in summer. The simulations also showed that future changes in POC and DOC export can vary significantly across the different sub-basins of the Baltic Sea. These changes in organic carbon input may impact future coastal food web structures e.g. by influencing bacterial and phytoplankton production in coastal zones, which in turn may have consequences at higher trophic levels.

Aps and Tep Chemical Characterization: Link Between The Dom and Pom Pools

NASA Astrophysics Data System (ADS)

Gogou, A.; Repeta, D. J.

The ocean inventory of dissolved organic carbon (DOC) is approximately 750 GT, comprising one of the Earth's largest carbon reservoirs on Earth. Despite its potential significance, the mechanisms that lead to DOM production and to spatial and temporal variations of DOM concentration in the world ocean are poorly understood. Chemical characterization studies show that up to 50% of HMW DOM is a structurally well-defined class of acylated polysaccharides (APS), which exhibits novel molecular-level characteris tics. Although APS synthesis occurs in the euphotic zone, a large fraction of the marine inventory of APS (appr. 10-30 GT C), resides in the deep ocean, and is approximately equal in mass to the total marine inventory of particulate organic carbon. While radiocarbon dating of deep sea DOC yields very old apparent ages (4000-6000 ybp), radiocarbon measurements made by our group on individual APS sugars shows that APS in the deep ocean has a radiocarbon value of +56 per mil, equivalent to surface water POC and DIC. This is the first clear evidence for the presence of "young" DOC in the deep ocean. One mechanism that could be important for the rapid removal of APS from surface seawater is physical removal by macroaggregates. To investigate the significance of this mechanism, we studied the chemical composition of surface-active POM (TEP) produced naturally on surface waters and in laboratory experiments, after bubbling of HMW DOM isolated from algal cultures. 1H-NMR spectral properties and molecular-level distribution of neutral sugars in natural and artificially produced TEP closely resembled those observed for cultured and oceanic HMW DOM, while they are significantly different from those of suspended particulate matter in the ocean (Gogou and Repeta, 2000). The results of these experiments provide evidence that POM with similar chemical characteristics to HMW DOM can be produced from algal-derived DOM in the surface ocean.

Hidden cycle of dissolved organic carbon in the deep ocean.

PubMed

Follett, Christopher L; Repeta, Daniel J; Rothman, Daniel H; Xu, Li; Santinelli, Chiara

2014-11-25

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ(13)C and age via Δ(14)C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle.

Hidden cycle of dissolved organic carbon in the deep ocean

PubMed Central

Follett, Christopher L.; Repeta, Daniel J.; Rothman, Daniel H.; Xu, Li; Santinelli, Chiara

2014-01-01

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ13C and age via Δ14C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle. PMID:25385632

Spatial and seasonal variability of dissolved organic matter in the Cariaco Basin

NASA Astrophysics Data System (ADS)

Lorenzoni, Laura; Taylor, Gordon T.; Benitez-Nelson, Claudia; Hansell, Dennis A.; Montes, Enrique; Masserini, Robert; Fanning, Kent; Varela, Ramón; Astor, Yrene; GuzmáN, Laurencia; Muller-Karger, Frank E.

2013-06-01

organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) were measured monthly at the CARIACO Time Series station (10°30'N, 64°40'W) in the southeastern Caribbean Sea between 2005 and 2012. Marked seasonal variability in DOC concentrations was observed, with lower values (~66 µM) in the upper water column (<75 m) during the upwelling season (December-April) due to the injection of cool, DOC-impoverished Subtropical Underwater from the Caribbean Sea. During the rainy season (May-November) waters were stratified and upper layer DOC concentrations increased to ~71 µM. Interannual variability in surface (1 m) concentrations of DOC was also observed in response to the variable strength in upwelling and stratification that the Cariaco Basin experienced. DON and DOP showed no such seasonality. At depths >350 m, DOC concentrations were 56 ± 4.7 µM, roughly 10 µM higher than those in the Caribbean Sea over the same depth range. DON and DOP showed similar vertical profiles to that of DOC, with higher concentrations (6.8 ± 1.2 µM N and 0.15 ±0.09 µM P) in the upper water column and invariant, lower concentrations at depth (4.8 ± 1.6 µM N and 0.10 ± 0.08 µM P). Wind-driven advection of surface DOC out of the Cariaco Basin was estimated to support a net export ~15 Gmol C yr-1 into the Caribbean Sea; this rate is comparable to the flux of settling particulate organic carbon to depths >275 m within the basin.

Uncovering a Salt Giant. Deep-Sea Record of Mediterranean Messinian Events (DREAM) multi-phase drilling project

NASA Astrophysics Data System (ADS)

Camerlenghi, Angelo; Aoisi, Vanni; Lofi, Johanna; Hübscher, Christian; deLange, Gert; Flecker, Rachel; Garcia-Castellanos, Daniel; Gorini, Christian; Gvirtzman, Zohar; Krijgsman, Wout; Lugli, Stefano; Makowsky, Yizhaq; Manzi, Vinicio; McGenity, Terry; Panieri, Giuliana; Rabineau, Marina; Roveri, Marco; Sierro, Francisco Javier; Waldmann, Nicolas

2014-05-01

In May 2013, the DREAM MagellanPlus Workshop was held in Brisighella (Italy). The initiative builds from recent activities by various research groups to identify potential sites to perform deep-sea scientific drilling in the Mediterranean Sea across the deep Messinian Salinity Crisis (MSC) sedimentary record. In this workshop three generations of scientists were gathered: those who participated in formulation of the deep desiccated model, through DSDP Leg 13 drilling in 1973; those who are actively involved in present-day MSC research; and the next generation (PhD students and young post-docs). The purpose of the workshop was to identify locations for multiple-site drilling (including riser-drilling) in the Mediterranean Sea that would contribute to solve the several open questions still existing about the causes, processes, timing and consequences at local and planetary scale of an outstanding case of natural environmental change in the recent Earth history: the Messinian Salinity Crisis in the Mediterranean Sea. The product of the workshop is the identification of the structure of an experimental design of site characterization, riser-less and riser drilling, sampling, measurements, and down-hole analyses that will be the core for at least one compelling and feasible multiple phase drilling proposal. Particular focus has been given to reviewing seismic site survey data available from different research groups at pan-Mediterranean basin scale, to the assessment of additional site survey activity including 3D seismics, and to ways of establishing firm links with oil and gas industry. The scientific community behind the DREAM initiative is willing to proceed with the submission to IODP of a Multi-phase Drilling Project including several drilling proposals addressing specific drilling objectives, all linked to the driving objectives of the MSC drilling and understanding . A series of critical drilling targets were identified to address the still open questions related to the MSC event. Several proposal ideas also emerged to support the Multi-phase drilling project concept: Salt tectonics and fluids, Deep stratigraphic and crustal drilling in the Gulf of Lion (deriving from the GOLD drilling project), Deep stratigraphic and crustal drilling in the Ionian Sea, Deep Biosphere, Sapropels, and the Red Sea. A second MagellanPlus workshop held in January 2014 in Paris (France), has proceeded a step further towards the drafting of the Multi-phase Drilling Project and a set of pre-proposals for submission to IODP.

Biogeochemical and physical controls on the distribution of dissolved organic carbon in the deep Gulf of Mexico and basins of the Caribbean

NASA Astrophysics Data System (ADS)

Margolin, A. R.; Hansell, D. A.

2016-02-01

Over the past two decades, significant advances have been made in understanding dissolved organic carbon (DOC) distributions in the Atlantic and throughout the global ocean. Surprisingly, however, little is known about DOC distributions in the Atlantic's neighboring Gulf of Mexico (GoM) and Caribbean due to few observations, especially in their deep layers. To address the dearth of DOC data in the GoM and Caribbean, samples were collected during multiple cruises spanning the region, allowing comparisons between the deep layers of the basins. Additionally, complementary biogeochemical (oxygen, nutrients) and physical (temperature, salinity) measurements were made to aid in DOC interpretation, which show clear distinctions between the deep waters of the GoM, basins of the Caribbean and Atlantic. The unique characteristics of these deep layers result from exchanges being restricted to narrow passages that separate the basins, limiting the deep water renewal to periodic overflows of relatively dense water, capable of penetrating below the 2000 m sill depths. Furthermore, hydrocarbon seeps (in GoM) and hydrothermal activity (in Caribbean), along with the offshore oil industry have the potential to alter deep DOC concentrations regionally, which are considered here. Samples collected below 250 m show that concentrations decrease with depth, ranging from 40-50 µmol kg-1. Compared to the Atlantic, the GoM and Venezuelan Basin concentrations are lower, while they are similar to the Atlantic in the Yucatan Basin; responsible processes are inferred.

An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter

USGS Publications Warehouse

Green, Nelson W.; Perdue, E. Michael; Aiken, George R.; Butler, Kenna D.; Chen, Hongmei; Dittmar, Thorsten; Niggemann, Jutta; Stubbins, Aron

2014-01-01

Dissolved organic matter (DOM) was isolated from large volumes of deep (674 m) and surface (21 m) ocean water via reverse osmosis/electrodialysis (RO/ED) and two solid-phase extraction (SPE) methods (XAD-8/4 and PPL) at the Natural Energy Laboratory of Hawaii Authority (NELHA). By applying the three methods to common water samples, the efficiencies of XAD, PPL and RO/ED DOM isolation were compared. XAD recovered 42% of dissolved organic carbon (DOC) from deep water (25% with XAD-8; 17% with XAD-4) and 30% from surface water (16% with XAD-8; 14% with XAD-4). PPL recovered 61 ± 3% of DOC from deep water and 61% from surface water. RO/ED recovered 82 ± 3% of DOC from deep water, 14 ± 3% of which was recovered in a sodium hydroxide rinse, and 75 ± 5% of DOC from surface water, with 12 ± 2% in the sodium hydroxide rinse. The highest recoveries of all were achieved by the sequential isolation of DOC, first with PPL and then via RO/ED. This combined technique recovered 98% of DOC from a deep water sample and 101% of DOC from a surface water sample. In total, 1.9, 10.3 and 1.6 g-C of DOC were collected via XAD, PPL and RO/ED, respectively. Rates of DOC recovery using the XAD, PPL and RO/ED methods were 10, 33 and 10 mg-C h− 1, respectively. Based upon C/N ratios, XAD isolates were heavily C-enriched compared with water column DOM, whereas RO/ED and PPL ➔ RO/ED isolate C/N values were most representative of the original DOM. All techniques are suitable for the isolation of large amounts of DOM with purities suitable for most advanced analytical techniques. Coupling PPL and RO/ED techniques may provide substantial progress in the search for a method to quantitatively isolate oceanic DOC, bringing the entirety of the DOM pool within the marine chemist's analytical window.

Satellite-Derived Distributions, Inventories and Fluxes of Dissolved and Particulate Organic Matter Along the Northeastern U.S. Continental Margin

NASA Technical Reports Server (NTRS)

Mannino, A.; Hooker, S. B.; Hyde, K.; Novak, M. G.; Pan, X.; Friedrichs, M.; Cahill, B.; Wilkin, J.

2011-01-01

Estuaries and the coastal ocean experience a high degree of variability in the composition and concentration of particulate and dissolved organic matter (DOM) as a consequence of riverine and estuarine fluxes of terrigenous DOM, sediments, detritus and nutrients into coastal waters and associated phytoplankton blooms. Our approach integrates biogeochemical measurements, optical properties and remote sensing to examine the distributions and inventories of organic carbon in the U.S. Middle Atlantic Bight and Gulf of Maine. Algorithms developed to retrieve colored DOM (CDOM), Dissolved (DOC) and Particulate Organic Carbon (POC) from NASA's MODIS-Aqua and SeaWiFS satellite sensors are applied to quantify the distributions and inventories of DOC and POC. Horizontal fluxes of DOC and POC from the continental margin to the open ocean are estimated from SeaWiFS and MODIS-Aqua distributions of DOC and POC and horizontal divergence fluxes obtained from the Northeastern North Atlantic ROMS model. SeaWiFS and MODIS imagery reveal the importance of estuarine outflow to the export of CDOM and DOC to the coastal ocean and a net community production of DOC on the shelf.

Relationships between colored dissolved organic matter and dissolved organic carbon in different coastal gradients of the Baltic Sea.

PubMed

Harvey, E Therese; Kratzer, Susanne; Andersson, Agneta

2015-06-01

Due to high terrestrial runoff, the Baltic Sea is rich in dissolved organic carbon (DOC), the light-absorbing fraction of which is referred to as colored dissolved organic matter (CDOM). Inputs of DOC and CDOM are predicted to increase with climate change, affecting coastal ecosystems. We found that the relationships between DOC, CDOM, salinity, and Secchi depth all differed between the two coastal areas studied; the W Gulf of Bothnia with high terrestrial input and the NW Baltic Proper with relatively little terrestrial input. The CDOM:DOC ratio was higher in the Gulf of Bothnia, where CDOM had a greater influence on the Secchi depth, which is used as an indicator of eutrophication and hence important for Baltic Sea management. Based on the results of this study, we recommend regular CDOM measurements in monitoring programmes, to increase the value of concurrent Secchi depth measurements.

Surface accumulation of low molecular weight dissolved organic matter in surface waters and horizontal off-shelf spreading of nutrients and humic-like fluorescence in the Chukchi Sea of the Arctic Ocean.

PubMed

Chen, Meilian; Jung, Jinyoung; Lee, Yun Kyung; Hur, Jin

2018-05-23

Polar regions play unique roles in global overturning circulation, carbon cycling, and climate change. In this study, seawater dissolved organic matter (DOM) was characterized for the Chukchi Sea in the Arctic Ocean in the summer season. The seawater generally contains high concentrations of dissolved organic carbon (DOC, up to 92 μM C) and tyrosine-like fluorescence (up to 0.21 RU), and it was enriched with heteroatomic molecular formula with nitrogen-containing and sulfur-containing formulas counting 2246 (~41% of total identified molecular formula) and 1838 (~34%), respectively. Significant correlations were observed between salinity and the absorption coefficient at 254 nm, between chlorophyll-a and DOC as well as the tyrosine-like component, C 270/302 (C ex/em maxima), and between biological index and two protein-like components, C 275/338 and C 305/344 . A comparison between surface waters and close-to-seafloor deep waters suggested a trend of the accumulation of low molecular weight (LMW) fraction (~54-74%, nominal average molecular weight M n  < ~350 Da) in the surface waters. Another interesting finding from spatial data was an obvious horizontal off-shelf spreading of nutrients and humic-like fluorescence. This study sheds novel insights of DOM characteristics and dynamics in the highly productive polar sea. Copyright © 2018 Elsevier B.V. All rights reserved.

Source water controls on the character and origin of dissolved organic matter in streams of the Yukon River basin, Alaska

USGS Publications Warehouse

O'Donnell, Jonathan A.; Aiken, George R.; Kane, Evan S.; Jones, Jeremy B.

2010-01-01

Climate warming and permafrost degradation at high latitudes will likely impact watershed hydrology, and consequently, alter the concentration and character of dissolved organic carbon (DOC) in northern rivers. We examined seasonal variation of DOC chemistry in 16 streams of the Yukon River basin, Alaska. Our primary objective was to evaluate the relationship between source water (shallow versus deep groundwater flow paths) and DOC chemical composition. Using base cation chemistry and principal component analysis, we observed high contributions of deep groundwater to glacial and clearwater streams, whereas blackwater streams received larger contributions from shallow groundwater sources. DOC concentration and specific ultraviolet absorbance peaked during spring snowmelt in all streams, and were consistently higher in blackwater streams than in glacial and clearwater streams. The hydrophobic acid fraction of DOC dominated across all streams and seasons, comprising between 35% and 56% of total DOC. The hydrophilic acid fraction of DOC was more prominent in glacial (23% ± 3%) and clearwater streams (19% ± 1%) than in blackwater streams (16% ± 1%), and was enriched during winter base flow (29% ± 1%) relative to snowmelt and summer base flow. We observed that an increase in the contribution of deep groundwater to streamflow resulted in decreased DOC concentration, aromaticity, and DOC-to-dissolved organic nitrogen ratio, and an increase in the proportion of hydrophilic acids relative to hydrophobic acids. Our findings suggest that future permafrost degradation and higher contributions of groundwater to streamflow may result in a higher fraction of labile DOM in streams of the Yukon basin.

Physiological responses and lipid storage of the coral Lophelia pertusa at varying food density.

PubMed

Baussant, Thierry; Nilsen, Marianne; Ravagnan, Elisa; Westerlund, Stig; Ramanand, Sreerekha

2017-01-01

Despite the importance of the cold-water coral Lophelia pertusa to deep-sea reef ecosystem functioning, current knowledge of key physiological responses to available food resources is scarce. Scenarios with varying food density may help to understand how corals deal with seasonal variations in the dark ocean and might be used to study consequences of anthropogenic activities potentially affecting food availability. Thus, the physiological responses of L. pertusa to varying food (Artemia salina nauplii) concentration, ranging from 20% to 300% of carbon equivalent turned over by basal coral respiration, were investigated. A starvation group was also included. Measurements of respiration, growth, mucus production, and energy reserves (storage fatty acids) were performed at several time intervals over 26 weeks. In general, data showed a stronger effect of experimental time on measured responses, but no significant influence of food density treatment. In starved corals, respiration rate declined to 52% of initial respiration, while skeleton growth rate was maintained at the same rate as Artemia-fed corals throughout the investigation. Mucus production measured as the sum of dissolved organic carbon (DOC) and particulate organic carbon (POC) was also similar across food treatments, but POC production exceeded that of DOC at the highest food density. No marked effect was observed on storage fatty acids. These results confirm that L. pertusa is highly resilient to environmental conditions with suboptimal food densities over a time scale of months. Regulation of several physiological processes, including respiration and mucus production, possibly in combination with an opportunistic feeding strategy, contributed to this tolerance to maintain viable corals. Thus, it appears that L. pertusa is well adapted to life in the deep sea.

Contrasting composition of terrigenous organic matter in the dissolved, particulate and sedimentary organic carbon pools on the outer East Siberian Arctic Shelf

NASA Astrophysics Data System (ADS)

Salvadó, Joan A.; Tesi, Tommaso; Sundbom, Marcus; Karlsson, Emma; Kruså, Martin; Semiletov, Igor P.; Panova, Elena; Gustafsson, Örjan

2016-11-01

Fluvial discharge and coastal erosion of the permafrost-dominated East Siberian Arctic delivers large quantities of terrigenous organic carbon (Terr-OC) to marine waters. The composition and fate of the remobilized Terr-OC needs to be better constrained as it impacts the potential for a climate-carbon feedback. In the present study, the bulk isotope (δ13C and Δ14C) and macromolecular (lignin-derived phenols) composition of the cross-shelf exported organic carbon (OC) in different marine pools is evaluated. For this purpose, as part of the SWERUS-C3 expedition (July-September 2014), sediment organic carbon (SOC) as well as water column (from surface and near-bottom seawater) dissolved organic carbon (DOC) and particulate organic carbon (POC) samples were collected along the outer shelves of the Kara Sea, Laptev Sea and East Siberian Sea. The results show that the Lena River and the DOC may have a preferential role in the transport of Terr-OC to the outer shelf. DOC concentrations (740-3600 µg L-1) were 1 order of magnitude higher than POC (20-360 µg L-1), with higher concentrations towards the Lena River plume. The δ13C signatures in the three carbon pools varied from -23.9 ± 1.9 ‰ in the SOC, -26.1 ± 1.2 ‰ in the DOC and -27.1 ± 1.9 ‰ in the POC. The Δ14C values ranged between -395 ± 83 (SOC), -226 ± 92 (DOC) and -113 ± 122 ‰ (POC). These stable and radiocarbon isotopes were also different between the Laptev Sea and the East Siberian Sea. Both DOC and POC showed a depleted and younger trend off the Lena River plume. Further, the Pacific inflow and the sea-ice coverage, which works as a barrier preventing the input of "young" DOC and POC, seem to have a strong influence in these carbon pools, presenting older and more enriched δ13C signatures under the sea-ice extent. Lignin phenols exhibited higher OC-normalized concentrations in the SOC (0.10-2.34 mg g-1 OC) and DOC (0.08-2.40 mg g-1 OC) than in the POC (0.03-1.14 mg g-1 OC). The good relationship between lignin and Δ14C signatures in the DOC suggests that a significant fraction of the outer-shelf DOC comes from "young" Terr-OC. By contrast, the slightly negative correlation between lignin phenols and Δ14C signatures in POC, with higher lignin concentrations in older POC from near-bottom waters, may reflect the off-shelf transport of OC from remobilized permafrost in the nepheloid layer. Syringyl / vanillyl and cinnamyl / vannillyl phenol ratios presented distinct clustering between DOC, POC and SOC, implying that those pools may be carrying different Terr-OC of partially different origin. Moreover, 3,5-dihydroxybenzoic acid to vanillyl phenol ratios and p-coumaric acid to ferulic acid ratios, used as a diagenetic indicators, enhanced in POC and SOC, suggesting more degradation within these pools. Overall, the key contrast between enhanced lignin yields both in the youngest DOC and the oldest POC samples reflects a significant decoupling of terrestrial OC sources and pathways.

Structural properties of dissolved organic carbon in deep soil horizons of an arable and temporarily grassland.

NASA Astrophysics Data System (ADS)

Lavaud, A.; Chabbi, A.; Croue, J. P.

2009-04-01

It is commonly accepted that dissolved organic carbon (DOC) is the bio-available fraction of the largest amount of soil organic matter (SOM), even if it does represent only a very small proportion. Because most of the studies on DOC dynamics were mainly restricted to forest soils, studies on the factors governing the dynamics of DOC in deep soil horizons (>1 m) in arable system are still very little limited. The objective of this work is to better define the proportion of DOC in deep soil horizons and indicate their main characteristics and structural properties. The study was conducted on the long term observatory for environmental research- biogeochemical cycles and biodiversity Lusignan site). DOC collected using lysimeters plates inserted to a depth of 105 cm was fractionated into 3 fractions using the two column array of XAD-8 and XAD-4 resins. The HPO (hydrophobic) fraction (i.e. humic substances) isolated from the XAD-8 resin, the TPH (Transphilic) fraction from the XAD-4 resin and the HPI (hydrophilic) fraction which corresponds to the DOC that does not adsorbed onto the two resins under the acid condition used (pH 2). DOM adsorbed onto the resins is recovered with a 75%/25% acetonitrile/water mixture and lyophilized. Depend on the amount of material; the chemical composition of DOC was performed using UV254 nm, fluorescence EEM, NMR and HPSEC/UV/COD. The results show that the concentration and structural properties of DOC in deep soil horizon were similar to those of groundwater (low SUVA (1.2 m-1.L.mg C-1), structures composed mainly of low molecular weight). Because of the relatively recent establishment of the treatment, the monitoring of the dynamics of the DOC concentrations did not show significant differences between arable and grassland. However, the temporal dynamic shows a slight increase in the DOC content regardless of the of land use. DOC concentrations between winter and the middle of spring tend to double going from 1 to 2.5 mg / L and then to 4-5 mg / L in summer time. The structural analysis reveals significant input of terpenoid derived organic matter was confirmed in the HPO fraction of DOC a results supported by the data of 13C NMR, Infra Red and Micro Scale Sealed Vessel / pyrolysis GC / MS. The chromatographic profiles obtained by flash pyrolysis GC / MS highlight the presence of phenol and alkyl phenols, generally attributed to structures polyhydroxyaromatiques (lignin / tannins), but acetamide, pyrolysis product of amino sugars constituents of the wall microbial cells. The thermochimiolyse (TMAH) / GC / MS confirmed the presence of hydroxy aromatic structures in the extracts, however, their precise origin (lignin, tannins ...) remains uncertain. The results so far indicate that the DOC in deep soil horizons is marked by low aromaticity and dominated by small size molecules. This would consist of carbon derived from terpenoids, lignin degraded and amino sugars.

75 FR 78236 - Lock+TM

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-15

...-foot-wide, 20-foot-deep excavated power canal; (2) a 55-foot-long, 65-foot-wide, 8-foot-deep excavated... 18 CFR 385.2001(a)(1)(iii) and the instructions on the Commission's Web site http://www.ferc.gov/docs... Web site at http://www.ferc.gov/docs-filing/elibrary.asp . Enter the docket number (P-13743-000, 13753...

The impact of dissolved organic carbon and bacterial respiration on pCO2 in experimental sea ice

NASA Astrophysics Data System (ADS)

Zhou, J.; Kotovitch, M.; Kaartokallio, H.; Moreau, S.; Tison, J.-L.; Kattner, G.; Dieckmann, G.; Thomas, D. N.; Delille, B.

2016-02-01

Previous observations have shown that the partial pressure of carbon dioxide (pCO2) in sea ice brines is generally higher in Arctic sea ice compared to those from the Antarctic sea ice, especially in winter and early spring. We hypothesized that these differences result from the higher dissolved organic carbon (DOC) content in Arctic seawater: Higher concentrations of DOC in seawater would be reflected in a greater DOC incorporation into sea ice, enhancing bacterial respiration, which in turn would increase the pCO2 in the ice. To verify this hypothesis, we performed an experiment using two series of mesocosms: one was filled with seawater (SW) and the other one with seawater with an addition of filtered humic-rich river water (SWR). The addition of river water increased the DOC concentration of the water from a median of 142 μmol Lwater-1 in SW to 249 μmol Lwater-1 in SWR. Sea ice was grown in these mesocosms under the same physical conditions over 19 days. Microalgae and protists were absent, and only bacterial activity has been detected. We measured the DOC concentration, bacterial respiration, total alkalinity and pCO2 in sea ice and the underlying seawater, and we calculated the changes in dissolved inorganic carbon (DIC) in both media. We found that bacterial respiration in ice was higher in SWR: median bacterial respiration was 25 nmol C Lice-1 h-1 compared to 10 nmol C Lice-1 h-1 in SW. pCO2 in ice was also higher in SWR with a median of 430 ppm compared to 356 ppm in SW. However, the differences in pCO2 were larger within the ice interiors than at the surfaces or the bottom layers of the ice, where exchanges at the air-ice and ice-water interfaces might have reduced the differences. In addition, we used a model to simulate the differences of pCO2 and DIC based on bacterial respiration. The model simulations support the experimental findings and further suggest that bacterial growth efficiency in the ice might approach 0.15 and 0.2. It is thus credible that the higher pCO2 in Arctic sea ice brines compared with those from the Antarctic sea ice were due to an elevated bacterial respiration, sustained by higher riverine DOC loads. These conclusions should hold for locations and time frames when bacterial activity is relatively dominant compared to algal activity, considering our experimental conditions.

Algorithm Development and Validation for Satellite-Derived Distributions of DOC and CDOM in the US Middle Atlantic Bight

NASA Technical Reports Server (NTRS)

Mannino, Antonio; Russ, Mary E.; Hooker, Stanford B.

2007-01-01

In coastal ocean waters, distributions of dissolved organic carbon (DOC) and chromophoric dissolved organic matter (CDOM) vary seasonally and interannually due to multiple source inputs and removal processes. We conducted several oceanographic cruises within the continental margin of the U.S. Middle Atlantic Bight (MAB) to collect field measurements in order to develop algorithms to retrieve CDOM and DOC from NASA's MODIS-Aqua and SeaWiFS satellite sensors. In order to develop empirical algorithms for CDOM and DOC, we correlated the CDOM absorption coefficient (a(sub cdom)) with in situ radiometry (remote sensing reflectance, Rrs, band ratios) and then correlated DOC to Rrs band ratios through the CDOM to DOC relationships. Our validation analyses demonstrate successful retrieval of DOC and CDOM from coastal ocean waters using the MODIS-Aqua and SeaWiFS satellite sensors with mean absolute percent differences from field measurements of < 9 %for DOC, 20% for a(sub cdom)(355)1,6 % for a(sub cdom)(443), and 12% for the CDOM spectral slope. To our knowledge, the algorithms presented here represent the first validated algorithms for satellite retrieval of a(sub cdom) DOC, and CDOM spectral slope in the coastal ocean. The satellite-derived DOC and a(sub cdom) products demonstrate the seasonal net ecosystem production of DOC and photooxidation of CDOM from spring to fall. With accurate satellite retrievals of CDOM and DOC, we will be able to apply satellite observations to investigate interannual and decadal-scale variability in surface CDOM and DOC within continental margins and monitor impacts of climate change and anthropogenic activities on coastal ecosystems.

Seasonal variation in chromophoric dissolved organic matter and relationships among fluorescent components, absorption coefficients and dissolved organic carbon in the Bohai Sea, the Yellow Sea and the East China Sea

NASA Astrophysics Data System (ADS)

Zhu, Wen-Zhuo; Zhang, Hong-Hai; Zhang, Jing; Yang, Gui-Peng

2018-04-01

The absorption coefficient and fluorescent components of chromophoric dissolved organic matter (CDOM) in the Bohai Sea (BS), Yellow Sea (YS), and East China Sea (ECS) in spring and autumn were analyzed in this study. Excitation-emission matrices (EEMs) combined with parallel factor analysis (PARAFAC) identified three components, namely, humic-like C1, tyrosine-like C2 and tryptophan-like C3. The seasonal variations in the vertical patterns of the CDOM absorption coefficient (aCDOM(355)) and fluorescent components were influenced by the seasonal water mass except for the terrestrial input. The relationship between aCDOM(355) and dissolved organic matter (DOC) was attributed to their own mixing behavior. The correlation of the fluorescent components with DOC was disturbed by other non-conservative processes during the export of CDOM to the open ocean. The different chemical compositions and origins of DOC and CDOM led to variability in carbon-specific CDOM absorption (a*CDOM(355)) and fluorescent component ratios (ICn/IC1). The relationship between a*CDOM(355) and aCDOM(355) demonstrated that dissolved organic matter (DOM) in the BS, but not in the ECS, highly contributed non-absorbing DOC to the total DOC concentration. The photodegradation of dominant terrestrially derived CDOM in the ECS contributed to the positive relationship between a*CDOM(355) and ICn/IC1. By contrast, the abundant autochthonous CDOM in the YS was negatively correlated with ICn/IC1 in autumn. Our established box models showed that water exchange is a potentially important source of the aromatic components in the BS, YS, and ECS. Hence, the seasonal variations in water exchange might contribute to the variability of CDOM chemical composition in the BS, YS, and ECS, and significantly influence the structure and function of their ecosystems.

Characterisation of DOC and its relation to the deep terrestrial biosphere

NASA Astrophysics Data System (ADS)

Vieth, Andrea; Vetter, Alexandra; Sachse, Anke; Horsfield, Brian

2010-05-01

The deep subsurface is populated by a large number of microorganisms playing a pivotal role in the carbon cycling. The question arises as to the origin of the potential carbon sources that support deep microbial communities and their possible interactions within the deep subsurface. As the carbon sources need to be dissolved in formation fluids to become available to microorganisms, the dissolved organic carbon (DOC) needs further characterisation as regards concentration, structural as well as molecular composition and origin. The Malm carbonates in the Molasse basin of southern Germany are of large economic potential as they are targets for both hydrocarbon and geothermal exploration (ANDREWS et al., 1987). Five locations that differ in their depth of the Malm aquifer between 220 m and 3445 m below surface have been selected for fluid sampling. The concentration and the isotopic composition of the DOC have been determined. To get a better insight into the structural composition of the DOC, we also applied size exclusion chromatography and quantified the amount of low molecular weight organic acids (LMWOA) by ion chromatography. With increasing depth of the aquifer the formation fluids show increasing salinity as chloride concentrations increase from 2 to 300 mg/l and also the composition of the DOC changes. Water samples from greater depth (>3000 m) showed that the DOC mainly consists of LMWOA (max. 83 %) and low percentages of neutral compounds (alcohols, aldehyde, ketones, amino acids) as well as "building blocks". Building blocks have been described to be the oxidation intermediates from humic substances to LMWOA. With decreasing depth of the aquifer, the DOC of the fluid becomes increasingly dominated by neutral compounds and the percentage of building blocks increases to around 27%. The fluid sample from 220 m depth still contains a small amount of humic substances. The DOC of formation fluids in some terrestrial sediments may originate from organic-rich layers like coals and source rocks which may provide carbon sources for the deep biosphere by leaching water soluble organic compounds. We investigated the potential of a series of Eocene-Pleistocene coals, mudstones and sandstones from New Zealand with different maturities (Ro between 0.29 and 0.39) and total organic carbon content (TOC) regarding their potential to release such compounds. The water extraction of these New Zealand coals using Soxhlet apparatus resulted in yields of LMWOA that may feed the local deep terrestrial biosphere over geological periods of time (VIETH et al., 2008). However, the DOC of the water extracts mainly consisted of humic substances. To investigate the effect of thermal maturity of the organic matter as well as the effect of the organic matter type on the extraction yields, we examined additional coal samples (Ro between 0.29 and 0.80) and source rock samples from low to medium maturity (Ro between 0.3 to 1.1). Within our presentation we would like to show the compositional diversity and variability of dissolved organic compounds in natural formation fluids as well as in water extracts from a series of very different lithologies and discuss their effects on the carbon cycling in the deep terrestrial subsurface. References: Andrews, J. N., Youngman, M. J., Goldbrunner, J. E., and Darling, W. G., 1987. The geochemistry of formation waters in the Molasse Basin of Upper Austria. Environmental Geology 10, 43-57. Vieth, A., Mangelsdorf, K., Sykes, R., and Horsfield, B., 2008. Water extraction of coals - potential to estimate low molecular weight organic acids as carbon feedstock for the deep terrestrial biosphere? Organic Geochemistry 39, 985-991.

Molecular signatures of biogeochemical transformations in dissolved organic matter from ten World Rivers

NASA Astrophysics Data System (ADS)

Riedel, Thomas; Zark, Maren; Vähätalo, Anssi; Niggemann, Jutta; Spencer, Robert; Hernes, Peter; Dittmar, Thorsten

2016-09-01

Rivers carry large amounts of dissolved organic matter (DOM) to the oceans thereby connecting terrestrial and marine element cycles. Photo-degradation in conjunction with microbial turnover is considered a major pathway by which terrigenous DOM is decomposed. To reveal globally relevant patterns behind this process, we performed photo-degradation experiments and year-long bio-assays on DOM from ten of the largest world rivers that collectively account for more than one-third of the fresh water discharge to the global ocean. We furthermore tested the hypothesis that the terrigenous component in deep ocean DOM may be far higher than biomarker studies suggest, because of the selective photochemical destruction of characteristic biomolecules from vascular plants. DOM was molecularly characterized by a combination of non-targeted ultrahigh-resolution mass spectrometry and quantitative molecular tracer analyses. We show that the reactivity of DOM is globally related to broad catchment properties. Basins that are dominated by forest and grassland export more photo-degradable DOM than other rivers. Chromophoric compounds are mainly vascular plant-derived polyphenols, and partially carry a pyrogenic signature from vegetation fires. These forest and grassland dominated rivers lost up to 50% of dissolved organic carbon (DOC) during irradiation, and up to 85% of DOC was lost in total if subsequently bio-incubated for one year. Basins covered by cropland, on the other hand, export DOM with a higher proportion of photo-resistant and bio-available DOM which is enriched in nitrogen. In these rivers, 30% or less of DOC was photodegraded. Consistent with previous studies, we found that riverine DOM resembled marine DOM in its broad molecular composition after extensive degradation, mainly due to almost complete removal of aromatics. More detailed molecular fingerprinting analysis (based on the relative abundance of >4000 DOM molecular formulae), however, revealed clear differences between degraded riverine and deep-sea DOM (molecular Bray-Curtis dissimilarity of 50%). None of our experimental treatments enhanced the molecular similarity between the rivers and the deep ocean. We conclude that terrigenous DOM retains a specific molecular signature during photo-degradation on much longer time scales than previously assumed and that substantial, thus far unknown, molecular transformations occur prior to downward convection into the deep oceanic basins.

Microbial activities and dissolved organic matter dynamics in oil-contaminated surface seawater from the Deepwater Horizon oil spill site.

PubMed

Ziervogel, Kai; McKay, Luke; Rhodes, Benjamin; Osburn, Christopher L; Dickson-Brown, Jennifer; Arnosti, Carol; Teske, Andreas

2012-01-01

The Deepwater Horizon oil spill triggered a complex cascade of microbial responses that reshaped the dynamics of heterotrophic carbon degradation and the turnover of dissolved organic carbon (DOC) in oil contaminated waters. Our results from 21-day laboratory incubations in rotating glass bottles (roller bottles) demonstrate that microbial dynamics and carbon flux in oil-contaminated surface water sampled near the spill site two weeks after the onset of the blowout were greatly affected by activities of microbes associated with macroscopic oil aggregates. Roller bottles with oil-amended water showed rapid formation of oil aggregates that were similar in size and appearance compared to oil aggregates observed in surface waters near the spill site. Oil aggregates that formed in roller bottles were densely colonized by heterotrophic bacteria, exhibiting high rates of enzymatic activity (lipase hydrolysis) indicative of oil degradation. Ambient waters surrounding aggregates also showed enhanced microbial activities not directly associated with primary oil-degradation (β-glucosidase; peptidase), as well as a twofold increase in DOC. Concurrent changes in fluorescence properties of colored dissolved organic matter (CDOM) suggest an increase in oil-derived, aromatic hydrocarbons in the DOC pool. Thus our data indicate that oil aggregates mediate, by two distinct mechanisms, the transfer of hydrocarbons to the deep sea: a microbially-derived flux of oil-derived DOC from sinking oil aggregates into the ambient water column, and rapid sedimentation of the oil aggregates themselves, serving as vehicles for oily particulate matter as well as oil aggregate-associated microbial communities.

Microbial Activities and Dissolved Organic Matter Dynamics in Oil-Contaminated Surface Seawater from the Deepwater Horizon Oil Spill Site

PubMed Central

Ziervogel, Kai; McKay, Luke; Rhodes, Benjamin; Osburn, Christopher L.; Dickson-Brown, Jennifer; Arnosti, Carol; Teske, Andreas

2012-01-01

The Deepwater Horizon oil spill triggered a complex cascade of microbial responses that reshaped the dynamics of heterotrophic carbon degradation and the turnover of dissolved organic carbon (DOC) in oil contaminated waters. Our results from 21-day laboratory incubations in rotating glass bottles (roller bottles) demonstrate that microbial dynamics and carbon flux in oil-contaminated surface water sampled near the spill site two weeks after the onset of the blowout were greatly affected by activities of microbes associated with macroscopic oil aggregates. Roller bottles with oil-amended water showed rapid formation of oil aggregates that were similar in size and appearance compared to oil aggregates observed in surface waters near the spill site. Oil aggregates that formed in roller bottles were densely colonized by heterotrophic bacteria, exhibiting high rates of enzymatic activity (lipase hydrolysis) indicative of oil degradation. Ambient waters surrounding aggregates also showed enhanced microbial activities not directly associated with primary oil-degradation (β-glucosidase; peptidase), as well as a twofold increase in DOC. Concurrent changes in fluorescence properties of colored dissolved organic matter (CDOM) suggest an increase in oil-derived, aromatic hydrocarbons in the DOC pool. Thus our data indicate that oil aggregates mediate, by two distinct mechanisms, the transfer of hydrocarbons to the deep sea: a microbially-derived flux of oil-derived DOC from sinking oil aggregates into the ambient water column, and rapid sedimentation of the oil aggregates themselves, serving as vehicles for oily particulate matter as well as oil aggregate-associated microbial communities. PMID:22509359

Towards an assessment of riverine dissolved organic carbon in surface waters of the western Arctic Ocean based on remote sensing and biogeochemical modeling

NASA Astrophysics Data System (ADS)

Le Fouest, Vincent; Matsuoka, Atsushi; Manizza, Manfredi; Shernetsky, Mona; Tremblay, Bruno; Babin, Marcel

2018-03-01

Future climate warming of the Arctic could potentially enhance the load of terrigenous dissolved organic carbon (tDOC) of Arctic rivers due to increased carbon mobilization within watersheds. A greater flux of tDOC might impact the biogeochemical processes of the coastal Arctic Ocean (AO) and ultimately its capacity to absorb atmospheric CO2. In this study, we show that sea-surface tDOC concentrations simulated by a physical-biogeochemical coupled model in the Canadian Beaufort Sea for 2003-2011 compare favorably with estimates retrieved by satellite imagery. Our results suggest that, over spring-summer, tDOC of riverine origin contributes to 35 % of primary production and that an equivalent of ˜ 10 % of tDOC is exported westwards with the potential of fueling the biological production of the eastern Alaskan nearshore waters. The combination of model and satellite data provides promising results to extend this work to the entire AO so as to quantify, in conjunction with in situ data, the expected changes in tDOC fluxes and their potential impact on the AO biogeochemistry at basin scale.

Dynamics of dissolved organic matter in fjord ecosystems: Contributions of terrestrial dissolved organic matter in the deep layer

NASA Astrophysics Data System (ADS)

Yamashita, Youhei; McCallister, S. Leigh; Koch, Boris P.; Gonsior, Michael; Jaffé, Rudolf

2015-06-01

Annually, rivers and inland water systems deliver a significant amount of terrestrial organic matter (OM) to the adjacent coastal ocean in both particulate and dissolved forms; however, the metabolic and biogeochemical transformations of OM during its seaward transport remains one of the least understood components of the global carbon cycle. This transfer of terrestrial carbon to marine ecosystems is crucial in maintaining trophic dynamics in coastal areas and critical in global carbon cycling. Although coastal regions have been proposed as important sinks for exported terrestrial materials, most of the global carbon cycling data, have not included fjords in their budgets. Here we present distributional patterns on the quantity and quality of dissolved OM in Fiordland National Park, New Zealand. Specifically, we describe carbon dynamics under diverse environmental settings based on dissolved organic carbon (DOC) depth profiles, oxygen concentrations, optical properties (fluorescence) and stable carbon isotopes. We illustrate a distinct change in the character of DOC in deep waters compared to surface and mid-depth waters. Our results suggest that, both, microbial reworking of terrestrially derived plant detritus and subsequent desorption of DOC from its particulate counterpart (as verified in a desorption experiment) are the main sources of the humic-like enriched DOC in the deep basins of the studied fjords. While it has been suggested that short transit times and protection of OM by mineral sorption may ultimately result in significant terrestrial carbon burial and preservation in fjords, our data suggests the existence of an additional source of terrestrial OM in the form of DOC generated in deep, fjord water.

The role of dissolved organic carbon concentration and composition on nickel toxicity to early life-stages of the blue mussel Mytilus edulis and purple sea urchin Strongylocentrotus purpuratus.

PubMed

Blewett, Tamzin A; Dow, Elissa M; Wood, Chris M; McGeer, James C; Smith, D Scott

2018-05-24

Nickel (Ni) emissions resulting from production and transportation raise concerns about the impact of Ni exposure to marine ecosystems. Ni bioavailability models are established for FW systems, but the influence of chemical parameters (e.g. dissolved organic carbon (DOC)) on Ni toxicity within marine systems is less well understood. To examine the effects of DOC concentration and composition on Ni toxicity, acute toxicity tests were conducted on early life-stages of blue mussels (Mytilus edulis) and sea urchin embryos (Strongylocentrotus purpuratus) in full strength sea water (32 ppt). Nine different field collected samples of water with varying concentration (up to 4.5 mg C/L) and composition of DOC were collected from the east coast of the United States. Organic matter compositional analysis included molecular fluorescence and absorbance spectroscopy. The different DOC sources had different protective effects against embryo toxicity. The control (no DOC) Ni 48 h-EC 50 for Mytilus embryos was 133 µg/L (95% confidence interval (C.I.) of 123-144 µg/L), while Strongylocentrotus embryos displayed control 96-h EC 50 values of 207 µg/L (167-247 µg/L). The most significantly protective sample had high humic acid concentrations (as determined from fluorescence spectroscopy), which yielded an EC 50 of 195 µg/L (169-222 µg/L) for Mytilus, and an EC 50 of 394 µg/L (369-419 µg/L) for S. purpuratus. Among all samples, protection was related to both DOC quantity and quality, with fluorescence-resolved humic and fulvic acid concentrations showing the strongest correlations with protection for both species. These data suggest that DOC is protective against Ni toxicity in M. edulis and S. purpuratus, and that accounting for a DOC quality factor will improve predictive toxicity models such as the biotic ligand model. Copyright © 2018 Elsevier Inc. All rights reserved.

Estimating absorption coefficients of colored dissolved organic matter (CDOM) using a semi-analytical algorithm for Southern Beaufort Sea (Canadian Arctic) waters: application to deriving concentrations of dissolved organic carbon from space

NASA Astrophysics Data System (ADS)

Matsuoka, A.; Hooker, S. B.; Bricaud, A.; Gentili, B.; Babin, M.

2012-10-01

A series of papers have suggested that freshwater discharge, including a large amount of dissolved organic matter (DOM), has increased since the middle of the 20th century. In this study, a semi-analytical algorithm for estimating light absorption coefficients of the colored fraction of DOM (CDOM) was developed for Southern Beaufort Sea waters using remote sensing reflectance at six wavelengths in the visible spectral domain corresponding to MODIS ocean color sensor. This algorithm allows to separate colored detrital matter (CDM) into CDOM and non-algal particles (NAP) by determining NAP absorption using an empirical relationship between NAP absorption and particle backscattering coefficients. Evaluation using independent datasets, that were not used for developing the algorithm, showed that CDOM absorption can be estimated accurately to within an uncertainty of 35% and 50% for oceanic and turbid waters, respectively. In situ measurements showed that dissolved organic carbon (DOC) concentrations were tightly correlated with CDOM absorption (r2 = 0.97). By combining the CDOM absorption algorithm together with the DOC versus CDOM relationship, it is now possible to estimate DOC concentrations in the near-surface layer of the Southern Beaufort Sea using satellite ocean color data. DOC concentrations in the surface waters were estimated using MODIS ocean color data, and the estimates showed reasonable values compared to in situ measurements. We propose a routine and near real-time method for deriving DOC concentrations from space, which may open the way to an estimate of DOC budgets for Arctic coastal waters.

A Deep and Autoregressive Approach for Topic Modeling of Multimodal Data.

PubMed

Zheng, Yin; Zhang, Yu-Jin; Larochelle, Hugo

2016-06-01

Topic modeling based on latent Dirichlet allocation (LDA) has been a framework of choice to deal with multimodal data, such as in image annotation tasks. Another popular approach to model the multimodal data is through deep neural networks, such as the deep Boltzmann machine (DBM). Recently, a new type of topic model called the Document Neural Autoregressive Distribution Estimator (DocNADE) was proposed and demonstrated state-of-the-art performance for text document modeling. In this work, we show how to successfully apply and extend this model to multimodal data, such as simultaneous image classification and annotation. First, we propose SupDocNADE, a supervised extension of DocNADE, that increases the discriminative power of the learned hidden topic features and show how to employ it to learn a joint representation from image visual words, annotation words and class label information. We test our model on the LabelMe and UIUC-Sports data sets and show that it compares favorably to other topic models. Second, we propose a deep extension of our model and provide an efficient way of training the deep model. Experimental results show that our deep model outperforms its shallow version and reaches state-of-the-art performance on the Multimedia Information Retrieval (MIR) Flickr data set.

Acid-base properties of Baltic Sea dissolved organic matter

NASA Astrophysics Data System (ADS)

Hammer, Karoline; Schneider, Bernd; Kuliński, Karol; Schulz-Bull, Detlef E.

2017-09-01

Calculations related to the marine CO2 system that are based on alkalinity data may be strongly biased if the contributions of organic compounds are ignored. In coastal seas, concentrations of dissolved organic matter (DOM) are frequently high and alkalinity from inorganic compounds is low. In this study, based on measurements of total alkalinity, total CO2, and pH, we determined the organic alkalinity, Aorg, in water from the central Baltic Sea. The maximum Aorg measured in the surface mixed layer during the spring bloom was > 50 μmol/kg-SW but the Aorg decreased with depth and approached zero below the permanent halocline. This behavior could be attributed to the decreased pH of deeper water layers. The data were used to calculate the bulk dissociation constant, KDOM, for marine DOM and the fraction f of dissolved organic carbon (DOC) that acts as a carrier for acid-base functional groups. The p KDOM (7.27) agreed well with the value (7.34) previously estimated in a preliminary study of organic alkalinity in the Baltic Sea. The fraction of carbon atoms carrying acid-base groups was 17% and was somewhat higher than previously reported (12%). Spike experiments performed using artificial seawater and three different humic/fulvic substances tested whether the acid-base properties of these substances explain the results of our field study. Specifically, Aorg was determined at different concentrations (DOC) of the added humic/fulvic substances. The relationship between Aorg and the DOC concentrations indicated that humic/fulvic substances are more acidic (p KDOM < 6.5) than the bulk DOC natural occurring in the Baltic Sea.

Stable and radiocarbon isotopic composition of dissolved organic matter in the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Walker, B. D.; Druffel, E. R. M.; Kolasinski, J.; Roberts, B. J.; Xu, X.; Rosenheim, B. E.

2017-08-01

Dissolved organic carbon (DOC) is of primary importance to marine ecosystems and the global carbon cycle. Stable carbon (δ13C) and radiocarbon (Δ14C) isotopic measurements are powerful tools for evaluating DOC sources and cycling. However, the isotopic signature of DOC in the Gulf of Mexico (GOM) remains almost completely unknown. Here we present the first DOC Δ14C and δ13C depth profiles from the GOM. Our results suggest the Mississippi River exports large amounts of DOC with an anthropogenic "bomb" Δ14C signature. Riverine DOC is removed and recycled offshore, and some marine production of DOC is observed in the river plume. Offshore profiles show that DOC has higher Δ14C than its Caribbean feed waters, indicative of a modern deep DOC source in the GOM basin. Finally, high DOC with negative δ13C and Δ14C values were observed near the Macondo Wellhead, suggesting a transformation of Deepwater Horizon hydrocarbons into a persistent population of DOC.

Estimating absorption coefficients of colored dissolved organic matter (CDOM) using a semi-analytical algorithm for southern Beaufort Sea waters: application to deriving concentrations of dissolved organic carbon from space

NASA Astrophysics Data System (ADS)

Matsuoka, A.; Hooker, S. B.; Bricaud, A.; Gentili, B.; Babin, M.

2013-02-01

A series of papers have suggested that freshwater discharge, including a large amount of dissolved organic matter (DOM), has increased since the middle of the 20th century. In this study, a semi-analytical algorithm for estimating light absorption coefficients of the colored fraction of DOM (CDOM) was developed for southern Beaufort Sea waters using remote sensing reflectance at six wavelengths in the visible spectral domain corresponding to MODIS ocean color sensor. This algorithm allows the separation of colored detrital matter (CDM) into CDOM and non-algal particles (NAP) through the determination of NAP absorption using an empirical relationship between NAP absorption and particle backscattering coefficients. Evaluation using independent datasets, which were not used for developing the algorithm, showed that CDOM absorption can be estimated accurately to within an uncertainty of 35% and 50% for oceanic and coastal waters, respectively. A previous paper (Matsuoka et al., 2012) showed that dissolved organic carbon (DOC) concentrations were tightly correlated with CDOM absorption in our study area (r2 = 0.97). By combining the CDOM absorption algorithm together with the DOC versus CDOM relationship, it is now possible to estimate DOC concentrations in the near-surface layer of the southern Beaufort Sea using satellite ocean color data. DOC concentrations in the surface waters were estimated using MODIS ocean color data, and the estimates showed reasonable values compared to in situ measurements. We propose a routine and near real-time method for deriving DOC concentrations from space, which may open the way to an estimate of DOC budgets for Arctic coastal waters.

UV/PAR radiation and DOM properties in surface coastal waters of the Canadian shelf of the Beaufort Sea during summer 2009

NASA Astrophysics Data System (ADS)

Para, J.; Charrière, B.; Matsuoka, A.; Miller, W. L.; Rontani, J. F.; Sempéré, R.

2013-04-01

Surface waters from the Beaufort Sea in the Arctic Ocean were evaluated for dissolved organic carbon (DOC), and optical characteristics including UV (ultraviolet) radiation and PAR (photosynthetically active radiation) diffuse attenuation (Kd), and chromophoric and fluorescent dissolved organic matter (CDOM and FDOM) as part of the MALINA field campaign (30 July to 27 August). Spectral absorption coefficients (aCDOM (350 nm) (m-1)) were significantly correlated to both diffuse attenuation coefficients (Kd) in the UV-A and UV-B and to DOC concentrations. This indicates CDOM as the dominant attenuator of both UV and PAR solar radiation and suggests its use as an optical proxy for DOC concentrations in this region. While the Mackenzie input is the main driver of CDOM dynamics in low salinity waters, locally, primary production can create significant increases in CDOM. Extrapolating CDOM to DOC relationships, we estimate that ∼16% of the DOC in the Mackenzie River does not absorb radiation at 350 nm. The discharges of DOC and its chromophoric subset (CDOM) by the Mackenzie River during the MALINA cruise are estimated as ∼0.22 TgC and 0.18 TgC, respectively. Three dissolved fluorescent components (C1-C3) were identified by fluorescence excitation/emission matrix spectroscopy (EEMS) and parallel factor (PARAFAC) analysis. Our results showed an aquatic dissolved organic matter (DOM) component (C1), probably produced in the numerous lakes of the watershed, that co-dominated with a terrestrial humic-like component (C2) in the Mackenzie Delta Sector. This aquatic DOM could partially explain the high CDOM spectral slopes observed in the Beaufort Sea.

ISACS-DOC: Monitoring and Diagnostic System for AKARI and HINODE

NASA Astrophysics Data System (ADS)

Mizutani, Mitsue; Hirose, Toshinori; Takaki, Ryoji; Honda, Hideyuki

ISACS-DOC (Intelligent Satellite Control Software-DOCtor), which is an automatic monitoring and diagnostic system for scientific satellites or spacecraft, aims to rapidly and accurately capture important changes and sign of anomaly during daily satellite operations. After three systems for deep space missions, the new generation of ISACS-DOC with a higher speed processing performance had been developed for the satellites in earth orbit, AKARI and HINODE. This paper reports on the newest ISACS-DOC about enhanced functions, operating status, and an approach to create standards to build and keep up the knowledge data base. Continuous enhancements through the actual operations are the advantage of ISACS-DOC.

Biophysical processes affecting DOM dynamics at the Arno river mouth (Tyrrhenian Sea).

PubMed

Retelletti Brogi, S; Gonnelli, M; Vestri, S; Santinelli, C

2015-02-01

Dissolved organic carbon (DOC) and optical properties (absorption and fluorescence) of chromophoric dissolved organic matter (CDOM) were measured in October 2012, at the Arno river mouth and in a coastal station close to it. The data reported indicates that the Arno river represents an important source of DOC and CDOM to this coastal area, with a total DOC flux of 11.23-12.04 · 10(9)g C · y(-1). Moving from the river to the sea, CDOM absorption and fluorescence decreased, while the spectral slope increased, suggesting a change in the molecular properties of CDOM. Mineralization experiments were carried out in order to investigate the main processes of DOM removal and/or transformation in riverine and coastal water. DOC removal rates were 20 μM · month(-1) in the river and 3 μM · month(-1) in the seawater, while CDOM was released during the first 30 days and removed in the following 40 days. Copyright © 2014 Elsevier B.V. All rights reserved.

Distributions and characteristics of dissolved organic matter in temperate coastal waters (Southern North Sea)

NASA Astrophysics Data System (ADS)

Lübben, Andrea; Dellwig, Olaf; Koch, Sandra; Beck, Melanie; Badewien, Thomas H.; Fischer, Sibylle; Reuter, Rainer

2009-04-01

The spatial and temporal distributions of chromophoric dissolved organic matter (CDOM) and dissolved organic carbon (DOC) was studied in the East-Frisian Wadden Sea (Southern North Sea) during several cruises between 2002 and 2005. The spatial distribution of CDOM in the German Bight shows a strong gradient towards the coast. Tidal and seasonal variations of dissolved organic matter (DOM) identify freshwater discharge via flood-gates at the coastline and pore water efflux from tidal flat sediments as the most important CDOM sources within the backbarrier area of the Island of Spiekeroog. However, the amount and pattern of CDOM and DOC is strongly affected by various parameters, e.g. changes in the amount of terrestrial run-off, precipitation, evaporation, biological activity and photooxidation. A decoupling of CDOM and DOC, especially during periods of pronounced biological activity (algae blooms and microbial activity), is observed in spring and especially in summer. Mixing of the endmembers freshwater, pore water, and open sea water results in the formation of a coastal transition zone. Whilst an almost conservative behaviour during mixing is observed in winter, summer data point towards non-conservative mixing.

Near-surface Heating of Young Rift Sediment Causes Mass Production and Discharge of Reactive Dissolved Organic Matter

PubMed Central

Lin, Yu-Shih; Koch, Boris P.; Feseker, Tomas; Ziervogel, Kai; Goldhammer, Tobias; Schmidt, Frauke; Witt, Matthias; Kellermann, Matthias Y.; Zabel, Matthias; Teske, Andreas; Hinrichs, Kai-Uwe

2017-01-01

Ocean margin sediments have been considered as important sources of dissolved organic carbon (DOC) to the deep ocean, yet the contribution from advective settings has just started to be acknowledged. Here we present evidence showing that near-surface heating of sediment in the Guaymas Basin, a young extensional depression, causes mass production and discharge of reactive dissolved organic matter (DOM). In the sediment heated up to ~100 °C, we found unexpectedly low DOC concentrations in the pore waters, reflecting the combined effect of thermal desorption and advective fluid flow. Heating experiments suggested DOC production to be a rapid, abiotic process with the DOC concentration increasing exponentially with temperature. The high proportions of total hydrolyzable amino acids and presence of chemical species affiliated with activated hydrocarbons, carbohydrates and peptides indicate high reactivity of the DOM. Model simulation suggests that at the local scale, near-surface heating of sediment creates short and massive DOC discharge events that elevate the bottom-water DOC concentration. Because of the heterogeneous distribution of high heat flow areas, the expulsion of reactive DOM is spotty at any given time. We conclude that hydrothermal heating of young rift sediments alter deep-ocean budgets of bioavailable DOM, creating organic-rich habitats for benthic life. PMID:28327661

The Spatial and Temporal Distribution of Dissolved Organic Carbon Exported from Three Chinese Rivers to the China Sea

PubMed Central

Shi, Guohua; Peng, Changhui; Wang, Meng; Shi, Shengwei; Yang, Yanzheng; Chu, Junyao; Zhang, Junjun; Lin, Guanghui; Shen, Yan; Zhu, Qiuan

2016-01-01

The lateral transport of dissolved organic carbon (DOC) plays an important role in linking the carbon cycles of terrestrial and aquatic ecosystems. Neglecting the lateral flow of dissolved organic carbon can lead to an underestimation of the organic carbon budget of terrestrial ecosystems. It is thus necessary to integrate DOC concentrations and flux into carbon cycle models, particularly with regard to the development of models that are intended to directly link terrestrial and ocean carbon cycles. However, to achieve this goal, more accurate information is needed to better understand and predict DOC dynamics. In this study, we compiled an inclusive database of available data collected from the Yangtze River, Yellow River and Pearl River in China. The database is collected based on online literature survey and analysed by statistic method. Overall, our results revealed a positive correlation between DOC flux and discharge in all three rivers, whereas the DOC concentration was more strongly correlated with the regional net primary productivity (NPP). We estimated the total DOC flux exported by the three rivers into the China Sea to be approximately 2.73 Tg yr-1. Specifically, the annual flux of DOC from the Yangtze River, Yellow River and Pearl River was estimated to be 1.85 Tg yr-1, 0.06 Tg yr-1 and 0.82 Tg yr-1, respectively, and the average annual DOC concentrations were estimated to be 2.24 ± 0.53 mg L-1, 2.70 ± 0.38 mg L-1 and 1.51 ± 0.09 mg L-1, respectively. Seasonal variations in DOC concentrations are greatly influenced by the interaction between temperature and precipitation. NPP is significantly and positively related to the DOC concentration in the Yangtze River and the Pearl River. In addition, differences in climate and the productivity of the vegetation may influence both the flux and concentrations of DOC transported by the rivers and thus potentially affect estuarine geochemistry. PMID:27755581

Absorption and fluorescence properties of the eastern Bering Sea in the summer with special reference to the influence of a Cold Pool

NASA Astrophysics Data System (ADS)

D'Sa, E. J.; Goes, J. I.; Gomes, H.; Mouw, C.

2013-12-01

The absorption and fluorescence properties of chromophoric dissolved organic matter (CDOM) are reported for the inner shelf, slope waters and outer shelf regions of the eastern Bering Sea during the summer of 2008, when a warm, thermally stratified surface mixed layer lay over a Cold Pool (< 2 °C) that occupied the entire middle shelf. CDOM absorption at 355 nm (ag355) and its spectral slope (S) in conjunction with excitation emission matrix (EEM) fluorescence and parallel factor analysis (PARAFAC) revealed large variability in the characteristics of CDOM in different regions of the Bering Sea. PARAFAC analysis aided in the identification of three humic-like (components 1, 2 and 5) and two protein-like (a tyrosine-like component 3, and a tryptophan-like component 4) components. In the extensive shelf region, average absorption coefficients at 355 nm (ag355 m-1) and DOC concentrations (μM) were highest in the inner shelf (0.342 ± 0.11 m-1, 92.67 ± 14.60 μM) and lower in the middle (0.226 ± 0.05 m-1, 78.38 ± 10.64 μM) and outer (0.176 ± 0.05 m-1, 80.73 ± 18.11 μM) shelves, respectively. Mean spectral slopes S were elevated in the middle shelf (24.38 ± 2.25 μm-1) especially in the surface waters (26.87 ± 2.39 μm-1) indicating high rates of photodegradation in the highly stratified surface mixed layer, which intensified northwards in the northern middle shelf likely contributing to greater light penetration and to phytoplankton blooms at deeper depths. The fluorescent humic-like components 1, 2, and 5 were most elevated in the inner shelf most likely from riverine inputs. Measurements at depth in slope waters (> 250 m) revealed low values of ag355 (0.155 ± 0.03 m-1) and S (15.45 ± 1.78 μm-1) indicative of microbial degradation of CDOM in deep waters. DOC concentrations, however were not significantly different suggesting CDOM sources and sinks to be uncoupled from DOC. Along the productive "green belt" in the outer shelf/slope region, absorption and fluorescence properties indicated the presence of fresh and degraded autochthonous DOM. Near the Unimak Pass region of the Aleutian Islands, low DOC and ag355 (mean 66.99 ± 7.94 μM; 0.182 ± 0.05 m-1) and a high S (mean 25.95 ± 1.58 μm-1) suggested substantial photobleaching of the Alaska Coastal Waters, but high intensities of humic-like and protein-like fluorescence suggested sources of fluorescent DOM from coastal runoff and glacier melt waters during the summer. Although our data show that the CDOM photochemical environment of the Bering Sea is complex, our current information on its optical properties will aid in better understanding of the biogeochemical role of CDOM in carbon budgets in relation to the annual sea ice and phytoplankton dynamics, and to improved algorithms of ocean color remote sensing for this region.

Absorption and fluorescence properties of chromophoric dissolved organic matter of the eastern Bering Sea in the summer with special reference to the influence of a cold pool

NASA Astrophysics Data System (ADS)

D'Sa, E. J.; Goes, J. I.; Gomes, H.; Mouw, C.

2014-06-01

The absorption and fluorescence properties of chromophoric dissolved organic matter (CDOM) are reported for the inner shelf, slope waters and outer shelf regions of the eastern Bering Sea during the summer of 2008, when a warm, thermally stratified surface mixed layer lay over a cold pool (< 2 °C) that occupied the entire middle shelf. CDOM absorption at 355 nm (ag355) and its spectral slope (S) in conjunction with excitation-emission matrix (EEM) fluorescence and parallel factor analysis (PARAFAC) revealed large variability in the characteristics of CDOM in different regions of the Bering Sea. PARAFAC analysis aided in the identification of three humic-like (components one, two and five) and two protein-like (a tyrosine-like component three, and a tryptophan-like component four) components. In the extensive shelf region, average absorption coefficients at 355 nm (ag355, m-1) and DOC concentrations (μM) were highest in the inner shelf (0.342 ± 0.11 m-1, 92.67 ± 14.60 μM) and lower in the middle (0.226 ± 0.05 m-1, 78.38 ± 10.64 μM) and outer (0.185 ± 0.05 m-1, 79.24 ± 18.01 μM) shelves, respectively. DOC concentrations, however were not significantly different, suggesting CDOM sources and sinks to be uncoupled from DOC. Mean spectral slopes S were elevated in the middle shelf (24.38 ± 2.25 μm-1) especially in the surface waters (26.87 ± 2.39 μm-1) indicating high rates of photodegradation in the highly stratified surface mixed layer, which intensified northwards in the northern middle shelf likely contributing to greater light penetration and to phytoplankton blooms at deeper depths. The fluorescent humic-like components one, two, and five were most elevated in the inner shelf most likely from riverine inputs. Along the productive "green belt" in the outer shelf/slope region, absorption and fluorescence properties indicated the presence of fresh and degraded autochthonous DOM. Near the Unimak Pass region of the Aleutian Islands, low DOC and ag355 (mean 66.99 ± 7.94 μM; 0.182 ± 0.05 m-1) and a high S (mean 25.95 ± 1.58 μm-1) suggested substantial photobleaching of the Alaska Coastal Water, but high intensities of humic-like and protein-like fluorescence suggested sources of fluorescent DOM from coastal runoff and glacier meltwaters during the summer. The spectral slope S vs. ag355 relationship revealed terrestrial and oceanic end members along with intermediate water masses that were modeled using nonlinear regression equations that could allow water mass differentiation based on CDOM optical properties. Spectral slope S was negatively correlated (r2 = 0.79) with apparent oxygen utilization (AOU) for waters extending from the middle shelf into the deep Bering Sea indicating increasing microbial alteration of CDOM with depth. Although our data show that the CDOM photochemical environment of the Bering Sea is complex, our current information on its optical properties will aid in better understanding of the biogeochemical role of CDOM in carbon budgets in relation to the annual sea ice and phytoplankton dynamics, and to improved algorithms of ocean color remote sensing for this region.

Spatial distribution and mobility of organic carbon (POC and DOC) in a coastal Mediterranean environment (Saronikos Gulf, Greece) during 2007-2009 period.

PubMed

Evangeliou, Nikolaos; Florou, Heleny

2013-08-01

Particulate (POC) and dissolved organic carbon (DOC) is an important parameter for the pollution assessment of coastal marine systems, especially those affected by anthropogenic, domestic, and industrial activities. In the present paper, a similar marine system (Saronikos Gulf) located in the west-central Aegean Sea (eastern Mediterranean Sea) was examined, in terms of the temporal and spatial distribution of organic carbon (POC and DOC), with respect to marine sources and pathways. POC was maximum in winter in the Saronikos Gulf, due to the bloom of phytoplankton, whereas in the Elefsis Bay (located in the north side of the Saronikos Gulf) in summer, since phytoplankton grazes in the Bay in the end of summer (except for winter). Approximately 60 % of the bulk DOC of the water column was estimated as non-refractory (labile and semi-labile), due to the major anthropogenic, domestic, and industrial effects of the region and the shallow depths. The spatial distribution of POC and DOC mainly affects the northeastern section of the Gulf, since that region has been accepted major organic discharges for a long time period, in connection to the relatively long renewal times of its waters.

A Model of Low Grazing Angle Sea Clutter for Coherent Radar Performance Analysis

DTIC Science & Technology

2013-06-01

Navy Communications & Information Warfare Doc. Data Sheet Director General Navy Certification and Safety Doc. Data Sheet Director General Submarine...Abstracts, US 1 Documents Librarian , The Center for Research Libraries, US 1 International Technology and Science Center (ITSC) Library 1 Spare Copies 4

A Physically Based Framework for Modelling the Organic Fractionation of Sea Spray Aerosol from Bubble Film Langmuir Equilibria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burrows, Susannah M.; Ogunro, O.; Frossard, Amanda

2014-12-19

The presence of a large fraction of organic matter in primary sea spray aerosol (SSA) can strongly affect its cloud condensation nuclei activity and interactions with marine clouds. Global climate models require new parameterizations of the SSA composition in order to improve the representation of these processes. Existing proposals for such a parameterization use remotely-sensed chlorophyll-a concentrations as a proxy for the biogenic contribution to the aerosol. However, both observations and theoretical considerations suggest that existing relationships with chlorophyll-a, derived from observations at only a few locations, may not be representative for all ocean regions. We introduce a novel frameworkmore » for parameterizing the fractionation of marine organic matter into SSA based on a competitive Langmuir adsorption equilibrium at bubble surfaces. Marine organic matter is partitioned into classes with differing molecular weights, surface excesses, and Langmuir adsorption parameters. The classes include a lipid-like mixture associated with labile dissolved organic carbon (DOC), a polysaccharide-like mixture associated primarily with semi-labile DOC, a protein-like mixture with concentrations intermediate between lipids and polysaccharides, a processed mixture associated with recalcitrant surface DOC, and a deep abyssal humic-like mixture. Box model calculations have been performed for several cases of organic adsorption to illustrate the underlying concepts. We then apply the framework to output from a global marine biogeochemistry model, by partitioning total dissolved organic carbon into several classes of macromolecule. Each class is represented by model compounds with physical and chemical properties based on existing laboratory data. This allows us to globally map the predicted organic mass fraction of the nascent submicron sea spray aerosol. Predicted relationships between chlorophyll-\\textit{a} and organic fraction are similar to existing empirical parameterizations, but can vary between biologically productive and non-productive regions, and seasonally within a given region. Major uncertainties include the bubble film thickness at bursting and the variability of organic surfactant activity in the ocean, which is poorly constrained. In addition, marine colloids and cooperative adsorption of polysaccharides may make important contributions to the aerosol, but are not included here. This organic fractionation framework is an initial step towards a closer linking of ocean biogeochemistry and aerosol chemical composition in Earth system models. Future work should focus on improving constraints on model parameters through new laboratory experiments or through empirical fitting to observed relationships in the real ocean and atmosphere, as well as on atmospheric implications of the variable composition of organic matter in sea spray.« less

Dissolved Organic Carbon in the North Atlantic Meridional Overturning Circulation.

PubMed

Fontela, Marcos; García-Ibáñez, Maribel I; Hansell, Dennis A; Mercier, Herlé; Pérez, Fiz F

2016-05-31

The quantitative role of the Atlantic Meridional Overturning Circulation (AMOC) in dissolved organic carbon (DOC) export is evaluated by combining DOC measurements with observed water mass transports. In the eastern subpolar North Atlantic, both upper and lower limbs of the AMOC transport high-DOC waters. Deep water formation that connects the two limbs of the AMOC results in a high downward export of non-refractory DOC (197 Tg-C·yr(-1)). Subsequent remineralization in the lower limb of the AMOC, between subpolar and subtropical latitudes, consumes 72% of the DOC exported by the whole Atlantic Ocean. The contribution of DOC to the carbon sequestration in the North Atlantic Ocean (62 Tg-C·yr(-1)) is considerable and represents almost a third of the atmospheric CO2 uptake in the region.

Dissolved Organic Carbon in the North Atlantic Meridional Overturning Circulation

PubMed Central

Fontela, Marcos; García-Ibáñez, Maribel I.; Hansell, Dennis A.; Mercier, Herlé; Pérez, Fiz F.

2016-01-01

The quantitative role of the Atlantic Meridional Overturning Circulation (AMOC) in dissolved organic carbon (DOC) export is evaluated by combining DOC measurements with observed water mass transports. In the eastern subpolar North Atlantic, both upper and lower limbs of the AMOC transport high-DOC waters. Deep water formation that connects the two limbs of the AMOC results in a high downward export of non-refractory DOC (197 Tg-C·yr−1). Subsequent remineralization in the lower limb of the AMOC, between subpolar and subtropical latitudes, consumes 72% of the DOC exported by the whole Atlantic Ocean. The contribution of DOC to the carbon sequestration in the North Atlantic Ocean (62 Tg-C·yr−1) is considerable and represents almost a third of the atmospheric CO2 uptake in the region. PMID:27240625

Transport and Degradation of Dissolved Organic Matter and Associated Freshwater Pathways in the Laptev Sea (Siberian Arctic)

NASA Astrophysics Data System (ADS)

Hoelemann, J. A.; Janout, M. A.; Koch, B.; Bauch, D.; Novikhin, A.; Heim, B.; Eulenburg, A.; Kassens, H.; Timokhov, L.

2016-02-01

The Siberian shelves are seasonally ice-covered and characterized by large freshwater runoff rates from some of the largest rivers on earth. These rivers also provide a considerable amount of dissolved organic carbon (DOC) to the Arctic Ocean. With an annual load of about 6 Tg DOC a-1 the Lena River contributes nearly 20 percent of the annual DOC discharge to the Arctic Ocean. We present a comprehensive dataset collected during multiple Laptev Sea expeditions carried out in spring, summer and fall (2010-15) in order to explore the processes controlling the dispersal and degradation of DOM during the river water's passage across the shelf. Our investigations are focused on CDOM (Colored Dissolved Organic Matter), which resembles the DOC concentration, interacts with solar radiation and forms a major fraction of the organic matter pool. Our results show an inverse correlation between salinity and CDOM, which emphasizes its terrigenous source. Further, the spectral slope of CDOM absorption indicates that photochemical bleaching is the main process that reduces the CDOM absorption ( 20%) in freshwater along its transport across the shelf. The distribution of the Lena river water is primarily controlled by winds in summer. During summers with easterly or southerly winds, the plume remains on the central and northern Laptev shelf, and is available for export into the Arctic Basin. The CDOM-rich river water increases the absorption of solar radiation and enhances warming of a shallow surface layer. This emphasizes the importance of CDOM for sea surface temperatures and lateral ice melt on the shelf and adjacent basin. DOC concentrations in freshwater vary seasonally and become larger with increasing discharge. Our data indicate that the CDOM concentrations are highest during the freshet when landfast ice is still present. Subsequent mixing with local sea ice meltwater lowers CDOM to values that are characteristic for the Lena freshwater during the rest of the year.

Transport and degradation of dissolved organic matter and associated freshwater pathways in the Laptev Sea (Siberian Arctic)

NASA Astrophysics Data System (ADS)

Hoelemann, Jens; Janout, Markus; Koch, Boris; Bauch, Dorothea; Hellmann, Sebastian; Eulenburg, Antje; Heim, Birgit; Kassens, Heidemarie; Timokhov, leonid

2016-04-01

The Siberian shelves are seasonally ice-covered and characterized by large freshwater runoff rates from some of the largest rivers on earth. These rivers also provide a considerable amount of dissolved organic carbon (DOC) to the Arctic Ocean. With an annual load of about 6 Tg DOC a-1 the Lena River contributes nearly 20 percent of the annual DOC discharge to the Arctic Ocean. We present a comprehensive dataset collected during multiple Laptev Sea expeditions carried out in spring, summer and fall (2010-15) in order to explore the processes controlling the dispersal and degradation of DOM during the river water's passage across the shelf. Our investigations are focused on CDOM (Colored Dissolved Organic Matter), which resembles the DOC concentration, interacts with solar radiation and forms a major fraction of the organic matter pool. Our results show an inverse correlation between salinity and CDOM, which emphasizes its terrigenous source. Further, the spectral slope of CDOM absorption indicates that photochemical bleaching is the main process that reduces the CDOM absorption (~ 20%) in freshwater along its transport across the shelf. The distribution of the Lena river water is primarily controlled by winds in summer. During summers with easterly or southerly winds, the plume remains on the central and northern Laptev shelf, and is available for export into the Arctic Basin. The CDOM-rich river water increases the absorption of solar radiation and enhances warming of a shallow surface layer. This emphasizes the importance of CDOM for sea surface temperatures and lateral ice melt on the shelf and adjacent basin. DOC concentrations in freshwater vary seasonally and become larger with increasing discharge. Our data indicate that the CDOM concentrations are highest during the freshet when landfast ice is still present. Subsequent mixing with local sea ice meltwater lowers CDOM to values that are characteristic for the Lena freshwater during the rest of the year.

Transcriptomes and expression profiling of deep-sea corals from the Red Sea provide insight into the biology of azooxanthellate corals.

PubMed

Yum, Lauren K; Baumgarten, Sebastian; Röthig, Till; Roder, Cornelia; Roik, Anna; Michell, Craig; Voolstra, Christian R

2017-07-25

Despite the importance of deep-sea corals, our current understanding of their ecology and evolution is limited due to difficulties in sampling and studying deep-sea environments. Moreover, a recent re-evaluation of habitat limitations has been suggested after characterization of deep-sea corals in the Red Sea, where they live at temperatures of above 20 °C at low oxygen concentrations. To gain further insight into the biology of deep-sea corals, we produced reference transcriptomes and studied gene expression of three deep-sea coral species from the Red Sea, i.e. Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. Our analyses suggest that deep-sea coral employ mitochondrial hypometabolism and anaerobic glycolysis to manage low oxygen conditions present in the Red Sea. Notably, we found expression of genes related to surface cilia motion that presumably enhance small particle transport rates in the oligotrophic deep-sea environment. This is the first study to characterize transcriptomes and in situ gene expression for deep-sea corals. Our work offers several mechanisms by which deep-sea corals might cope with the distinct environmental conditions present in the Red Sea As such, our data provide direction for future research and further insight to organismal response of deep-sea coral to environmental change and ocean warming.

Dissolved organic carbon and nitrogen release from boreal Holocene permafrost and seasonally frozen soils of Alaska

NASA Astrophysics Data System (ADS)

Wickland, Kimberly P.; Waldrop, Mark P.; Aiken, George R.; Koch, Joshua C.; Torre Jorgenson, M.; Striegl, Robert G.

2018-06-01

Permafrost (perennially frozen) soils store vast amounts of organic carbon (C) and nitrogen (N) that are vulnerable to mobilization as dissolved organic carbon (DOC) and dissolved organic and inorganic nitrogen (DON, DIN) upon thaw. Such releases will affect the biogeochemistry of permafrost regions, yet little is known about the chemical composition and source variability of active-layer (seasonally frozen) and permafrost soil DOC, DON and DIN. We quantified DOC, total dissolved N (TDN), DON, and DIN leachate yields from deep active-layer and near-surface boreal Holocene permafrost soils in interior Alaska varying in soil C and N content and radiocarbon age to determine potential release upon thaw. Soil cores were collected at three sites distributed across the Alaska boreal region in late winter, cut in 15 cm thick sections, and deep active-layer and shallow permafrost sections were thawed and leached. Leachates were analyzed for DOC, TDN, nitrate (NO3 ‑), and ammonium (NH4 +) concentrations, dissolved organic matter optical properties, and DOC biodegradability. Soils were analyzed for C, N, and radiocarbon (14C) content. Soil DOC, TDN, DON, and DIN yields increased linearly with soil C and N content, and decreased with increasing radiocarbon age. These relationships were significantly different for active-layer and permafrost soils such that for a given soil C or N content, or radiocarbon age, permafrost soils released more DOC and TDN (mostly as DON) per gram soil than active-layer soils. Permafrost soil DOC biodegradability was significantly correlated with soil Δ14C and DOM optical properties. Our results demonstrate that near-surface Holocene permafrost soils preserve greater relative potential DOC and TDN yields than overlying seasonally frozen soils that are exposed to annual leaching and decomposition. While many factors control the fate of DOC and TDN, the greater relative yields from newly thawed Holocene permafrost soils will have the largest potential impact in areas dominated by organic-rich soils.

A tracer study of the deep water renewal in the European polar seas

NASA Astrophysics Data System (ADS)

Heinze, Ch.; Schlosser, P.; Koltermann, K. P.; Meincke, J.

1990-09-01

A study of the deep water renewal in the European polar seas (Norwegian Sea, Greenland Sea and Eurasian Basin) based on the distribution of tritium ( 3H), 3He, chlorofluoromethane (F-11 = CCL 3F), salinity and potential temperature is presented. Four different versions of a kinematic box model calibrated with the tracer data yield production rates and turnover times due to deep convection for Greenland Sea Deep Water (0.47-0.59 Sv, 27-34 y) and Eurasian Basin Deep Water (0.97-1.07 Sv, 83-92 y). Model calculations with different deep advective flow patterns (exchange at equal rates between each of the deep water masses or an internal circuit Eurasian Basin-Greenland Sea-Norwegian Sea-Eurasian Basin) give estimates of the deep horizontal transports, resulting in a turnover time of 13-16 years for Norwegian Sea Deep Water. The total turnover times (convection and deep advection) of the Greenland Sea and the Eurasian Basin are estimated to about 10 and 50 years, respectively. Mean hydrographic characteristics of the source water for Greenland Sea Deep Water and Eurasian Basin Deep Water are estimated from minimization of the deviations between modelled and observed hydrographic deep water values. The fractions of surface waters and intermediate waters making up the deep water of the Greenland Sea are estimated to about 80 and 20%, respectively.

Role of microgel formation in scavenging of chromophoric dissolved organic matter and heavy metals in a river-sea system.

PubMed

Shiu, Ruei-Feng; Lee, Chon-Lin

2017-04-15

We use riverine and marine dissolved organic carbon (DOC) polymers to examine their aggregation behavior, and to evaluate the roles of microgel formation in scavenging of chromophoric dissolved organic matter (CDOM) and heavy metals in a river-sea system. Our results indicate that riverine and marine microgels did not exhibit very much difference in size and self-assembly curve; however, the assembly effectiveness ([microgel]/DOC) of marine samples was much higher than riverine. Instead of concentration of DOC, other factors such as types and sources of DOC polymers may control the microgel abundance in aquatic environments. After filtering water samples (microgels removed), the CDOM and selected metals (Cu, Ni, Mn) in the filtrate were quantified. CDOM and metals were concurrently removed to an extent via DOC polymer re-aggregation, which also suggested that the microgels had sequestering capability in CDOM and metals. This finding provides an alternative route for CDOM and heavy metals removal from the water column. As such the process of re-aggregation into microgels should then be considered besides traditional phase partitioning in the assessment of the ecological risk and fate of hazardous materials. Copyright © 2017 Elsevier B.V. All rights reserved.

First glimpse into Lower Jurassic deep-sea biodiversity: in situ diversification and resilience against extinction

PubMed Central

Thuy, Ben; Kiel, Steffen; Dulai, Alfréd; Gale, Andy S.; Kroh, Andreas; Lord, Alan R.; Numberger-Thuy, Lea D.; Stöhr, Sabine; Wisshak, Max

2014-01-01

Owing to the assumed lack of deep-sea macrofossils older than the Late Cretaceous, very little is known about the geological history of deep-sea communities, and most inference-based hypotheses argue for repeated recolonizations of the deep sea from shelf habitats following major palaeoceanographic perturbations. We present a fossil deep-sea assemblage of echinoderms, gastropods, brachiopods and ostracods, from the Early Jurassic of the Glasenbach Gorge, Austria, which includes the oldest known representatives of a number of extant deep-sea groups, and thus implies that in situ diversification, in contrast to immigration from shelf habitats, played a much greater role in shaping modern deep-sea biodiversity than previously thought. A comparison with coeval shelf assemblages reveals that, at least in some of the analysed groups, significantly more extant families/superfamilies have endured in the deep sea since the Early Jurassic than in the shelf seas, which suggests that deep-sea biota are more resilient against extinction than shallow-water ones. In addition, a number of extant deep-sea families/superfamilies found in the Glasenbach assemblage lack post-Jurassic shelf occurrences, implying that if there was a complete extinction of the deep-sea fauna followed by replacement from the shelf, it must have happened before the Late Jurassic. PMID:24850917

UV/PAR radiations and DOM properties in surface coastal waters of the Canadian shelf of the Beaufort Sea during summer 2009

NASA Astrophysics Data System (ADS)

Para, J.; Charrière, B.; Matsuoka, A.; Miller, W. L.; Rontani, J. F.; Sempéré, R.

2012-11-01

Water masses from the Beaufort Sea in the Arctic Ocean were evaluated for dissolved organic carbon (DOC), and optical characteristics including UV and PAR diffuse attenuation (Kd), and chromophoric and fluorescent dissolved organic matter (CDOM and FDOM) as part of the MALINA field campaign (30 July to 27 August). Even with relatively low mean daily solar radiation incident on the sea surface (0.12 ± 0.03, 8.46 ± 1.64 and 18.09 ± 4.20 kJ m-2 for UV-B (305 nm), UV-A (380 nm) and PAR, respectively), we report significant light penetration with 10% irradiance depths (Z10% (λ)) reaching 9.5 m for 340 nm (UV-A) radiation in the Eastern sector and 4.5 m in the Mackenzie River influenced area (Western sector). Spectral absorption coefficients (aCDOM (350 nm) (m-1)) were significantly correlated to both diffuse attenuation coefficients (Kd) in the UV-A and UV-B and to DOC concentrations. This indicates CDOM as the dominant attenuator of UV solar radiation and suggests its use as an optical proxy for DOC concentrations in this region. Extrapolating CDOM to DOC relationships, we estimate that ~ 16% of the DOC in the Mackenzie River does not absorb radiation at 350 nm. DOC and CDOM discharges by the Mackenzie River during the MALINA Cruise are estimated as ~ 0.22 TgC and 0.18 TgC, respectively. Three dissolved fluorescent components (C1-C3) were identified by fluorescence Excitation/Emission Matrix Spectroscopy (EEMS) and PARAFAC analysis. Our results showed an in-situ biological component (C1) that co-dominated with a terrestrial humic-like component (C2) in the Mackenzie Delta sector, whereas the protein-like (C3) component dominated in the saltiest waters of the North East sector.

Gulf of Mexico Imagery - Satellite Products and Services Division/Office of

Science.gov Websites

Satellite and Product Operations Skip Navigation Link NESDIS banner image and link to NESDIS Home Page Default Office of Satellite and Product Operations banner image and link to OSPO DOC / NOAA Bleaching -- Ocean Color -- Sea/Lake Ice -- Sea Surface Height -- Sea Surface Temperatures -- Tropical

Tropical Pacific Imagery - Satellite Products and Services Division/Office

Science.gov Websites

of Satellite and Product Operations Skip Navigation Link NESDIS banner image and link to NESDIS Home Page Default Office of Satellite and Product Operations banner image and link to OSPO DOC / NOAA Bleaching -- Ocean Color -- Sea/Lake Ice -- Sea Surface Height -- Sea Surface Temperatures -- Tropical

Tropical Atlantic Imagery - Satellite Products and Services Division/Office

Science.gov Websites

of Satellite and Product Operations Skip Navigation Link NESDIS banner image and link to NESDIS Home Page Default Office of Satellite and Product Operations banner image and link to OSPO DOC / NOAA Bleaching -- Ocean Color -- Sea/Lake Ice -- Sea Surface Height -- Sea Surface Temperatures -- Tropical

46 CFR 167.40-20 - Deep-sea sounding apparatus.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 7 2014-10-01 2014-10-01 false Deep-sea sounding apparatus. 167.40-20 Section 167.40-20... SHIPS Certain Equipment Requirements § 167.40-20 Deep-sea sounding apparatus. Nautical school ships shall be equipped with an efficient or electronic deep-sea sounding apparatus. The electronic deep-sea...

46 CFR 167.40-20 - Deep-sea sounding apparatus.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 7 2012-10-01 2012-10-01 false Deep-sea sounding apparatus. 167.40-20 Section 167.40-20... SHIPS Certain Equipment Requirements § 167.40-20 Deep-sea sounding apparatus. Nautical school ships shall be equipped with an efficient or electronic deep-sea sounding apparatus. The electronic deep-sea...

47 CFR 32.2424 - Submarine & deep sea cable.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 47 Telecommunication 2 2011-10-01 2011-10-01 false Submarine & deep sea cable. 32.2424 Section 32... Submarine & deep sea cable. (a) This account shall include the original cost of submarine cable and deep sea... defined below, are to be maintained for nonmetallic submarine and deep sea cable and metallic submarine...

47 CFR 32.2424 - Submarine & deep sea cable.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 47 Telecommunication 2 2014-10-01 2014-10-01 false Submarine & deep sea cable. 32.2424 Section 32... Submarine & deep sea cable. (a) This account shall include the original cost of submarine cable and deep sea... defined below, are to be maintained for nonmetallic submarine and deep sea cable and metallic submarine...

47 CFR 32.2424 - Submarine & deep sea cable.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 47 Telecommunication 2 2010-10-01 2010-10-01 false Submarine & deep sea cable. 32.2424 Section 32... Submarine & deep sea cable. (a) This account shall include the original cost of submarine cable and deep sea... defined below, are to be maintained for nonmetallic submarine and deep sea cable and metallic submarine...

47 CFR 32.2424 - Submarine & deep sea cable.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 47 Telecommunication 2 2013-10-01 2013-10-01 false Submarine & deep sea cable. 32.2424 Section 32... Submarine & deep sea cable. (a) This account shall include the original cost of submarine cable and deep sea... defined below, are to be maintained for nonmetallic submarine and deep sea cable and metallic submarine...

47 CFR 32.2424 - Submarine & deep sea cable.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 47 Telecommunication 2 2012-10-01 2012-10-01 false Submarine & deep sea cable. 32.2424 Section 32... Submarine & deep sea cable. (a) This account shall include the original cost of submarine cable and deep sea... defined below, are to be maintained for nonmetallic submarine and deep sea cable and metallic submarine...

46 CFR 167.40-20 - Deep-sea sounding apparatus.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 7 2013-10-01 2013-10-01 false Deep-sea sounding apparatus. 167.40-20 Section 167.40-20... SHIPS Certain Equipment Requirements § 167.40-20 Deep-sea sounding apparatus. Nautical school ships shall be equipped with an efficient or electronic deep-sea sounding apparatus. The electronic deep-sea...

46 CFR 167.40-20 - Deep-sea sounding apparatus.

Code of Federal Regulations, 2011 CFR

2011-10-01

... SHIPS Certain Equipment Requirements § 167.40-20 Deep-sea sounding apparatus. Nautical school ships shall be equipped with an efficient or electronic deep-sea sounding apparatus. The electronic deep-sea... 46 Shipping 7 2011-10-01 2011-10-01 false Deep-sea sounding apparatus. 167.40-20 Section 167.40-20...

46 CFR 167.40-20 - Deep-sea sounding apparatus.

Code of Federal Regulations, 2010 CFR

2010-10-01

... SHIPS Certain Equipment Requirements § 167.40-20 Deep-sea sounding apparatus. Nautical school ships shall be equipped with an efficient or electronic deep-sea sounding apparatus. The electronic deep-sea... 46 Shipping 7 2010-10-01 2010-10-01 false Deep-sea sounding apparatus. 167.40-20 Section 167.40-20...

First biological measurements of deep-sea corals from the Red Sea.

PubMed

Roder, C; Berumen, M L; Bouwmeester, J; Papathanassiou, E; Al-Suwailem, A; Voolstra, C R

2013-10-03

It is usually assumed that metabolic constraints restrict deep-sea corals to cold-water habitats, with 'deep-sea' and 'cold-water' corals often used as synonymous. Here we report on the first measurements of biological characters of deep-sea corals from the central Red Sea, where they occur at temperatures exceeding 20°C in highly oligotrophic and oxygen-limited waters. Low respiration rates, low calcification rates, and minimized tissue cover indicate that a reduced metabolism is one of the key adaptations to prevailing environmental conditions. We investigated four sites and encountered six species of which at least two appear to be undescribed. One species is previously reported from the Red Sea but occurs in deep cold waters outside the Red Sea raising interesting questions about presumed environmental constraints for other deep-sea corals. Our findings suggest that the present understanding of deep-sea coral persistence and resilience needs to be revisited.

Stable isotopic composition of deep sea gorgonian corals (Primnoa spp.): a new archive of surface processes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sherwood, O A; Heikoop, J M; Scott, D B

2005-02-03

The deep-sea gorgonian coral Primnoa spp. lives in the Atlantic and Pacific Oceans at depths of 65-3200 m. This coral has an arborescent growth form with a skeletal axis composed of annual rings made from calcite and gorgonin. It has a lifespan of at least several hundred years. It has been suggested that isotopic profiles from the gorgonin fraction of the skeleton could be used to reconstruct long-term, annual-scale variations in surface productivity. We tested assumptions about the trophic level, intra-colony isotopic reproducibility, and preservation of isotopic signatures in a suite of modern and fossil specimens. Measurements of gorgonin {Delta}{supmore » 14}C and {delta}{sup 15}N indicate that Primnoa spp. feed mainly on zooplankton and/or sinking particulate organic matter (POM{sub SINK}), and not on suspended POM (POM{sub SUSP}) or dissolved organic carbon (DOC). Gorgonin {delta}{sup 13}C and {delta}{sup 15}N in specimens from NE Pacific shelf waters, NW Atlantic slope waters, the Sea of Japan, and a South Pacific (Southern Ocean sector) seamount were strongly correlated with Levitus 1994 surface apparent oxygen utilization (AOU; the best available measure of surface productivity), demonstrating coupling between skeletal isotopic ratios and biophysical processes in surface water. Time-series isotopic profiles from different sections along the same colony were identical for {delta}{sup 13}C, while {delta}{sup 15}N profiles became more dissimilar with increasing separation along the colony axis. Similarity in C:N, {delta}{sup 13}C and {delta}{sup 15}N between modern and fossil specimens suggest that isotopic signatures are preserved over millennial timescales. Finally, the utility of this new archive was demonstrated by reconstruction of 20th century bomb radiocarbon.« less

Removal of Chromophoric Dissolved Organic Matter and Heavy Metals in a River-Sea System: Role of Aquatic Microgel Formation

NASA Astrophysics Data System (ADS)

Shiu, R. F.; Lee, C. L.

2016-12-01

Dissolved organic carbon (DOC) polymers are complex and poorly understood mixture of organic macromolecules in environment system. Portions of these polymers spontaneously form microgels that play key roles in many biogeochemical reactions, including mediating aggregation processes, element cycling, and pollutant mobility. However, the detailed interaction of microgels-heterogeneous materials in aquatic systems is still lacking. Insight into the interaction between surrounding materials and microgels from different types of aquatic DOC polymers are extremely important, as it is crucial in determining the fate and transport of these materials. Here, we use riverine and marine DOC polymers to examine their aggregation behavior, and to evaluate the roles of microgel formation in scavenging of chromophoric dissolved organic matter (CDOM) and heavy metals in a river-sea system. Our results indicate that riverine and marine microgels did not exhibit too much difference in size ( 3-5 μm) and self-assembly curve; however, the assembly effectiveness ([microgel]/DOC) of marine samples was much higher than riverine. Instead of concentration of DOC, other factors such as types and sources of DOC polymers may control the microgel abundance in aquatic environments. After filtering water samples (microgels removed), the CDOM and selected metals (Cu, Ni, Mn) in the filtrate were quantified. CDOM and metals were concurrently removed to an extent via DOC polymer re-aggregation, which also suggested that the microgels had the sequestering capability in CDOM and metals. This finding provides an alternative route for CDOM and heavy metals removal from the water column. As such the process of re-aggregation into microgels should then be considered besides traditional phase partitioning in the assessment of the ecological risk and fate of pollutant.

75 FR 10248 - GB Energy Park, LLC; Notice of Preliminary Permit Application Accepted for Filing and Soliciting...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-05

...-deep, 3-mile-long canal carrying flows diverted from Cottonwood Creek by an existing diversion... on the Commission's Web site ( http://www.ferc.gov/docs-filing/ferconline.asp ) under the ``eFiling...Library'' link of Commission's Web site at http://www.ferc.gov/docs-filing/elibrary.asp . Enter the docket...

[Distribution of organic carbon and carbon fixed strength of phytoplankton in Enteromorpha prolifera outbreak area of the Western South Yellow Sea, 2008].

PubMed

Xia, Bin; Ma, Shao-Sai; Chen, Ju-Fa; Zhao, Jun; Chen, Bi-Juan; Wang, Fang

2010-06-01

Based on the analysis of dissolved organic carbon (DOC), particulate organic carbon (POC) and particulate nitrogen (PN) of the samples collected from stations in Enteromorpha prolifera outbreak area of the Western South Yellow Sea during the period August 9-13 of 2008, combining with the data of environmental hydrology, the horizontal distribution, source and influential factors of organic carbon and carbon fixed strength of phytoplankton were discussed. The results showed that the concentrations of DOC and POC ranged from 1.55 mg/L to 3.22 mg/L, 0.11 mg/L to 0.68 mg/L, with average values of 2.44 mg/L and 0.27 mg/L. The horizontal distributions of DOC and POC were similar in study area. The concentrations of DOC and POC in coastal area were higher than that in the outer sea and the concentrations of DOC and POC at surface water layer were higher than those at the bottom water layer. There were a positive correlation between POC and TSS, indicating that the concentrations and source of TSS were main factors for the POC. According to the univariate linear regression model between POC and PN, the concentrations of particulate inorganic nitrogen (PIN) were evaluated. Removing the content of PIN in the samples, the average POC/PON values in most coastal waters were less than 8, combining with the values of POC/chlorophyll a, suggesting that the marine primary production were the important source of POC in most coastal waters, and the presence of degraded organic matter which derived from degraded Enteromorph prolifera was in the latter period of green tide outbreak. The results of evaluated carbon fixed strength based on primary productivity showed that carbon fixed strength of phytoplankton in Enteromorpha prolifera outbreak area of the Western South Yellow Sea ranged from 167 mg/(m2 x d) to 2017 mg/(m2 x d), with the average of 730 mg/(m2 x d). The daily carbon fixed quantities of the study area were up to 2.95 x 10(4) t. Then the daily carbon fixed quantities of the Yellow Sea were 28.03 x 10(4) t.

77 FR 35850 - Safety Zone; F/V Deep Sea, Penn Cove, WA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-15

... 1625-AA00 Safety Zone; F/V Deep Sea, Penn Cove, WA AGENCY: Coast Guard, DHS. ACTION: Temporary final rule. SUMMARY: The Coast Guard is establishing a safety zone around the Fishing Vessel (F/V) Deep Sea... with the sunken F/V Deep Sea. B. Basis and Purpose On the evening of May 13, 2012, the F/V Deep Sea...

Heterotrophic bacterioplankton control on organic and inorganic carbon cycle in stratified and non-stratified lakes of NW Russia

NASA Astrophysics Data System (ADS)

Shirokova, Liudmila; Vorobjeva, Taissia; Zabelina, Svetlana; Moreva, Olga; Klimov, Sergey; Shorina, Natalja; Chupakov, Artem; Pokrovsky, Oleg; Audry, Stephan; Viers, Jerome

2010-05-01

Lakes of boreal zone regulate the fate of dissolved carbon, nutrients and trace metals during their transport from the watershed to the ocean. Study of primary production - mineralization processes in the context of carbon biogeochemical cycle allows determination of the rate and mechanisms of phytoplankton biomass production and its degradation via aquatic heterotrophic bacteria. In particular, comparative study of vertical distribution of Dissolved Organic Carbon (DOC) in stratified and non-stratified lakes allows establishing the link between biological and chemical aspects of the carbon cycle which, in turns, determines an environmental stability and recovering potential of the entire ecosystem. In order to better understand the biogeochemical mechanisms that control dissolved organic and inorganic carbon migration in surface boreal waters, we studied in 2007-2009 two strongly stratified lakes (15-20 m deep) and two shallow lakes (2-4 m deep) in the Arkhangelsk region (NW Russia, White Sea basin). We conducted natural experiments of the lake water incubation for measurements of the intensity of production/mineralization processes and we determined vertical concentration of DOC during four basic hydrological seasons (winter and summer stratification, and spring and autumn lake overturn). Our seasonal studies of production/mineralization processes demonstrated high intensity of organic matter formation during summer period and significant retard of these processes during winter stagnation. During spring period, there is a strong increase of bacterial destruction of the allochtonous organic matter that is being delivered to the lake via terrigenous input. During autumn overturn, there is a decrease of the activity of phytoplankton, and the degradation of dead biomass by active bacterial community. Organic matter destruction processes are the most active in Svyatoe lake, whereas in the Beloe lake, the rate of organic matter production is significantly higher than its bacterial degradation, and in the Maselgskoe lake the aerobic mineralization plays insignificant role. Seasonally-stratified lake Svyatoe demonstrates systematic decrease of DOC concentration from the surface to the bottom horizon during summer and winter stagnation, whereas lake Maselgskoe exhibits an increase of DOC in the bottom horizons during winter stratification. During the autumn and spring overturn, we observe rather constant concentration of DOC due to well mixing of the water masses and low activity of the phytoplankton community. Results of the present work allow the evaluation of biotic and abitioc components of the biogeochemical cycle of carbon in small stratified and non-stratified lakes of the Arctic Ocean basin. They allow quantification of the direct link between the processes of primary production/heterotrophic bacteria mineralization and vertical profile of organic and inorganic carbon concentration.

First biological measurements of deep-sea corals from the Red Sea

PubMed Central

Roder, C.; Berumen, M. L.; Bouwmeester, J.; Papathanassiou, E.; Al-Suwailem, A.; Voolstra, C. R.

2013-01-01

It is usually assumed that metabolic constraints restrict deep-sea corals to cold-water habitats, with ‘deep-sea’ and ‘cold-water’ corals often used as synonymous. Here we report on the first measurements of biological characters of deep-sea corals from the central Red Sea, where they occur at temperatures exceeding 20°C in highly oligotrophic and oxygen-limited waters. Low respiration rates, low calcification rates, and minimized tissue cover indicate that a reduced metabolism is one of the key adaptations to prevailing environmental conditions. We investigated four sites and encountered six species of which at least two appear to be undescribed. One species is previously reported from the Red Sea but occurs in deep cold waters outside the Red Sea raising interesting questions about presumed environmental constraints for other deep-sea corals. Our findings suggest that the present understanding of deep-sea coral persistence and resilience needs to be revisited. PMID:24091830

The characteristics of dissolved organic matter (DOM) and chromophoric dissolved organic matter (CDOM) in Antarctic sea ice

NASA Astrophysics Data System (ADS)

Norman, Louiza; Thomas, David N.; Stedmon, Colin A.; Granskog, Mats A.; Papadimitriou, Stathys; Krapp, Rupert H.; Meiners, Klaus M.; Lannuzel, Delphine; van der Merwe, Pier; Dieckmann, Gerhard S.

2011-05-01

An investigation of coloured dissolved organic matter (CDOM) and its relationships to physical and biogeochemical parameters in Antarctic sea ice and oceanic water have indicated that ice melt may both alter the spectral characteristics of CDOM in Antarctic surface waters and serve as a likely source of fresh autochthonous CDOM and labile DOC. Samples were collected from melted bulk sea ice, sea ice brines, surface gap layer waters, and seawater during three expeditions: one during the spring to summer and two during the winter to spring transition period. Variability in both physical (temperature and salinity) and biogeochemical parameters (dissolved and particulate organic carbon and nitrogen, as well as chlorophyll a) was observed during and between studies, but CDOM absorption coefficients measured at 375 nm (a 375) did not differ significantly. Distinct peaked absorption spectra were consistently observed for bulk ice, brine, and gap water, but were absent in the seawater samples. Correlation with the measured physical and biogeochemical parameters could not resolve the source of these peaks, but the shoulders and peaks observed between 260 and 280 nm and between 320 to 330 nm respectively, particularly in the samples taken from high light-exposed gap layer environment, suggest a possible link to aromatic and mycosporine-like amino acids. Sea ice CDOM susceptibility to photo-bleaching was demonstrated in an in situ 120 hour exposure, during which we observed a loss in CDOM absorption of 53% at 280 nm, 58% at 330 nm, and 30% at 375 nm. No overall coincidental loss of DOC or DON was measured during the experimental period. A relationship between the spectral slope (S) and carbon-specific absorption (a *375) indicated that the characteristics of CDOM can be described by the mixing of two broad end-members; and aged material, present in brine and seawater samples characterised by high S values and low a *375; and a fresh material, due to elevated in situ production, present in the bulk ice samples characterised by low S and high a *375. The DOC data reported here have been used to estimate that approximately 8 Tg C yr -1 (˜11% of annual sea ice algae primary production) may be exported to the surface ocean during seasonal sea ice melt in the form of DOC.

Characterization of Light Non-Methane Hydrocarbons, Surface Water DOC, and Aerosols over the Nordic Seas

NASA Astrophysics Data System (ADS)

Hudson, E. D.; Ariya, P. A.

2006-12-01

Whole air, size-fractionated marine aerosols, and surface ocean water DOC were sampled together during June-July 2004 on the Nordic seas, in order to explore factors leading to the formation of volatile organic compounds (VOCs) at the sea surface and their transfer to the atmosphere. High site-to-site variability in 19 non-methane hydrocarbon concentrations suggests highly variable, local sources for these compounds. Acetone, C5 and C6 hydrocarbons, and dimethylsulfide were identified in the seawater samples using solid-phase microextraction/GC-MS. The aerosols were analysed by SEM-EDX and contained primarily inorganic material (sea salt, marine sulfates, and carbonates) and little organic matter. However, a culturable bacterium was isolated from the large (9.9 - 18 μ m) fraction at one site, and identified as Micrococcus luteus. We will discuss the implication of these results on potential exchange processes at the ocean-atmosphere interface and the impact of bioaerosols in transferring marine organic carbon to atmospheric organic carbon.

75 FR 49420 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-13

.... 100513223-0289-02] RIN 0648-AY88 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic Deep-Sea Red Crab Specifications In- season Adjustment AGENCY: National Marine...-sea (DAS) allocation for the Atlantic deep- sea red crab fishery that were implemented in May 2010...

Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance.

PubMed

Nakagawa, Satoshi; Takai, Ken

2008-07-01

Deep-sea vents support productive ecosystems driven primarily by chemoautotrophs. Chemoautotrophs are organisms that are able to fix inorganic carbon using a chemical energy obtained through the oxidation of reduced compounds. Following the discovery of deep-sea vent ecosystems in 1977, there has been an increasing knowledge that deep-sea vent chemoautotrophs display remarkable physiological and phylogenetic diversity. Cultivation-dependent and -independent studies have led to an emerging view that the majority of deep-sea vent chemoautotrophs have the ability to derive energy from a variety of redox couples other than the conventional sulfur-oxygen couple, and fix inorganic carbon via the reductive tricarboxylic acid cycle. In addition, recent genomic, metagenomic and postgenomic studies have considerably accelerated the comprehensive understanding of molecular mechanisms of deep-sea vent chemoautotrophy, even in yet uncultivable endosymbionts of vent fauna. Genomic analysis also suggested that there are previously unrecognized evolutionary links between deep-sea vent chemoautotrophs and important human/animal pathogens. This review summarizes chemoautotrophy in deep-sea vents, highlighting recent biochemical and genomic discoveries.

Antecedent conditions control carbon loss and downstream water quality from shallow, damaged peatlands.

PubMed

Grand-Clement, E; Luscombe, D J; Anderson, K; Gatis, N; Benaud, P; Brazier, R E

2014-09-15

Losses of dissolved organic carbon (DOC) from drained peatlands are of concern, due to the effects this has on the delivery of ecosystem services, and especially on the long-term store of carbon and the provision of drinking water. Most studies have looked at the effect of drainage in deep peat; comparatively, little is known about the behaviour of shallow, climatically marginal peatlands. This study examines water quality (DOC, Abs(400), pH, E4/E6 and C/C) during rainfall events from such environments in the south west UK, in order to both quantify DOC losses, and understand their potential for restoration. Water samples were taken over a 19 month period from a range of drains within two different experimental catchments in Exmoor National Park; data were analysed on an event basis. DOC concentrations ranging between 4 and 21 mg L(-1) are substantially lower than measurements in deep peat, but remain problematic for the water treatment process. Dryness plays a critical role in controlling DOC concentrations and water quality, as observed through spatial and seasonal differences. Long-term changes in depth to water table (30 days before the event) are likely to impact on DOC production, whereas discharge becomes the main control over DOC transport at the time scale of the rainfall/runoff event. The role of temperature during events is attributed to an increase in the diffusion of DOC, and therefore its transport. Humification ratios (E4/E6) consistently below 5 indicate a predominance of complex humic acids, but increased decomposition during warmer summer months leads to a comparatively higher losses of fulvic acids. This work represents a significant contribution to the scientific understanding of the behaviour and functioning of shallow damaged peatlands in climatically marginal locations. The findings also provide a sound baseline knowledge to support research into the effects of landscape restoration in the future. Crown Copyright © 2014. Published by Elsevier B.V. All rights reserved.

Deep brain stimulation for disorders of consciousness: Systematic review of cases and ethics.

PubMed

Vanhoecke, Jonathan; Hariz, Marwan

A treatment for patients suffering from prolonged severely altered consciousness is not available. The success of Deep Brain Stimulation (DBS) in diseases such as Parkinson's, dystonia and essential tremor provided a renewed impetus for its application in Disorders of Consciousness (DoC). To evaluate the rationale for DBS in patients with DoC, through systematic review of literature containing clinical data and ethical considerations. Articles from PubMed, Embase, Medline and Web of Science were systematically reviewed. The outcomes of 78 individual patients reported in 19 articles from 1968 onwards were pooled and elements of ethical discussions were compared. There is no clear clinical evidence that DBS is a treatment for DoC that can restore both consciousness and the ability to communicate. In patients who benefitted, the outcome of DBS is often confounded by the time frame of spontaneous recovery from DoC. Difficult ethical considerations remain, such as the risk of increasing self-awareness of own limitations, without improving overall wellbeing, and the issues of proxy consent. DBS is far from being evident as a possible future therapeutic avenue for patients with DoC. Double-blind studies are lacking, and many clinical and ethical issues have to be addressed. In the rare cases when DBS for patients with DoC is considered, this needs to be evaluated meticulously on a case by case basis, with comprehensive overall outcome measures including psychological and quality-of-life assessments, and with the guidance of an ethical and interdisciplinary panel, especially in relation to proxy consent. Copyright © 2017 Elsevier Inc. All rights reserved.

75 FR 35435 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-22

.... 100513223-0254-01] RIN 0648-AY88 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic Deep-Sea Red Crab Specifications In- season Adjustment AGENCY: National Marine... deep-sea red crab fishery, including a target total allowable catch (TAC) and a fleet-wide days-at-sea...

Extreme Longevity in Proteinaceous Deep-Sea Corals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roark, E B; Guilderson, T P; Dunbar, R B

2009-02-09

Deep-sea corals are found on hard substrates on seamounts and continental margins world-wide at depths of 300 to {approx}3000 meters. Deep-sea coral communities are hotspots of deep ocean biomass and biodiversity, providing critical habitat for fish and invertebrates. Newly applied radiocarbon age date from the deep water proteinaceous corals Gerardia sp. and Leiopathes glaberrima show that radial growth rates are as low as 4 to 35 {micro}m yr{sup -1} and that individual colony longevities are on the order of thousands of years. The management and conservation of deep sea coral communities is challenged by their commercial harvest for the jewelrymore » trade and damage caused by deep water fishing practices. In light of their unusual longevity, a better understanding of deep sea coral ecology and their interrelationships with associated benthic communities is needed to inform coherent international conservation strategies for these important deep-sea ecosystems.« less

Ancient origin of the modern deep-sea fauna.

PubMed

Thuy, Ben; Gale, Andy S; Kroh, Andreas; Kucera, Michal; Numberger-Thuy, Lea D; Reich, Mike; Stöhr, Sabine

2012-01-01

The origin and possible antiquity of the spectacularly diverse modern deep-sea fauna has been debated since the beginning of deep-sea research in the mid-nineteenth century. Recent hypotheses, based on biogeographic patterns and molecular clock estimates, support a latest Mesozoic or early Cenozoic date for the origin of key groups of the present deep-sea fauna (echinoids, octopods). This relatively young age is consistent with hypotheses that argue for extensive extinction during Jurassic and Cretaceous Oceanic Anoxic Events (OAEs) and the mid-Cenozoic cooling of deep-water masses, implying repeated re-colonization by immigration of taxa from shallow-water habitats. Here we report on a well-preserved echinoderm assemblage from deep-sea (1000-1500 m paleodepth) sediments of the NE-Atlantic of Early Cretaceous age (114 Ma). The assemblage is strikingly similar to that of extant bathyal echinoderm communities in composition, including families and genera found exclusively in modern deep-sea habitats. A number of taxa found in the assemblage have no fossil record at shelf depths postdating the assemblage, which precludes the possibility of deep-sea recolonization from shallow habitats following episodic extinction at least for those groups. Our discovery provides the first key fossil evidence that a significant part of the modern deep-sea fauna is considerably older than previously assumed. As a consequence, most major paleoceanographic events had far less impact on the diversity of deep-sea faunas than has been implied. It also suggests that deep-sea biota are more resilient to extinction events than shallow-water forms, and that the unusual deep-sea environment, indeed, provides evolutionary stability which is very rarely punctuated on macroevolutionary time scales.

Oxygenation of Ediacaran Ocean recorded by iron isotopes

NASA Astrophysics Data System (ADS)

Fan, Haifeng; Zhu, Xiangkun; Wen, Hanjie; Yan, Bin; Li, Jin; Feng, Lianjun

2014-09-01

The increase in atmospheric oxygen during the late Neoproterozoic Era (ca. 800-542 Ma) may have stimulated the oxygenation of the deep oceans and the evolution of macroscopic multicellular organisms. However, the mechanism and magnitude of Neoproterozoic oxygenation remain uncertain. We present Fe isotopes, Fe species and other geochemical data for two sections of the Doushantuo Formation (ca. 635-551 Ma) deposited after the Nantuo glacial episode in the Yangtze Gorge area, South China. It is highlighted that highly positive δ56Fe values reflect a lower oxidation rate of Fe(II)aq under ferruginous conditions, and in turn near zero δ56Fe values indicate oxidizing conditions. Our study suggests that during the deposition of the bottom of Member II of the Doushantuo Formation the shallow seawater was oxic, but the deep water was characterized by ferruginous conditions, which is consistent with a redox chemical stratification model. Subsequent anoxic conditions under shallow seawater, represented by positive δ56Fe and negative δ13Ccarb excursions, should be ascribed to the upwelling of Fe(II)aq and dissolved organic carbon (DOC)-rich anoxic deep seawater. The oxidation of Fe (II)aq and DOC-rich anoxic deep seawater upon mixing with oxic shallow water provides an innovative explanation for the well-known negative δ13Ccarb excursions (ENC2) and positive δ56Fe excursions in the middle of Doushantuo Formation. Meanwhile, the upwelling Fe (II)aq- and DOC-rich anoxic deep seawater could increase photosynthetic activity. The balance between oxygen consumption and production was most important criteria for the oxygenation of Early Ediacaran Ocean and diversity of eukaryotic organisms.

Deep-Sea Biodiversity in the Mediterranean Sea: The Known, the Unknown, and the Unknowable

PubMed Central

Danovaro, Roberto; Company, Joan Batista; Corinaldesi, Cinzia; D'Onghia, Gianfranco; Galil, Bella; Gambi, Cristina; Gooday, Andrew J.; Lampadariou, Nikolaos; Luna, Gian Marco; Morigi, Caterina; Olu, Karine; Polymenakou, Paraskevi; Ramirez-Llodra, Eva; Sabbatini, Anna; Sardà, Francesc; Sibuet, Myriam; Tselepides, Anastasios

2010-01-01

Deep-sea ecosystems represent the largest biome of the global biosphere, but knowledge of their biodiversity is still scant. The Mediterranean basin has been proposed as a hot spot of terrestrial and coastal marine biodiversity but has been supposed to be impoverished of deep-sea species richness. We summarized all available information on benthic biodiversity (Prokaryotes, Foraminifera, Meiofauna, Macrofauna, and Megafauna) in different deep-sea ecosystems of the Mediterranean Sea (200 to more than 4,000 m depth), including open slopes, deep basins, canyons, cold seeps, seamounts, deep-water corals and deep-hypersaline anoxic basins and analyzed overall longitudinal and bathymetric patterns. We show that in contrast to what was expected from the sharp decrease in organic carbon fluxes and reduced faunal abundance, the deep-sea biodiversity of both the eastern and the western basins of the Mediterranean Sea is similarly high. All of the biodiversity components, except Bacteria and Archaea, displayed a decreasing pattern with increasing water depth, but to a different extent for each component. Unlike patterns observed for faunal abundance, highest negative values of the slopes of the biodiversity patterns were observed for Meiofauna, followed by Macrofauna and Megafauna. Comparison of the biodiversity associated with open slopes, deep basins, canyons, and deep-water corals showed that the deep basins were the least diverse. Rarefaction curves allowed us to estimate the expected number of species for each benthic component in different bathymetric ranges. A large fraction of exclusive species was associated with each specific habitat or ecosystem. Thus, each deep-sea ecosystem contributes significantly to overall biodiversity. From theoretical extrapolations we estimate that the overall deep-sea Mediterranean biodiversity (excluding prokaryotes) reaches approximately 2805 species of which about 66% is still undiscovered. Among the biotic components investigated (Prokaryotes excluded), most of the unknown species are within the phylum Nematoda, followed by Foraminifera, but an important fraction of macrofaunal and megafaunal species also remains unknown. Data reported here provide new insights into the patterns of biodiversity in the deep-sea Mediterranean and new clues for future investigations aimed at identifying the factors controlling and threatening deep-sea biodiversity. PMID:20689848

Deep-sea biodiversity in the Mediterranean Sea: the known, the unknown, and the unknowable.

PubMed

Danovaro, Roberto; Company, Joan Batista; Corinaldesi, Cinzia; D'Onghia, Gianfranco; Galil, Bella; Gambi, Cristina; Gooday, Andrew J; Lampadariou, Nikolaos; Luna, Gian Marco; Morigi, Caterina; Olu, Karine; Polymenakou, Paraskevi; Ramirez-Llodra, Eva; Sabbatini, Anna; Sardà, Francesc; Sibuet, Myriam; Tselepides, Anastasios

2010-08-02

Deep-sea ecosystems represent the largest biome of the global biosphere, but knowledge of their biodiversity is still scant. The Mediterranean basin has been proposed as a hot spot of terrestrial and coastal marine biodiversity but has been supposed to be impoverished of deep-sea species richness. We summarized all available information on benthic biodiversity (Prokaryotes, Foraminifera, Meiofauna, Macrofauna, and Megafauna) in different deep-sea ecosystems of the Mediterranean Sea (200 to more than 4,000 m depth), including open slopes, deep basins, canyons, cold seeps, seamounts, deep-water corals and deep-hypersaline anoxic basins and analyzed overall longitudinal and bathymetric patterns. We show that in contrast to what was expected from the sharp decrease in organic carbon fluxes and reduced faunal abundance, the deep-sea biodiversity of both the eastern and the western basins of the Mediterranean Sea is similarly high. All of the biodiversity components, except Bacteria and Archaea, displayed a decreasing pattern with increasing water depth, but to a different extent for each component. Unlike patterns observed for faunal abundance, highest negative values of the slopes of the biodiversity patterns were observed for Meiofauna, followed by Macrofauna and Megafauna. Comparison of the biodiversity associated with open slopes, deep basins, canyons, and deep-water corals showed that the deep basins were the least diverse. Rarefaction curves allowed us to estimate the expected number of species for each benthic component in different bathymetric ranges. A large fraction of exclusive species was associated with each specific habitat or ecosystem. Thus, each deep-sea ecosystem contributes significantly to overall biodiversity. From theoretical extrapolations we estimate that the overall deep-sea Mediterranean biodiversity (excluding prokaryotes) reaches approximately 2805 species of which about 66% is still undiscovered. Among the biotic components investigated (Prokaryotes excluded), most of the unknown species are within the phylum Nematoda, followed by Foraminifera, but an important fraction of macrofaunal and megafaunal species also remains unknown. Data reported here provide new insights into the patterns of biodiversity in the deep-sea Mediterranean and new clues for future investigations aimed at identifying the factors controlling and threatening deep-sea biodiversity.

Deep-sea piezosphere and piezophiles: geomicrobiology and biogeochemistry.

PubMed

Fang, Jiasong; Zhang, Li; Bazylinski, Dennis A

2010-09-01

The deep-sea piezosphere accounts for approximately 75% of the total ocean volume and hosts active and diverse biological communities. Evidence obtained thus far suggests that the microbial biomass present in the piezosphere is significant. Continued international interest in exploring the deep ocean provides impetus to increase our understanding of the deep-sea piezosphere and of the influence of piezophilic microbial communities on the global ocean environment and on biogeochemical cycling occurring in the deep sea. Here, we review the diversity, metabolic characteristics, geomicrobiology and biogeochemistry of the deep-sea piezophiles. Copyright 2010 Elsevier Ltd. All rights reserved.

Exploitation of deep-sea resources: the urgent need to understand the role of high pressure in the toxicity of chemical pollutants to deep-sea organisms.

PubMed

Mestre, Nélia C; Calado, Ricardo; Soares, Amadeu M V M

2014-02-01

The advent of industrial activities in the deep sea will inevitably expose deep-sea organisms to potentially toxic compounds. Although international regulations require environmental risk assessment prior to exploitation activities, toxicity tests remain focused on shallow-water model species. Moreover, current tests overlook potential synergies that may arise from the interaction of chemicals with natural stressors, such as the high pressures prevailing in the deep sea. As pressure affects chemical reactions and the physiology of marine organisms, it will certainly affect the toxicity of pollutants arising from the exploitation of deep-sea resources. We emphasize the need for environmental risk assessments based on information generated from ecotoxicological trials that mimic, as close as possible, the deep-sea environment, with emphasis to a key environmental factor - high hydrostatic pressure. Copyright © 2013 Elsevier Ltd. All rights reserved.

47 CFR 32.6424 - Submarine and deep sea cable expense.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 47 Telecommunication 2 2011-10-01 2011-10-01 false Submarine and deep sea cable expense. 32.6424... Submarine and deep sea cable expense. (a) This account shall include expenses associated with submarine and deep sea cable. (b) Subsidiary record categories shall be maintained as provided in § 32.2424. [67 FR...

47 CFR 32.6424 - Submarine and deep sea cable expense.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 47 Telecommunication 2 2013-10-01 2013-10-01 false Submarine and deep sea cable expense. 32.6424... Submarine and deep sea cable expense. (a) This account shall include expenses associated with submarine and deep sea cable. (b) Subsidiary record categories shall be maintained as provided in § 32.2424. [67 FR...

47 CFR 32.6424 - Submarine and deep sea cable expense.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 47 Telecommunication 2 2012-10-01 2012-10-01 false Submarine and deep sea cable expense. 32.6424... Submarine and deep sea cable expense. (a) This account shall include expenses associated with submarine and deep sea cable. (b) Subsidiary record categories shall be maintained as provided in § 32.2424. [67 FR...

47 CFR 32.6424 - Submarine and deep sea cable expense.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 47 Telecommunication 2 2014-10-01 2014-10-01 false Submarine and deep sea cable expense. 32.6424... Submarine and deep sea cable expense. (a) This account shall include expenses associated with submarine and deep sea cable. (b) Subsidiary record categories shall be maintained as provided in § 32.2424. [67 FR...

47 CFR 32.6424 - Submarine and deep sea cable expense.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 47 Telecommunication 2 2010-10-01 2010-10-01 false Submarine and deep sea cable expense. 32.6424... Submarine and deep sea cable expense. (a) This account shall include expenses associated with submarine and deep sea cable. (b) Subsidiary record categories shall be maintained as provided in § 32.2424. [67 FR...

Deep-water longline fishing has reduced impact on Vulnerable Marine Ecosystems

PubMed Central

Pham, Christopher K.; Diogo, Hugo; Menezes, Gui; Porteiro, Filipe; Braga-Henriques, Andreia; Vandeperre, Frederic; Morato, Telmo

2014-01-01

Bottom trawl fishing threatens deep-sea ecosystems, modifying the seafloor morphology and its physical properties, with dramatic consequences on benthic communities. Therefore, the future of deep-sea fishing relies on alternative techniques that maintain the health of deep-sea ecosystems and tolerate appropriate human uses of the marine environment. In this study, we demonstrate that deep-sea bottom longline fishing has little impact on vulnerable marine ecosystems, reducing bycatch of cold-water corals and limiting additional damage to benthic communities. We found that slow-growing vulnerable species are still common in areas subject to more than 20 years of longlining activity and estimate that one deep-sea bottom trawl will have a similar impact to 296–1,719 longlines, depending on the morphological complexity of the impacted species. Given the pronounced differences in the magnitude of disturbances coupled with its selectivity and low fuel consumption, we suggest that regulated deep-sea longlining can be an alternative to deep-sea bottom trawling. PMID:24776718

The dynamics of biogeographic ranges in the deep sea.

PubMed

McClain, Craig R; Hardy, Sarah Mincks

2010-12-07

Anthropogenic disturbances such as fishing, mining, oil drilling, bioprospecting, warming, and acidification in the deep sea are increasing, yet generalities about deep-sea biogeography remain elusive. Owing to the lack of perceived environmental variability and geographical barriers, ranges of deep-sea species were traditionally assumed to be exceedingly large. In contrast, seamount and chemosynthetic habitats with reported high endemicity challenge the broad applicability of a single biogeographic paradigm for the deep sea. New research benefiting from higher resolution sampling, molecular methods and public databases can now more rigorously examine dispersal distances and species ranges on the vast ocean floor. Here, we explore the major outstanding questions in deep-sea biogeography. Based on current evidence, many taxa appear broadly distributed across the deep sea, a pattern replicated in both the abyssal plains and specialized environments such as hydrothermal vents. Cold waters may slow larval metabolism and development augmenting the great intrinsic ability for dispersal among many deep-sea species. Currents, environmental shifts, and topography can prove to be dispersal barriers but are often semipermeable. Evidence of historical events such as points of faunal origin and climatic fluctuations are also evident in contemporary biogeographic ranges. Continued synthetic analysis, database construction, theoretical advancement and field sampling will be required to further refine hypotheses regarding deep-sea biogeography.

The dynamics of biogeographic ranges in the deep sea

PubMed Central

McClain, Craig R.; Hardy, Sarah Mincks

2010-01-01

Anthropogenic disturbances such as fishing, mining, oil drilling, bioprospecting, warming, and acidification in the deep sea are increasing, yet generalities about deep-sea biogeography remain elusive. Owing to the lack of perceived environmental variability and geographical barriers, ranges of deep-sea species were traditionally assumed to be exceedingly large. In contrast, seamount and chemosynthetic habitats with reported high endemicity challenge the broad applicability of a single biogeographic paradigm for the deep sea. New research benefiting from higher resolution sampling, molecular methods and public databases can now more rigorously examine dispersal distances and species ranges on the vast ocean floor. Here, we explore the major outstanding questions in deep-sea biogeography. Based on current evidence, many taxa appear broadly distributed across the deep sea, a pattern replicated in both the abyssal plains and specialized environments such as hydrothermal vents. Cold waters may slow larval metabolism and development augmenting the great intrinsic ability for dispersal among many deep-sea species. Currents, environmental shifts, and topography can prove to be dispersal barriers but are often semipermeable. Evidence of historical events such as points of faunal origin and climatic fluctuations are also evident in contemporary biogeographic ranges. Continued synthetic analysis, database construction, theoretical advancement and field sampling will be required to further refine hypotheses regarding deep-sea biogeography. PMID:20667884

78 FR 18334 - JAL Hydro, LLC; Notice of Preliminary Permit Application Accepted for Filing and Soliciting...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-26

...) a new 130-foot-long, 20-foot-wide, 6-foot-deep concrete intake channel; (4) a new 10-foot-high, 20... on the Commission's Web site http://www.ferc.gov/docs-filing/efiling.asp . Commenters can submit... viewed or printed on the ``eLibrary'' link of Commission's Web site at http://www.ferc.gov/docs-filing...

Sea-level and deep-sea-temperature variability over the past 5.3 million years.

PubMed

Rohling, E J; Foster, G L; Grant, K M; Marino, G; Roberts, A P; Tamisiea, M E; Williams, F

2014-04-24

Ice volume (and hence sea level) and deep-sea temperature are key measures of global climate change. Sea level has been documented using several independent methods over the past 0.5 million years (Myr). Older periods, however, lack such independent validation; all existing records are related to deep-sea oxygen isotope (δ(18)O) data that are influenced by processes unrelated to sea level. For deep-sea temperature, only one continuous high-resolution (Mg/Ca-based) record exists, with related sea-level estimates, spanning the past 1.5 Myr. Here we present a novel sea-level reconstruction, with associated estimates of deep-sea temperature, which independently validates the previous 0-1.5 Myr reconstruction and extends it back to 5.3 Myr ago. We find that deep-sea temperature and sea level generally decreased through time, but distinctly out of synchrony, which is remarkable given the importance of ice-albedo feedbacks on the radiative forcing of climate. In particular, we observe a large temporal offset during the onset of Plio-Pleistocene ice ages, between a marked cooling step at 2.73 Myr ago and the first major glaciation at 2.15 Myr ago. Last, we tentatively infer that ice sheets may have grown largest during glacials with more modest reductions in deep-sea temperature.

Deep-water zooplankton in the Mediterranean Sea: Results from a continuous, synchronous sampling over different regions using sediment traps

NASA Astrophysics Data System (ADS)

Danovaro, R.; Carugati, L.; Boldrin, A.; Calafat, A.; Canals, M.; Fabres, J.; Finlay, K.; Heussner, S.; Miserocchi, S.; Sanchez-Vidal, A.

2017-08-01

Information on the dynamics of deep-sea biota is extremely scant particularly for long-term time series on deep-sea zooplankton. Here, we present the results of a deep-sea zooplankton investigation over one annual cycle based on samples from sediment trap moorings in three sub-basins along the Mediterranean Sea. Deep-sea zooplankton assemblages were dominated by copepods, as in shallow waters, only in the Adriatic Sea (>60% of total abundance), but not in the deep Ionian Sea, where ostracods represented >80%, neither in the deep Alboran Sea, where polychaetes were >70%. We found that deep-sea zooplankton assemblages: i) are subjected to changes in their abundance and structure over time, ii) are characterized by different dominant taxa in different basins, and iii) display clear taxonomic segregation between shallow and near-bottom waters. Zooplankton biodiversity decreases with increasing water depth, but the equitability increases. We suggest here that variations of zooplankton abundance and assemblage structure are likely influenced by the trophic condition characterizing the basins. Our findings provide new insights on this largely unknown component of the deep ocean, and suggest that changes in the export of organic matter from the photic zone, such as those expected as a consequence of global change, can significantly influence zooplankton assemblages in the largest biome on Earth.

Deep-Sea Coral Image Catalog: Northeast Pacific

NASA Astrophysics Data System (ADS)

Freed, J. C.

2016-02-01

In recent years, deep-sea exploration in the Northeast Pacific ocean has been on the rise using submersibles and remotely operated vehicles (ROVs), acquiring a plethora of underwater videos and photographs. Analysis of deep-sea fauna revealed by this research has been hampered by the lack of catalogs or guides that allow identification of species in the field. Deep-sea corals are of particular conservation concern, but currently, there are few catalogs which describe and provide detailed information on deep-sea corals from the Northeast Pacific and those that exist are focused on small, specific areas. This project, in collaboration with NOAA's Deep-Sea Coral Ecology Laboratory at the Center for Coastal Environmental Health and Biomolecular Research (CCEHBR) and the Southwest Fisheries Science Center (SWFSC), developed pages for a deep-sea coral identification guide that provides photos and information on the visual identification, distributions, and habitats of species found in the Northeast Pacific. Using online databases, photo galleries, and literature, this catalog has been developed to be a living document open to future additions. This project produced 12 entries for the catalog on a variety of different deep-sea corals. The catalog is intended to be used during underwater surveys in the Northeast Pacific, but will also assist in identification of deep-sea coral by-catch by fishing vessels, and for general educational use. These uses will advance NOAA's ability to identify and protect sensitive deep-sea habitats that act as biological hotspots. The catalog is intended to be further developed into an online resource with greater interactive features with links to other resources and featured on NOAA's Deep-Sea Coral Data Portal.

Concentration and characterization of dissolved organic matter in the surface microlayer and subsurface water of the Bohai Sea, China

NASA Astrophysics Data System (ADS)

Chen, Yan; Yang, Gui-Peng; Wu, Guan-Wei; Gao, Xian-Chi; Xia, Qing-Yan

2013-01-01

A total of 19 sea-surface microlayer and corresponding subsurface samples collected from the Bohai Sea, China in April 2010 were analyzed for chlorophyll a, dissolved organic carbon (DOC) and its major compound classes including total dissolved carbohydrates (TDCHO, including monosaccharides, MCHO, and polysaccharides, PCHO) and total hydrolysable amino acids (THAA, including dissolved free, DFAA, and combined fraction, DCAA). The concentrations of DOC in the subsurface water ranged from 130.2 to 407.7 μM C, with an average of 225.9±75.4 μM C, while those in the surface microlayer varied between 140.1 and 330.9 μM C, with an average of 217.8±56.8 μM C. The concentrations of chlorophyll a, DOC, TDCHO and THAA in the microlayer were, respectively correlated with their subsurface water concentrations, implying that there was a strong exchange effect between the microlayer and subsurface water. The concentrations of DOC and TDCHO were negatively correlated with salinity, respectively, indicating that water mixing might play an important role in controlling the distribution of DOC and TDCHO in the water column. Major constituents of DCAA and DFAA present in the study area were glycine, alanine, glutamic acid, serine and histidine. Principal component analysis (PCA) was applied to examine the complex compositional differences that existed among the sampling sites. Our results showed that DFAA had higher mole percentages of glycine, valine and serine in the microlayer than in the subsurface water, while DCAA tended to have higher mole percentages of glutamic acid, aspartic acid, threonine, arginine, alanine, tyrosine, phenylalanine and leucine in the microlayer. The yields of TDCHO and THAA exhibited similar trends between the microlayer and subsurface water. Carbohydrate species displayed significant enrichment in the microlayer, whereas the DFAA and DCAA exhibited non-uniform enrichment in the microlayer.

75 FR 7435 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-02-19

.... 100105009-0053-01] RIN 0648-AY51 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic Deep-Sea Red Crab Specifications AGENCY: National Marine Fisheries Service (NMFS... comments. SUMMARY: NMFS proposes 2010 specifications for the Atlantic deep-sea red crab fishery, including...

75 FR 27219 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-14

.... 100105009-0167-02] RIN 0648-AY51 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab Fisheries; 2010 Atlantic Deep-Sea Red Crab Specifications AGENCY: National Marine Fisheries Service (NMFS... final specifications for the 2010 Atlantic deep- sea red crab fishery, including a target total...

Transdermal Bioavailability in Rats of Lidocaine in the Forms of Ionic Liquids, Salts, and Deep Eutectic.

PubMed

Berton, Paula; Di Bona, Kristin R; Yancey, Denise; Rizvi, Syed A A; Gray, Marquita; Gurau, Gabriela; Shamshina, Julia L; Rasco, Jane F; Rogers, Robin D

2017-05-11

Tuning the bioavailability of lidocaine was explored by its incorporation into the ionic liquid lidocainium docusate ([Lid][Doc]) and the deep eutectic Lidocaine·Ibuprofen (Lid·Ibu) and comparing the transdermal absorption of these with the crystalline salt lidocainium chloride ([Lid]Cl). Each form of lidocaine was dissolved in a vehicle cream and topically applied to Sprague-Dawley rats. The concentrations of the active pharmaceutical ingredients (APIs) in blood plasma were monitored over time as an indication of systemic absorption. The concentration of lidocaine in plasma varied between applied API-based creams, with faster and higher systemic absorption of the hydrogen bonded deep eutectic Lid·Ibu than the absorption of the salts [Lid]Cl or [Lid][Doc]. Interestingly, a differential transdermal absorption was observed between lidocaine and ibuprofen when Lid·Ibu was applied, possibly indicating different interactions with the tissue components.

Transdermal Bioavailability in Rats of Lidocaine in the Forms of Ionic Liquids, Salts, and Deep Eutectic

PubMed Central

2017-01-01

Tuning the bioavailability of lidocaine was explored by its incorporation into the ionic liquid lidocainium docusate ([Lid][Doc]) and the deep eutectic Lidocaine·Ibuprofen (Lid·Ibu) and comparing the transdermal absorption of these with the crystalline salt lidocainium chloride ([Lid]Cl). Each form of lidocaine was dissolved in a vehicle cream and topically applied to Sprague–Dawley rats. The concentrations of the active pharmaceutical ingredients (APIs) in blood plasma were monitored over time as an indication of systemic absorption. The concentration of lidocaine in plasma varied between applied API-based creams, with faster and higher systemic absorption of the hydrogen bonded deep eutectic Lid·Ibu than the absorption of the salts [Lid]Cl or [Lid][Doc]. Interestingly, a differential transdermal absorption was observed between lidocaine and ibuprofen when Lid·Ibu was applied, possibly indicating different interactions with the tissue components. PMID:28523100

Factors affecting distribution patterns of organic carbon in sediments at regional and national scales in China.

PubMed

Cao, Qingqing; Wang, Hui; Zhang, Yiran; Lal, Rattan; Wang, Renqing; Ge, Xiuli; Liu, Jian

2017-07-14

Wetlands are an important carbon reservoir pool in terrestrial ecosystems. Light fraction organic carbon (LFOC), heavy fraction organic carbon (HFOC), and dissolved organic carbon (DOC) were fractionated in sediment samples from the four wetlands (ZR: Zhaoniu River; ZRCW: Zhaoniu River Constructed Wetland; XR: Xinxue River; XRCW: Xinxue River Constructed Wetland). Organic carbon (OC) from rivers and coasts of China were retrieved and statistically analyzed. At regional scale, HFOC stably dominates the deposition of OC (95.4%), whereas DOC and LFOC in ZR is significantly higher than in ZRCW. Concentration of DOC is significantly higher in XRCW (30.37 mg/l) than that in XR (13.59 mg/l). DOC and HFOC notably distinguish between two sampling campaigns, and the deposition of carbon fractions are limited by low nitrogen input. At the national scale, OC attains the maximum of 2.29% at precipitation of 800 mm. OC has no significant difference among the three climate zones but significantly higher in river sediments than in coasts. Coastal OC increases from Bohai Sea (0.52%) to South Sea (0.70%) with a decrease in latitude. This study summarizes the factors affecting organic carbon storage in regional and national scale, and have constructive implications for carbon assessment, modelling, and management.

Cosmopolitanism and Biogeography of the Genus Manganonema (Nematoda: Monhysterida) in the Deep Sea

PubMed Central

Zeppilli, Daniela; Vanreusel, Ann; Danovaro, Roberto

2011-01-01

Simple Summary The deep sea comprises more than 60% of the Earth surface, and likely represents the largest reservoir of as yet undiscovered biodiversity. Nematodes are the most abundant taxon on Earth and are particularly abundant and diverse in the deep sea. Nevertheless, knowledge of their biogeography especially in the deep sea is still at its infancy. This article explores the distribution of the genus Manganonema in the deep Atlantic Ocean and Mediterranean Sea providing new insights about this apparently rare deep-sea genus. Abstract Spatial patterns of species diversity provide information about the mechanisms that regulate biodiversity and are important for setting conservation priorities. Present knowledge of the biogeography of meiofauna in the deep sea is scarce. This investigation focuses on the distribution of the deep-sea nematode genus Manganonema, which is typically extremely rare in deep-sea sediment samples. Forty-four specimens of eight different species of this genus were recorded from different Atlantic and Mediterranean regions. Four out of the eight species encountered are new to science. We report here that this genus is widespread both in the Atlantic and in the Mediterranean Sea. These new findings together with literature information indicate that Manganonema is a cosmopolitan genus, inhabiting a variety of deep-sea habitats and oceans. Manganonema shows the highest diversity at water depths >4,000 m. Our data, therefore, indicate that this is preferentially an abyssal genus that is able, at the same time, to colonize specific habitats at depths shallower than 1,000 m. The analysis of the distribution of the genus Manganonema indicates the presence of large differences in dispersal strategies among different species, ranging from locally endemic to cosmopolitan. Lacking meroplanktonic larvae and having limited dispersal ability due to their small size, it has been hypothesized that nematodes have limited dispersal potential. However, the investigated deep-sea nematodes were present across different oceans covering macro-scale distances. Among the possible explanations (hydrological conditions, geographical and geological pathways, long-term processes, specific historical events), their apparent preference of colonizing highly hydrodynamic systems, could suggest that these infaunal organisms are transported by means of deep-sea benthic storms and turbidity currents over long distances. PMID:26486501

Effect of Minerals on Intestinal IgA Production Using Deep Sea Water Drinks.

PubMed

Shiraishi, Hisashi; Fujino, Maho; Shirakawa, Naoki; Ishida, Nanao; Funato, Hiroki; Hirata, Ayumu; Abe, Noriaki; Iizuka, Michiro; Jobu, Kohei; Yokota, Junko; Miyamura, Mitsuhiko

2017-01-01

Minerals are essential for life, as they are a vital part of protein constituents, enzyme cofactors, and other components in living organisms. Deep sea water is characterized by its cleanliness and stable low temperature, and its possible health- and medical benefits are being studied. However, no study has yet evaluated the physical properties of the numerous commercially available deep sea water products, which have varying water sources and production methods. We analyzed these products' mineral content and investigated their effect on living organism, focusing on immune functions, and investigated the relation between physiological immunoactivities and mineral intake. We qualitatively analyzed the mineral compositions of the deep sea water drinks and evaluated the drinks' physical properties using principal component analysis, a type of multivariate analysis, of their mineral content. We create an iron and copper-deficient rat model and administered deep sea water drinks for 8 weeks. We then measured their fecal immunoglobulin A (IgA) to evaluate immune function. Principal component analysis suggested that physical properties of deep sea water drinks could be determined by their sources. Administration of deep sea water drinks increased fecal IgA, thus tending to stimulate immune function, but the extent of this effect varied by drink. Of the minerals contained in deep sea water, iron showed positive correlations with the fecal IgA. The principal component analysis used in this study is suitable for evaluating deep sea water containing many minerals, and our results form a useful basis for comparative evaluations of deep sea water's bioactivity.

Deep-sea ciliates: Recorded diversity and experimental studies on pressure tolerance

NASA Astrophysics Data System (ADS)

Schoenle, Alexandra; Nitsche, Frank; Werner, Jennifer; Arndt, Hartmut

2017-10-01

Microbial eukaryotes play an important role in biogeochemical cycles not only in productive surface waters but also in the deep sea. Recent studies based on metagenomics report deep-sea protistan assemblages totally different from continental slopes and shelf waters. To give an overview about the ciliate fauna recorded from the deep sea we summarized the available information on ciliate occurrence in the deep sea. Our literature review revealed that representatives of the major phylogenetic groups of ciliates were recorded from the deep sea (> 1000 m depth): Karyorelictea, Heterotrichea, Spirotrichea (Protohypotrichia, Euplotia, Oligotrichia, Choreotrichia, Hypotrichia), Armophorea (Armophorida), Litostomatea (Haptoria), Conthreep (Phyllopharyngea incl. Cyrtophoria, Chonotrichia, Suctoria; Nassophorea incl. Microthoracida, Synhymeniida, Nassulida; Colpodea incl. Bursariomorphida, Cyrtolophosidida; Prostomatea; Plagiopylea incl. Plagiopylida, Odontostomatida; Oligohymenophorea incl. Peniculia, Scuticociliatia, Hymenostomatia, Apostomatia, Peritrichia, Astomatia). Species occurring in both habitats, deep sea and shallow water, are rarely found to our knowledge to date. This indicates a high deep-sea specific ciliate fauna. Our own studies of similar genotypes (SSU rDNA and cox1 gene) revealed that two small scuticociliate species (Pseudocohnilembus persalinus and Uronema sp.) could be isolated from surface as well as deep waters (2687 m, 5276 m, 5719 m) of the Pacific. The adaptation to deep-sea conditions was investigated by exposing the ciliate isolates directly or stepwise to different hydrostatic pressures ranging from 1 to 550 atm at temperatures of 2 °C and 13 °C. Although the results indicated no general barophilic behavior, all four isolated strains survived the highest established pressure. A better survival at 550 atm could be observed for the lower temperature. Among microbial eukaryotes, ciliates should be considered as a diverse and potentially important component of deep-sea microeukaryote communities.

Exponential decline of deep-sea ecosystem functioning linked to benthic biodiversity loss.

PubMed

Danovaro, Roberto; Gambi, Cristina; Dell'Anno, Antonio; Corinaldesi, Cinzia; Fraschetti, Simonetta; Vanreusel, Ann; Vincx, Magda; Gooday, Andrew J

2008-01-08

Recent investigations suggest that biodiversity loss might impair the functioning and sustainability of ecosystems. Although deep-sea ecosystems are the most extensive on Earth, represent the largest reservoir of biomass, and host a large proportion of undiscovered biodiversity, the data needed to evaluate the consequences of biodiversity loss on the ocean floor are completely lacking. Here, we present a global-scale study based on 116 deep-sea sites that relates benthic biodiversity to several independent indicators of ecosystem functioning and efficiency. We show that deep-sea ecosystem functioning is exponentially related to deep-sea biodiversity and that ecosystem efficiency is also exponentially linked to functional biodiversity. These results suggest that a higher biodiversity supports higher rates of ecosystem processes and an increased efficiency with which these processes are performed. The exponential relationships presented here, being consistent across a wide range of deep-sea ecosystems, suggest that mutually positive functional interactions (ecological facilitation) can be common in the largest biome of our biosphere. Our results suggest that a biodiversity loss in deep-sea ecosystems might be associated with exponential reductions of their functions. Because the deep sea plays a key role in ecological and biogeochemical processes at a global scale, this study provides scientific evidence that the conservation of deep-sea biodiversity is a priority for a sustainable functioning of the worlds' oceans.

Integrated Metagenomic and Metatranscriptomic Analyses of Microbial Communities in the Meso- and Bathypelagic Realm of North Pacific Ocean

PubMed Central

Wu, Jieying; Gao, Weimin; Johnson, Roger H.; Zhang, Weiwen; Meldrum, Deirdre R.

2013-01-01

Although emerging evidence indicates that deep-sea water contains an untapped reservoir of high metabolic and genetic diversity, this realm has not been studied well compared with surface sea water. The study provided the first integrated meta-genomic and -transcriptomic analysis of the microbial communities in deep-sea water of North Pacific Ocean. DNA/RNA amplifications and simultaneous metagenomic and metatranscriptomic analyses were employed to discover information concerning deep-sea microbial communities from four different deep-sea sites ranging from the mesopelagic to pelagic ocean. Within the prokaryotic community, bacteria is absolutely dominant (~90%) over archaea in both metagenomic and metatranscriptomic data pools. The emergence of archaeal phyla Crenarchaeota, Euryarchaeota, Thaumarchaeota, bacterial phyla Actinobacteria, Firmicutes, sub-phyla Betaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria, and the decrease of bacterial phyla Bacteroidetes and Alphaproteobacteria are the main composition changes of prokaryotic communities in the deep-sea water, when compared with the reference Global Ocean Sampling Expedition (GOS) surface water. Photosynthetic Cyanobacteria exist in all four metagenomic libraries and two metatranscriptomic libraries. In Eukaryota community, decreased abundance of fungi and algae in deep sea was observed. RNA/DNA ratio was employed as an index to show metabolic activity strength of microbes in deep sea. Functional analysis indicated that deep-sea microbes are leading a defensive lifestyle. PMID:24152557

Microplastic pollution in deep-sea sediments.

PubMed

Van Cauwenberghe, Lisbeth; Vanreusel, Ann; Mees, Jan; Janssen, Colin R

2013-11-01

Microplastics are small plastic particles (<1 mm) originating from the degradation of larger plastic debris. These microplastics have been accumulating in the marine environment for decades and have been detected throughout the water column and in sublittoral and beach sediments worldwide. However, up to now, it has never been established whether microplastic presence in sediments is limited to accumulation hot spots such as the continental shelf, or whether they are also present in deep-sea sediments. Here we show, for the first time ever, that microplastics have indeed reached the most remote of marine environments: the deep sea. We found plastic particles sized in the micrometre range in deep-sea sediments collected at four locations representing different deep-sea habitats ranging in depth from 1100 to 5000 m. Our results demonstrate that microplastic pollution has spread throughout the world's seas and oceans, into the remote and largely unknown deep sea. Copyright © 2013. Published by Elsevier Ltd.

On the Use of Ocean Color Remote Sensing to Measure the Transport of Dissolved Organic Carbon by the Mississippi River Plume

NASA Technical Reports Server (NTRS)

DelCastillo, Carlos E.; Miller, Richard L.

2007-01-01

We investigated the use of ocean color remote sensing to measure transport of dissolved organic carbon (DOC) by the Mississippi River to the Gulf of Mexico. From 2000 to 2005 we recorded surface measurements of DOC, colored dissolved organic matter (CDOM), salinity, and water-leaving radiances during five cruises to the Mississippi River Plume. These measurements were used to develop empirical relationships to derive CDOM, DOC, and salinity from monthly composites of SeaWiFS imagery collected from 1998 through 2005. We used river flow data and a two-end-member mixing model to derive DOC concentrations in the river end-member, river flow, and DOC transport using remote sensing data. We compared our remote sensing estimates of river flow and DOC transport with data collected by the United States Geological Survey (USGS) from 1998 through 2005. Our remote sensing estimates of river flow and DOC transport correlated well (r2 0.70) with the USGS data. Our remote sensing estimates and USGS field data showed low variability in DOC concentrations in the river end-member (7-11%), and high seasonal variability in river flow (50%). Therefore, changes in river flow control the variability in DOC transport, indicating that the remote sensing estimate of river flow is the most critical element of our DOC transport measurement. We concluded that it is possible to use this method to estimate DOC transport by other large rivers if there are data on the relationship between CDOM, DOC, and salinity in the river plume.

Deep-sea bioluminescence blooms after dense water formation at the ocean surface.

PubMed

Tamburini, Christian; Canals, Miquel; Durrieu de Madron, Xavier; Houpert, Loïc; Lefèvre, Dominique; Martini, Séverine; D'Ortenzio, Fabrizio; Robert, Anne; Testor, Pierre; Aguilar, Juan Antonio; Samarai, Imen Al; Albert, Arnaud; André, Michel; Anghinolfi, Marco; Anton, Gisela; Anvar, Shebli; Ardid, Miguel; Jesus, Ana Carolina Assis; Astraatmadja, Tri L; Aubert, Jean-Jacques; Baret, Bruny; Basa, Stéphane; Bertin, Vincent; Biagi, Simone; Bigi, Armando; Bigongiari, Ciro; Bogazzi, Claudio; Bou-Cabo, Manuel; Bouhou, Boutayeb; Bouwhuis, Mieke C; Brunner, Jurgen; Busto, José; Camarena, Francisco; Capone, Antonio; Cârloganu, Christina; Carminati, Giada; Carr, John; Cecchini, Stefano; Charif, Ziad; Charvis, Philippe; Chiarusi, Tommaso; Circella, Marco; Coniglione, Rosa; Costantini, Heide; Coyle, Paschal; Curtil, Christian; Decowski, Patrick; Dekeyser, Ivan; Deschamps, Anne; Donzaud, Corinne; Dornic, Damien; Dorosti, Hasankiadeh Q; Drouhin, Doriane; Eberl, Thomas; Emanuele, Umberto; Ernenwein, Jean-Pierre; Escoffier, Stéphanie; Fermani, Paolo; Ferri, Marcelino; Flaminio, Vincenzo; Folger, Florian; Fritsch, Ulf; Fuda, Jean-Luc; Galatà, Salvatore; Gay, Pascal; Giacomelli, Giorgio; Giordano, Valentina; Gómez-González, Juan-Pablo; Graf, Kay; Guillard, Goulven; Halladjian, Garadeb; Hallewell, Gregory; van Haren, Hans; Hartman, Joris; Heijboer, Aart J; Hello, Yann; Hernández-Rey, Juan Jose; Herold, Bjoern; Hößl, Jurgen; Hsu, Ching-Cheng; de Jong, Marteen; Kadler, Matthias; Kalekin, Oleg; Kappes, Alexander; Katz, Uli; Kavatsyuk, Oksana; Kooijman, Paul; Kopper, Claudio; Kouchner, Antoine; Kreykenbohm, Ingo; Kulikovskiy, Vladimir; Lahmann, Robert; Lamare, Patrick; Larosa, Giuseppina; Lattuada, Dario; Lim, Gordon; Presti, Domenico Lo; Loehner, Herbert; Loucatos, Sotiris; Mangano, Salvatore; Marcelin, Michel; Margiotta, Annarita; Martinez-Mora, Juan Antonio; Meli, Athina; Montaruli, Teresa; Moscoso, Luciano; Motz, Holger; Neff, Max; Nezri, Emma Nuel; Palioselitis, Dimitris; Păvălaş, Gabriela E; Payet, Kevin; Payre, Patrice; Petrovic, Jelena; Piattelli, Paolo; Picot-Clemente, Nicolas; Popa, Vlad; Pradier, Thierry; Presani, Eleonora; Racca, Chantal; Reed, Corey; Riccobene, Giorgio; Richardt, Carsten; Richter, Roland; Rivière, Colas; Roensch, Kathrin; Rostovtsev, Andrei; Ruiz-Rivas, Joaquin; Rujoiu, Marius; Russo, Valerio G; Salesa, Francisco; Sánchez-Losa, Augustin; Sapienza, Piera; Schöck, Friederike; Schuller, Jean-Pierre; Schussler, Fabian; Shanidze, Rezo; Simeone, Francesco; Spies, Andreas; Spurio, Maurizio; Steijger, Jos J M; Stolarczyk, Thierry; Taiuti, Mauro G F; Toscano, Simona; Vallage, Bertrand; Van Elewyck, Véronique; Vannoni, Giulia; Vecchi, Manuela; Vernin, Pascal; Wijnker, Guus; Wilms, Jorn; de Wolf, Els; Yepes, Harold; Zaborov, Dmitry; De Dios Zornoza, Juan; Zúñiga, Juan

2013-01-01

The deep ocean is the largest and least known ecosystem on Earth. It hosts numerous pelagic organisms, most of which are able to emit light. Here we present a unique data set consisting of a 2.5-year long record of light emission by deep-sea pelagic organisms, measured from December 2007 to June 2010 at the ANTARES underwater neutrino telescope in the deep NW Mediterranean Sea, jointly with synchronous hydrological records. This is the longest continuous time-series of deep-sea bioluminescence ever recorded. Our record reveals several weeks long, seasonal bioluminescence blooms with light intensity up to two orders of magnitude higher than background values, which correlate to changes in the properties of deep waters. Such changes are triggered by the winter cooling and evaporation experienced by the upper ocean layer in the Gulf of Lion that leads to the formation and subsequent sinking of dense water through a process known as "open-sea convection". It episodically renews the deep water of the study area and conveys fresh organic matter that fuels the deep ecosystems. Luminous bacteria most likely are the main contributors to the observed deep-sea bioluminescence blooms. Our observations demonstrate a consistent and rapid connection between deep open-sea convection and bathypelagic biological activity, as expressed by bioluminescence. In a setting where dense water formation events are likely to decline under global warming scenarios enhancing ocean stratification, in situ observatories become essential as environmental sentinels for the monitoring and understanding of deep-sea ecosystem shifts.

Non-Redfieldian Dynamics Explain Seasonal pCO2 Drawdown in the Gulf of Bothnia

NASA Astrophysics Data System (ADS)

Fransner, Filippa; Gustafsson, Erik; Tedesco, Letizia; Vichi, Marcello; Hordoir, Robinson; Roquet, Fabien; Spilling, Kristian; Kuznetsov, Ivan; Eilola, Kari; Mörth, Carl-Magnus; Humborg, Christoph; Nycander, Jonas

2018-01-01

High inputs of nutrients and organic matter make coastal seas places of intense air-sea CO2 exchange. Due to their complexity, the role of coastal seas in the global air-sea CO2 exchange is, however, still uncertain. Here, we investigate the role of phytoplankton stoichiometric flexibility and extracellular DOC production for the seasonal nutrient and CO2 partial pressure (pCO2) dynamics in the Gulf of Bothnia, Northern Baltic Sea. A 3-D ocean biogeochemical-physical model with variable phytoplankton stoichiometry is for the first time implemented in the area and validated against observations. By simulating non-Redfieldian internal phytoplankton stoichiometry, and a relatively large production of extracellular dissolved organic carbon (DOC), the model adequately reproduces observed seasonal cycles in macronutrients and pCO2. The uptake of atmospheric CO2 is underestimated by 50% if instead using the Redfield ratio to determine the carbon assimilation, as in other Baltic Sea models currently in use. The model further suggests, based on the observed drawdown of pCO2, that observational estimates of organic carbon production in the Gulf of Bothnia, derived with the 14C method, may be heavily underestimated. We conclude that stoichiometric variability and uncoupling of carbon and nutrient assimilation have to be considered in order to better understand the carbon cycle in coastal seas.

The deep-sea under global change.

PubMed

Danovaro, Roberto; Corinaldesi, Cinzia; Dell'Anno, Antonio; Snelgrove, Paul V R

2017-06-05

The deep ocean encompasses 95% of the oceans' volume and is the largest and least explored biome of Earth's Biosphere. New life forms are continuously being discovered. The physiological mechanisms allowing organisms to adapt to extreme conditions of the deep ocean (high pressures, from very low to very high temperatures, food shortage, lack of solar light) are still largely unknown. Some deep-sea species have very long life-spans, whereas others can tolerate toxic compounds at high concentrations; these characteristics offer an opportunity to explore the specialized biochemical and physiological mechanisms associated with these responses. Widespread symbiotic relationships play fundamental roles in driving host functions, nutrition, health, and evolution. Deep-sea organisms communicate and interact through sound emissions, chemical signals and bioluminescence. Several giants of the oceans hunt exclusively at depth, and new studies reveal a tight connection between processes in the shallow water and some deep-sea species. Limited biological knowledge of the deep-sea limits our capacity to predict future response of deep-sea organisms subject to increasing human pressure and changing global environmental conditions. Molecular tools, sensor-tagged animals, in situ and laboratory experiments, and new technologies can enable unprecedented advancement of deep-sea biology, and facilitate the sustainable management of deep ocean use under global change. Copyright © 2017. Published by Elsevier Ltd.

Quantitative Comparison of the in situ Microbial Communities in Different Biomes

DTIC Science & Technology

1995-09-01

70 60 50 40 [ a: 30 Ŕ ~ 20 10 o Neotrop. Neotrop_ Antartic . Antartic . -Deep Sea Deep Sea Austral. USA East West Surface 9·10 em...surface (n = 20) (21). ’" LL -’ a. " 2 𔃺 C w 2 ’" a. 60 50 40 30 20 10 o Neotrop. Neolrop. Antartic . Antartic . Deep Sea Deep Sea Austral

Insights into Deep-Sea Sediment Fungal Communities from the East Indian Ocean Using Targeted Environmental Sequencing Combined with Traditional Cultivation

PubMed Central

Zhang, Xiao-yong; Tang, Gui-ling; Xu, Xin-ya; Nong, Xu-hua; Qi, Shu-Hua

2014-01-01

The fungal diversity in deep-sea environments has recently gained an increasing amount attention. Our knowledge and understanding of the true fungal diversity and the role it plays in deep-sea environments, however, is still limited. We investigated the fungal community structure in five sediments from a depth of ∼4000 m in the East India Ocean using a combination of targeted environmental sequencing and traditional cultivation. This approach resulted in the recovery of a total of 45 fungal operational taxonomic units (OTUs) and 20 culturable fungal phylotypes. This finding indicates that there is a great amount of fungal diversity in the deep-sea sediments collected in the East Indian Ocean. Three fungal OTUs and one culturable phylotype demonstrated high divergence (89%–97%) from the existing sequences in the GenBank. Moreover, 44.4% fungal OTUs and 30% culturable fungal phylotypes are new reports for deep-sea sediments. These results suggest that the deep-sea sediments from the East India Ocean can serve as habitats for new fungal communities compared with other deep-sea environments. In addition, different fungal community could be detected when using targeted environmental sequencing compared with traditional cultivation in this study, which suggests that a combination of targeted environmental sequencing and traditional cultivation will generate a more diverse fungal community in deep-sea environments than using either targeted environmental sequencing or traditional cultivation alone. This study is the first to report new insights into the fungal communities in deep-sea sediments from the East Indian Ocean, which increases our knowledge and understanding of the fungal diversity in deep-sea environments. PMID:25272044

Deep-sea genetic resources: New frontiers for science and stewardship in areas beyond national jurisdiction

NASA Astrophysics Data System (ADS)

Harden-Davies, Harriet

2017-03-01

The deep-sea is a large source of marine genetic resources (MGR), which have many potential uses and are a growing area of research. Much of the deep-sea lies in areas beyond national jurisdiction (ABNJ), including 65% of the global ocean. MGR in ABNJ occupy a significant gap in the international legal framework. Access and benefit sharing of MGR is a key issue in the development of a new international legally-binding instrument under the United Nations Convention on the Law of the Sea (UNCLOS) for the conservation and sustainable use of marine biological diversity in ABNJ. This paper examines how this is relevant to deep-sea scientific research and identifies emerging challenges and opportunities. There is no internationally agreed definition of MGR, however, deep-sea genetic resources could incorporate any biological material including genes, proteins and natural products. Deep-sea scientific research is the key actor accessing MGR in ABNJ and sharing benefits such as data, samples and knowledge. UNCLOS provides the international legal framework for marine scientific research, international science cooperation, capacity building and marine technology transfer. Enhanced implementation could support access and benefit sharing of MGR in ABNJ. Deep-sea scientific researchers could play an important role in informing practical new governance solutions for access and benefit sharing of MGR that promote scientific research in ABNJ and support deep-sea stewardship. Advancing knowledge of deep-sea biodiversity in ABNJ, enhancing open-access to data and samples, standardisation and international marine science cooperation are significant potential opportunity areas.

Deep-sea macrourid fishes scavenge on plant material: Evidence from in situ observations

NASA Astrophysics Data System (ADS)

Jeffreys, Rachel M.; Lavaleye, Marc S. S.; Bergman, Magda J. N.; Duineveld, Gerard C. A.; Witbaard, Rob; Linley, Thom

2010-04-01

Deep-sea benthic communities primarily rely on an allochthonous food source. This may be in the form of phytodetritus or as food falls e.g. sinking carcasses of nekton or debris of marine macrophyte algae. Deep-sea macrourids are the most abundant demersal fish in the deep ocean. Macrourids are generally considered to be the apex predators/scavengers in deep-sea communities. Baited camera experiments and stable isotope analyses have demonstrated that animal carrion derived from the surface waters is an important component in the diets of macrourids; some macrourid stomachs also contained vegetable/plant material e.g. onion peels, oranges, algae. The latter observations led us to the question: is plant material an attractive food source for deep-sea scavenging fish? We simulated a plant food fall using in situ benthic lander systems equipped with a baited time-lapse camera. Abyssal macrourids and cusk-eels were attracted to the bait, both feeding vigorously on the bait, and the majority of the bait was consumed in <30 h. These observations indicate (1) plant material can produce an odour plume similar to that of animal carrion and attracts deep-sea fish, and (2) deep-sea fish readily eat plant material. This represents to our knowledge the first in situ documentation of deep-sea fish ingesting plant material and highlights the variability in the scavenging nature of deep-sea fishes. This may have implications for food webs in areas where macrophyte/seagrass detritus is abundant at the seafloor e.g. canyon systems and continental shelves close to seagrass meadows (Bahamas and Mediterranean).

Exploring fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing

NASA Astrophysics Data System (ADS)

Zhang, Xiao-Yong; Wang, Guang-Hua; Xu, Xin-Ya; Nong, Xu-Hua; Wang, Jie; Amin, Muhammad; Qi, Shu-Hua

2016-10-01

The present study investigated the fungal diversity in four different deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing of the nuclear ribosomal internal transcribed spacer-1 (ITS1). A total of 40,297 fungal ITS1 sequences clustered into 420 operational taxonomic units (OTUs) with 97% sequence similarity and 170 taxa were recovered from these sediments. Most ITS1 sequences (78%) belonged to the phylum Ascomycota, followed by Basidiomycota (17.3%), Zygomycota (1.5%) and Chytridiomycota (0.8%), and a small proportion (2.4%) belonged to unassigned fungal phyla. Compared with previous studies on fungal diversity of sediments from deep-sea environments by culture-dependent approach and clone library analysis, the present result suggested that Illumina sequencing had been dramatically accelerating the discovery of fungal community of deep-sea sediments. Furthermore, our results revealed that Sordariomycetes was the most diverse and abundant fungal class in this study, challenging the traditional view that the diversity of Sordariomycetes phylotypes was low in the deep-sea environments. In addition, more than 12 taxa accounted for 21.5% sequences were found to be rarely reported as deep-sea fungi, suggesting the deep-sea sediments from Okinawa Trough harbored a plethora of different fungal communities compared with other deep-sea environments. To our knowledge, this study is the first exploration of the fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing.

75 FR 78234 - Lock+TM

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-15

... project (Project No. 13780-000) would consist of: (1) An 85-foot-long, 100-foot-wide, 14-foot-deep excavated power canal; (2) a 95-foot-long, 100-foot-wide, 10-foot-deep excavated tailrace; (3) a 100-foot...)(iii) and the instructions on the Commission's Web site http://www.ferc.gov/docs-filing/efiling.asp...

Adaptation and evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species

NASA Astrophysics Data System (ADS)

Zhang, Yanjie; Sun, Jin; Chen, Chong; Watanabe, Hiromi K.; Feng, Dong; Zhang, Yu; Chiu, Jill M. Y.; Qian, Pei-Yuan; Qiu, Jian-Wen

2017-04-01

Polynoid scale worms (Polynoidae, Annelida) invaded deep-sea chemosynthesis-based ecosystems approximately 60 million years ago, but little is known about their genetic adaptation to the extreme deep-sea environment. In this study, we reported the first two transcriptomes of deep-sea polynoids (Branchipolynoe pettiboneae, Lepidonotopodium sp.) and compared them with the transcriptome of a shallow-water polynoid (Harmothoe imbricata). We determined codon and amino acid usage, positive selected genes, highly expressed genes and putative duplicated genes. Transcriptome assembly produced 98,806 to 225,709 contigs in the three species. There were more positively charged amino acids (i.e., histidine and arginine) and less negatively charged amino acids (i.e., aspartic acid and glutamic acid) in the deep-sea species. There were 120 genes showing clear evidence of positive selection. Among the 10% most highly expressed genes, there were more hemoglobin genes with high expression levels in both deep-sea species. The duplicated genes related to DNA recombination and metabolism, and gene expression were only enriched in deep-sea species. Deep-sea scale worms adopted two strategies of adaptation to hypoxia in the chemosynthesis-based habitats (i.e., rapid evolution of tetra-domain hemoglobin in Branchipolynoe or high expression of single-domain hemoglobin in Lepidonotopodium sp.).

Mechanism of deep-sea fish α-actin pressure tolerance investigated by molecular dynamics simulations.

PubMed

Wakai, Nobuhiko; Takemura, Kazuhiro; Morita, Takami; Kitao, Akio

2014-01-01

The pressure tolerance of monomeric α-actin proteins from the deep-sea fish Coryphaenoides armatus and C. yaquinae was compared to that of non-deep-sea fish C. acrolepis, carp, and rabbit/human/chicken actins using molecular dynamics simulations at 0.1 and 60 MPa. The amino acid sequences of actins are highly conserved across a variety of species. The actins from C. armatus and C. yaquinae have the specific substitutions Q137K/V54A and Q137K/L67P, respectively, relative to C. acrolepis, and are pressure tolerant to depths of at least 6000 m. At high pressure, we observed significant changes in the salt bridge patterns in deep-sea fish actins, and these changes are expected to stabilize ATP binding and subdomain arrangement. Salt bridges between ATP and K137, formed in deep-sea fish actins, are expected to stabilize ATP binding even at high pressure. At high pressure, deep-sea fish actins also formed a greater total number of salt bridges than non-deep-sea fish actins owing to the formation of inter-helix/strand and inter-subdomain salt bridges. Free energy analysis suggests that deep-sea fish actins are stabilized to a greater degree by the conformational energy decrease associated with pressure effect.

Adaptation and evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species

PubMed Central

Zhang, Yanjie; Sun, Jin; Chen, Chong; Watanabe, Hiromi K.; Feng, Dong; Zhang, Yu; Chiu, Jill M.Y.; Qian, Pei-Yuan; Qiu, Jian-Wen

2017-01-01

Polynoid scale worms (Polynoidae, Annelida) invaded deep-sea chemosynthesis-based ecosystems approximately 60 million years ago, but little is known about their genetic adaptation to the extreme deep-sea environment. In this study, we reported the first two transcriptomes of deep-sea polynoids (Branchipolynoe pettiboneae, Lepidonotopodium sp.) and compared them with the transcriptome of a shallow-water polynoid (Harmothoe imbricata). We determined codon and amino acid usage, positive selected genes, highly expressed genes and putative duplicated genes. Transcriptome assembly produced 98,806 to 225,709 contigs in the three species. There were more positively charged amino acids (i.e., histidine and arginine) and less negatively charged amino acids (i.e., aspartic acid and glutamic acid) in the deep-sea species. There were 120 genes showing clear evidence of positive selection. Among the 10% most highly expressed genes, there were more hemoglobin genes with high expression levels in both deep-sea species. The duplicated genes related to DNA recombination and metabolism, and gene expression were only enriched in deep-sea species. Deep-sea scale worms adopted two strategies of adaptation to hypoxia in the chemosynthesis-based habitats (i.e., rapid evolution of tetra-domain hemoglobin in Branchipolynoe or high expression of single-domain hemoglobin in Lepidonotopodium sp.). PMID:28397791

Mechanism of Deep-Sea Fish α-Actin Pressure Tolerance Investigated by Molecular Dynamics Simulations

PubMed Central

Wakai, Nobuhiko; Takemura, Kazuhiro; Morita, Takami; Kitao, Akio

2014-01-01

The pressure tolerance of monomeric α-actin proteins from the deep-sea fish Coryphaenoides armatus and C. yaquinae was compared to that of non-deep-sea fish C. acrolepis, carp, and rabbit/human/chicken actins using molecular dynamics simulations at 0.1 and 60 MPa. The amino acid sequences of actins are highly conserved across a variety of species. The actins from C. armatus and C. yaquinae have the specific substitutions Q137K/V54A and Q137K/L67P, respectively, relative to C. acrolepis, and are pressure tolerant to depths of at least 6000 m. At high pressure, we observed significant changes in the salt bridge patterns in deep-sea fish actins, and these changes are expected to stabilize ATP binding and subdomain arrangement. Salt bridges between ATP and K137, formed in deep-sea fish actins, are expected to stabilize ATP binding even at high pressure. At high pressure, deep-sea fish actins also formed a greater total number of salt bridges than non-deep-sea fish actins owing to the formation of inter-helix/strand and inter-subdomain salt bridges. Free energy analysis suggests that deep-sea fish actins are stabilized to a greater degree by the conformational energy decrease associated with pressure effect. PMID:24465747

Survival of marine heterotrophic flagellates isolated from the surface and the deep sea at high hydrostatic pressure: Literature review and own experiments

NASA Astrophysics Data System (ADS)

Živaljić, Suzana; Schoenle, Alexandra; Nitsche, Frank; Hohlfeld, Manon; Piechocki, Julia; Reif, Farina; Shumo, Marwa; Weiss, Alexandra; Werner, Jennifer; Witt, Madeleine; Voss, Janine; Arndt, Hartmut

2018-02-01

Although the abyssal seafloor represents the most common benthic environment on Earth, eukaryotic microbial life at abyssal depths is still an uncharted territory. This is in striking contrast to their potential importance regarding the material flux and bacteria consumption in the deep sea. Flagellate genotypes determined from sedimentary DNA deep-sea samples might originate from vital deep-sea populations or from cysts of organisms sedimented down from surface waters. The latter one may have never been active under deep-sea conditions. We wanted to analyze the principal ability of cultivable heterotrophic flagellates of different phylogenetic groups (choanoflagellates, ancyromonads, euglenids, kinetoplastids, bicosoecids, chrysomonads, and cercozoans) to survive exposure to high hydrostatic pressure (up to 670 bar). We summarized our own studies and the few available data from literature on pressure tolerances of flagellates isolated from different marine habitats. Our results demonstrated that many different flagellate species isolated from the surface waters and deep-sea sediments survived drastic changes in hydrostatic pressure. Barophilic behavior was also recorded for several species isolated from the deep sea indicating their possible genetic adaptation to high pressures. This is in accordance with records of heterotrophic flagellates present in environmental DNA surveys based on clone libraries established for deep-sea environments.

Development and applications of an acoustic package for deep-sea sub-bottom profiling and detailed seafloor imaging

NASA Astrophysics Data System (ADS)

Nishimura, Kiyokazu; Kisimoto, Kiyoyuki; Joshima, Masato; Arai, Kohsaku

In the deep-sea geological survey, good survey results are difficult to obtain by a conventional surface-towed acoustic survey system, because the horizontal resolution is limited due to the long distance between the sensor and the target (seafloor). In order to improve the horizontal resolution, a deep-tow system, which tows the sensor in the vicinity of seafloor, is most practical, and many such systems have been developed and used until today. It is not easy, however, to carry out a high-density survey in a small area by maneuvering the towing body altitude sufficiently close to the seafloor with rugged topography. A ROV (Remotely Operated Vehicle) can be used to solve this problem. The ROV makes a high-density 2D survey feasible because of its maneuverability, although a long-distance survey is difficult with it. Accordingly, we have developed an acoustic survey system installed on a ROV. The system named DAIPACK (Deep-sea Acoustic Imaging Package) consists of (1) a deep-sea sub-bottom profiler and (2) a deep-sea sidescan sonar. (1) Deep-sea sub-bottom profiler A light-weight and compact sub-bottom profiler for shallow water was chosen to improve and repackage for the deep sea usage. The system is composed of three units; a transducer, an electronic unit and a notebook computer for system control and data acquisition. The source frequency is 10kHz. To convert the system for the deep sea, the transducer was exchanged for the deep sea model, and the electronic unit was improved accordingly. The electronic unit and the notebook computer were installed in a spherical pressure vessel. (2) Deep-sea sidescan sonar We remodeled a compact shallow sea sidescan sonar(water depth limitation is 30m ) into a deep sea one. This sidescan sonar is composed of a sonar towfish (transducers and an electronic unit ), a cable and a notebook computer (data processor). To accommodate in the deep water, the transducers were remodeled into a high pressure resistance type, and the electronic unit and the computer unit were stored in a spherical pressure vessel. The frequency output of the sidescan sonar is 330kHz, and the ranging distance is variable from 15m to 120m (one side).

Deep-Sea Bioluminescence Blooms after Dense Water Formation at the Ocean Surface

PubMed Central

Tamburini, Christian; Canals, Miquel; Durrieu de Madron, Xavier; Houpert, Loïc; Lefèvre, Dominique; Martini, Séverine; D'Ortenzio, Fabrizio; Robert, Anne; Testor, Pierre; Aguilar, Juan Antonio; Samarai, Imen Al; Albert, Arnaud; André, Michel; Anghinolfi, Marco; Anton, Gisela; Anvar, Shebli; Ardid, Miguel; Jesus, Ana Carolina Assis; Astraatmadja, Tri L.; Aubert, Jean-Jacques; Baret, Bruny; Basa, Stéphane; Bertin, Vincent; Biagi, Simone; Bigi, Armando; Bigongiari, Ciro; Bogazzi, Claudio; Bou-Cabo, Manuel; Bouhou, Boutayeb; Bouwhuis, Mieke C.; Brunner, Jurgen; Busto, José; Camarena, Francisco; Capone, Antonio; Cârloganu, Christina; Carminati, Giada; Carr, John; Cecchini, Stefano; Charif, Ziad; Charvis, Philippe; Chiarusi, Tommaso; Circella, Marco; Coniglione, Rosa; Costantini, Heide; Coyle, Paschal; Curtil, Christian; Decowski, Patrick; Dekeyser, Ivan; Deschamps, Anne; Donzaud, Corinne; Dornic, Damien; Dorosti, Hasankiadeh Q.; Drouhin, Doriane; Eberl, Thomas; Emanuele, Umberto; Ernenwein, Jean-Pierre; Escoffier, Stéphanie; Fermani, Paolo; Ferri, Marcelino; Flaminio, Vincenzo; Folger, Florian; Fritsch, Ulf; Fuda, Jean-Luc; Galatà, Salvatore; Gay, Pascal; Giacomelli, Giorgio; Giordano, Valentina; Gómez-González, Juan-Pablo; Graf, Kay; Guillard, Goulven; Halladjian, Garadeb; Hallewell, Gregory; van Haren, Hans; Hartman, Joris; Heijboer, Aart J.; Hello, Yann; Hernández-Rey, Juan Jose; Herold, Bjoern; Hößl, Jurgen; Hsu, Ching-Cheng; de Jong, Marteen; Kadler, Matthias; Kalekin, Oleg; Kappes, Alexander; Katz, Uli; Kavatsyuk, Oksana; Kooijman, Paul; Kopper, Claudio; Kouchner, Antoine; Kreykenbohm, Ingo; Kulikovskiy, Vladimir; Lahmann, Robert; Lamare, Patrick; Larosa, Giuseppina; Lattuada, Dario; Lim, Gordon; Presti, Domenico Lo; Loehner, Herbert; Loucatos, Sotiris; Mangano, Salvatore; Marcelin, Michel; Margiotta, Annarita; Martinez-Mora, Juan Antonio; Meli, Athina; Montaruli, Teresa; Motz, Holger; Neff, Max; Nezri, Emma nuel; Palioselitis, Dimitris; Păvălaş, Gabriela E.; Payet, Kevin; Payre, Patrice; Petrovic, Jelena; Piattelli, Paolo; Picot-Clemente, Nicolas; Popa, Vlad; Pradier, Thierry; Presani, Eleonora; Racca, Chantal; Reed, Corey; Riccobene, Giorgio; Richardt, Carsten; Richter, Roland; Rivière, Colas; Roensch, Kathrin; Rostovtsev, Andrei; Ruiz-Rivas, Joaquin; Rujoiu, Marius; Russo, Valerio G.; Salesa, Francisco; Sánchez-Losa, Augustin; Sapienza, Piera; Schöck, Friederike; Schuller, Jean-Pierre; Schussler, Fabian; Shanidze, Rezo; Simeone, Francesco; Spies, Andreas; Spurio, Maurizio; Steijger, Jos J. M.; Stolarczyk, Thierry; Taiuti, Mauro G. F.; Toscano, Simona; Vallage, Bertrand; Van Elewyck, Véronique; Vannoni, Giulia; Vecchi, Manuela; Vernin, Pascal; Wijnker, Guus; Wilms, Jorn; de Wolf, Els; Yepes, Harold; Zaborov, Dmitry; De Dios Zornoza, Juan; Zúñiga, Juan

2013-01-01

The deep ocean is the largest and least known ecosystem on Earth. It hosts numerous pelagic organisms, most of which are able to emit light. Here we present a unique data set consisting of a 2.5-year long record of light emission by deep-sea pelagic organisms, measured from December 2007 to June 2010 at the ANTARES underwater neutrino telescope in the deep NW Mediterranean Sea, jointly with synchronous hydrological records. This is the longest continuous time-series of deep-sea bioluminescence ever recorded. Our record reveals several weeks long, seasonal bioluminescence blooms with light intensity up to two orders of magnitude higher than background values, which correlate to changes in the properties of deep waters. Such changes are triggered by the winter cooling and evaporation experienced by the upper ocean layer in the Gulf of Lion that leads to the formation and subsequent sinking of dense water through a process known as “open-sea convection”. It episodically renews the deep water of the study area and conveys fresh organic matter that fuels the deep ecosystems. Luminous bacteria most likely are the main contributors to the observed deep-sea bioluminescence blooms. Our observations demonstrate a consistent and rapid connection between deep open-sea convection and bathypelagic biological activity, as expressed by bioluminescence. In a setting where dense water formation events are likely to decline under global warming scenarios enhancing ocean stratification, in situ observatories become essential as environmental sentinels for the monitoring and understanding of deep-sea ecosystem shifts. PMID:23874425

Organic and inorganic carbon dynamics in a karst aquifer: Santa Fe River Sink-Rise system, north Florida, USA

NASA Astrophysics Data System (ADS)

Jin, Jin; Zimmerman, Andrew R.; Moore, Paul J.; Martin, Jonathan B.

2014-03-01

Spatiotemporal variations in dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), major ions concentrations and other geochemical parameters including stable carbon isotopes of DIC (δ13CDIC), were measured in surface water and deep and shallow well water samples of the Santa Fe River Sink-Rise eogenetic karst system, north Florida, USA. Three end-member water sources were identified: one DOC-rich/DIC-poor/δ13CDIC-depleted, one DOC-poor/DIC-rich/δ13CDIC-enriched, and one enriched in major ions. Given their spatiotemporal distributions, they were presumed to represent soil water, upper aquifer groundwater, and deep aquifer water sources, respectively. Using assumed ratios of Na+, Cl, and SO42- for each end-member, a mixing model calculated the contribution of each water source to each sample. Then, chemical effects of biogeochemical reactions were calculated as the difference between those predicted by the mixing model and measured species concentrations. In general, carbonate mineral dissolution occurred throughout the Sink-Rise system, surface waters were net autotrophic and the subsurface was in metabolic balance, i.e., no net DOC or DIC production or consumption. However, there was evidence for chemolithoautotrophy, perhaps by hydrogen oxidizing microbes, at some deep aquifer sites. Mineralization of this autochthonous natural dissolved organic matter (NDOM) led to localized carbonate dissolution as did surface water-derived NDOM supplied to shallow well sites during the highest flow periods. This study demonstrates linkages between hydrology, abiotic and microbial processes and carbon dynamics and has important implications for groundwater quality, karst morphologic evolution, and hydrogeologic projects such as aquifer storage and recovery in karst systems.

Species-energy relationship in the deep sea: A test using the Quaternary fossil record

USGS Publications Warehouse

Hunt, G.; Cronin, T. M.; Roy, K.

2005-01-01

Little is known about the processes regulating species richness in deep-sea communities. Here we take advantage of natural experiments involving climate change to test whether predictions of the species-energy hypothesis hold in the deep sea. In addition, we test for the relationship between temperature and species richness predicted by a recent model based on biochemical kinetics of metabolism. Using the deep-sea fossil record of benthic foraminifera and statistical meta-analyses of temperature-richness and productivity-richness relationships in 10 deep-sea cores, we show that temperature but not productivity is a significant predictor of species richness over the past c. 130 000 years. Our results not only show that the temperature-richness relationship in the deep-sea is remarkably similar to that found in terrestrial and shallow marine habitats, but also that species richness tracks temperature change over geological time, at least on scales of c. 100 000 years. Thus, predicting biotic response to global climate change in the deep sea would require better understanding of how temperature regulates the occurrences and geographical ranges of species. ??2005 Blackwell Publishing Ltd/CNRS.

Temperature impacts on deep-sea biodiversity.

PubMed

Yasuhara, Moriaki; Danovaro, Roberto

2016-05-01

Temperature is considered to be a fundamental factor controlling biodiversity in marine ecosystems, but precisely what role temperature plays in modulating diversity is still not clear. The deep ocean, lacking light and in situ photosynthetic primary production, is an ideal model system to test the effects of temperature changes on biodiversity. Here we synthesize current knowledge on temperature-diversity relationships in the deep sea. Our results from both present and past deep-sea assemblages suggest that, when a wide range of deep-sea bottom-water temperatures is considered, a unimodal relationship exists between temperature and diversity (that may be right skewed). It is possible that temperature is important only when at relatively high and low levels but does not play a major role in the intermediate temperature range. Possible mechanisms explaining the temperature-biodiversity relationship include the physiological-tolerance hypothesis, the metabolic hypothesis, island biogeography theory, or some combination of these. The possible unimodal relationship discussed here may allow us to identify tipping points at which on-going global change and deep-water warming may increase or decrease deep-sea biodiversity. Predicted changes in deep-sea temperatures due to human-induced climate change may have more adverse consequences than expected considering the sensitivity of deep-sea ecosystems to temperature changes. © 2014 Cambridge Philosophical Society.

Comparison of CDOM EEMs Characteristics along F and PN section in Eastern China Sea: significance for sources tracing

NASA Astrophysics Data System (ADS)

Du, Yong; Zhang, Xiaoyu; Jiang, Binbin; Huang, Dasong; Yao, Lingling

2015-04-01

In this paper, a total of 28 water samples were collected mainly from three sections(C section in the Yangtze river inner estuary, PN section and F section on the spindle of Changjiang diluted water influenced by different hydrodynamic processes),which taken on two cruises in spring and summer of 2011. Absorption and fluorescence spectroscopy were measured along with dissolved organic carbon(DOC) concentrations and temperature, salinity and another environmental parameters to characterize the material sources and environmental implications of dissolved organic matter(DOM). Two protein-like components(tyrosine-like peak B and tryptophan-like peak T1), and two humic-like components(marine humic-like peak M and ultraviolet region humic-like peak A ) were identified by PARAFAC. We discussed CDOM distribution characteristic, material composition, and influence factors during the slowly dilution process of Changjiang diluted water into the east China sea by comparing the correlation of the CDOM absorption, fluorescence intensity, and fluorescence peak with DOC, in order to provide the based biogeochemistry theory basis for building DOC implications using CDOM fluorescence properties. The results revealed that:1) the Yangtze river and its inner estuary (upstream of the river mouth) were detected a higher amount of humic-like components. With the rapid dilution (or settlement) at the inner estuary, the humic-like components would further spread and dilute slowly on PN section and F section. On PN section, the terrigenous material is the main source material, and the main mechanism of CDOM distribution characteristics is controlled by dilution diffusion. Affected by the water mass convergence, marine dissolved organic matter in local waters had obvious input. However, due to the complexed hydrodynamic environment on F section, the input of terrigenous material has many ways. The influence of marine dissolved organic matter increased with the offshore distance increases.2) Although the absorption coefficient of DOC has good instruction significance, CDOM fluorescence intensity can more accurately express the amount of DOC in water than that of absorption coefficient with the source of dissolved organic matter enhanced.3) In general, CDOM fluorescence intensity and DOC show good linear relationship in the study region. But the correlation would change in different sea, and may ignore the rapidly dilution(or possibly sedimentation process) of estuarine waters, which need to be further depth study. Keywords: CDOM; F section; PN section; sources tracing; hydrodynamic environment

Vertical distribution of living ostracods in deep-sea sediments, North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Jöst, Anna B.; Yasuhara, Moriaki; Okahashi, Hisayo; Ostmann, Alexandra; Arbizu, Pedro Martínez; Brix, Saskia

2017-04-01

The depth distribution of living specimens of deep-sea benthic ostracods (small crustaceans with calcareous shells that are preserved as microfossils) in sediments is poorly understood, despite the importance of this aspect of basic ostracod biology for paleoecologic and paleoceanographic interpretations. Here, we investigated living benthic ostracod specimens from deep-sea multiple core samples, to reveal their depths distributions within sediment cores. The results showed shallow distribution and low population density of living deep-sea benthic ostracods (which are mostly composed of Podocopa). The living specimens are concentrated in the top 1 cm of the sediment, hence deep-sea benthic ostracods are either epifauna or shallow infauna. This observation is consistent with the information from shallow-water species. We also confirmed shallow infaunal (0.5-2 cm) and very shallow infaunal (0-1 cm) habitats of the deep-sea ostracod genera Krithe and Argilloecia, respectively.

Advances in deep-sea biology: biodiversity, ecosystem functioning and conservation. An introduction and overview

NASA Astrophysics Data System (ADS)

Cunha, Marina R.; Hilário, Ana; Santos, Ricardo S.

2017-03-01

Once considered as monotonous and devoid of life, the deep sea was revealed during the last century as an environment with a plethora of life forms and extremely high species richness (Rex and Etter, 2010). Underwater vehicle developments allowed direct observations of the deep, disclosing unique habitats and diverse seascapes, and other technological advances enabled manipulative experimentation and unprecedented prospects to pursue novel research topics (Levin and Sibuet, 2012; Danovaro et al., 2014). Alongside, the growing human population greatly increased the pressure on deep-sea ecosystems and the services they provide (Ramirez-Llodra et al., 2011; Thurber et al., 2014; Levin et al., 2016). Societal changes further intensified worldwide competition for natural resources, extending the present footprint of impacts over most of the global ocean (Halpern et al., 2008). In this socio-economic context, and in tandem with cutting edge technological advances and an unclear legal framework to regulate access to natural resources (Boyes and Elliott, 2014), the deep sea has emerged as a new opportunity for industrial exploitation and novel economic activities. The expanding use of the deep sea prompted a rapid reply from deep-sea scientists that recommended "a move from a frontier mentality of exploitation and single-sector management to a precautionary system that balances use of living marine resources, energy, and minerals from the deep ocean with maintenance of a productive and healthy marine environment, while improving knowledge and collaboration" and proposed "three directions to advance deep-ocean stewardship: i) protection and mitigation, ii) research, and iii) collaborative governance" (Mengerink et al., 2014). The European Marine Board position paper 22 (Rogers et al., 2015) further examined the key societal and environmental drivers confronting the deep sea and the role of deep-sea research to deliver future knowledge needs for science and society; a clear and consistent message from consultation with wider stakeholders was the need for fundamental knowledge of deep-sea ecosystems. Enhanced deep-sea knowledge is crucial to establish baselines and assess long term impact of human activity on ecosystems and it is also instrumental to inform environmental impact assessments, strategic management plans, effective decision making, environmental regulation and ocean governance (Rogers et al., 2015).

Species-specific physiological response by the cold-water corals Lophelia pertusa and Madrepora oculata to variations within their natural temperature range

NASA Astrophysics Data System (ADS)

Naumann, Malik S.; Orejas, Covadonga; Ferrier-Pagès, Christine

2014-01-01

The scleractinian cold-water corals (CWC) Lophelia pertusa and Madrepora oculata represent two major deep-sea reef-forming species that act as key ecosystem engineers over a wide temperature range, extending from the northern Atlantic (ca. 5-9 °C) to the Mediterranean Sea (ca. 11-13 °C). Recent research suggests that environmental parameters, such as food supply, settling substrate availability or aragonite saturation state may represent important precursors controlling habitat suitability for CWC. However, the effect of one principal environmental factor, temperature, on CWC key physiological processes is still unknown. In order to evaluate this effect on calcification, respiration, and dissolved organic carbon (DOC) net flux, colonies of Mediterranean L. pertusa and M. oculata were acclimated in aquaria to three temperatures (12, 9 and 6 °C), by consecutive decrements of 1 month duration. L. pertusa and M. oculata maintained at Mediterranean control conditions (i.e. 12 °C) displayed constant rates, on average respiring 4.8 and 4.0 μmol O2 cm-2 coral surface area d-1, calcifying 22.3 and 12.3 μmol CaCO3 g-1 skeletal dry weight d-1 and net releasing 2.6 and 3.1 μmol DOC cm-2 coral surface area d-1, respectively. Respiration of L. pertusa was not affected by lowered temperatures, while M. oculata respiration declined significantly (by 48%) when temperature decreased to 9 °C and 6 °C relative to controls. L. pertusa calcification at 9 °C was similar to controls, but decreased significantly (by 58%) at 6 °C. For M. oculata, calcification declined by 41% at 9 °C and by 69% at 6 °C. DOC net flux was similar throughout the experiment for both CWC. These findings reveal species-specific physiological responses by CWC within their natural temperature range. L. pertusa shows thermal acclimation in respiration and calcification, while these mechanisms appear largely absent in M. oculata. Conclusively, species-specific thermal acclimation may significantly affect the occurrence and local abundance of cosmopolitan CWC species, consequently influencing their important role in habitat engineering and ecosystem functioning in various thermal environments.

A Poor Relationship Between Sea Level and Deep-Water Sand Delivery

NASA Astrophysics Data System (ADS)

Harris, Ashley D.; Baumgardner, Sarah E.; Sun, Tao; Granjeon, Didier

2018-08-01

The most commonly cited control on delivery of sand to deep water is the rate of relative sea-level fall. The rapid rate of accommodation loss on the shelf causes sedimentation to shift basinward. Field and experimental numerical modeling studies have shown that deep-water sand delivery can occur during any stage of relative sea level position and across a large range of values of rate of relative sea-level change. However, these studies did not investigate the impact of sediment transport efficiency on the relationship between rate of relative sea-level change and deep-water sand delivery rate. We explore this relationship using a deterministic nonlinear diffusion-based numerical stratigraphic forward model. We vary across three orders of magnitude the diffusion coefficient value for marine settings, which controls sediment transport efficiency. We find that the rate of relative sea-level change can explain no more than 1% of the variability in deep-water sand delivery rates, regardless of sediment transport efficiency. Model results show a better correlation with relative sea level, with up to 55% of the variability in deep water sand delivery rates explained. The results presented here are consistent with studies of natural settings which suggest stochastic processes such as avulsion and slope failure, and interactions among such processes, may explain the remaining variance. Relative sea level is a better predictor of deep-water sand delivery than rate of relative sea-level change because it is the sea-level fall itself which promotes sand delivery, not the rate of the fall. We conclude that the poor relationship between sea level and sand delivery is not an artifact of the modeling parameters but is instead due to the inadequacy of relative sea level and the rate of relative sea-level change to fully describe the dimensional space in which depositional systems reside. Subsequently, sea level itself is unable to account for the interaction of multiple processes that contribute to sand delivery to deep water.

A Brief Review of Bioactive Metabolites Derived from Deep-Sea Fungi.

PubMed

Wang, Yan-Ting; Xue, Ya-Rong; Liu, Chang-Hong

2015-07-23

Deep-sea fungi, the fungi that inhabit the sea and the sediment at depths of over 1000 m below the surface, have become an important source of industrial, agricultural, and nutraceutical compounds based on their diversities in both structure and function. Since the first study of deep-sea fungi in the Atlantic Ocean at a depth of 4450 m was conducted approximately 50 years ago, hundreds of isolates of deep-sea fungi have been reported based on culture-dependent methods. To date more than 180 bioactive secondary metabolites derived from deep-sea fungi have been documented in the literature. These include compounds with anticancer, antimicrobial, antifungal, antiprotozoal, and antiviral activities. In this review, we summarize the structures and bioactivities of these metabolites to provide help for novel drug development.

A Brief Review of Bioactive Metabolites Derived from Deep-Sea Fungi

PubMed Central

Wang, Yan-Ting; Xue, Ya-Rong; Liu, Chang-Hong

2015-01-01

Deep-sea fungi, the fungi that inhabit the sea and the sediment at depths of over 1000 m below the surface, have become an important source of industrial, agricultural, and nutraceutical compounds based on their diversities in both structure and function. Since the first study of deep-sea fungi in the Atlantic Ocean at a depth of 4450 m was conducted approximately 50 years ago, hundreds of isolates of deep-sea fungi have been reported based on culture-dependent methods. To date more than 180 bioactive secondary metabolites derived from deep-sea fungi have been documented in the literature. These include compounds with anticancer, antimicrobial, antifungal, antiprotozoal, and antiviral activities. In this review, we summarize the structures and bioactivities of these metabolites to provide help for novel drug development. PMID:26213949

A Modeling Study of Deep Water Renewal in the Red Sea

NASA Astrophysics Data System (ADS)

Yao, F.; Hoteit, I.

2016-02-01

Deep water renewal processes in the Red Sea are examined in this study using a 50-year numerical simulation from 1952-2001. The deep water in the Red Sea below the thermocline ( 200 m) exhibits a near-uniform vertical structure in temperature and salinity, but geochemical tracer distributions, such as 14C and 3He, and dissolved oxygen concentrations indicate that the deep water is renewed on time scales as short as 36 years. The renewal process is accomplished through a deep overturning cell that consists of a southward bottom current and a northward returning current at depths of 400-600 m. Three sources regions are proposed for the formation of the deep water, including two deep outflows from the Gulfs of Aqaba and Suez and winter deep convections in the northern Red Sea. The MITgcm (MIT general circulation model), which has been used to simulate the shallow overturning circulations in the Red Sea, is configured in this study with increased resolutions in the deep water. During the 50 years of simulation, artificial passive tracers added in the model indicate that the deep water in the Red Sea was only episodically renewed during some anomalously cold years; two significant episodes of deep water renewal are reproduced in the winters of 1983 and 1992, in accordance with reported historical hydrographic observations. During these renewal events, deep convections reaching the bottom of the basin occurred, which further facilitated deep sinking of the outflows from the Gulfs of Aqaba and Suez. Ensuing spreading of the newly formed deep water along the bottom caused upward displacements of thermocline, which may have profound effects on the water exchanges in the Strait of Bab el Mandeb between the Red Sea and the Gulf of Aden and the functioning of the ecosystem in the Red Sea by changing the vertical distributions of nutrients.

Deep Sea Actinomycetes and Their Secondary Metabolites

PubMed Central

Kamjam, Manita; Sivalingam, Periyasamy; Deng, Zinxin; Hong, Kui

2017-01-01

Deep sea is a unique and extreme environment. It is a hot spot for hunting marine actinomycetes resources and secondary metabolites. The novel deep sea actinomycete species reported from 2006 to 2016 including 21 species under 13 genera with the maximum number from Microbacterium, followed by Dermacoccus, Streptomyces and Verrucosispora, and one novel species for the other 9 genera. Eight genera of actinomycetes were reported to produce secondary metabolites, among which Streptomyces is the richest producer. Most of the compounds produced by the deep sea actinomycetes presented antimicrobial and anti-cancer cell activities. Gene clusters related to biosynthesis of desotamide, heronamide, and lobophorin have been identified from the deep sea derived Streptomyces. PMID:28507537

Zooplankton diel vertical migration and contribution to deep active carbon flux in the NW Mediterranean

NASA Astrophysics Data System (ADS)

Isla, Alejandro; Scharek, Renate; Latasa, Mikel

2015-03-01

The diel vertical migration (DVM) of zooplankton contributes to the biological pump transporting material from surface to deep waters. We examined the DVM of the zooplankton community in different size fractions (53-200 μm, 200-500 μm, 500-1000 μm, 1000-2000 μm and > 2000 μm) during three cruises carried out in the open NW Mediterranean Sea. We assessed their metabolic rates from empirical published relationships and estimated the active fluxes of dissolved carbon to the mesopelagic zone driven by migrant zooplankton. Within the predominantly oligotrophic Mediterranean Sea, the NW region is one of the most productive ones, with a seasonal cycle characterized by a prominent spring bloom. The study area was visited at three different phases of the seasonal cycle: during the spring bloom, the post-bloom, and strongly stratified oligotrophic conditions. We found seasonal differences in DVM, less evident during the bloom. Changes in DVM intensity were related to the composition of the zooplanktonic assemblage, which also varied between cruises. Euphausiids appeared as the most active migrants in all seasons, and their life cycle conditioned the observed pattern. Immature stages, which are unable to perform large diel vertical movements, dominated during the bloom, in contrast to the higher relative importance of migrating adults in the other two sampling periods. The amount of dissolved carbon exported was determined by the migrant zooplankton biomass, being highest during the post-bloom (2.2 mmol C respired m- 2 d- 1, and up to 3.1 mmol C exported m- 2 d- 1 when DOC release estimations are added). The active transport by diel migrants represented a substantial contribution to total carbon export to deep waters, especially under stratified oligotrophic conditions, revealing the importance of zooplankton in the biological pump operating in the study area.

The biomass of the deep-sea benthopelagic plankton

NASA Astrophysics Data System (ADS)

Wishner, K. F.

1980-04-01

Deep-sea benthopelagic plankton samples were collected with a specially designed opening-closing net system 10 to 100 m above the bottom in five different oceanic regions at depths from 1000 to 4700 m. Benthopelagic plankton biomasses decrease exponentially with depth. At 1000 m the biomass is about 1% that of the surface zooplankton, at 5000 m about 0.1%. Effects of differences in surface primary productivity on deep-sea plankton biomass are much less than the effect of depth and are detectable only in a few comparisons of extreme oceanic regions. The biomass at 10 m above the bottom is greater than that at 100 m above the bottom (in a three-sample comparison), which could be a consequence of an enriched near-bottom environment. The deep-sea plankton biomass in the Red Sea is anomalously low. This may be due to increased decomposition rates in the warm (22°C) deep Red Sea water, which prevent much detritus from reaching the deep sea. A model of organic carbon utilization in the benthic boundary layer (bottom 100 m), incorporating results from deep-sea sediment trap and respiration studies, indicates that the benthopelagic plankton use only a small amount of the organic carbon flux. A large fraction of the flux is unaccounted for by present estimates of benthic and benthopelagic respiration.

Challenging Oil Bioremediation at Deep-Sea Hydrostatic Pressure

PubMed Central

Scoma, Alberto; Yakimov, Michail M.; Boon, Nico

2016-01-01

The Deepwater Horizon accident has brought oil contamination of deep-sea environments to worldwide attention. The risk for new deep-sea spills is not expected to decrease in the future, as political pressure mounts to access deep-water fossil reserves, and poorly tested technologies are used to access oil. This also applies to the response to oil-contamination events, with bioremediation the only (bio)technology presently available to combat deep-sea spills. Many questions about the fate of petroleum-hydrocarbons within deep-sea environments remain unanswered, as well as the main constraints limiting bioremediation under increased hydrostatic pressures and low temperatures. The microbial pathways fueling oil bioassimilation are unclear, and the mild upregulation observed for beta-oxidation-related genes in both water and sediments contrasts with the high amount of alkanes present in the spilled oil. The fate of solid alkanes (tar), hydrocarbon degradation rates and the reason why the most predominant hydrocarbonoclastic genera were not enriched at deep-sea despite being present at hydrocarbon seeps at the Gulf of Mexico have been largely overlooked. This mini-review aims at highlighting the missing information in the field, proposing a holistic approach where in situ and ex situ studies are integrated to reveal the principal mechanisms accounting for deep-sea oil bioremediation. PMID:27536290

A comparative experimental approach to ecotoxicology in shallow-water and deep-sea holothurians suggests similar behavioural responses.

PubMed

Brown, Alastair; Wright, Roseanna; Mevenkamp, Lisa; Hauton, Chris

2017-10-01

Exploration of deep-sea mineral resources is burgeoning, raising concerns regarding ecotoxicological impacts on deep-sea fauna. Assessing toxicity in deep-sea species is technologically challenging, which promotes interest in establishing shallow-water ecotoxicological proxy species. However, the effects of temperature and hydrostatic pressure on toxicity, and how adaptation to deep-sea environmental conditions might moderate these effects, are unknown. To address these uncertainties we assessed behavioural and physiological (antioxidant enzyme activity) responses to exposure to copper-spiked artificial sediments in a laboratory experiment using a shallow-water holothurian (Holothuria forskali), and in an in situ experiment using a deep-sea holothurian (Amperima sp.). Both species demonstrated sustained avoidance behaviour, evading contact with contaminated artificial sediment. However, A. sp. demonstrated sustained avoidance of 5mgl -1 copper-contaminated artificial sediment whereas H. forskali demonstrated only temporary avoidance of 5mgl -1 copper-contaminated artificial sediment, suggesting that H. forskali may be more tolerant of metal exposure over 96h. Nonetheless, the acute behavioural response appears consistent between the shallow-water species and the deep-sea species, suggesting that H. forskali may be a suitable ecotoxicological proxy for A. sp. in acute (≤24h) exposures, which may be representative of deep-sea mining impacts. No antioxidant response was observed in either species, which was interpreted to be the consequence of avoiding copper exposure. Although these data suggest that shallow-water taxa may be suitable ecotoxicological proxies for deep-sea taxa, differences in methodological and analytical approaches, and in sex and reproductive stage of experimental subjects, require caution in assessing the suitability of H. forskali as an ecotoxicological proxy for A. sp. Nonetheless, avoidance behaviour may have bioenergetic consequences that affect growth and/or reproductive output, potentially impacting fecundity and/or offspring fitness, and thus influencing source-sink dynamics and persistence of wider deep-sea populations. Copyright © 2017 Elsevier B.V. All rights reserved.

Offshore Floating Wind Turbine-driven Deep Sea Water Pumping for Combined Electrical Power and District Cooling

NASA Astrophysics Data System (ADS)

Sant, T.; Buhagiar, D.; Farrugia, R. N.

2014-06-01

A new concept utilising floating wind turbines to exploit the low temperatures of deep sea water for space cooling in buildings is presented. The approach is based on offshore hydraulic wind turbines pumping pressurised deep sea water to a centralised plant consisting of a hydro-electric power system coupled to a large-scale sea water-cooled air conditioning (AC) unit of an urban district cooling network. In order to investigate the potential advantages of this new concept over conventional technologies, a simplified model for performance simulation of a vapour compression AC unit was applied independently to three different systems, with the AC unit operating with (1) a constant flow of sea surface water, (2) a constant flow of sea water consisting of a mixture of surface sea water and deep sea water delivered by a single offshore hydraulic wind turbine and (3) an intermittent flow of deep sea water pumped by a single offshore hydraulic wind turbine. The analysis was based on one year of wind and ambient temperature data for the Central Mediterranean that is known for its deep waters, warm climate and relatively low wind speeds. The study confirmed that while the present concept is less efficient than conventional turbines utilising grid-connected electrical generators, a significant portion of the losses associated with the hydraulic transmission through the pipeline are offset by the extraction of cool deep sea water which reduces the electricity consumption of urban air-conditioning units.

Potential impact of global climate change on benthic deep-sea microbes.

PubMed

Danovaro, Roberto; Corinaldesi, Cinzia; Dell'Anno, Antonio; Rastelli, Eugenio

2017-12-15

Benthic deep-sea environments are the largest ecosystem on Earth, covering ∼65% of the Earth surface. Microbes inhabiting this huge biome at all water depths represent the most abundant biological components and a relevant portion of the biomass of the biosphere, and play a crucial role in global biogeochemical cycles. Increasing evidence suggests that global climate changes are affecting also deep-sea ecosystems, both directly (causing shifts in bottom-water temperature, oxygen concentration and pH) and indirectly (through changes in surface oceans' productivity and in the consequent export of organic matter to the seafloor). However, the responses of the benthic deep-sea biota to such shifts remain largely unknown. This applies particularly to deep-sea microbes, which include bacteria, archaea, microeukaryotes and their viruses. Understanding the potential impacts of global change on the benthic deep-sea microbial assemblages and the consequences on the functioning of the ocean interior is a priority to better forecast the potential consequences at global scale. Here we explore the potential changes in the benthic deep-sea microbiology expected in the coming decades using case studies on specific systems used as test models. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean.

PubMed

Romera-Castillo, Cristina; Pinto, Maria; Langer, Teresa M; Álvarez-Salgado, Xosé Antón; Herndl, Gerhard J

2018-04-12

Approximately 5.25 trillion plastic pieces are floating at the sea surface. The impact of plastic pollution on the lowest trophic levels of the food web, however, remains unknown. Here we show that plastics release dissolved organic carbon (DOC) into the ambient seawater stimulating the activity of heterotrophic microbes. Our estimates indicate that globally up to 23,600 metric tons of DOC are leaching from marine plastics annually. About 60% of it is available to microbial utilization in less than 5 days. If exposed to solar radiation, however, this DOC becomes less labile. Thus, plastic pollution of marine surface waters likely alters the composition and activity of the base of the marine food webs. It is predicted that plastic waste entering the ocean will increase by a factor of ten within the next decade, resulting in an increase in plastic-derived DOC that might have unaccounted consequences for marine microbes and for the ocean system.

Deep-sea coral research and technology program: Alaska deep-sea coral and sponge initiative final report

USGS Publications Warehouse

Rooper, Chris; Stone, Robert P.; Etnoyer, Peter; Conrath, Christina; Reynolds, Jennifer; Greene, H. Gary; Williams, Branwen; Salgado, Enrique; Morrison, Cheryl L.; Waller, Rhian G.; Demopoulos, Amanda W.J.

2017-01-01

Deep-sea coral and sponge ecosystems are widespread throughout most of Alaska’s marine waters. In some places, such as the central and western Aleutian Islands, deep-sea coral and sponge resources can be extremely diverse and may rank among the most abundant deep-sea coral and sponge communities in the world. Many different species of fishes and invertebrates are associated with deep-sea coral and sponge communities in Alaska. Because of their biology, these benthic invertebrates are potentially impacted by climate change and ocean acidification. Deepsea coral and sponge ecosystems are also vulnerable to the effects of commercial fishing activities. Because of the size and scope of Alaska’s continental shelf and slope, the vast majority of the area has not been visually surveyed for deep-sea corals and sponges. NOAA’s Deep Sea Coral Research and Technology Program (DSCRTP) sponsored a field research program in the Alaska region between 2012–2015, referred to hereafter as the Alaska Initiative. The priorities for Alaska were derived from ongoing data needs and objectives identified by the DSCRTP, the North Pacific Fishery Management Council (NPFMC), and Essential Fish Habitat-Environmental Impact Statement (EFH-EIS) process.This report presents the results of 15 projects conducted using DSCRTP funds from 2012-2015. Three of the projects conducted as part of the Alaska deep-sea coral and sponge initiative included dedicated at-sea cruises and fieldwork spread across multiple years. These projects were the eastern Gulf of Alaska Primnoa pacifica study, the Aleutian Islands mapping study, and the Gulf of Alaska fish productivity study. In all, there were nine separate research cruises carried out with a total of 109 at-sea days conducting research. The remaining projects either used data and samples collected by the three major fieldwork projects or were piggy-backed onto existing research programs at the Alaska Fisheries Science Center (AFSC).

Dining in the Deep: The Feeding Ecology of Deep-Sea Fishes

NASA Astrophysics Data System (ADS)

Drazen, Jeffrey C.; Sutton, Tracey T.

2017-01-01

Deep-sea fishes inhabit ˜75% of the biosphere and are a critical part of deep-sea food webs. Diet analysis and more recent trophic biomarker approaches, such as stable isotopes and fatty-acid profiles, have enabled the description of feeding guilds and an increased recognition of the vertical connectivity in food webs in a whole-water-column sense, including benthic-pelagic coupling. Ecosystem modeling requires data on feeding rates; the available estimates indicate that deep-sea fishes have lower per-individual feeding rates than coastal and epipelagic fishes, but the overall predation impact may be high. A limited number of studies have measured the vertical flux of carbon by mesopelagic fishes, which appears to be substantial. Anthropogenic activities are altering deep-sea ecosystems and their services, which are mediated by trophic interactions. We also summarize outstanding data gaps.

De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish.

PubMed

Lan, Yi; Sun, Jin; Xu, Ting; Chen, Chong; Tian, Renmao; Qiu, Jian-Wen; Qian, Pei-Yuan

2018-05-24

High hydrostatic pressure and low temperatures make the deep sea a harsh environment for life forms. Actin organization and microtubules assembly, which are essential for intracellular transport and cell motility, can be disrupted by high hydrostatic pressure. High hydrostatic pressure can also damage DNA. Nucleic acids exposed to low temperatures can form secondary structures that hinder genetic information processing. To study how deep-sea creatures adapt to such a hostile environment, one of the most straightforward ways is to sequence and compare their genes with those of their shallow-water relatives. We captured an individual of the fish species Aldrovandia affinis, which is a typical deep-sea inhabitant, from the Okinawa Trough at a depth of 1550 m using a remotely operated vehicle (ROV). We sequenced its transcriptome and analyzed its molecular adaptation. We obtained 27,633 protein coding sequences using an Illumina platform and compared them with those of several shallow-water fish species. Analysis of 4918 single-copy orthologs identified 138 positively selected genes in A. affinis, including genes involved in microtubule regulation. Particularly, functional domains related to cold shock as well as DNA repair are exposed to positive selection pressure in both deep-sea fish and hadal amphipod. Overall, we have identified a set of positively selected genes related to cytoskeleton structures, DNA repair and genetic information processing, which shed light on molecular adaptation to the deep sea. These results suggest that amino acid substitutions of these positively selected genes may contribute crucially to the adaptation of deep-sea animals. Additionally, we provide a high-quality transcriptome of a deep-sea fish for future deep-sea studies.

Endolithic Boring Enhance the Deep-sea Carbonate Lithification on the Southwest Indian Ridge

NASA Astrophysics Data System (ADS)

Peng, X.; Xu, H.

2017-12-01

Deep-sea carbonates represent an important type of sedimentary rock due to their effect on the composition of upper oceanic crust and their contribution to deep-sea geochemical cycles. However, the lithification of deep-sea carbonates at the seafloor has remained a mystery for many years. A large lithified carbonate area, characterized by thriving benthic faunas and tremendous amount of endolithic borings, was discovered in 2008, blanketed on the seafloor of ultraslow spreading Southwest Indian Ridge (SWIR). Macrofaunal inhabitants including echinoids, polychaetes, gastropods as well as crustaceans, are abundant in the sample. The most readily apparent feature of the sample is the localized enhancement of density around the borings. The boring features of these carbonate rocks and factors that may enhance deep-sea carbonate lithification are reported. The δ13CPDB values of 46 bulk samples are -0.37 to 1.86‰, while these samples have a relatively narrow δ18OPDB range of 1.35 to 3.79‰. The bulk δ13CPDB values of chalk and gray excrements are positively correlated with bulk δ18OPDB values (r = 0.91) (Fig. 8), which reflects that endolithic boring is possibly a critical factor influence the lithification. We suggest that active boring may trigger the dissolution of the original calcite and thus accelerate deep-sea carbonate lithification on mid-ocean ridges. Our study reports an unfamiliar phenomenon of non-burial carbonate lithification and interested by the observation that it is often associated with boring feature. These carbonate rocks may provide a novel mechanism for deep-sea carbonate lithification at the deep-sea seafloor and also illuminate the geological and biological importance of deep-sea carbonate rocks on mid-ocean ridges.

The unique deep sea-land connection: interactive 3D visualization and molecular phylogeny of Bathyhedyle boucheti n. sp. (Bathyhedylidae n. fam.)-the first panpulmonate slug from bathyal zones.

PubMed

Neusser, Timea P; Jörger, Katharina M; Lodde-Bensch, Eva; Strong, Ellen E; Schrödl, Michael

2016-01-01

The deep sea comprises vast unexplored areas and is expected to conceal significant undescribed invertebrate species diversity. Deep waters may act as a refuge for many relictual groups, including elusive and enigmatic higher taxa, but the evolutionary pathways by which colonization of the deep sea has occurred have scarcely been investigated. Sister group relationships between shallow water and deep sea taxa have been documented in several invertebrate groups, but are unknown between amphibious/terrestrial and deep-sea species. Here we describe in full and interactive 3D morphoanatomical detail the new sea slug species Bathyhedyle boucheti n. sp., dredged from the continental slope off Mozambique. Molecular and morphological analyses reveal that it represents a novel heterobranch gastropod lineage which we establish as the new family Bathyhedylidae. The family is robustly supported as sister to the recently discovered panpulmonate acochlidian family Aitengidae, which comprises amphibious species living along the sea shore as well as fully terrestrial species. This is the first marine-epibenthic representative among hedylopsacean Acochlidiida, the first record of an acochlidian from deep waters and the first documented panpulmonate deep-sea slug. Considering a marine mesopsammic ancestor, the external morphological features of Bathyhedyle n. gen. may be interpreted as independent adaptations to a benthic life style in the deep sea, including the large body size, broad foot and propodial tentacles. Alternatively, the common ancestor of Bathyhedylidae and Aitengidae may have been a macroscopic amphibious or even terrestrial species. We hypothesize that oophagy in the common ancestor of Aitengidae and Bathyhedylidae might explain the impressive ecological and evolutionary flexibility in habitat choice in the Acochlidiida.

Characterizing Groundwater Sources of Organic Matter to Arctic Coastal Waters

NASA Astrophysics Data System (ADS)

Connolly, C. T.; Spencer, R. G.; Cardenas, M. B.; Bennett, P. C.; McNichol, A. P.; McClelland, J. W.

2016-12-01

The Arctic is projected to transition from a runoff-dominated system to a groundwater-dominated system as permafrost thaws due to climate change. This fundamental shift in hydrology is expected to increase groundwater flow to Arctic coastal waters, which may be a significant source of dissolved organic matter (DOM) to these waters—even under present conditions—that has been largely overlooked. Here we quantify and elucidate sources of groundwater DOM inputs to lagoons along the eastern Alaskan Beaufort Sea coast using an approach that combines concentration measurements and radiocarbon dating of groundwater, soil profiles, and soil leachable dissolved organic carbon (DOC). Samples were collected in late summer, when soil thaw depths (active layer) were near their maximum extent. As anticipated, the radiocarbon age of bulk soil organic matter increased with depth (modern - 6,100 yBP), while the amount of extractable DOC decreased with depth within the active layer. However, amounts of extractable DOC increased dramatically in thawed permafrost samples collected directly below the actively layer. Concentrations of DOM in groundwater (ranging from 902 to 5,118 μmolL-1 DOC) are one to two orders of magnitude higher than those measured in lagoons and nearby river water. In contrast, the 14C-DOC ages of groundwater (1,400 ± 718 s.d. yBP), lagoon water (1,750 yBP), and river water (1,610 yBP) are comparable. Together these results suggest that: (1) groundwater provides a highly concentrated input of old DOC to Arctic coastal waters; (2) groundwater DOM is likely sourced from organic matter spanning the entire soil profile; and (3) the DOM in rivers along the eastern Alaskan Beaufort Sea coast during late summer is strongly influenced by groundwater sources, but is much lower in concentration due to photo-mineralization and/or biological consumption. These results are key for assessing how changes in land-ocean export of organic matter as permafrost thaws will change into the future with clear ramifications for Arctic coastal environments.

76 FR 60379 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab; Amendment 3

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-29

.... 100903433-1531-02] RIN 0648-BA22 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab... approved in Amendment 3 to the Atlantic Deep-Sea Red Crab Fishery Management Plan (FMP). The New England... range and/or witness the at-sea retrieval of the traps to determine compliance. 2. Prohibition on...

Deep-sea Hexactinellida (Porifera) of the Weddell Sea

NASA Astrophysics Data System (ADS)

Janussen, Dorte; Tabachnick, Konstantin R.; Tendal, Ole S.

2004-07-01

New Hexactinellida from the deep Weddel Sea are described. This moderately diverse hexactinellid fauna includes 14 species belonging to 12 genera, of which five species and one subgenus are new to science: Periphragella antarctica n. sp., Holascus pseudostellatus n. sp., Caulophacus (Caulophacus) discohexactinus n. sp., C. ( Caulodiscus) brandti n. sp., C. ( Oxydiscus) weddelli n. sp., and C. ( Oxydiscus) n. subgen. So far, 20 hexactinellid species have been reported from the deep Weddell Sea, 15 are known from the northern part and 10 only from here, while 10 came from the southern area, and five of these only from there. However, this apparent high "endemism" of Antarctic hexactinellid sponges is most likely the result of severe undersampling of the deep-sea fauna. We find no reason to believe that a division between an oceanic and a more continental group of species exists. The current poor database indicates that a substantial part of the deep hexactinellid fauna of the Weddell Sea is shared with other deep-sea regions, but it does not indicate a special biogeographic relationship with any other ocean.

Dissolved organic matter properties in arctic coastal waters are strongly influenced by degrading permafrost coasts and by local meteorology.

NASA Astrophysics Data System (ADS)

Fritz, M.; Tanski, G.; Goncalves-Araujo, R.; Heim, B.; Koch, B.; Lantuit, H.

2016-12-01

Organic carbon and nutrients are increasingly mobilized from permafrost coasts due to accelerated coastal erosion in response to Arctic warming. The nearshore zone plays a crucial role in Arctic biogeochemical cycling, as here the released material is destined to be (1) mineralized into greenhouse gases, (2) incorporated into marine primary production, (3) buried in nearshore sediments or (4) transported offshore. We present dissolved organic matter (DOM) quantities in surface water in the nearshore zone of the southern Beaufort Sea from three consecutive summer seasons under different meteorological conditions. Colored and fluorescent dissolved organic matter (cDOM, fDOM) properties are used to differentiate the terrestrial from the marine DOM component. Dissolved organic carbon (DOC) concentrations in the nearshore zone of the southern Beaufort Sea vary between about 1.5 and 5 mg C L-1. In low salinity conditions between 8 and 15, high DOC concentrations of 3.5 to 5 mg C L-1prevail. Storm events can lead to strongly decreased DOC concentration and increasing salinity (14 to 28) in surface water, probably due to upwelling. In windy and wavy conditions throughout the season, the water column is well-mixed and DOC-poor because saline waters are transported from the offshore to the nearshore. We recognized a significant negative correlation between DOC and salinity, independent from varying meteorological conditions. This suggests conservative mixing between DOC derived from permafrost coasts and marine primary production. Stable stratification in the nearshore zone and calm weather conditions will increase the influence of terrestrial-derived DOM and the potential turnover time for biogeochemical cycling in coastal ecosystems. The strength of the terrestrial influence can be estimated by salinity and stable water isotope measures as they directly correlate with DOC concentrations; the lower the salinity the stronger the terrestrial influence. We conclude that the terrestrial footprint of coastal erosion on DOM concentrations in the nearshore zone is significant and may increase with future climate warming. Meteorological conditions play a major role for the strength of the terrestrial DOM signal, which can vary on short timescales.

Efficient removal of recalcitrant deep-ocean dissolved organic matter during hydrothermal circulation

NASA Astrophysics Data System (ADS)

Hawkes, Jeffrey A.; Rossel, Pamela E.; Stubbins, Aron; Butterfield, David; Connelly, Douglas P.; Achterberg, Eric P.; Koschinsky, Andrea; Chavagnac, Valérie; Hansen, Christian T.; Bach, Wolfgang; Dittmar, Thorsten

2015-11-01

Oceanic dissolved organic carbon (DOC) is an important carbon pool, similar in magnitude to atmospheric CO2, but the fate of its oldest forms is not well understood. Hot hydrothermal circulation may facilitate the degradation of otherwise un-reactive dissolved organic matter, playing an important role in the long-term global carbon cycle. The oldest, most recalcitrant forms of DOC, which make up most of oceanic DOC, can be recovered by solid-phase extraction. Here we present measurements of solid-phase extractable DOC from samples collected between 2009 and 2013 at seven vent sites in the Atlantic, Pacific and Southern oceans, along with magnesium concentrations, a conservative tracer of water circulation through hydrothermal systems. We find that magnesium and solid-phase extractable DOC concentrations are correlated, suggesting that solid-phase extractable DOC is almost entirely lost from solution through mineralization or deposition during circulation through hydrothermal vents with fluid temperatures of 212-401 °C. In laboratory experiments, where we heated samples to 380 °C for four days, we found a similar removal efficiency. We conclude that thermal degradation alone can account for the loss of solid-phase extractable DOC in natural hydrothermal systems, and that its maximum lifetime is constrained by the timescale of hydrothermal cycling, at about 40 million years.

Coral communities as indicators of ecosystem-level impacts of the Deepwater Horizon spill

USGS Publications Warehouse

Fisher, Charles R.; Demopoulos, Amanda W.J.; Cordes, Erik E.; Baums, Iliana B.; White, Helen K.; Bourque, Jill R.

2014-01-01

The Macondo oil spill released massive quantities of oil and gas from a depth of 1500 meters. Although a buoyant plume carried released hydrocarbons to the sea surface, as much as half stayed in the water column and much of that in the deep sea. After the hydrocarbons reached the surface, weathering processes, burning, and the use of a dispersant caused hydrocarbon-rich marine snow to sink into the deep sea. As a result, this spill had a greater potential to affect deep-sea communities than had any previous spill. Here, we review the literature on impacts on deep-sea communities from the Macondo blowout and provide additional data on sediment hydrocarbon loads and the impacts on sediment infauna in areas with coral communities around the Macondo well. We review the literature on the genetic connectivity of deep-sea species in the Gulf of Mexico and discuss the potential for wider effects on deep Gulf coral communities.

From Offshore to Onshore: Multiple Origins of Shallow-Water Corals from Deep-Sea Ancestors

PubMed Central

Lindner, Alberto; Cairns, Stephen D.; Cunningham, Clifford W.

2008-01-01

Shallow-water tropical reefs and the deep sea represent the two most diverse marine environments. Understanding the origin and diversification of this biodiversity is a major quest in ecology and evolution. The most prominent and well-supported explanation, articulated since the first explorations of the deep sea, holds that benthic marine fauna originated in shallow, onshore environments, and diversified into deeper waters. In contrast, evidence that groups of marine organisms originated in the deep sea is limited, and the possibility that deep-water taxa have contributed to the formation of shallow-water communities remains untested with phylogenetic methods. Here we show that stylasterid corals (Cnidaria: Hydrozoa: Stylasteridae)—the second most diverse group of hard corals—originated and diversified extensively in the deep sea, and subsequently invaded shallow waters. Our phylogenetic results show that deep-water stylasterid corals have invaded the shallow-water tropics three times, with one additional invasion of the shallow-water temperate zone. Our results also show that anti-predatory innovations arose in the deep sea, but were not involved in the shallow-water invasions. These findings are the first robust evidence that an important group of tropical shallow-water marine animals evolved from deep-water ancestors. PMID:18560569

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida)

PubMed Central

2010-01-01

Background Nematodes represent the most abundant benthic metazoa in one of the largest habitats on earth, the deep sea. Characterizing major patterns of biodiversity within this dominant group is a critical step towards understanding evolutionary patterns across this vast ecosystem. The present study has aimed to place deep-sea nematode species into a phylogenetic framework, investigate relationships between shallow water and deep-sea taxa, and elucidate phylogeographic patterns amongst the deep-sea fauna. Results Molecular data (18 S and 28 S rRNA) confirms a high diversity amongst deep-sea Enoplids. There is no evidence for endemic deep-sea lineages in Maximum Likelihood or Bayesian phylogenies, and Enoplids do not cluster according to depth or geographic location. Tree topologies suggest frequent interchanges between deep-sea and shallow water habitats, as well as a mixture of early radiations and more recently derived lineages amongst deep-sea taxa. This study also provides convincing evidence of cosmopolitan marine species, recovering a subset of Oncholaimid nematodes with identical gene sequences (18 S, 28 S and cox1) at trans-Atlantic sample sites. Conclusions The complex clade structures recovered within the Enoplida support a high global species richness for marine nematodes, with phylogeographic patterns suggesting the existence of closely related, globally distributed species complexes in the deep sea. True cosmopolitan species may additionally exist within this group, potentially driven by specific life history traits of Enoplids. Although this investigation aimed to intensively sample nematodes from the order Enoplida, specimens were only identified down to genus (at best) and our sampling regime focused on an infinitesimal small fraction of the deep-sea floor. Future nematode studies should incorporate an extended sample set covering a wide depth range (shelf, bathyal, and abyssal sites), utilize additional genetic loci (e.g. mtDNA) that are informative at the species level, and apply high-throughput sequencing methods to fully assay community diversity. Finally, further molecular studies are needed to determine whether phylogeographic patterns observed in Enoplids are common across other ubiquitous marine groups (e.g. Chromadorida, Monhysterida). PMID:21167065

Carbon geochemistry of plankton-dominated samples in the Laptev and East Siberian shelves: contrasts in suspended particle composition

NASA Astrophysics Data System (ADS)

Tesi, Tommaso; Geibel, Marc C.; Pearce, Christof; Panova, Elena; Vonk, Jorien E.; Karlsson, Emma; Salvado, Joan A.; Kruså, Martin; Bröder, Lisa; Humborg, Christoph; Semiletov, Igor; Gustafsson, Örjan

2017-09-01

Recent Arctic studies suggest that sea ice decline and permafrost thawing will affect phytoplankton dynamics and stimulate heterotrophic communities. However, in what way the plankton composition will change as the warming proceeds remains elusive. Here we investigate the chemical signature of the plankton-dominated fraction of particulate organic matter (POM) collected along the Siberian Shelf. POM (> 10 µm) samples were analysed using molecular biomarkers (CuO oxidation and IP25) and dual-carbon isotopes (δ13C and Δ14C). In addition, surface water chemical properties were integrated with the POM (> 10 µm) dataset to understand the link between plankton composition and environmental conditions. δ13C and Δ14C exhibited a large variability in the POM (> 10 µm) distribution while the content of terrestrial biomarkers in the POM was negligible. In the Laptev Sea (LS), δ13C and Δ14C of POM (> 10 µm) suggested a heterotrophic environment in which dissolved organic carbon (DOC) from the Lena River was the primary source of metabolisable carbon. Within the Lena plume, terrestrial DOC probably became part of the food web via bacteria uptake and subsequently transferred to relatively other heterotrophic communities (e.g. dinoflagellates). Moving eastwards toward the sea-ice-dominated East Siberian Sea (ESS), the system became progressively more autotrophic. Comparison between δ13C of POM (> 10 µm) samples and CO2aq concentrations revealed that the carbon isotope fractionation increased moving towards the easternmost and most productive stations. In a warming scenario characterised by enhanced terrestrial DOC release (thawing permafrost) and progressive sea ice decline, heterotrophic conditions might persist in the LS while the nutrient-rich Pacific inflow will likely stimulate greater primary productivity in the ESS. The contrasting trophic conditions will result in a sharp gradient in δ13C between the LS and ESS, similar to what is documented in our semi-synoptic study.

Contrasting population histories of the deep-sea demersal fish, Lycodes matsubarai, in the Sea of Japan and the Sea of Okhotsk.

PubMed

Sakuma, Kay; Ueda, Yuji; Hamatsu, Tomonori; Kojima, Shigeaki

2014-06-01

Recent studies have revealed the impact of the drastic climate change during the last glacial period on coastal marine and anadromous species in the marginal seas of the northwestern Pacific Ocean; however, its influence on deep-sea species remains poorly understood. To compare the effects of the last glacial period on populations from the Sea of Japan and the Sea of Okhotsk, we examined the mitochondrial control region and cytochrome b gene sequences of Lycodes matsubarai, a deepsea demersal fish that inhabits these two seas. Our results showed clear genetic differentiation of populations between the two seas. The populations may have diverged during the last glacial period, probably as a result of vicariance due to the drastic sea level change. The population in the Sea of Okhotsk was larger than that in the Sea of Japan, but suddenly decreased after the last glacial period. However, the Sea of Japan population expanded after the last glacial period, coincident with high levels of oxygenation in deep-sea areas. These results elucidate regional-scale impacts of climate change on deep-sea organisms.

Intermediate to deep water hydrographic changes of the Japan Sea over the past 10 Myr, inferred from radiolarian data (IODP Exp. 346, Site U1425)

NASA Astrophysics Data System (ADS)

Matsuzaki, Kenji M.; Itaki, Takuya; Tada, Ryuji; Kurokawa, Shunsuke

2017-04-01

The Japan Sea is a back-arc basin opened under a continental rifting during the Early to Middle Miocene (ca. 25-13 Ma). This area is characterized by active tectonism, which drastically modified the Japan Sea paleogeography such as the sill depth of its key straits. In modern condition, the Japan Sea is connected to adjacent marginal seas and the Pacific Ocean by four straits shallower than 130 m. These straits are the Tsushima Strait connecting to the East China Sea, the Tsugaru Strait connecting to the Pacific, and the Soya and Mamiya Straits connecting to the Sea of Okhotsk. Therefore, the intermediate and deep water of the Japan Sea is isolated, leading the formation of a unique and regional deep sea water, known as the Japan Sea Proper Water. However, past studies show that during the late Miocene and Pliocene, only the Tsugaru Strait connecting to the North Pacific was opened. This strait was deeper during Plio-Miocene and have likely enable inflow of deep to intermediate water of the North Pacific in the Japan Sea. Radiolarians are one of the planktic micro-organisms group bearing siliceous skeletons. Their species comprise shallow to deep water dwellers, sensitive to changes in sea water physical/ecological properties forced by climate changes. Their fossils are known for be well preserved in the deep-sea sediments of the North Pacific. Therefore, in this study we propose to monitor changes in intermediate to deep water hydrography of the Japan Sea since the late Miocene, using radiolarian as an environmental proxy. In 2013 the IODP Expedition 346 retrieved sediment cores at different sites in the Japan Sea. In this study, we have analyzed 139 core sediments samples collected at Site U1425. This site is situated in the middle of the Yamato Bank. We selected this site because the past 10 Myr could be recovered continuously without hiatuses. Changes in radiolarian assemblages reveal that the oceanographic setting of the Japan Sea changed drastically at ca. 2.7 Ma. For older interval (2.7- 10 Ma), deep water species of the North Pacific could be identified at site U1425, inferring influences of deep water from the North Pacific and consequently a deeper sill depths of the connecting strait. Radiolarian assemblages also show that the intermediate water of the Japan sea is characterized by taxa living in equatorial to mid latitude area of the Northwest Pacific during the time interval between 2.7-10 Ma. While between 4 and 5 Ma, taxa related to the Sea of Okhotsk show very high abundances, inferring also inflow of intermediate water from the Sea of Okhotsk in the Japan Sea.

Deep-sea diversity patterns are shaped by energy availability.

PubMed

Woolley, Skipton N C; Tittensor, Derek P; Dunstan, Piers K; Guillera-Arroita, Gurutzeta; Lahoz-Monfort, José J; Wintle, Brendan A; Worm, Boris; O'Hara, Timothy D

2016-05-19

The deep ocean is the largest and least-explored ecosystem on Earth, and a uniquely energy-poor environment. The distribution, drivers and origins of deep-sea biodiversity remain unknown at global scales. Here we analyse a database of more than 165,000 distribution records of Ophiuroidea (brittle stars), a dominant component of sea-floor fauna, and find patterns of biodiversity unlike known terrestrial or coastal marine realms. Both patterns and environmental predictors of deep-sea (2,000-6,500 m) species richness fundamentally differ from those found in coastal (0-20 m), continental shelf (20-200 m), and upper-slope (200-2,000 m) waters. Continental shelf to upper-slope richness consistently peaks in tropical Indo-west Pacific and Caribbean (0-30°) latitudes, and is well explained by variations in water temperature. In contrast, deep-sea species show maximum richness at higher latitudes (30-50°), concentrated in areas of high carbon export flux and regions close to continental margins. We reconcile this structuring of oceanic biodiversity using a species-energy framework, with kinetic energy predicting shallow-water richness, while chemical energy (export productivity) and proximity to slope habitats drive deep-sea diversity. Our findings provide a global baseline for conservation efforts across the sea floor, and demonstrate that deep-sea ecosystems show a biodiversity pattern consistent with ecological theory, despite being different from other planetary-scale habitats.

Temporal changes in photoreactivity of dissolved organic carbon and implications for aquatic carbon fluxes from peatlands

NASA Astrophysics Data System (ADS)

Pickard, Amy E.; Heal, Kate V.; McLeod, Andrew R.; Dinsmore, Kerry J.

2017-04-01

Aquatic systems draining peatland catchments receive a high loading of dissolved organic carbon (DOC) from the surrounding terrestrial environment. Whilst photo-processing is known to be an important process in the transformation of aquatic DOC, the drivers of temporal variability in this pathway are less well understood. In this study, 8 h laboratory irradiation experiments were conducted on water samples collected from two contrasting peatland aquatic systems in Scotland: a peatland stream and a reservoir in a catchment with high percentage peat cover. Samples were collected monthly at both sites from May 2014 to May 2015 and from the stream system during two rainfall events. DOC concentrations, absorbance properties and fluorescence characteristics were measured to investigate characteristics of the photochemically labile fraction of DOC. CO2 and CO produced by irradiation were also measured to determine gaseous photoproduction and intrinsic sample photoreactivity. Significant variation was seen in the photoreactivity of DOC between the two systems, with total irradiation-induced changes typically 2 orders of magnitude greater at the high-DOC stream site. This is attributed to longer water residence times in the reservoir rendering a higher proportion of the DOC recalcitrant to photo-processing. During the experimental irradiation, 7 % of DOC in the stream water samples was photochemically reactive and direct conversion to CO2 accounted for 46 % of the measured DOC loss. Rainfall events were identified as important in replenishing photoreactive material in the stream, with lignin phenol data indicating mobilisation of fresh DOC derived from woody vegetation in the upper catchment. This study shows that peatland catchments produce significant volumes of aromatic DOC and that photoreactivity of this DOC is greatest in headwater streams; however, an improved understanding of water residence times and DOC input-output along the source to sea aquatic pathway is required to determine the fate of peatland carbon.

Simply actuated closure for a pressure vessel - Design for use to trap deep-sea animals

NASA Technical Reports Server (NTRS)

Yayanos, A. A.

1977-01-01

A pressure vessel is described that can be closed by a single translational motion within 1 sec. The vessel is a key component of a trap for small marine animals and operates automatically on the sea floor. As the vessel descends to the sea floor, it is subjected both internally and externally to the high pressures of the deep sea. The mechanism for closing the pressure vessel on the sea floor is activated by the timed release of the ballast which was used to sink the trap. As it rises to the sea surface, the internal pressure of the vessel remains near the value present on the sea floor. The pressure vessel has been used in simulated ocean deployments and in the deep ocean (9500 m) with a 75%-85% retention of the deep-sea pressure. Nearly 100% retention of pressure can be achieved by using an accumulator filled with a gas.

Sensitivity of Deep Soil Organic Carbon Age to Sorption, Transport and Microbial Interactions - Insights from a Calibrated Process Model

NASA Astrophysics Data System (ADS)

Ahrens, B.; Schrumpf, M.; Reichstein, M.

2013-12-01

Subsoil soil organic carbon (SOC) is characterized by conventional radiocarbon ages on the order of centuries to millennia. Most vertically explicit SOC turnover models represent this persistence of deep SOC by one pool that has millennial turnover times. This approach lumps different stabilizing mechanisms such as chemical recalcitrance, sorptive stabilization and energy limitation into a single rate constant. As an alternative, we present a continuous, vertically explicit SOC decomposition model that allows for stabilization via sorption and microbial interactions (COMISSION model). We compare the COMISSION model with the SOC profile of a Haplic Podzol under a Norway spruce forest. In the COMISSION model two pools receive aboveground litter input and vertically distributed root litter input. The readily leachable and soluble fraction of litter input enters a dissolved organic carbon pool (DOC), while the rest enters the residue pool which represents polymeric, non-soluble SOC. The residue pool is depolymerized with extracellular enzymes produced by a microbial pool to enter the DOC pool which represents SOC potentially available for assimilation by microbes. The adsorption/desorption of DOC from/to mineral surfaces controls the availability of carbon in the DOC pool for assimilatory uptake by microbes. The sorption of DOC is modeled with dynamic Langmuir equations. The desorbed part of the DOC pool not only constitutes the substrate for the microbial pool, but is also transported via advection. Interactions of microbes with the residue and DOC pool are modeled with Michaelis-Menten kinetics - this not only allows representing ';priming', but also the retardation of decomposition via energy limitation in the deep soil where substrate is scarce. Further, soil organic matter is recycled within the soil profile through microbial processing - dead microbes either enter the DOC or the residue pool, and thereby also contribute to longer residence times with soil depth. First results of a calibration against SOC, SO14C, MOC and MO14C profiles (mineral associated organic carbon, density fraction >1.6 g cm-3) of a Haplic Podzol of the Waldstein site (Germany) show that we can use the maximum sorption capacity (qmax) estimated from batch sorption experiments to parameterize the dynamic Langmuir sorption equation. qmax could potentially be extrapolated to other soil profiles based on relations to iron and aluminum oxide contents. Although we are able to capture the secondary maximum of SOC contents in the Bh horizon with qmax from batch sorption experiments, our results indicate that the adsorption and desorption rates retrieved from batch sorption experiments are too fast to explain the low Δ14C values of the MOC. This could point to other processes apart from DOC sorption that trigger stabilization by organo-mineral associations with a stronger apparent irreversibility (e.g. inclusion in small pores). Alternatively, the conditions of batch sorption experiments (constant shaking in centrifuge tubes) might not be representative for in situ sorption conditions. Overall, we show how effective decomposition rates and 14C ages readily emerge from a combination of known stabilizing and destabilizing mechanisms and we discuss how to identify these processes with a model-data fusion framework.

Potential sound production by a deep-sea fish

NASA Astrophysics Data System (ADS)

Mann, David A.; Jarvis, Susan M.

2004-05-01

Swimbladder sonic muscles of deep-sea fishes were described over 35 years ago. Until now, no recordings of probable deep-sea fish sounds have been published. A sound likely produced by a deep-sea fish has been isolated and localized from an analysis of acoustic recordings made at the AUTEC test range in the Tongue of the Ocean, Bahamas, from four deep-sea hydrophones. This sound is typical of a fish sound in that it is pulsed and relatively low frequency (800-1000 Hz). Using time-of-arrival differences, the sound was localized to 548-696-m depth, where the bottom was 1620 m. The ability to localize this sound in real-time on the hydrophone range provides a great advantage for being able to identify the sound-producer using a remotely operated vehicle.

Challenging the paradigms of deep-sea ecology.

PubMed

Danovaro, Roberto; Snelgrove, Paul V R; Tyler, Paul

2014-08-01

Deep-sea ecosystems represent Earth's major ecological research frontier. Focusing on seafloor ecosystems, we demonstrate how new technologies underpin discoveries that challenge major ecological hypotheses and paradigms, illuminating new deep-sea geosphere-biosphere interactions. We now recognize greater habitat complexity, new ecological interactions and the importance of 'dark energy', and chemosynthetic production in fuelling biodiversity. We also acknowledge functional hotspots that contradict a food-poor, metabolically inactive, and minor component of global carbon cycles. Symbioses appear widespread, revealing novel adaptations. Populations show complex spatial structure and evolutionary histories. These new findings redefine deep-sea ecology and the role of Earth's largest biome in global biosphere functioning. Indeed, deep-sea exploration can open new perspectives in ecological research to help mitigate exploitation impacts. Copyright © 2014 Elsevier Ltd. All rights reserved.

Dissolved Organic Carbon in the Yukon, Tanana and Porcupine Rivers, Alaska

NASA Astrophysics Data System (ADS)

Aiken, G. R.; Striegl, R. G.; Wickland, K. P.; Dornblaser, M. M.; Raymond, P. A.

2006-12-01

The spatial and temporal variability of dissolved organic carbon (DOC) in the Yukon River (YR) and two major tributaries, the Porcupine River (PR), a black water river draining a watershed almost entirely underlain by permafrost, and the Tanana River (TR), a glacial dominated river, are being studied to better define processes controlling DOC in these systems. Five-year seasonal averages indicate DOC concentrations follow the discharge hydrograph, with highest daily and seasonal flux occurring during spring in YR and PR and during summer-autumn in TR. Largest DOC concentrations and specific UV absorption (SUVA) values, a measure of aromatic carbon content of the DOC and an indicator of DOC source, occurred at all locations during spring snowmelt. Lowest DOC concentration and SUVA occurred during low-flow in winter due to greatly reduced contributions of soil organic matter and to relatively greater influences of ground water. While all sites had comparable DOC concentration during winter, DOC concentration was greatest at PR during spring and summer-autumn, whereas TR had the lowest average DOC and SUVA values. Within the YR, average DOC concentration and SUVA values in spring and summer-autumn increase downriver due to contributions from organic carbon rich tributaries, such as PR, that increase in number and significance as the river flows through Alaska. Most the DOC in each system was comprised of hydrophobic organic acids (HPOA) derived from terrestrial vegetation. During winter, the hydrophilic fraction, determined to be the most biodegradable, was a larger percentage of the DOC than during spring-autumn. During spring, HPOA concentration and SUVA increased significantly at all sites, suggesting that most DOC in spring is derived from terrestrial organic matter that was frozen on the land surface over winter. During spring-autumn, PR had the largest concentration of HPOA and TR had the least. Like DOC concentration, HPOA concentration and SUVA increased down river. 14C-DOC values correspond to radiocarbon ages of modern (PR), 282 (TR), and 328 (YR) yrs B.P, indicating the presence of some aged DOC in YR and TR. Comparison of the chemical character of DOC from sites along the YR suggests that most DOC is transported from its source to the Bering Sea with little within river chemical or biological alteration, a result supported by laboratory biodegradation experiments.

Taxonomic research on deep-sea macrofauna in the South China Sea using the Chinese deep-sea submersible Jiaolong.

PubMed

Li, Xinzheng

2017-07-01

This paper reviews the taxonomic and biodiversity studies of deep-sea invertebrates in the South China Sea based on the samples collected by the Chinese manned deep-sea submersible Jiaolong. To date, 6 new species have been described, including the sponges Lophophysema eversa, Saccocalyx microhexactin and Semperella jiaolongae as well as the crustaceans Uroptychus jiaolongae, Uroptychus spinulosus and Globospongicola jiaolongi; some newly recorded species from the South China Sea have also been reported. The Bathymodiolus platifrons-Shinkaia crosnieri deep-sea cold seep community has been reported by Li (2015), as has the mitochondrial genome of the glass sponge L. eversa by Zhang et al. (2016). The population structures of two dominant species, the shrimp Shinkaia crosnieri and the mussel Bathymodiolus platifrons, from the cold seep Bathymodiolus platifrons-Shinkaia crosnieri community in the South China Sea and the hydrothermal vents in the Okinawa Trough, were compared using molecular analysis. The systematic position of the shrimp genus Globospongicola was discussed based on 16S rRNA gene sequences. © 2017 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Microbial enzymatic activity and secondary production in sediments affected by the sedimentation pulse following the Deepwater Horizon oil spill

NASA Astrophysics Data System (ADS)

Ziervogel, Kai; Joye, Samantha B.; Arnosti, Carol

2016-07-01

A large fraction of the spilled oil from the Deepwater Horizon (DwH) blowout in April 2010 reached the seafloor via sinking oil aggregates (oil snow) in a massive sedimentation that continued until late summer 2010 (;Dirty blizzard;). We measured heterotrophic microbial metabolic rates as well as porewater and sedimentary geochemical parameters at sites proximate to and distant from the wellhead to investigate microbial responses to the "Dirty Blizzard". Lipase activity and rates of bacterial protein production were highest and leucine-aminopeptidase activity was lowest in 0-2 cm sediment layers at the sites proximate to the wellhead. These results suggest that the presence of the oil snow stimulated benthic microbial enzymatic hydrolysis of oil-derived organic matter that was depleted in peptide substrates at the time of our sampling. The strong gradients in porewater DOC, NH4+, and HPO43- concentrations in the upper 6 cm of the sediments near the wellhead likewise indicate elevated heterotrophic responses to recently-sedimented organic matter. In addition to enhanced microbial activities in the 0-2 cm sediment layers, we found peaks of total organic carbon and elevated microbial metabolic rates down to 10 cm at the sites closest to the wellhead. Our results indicate distinct benthic metabolic responses of heterotrophic microbial communities, even three months after the ending of the "Dirty Blizzard". Compared to other deep-sea environments, however, metabolic rates associated with the recently deposited particulate matter around the wellhead were only moderately enhanced. Oil contaminants at the seafloor may therefore have prolonged residence times, enhancing the potential for longer-term ecological consequences in deep-sea environments.

78 FR 54591 - Fisheries of the Exclusive Economic Zone Off Alaska; Greenland Turbot in the Bering Sea and...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-05

..., Office of Sustainable Fisheries, National Marine Fisheries Service. [FR Doc. 2013-21615 Filed 8-30-13; 4... Bering Sea and Aleutian Islands Management Area (BSAI). This action is necessary to fully use the 2013...: Effective 1200 hrs, Alaska local time (A.l.t.), September 1, 2013, through 2400 hrs, A.l.t., December 31...

The unique deep sea—land connection: interactive 3D visualization and molecular phylogeny of Bathyhedyle boucheti n. sp. (Bathyhedylidae n. fam.)—the first panpulmonate slug from bathyal zones

PubMed Central

Jörger, Katharina M.; Lodde-Bensch, Eva; Schrödl, Michael

2016-01-01

The deep sea comprises vast unexplored areas and is expected to conceal significant undescribed invertebrate species diversity. Deep waters may act as a refuge for many relictual groups, including elusive and enigmatic higher taxa, but the evolutionary pathways by which colonization of the deep sea has occurred have scarcely been investigated. Sister group relationships between shallow water and deep sea taxa have been documented in several invertebrate groups, but are unknown between amphibious/terrestrial and deep-sea species. Here we describe in full and interactive 3D morphoanatomical detail the new sea slug species Bathyhedyle boucheti n. sp., dredged from the continental slope off Mozambique. Molecular and morphological analyses reveal that it represents a novel heterobranch gastropod lineage which we establish as the new family Bathyhedylidae. The family is robustly supported as sister to the recently discovered panpulmonate acochlidian family Aitengidae, which comprises amphibious species living along the sea shore as well as fully terrestrial species. This is the first marine-epibenthic representative among hedylopsacean Acochlidiida, the first record of an acochlidian from deep waters and the first documented panpulmonate deep-sea slug. Considering a marine mesopsammic ancestor, the external morphological features of Bathyhedyle n. gen. may be interpreted as independent adaptations to a benthic life style in the deep sea, including the large body size, broad foot and propodial tentacles. Alternatively, the common ancestor of Bathyhedylidae and Aitengidae may have been a macroscopic amphibious or even terrestrial species. We hypothesize that oophagy in the common ancestor of Aitengidae and Bathyhedylidae might explain the impressive ecological and evolutionary flexibility in habitat choice in the Acochlidiida. PMID:27957391

The economic implications of changing regulations for deep sea fishing under the European Common Fisheries Policy: UK case study.

PubMed

Mangi, Stephen C; Kenny, Andrew; Readdy, Lisa; Posen, Paulette; Ribeiro-Santos, Ana; Neat, Francis C; Burns, Finlay

2016-08-15

Economic impact assessment methodology was applied to UK fisheries data to better understand the implications of European Commission proposal for regulations to fishing for deep-sea stocks in the North-East Atlantic (EC COM 371 Final 2012) under the Common Fisheries Policy (CFP). The aim was to inform the on-going debate to develop the EC proposal, and to assist the UK fishing industry and Government in evaluating the most effective options to manage deep sea fish stocks. Results indicate that enforcing the EC proposal as originally drafted results in a number of implications for the UK fleet. Because of the proposed changes to the list of species defined as being deep sea species, and a new definition of what constitutes a vessel targeting deep sea species, a total of 695 active UK fishing vessels would need a permit to fish for deep sea species. However, due to existing and capped capacity limits many vessels would potentially not be able to obtain such a permit. The economic impact of these changes from the status quo reveals that in the short term, landings would decrease by 6540 tonnes, reducing gross value added by £3.3 million. Alternative options were also assessed that provide mitigation measures to offset the impacts of the proposed regulations whilst at the same time providing more effective protection of deep sea Vulnerable Marine Ecosystems (VMEs). The options include setting a 400m depth rule that identifies a depth beyond which vessels would potentially be classified as fishing for deep sea species and designating 'core areas' for deep sea fishing at depths>400m to minimise the risk of further impacts of bottom fishing gear on deep sea habitats. Applying a 400m depth limit and 'core fishing' area approach deeper than 400m, the impact of the EC proposal would essentially be reduced to zero, that is, on average no vessels (using the status quo capacity baseline) would be impacted by the proposal. Copyright © 2016 Elsevier B.V. All rights reserved.

Deepwater Program: Lophelia II, continuing ecological research on deep-sea corals and deep-reef habitats in the Gulf of Mexico

USGS Publications Warehouse

Demopoulos, Amanda W.J.; Ross, Steve W.; Kellogg, Christina A.; Morrison, Cheryl L.; Nizinski, Martha S.; Prouty, Nancy G.; Bourque, Jill R.; Galkiewicz, Julie P.; Gray, Michael A.; Springmann, Marcus J.; Coykendall, D. Katharine; Miller, Andrew; Rhode, Mike; Quattrini, Andrea; Ames, Cheryl L.; Brooke, Sandra D.; McClain Counts, Jennifer; Roark, E. Brendan; Buster, Noreen A.; Phillips, Ryan M.; Frometa, Janessy

2017-12-11

The deep sea is a rich environment composed of diverse habitat types. While deep-sea coral habitats have been discovered within each ocean basin, knowledge about the ecology of these habitats and associated inhabitants continues to grow. This report presents information and results from the Lophelia II project that examined deep-sea coral habitats in the Gulf of Mexico. The Lophelia II project focused on Lophelia pertusa habitats along the continental slope, at depths ranging from 300 to 1,000 meters. The chapters are authored by several scientists from the U.S. Geological Survey, National Oceanic and Atmospheric Administration, University of North Carolina Wilmington, and Florida State University who examined the community ecology (from microbes to fishes), deep-sea coral age, growth, and reproduction, and population connectivity of deep-sea corals and inhabitants. Data from these studies are presented in the chapters and appendixes of the report as well as in journal publications. This study was conducted by the Ecosystems Mission Area of the U.S. Geological Survey to meet information needs identified by the Bureau of Ocean Energy Management.

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2013-12-01

Runoff from small glacier systems contains dissolved organic carbon (DOC), rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (1200 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed and contains a significant bioreactive component (9% carbohydrates). A major source for the "bioavailable" (free carbohydrates) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (30-58%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the ~ 2 fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating supply-limitation of suspended sediment in runoff. Scaled to the GrIS, the combined DOC and POC fluxes (0.13-0.17 Tg C yr-1 DOC, 0.36-1.52 Tg C yr-1 mean POC) are of a similar order of magnitude to a large Arctic river system, and hence represent an important OC source to the North Atlantic, Greenland and Labrador Seas.

Organic carbon export from the Greenland Ice Sheet: sources, sinks and downstream fluxes

NASA Astrophysics Data System (ADS)

Wadham, J. L.; Lawson, E.; Tranter, M.; Stibal, M.; Telling, J.; Lis, G. P.; Nienow, P. W.; Anesio, A. M.; Butler, C. E.

2012-12-01

Runoff from small glacier systems has been shown to contain dissolved organic carbon (DOC) rich in low molecular weight (LMW), and hence more labile forms, designating glaciers as an important source of carbon for downstream heterotrophic activity. Here we assess glacier surfaces as potential sources of labile DOC to downstream ecosystems, presenting data from a wide range of glacier systems to determine sources and sinks of DOC in glacial and proglacial systems. We subsequently focus upon the Greenland Ice Sheet (GrIS) which is the largest source of glacial runoff at present (400 km3 yr-1), with predicted increases in future decades. We report high fluxes of particulate organic carbon (POC), DOC and LMW labile fractions from a large GrIS catchment during two contrasting melt seasons. POC dominates OC export, is sourced from the ice sheet bed and contains a significant bioreactive component (~10% carbohydrates). The LMW-DOC "labile" fraction derives almost entirely from microbial activity on the ice sheet surface, which is supported by data from glacier systems also presented here. Annual fluxes of DOC, POC and labile components were lower in 2010 than 2009, despite a ~2 fold increase in runoff fluxes in 2010, suggesting production-limited DOC/POC sources. Scaled to the entire ice sheet, combined DOC and POC fluxes are of a similar order of magnitude to other large Arctic river systems and may represent an important source of organic carbon to the North Atlantic, Greenland and Labrador Seas.

CDOM Optical Properties and Connectivity in the Western Gulf of Alaska, the Unimak Pass and the Southeastern Bering Sea in the Spring During a Cold Year

NASA Astrophysics Data System (ADS)

D'Sa, E. J.; Goes, J. I.; Mouw, C. B.

2016-02-01

Flow through the Aleutian Passes connects the North Pacific to the Bering Sea with the Unimak Pass forming an important conduit for the flow of Gulf of Alaska water to the southeastern Bering shelf. While the biophysical properties have been studied for this region, little is known about the dissolved organic matter (DOM) and its optically active chromophoric component (CDOM) which play key roles in ocean color and several biogeochemical and photochemical processes. Dissolved organic carbon (DOC), and CDOM absorption and fluorescence properties were measured at locations in the western Gulf of Alaska, Unimak Pass and the southeastern Bering Sea in spring 2012, a relatively cold year as indicated by hydrographic field and satellite sea surface temperature data. DOC concentrations were on average higher in the western Gulf of Alaska (112.21 ± 20.05 µM) and Unimak Pass (106.14 ± 16.10 µM), than the southeastern Bering Sea shelf (73.28 ± 11.71 µM) suggesting Gulf of Alaska shelf water to be an important source of DOM to the eastern Bering Sea. Overall, CDOM absorption was relatively low while parallel factor (PARAFAC) analysis of DOM fluorescence identified two humic-like (terrestrial and marine) and one protein-like (tryptophan-like) component in the DOM pool. Relationships between the DOM optical properties and the physical regime will be further examined in this study.

Uncoupling of Bacterial and Terrigenous Dissolved Organic Matter Dynamics in Decomposition Experiments

PubMed Central

Herlemann, Daniel P. R.; Manecki, Marcus; Meeske, Christian; Pollehne, Falk; Labrenz, Matthias; Schulz-Bull, Detlef; Dittmar, Thorsten; Jürgens, Klaus

2014-01-01

The biodegradability of terrigenous dissolved organic matter (tDOM) exported to the sea has a major impact on the global carbon cycle, but our understanding of tDOM bioavailability is fragmentary. In this study, the effects of preparative tDOM isolation on microbial decomposition were investigated in incubation experiments consisting of mesocosms containing mesohaline water from the Baltic Sea. Dissolved organic carbon (DOC) consumption, molecular DOM composition, bacterial activities, and shifts in bacterial community structure were compared between mesocosms supplemented with riverine tDOM, either as filtered, particle-free river water or as a concentrate obtained by lyophilization/tangential ultrafiltration, and those containing only Baltic Sea water or river water. As shown using ultra-high-resolution mass spectrometry (15 Tesla Fourier-transform ion cyclotron resonance mass spectrometry, FT-ICR-MS) covering approximately 4600 different DOM compounds, the three DOM preparation protocols resulted in distinct patterns of molecular DOM composition. However, despite DOC losses of 4–16% and considerable bacterial production, there was no significant change in DOM composition during the 28-day experiment. Moreover, tDOM addition affected neither DOC degradation nor bacterial dynamics significantly, regardless of the tDOM preparation. This result suggested that the introduced tDOM was largely not bioavailable, at least on the temporal scale of our experiment, and that the observed bacterial activity and DOC decomposition mainly reflected the degradation of unknown, labile, colloidal and low-molecular weight DOM, both of which escape the analytical window of FT-ICR-MS. In contrast to the different tDOM preparations, the initial bacterial inoculum and batch culture conditions determined bacterial community succession and superseded the effects of tDOM addition. The uncoupling of tDOM and bacterial dynamics suggests that mesohaline bacterial communities cannot efficiently utilize tDOM and that in subarctic estuaries other factors are responsible for the removal of imported tDOM. PMID:24718626

North Atlantic deep water formation and AMOC in CMIP5 models

NASA Astrophysics Data System (ADS)

Heuzé, Céline

2017-07-01

Deep water formation in climate models is indicative of their ability to simulate future ocean circulation, carbon and heat uptake, and sea level rise. Present-day temperature, salinity, sea ice concentration and ocean transport in the North Atlantic subpolar gyre and Nordic Seas from 23 CMIP5 (Climate Model Intercomparison Project, phase 5) models are compared with observations to assess the biases, causes and consequences of North Atlantic deep convection in models. The majority of models convect too deep, over too large an area, too often and too far south. Deep convection occurs at the sea ice edge and is most realistic in models with accurate sea ice extent, mostly those using the CICE model. Half of the models convect in response to local cooling or salinification of the surface waters; only a third have a dynamic relationship between freshwater coming from the Arctic and deep convection. The models with the most intense deep convection have the warmest deep waters, due to a redistribution of heat through the water column. For the majority of models, the variability of the Atlantic Meridional Overturning Circulation (AMOC) is explained by the volumes of deep water produced in the subpolar gyre and Nordic Seas up to 2 years before. In turn, models with the strongest AMOC have the largest heat export to the Arctic. Understanding the dynamical drivers of deep convection and AMOC in models is hence key to realistically forecasting Arctic oceanic warming and its consequences for the global ocean circulation, cryosphere and marine life.

Microbial production and oxidation of methane in deep subsurface

NASA Astrophysics Data System (ADS)

Kotelnikova, Svetlana

2002-10-01

The goal of this review is to summarize present studies on microbial production and oxidation of methane in the deep subterranean environments. Methane is a long-living gas causing the "greenhouse" effect in the planet's atmosphere. Earlier, the deep "organic carbon poor" subsurface was not considered as a source of "biogenic" methane. Evidence of active methanogenesis and presence of viable methanogens including autotrophic organisms were obtained for some subsurface environments including water-flooded oil-fields, deep sandy aquifers, deep sea hydrothermal vents, the deep sediments and granitic groundwater at depths of 10 to 2000 m below sea level. As a rule, the deep subterranean microbial populations dwell at more or less oligotrophic conditions. Molecular hydrogen has been found in a variety of subsurface environments, where its concentrations were significantly higher than in the tested surface aquatic environments. Chemolithoautotrophic microorganisms from deep aquifers that could grow on hydrogen and carbon dioxide can act as primary producers of organic carbon, initiating heterotrophic food chains in the deep subterranean environments independent of photosynthesis. "Biogenic" methane has been found all over the world. On the basis of documented occurrences, gases in reservoirs and older sediments are similar and have the isotopic character of methane derived from CO 2 reduction. Groundwater representing the methanogenic end member are characterized by a relative depletion of dissolved organic carbon (DOC) in combination with an enrichment in 13C in inorganic carbon, which is consistent with the preferential reduction of 12CO 2 by autotrophic methanogens or acetogens. The isotopic composition of methane formed via CO 2 reduction is controlled by the δ13C of the original CO 2 substrate. Literature data shows that CH 4 as heavy as -40‰ or -50‰ can be produced by the microbial reduction of isotopically heavy CO 2. Produced methane may be oxidized microbially to carbon dioxide. Microbial methane oxidation is a biogeochemical process that limits the release of methane, a greenhouse gas from anaerobic environments. Anaerobic methane oxidation plays an important role in marine sediments. Similar processes may take place in deep subsurface and thus fuel the deep microbial community. Organisms or consortia responsible for anaerobic methane oxidation have not yet been cultured, although diverse aerobic methanotrophs have been isolated from a variety of underground niches. The presence of aerobic methanotrophs in the anoxic subsurface remains to be explained. The presence of methane in the deep subsurface have been shown all over the world. The flux of gases between the deep subsurface and the atmosphere is driven by the concentration gradient from depth to the atmosphere. However, methane is consumed by methanotrophs on the way of its evolution in oxidized environments and is transformed to organic form, available for further microbial processing. When the impact of subsurface environments to global warming is estimated, it is necessary to take into account the activity of methane-producing Archaea and methane-oxidizing biofilters in groundwater. Microbial production and oxidation of methane is involved in the carbon cycle in the deep subsurface environments.

Climate Influence on Deep Sea Populations

PubMed Central

Company, Joan B.; Puig, Pere; Sardà, Francesc; Palanques, Albert; Latasa, Mikel; Scharek, Renate

2008-01-01

Dynamics of biological processes on the deep-sea floor are traditionally thought to be controlled by vertical sinking of particles from the euphotic zone at a seasonal scale. However, little is known about the influence of lateral particle transport from continental margins to deep-sea ecosystems. To address this question, we report here how the formation of dense shelf waters and their subsequent downslope cascade, a climate induced phenomenon, affects the population of the deep-sea shrimp Aristeus antennatus. We found evidence that strong currents associated with intense cascading events correlates with the disappearance of this species from its fishing grounds, producing a temporary fishery collapse. Despite this initial negative effect, landings increase between 3 and 5 years after these major events, preceded by an increase of juveniles. The transport of particulate organic matter associated with cascading appears to enhance the recruitment of this deep-sea living resource, apparently mitigating the general trend of overexploitation. Because cascade of dense water from continental shelves is a global phenomenon, we anticipate that its influence on deep-sea ecosystems and fisheries worldwide should be larger than previously thought. PMID:18197243

Subsurface Hybrid Power Options for Oil & Gas Production at Deep Ocean Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farmer, J C; Haut, R; Jahn, G

2010-02-19

An investment in deep-sea (deep-ocean) hybrid power systems may enable certain off-shore oil and gas exploration and production. Advanced deep-ocean drilling and production operations, locally powered, may provide commercial access to oil and gas reserves otherwise inaccessible. Further, subsea generation of electrical power has the potential of featuring a low carbon output resulting in improved environmental conditions. Such technology therefore, enhances the energy security of the United States in a green and environmentally friendly manner. The objective of this study is to evaluate alternatives and recommend equipment to develop into hybrid energy conversion and storage systems for deep ocean operations.more » Such power systems will be located on the ocean floor and will be used to power offshore oil and gas exploration and production operations. Such power systems will be located on the oceans floor, and will be used to supply oil and gas exploration activities, as well as drilling operations required to harvest petroleum reserves. The following conceptual hybrid systems have been identified as candidates for powering sub-surface oil and gas production operations: (1) PWR = Pressurized-Water Nuclear Reactor + Lead-Acid Battery; (2) FC1 = Line for Surface O{sub 2} + Well Head Gas + Reformer + PEMFC + Lead-Acid & Li-Ion Batteries; (3) FC2 = Stored O2 + Well Head Gas + Reformer + Fuel Cell + Lead-Acid & Li-Ion Batteries; (4) SV1 = Submersible Vehicle + Stored O{sub 2} + Fuel Cell + Lead-Acid & Li-Ion Batteries; (5) SV2 = Submersible Vehicle + Stored O{sub 2} + Engine or Turbine + Lead-Acid & Li-Ion Batteries; (6) SV3 = Submersible Vehicle + Charge at Docking Station + ZEBRA & Li-Ion Batteries; (7) PWR TEG = PWR + Thermoelectric Generator + Lead-Acid Battery; (8) WELL TEG = Thermoelectric Generator + Well Head Waste Heat + Lead-Acid Battery; (9) GRID = Ocean Floor Electrical Grid + Lead-Acid Battery; and (10) DOC = Deep Ocean Current + Lead-Acid Battery.« less

A checklist of the deep sea fishes of the Levant Sea, Mediterranean Sea.

PubMed

Goren, Menachem; Galil, Bella S

2015-08-04

We list sixty five fish species collected at depths greater than 500 m in the Levant Basin, including 10 depth records. The Levantine bathyal ichthyofauna is characterized by its eurybathy, with an upper bathymetric boundary that permitted penetration of the shallow Gibraltar and Siculo-Tunisian sills, and a much lower bathymetric boundary than recorded for conspecifics elsewhere. The opportunistic and resilient ichthyofauna re-colonized recently the deep-sea following the last anoxic event (~ 6 kyr), forming assemblages notably distinct from those in the western Mediterranean. The exploration and production of deep seabed hydrocarbons have raised the specter of severe direct impacts to the deep habitats. There is an urgent need for documenting the full extent of deep-sea biodiversity, and for providing information for the development of competent and pragmatic management plans and effective conservation policies.

Use of a free ocean CO₂ enrichment (FOCE) system to evaluate the effects of ocean acidification on the foraging behavior of a deep-sea urchin.

PubMed

Barry, James P; Lovera, Chris; Buck, Kurt R; Peltzer, Edward T; Taylor, Josi R; Walz, Peter; Whaling, Patrick J; Brewer, Peter G

2014-08-19

The influence of ocean acidification in deep-sea ecosystems is poorly understood but is expected to be large because of the presumed low tolerance of deep-sea taxa to environmental change. We used a newly developed deep-sea free ocean CO2 enrichment (dp-FOCE) system to evaluate the potential consequences of future ocean acidification on the feeding behavior of a deep-sea echinoid, the sea urchin, Strongylocentrotus fragilis. The dp-FOCE system simulated future ocean acidification inside an experimental enclosure where observations of feeding behavior were performed. We measured the average movement (speed) of urchins as well as the time required (foraging time) for S. fragilis to approach its preferred food (giant kelp) in the dp-FOCE chamber (-0.46 pH units) and a control chamber (ambient pH). Measurements were performed during each of 4 trials (days -2, 2, 24, 27 after CO2 injection) during the month-long period when groups of urchins were continuously exposed to low pH or control conditions. Although urchin speed did not vary significantly in relation to pH or time exposed, foraging time was significantly longer for urchins in the low-pH treatment. This first deep-sea FOCE experiment demonstrated the utility of the FOCE system approach and suggests that the chemosensory behavior of a deep-sea urchin may be impaired by ocean acidification.

Uptake and distribution of organo-iodine in deep-sea corals.

PubMed

Prouty, Nancy G; Roark, E Brendan; Mohon, Leslye M; Chang, Ching-Chih

2018-07-01

Understanding iodine concentration, transport, and bioavailability is essential in evaluating iodine's impact to the environment and its effectiveness as an environmental biogeotracer. While iodine and its radionuclides have proven to be important tracers in geologic and biologic studies, little is known about transport of this element to the deep sea and subsequent uptake in deep-sea coral habitats. Results presented here on deep-sea black coral iodine speciation and iodine isotope variability provides key information on iodine behavior in natural and anthropogenic environments, and its geochemical pathway in the Gulf of Mexico. Organo-iodine is the dominant iodine species in the black corals, demonstrating that binding of iodine to organic matter plays an important role in the transport and transfer of iodine to the deep-sea corals. The identification of growth bands captured in high-resolution scanning electron images (SEM) with synchronous peaks in iodine variability suggest that riverine delivery of terrestrial-derived organo-iodine is the most plausible explanation to account for annual periodicity in the deep-sea coral geochemistry. Whereas previous studies have suggested the presence of annual growth rings in deep-sea corals, this present study provides a mechanism to explain the formation of annual growth bands. Furthermore, deep-sea coral ages based on iodine peak counts agree well with those ages derived from radiocarbon ( 14 C) measurements. These results hold promise for developing chronologies independent of 14 C dating, which is an essential component in constraining reservoir ages and using radiocarbon as a tracer of ocean circulation. Furthermore, the presence of enriched 129 I/ 127 I ratios during the most recent period of skeleton growth is linked to nuclear weapons testing during the 1960s. The sensitivity of the coral skeleton to record changes in surface water 129 I composition provides further evidence that iodine composition and isotope variability captured in proteinaceous deep-sea corals is a promising geochronometer as well as an emerging tracer for continental material flux. Published by Elsevier Ltd.

Uptake and distribution of organo-iodine in deep-sea corals

USGS Publications Warehouse

Prouty, Nancy G.; Roark, E. Brendan; Mohon, Leslye M.; Chang, Ching-Chih

2018-01-01

Understanding iodine concentration, transport, and bioavailability is essential in evaluating iodine's impact to the environment and its effectiveness as an environmental biogeotracer. While iodine and its radionuclides have proven to be important tracers in geologic and biologic studies, little is known about transport of this element to the deep sea and subsequent uptake in deep-sea coral habitats. Results presented here on deep-sea black coral iodine speciation and iodine isotope variability provides key information on iodine behavior in natural and anthropogenic environments, and its geochemical pathway in the Gulf of Mexico. Organo-iodine is the dominant iodine species in the black corals, demonstrating that binding of iodine to organic matter plays an important role in the transport and transfer of iodine to the deep-sea corals. The identification of growth bands captured in high-resolution scanning electron images (SEM) with synchronous peaks in iodine variability suggest that riverine delivery of terrestrial-derived organo-iodine is the most plausible explanation to account for annual periodicity in the deep-sea coral geochemistry. Whereas previous studies have suggested the presence of annual growth rings in deep-sea corals, this present study provides a mechanism to explain the formation of annual growth bands. Furthermore, deep-sea coral ages based on iodine peak counts agree well with those ages derived from radiocarbon (14C) measurements. These results hold promise for developing chronologies independent of 14C dating, which is an essential component in constraining reservoir ages and using radiocarbon as a tracer of ocean circulation. Furthermore, the presence of enriched 129I/127I ratios during the most recent period of skeleton growth is linked to nuclear weapons testing during the 1960s. The sensitivity of the coral skeleton to record changes in surface water 129I composition provides further evidence that iodine composition and isotope variability captured in proteinaceous deep-sea corals is a promising geochronometer as well as an emerging tracer for continental material flux.

Widespread Miocene deep-sea hiatuses: coincidence with periods of global cooling.

USGS Publications Warehouse

Barron, J.A.; Keller, G.

1982-01-01

High-resolution biostratigraphic analyses of Miocene deep-sea cores reveal eight intervals of widespread hiatuses in the world ocean. In complete sections these hiatuses correspond to intervals of cool faunal and floral assemblages, rapid enrichment of delta 18O, and sea-level regressions. These factors suggest that Miocene deep-sea hiatuses result from an increased intensity of circulation and corrosiveness of bottom currents during periods of increased polar refrigeration.-Authors

Countermeasure Study on Deep-sea Oil Exploitation in the South China Sea——A Comparison between Deep-sea Oil Exploitation in the South China Sea and the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Zhao, Hui; Qiu, Weiting; Qu, Weilu

2018-02-01

The unpromising situation of terrestrial oil resources makes the deep-sea oil industry become an important development strategy. The South China Sea has a vast sea area with a wide distribution of oil and gas resources, but there is a phenomenon that exploration and census rates and oil exploitation are low. In order to solve the above problems, this article analyzes the geology, oil and gas exploration and exploration equipment in the South China Sea and the Gulf of Mexico. Comparing the political environment of China and the United States energy industry and the economic environment of oil companies, this article points out China’s deep-sea oil exploration and mining problems that may exist. Finally, the feasibility of oil exploration and exploitation in the South China Sea is put forward, which will provide reference to improve the conditions of oil exploration in the South China Sea and promoting the stable development of China’s oil industry.

Reconciliation of late Quaternary sea levels derived from coral terraces at Huon Peninsula with deep sea oxygen isotope records

NASA Astrophysics Data System (ADS)

Chappell, John; Omura, Akio; Esat, Tezer; McCulloch, Malcolm; Pandolfi, John; Ota, Yoko; Pillans, Brad

1996-06-01

A major discrepancy between the Late Quaternary sea level changes derived from raised coral reef terraces at the Huon Peninsula in Papua New Guinea and from oxygen isotopes in deep sea cores is resolved. The two methods agree closely from 120 ka to 80 ka and from 20 ka to 0 ka (ka = 1000 yr before present), but between 70 and 30 ka the isotopic sea levels are 20-40 m lower than the Huon Peninsula sea levels derived in earlier studies. New, high precision U-series age measurements and revised stratigraphic data for Huon Peninsula terraces aged between 30 and 70 ka now give similar sea levels to those based on deep sea oxygen isotope data planktonic and benthic δ 18O data. Using the sea level and deep sea isotopic data, oxygen isotope ratios are calculated for the northern continental ice sheets through the last glacial cycle and are consistent with results from Greenland ice cores. The record of ice volume changes through the last glacial cycle now appears to be reasonably complete.

Terrestrial source to deep-sea sink sediment budgets at high and low sea levels: Insights from tectonically active Southern California

USGS Publications Warehouse

Covault, J.A.; Romans, B.W.; Graham, S.A.; Fildani, A.; Hilley, G.E.

2011-01-01

Sediment routing from terrestrial source areas to the deep sea influences landscapes and seascapes and supply and filling of sedimentary basins. However, a comprehensive assessment of land-to-deep-sea sediment budgets over millennia with significant climate change is lacking. We provide source to sink sediment budgets using cosmogenic radionuclide-derived terrestrial denudation rates and submarine-fan deposition rates through sea-level fluctuations since oxygen isotope stage 3 (younger than 40 ka) in tectonically active, spatially restricted sediment-routing systems of Southern California. We show that source-area denudation and deep-sea deposition are balanced during a period of generally falling and low sea level (40-13 ka), but that deep-sea deposition exceeds terrestrial denudation during the subsequent period of rising and high sea level (younger than 13 ka). This additional supply of sediment is likely owed to enhanced dispersal of sediment across the shelf caused by seacliff erosion during postglacial shoreline transgression and initiation of submarine mass wasting. During periods of both low and high sea level, land and deep-sea sediment fluxes do not show orders of magnitude imbalances that might be expected in the wake of major sea-level changes. Thus, sediment-routing processes in a globally significant class of small, tectonically active systems might be fundamentally different from those of larger systems that drain entire orogens, in which sediment storage in coastal plains and wide continental shelves can exceed millions of years. Furthermore, in such small systems, depositional changes offshore can reflect onshore changes when viewed over time scales of several thousand years to more than 10 k.y. ?? 2011 Geological Society of America.

77 FR 71590 - New England Hydropower Company, LLC; Notice of Preliminary Permit Application Accepted for Filing...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-03

...-wide, and 10-foot-deep head box and intake channel; (4) a new 6-foot-high, 14-foot-wide sluice gate...) an existing 375-foot-long, 20- foot-wide, and 4-foot-deep tailrace; (8) a new above ground 300-foot... instructions on the Commission's Web site http://www.ferc.gov/docs-filing/efiling.asp . Commenters can submit...

76 FR 38383 - Ballville Hydroelectric Group, LLC; Notice of Preliminary Permit Application Accepted for Filing...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-30

... wide by 50 feet long by 30 feet deep; (3) the existing 50-foot-long by 20-foot-wide by 30-foot- deep... Commission's Web site ( http://www.ferc.gov/docs-filing/ferconline.asp ) under the ``eFiling'' link. For a... 20426. For more information on how to submit these types of filings please go to the Commission's Web...

Trophic dynamics of deep-sea megabenthos are mediated by surface productivity.

PubMed

Tecchio, Samuele; van Oevelen, Dick; Soetaert, Karline; Navarro, Joan; Ramírez-Llodra, Eva

2013-01-01

Most deep-sea benthic ecosystems are food limited and, in the majority of cases, are driven by the organic matter falling from the surface or advected downslope. Species may adapt to this scarceness by applying a wide variety of responses, such as feeding specialisation, niche width variation, and reduction in metabolic rates. The Mediterranean Sea hosts a gradient of food availability at the deep seafloor over its wide longitudinal transect. In the Mediterranean, broad regional studies on trophic habits are almost absent, and the response of deep-sea benthos to different trophic conditions is still speculative. Here, we show that both primary and secondary production processes taking place at surface layers are key drivers of deep-sea food web structuring. By employing an innovative statistical tool, we interpreted bulk-tissue δ(13)C and δ(15)N isotope ratios in benthic megafauna, and associated surface and mesopelagic components from the 3 basins of the Mediterranean Sea at 3 different depths (1200, 2000, and 3000 m). The trophic niche width and the amplitude of primary carbon sources were positively correlated with both primary and secondary surface production indicators. Moreover, mesopelagic organic matter utilization processes showed an intermediate position between surface and deep benthic components. These results shed light on the understanding of deep-sea ecosystems functioning and, at the same time, they demand further investigation.

Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning.

PubMed

Dell'Anno, Antonio; Corinaldesi, Cinzia; Danovaro, Roberto

2015-04-21

Viruses are key biological agents of prokaryotic mortality in the world oceans, particularly in deep-sea ecosystems where nearly all of the prokaryotic C production is transformed into organic detritus. However, the extent to which the decomposition of viral particles (i.e., organic material of viral origin) influences the functioning of benthic deep-sea ecosystems remains completely unknown. Here, using various independent approaches, we show that in deep-sea sediments an important fraction of viruses, once they are released by cell lysis, undergo fast decomposition. Virus decomposition rates in deep-sea sediments are high even at abyssal depths and are controlled primarily by the extracellular enzymatic activities that hydrolyze the proteins of the viral capsids. We estimate that on a global scale the decomposition of benthic viruses releases ∼37-50 megatons of C per year and thus represents an important source of labile organic compounds in deep-sea ecosystems. Organic material released from decomposed viruses is equivalent to 3 ± 1%, 6 ± 2%, and 12 ± 3% of the input of photosynthetically produced C, N, and P supplied through particles sinking to bathyal/abyssal sediments. Our data indicate that the decomposition of viruses provides an important, previously ignored contribution to deep-sea ecosystem functioning and has an important role in nutrient cycling within the largest ecosystem of the biosphere.

The Effects of Temperature and Hydrostatic Pressure on Metal Toxicity: Insights into Toxicity in the Deep Sea.

PubMed

Brown, Alastair; Thatje, Sven; Hauton, Chris

2017-09-05

Mineral prospecting in the deep sea is increasing, promoting concern regarding potential ecotoxicological impacts on deep-sea fauna. Technological difficulties in assessing toxicity in deep-sea species has promoted interest in developing shallow-water ecotoxicological proxy species. However, it is unclear how the low temperature and high hydrostatic pressure prevalent in the deep sea affect toxicity, and whether adaptation to deep-sea environmental conditions moderates any effects of these factors. To address these uncertainties we assessed the effects of temperature and hydrostatic pressure on lethal and sublethal (respiration rate, antioxidant enzyme activity) toxicity in acute (96 h) copper and cadmium exposures, using the shallow-water ecophysiological model organism Palaemon varians. Low temperature reduced toxicity in both metals, but reduced cadmium toxicity significantly more. In contrast, elevated hydrostatic pressure increased copper toxicity, but did not affect cadmium toxicity. The synergistic interaction between copper and cadmium was not affected by low temperature, but high hydrostatic pressure significantly enhanced the synergism. Differential environmental effects on toxicity suggest different mechanisms of action for copper and cadmium, and highlight that mechanistic understanding of toxicity is fundamental to predicting environmental effects on toxicity. Although results infer that sensitivity to toxicants differs across biogeographic ranges, shallow-water species may be suitable ecotoxicological proxies for deep-sea species, dependent on adaptation to habitats with similar environmental variability.

Trophic Dynamics of Deep-Sea Megabenthos Are Mediated by Surface Productivity

PubMed Central

Tecchio, Samuele; van Oevelen, Dick; Soetaert, Karline; Navarro, Joan; Ramírez-Llodra, Eva

2013-01-01

Most deep-sea benthic ecosystems are food limited and, in the majority of cases, are driven by the organic matter falling from the surface or advected downslope. Species may adapt to this scarceness by applying a wide variety of responses, such as feeding specialisation, niche width variation, and reduction in metabolic rates. The Mediterranean Sea hosts a gradient of food availability at the deep seafloor over its wide longitudinal transect. In the Mediterranean, broad regional studies on trophic habits are almost absent, and the response of deep-sea benthos to different trophic conditions is still speculative. Here, we show that both primary and secondary production processes taking place at surface layers are key drivers of deep-sea food web structuring. By employing an innovative statistical tool, we interpreted bulk-tissue δ13C and δ15N isotope ratios in benthic megafauna, and associated surface and mesopelagic components from the 3 basins of the Mediterranean Sea at 3 different depths (1200, 2000, and 3000 m). The trophic niche width and the amplitude of primary carbon sources were positively correlated with both primary and secondary surface production indicators. Moreover, mesopelagic organic matter utilization processes showed an intermediate position between surface and deep benthic components. These results shed light on the understanding of deep-sea ecosystems functioning and, at the same time, they demand further investigation. PMID:23691098

Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning

PubMed Central

Dell’Anno, Antonio; Corinaldesi, Cinzia

2015-01-01

Viruses are key biological agents of prokaryotic mortality in the world oceans, particularly in deep-sea ecosystems where nearly all of the prokaryotic C production is transformed into organic detritus. However, the extent to which the decomposition of viral particles (i.e., organic material of viral origin) influences the functioning of benthic deep-sea ecosystems remains completely unknown. Here, using various independent approaches, we show that in deep-sea sediments an important fraction of viruses, once they are released by cell lysis, undergo fast decomposition. Virus decomposition rates in deep-sea sediments are high even at abyssal depths and are controlled primarily by the extracellular enzymatic activities that hydrolyze the proteins of the viral capsids. We estimate that on a global scale the decomposition of benthic viruses releases ∼37–50 megatons of C per year and thus represents an important source of labile organic compounds in deep-sea ecosystems. Organic material released from decomposed viruses is equivalent to 3 ± 1%, 6 ± 2%, and 12 ± 3% of the input of photosynthetically produced C, N, and P supplied through particles sinking to bathyal/abyssal sediments. Our data indicate that the decomposition of viruses provides an important, previously ignored contribution to deep-sea ecosystem functioning and has an important role in nutrient cycling within the largest ecosystem of the biosphere. PMID:25848024

ORCHIDEE-SOM: modeling soil organic carbon (SOC) and dissolved organic carbon (DOC) dynamics along vertical soil profiles in Europe

NASA Astrophysics Data System (ADS)

Camino-Serrano, Marta; Guenet, Bertrand; Luyssaert, Sebastiaan; Ciais, Philippe; Bastrikov, Vladislav; De Vos, Bruno; Gielen, Bert; Gleixner, Gerd; Jornet-Puig, Albert; Kaiser, Klaus; Kothawala, Dolly; Lauerwald, Ronny; Peñuelas, Josep; Schrumpf, Marion; Vicca, Sara; Vuichard, Nicolas; Walmsley, David; Janssens, Ivan A.

2018-03-01

Current land surface models (LSMs) typically represent soils in a very simplistic way, assuming soil organic carbon (SOC) as a bulk, and thus impeding a correct representation of deep soil carbon dynamics. Moreover, LSMs generally neglect the production and export of dissolved organic carbon (DOC) from soils to rivers, leading to overestimations of the potential carbon sequestration on land. This common oversimplified processing of SOC in LSMs is partly responsible for the large uncertainty in the predictions of the soil carbon response to climate change. In this study, we present a new soil carbon module called ORCHIDEE-SOM, embedded within the land surface model ORCHIDEE, which is able to reproduce the DOC and SOC dynamics in a vertically discretized soil to 2 m. The model includes processes of biological production and consumption of SOC and DOC, DOC adsorption on and desorption from soil minerals, diffusion of SOC and DOC, and DOC transport with water through and out of the soils to rivers. We evaluated ORCHIDEE-SOM against observations of DOC concentrations and SOC stocks from four European sites with different vegetation covers: a coniferous forest, a deciduous forest, a grassland, and a cropland. The model was able to reproduce the SOC stocks along their vertical profiles at the four sites and the DOC concentrations within the range of measurements, with the exception of the DOC concentrations in the upper soil horizon at the coniferous forest. However, the model was not able to fully capture the temporal dynamics of DOC concentrations. Further model improvements should focus on a plant- and depth-dependent parameterization of the new input model parameters, such as the turnover times of DOC and the microbial carbon use efficiency. We suggest that this new soil module, when parameterized for global simulations, will improve the representation of the global carbon cycle in LSMs, thus helping to constrain the predictions of the future SOC response to global warming.

Fingerprinting Dissolved Organic Carbon (DOC) Sources with Specific UV Absorbance (SUVA) and Fluorescence

NASA Astrophysics Data System (ADS)

van Verseveld, W. J.; Lajtha, K.; McDonnell, J. J.

2007-12-01

DOC is an important water quality constituent because it is an important food source for stream biota, it plays a significant role in metal toxicity and transport, and protects aquatic organisms by absorbing visible and UV light. However, sources of stream DOC and changes in DOC quality at storm and seasonal scales remain poorly understood. We characterized DOC concentrations and SUVA (as an indicator of aromaticity) at the plot, hillslope and catchment scale during and between five storm events over the period Fall 2004 until Spring 2005, in WS10, H.J. Andrews, Oregon, USA. This study site has hillslopes that issue directly into the stream. This enabled us to compare a trenched hillslope response to the stream response without the influence of a riparian zone. The main result of this study was that SUVA in addition to DOC was needed to fingerprint sources of DOC. Stream water and lateral subsurface flow showed a clockwise DOC and SUVA hysteresis pattern. Both organic horizon water and transient groundwater were characterized by high DOC concentrations and SUVA values, while DOC concentrations and SUVA values in soil water decreased with depth in the soil profile. This indicates transient groundwater was an important contributor to high DOC concentrations and SUVA values during storm events. During the falling limb of the hydrograph deep soil water and seepage groundwater based on SUVA values contributed significantly to lateral subsurface flow and stream water. Preliminary results showed that fluorescence of stream water and lateral subsurface flow continuously measured with a fluorometer was significantly related to UV-absorbance during a December storm event. Finally, SUVA of lateral subsurface flow was lower than SUVA of stream water at the seasonal scale, indicating a difference in mixing of water sources at the hillslope and catchment scale. Overall, our results show that SUVA and fluorescence are useful tracers for fingerprinting DOC sources.

The Impact of the Major Baltic Inflow of December 2014 on the Mercury Species Distribution in the Baltic Sea.

PubMed

Kuss, Joachim; Cordes, Florian; Mohrholz, Volker; Nausch, Günther; Naumann, Michael; Krüger, Siegfried; Schulz-Bull, Detlef E

2017-10-17

The Baltic Sea is a marginal sea characterized by stagnation periods of several years. Oxygen consumption in its deep waters leads to the buildup of sulfide from sulfate reduction. Some of the microorganisms responsible for these processes also transform reactive ionic mercury to neurotoxic methylmercury. Episodic inflows of oxygenated saline water from the North Sea temporally re-establish oxic life in deep waters of the Baltic Sea. Thus, this sea is an especially important region to better understand mercury species distributions in connection with variable redox conditions. Mercury species were measured on three Baltic Sea campaigns, during the preinflow, ongoing inflow, and subsiding inflow of water, respectively, to the central basin. The inflowing water caused the removal of total mercury by 600 nmol m -2 and of methylmercury by 214 nmol m -2 in the Gotland Deep, probably via attachment of the mercury compounds to sinking particles. It appears likely that the consequences of the oxygenation of Baltic Sea deep waters, which are the coprecipitation of mercury species and the resettlement of the oxic deep waters, could lead to the enhanced transfer of accumulated mercury and methylmercury to the planktonic food chain and finally to fish.

Disturbance of deep-sea environments induced by the M9.0 Tohoku Earthquake

PubMed Central

Kawagucci, Shinsuke; Yoshida, Yukari T.; Noguchi, Takuroh; Honda, Makio C.; Uchida, Hiroshi; Ishibashi, Hidenori; Nakagawa, Fumiko; Tsunogai, Urumu; Okamura, Kei; Takaki, Yoshihiro; Nunoura, Takuro; Miyazaki, Junichi; Hirai, Miho; Lin, Weiren; Kitazato, Hiroshi; Takai, Ken

2012-01-01

The impacts of the M9.0 Tohoku Earthquake on deep-sea environment were investigated 36 and 98 days after the event. The light transmission anomaly in the deep-sea water after 36 days became atypically greater (∼35%) and more extensive (thickness ∼1500 m) near the trench axis owing to the turbulent diffusion of fresh seafloor sediment, coordinated with potential seafloor displacement. In addition to the chemical influx associated with sediment diffusion, an influx of 13C-enriched methane from the deep sub-seafloor reservoirs was estimated. This isotopically unusual methane influx was possibly triggered by the earthquake and its aftershocks that subsequently induced changes in the sub-seafloor hydrogeologic structures. The whole prokaryotic biomass and the development of specific phylotypes in the deep-sea microbial communities could rise and fall at 36 and 98 days, respectively, after the event. We may capture the snap shots of post-earthquake disturbance in deep-sea chemistry and microbial community responses. PMID:22355782

Deep, diverse and definitely different: unique attributes of the world's largest ecosystem

NASA Astrophysics Data System (ADS)

Ramirez-Llodra, E.; Brandt, A.; Danovaro, R.; Escobar, E.; German, C. R.; Levin, L. A.; Martinez Arbizu, P.; Menot, L.; Buhl-Mortensen, P.; Narayanaswamy, B. E.; Smith, C. R.; Tittensor, D. P.; Tyler, P. A.; Vanreusel, A.; Vecchione, M.

2010-04-01

The deep sea, the largest biome on Earth, has a series of characteristics that make this environment both distinct from other marine and land ecosystems and unique for the entire planet. This review describes these patterns and processes, from geological settings to biological processes, biodiversity and biogeographical patterns. It concludes with a brief discussion of current threats from anthropogenic activities to deep-sea habitats and their fauna. Investigations of deep-sea habitats and their fauna began in the late 19th Century. In the intervening years, technological developments and stimulating discoveries have promoted deep-sea research and changed our way of understanding life on the planet. Nevertheless, the deep sea is still mostly unknown and current discovery rates of both habitats and species remain high. The geological, physical and geochemical settings of the deep-sea floor and the water column form a series of different habitats with unique characteristics that support specific faunal communities. Since 1840, 27 new habitats/ecosystems have been discovered from the shelf break to the deep trenches and discoveries of new habitats are still happening in the early 21st Century. However, for most of these habitats, the global area covered is unknown or has been only very roughly estimated; an even smaller - indeed, minimal - proportion has actually been sampled and investigated. We currently perceive most of the deep-sea ecosystems as heterotrophic, depending ultimately on the flux on organic matter produced in the overlying surface ocean through photosynthesis. The resulting strong food limitation, thus, shapes deep-sea biota and communities, with exceptions only in reducing ecosystems such as inter alia hydrothermal vents or cold seeps, where chemoautolithotrophic bacteria play the role of primary producers fuelled by chemical energy sources rather than sunlight. Other ecosystems, such as seamounts, canyons or cold-water corals have an increased productivity through specific physical processes, such as topographic modification of currents and enhanced transport of particles and detrital matter. Because of its unique abiotic attributes, the deep sea hosts a specialized fauna. Although there are no phyla unique to deep waters, at lower taxonomic levels the composition of the fauna is distinct from that found in the upper ocean. Amongst other characteristic patterns, deep-sea species may exhibit either gigantism or dwarfism, related to the decrease in food availability with depth. Food limitation on the seafloor and water column is also reflected in the trophic structure of deep-sea communities, which are adapted to low energy availability. In most of the heterotrophic deep-sea settings, the dominant megafauna is composed of detritivores, while filter feeders are abundant in habitats with hard substrata (e.g. mid-ocean ridges, seamounts, canyon walls and coral reefs) and chemoautotrophy through symbiotic relationships is dominant in reducing habitats. Deep-sea biodiversity is among of the highest on the planet, mainly composed of macro and meiofauna, with high evenness. This is true for most of the continental margins and abyssal plains with hot spots of diversity such as seamounts or cold-water corals. However, in some ecosystems with particularly "extreme" physicochemical processes (e.g. hydrothermal vents), biodiversity is low but abundance and biomass are high and the communities are dominated by a few species. Two large-scale diversity patterns have been discussed for deep-sea benthic communities. First, a unimodal relationship between diversity and depth is observed, with a peak at intermediate depths (2000-3000 m), although this is not universal and particular abiotic processes can modify the trend. Secondly, a poleward trend of decreasing diversity has been discussed, but this remains controversial and studies with larger and more robust datasets are needed. Because of the paucity in our knowledge of habitat coverage and species composition, biogeographic studies are mostly based on regional data or on specific taxonomic groups. Recently, global biogeographic provinces for the pelagic and benthic deep ocean have been described, using environmental and, where data were available, taxonomic information. This classification described 30 pelagic provinces and 38 benthic provinces divided into 4 depth ranges, as well as 10 hydrothermal vent provinces. One of the major issues faced by deep-sea biodiversity and biogeographical studies is related to the high number of species new to science that are collected regularly, together with the slow description rates for these new species. Taxonomic coordination at the global scale is particularly difficult but is essential if we are to analyse large diversity and biogeographic trends. Because of their remoteness, anthropogenic impacts on deep-sea ecosystems have not been addressed very thoroughly until recently. The depletion of biological and mineral resources on land and in shallow waters, coupled with technological developments, is promoting the increased interest in services provided by deep-water resources. Although often largely unknown, evidence for the effects of human activities in deep-water ecosystems - such as deep-sea mining, hydrocarbon exploration and exploitation, fishing, dumping and littering - is already accumulating. Because of our limited knowledge of deep-sea biodiversity and ecosystem functioning and because of the specific life-history adaptations of many deep-sea species (e.g. slow growth and delayed maturity), it is essential that the scientific community works closely with industry, conservation organisations and policy makers to develop conservation and management options.

Modelling impacts of temperature, and acidifying and eutrophying deposition on DOC trends

NASA Astrophysics Data System (ADS)

Sawicka, Kasia; Rowe, Ed; Evans, Chris; Monteith, Don; Vanguelova, Elena; Wade, Andrew; Clark, Joanna

2017-04-01

Surface water dissolved organic carbon (DOC) concentrations in large parts of the northern hemisphere have risen over the past three decades, raising concern about enhanced contributions of carbon to the atmosphere and seas and oceans. The effect of declining acid deposition has been identified as a key control on DOC trends in soil and surface waters, since pH and ionic strength affect sorption and desorption of DOC. However, since DOC is derived mainly from recently-fixed carbon, and organic matter decomposition rates are considered sensitive to temperature, uncertainty persists regarding the extent to the relative importance of different drivers that affect these upward trends. We ran the dynamic model MADOC (Model of Acidity and Soil Organic Carbon) for a range of UK soils (podzols, gleysols and peatland), for which the time-series were available, to consider the likely relative importance of decreased deposition of sulphate and chloride, accumulation of reactive N, and higher temperatures, on DOC production in different soils. Modelled patterns of DOC change generally agreed favourably with measurements collated over 10-20 years, but differed markedly between sites. While the acidifying effect of sulphur deposition appeared to be the predominant control on the observed soil water DOC trends in all the soils considered other than a blanket peat, the model suggested that over the long term, the effects of nitrogen deposition on N-limited soils may have been sufficient to elevate the DOC recovery trajectory significantly. The second most influential cause of rising DOC in the model simulations was N deposition in ecosystems that are N-limited and respond with stimulated plant growth. Although non-marine chloride deposition made some contribution to acidification and recovery, it was not amongst the main drivers of DOC change. Warming had almost no effect on modelled historic DOC trends, but may prove to be a significant driver of DOC in future via its influence on nutrient availability and productivity. This suggests that current and future DOC concentrations could also exceed preindustrial levels due to the increased productivity of N enriched ecosystems, having important implications for drinking water catchment management and the setting and pursuit of appropriate restoration targets.

76 FR 36511 - Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab; Amendment 3

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-22

...-BA22 Fisheries of the Northeastern United States; Atlantic Deep-Sea Red Crab; Amendment 3 AGENCY... the Atlantic Deep-Sea Red Crab Fishery Management Plan (FMP) (Amendment 3), incorporating a draft... current trap limit regulations state that red crab may not be harvested from gear other than a marked red...

77 FR 44214 - Essential Fish Habitat Components of Fishery Management Plans; 5-Year Review

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-27

... herring, skates, Atlantic salmon, and Atlantic deep- sea red crab. The Council is seeking comments about removing the range of alternatives pertaining to deep-sea corals from this action and developing them as a... effects on deep-sea corals developed under the authority granted in the fishery management plan (FMP...

Colonization of the deep sea by fishes

PubMed Central

Priede, I G; Froese, R

2013-01-01

Analysis of maximum depth of occurrence of 11 952 marine fish species shows a global decrease in species number (N) with depth (x; m): log10N = −0·000422x + 3·610000 (r2 = 0·948). The rate of decrease is close to global estimates for change in pelagic and benthic biomass with depth (−0·000430), indicating that species richness of fishes may be limited by food energy availability in the deep sea. The slopes for the Classes Myxini (−0·000488) and Actinopterygii (−0·000413) follow this trend but Chondrichthyes decrease more rapidly (−0·000731) implying deficiency in ability to colonize the deep sea. Maximum depths attained are 2743, 4156 and 8370 m for Myxini, Chondrichthyes and Actinopterygii, respectively. Endemic species occur in abundance at 7–7800 m depth in hadal trenches but appear to be absent from the deepest parts of the oceans, >9000 m deep. There have been six global oceanic anoxic events (OAE) since the origin of the major fish taxa in the Devonian c. 400 million years ago (mya). Colonization of the deep sea has taken place largely since the most recent OAE in the Cretaceous 94 mya when the Atlantic Ocean opened up. Patterns of global oceanic circulation oxygenating the deep ocean basins became established coinciding with a period of teleost diversification and appearance of the Acanthopterygii. Within the Actinopterygii, there is a trend for greater invasion of the deep sea by the lower taxa in accordance with the Andriashev paradigm. Here, 31 deep-sea families of Actinopterygii were identified with mean maximum depth >1000 m and with >10 species. Those with most of their constituent species living shallower than 1000 m are proposed as invasive, with extinctions in the deep being continuously balanced by export of species from shallow seas. Specialized families with most species deeper than 1000 m are termed deep-sea endemics in this study; these appear to persist in the deep by virtue of global distribution enabling recovery from regional extinctions. Deep-sea invasive families such as Ophidiidae and Liparidae make the greatest contribution to fish fauna at depths >6000 m. PMID:24298950

A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents

USGS Publications Warehouse

Reysenbach, A.-L.; Liu, Yajing; Banta, A.B.; Beveridge, T.J.; Kirshtein, J.D.; Schouten, S.; Tivey, M.K.; Von Damm, Karen L.; Voytek, M.A.

2006-01-01

Deep-sea hydrothermal vents are important in global biogeochemical cycles, providing biological oases at the sea floor that are supported by the thermal and chemical flux from the Earth's interior. As hot, acidic and reduced hydrothermal fluids mix with cold, alkaline and oxygenated sea water, minerals precipitate to form porous sulphide-sulphate deposits. These structures provide microhabitats for a diversity of prokaryotes that exploit the geochemical and physical gradients in this dynamic ecosystem. It has been proposed that fluid pH in the actively venting sulphide structures is generally low (pH < 4.5), yet no extreme thermoacidophile has been isolated from vent deposits. Culture-independent surveys based on ribosomal RNA genes from deep-sea hydrothermal deposits have identified a widespread euryarchaeotal lineage, DHVE2 (deep-sea hydrothermal vent euryarchaeotic 2). Despite the ubiquity and apparent deep-sea endemism of DHVE2, cultivation of this group has been unsuccessful and thus its metabolism remains a mystery. Here we report the isolation and cultivation of a member of the DHVE2 group, which is an obligate thermoacidophilic sulphur- or iron-reducing heterotroph capable of growing from pH 3.3 to 5.8 and between 55 and 75??C. In addition, we demonstrate that this isolate constitutes up to 15% of the archaeal population, providing evidence that thermoacidophiles may be key players in the sulphur and iron cycling at deep-sea vents. ?? 2006 Nature Publishing Group.

Stakeholder perspectives on the importance of rare-species research for deep-sea environmental management

NASA Astrophysics Data System (ADS)

Turner, Phillip J.; Campbell, Lisa M.; Van Dover, Cindy L.

2017-07-01

The apparent prevalence of rare species (rarity) in the deep sea is a concern for environmental management and conservation of biodiversity. Rare species are often considered at risk of extinction and, in terrestrial and shallow water environments, have been shown to play key roles within an ecosystem. In the deep-sea environment, current research focuses primarily on abundant species and deep-sea stakeholders are questioning the importance of rare species in ecosystem functioning. This study asks whether deep-sea stakeholders (primarily scientists) view rare-species research as a priority in guiding environmental management. Delphi methodology (i.e., an iterative survey approach) was used to understand views about whether or not 'deep-sea scientists should allocate more resources to research on rare species in the deep sea, even if this means less resources might be available for abundant-species research.' Results suggest little consensus regarding the prioritization of resources for rare-species research. From Survey 1 to Survey 3, the average participant response shifted toward a view that rare-species research is not a priority if it comes at a cost to research on abundant species. Participants pointed to the need for a balanced approach and highlighted knowledge gaps about even the most fundamental questions, including whether rare species are truly 'rare' or simply under-sampled. Participants emphasized the lack of basic biological knowledge for rare and abundant species, particularly abundant meio- and microscopic species, as well as uncertainty in the roles rare and abundant species play in ecosystem processes. Approaches that jointly consider the role of rare and abundant species in ecosystem functioning (e.g., biological trait analysis) may help to clarify the extent to which rare species need to be incorporated into deep-sea environment management in order to maintain ecosystem functioning.

North Atlantic deep water formation and AMOC in CMIP5 models

NASA Astrophysics Data System (ADS)

Heuzé, Céline; Wåhlin, Anna

2017-04-01

North Atlantic deep water formation processes and properties in climate models are indicative of their ability to simulate future ocean circulation, ventilation, carbon and heat uptake, and sea level rise. Historical time series of temperature, salinity, sea ice concentration and ocean transport in the North Atlantic subpolar gyre and Nordic Seas from 23 CMIP5 (Climate Model Intercomparison Project, phase 5) models are compared with observations to reveal the causes and consequences of North Atlantic deep water formation in models. Deep convection occurs at the sea ice edge and is most realistic in models with accurate sea ice extent, mostly those using the CICE model. The trigger of deep convection varies among models; for one third it is intense surface cooling only, while the remaining two thirds also need upward mixing of subsurface warm salty water. The models with the most intense deep convection have the most accurate deep water properties, which are warmer and fresher than in the other models. They also have the strongest Atlantic Meridional Overturning Circulation (AMOC). For over half of the models, 40% of the variability of the AMOC is explained by the volumes of deep water produced in the subpolar gyre and Nordic Seas, with 3 and 4 years lag respectively. Understanding the dynamical drivers of the AMOC in models is key to realistically forecast a possible slow down and its consequences on the global circulation and marine life.

Diversity in deep-sea benthic macrofauna: the importance of local ecology, the larger scale, history and the Antarctic

NASA Astrophysics Data System (ADS)

Gage, John D.

2004-07-01

High diversity in macrobenthos in the deep sea still lacks satisfactory explanation, even if this richness may not be exceptional compared to that in coastal soft sediments. Explanations have assumed a highly ecologically interactive, saturated local community with co-existence controlled by either niche heterogeneity, or spatio-temporal heterogeneity embodying disturbance. All have failed to provide convincing support. Local/regional scale biodiversity relationships support the idea of local richness in macrobenthos being predominantly dependent on the larger, rather local scale. Local-scale ecological interactions seem unlikely to have overriding importance in co-existence of species in the deep sea, even for relatively abundant, 'core' species with wide distributions. Variety in observed larger-scale pattern and the strong inter-regional pattern, particularly in the poorly known southern hemisphere, seem to have a pluralistic causation. These include regional-scale barriers and extinctions (e.g., Arctic), and ongoing adaptive zone re-colonisation (e.g., Mediterranean), along with other historical constraints on speciation and migration of species caused by changes in ocean and ocean-basin geometry. At the global scale lack of knowledge of the Antarctic deep sea, for example, blocks coherent understanding of latitudinal species diversity gradients. We need to reconcile emerging understanding of large-scale historical variability in the deep-sea environment—with massive extinctions among microfossil indicators as recently as the Pliocene—to results from cladistic studies indicating ancient lineages, such as asellote isopods, that have evolved entirely within the deep sea. The degree to which the great age, diversity, and high degree of endemism in Antarctic shelf benthos might have enriched biodiversity in the adjacent deep seas basins remains unclear. Basin confluence with the Atlantic, Indian and Pacific Oceans may have encouraged northwards dispersion of species from and into the deep Antarctic basins so that any regional identity is superficial. Interpretation of the Antarctic deep sea as a diversity pump for global deep-sea biodiversity may simply reflect re-colonisation, via basin confluence, of northern hemisphere areas impoverished by the consequences of rapid environmental change during the Quaternary.

A Proposed Uniaxial Compression Test for High Strength Ceramics

DTIC Science & Technology

1989-09-01

is lost and catastrophic collapse ensues. The origin of the microcracks may be microplasticity in the form of twinning, 2 or existing flaws such as...Redstone Arsenal, AL 35898-5241 1 ATTN: AIR-O3PAF 1 ATTN: AMSMI-RD-CS-R/Doc 1 AIR-5164J, LT COL J. Sebolka 1 AMSMI-RLM 1 SEA -OSM, Dr. Alex Kaznoff I... SEA -O5MB, LCDR W. M. Elger Commander, U.S. Armament, Munitions and Chemical 1 SEA -05R 25, C. Zanis Command, Dover, NJ 07801 2 ATTN: Technical Library

Macrofouling of deep-sea instrumentation after three years at 3690 m depth in the Charlie Gibbs fracture zone, mid-Atlantic ridge, with emphasis on hydroids (Cnidaria: Hydrozoa)

NASA Astrophysics Data System (ADS)

Blanco, R.; Shields, M. A.; Jamieson, A. J.

2013-12-01

Macrofouling is a common problem when deploying underwater instrumentation for long periods of time. It is a problem which can effect scientific experiments and monitoring missions though the creation of artificial reefs (thus increasing local biological activity) and reduce the quality of scientific data. Macrofouling is an issue typically considered to be restricted to the photic zones and is absent or negligible in the deep sea. To the contrary, the recovery of an accidentally lost deep-sea lander after 3 years submergence at 3960 m on the Mid-Atlantic Ridge (North Atlantic) revealed dense colonisation of macrofouling organisms. These organisms were found attached to all surfaces of the lander regardless of orientation and materials. The occurrence of such deep-sea macrofouling should be carefully investigated given the recent developments in long-term deep-sea observatory networks.

Winter to spring variations of chromophoric dissolved organic matter in a temperate estuary (Po River, northern Adriatic Sea).

PubMed

Berto, D; Giani, M; Savelli, F; Centanni, E; Ferrari, C R; Pavoni, B

2010-07-01

The light absorbing fraction of dissolved organic carbon (DOC), known as chromophoric dissolved organic matter (CDOM) showed wide seasonal variations in the temperate estuarine zone in front of the Po River mouth. DOC concentrations increased from winter through spring mainly as a seasonal response to increasing phytoplankton production and thermohaline stratification. The monthly dependence of the CDOM light absorption by salinity and chlorophyll a concentrations was explored. In 2003, neither DOC nor CDOM were linearly correlated with salinity, due to an exceptionally low Po river inflow. Though the CDOM absorbance coefficients showed a higher content of chromophoric dissolved organic matter in 2004 with respect to 2003, the spectroscopic features confirmed that the qualitative nature of CDOM was quite similar in both years. CDOM and DOC underwent a conservative mixing, only after relevant Po river freshets, and a change in optical features with an increase of the specific absorption coefficient was observed, suggesting a prevailing terrestrial origin of dissolved organic matter. Published by Elsevier Ltd.

Impacts on the deep-sea ecosystem by a severe coastal storm.

PubMed

Sanchez-Vidal, Anna; Canals, Miquel; Calafat, Antoni M; Lastras, Galderic; Pedrosa-Pàmies, Rut; Menéndez, Melisa; Medina, Raúl; Company, Joan B; Hereu, Bernat; Romero, Javier; Alcoverro, Teresa

2012-01-01

Major coastal storms, associated with strong winds, high waves and intensified currents, and occasionally with heavy rains and flash floods, are mostly known because of the serious damage they can cause along the shoreline and the threats they pose to navigation. However, there is a profound lack of knowledge on the deep-sea impacts of severe coastal storms. Concurrent measurements of key parameters along the coast and in the deep-sea are extremely rare. Here we present a unique data set showing how one of the most extreme coastal storms of the last decades lashing the Western Mediterranean Sea rapidly impacted the deep-sea ecosystem. The storm peaked the 26(th) of December 2008 leading to the remobilization of a shallow-water reservoir of marine organic carbon associated with fine particles and resulting in its redistribution across the deep basin. The storm also initiated the movement of large amounts of coarse shelf sediment, which abraded and buried benthic communities. Our findings demonstrate, first, that severe coastal storms are highly efficient in transporting organic carbon from shallow water to deep water, thus contributing to its sequestration and, second, that natural, intermittent atmospheric drivers sensitive to global climate change have the potential to tremendously impact the largest and least known ecosystem on Earth, the deep-sea ecosystem.

Impacts on the Deep-Sea Ecosystem by a Severe Coastal Storm

PubMed Central

Sanchez-Vidal, Anna; Canals, Miquel; Calafat, Antoni M.; Lastras, Galderic; Pedrosa-Pàmies, Rut; Menéndez, Melisa; Medina, Raúl; Company, Joan B.; Hereu, Bernat; Romero, Javier; Alcoverro, Teresa

2012-01-01

Major coastal storms, associated with strong winds, high waves and intensified currents, and occasionally with heavy rains and flash floods, are mostly known because of the serious damage they can cause along the shoreline and the threats they pose to navigation. However, there is a profound lack of knowledge on the deep-sea impacts of severe coastal storms. Concurrent measurements of key parameters along the coast and in the deep-sea are extremely rare. Here we present a unique data set showing how one of the most extreme coastal storms of the last decades lashing the Western Mediterranean Sea rapidly impacted the deep-sea ecosystem. The storm peaked the 26th of December 2008 leading to the remobilization of a shallow-water reservoir of marine organic carbon associated with fine particles and resulting in its redistribution across the deep basin. The storm also initiated the movement of large amounts of coarse shelf sediment, which abraded and buried benthic communities. Our findings demonstrate, first, that severe coastal storms are highly efficient in transporting organic carbon from shallow water to deep water, thus contributing to its sequestration and, second, that natural, intermittent atmospheric drivers sensitive to global climate change have the potential to tremendously impact the largest and least known ecosystem on Earth, the deep-sea ecosystem. PMID:22295084

Climate, carbon cycling, and deep-ocean ecosystems.

PubMed

Smith, K L; Ruhl, H A; Bett, B J; Billett, D S M; Lampitt, R S; Kaufmann, R S

2009-11-17

Climate variation affects surface ocean processes and the production of organic carbon, which ultimately comprises the primary food supply to the deep-sea ecosystems that occupy approximately 60% of the Earth's surface. Warming trends in atmospheric and upper ocean temperatures, attributed to anthropogenic influence, have occurred over the past four decades. Changes in upper ocean temperature influence stratification and can affect the availability of nutrients for phytoplankton production. Global warming has been predicted to intensify stratification and reduce vertical mixing. Research also suggests that such reduced mixing will enhance variability in primary production and carbon export flux to the deep sea. The dependence of deep-sea communities on surface water production has raised important questions about how climate change will affect carbon cycling and deep-ocean ecosystem function. Recently, unprecedented time-series studies conducted over the past two decades in the North Pacific and the North Atlantic at >4,000-m depth have revealed unexpectedly large changes in deep-ocean ecosystems significantly correlated to climate-driven changes in the surface ocean that can impact the global carbon cycle. Climate-driven variation affects oceanic communities from surface waters to the much-overlooked deep sea and will have impacts on the global carbon cycle. Data from these two widely separated areas of the deep ocean provide compelling evidence that changes in climate can readily influence deep-sea processes. However, the limited geographic coverage of these existing time-series studies stresses the importance of developing a more global effort to monitor deep-sea ecosystems under modern conditions of rapidly changing climate.

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2014-07-01

Runoff from small glacier systems contains dissolved organic carbon (DOC) rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (>600 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed, and contains a significant bioreactive component (9% carbohydrates). A major source of the "bioavailable" (free carbohydrate) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (26-53%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the approximately two-fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating a supply limitation in suspended sediment in runoff. Scaled to the GrIS, the combined DOC (0.13-0.17 Tg C yr-1 (±13%)) and POC fluxes (mean = 0.36-1.52 Tg C yr-1 (±14%)) are of a similar order of magnitude to a large Arctic river system, and hence may represent an important OC source to the near-coastal North Atlantic, Greenland and Labrador seas.

The formation of Greenland Sea Deep Water: double diffusion or deep convection?

NASA Astrophysics Data System (ADS)

Clarke, R. Allyn; Swift, James H.; Reid, Joseph L.; Koltermann, K. Peter

1990-09-01

An examination of the extensive hydrographic data sets collected by C.S.S. Hudson and F.S. Meteor in the Norwegian and Greenland Seas during February-June 1982 reveals property distributions and circulation patterns broadly similar to those seen in earlier data sets. These data sets, however, reveal the even stronger role played by topography, with evidence of separate circulation patterns and separate water masses in each of the deep basins. The high precision temperature, salinity and oxygen data obtained reveals significant differences in the deep and bottom waters found in the various basins of the Norwegian and Greenland Seas. A comparison of the 1982 data set with earlier sets shows that the renewal of Greenland Sea Deep Water must have taken place sometime over the last decade; however there is no evidence that deep convective renewal of any of the deep and bottom waters in this region was taking place at the time of the observations. The large-scale density fields, however, do suggest that deep convection to the bottom is most likely to occure in the Greenland Basin due to its deep cyclonic circulation. The hypothesis that Greenland Sea Deep Water (GSDW) is formed through dipycnal mixing processes acting on the warm salty core of Atlantic Water entering the Greenland Sea is examined. θ-S correlations and oxygen concentrations suggest that the salinity maxima in the Greenland Sea are the product of at least two separate mixing processes, not the hypothesized single mixing process leading to GSDW. A simple one-dimensional mixed layer model with ice growth and decay demonstrates that convective renewal of GSDW would have occurred within the Greenland Sea had the winter been a little more severe. The new GSDW produced would have only 0.003 less salt and less than 0.04 ml 1 -1 greater oxygen concentration than that already in the basin. Consequently, detection of whether new deep water has been produced following a winter cooling season could be difficult even with the best of modern accuracy.

Unexpected Positive Buoyancy in Deep Sea Sharks, Hexanchus griseus, and a Echinorhinus cookei

PubMed Central

Nakamura, Itsumi; Meyer, Carl G.; Sato, Katsufumi

2015-01-01

We do not expect non air-breathing aquatic animals to exhibit positive buoyancy. Sharks, for example, rely on oil-filled livers instead of gas-filled swim bladders to increase their buoyancy, but are nonetheless ubiquitously regarded as either negatively or neutrally buoyant. Deep-sea sharks have particularly large, oil-filled livers, and are believed to be neutrally buoyant in their natural habitat, but this has never been confirmed. To empirically determine the buoyancy status of two species of deep-sea sharks (bluntnose sixgill sharks, Hexanchus griseus, and a prickly shark, Echinorhinus cookei) in their natural habitat, we used accelerometer-magnetometer data loggers to measure their swimming performance. Both species of deep-sea sharks showed similar diel vertical migrations: they swam at depths of 200–300 m at night and deeper than 500 m during the day. Ambient water temperature was around 15°C at 200–300 m but below 7°C at depths greater than 500 m. During vertical movements, all deep-sea sharks showed higher swimming efforts during descent than ascent to maintain a given swimming speed, and were able to glide uphill for extended periods (several minutes), indicating that these deep-sea sharks are in fact positively buoyant in their natural habitats. This positive buoyancy may adaptive for stealthy hunting (i.e. upward gliding to surprise prey from underneath) or may facilitate evening upward migrations when muscle temperatures are coolest, and swimming most sluggish, after spending the day in deep, cold water. Positive buoyancy could potentially be widespread in fish conducting daily vertical migration in deep-sea habitats. PMID:26061525

Unexpected Positive Buoyancy in Deep Sea Sharks, Hexanchus griseus, and a Echinorhinus cookei.

PubMed

Nakamura, Itsumi; Meyer, Carl G; Sato, Katsufumi

2015-01-01

We do not expect non air-breathing aquatic animals to exhibit positive buoyancy. Sharks, for example, rely on oil-filled livers instead of gas-filled swim bladders to increase their buoyancy, but are nonetheless ubiquitously regarded as either negatively or neutrally buoyant. Deep-sea sharks have particularly large, oil-filled livers, and are believed to be neutrally buoyant in their natural habitat, but this has never been confirmed. To empirically determine the buoyancy status of two species of deep-sea sharks (bluntnose sixgill sharks, Hexanchus griseus, and a prickly shark, Echinorhinus cookei) in their natural habitat, we used accelerometer-magnetometer data loggers to measure their swimming performance. Both species of deep-sea sharks showed similar diel vertical migrations: they swam at depths of 200-300 m at night and deeper than 500 m during the day. Ambient water temperature was around 15°C at 200-300 m but below 7°C at depths greater than 500 m. During vertical movements, all deep-sea sharks showed higher swimming efforts during descent than ascent to maintain a given swimming speed, and were able to glide uphill for extended periods (several minutes), indicating that these deep-sea sharks are in fact positively buoyant in their natural habitats. This positive buoyancy may adaptive for stealthy hunting (i.e. upward gliding to surprise prey from underneath) or may facilitate evening upward migrations when muscle temperatures are coolest, and swimming most sluggish, after spending the day in deep, cold water. Positive buoyancy could potentially be widespread in fish conducting daily vertical migration in deep-sea habitats.

Adapting to the Deep Sea: A Fun Activity with Bioluminescence

ERIC Educational Resources Information Center

Rife, Gwynne

2006-01-01

Over the past decade, much has been learned about the ocean's secrets and especially about the creatures of the deep sea. The deepest parts of the oceans are currently the focus of many new discoveries in both the physical and biological sciences. Middle school students find the deep sea fascinating and especially seem to enjoy its mysterious and…

Further records of the deep-sea pandalid shrimp Heterocarpus chani Li, 2006 (Crustacea, Decapoda, Caridea) from southern India

PubMed Central

Yang, Chien-Hui; Kumar, Appukuttannair Biju; Chan, Tin-Yam

2017-01-01

Abstract The commercial deep-sea caridean shrimp Heterocarpus gibbosus Spence Bate, 1888 has long been recorded from India and constitutes an important part of the catches in the context of the further development of deep-sea fisheries in India. A recent survey in some deep-sea fishing ports in southern India, however, revealed that all material previously reported as “H. gibbosus” is actually a misidentification of its closely related species H. chani Li, 2006, which has only recently been reported from India. More detailed comparisons allowed the discovery of more distinctive characters between H. chani and H. gibbosus. PMID:29089843

Bathyal sea urchins of the Bahamas, with notes on covering behavior in deep sea echinoids (Echinodermata: Echinoidea)

NASA Astrophysics Data System (ADS)

Pawson, David L.; Pawson, Doris J.

2013-08-01

In a survey of the bathyal echinoderms of the Bahama Islands region using manned submersibles, approximately 200 species of echinoderms were encountered and documented; 33 species were echinoids, most of them widespread in the general Caribbean area. Three species were found to exhibit covering behavior, the piling of debris on the upper surface of the body. Active covering is common in at least 20 species of shallow-water echinoids, but it has been reliably documented previously only once in deep-sea habitats. Images of covered deep-sea species, and other species of related interest, are provided. Some of the reasons adduced in the past for covering in shallow-water species, such as reduction of incident light intensity, physical camouflage, ballast in turbulent water, protection from desiccation, presumably do not apply in bathyal species. The main reasons for covering in deep, dark, environments are as yet unknown. Some covering behavior in the deep sea may be related to protection of the genital pores, ocular plates, or madreporite. Covering in some deep-sea species may also be merely a tactile reflex action, as some authors have suggested for shallow-water species.

A New Method for Reconstructing Sea-Level and Deep-Sea-Temperature Variability over the Past 5.3 Million Years

NASA Astrophysics Data System (ADS)

Rohling, E. J.

2014-12-01

Ice volume (and hence sea level) and deep-sea temperature are key measures of global climate change. Sea level has been documented using several independent methods over the past 0.5 million years (Myr). Older periods, however, lack such independent validation; all existing records are related to deep-sea oxygen isotope (d18O) data that are influenced by processes unrelated to sea level. For deep-sea temperature, only one continuous high-resolution (Mg/Ca-based) record exists, with related sea-level estimates, spanning the past 1.5 Myr. We have recently presented a novel sea-level reconstruction, with associated estimates of deep-sea temperature, which independently validates the previous 0-1.5 Myr reconstruction and extends it back to 5.3 Myr ago. A serious of caveats applies to this new method, especially in older times of its application, as is always the case with new methods. Independent validation exercises are needed to elucidate where consistency exists, and where solutions drift away from each other. A key observation from our new method is that a large temporal offset existed during the onset of Plio-Pleistocene ice ages, between a marked cooling step at 2.73 Myr ago and the first major glaciation at 2.15 Myr ago. This observation relies on relative changes within the dataset, which are more robust than absolute values. I will discuss our method and its main caveats and avenues for improvement.

Man and the Last Great Wilderness: Human Impact on the Deep Sea

PubMed Central

Ramirez-Llodra, Eva; Tyler, Paul A.; Baker, Maria C.; Bergstad, Odd Aksel; Clark, Malcolm R.; Escobar, Elva; Levin, Lisa A.; Menot, Lenaick; Rowden, Ashley A.; Smith, Craig R.; Van Dover, Cindy L.

2011-01-01

The deep sea, the largest ecosystem on Earth and one of the least studied, harbours high biodiversity and provides a wealth of resources. Although humans have used the oceans for millennia, technological developments now allow exploitation of fisheries resources, hydrocarbons and minerals below 2000 m depth. The remoteness of the deep seafloor has promoted the disposal of residues and litter. Ocean acidification and climate change now bring a new dimension of global effects. Thus the challenges facing the deep sea are large and accelerating, providing a new imperative for the science community, industry and national and international organizations to work together to develop successful exploitation management and conservation of the deep-sea ecosystem. This paper provides scientific expert judgement and a semi-quantitative analysis of past, present and future impacts of human-related activities on global deep-sea habitats within three categories: disposal, exploitation and climate change. The analysis is the result of a Census of Marine Life – SYNDEEP workshop (September 2008). A detailed review of known impacts and their effects is provided. The analysis shows how, in recent decades, the most significant anthropogenic activities that affect the deep sea have evolved from mainly disposal (past) to exploitation (present). We predict that from now and into the future, increases in atmospheric CO2 and facets and consequences of climate change will have the most impact on deep-sea habitats and their fauna. Synergies between different anthropogenic pressures and associated effects are discussed, indicating that most synergies are related to increased atmospheric CO2 and climate change effects. We identify deep-sea ecosystems we believe are at higher risk from human impacts in the near future: benthic communities on sedimentary upper slopes, cold-water corals, canyon benthic communities and seamount pelagic and benthic communities. We finalise this review with a short discussion on protection and management methods. PMID:21829635

Application of Low cost Spirulina growth medium using Deep sea water

NASA Astrophysics Data System (ADS)

Lim, Dae-hack; Kim, Bong-ju; Lee, Sung-jae; Choi, Nag-chul; Park, Cheon-young

2017-04-01

Deep-sea water has a relatively constant temperature, abundant nutrients such as calcium, magnesium, nitrates, and phosphates, etc., and stable water quality, even though there might be some variations of their compositions according to collection places. Thus, deep-sea water would be a good substrate for algal growth and biomass production since it contains various nutrients, including a fluorescent red pigment, and β-carotene, etc. The aim of this study was to investigate the economics of a culture condition through comparative analysis to Spirulina platensis growth characteristic under various medium conditions for cost-effective production of Spirulina sp.. Growth experiments were performed with S. platensis under various culture medium conditions (deep sea water + SP medium). Growth tests for culture medium demonstrated that the deep sea water to SP medium ratio of 50:50(W/W) was effective in S. platensis with the maximum biomass (1.35g/L) and minimum medium making cost per production mass (133.28 KRW/g). Parameter estimation of bio-kinetics (maximum growth rate and yield) for low cost medium results showed that the maximum growth rate and yield of N, P, K were obtained under deep sea water to SP medium ratio of 50:50(W/W) of 0.057 1/day and 0.151, 0.076, 0.123, respectively. Acknowledgment : "This research was a part of the project titled 'Development of microalgae culture technique for cosmetic materials based on ocean deep sea water(20160297)', funded by the Ministry of Oceans and Fisheries, Korea."

78 FR 35018 - GB Energy Park, LLC; Notice of Preliminary Permit Application Accepted for Filing and Soliciting...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-11

... new 3,000-foot-long, 1,000-foot- wide, 50- to 75-foot-deep upper reservoir, with a surface area of 50...-foot-long, 1,000-foot- wide, 50- to 75-foot-deep lower reservoir with a surface area of 80 acres and a... instructions on the Commission's Web site http://www.ferc.gov/docs-filing/efiling.asp . Commenters can submit...

77 FR 65676 - L.S. Starrett Company; Notice of Application Accepted for Filing With the Commission, Intent To...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-30

...)(1)(iii) and the instructions on the Commission's Web site http://www.ferc.gov/docs-filing/efiling... conduit equipped with a 7-foot-high, 7-foot-wide gate; (e) a 16-foot-wide, 4-foot-deep, 200-foot-long... a 198 kW turbine generating unit; (d) a 14-foot-wide, 9-foot-deep, 100-foot-long tailrace; and (e...

Deep, diverse and definitely different: unique attributes of the world's largest ecosystem

NASA Astrophysics Data System (ADS)

Ramirez-Llodra, E.; Brandt, A.; Danovaro, R.; de Mol, B.; Escobar, E.; German, C. R.; Levin, L. A.; Martinez Arbizu, P.; Menot, L.; Buhl-Mortensen, P.; Narayanaswamy, B. E.; Smith, C. R.; Tittensor, D. P.; Tyler, P. A.; Vanreusel, A.; Vecchione, M.

2010-09-01

The deep sea, the largest biome on Earth, has a series of characteristics that make this environment both distinct from other marine and land ecosystems and unique for the entire planet. This review describes these patterns and processes, from geological settings to biological processes, biodiversity and biogeographical patterns. It concludes with a brief discussion of current threats from anthropogenic activities to deep-sea habitats and their fauna. Investigations of deep-sea habitats and their fauna began in the late 19th century. In the intervening years, technological developments and stimulating discoveries have promoted deep-sea research and changed our way of understanding life on the planet. Nevertheless, the deep sea is still mostly unknown and current discovery rates of both habitats and species remain high. The geological, physical and geochemical settings of the deep-sea floor and the water column form a series of different habitats with unique characteristics that support specific faunal communities. Since 1840, 28 new habitats/ecosystems have been discovered from the shelf break to the deep trenches and discoveries of new habitats are still happening in the early 21st century. However, for most of these habitats the global area covered is unknown or has been only very roughly estimated; an even smaller - indeed, minimal - proportion has actually been sampled and investigated. We currently perceive most of the deep-sea ecosystems as heterotrophic, depending ultimately on the flux on organic matter produced in the overlying surface ocean through photosynthesis. The resulting strong food limitation thus shapes deep-sea biota and communities, with exceptions only in reducing ecosystems such as inter alia hydrothermal vents or cold seeps. Here, chemoautolithotrophic bacteria play the role of primary producers fuelled by chemical energy sources rather than sunlight. Other ecosystems, such as seamounts, canyons or cold-water corals have an increased productivity through specific physical processes, such as topographic modification of currents and enhanced transport of particles and detrital matter. Because of its unique abiotic attributes, the deep sea hosts a specialized fauna. Although there are no phyla unique to deep waters, at lower taxonomic levels the composition of the fauna is distinct from that found in the upper ocean. Amongst other characteristic patterns, deep-sea species may exhibit either gigantism or dwarfism, related to the decrease in food availability with depth. Food limitation on the seafloor and water column is also reflected in the trophic structure of heterotrophic deep-sea communities, which are adapted to low energy availability. In most of these heterotrophic habitats, the dominant megafauna is composed of detritivores, while filter feeders are abundant in habitats with hard substrata (e.g. mid-ocean ridges, seamounts, canyon walls and coral reefs). Chemoautotrophy through symbiotic relationships is dominant in reducing habitats. Deep-sea biodiversity is among of the highest on the planet, mainly composed of macro and meiofauna, with high evenness. This is true for most of the continental margins and abyssal plains with hot spots of diversity such as seamounts or cold-water corals. However, in some ecosystems with particularly "extreme" physicochemical processes (e.g. hydrothermal vents), biodiversity is low but abundance and biomass are high and the communities are dominated by a few species. Two large-scale diversity patterns have been discussed for deep-sea benthic communities. First, a unimodal relationship between diversity and depth is observed, with a peak at intermediate depths (2000-3000 m), although this is not universal and particular abiotic processes can modify the trend. Secondly, a poleward trend of decreasing diversity has been discussed, but this remains controversial and studies with larger and more robust data sets are needed. Because of the paucity in our knowledge of habitat coverage and species composition, biogeographic studies are mostly based on regional data or on specific taxonomic groups. Recently, global biogeographic provinces for the pelagic and benthic deep ocean have been described, using environmental and, where data were available, taxonomic information. This classification described 30 pelagic provinces and 38 benthic provinces divided into 4 depth ranges, as well as 10 hydrothermal vent provinces. One of the major issues faced by deep-sea biodiversity and biogeographical studies is related to the high number of species new to science that are collected regularly, together with the slow description rates for these new species. Taxonomic coordination at the global scale is particularly difficult, but is essential if we are to analyse large diversity and biogeographic trends.

Sources, behaviors and degradation of dissolved organic matter in the East China Sea

NASA Astrophysics Data System (ADS)

Chen, Yan; Yang, Gui-Peng; Liu, Li; Zhang, Peng-Yan; Leng, Wei-Song

2016-03-01

Concentrations of dissolved organic carbon (DOC), dissolved inorganic nitrogen (DIN), dissolved organic nitrogen (DON) and its major compound classes-total hydrolysable amino acids (THAA) were measured at 4 cross-shelf transects of the East China Sea in July 2011. Surface concentrations of DOC, DIN, DON and THAA at the nearshore stations were mostly in excess of those found at the offshore sites, indicating either substantial autochthonous production or allochthonous inputs from the Changjiang River. The vertical distributions of DOC, DON and THAA showed similar trends with higher values in the surface layer, whereas the elevated concentrations of DIN were observed in the bottom layer. Major constituents of THAA presented in the study area were glycine, serine, alanine, glutamic acid, aspartic acid and valine. The mole percentages of neutral amino acids increased from surface water to bottom water, whereas acidic and hydroxy amino acids decreased with the water depth. Concentrations of DOC and THAA were negatively correlated to the ΔDIN values (the difference between the real concentration and theoretical concentration), respectively, indicating the coupling relation between dissolved organic matter (DOM) remineralization and nutrient regeneration in the water column. The C/N ratios in the water column exhibited different characteristics with elevated values appearing in the surface and bottom layers. Box and whisker plots showed that both degradation index (DI) values and THAA yields displayed a decreasing trend from the surface layer to the bottom layer, implying increasing degradation with the water depth. Our data revealed that glycine and alanine increased in relative abundance with decreasing DI, while tyrosine, valine, phenylalanine and isoleucine increased with increasing DI.

Sedimentary sources of old high molecular weight dissolved organic carbon from the ocean margin benthic nepheloid layer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, L. Santschi, P.H.

2000-02-01

Average {sup 14}C ages of dissolved organic carbon (DOC) in the ocean are 3--6,000 years, and are influenced by old DOC from continental margins. However, sources of DOC from terrestrial, autochthonous, and sedimentary organic carbon seem to be too young to be responsible for the old DOC observed in the ocean. Since colloidal organic carbon (COC, i.e., high molecular weight DOC), which is chemically very similar to that of bulk DOC, can be effectively isolated from seawater using cross-flow ultrafiltration, it can hold clues to sources and pathways of DOC turnover in the ocean. Radiocarbon measurements on COC in themore » water column and benthic nepheloid layer (BNL) from two continental margin areas (the Middle Atlantic Bight and the Gulf of Mexico) and controlled laboratory experiments were carried out to study sources of old DOC in the ocean margin areas. Vertical distributions of suspended particulate matter (SPM), particulate organic carbon (POC), nitrogen (PON), and DOC in the water column and bottom waters near the sediment-water interface all demonstrate a well developed benthic nepheloid layer in both ocean margin areas. COC from the BNL was much older than COC from the overlying water column. These results, together with strong concentration gradients of SPM, POC, PON, and DOC, suggest a sedimentary source for organic carbon species and possibly for old COC as well in BNL waters. This is confirmed by the results from controlled laboratory experiments. The heterogeneity of {Delta}{sup 14}C signatures in bulk SOC thus points to a preferential release of old organic components from sediment resuspension, which can be the transport mechanism of the old benthic COC observed in ocean margin areas. Old COC from continental margin nepheloid layers may thus be a potential source of old DOC to the deep ocean.« less

Deep-Sea Phylogeographic Structure Shaped by Paleoenvironmental Changes and Ongoing Ocean Currents Around the Sea of Japan in a Crangonid Shrimp, Argis lar.

PubMed

Fujita, Junta; Drumm, David T; Iguchi, Akira; Ueda, Yuji; Yamashita, Yuho; Ito, Masaki; Tominaga, Osamu; Kai, Yoshiaki; Ueno, Masahiro; Yamashita, Yoh

2017-10-01

The deep-sea crangonid shrimp, Argis lar, is a highly abundant species from the northern Pacific Ocean. We investigated its phylogeographic and demographic structure across the species' extensive range, using mitochondrial DNA sequence variation to evaluate the impact of deep-sea paleoenvironmental dynamics in the Sea of Japan on population histories. The haplotype network detected three distinct lineages with allopatric isolation, which roughly corresponded to the Sea of Japan (Lineage A), the northwestern Pacific off the Japanese Archipelago (Lineage B), and the Bering Sea/Gulf of Alaska (Lineage C). Lineage A showed relatively low haplotype and nucleotide diversity, a significantly negative value of Tajima's D, and a star-shaped network, suggesting that anoxic bottom-water in the Sea of Japan over the last glacial period may have brought about a reduction in the Sea of Japan population. Furthermore, unexpectedly, the distributions of Lineage A and B were closely related to the pathways of the two ocean currents, especially along the Sanriku Coast. This result indicated that A. lar could disperse across shallow straits through the ocean current, despite their deep-sea adult habitat. Bayesian inference of divergence time revealed that A. lar separated into three lineages approximately 1 million years before present (BP) in the Pleistocene, and then had been influenced by deep-sea paleoenvironmental change in the Sea of Japan during the last glacial period, followed by a more recent larval dispersal with the ocean current since ca. 6 kilo years BP.

The deep sea is a major sink for microplastic debris

PubMed Central

Woodall, Lucy C.; Sanchez-Vidal, Anna; Canals, Miquel; Paterson, Gordon L.J.; Coppock, Rachel; Sleight, Victoria; Calafat, Antonio; Rogers, Alex D.; Narayanaswamy, Bhavani E.; Thompson, Richard C.

2014-01-01

Marine debris, mostly consisting of plastic, is a global problem, negatively impacting wildlife, tourism and shipping. However, despite the durability of plastic, and the exponential increase in its production, monitoring data show limited evidence of concomitant increasing concentrations in marine habitats. There appears to be a considerable proportion of the manufactured plastic that is unaccounted for in surveys tracking the fate of environmental plastics. Even the discovery of widespread accumulation of microscopic fragments (microplastics) in oceanic gyres and shallow water sediments is unable to explain the missing fraction. Here, we show that deep-sea sediments are a likely sink for microplastics. Microplastic, in the form of fibres, was up to four orders of magnitude more abundant (per unit volume) in deep-sea sediments from the Atlantic Ocean, Mediterranean Sea and Indian Ocean than in contaminated sea-surface waters. Our results show evidence for a large and hitherto unknown repository of microplastics. The dominance of microfibres points to a previously underreported and unsampled plastic fraction. Given the vastness of the deep sea and the prevalence of microplastics at all sites we investigated, the deep-sea floor appears to provide an answer to the question—where is all the plastic? PMID:26064573

The deep sea is a major sink for microplastic debris.

PubMed

Woodall, Lucy C; Sanchez-Vidal, Anna; Canals, Miquel; Paterson, Gordon L J; Coppock, Rachel; Sleight, Victoria; Calafat, Antonio; Rogers, Alex D; Narayanaswamy, Bhavani E; Thompson, Richard C

2014-12-01

Marine debris, mostly consisting of plastic, is a global problem, negatively impacting wildlife, tourism and shipping. However, despite the durability of plastic, and the exponential increase in its production, monitoring data show limited evidence of concomitant increasing concentrations in marine habitats. There appears to be a considerable proportion of the manufactured plastic that is unaccounted for in surveys tracking the fate of environmental plastics. Even the discovery of widespread accumulation of microscopic fragments (microplastics) in oceanic gyres and shallow water sediments is unable to explain the missing fraction. Here, we show that deep-sea sediments are a likely sink for microplastics. Microplastic, in the form of fibres, was up to four orders of magnitude more abundant (per unit volume) in deep-sea sediments from the Atlantic Ocean, Mediterranean Sea and Indian Ocean than in contaminated sea-surface waters. Our results show evidence for a large and hitherto unknown repository of microplastics. The dominance of microfibres points to a previously underreported and unsampled plastic fraction. Given the vastness of the deep sea and the prevalence of microplastics at all sites we investigated, the deep-sea floor appears to provide an answer to the question-where is all the plastic?

Landscape controls on dissolved organic carbon export from watersheds of the British Columbia outer-coast

NASA Astrophysics Data System (ADS)

Giesbrecht, I.; Tank, S. E.; Frazer, G. W.; Gonzalez Arriola, S.; Korver, M.; Floyd, B. C.; Oliver, A. A.; Lertzman, K. P.

2016-12-01

Global models suggest that the Pacific Coastal Temperate Rainforest of North America (PCTR) exports significant quantities of dissolved organic carbon (DOC) to the coastal ocean. This aquatic flux from land to sea has implications for marine ecosystems and regional carbon budgets. However, DOC concentrations and flux estimates vary substantially across watersheds and drivers of spatial variation are poorly described for this region. For an outer-coast area of the PCTR, with among the highest per unit area DOC yields in the world (Oliver et al. in prep.), we describe and model landscape controls on DOC exports to the coastal ocean. In 2015 we collected three rounds of synoptic samples on Calvert Island, observing a nine-fold variation in DOC concentration (3.8 - 34.3 mg/L) across 59 watersheds that range in size from 0.26 to 21.12 km2 and reach a maximum elevation of 1012 m. We use standard ecosystem maps (Province of BC), LiDAR and other remote sensing data to measure watershed attributes. We use freshwater cation concentrations to explore geochemical signals of bedrock and surficial deposits that may be poorly represented by available geospatial data. We examine the role of topography, climate, waterbodies, geology and the local ecosystem mosaic in controlling DOC concentration and flux. An improved model of spatial controls on freshwater DOC export from the outer-coast of the PCTR will inform regional carbon modeling efforts and enhance our understanding of ecosystem processes at the coastal margin.

Diverse deep-sea fungi from the South China Sea and their antimicrobial activity.

PubMed

Zhang, Xiao-Yong; Zhang, Yun; Xu, Xin-Ya; Qi, Shu-Hua

2013-11-01

We investigated the diversity of fungal communities in nine different deep-sea sediment samples of the South China Sea by culture-dependent methods followed by analysis of fungal internal transcribed spacer (ITS) sequences. Although 14 out of 27 identified species were reported in a previous study, 13 species were isolated from sediments of deep-sea environments for the first report. Moreover, these ITS sequences of six isolates shared 84-92 % similarity with their closest matches in GenBank, which suggested that they might be novel phylotypes of genera Ajellomyces, Podosordaria, Torula, and Xylaria. The antimicrobial activities of these fungal isolates were explored using a double-layer technique. A relatively high proportion (56 %) of fungal isolates exhibited antimicrobial activity against at least one pathogenic bacterium or fungus among four marine pathogenic microbes (Micrococcus luteus, Pseudoaltermonas piscida, Aspergerillus versicolor, and A. sydowii). Out of these antimicrobial fungi, the genera Arthrinium, Aspergillus, and Penicillium exhibited antibacterial and antifungal activities, while genus Aureobasidium displayed only antibacterial activity, and genera Acremonium, Cladosporium, Geomyces, and Phaeosphaeriopsis displayed only antifungal activity. To our knowledge, this is the first report to investigate the diversity and antimicrobial activity of culturable deep-sea-derived fungi in the South China Sea. These results suggest that diverse deep-sea fungi from the South China Sea are a potential source for antibiotics' discovery and further increase the pool of fungi available for natural bioactive product screening.

Potential contribution of surface-dwelling Sargassum algae to deep-sea ecosystems in the southern North Atlantic

NASA Astrophysics Data System (ADS)

Baker, Philip; Minzlaff, Ulrike; Schoenle, Alexandra; Schwabe, Enrico; Hohlfeld, Manon; Jeuck, Alexandra; Brenke, Nils; Prausse, Dennis; Rothenbeck, Marcel; Brix, Saskia; Frutos, Inmaculada; Jörger, Katharina M.; Neusser, Timea P.; Koppelmann, Rolf; Devey, Colin; Brandt, Angelika; Arndt, Hartmut

2018-02-01

Deep-sea ecosystems, limited by their inability to use primary production as a source of carbon, rely on other sources to maintain life. Sedimentation of organic carbon into the deep sea has been previously studied, however, the high biomass of sedimented Sargassum algae discovered during the VEMA Transit expedition in 2014/2015 to the southern North Atlantic, and its potential as a regular carbon input, has been an underestimated phenomenon. To determine the potential for this carbon flux, a literature survey of previous studies that estimated the abundance of surface water Sargassum was conducted. We compared these estimates with quantitative analyses of sedimented Sargassum appearing on photos taken with an autonomous underwater vehicle (AUV) directly above the abyssal sediment during the expedition. Organismal communities associated to Sargassum fluitans from surface waters were investigated and Sargassum samples collected from surface waters and the deep sea were biochemically analyzed (fatty acids, stable isotopes, C:N ratios) to determine degradation potential and the trophic significance within deep-sea communities. The estimated Sargassum biomass (fresh weight) in the deep sea (0.07-3.75 g/m2) was several times higher than that estimated from surface waters in the North Atlantic (0.024-0.84 g/m2). Biochemical analysis showed degradation of Sargassum occurring during sedimentation or in the deep sea, however, fatty acid and stable isotope analysis did not indicate direct trophic interactions between the algae and benthic organisms. Thus, it is assumed that components of the deep-sea microbial food web form an important link between the macroalgae and larger benthic organisms. Evaluation of the epifauna showed a diverse nano- micro-, meio, and macrofauna on surface Sargassum and maybe transported across the Atlantic, but we had no evidence for a vertical exchange of fauna components. The large-scale sedimentation of Sargassum forms an important trophic link between surface and benthic production and has to be further considered in the future as a regular carbon input to the deep-sea floor in the North Atlantic.

Contribution of Bicarbonate Assimilation to Carbon Pool Dynamics in the Deep Mediterranean Sea and Cultivation of Actively Nitrifying and CO2-Fixing Bathypelagic Prokaryotic Consortia.

PubMed

La Cono, Violetta; Ruggeri, Gioachino; Azzaro, Maurizio; Crisafi, Francesca; Decembrini, Franco; Denaro, Renata; La Spada, Gina; Maimone, Giovanna; Monticelli, Luis S; Smedile, Francesco; Giuliano, Laura; Yakimov, Michail M

2018-01-01

Covering two-thirds of our planet, the global deep ocean plays a central role in supporting life on Earth. Among other processes, this biggest ecosystem buffers the rise of atmospheric CO 2 . Despite carbon sequestration in the deep ocean has been known for a long time, microbial activity in the meso- and bathypelagic realm via the " assimilation of bicarbonate in the dark " (ABD) has only recently been described in more details. Based on recent findings, this process seems primarily the result of chemosynthetic and anaplerotic reactions driven by different groups of deep-sea prokaryoplankton. We quantified bicarbonate assimilation in relation to total prokaryotic abundance, prokaryotic heterotrophic production and respiration in the meso- and bathypelagic Mediterranean Sea. The measured ABD values, ranging from 133 to 370 μg C m -3 d -1 , were among the highest ones reported worldwide for similar depths, likely due to the elevated temperature of the deep Mediterranean Sea (13-14°C also at abyssal depths). Integrated over the dark water column (≥200 m depth), bicarbonate assimilation in the deep-sea ranged from 396 to 873 mg C m -2 d -1 . This quantity of produced de novo organic carbon amounts to about 85-424% of the phytoplankton primary production and covers up to 62% of deep-sea prokaryotic total carbon demand. Hence, the ABD process in the meso- and bathypelagic Mediterranean Sea might substantially contribute to the inorganic and organic pool and significantly sustain the deep-sea microbial food web. To elucidate the ABD key-players, we established three actively nitrifying and CO 2 -fixing prokaryotic enrichments. Consortia were characterized by the co-occurrence of chemolithoautotrophic Thaumarchaeota and chemoheterotrophic proteobacteria. One of the enrichments, originated from Ionian bathypelagic waters (3,000 m depth) and supplemented with low concentrations of ammonia, was dominated by the Thaumarchaeota "low-ammonia-concentration" deep-sea ecotype, an enigmatic and ecologically important group of organisms, uncultured until this study.

Contribution of Bicarbonate Assimilation to Carbon Pool Dynamics in the Deep Mediterranean Sea and Cultivation of Actively Nitrifying and CO2-Fixing Bathypelagic Prokaryotic Consortia

PubMed Central

La Cono, Violetta; Ruggeri, Gioachino; Azzaro, Maurizio; Crisafi, Francesca; Decembrini, Franco; Denaro, Renata; La Spada, Gina; Maimone, Giovanna; Monticelli, Luis S.; Smedile, Francesco; Giuliano, Laura; Yakimov, Michail M.

2018-01-01

Covering two-thirds of our planet, the global deep ocean plays a central role in supporting life on Earth. Among other processes, this biggest ecosystem buffers the rise of atmospheric CO2. Despite carbon sequestration in the deep ocean has been known for a long time, microbial activity in the meso- and bathypelagic realm via the “assimilation of bicarbonate in the dark” (ABD) has only recently been described in more details. Based on recent findings, this process seems primarily the result of chemosynthetic and anaplerotic reactions driven by different groups of deep-sea prokaryoplankton. We quantified bicarbonate assimilation in relation to total prokaryotic abundance, prokaryotic heterotrophic production and respiration in the meso- and bathypelagic Mediterranean Sea. The measured ABD values, ranging from 133 to 370 μg C m−3 d−1, were among the highest ones reported worldwide for similar depths, likely due to the elevated temperature of the deep Mediterranean Sea (13–14°C also at abyssal depths). Integrated over the dark water column (≥200 m depth), bicarbonate assimilation in the deep-sea ranged from 396 to 873 mg C m−2 d−1. This quantity of produced de novo organic carbon amounts to about 85–424% of the phytoplankton primary production and covers up to 62% of deep-sea prokaryotic total carbon demand. Hence, the ABD process in the meso- and bathypelagic Mediterranean Sea might substantially contribute to the inorganic and organic pool and significantly sustain the deep-sea microbial food web. To elucidate the ABD key-players, we established three actively nitrifying and CO2-fixing prokaryotic enrichments. Consortia were characterized by the co-occurrence of chemolithoautotrophic Thaumarchaeota and chemoheterotrophic proteobacteria. One of the enrichments, originated from Ionian bathypelagic waters (3,000 m depth) and supplemented with low concentrations of ammonia, was dominated by the Thaumarchaeota “low-ammonia-concentration” deep-sea ecotype, an enigmatic and ecologically important group of organisms, uncultured until this study. PMID:29403458

Large-Scale Distribution and Activity of Prokaryotes in Deep-Sea Surface Sediments of the Mediterranean Sea and the Adjacent Atlantic Ocean

PubMed Central

Giovannelli, Donato; Molari, Massimiliano; d’Errico, Giuseppe; Baldrighi, Elisa; Pala, Claudia; Manini, Elena

2013-01-01

The deep-sea represents a substantial portion of the biosphere and has a major influence on carbon cycling and global biogeochemistry. Benthic deep-sea prokaryotes have crucial roles in this ecosystem, with their recycling of organic matter from the photic zone. Despite this, little is known about the large-scale distribution of prokaryotes in the surface deep-sea sediments. To assess the influence of environmental and trophic variables on the large-scale distribution of prokaryotes, we investigated the prokaryotic assemblage composition (Bacteria to Archaea and Euryarchaeota to Crenarchaeota ratio) and activity in the surface deep-sea sediments of the Mediterranean Sea and the adjacent North Atlantic Ocean. Prokaryotic abundance and biomass did not vary significantly across the Mediterranean Sea; however, there were depth-related trends in all areas. The abundance of prokaryotes was positively correlated with the sedimentary concentration of protein, an indicator of the quality and bioavailability of organic matter. Moving eastwards, the Bacteria contribution to the total prokaryotes decreased, which appears to be linked to the more oligotrophic conditions of the Eastern Mediterranean basins. Despite the increased importance of Archaea, the contributions of Crenarchaeota Marine Group I to the total pool was relatively constant across the investigated stations, with the exception of Matapan-Vavilov Deep, in which Euryarchaeota Marine Group II dominated. Overall, our data suggest that deeper areas of the Mediterranean Sea share more similar communities with each other than with shallower sites. Freshness and quality of sedimentary organic matter were identified through Generalized Additive Model analysis as the major factors for describing the variation in the prokaryotic community structure and activity in the surface deep-sea sediments. Longitude was also important in explaining the observed variability, which suggests that the overlying water masses might have a critical role in shaping the benthic communities. PMID:24039667

Trophic Pathways of the Mid-North Atlantic

EPA Science Inventory

Because deep-sea fisheries are increasing as coastal fisheries decline, fisheries scientists need baseline data on deep-sea ecosystems prior to further development of deep-water fisheries. We present preliminary results and ongoing efforts to characterize the trophic structure a...

Depleted deep South China Sea δ13C paleoceanographic events in response to tectonic evolution in Taiwan-Luzon Strait since Middle Miocene

NASA Astrophysics Data System (ADS)

Chen, Wen-Huang; Huang, Chi-Yue; Lin, Yen-Jun; Zhao, Quanhong; Yan, Yi; Chen, Duofu; Zhang, Xinchang; Lan, Qing; Yu, Mengming

2015-12-01

The most distinctive feature of the deep South China Sea (SCS) paleoceanography is the occurrence of long-term depleted deep-sea benthic foraminiferal δ13C values. They are lower than the global and the Pacific composite records in the last 16 Ma, especially at 13.2, 10.5, 6.5, 3.0 and 1.2-0.4 Ma. This distinct deep SCS paleoceanograhic history coincides with the subduction-collision history in the Taiwan region where waters of the West Pacific (WP) and the SCS exchange. The depleted deep-sea benthic foraminiferal δ13C events indicate that the SCS deep basin became progressively a stagnant environment in the last 16 Ma due to either closure of the connection with the WP bottom water or temporary reduction of the WP deep water flowing into the deep SCS. Both the Taiwan accretionary prism and the Luzon arc became the main tectono-morphological barriers for the WP bottom water flowing into the SCS deep basin when eastward subduction of the SCS oceanic lithosphere beneath the Philippine Sea Plate started from the Middle Miocene (18-16 Ma). This began a long-term trend of depleted SCS deep-sea benthic δ13C values in the last 16 Ma. The oblique arc-continent collision since ~6.5 Ma uplifted the Taiwan accretionary prism rapidly above sea level and further isolated the SCS from the open Pacific. The collision simultaneously causes backthrusting deformations in the North Luzon Trough forearc basin and sequentially closes interarc water gates between volcanic islands from north to south. The Loho and the Taitung interarc water gates in the advanced collision zone were closed at ~3.0 Ma and ~1.2 Ma, coinciding with the very low SCS deep-sea benthic δ13C events at 3.0 and 1.2-0.4 Ma, respectively. The Taitung Canyon between the Lutao and Lanyu volcanic islands in the incipient collision zone is semi-closed presently. These closure events also lead to the result that the WP deep water intrudes westward into the SCS principally through the Bashi Channel between the Lanyu and Batan volcanic islands in the subduction zone.

Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples.

PubMed

La Cono, Violetta; Smedile, Francesco; La Spada, Gina; Arcadi, Erika; Genovese, Maria; Ruggeri, Gioacchino; Genovese, Lucrezia; Giuliano, Laura; Yakimov, Michail M

2015-06-01

Dark ocean microbial communities are actively involved in chemoautotrophic and anaplerotic fixation of bicarbonate. Thus, aphotic pelagic realm of the ocean might represent a significant sink of CO2 and source of primary production. However, the estimated metabolic activities in the dark ocean are fraught with uncertainties. Typically, deep-sea samples are recovered to the sea surface for downstream processing on deck. Shifts in ambient settings, associated with such treatments, can likely change the metabolic activity and community structure of deep-sea adapted autochthonous microbial populations. To estimate influence of recovery and short-term handling of deep-sea samples, we monitored the succession of bathypelagic microbial community during its 3 days long on deck incubation. We demonstrated that at the end of exposition, the deep-sea archaeal population decreased threefold, whereas the bacterial fraction doubled in size. As revealed by phylogenetic analyses of amoA gene transcripts, dominance of the active ammonium-oxidizing bathypelagic Thaumarchaeota groups shifted over time very fast. These findings demonstrated the simultaneous existence of various 'deep-sea ecotypes', differentially reacting to the sampling and downstream handling. Our study supports the hypothesis that metabolically active members of meso- and bathypelagic Thaumarchaeota possess the habitat-specific distribution, metabolic complexity and genetic divergence at subpopulation level. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Deep-sea pennatulaceans (sea pens) - recent discoveries, morphological adaptations, and responses to benthic oceanographic parameters

NASA Astrophysics Data System (ADS)

Williams, G. C.

2015-12-01

Pennatulaceans are sessile, benthic marine organisms that are bathymetrically wide-ranging, from the intertidal to approximately 6300 m in depth, and are conspicuous constituents of deep-sea environments. The vast majority of species are adapted for anchoring in soft sediments by the cylindrical peduncle - a muscular hydrostatic skeleton. However, in the past decade a few species ("Rockpens") have been discovered and described that can attach to hard substratum such as exposed rocky outcrops at depths between 669 and 1969 m, by a plunger-like adaptation of the base of the peduncle. Of the thirty-six known genera, eleven (or 30%) have been recorded from depths greater than 1000 m. The pennatulacean depth record holders are an unidentified species of Umbellula from 6260 m in the Peru-Chile Trench and a recently-discovered and described genus and species, Porcupinella profunda, from 5300 m the Porcupine Abyssal Plain of the northeastern Atlantic. A morphologically-differentiated type of polyp (acrozooid) have recently been discovered and described in two genera of shallow-water coral reef sea pens. Acrozooids apparently represent asexual buds and presumably can detach from the adult to start clonal colonies through asexual budding. Acrozooids are to be expected in deep-sea pennatulaceans, but so far have not been observed below 24 m in depth. Morphological responses at depths greater than 1000 m in deep-sea pennatulaceas include: fewer polyps, larger polyps, elongated stalks, and clustering of polyps along the rachis. Responses to deep-ocean physical parameters and anthropogenic changes that could affect the abundance and distribution of deep-sea pennatulaceans include changes in bottom current flow and food availability, changes in seawater temperature and pH, habitat destruction by fish trawling, and sunken refuse pollution. No evidence of the effects of ocean acidification or other effects of anthropogenic climate change in sea pens of the deep-sea has been recorded as yet. However, the effects of plastic pollution and trawling damage in the deep-sea regarding pennatulacean populations are known in various regions globally.

Broad-scale predictability of carbohydrates and exopolymers in Antarctic and Arctic sea ice

PubMed Central

Underwood, Graham J. C.; Aslam, Shazia N.; Michel, Christine; Niemi, Andrea; Norman, Louiza; Meiners, Klaus M.; Laybourn-Parry, Johanna; Paterson, Harriet; Thomas, David N.

2013-01-01

Sea ice can contain high concentrations of dissolved organic carbon (DOC), much of which is carbohydrate-rich extracellular polymeric substances (EPS) produced by microalgae and bacteria inhabiting the ice. Here we report the concentrations of dissolved carbohydrates (dCHO) and dissolved EPS (dEPS) in relation to algal standing stock [estimated by chlorophyll (Chl) a concentrations] in sea ice from six locations in the Southern and Arctic Oceans. Concentrations varied substantially within and between sampling sites, reflecting local ice conditions and biological content. However, combining all data revealed robust statistical relationships between dCHO concentrations and the concentrations of different dEPS fractions, Chl a, and DOC. These relationships were true for whole ice cores, bottom ice (biomass rich) sections, and colder surface ice. The distribution of dEPS was strongly correlated to algal biomass, with the highest concentrations of both dEPS and non-EPS carbohydrates in the bottom horizons of the ice. Complex EPS was more prevalent in colder surface sea ice horizons. Predictive models (validated against independent data) were derived to enable the estimation of dCHO concentrations from data on ice thickness, salinity, and vertical position in core. When Chl a data were included a higher level of prediction was obtained. The consistent patterns reflected in these relationships provide a strong basis for including estimates of regional and seasonal carbohydrate and dEPS carbon budgets in coupled physical-biogeochemical models, across different types of sea ice from both polar regions. PMID:24019487

Broad-scale predictability of carbohydrates and exopolymers in Antarctic and Arctic sea ice.

PubMed

Underwood, Graham J C; Aslam, Shazia N; Michel, Christine; Niemi, Andrea; Norman, Louiza; Meiners, Klaus M; Laybourn-Parry, Johanna; Paterson, Harriet; Thomas, David N

2013-09-24

Sea ice can contain high concentrations of dissolved organic carbon (DOC), much of which is carbohydrate-rich extracellular polymeric substances (EPS) produced by microalgae and bacteria inhabiting the ice. Here we report the concentrations of dissolved carbohydrates (dCHO) and dissolved EPS (dEPS) in relation to algal standing stock [estimated by chlorophyll (Chl) a concentrations] in sea ice from six locations in the Southern and Arctic Oceans. Concentrations varied substantially within and between sampling sites, reflecting local ice conditions and biological content. However, combining all data revealed robust statistical relationships between dCHO concentrations and the concentrations of different dEPS fractions, Chl a, and DOC. These relationships were true for whole ice cores, bottom ice (biomass rich) sections, and colder surface ice. The distribution of dEPS was strongly correlated to algal biomass, with the highest concentrations of both dEPS and non-EPS carbohydrates in the bottom horizons of the ice. Complex EPS was more prevalent in colder surface sea ice horizons. Predictive models (validated against independent data) were derived to enable the estimation of dCHO concentrations from data on ice thickness, salinity, and vertical position in core. When Chl a data were included a higher level of prediction was obtained. The consistent patterns reflected in these relationships provide a strong basis for including estimates of regional and seasonal carbohydrate and dEPS carbon budgets in coupled physical-biogeochemical models, across different types of sea ice from both polar regions.

Radiocarbon (14C) Constraints On The Fraction Of Refractory Dissolved Organic Carbon In Primary Marine Aerosol From The Northwest Atlantic

NASA Astrophysics Data System (ADS)

Beaupre, S. R.; Kieber, D. J.; Keene, W. C.; Long, M. S.; Frossard, A. A.; Kinsey, J. D.; Duplessis, P.; Chang, R.; Maben, J. R.; Lu, X.; Zhu, Y.; Bisgrove, J.

2017-12-01

Nearly all organic carbon in seawater is dissolved (DOC), with more than 95% considered refractory based on modeled average lifetimes ( 16,000 years) and characteristically old bulk radiocarbon (14C) ages (4000 - 6000 years) that exceed the timescales of overturning circulation. Although this refractory dissolved organic carbon (RDOC) is present throughout the oceans as a major reservoir of the global carbon cycle, its sources and sinks are poorly constrained. Recently, RDOC was proposed to be removed from the oceans through adsorption onto the surfaces of rising bubble plumes produced by breaking waves, ejection into the atmosphere via bubble bursting as a component of primary marine aerosol (PMA), and subsequent oxidation in the atmosphere. To test this mechanism, we used natural abundance 14C (5730 ± 40 yr half-life) to trace the fraction of RDOC in PMA produced in a high capacity generator at two biologically-productive and two oligotrophic hydrographic stations in the Northwest Atlantic Ocean during a research cruise aboard the R/V Endeavor (Sep - Oct 2016). The 14C signatures of PMA separately generated day and night from near-surface (5 m) and deep (2500 m) seawater were compared with corresponding 14C signatures in seawater of near-surface dissolved inorganic carbon (DIC, a proxy for recently produced organic matter), bulk deep DOC (a proxy for RDOC), and near-surface bulk DOC. Results constrain the selectivity of PMA formation from RDOC in natural mixtures of recently produced and refractory DOC. The implications of these results for PMA formation and RDOC biogeochemistry will be discussed.

[Exchange Fluxes and Coupling Relationship of Dissolved Inorganic Carbon and Dissolved Organic Carbon Across the Water-Sediment Interface in Lakes].

PubMed

Wang, Wei-ying; Lü, Chang-wei; He, Jiang; Zuo, Le; Yan, Dao-hao

2015-10-01

In this work, the exchange fluxes and coupling relationship of dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) were investigated across the water-sediment interface in Lake Wuliangsuhai and Daihai by employing columnar simulation method. The results showed that the sediments in non-Phragmitescommunis area from Lake Wuliangsuhai functioned as the sources of DIC and DOC for overlying water, whereas the sediments from Lake Daihai as the sinks during the period of summer (90 days). In the experimental period, the average exchange rates of DIC and DOC were 71.07 mmol x (m2 x d)(-1) and 185.09 mmol x (m2 x d)(-1) in non-Phragmitescommunis area from Lake Wuliangsuhai, respectively; while in Lake Daihai, they were 155.75 mmol x (m2 x d)(-1) and -1478.08 mmol x (m2 x d)(-1) in shoal water zone, and -486.53 mmol x (m2 x d)(-1) and -1274.02 mmol x (m2 x d)(-1) in deep water zone, respectively. The coupling effects between DIC and DOC were governed by hydrobios, microbial uptake, abiotic and microbiological degradation in Lake Wuliangsuhai and in shoal water zone of Lake Daihai; while they were closely related to the coprecipitation process of CaCO3 and the fraction distribution of inorganic carbon in sediments in deep water zone of Lake Daihai. In summary, the sink or source functions of sediments could be considered as the results of synthetic action of lake types, offshore distance, geohydrochemistry and the fraction distribution of inorganic carbon.

An abyssal mobilome: viruses, plasmids and vesicles from deep-sea hydrothermal vents.

PubMed

Lossouarn, Julien; Dupont, Samuel; Gorlas, Aurore; Mercier, Coraline; Bienvenu, Nadege; Marguet, Evelyne; Forterre, Patrick; Geslin, Claire

2015-12-01

Mobile genetic elements (MGEs) such as viruses, plasmids, vesicles, gene transfer agents (GTAs), transposons and transpovirions, which collectively represent the mobilome, interact with cellular organisms from all three domains of life, including those thriving in the most extreme environments. While efforts have been made to better understand deep-sea vent microbial ecology, our knowledge of the mobilome associated with prokaryotes inhabiting deep-sea hydrothermal vents remains limited. Here we focus on the abyssal mobilome by reviewing accumulating data on viruses, plasmids and vesicles associated with thermophilic and hyperthermophilic Bacteria and Archaea present in deep-sea hydrothermal vents. Copyright © 2015 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Taxonomic revision of deep-sea Ostracoda from the Arctic Ocean

USGS Publications Warehouse

Yasuhara, Moriaki; Stepanova, Anna; Okahashi, Hisayo; Cronin, Thomas M.; Brouwers, Elisabeth M.

2015-01-01

Taxonomic revision of deep-sea Ostracoda from the Arctic Ocean was conducted to reduce taxonomic uncertainty that will improve our understanding of species ecology, biogeography and relationship to faunas from other deep-sea regions. Fifteen genera and 40 species were examined and (re-)illustrated with high-resolution scanning electron microscopy images, covering most of known deep-sea species in the central Arctic Ocean. Seven new species are described: Bythoceratina lomonosovensis n. sp., Cytheropteron parahamatum n. sp., Cytheropteron lanceae n. sp.,Cytheropteron irizukii n. sp., Pedicythere arctica n. sp., Cluthiawhatleyi n. sp., Krithe hunti n. sp. This study provides a robust taxonomic baseline for application to paleoceanographical reconstruction and biodiversity analyses in this climatically sensitive region.

Influence of fresh water, nutrients and DOC in two submarine-groundwater-fed estuaries on the west of Ireland.

PubMed

Smith, Aisling M; Cave, Rachel R

2012-11-01

Coastal fresh water sources, which discharge to the sea are expected to be directly influenced by climate change (e.g. increased frequency of extreme weather events). Sea-level rise and changes in rainfall patterns, changes in demand for drinking water and contamination caused by population and land use change, will also have an impact. Coastal waters with submarine groundwater discharge are of particular interest as this fresh water source is very poorly quantified. Two adjacent bays which host shellfish aquaculture sites along the coast of Co. Galway in the west of Ireland have been studied to establish the influence of fresh water inputs on nutrients and dissolved organic carbon (DOC) in each bay. Neither bay has riverine input and both are underlain by the karst limestone of the Burren and are susceptible to submarine groundwater discharge. Water and suspended matter samples were collected half hourly over 13 h tidal cycles over several seasons. Water samples were analysed for nutrients and DOC, while suspended matter was analysed for organic/inorganic content. Temperature and salinity measurements were recorded during each tidal station by SBE 37 MicroCAT conductivity/temperature sensors. Long-term mooring data were used to track freshwater input for Kinvara and Aughinish Bays and compare it with rainfall data. Results show that Kinvara Bay is much more heavily influenced by fresh water input than Aughinish Bay, and this is a strong source of fixed nitrogen to Kinvara Bay. Only during flood events is there a significant input of inorganic nitrogen from fresh water to Aughinish Bay, such as in late November 2009. Fresh water input does not appear to be a significant source of dissolved inorganic phosphate (DIP) to either bay, but is a source of DOC to both bays. C:N ratios of DOC/DON show a clear distinction between marine and terrestrially derived dissolved organic material. Copyright © 2012. Published by Elsevier B.V.

The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration

NASA Astrophysics Data System (ADS)

Barry, J. P.; Buck, K. R.; Lovera, C.; Brewer, P. G.; Seibel, B. A.; Drazen, J. C.; Tamburri, M. N.; Whaling, P. J.; Kuhnz, L.; Pane, E. F.

2013-08-01

The effects of low-pH, high-pCO2 conditions on deep-sea organisms were examined during four deep-sea CO2 release experiments simulating deep-ocean C sequestration by the direct injection of CO2 into the deep sea. We examined the survival of common deep-sea, benthic organisms (microbes; macrofauna, dominated by Polychaeta, Nematoda, Crustacea, Mollusca; megafauna, Echinodermata, Mollusca, Pisces) exposed to low-pH waters emanating as a dissolution plume from pools of liquid carbon dioxide released on the seabed during four abyssal CO2-release experiments. Microbial abundance in deep-sea sediments was unchanged in one experiment, but increased under environmental hypercapnia during another, where the microbial assemblage may have benefited indirectly from the negative impact of low-pH conditions on other taxa. Lower abyssal metazoans exhibited low survival rates near CO2 pools. No urchins or holothurians survived during 30-42 days of exposure to episodic, but severe environmental hypercapnia during one experiment (E1; pH reduced by as much as ca. 1.4 units). These large pH reductions also caused 75% mortality for the deep-sea amphipod, Haploops lodo, near CO2 pools. Survival under smaller pH reductions (ΔpH<0.4 units) in other experiments (E2, E3, E5) was higher for all taxa, including echinoderms. Gastropods, cephalopods, and fish were more tolerant than most other taxa. The gastropod Retimohnia sp. and octopus Benthoctopus sp. survived exposure to pH reductions that episodically reached -0.3 pH units. Ninety percent of abyssal zoarcids (Pachycara bulbiceps) survived exposure to pH changes reaching ca. -0.3 pH units during 30-42 day-long experiments.

Impact of Deepwater Horizon Spill on food supply to deep-sea benthos communities

USGS Publications Warehouse

Prouty, Nancy G.; Swarzenski, Pamela; Mienis, Furu; Duineveld, Gerald; Demopoulos, Amanda W.J.; Ross, Steve W.; Brooke, Sandra

2016-01-01

Deep-sea ecosystems encompass unique and often fragile communities that are sensitive to a variety of anthropogenic and natural impacts. After the 2010 Deepwater Horizon (DWH) oil spill, sampling efforts documented the acute impact of the spill on some deep-sea coral colonies. To investigate the impact of the DWH spill on quality and quantity of biomass delivered to the deep-sea, a suite of geochemical tracers (e.g., stable and radio-isotopes, lipid biomarkers, and compound specific isotopes) was measured from monthly sediment trap samples deployed near a high-density deep-coral site in the Viosca Knoll area of the north-central Gulf of Mexico prior to (Oct-2008 to Sept-2009) and after the spill (Oct-10 to Sept-11). Marine (e.g., autochthonous) sources of organic matter dominated the sediment traps in both years, however after the spill, there was a pronounced reduction in marinesourced OM, including a reduction in marine-sourced sterols and n-alkanes and a concomitant decrease in sediment trap organic carbon and pigment flux. Results from this study indicate a reduction in primary production and carbon export to the deep-sea in 2010-2011, at least 6-18 months after the spill started. Whereas satellite observations indicate an initial increase in phytoplankton biomass, results from this sediment trap study define a reduction in primary production and carbon export to the deep-sea community. In addition, a dilution from a low-14C carbon source (e.g., petrocarbon) was detected in the sediment trap samples after the spill, in conjunction with a change in the petrogenic composition. The data presented here fills a critical gap in our knowledge of biogeochemical processes and sub-acute impacts to the deep-sea that ensued after the 2010 DWH spill.

Radiocarbon Depression in Aquatic Foodwebs of the Colorado River, USA: Coupling Between Carbonate Weathering and the Biosphere

NASA Astrophysics Data System (ADS)

Sickman, J. O.; Huang, W.; Lucero, D.; Anderson, M.

2012-12-01

The 14C isotopic composition of living organisms is generally considered to be in isotopic equilibrium with atmosphere CO2. During the course of investigations of aquatic foodwebs of the Colorado River, we measured substantial radiocarbon depression of organisms within planktonic and benthic foodwebs of Copper Basin Reservoir, a short residence-time water body at the intake to the Colorado River Aqueduct. All trophic levels had depressed radiocarbon content with inferred "age" of ca. 1,200 radiocarbon years (range: 0.85 to 0.87 fraction modern carbon (fmc)). Additional measurements of the radiocarbon content of dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC) were made in other major rivers in California (New (near Salton Sea), Santa Ana (near Riverside), San Joaquin (near Fresno) and Salinas (near San Luis Obispo)). In the New River (which is composed primarily of irrigation tailwater derived from the Colorado River), the radiocarbon values for DIC closely matched those found in biota of the Copper Basin Reservoir (0.85 to 0.87 fmc), but radiocarbon values for DOC were slightly higher (0.91 to 0.95 fmc). In the other California rivers, radiocarbon concentrations in DIC were generally below modern and lower than corresponding levels in DOC; in the case of the Santa Ana River, DOC was older than DIC as a result of wastewater inputs from upstream treatment plants. Together these data suggest that the carbonate equilibrium of California rivers is influenced by weathering of carbonate minerals which produces HCO3- with no 14C. We hypothesize that this dead carbon can move into aquatic foodwebs via algae and phytoplankton uptake during photosynthesis, depressing the 14C content of aquatic foodwebs below that of the atmosphere. Based on a simple two-component mixing model incorporating carbonate weathering and atmospheric CO2, we estimate that 15-17% of the carbon in the aquatic foodweb of Copper Basin is derived directly from mineral weathering of carbonate minerals in the Colorado River basin. Worldwide, only a few cases of radiocarbon depression have been reported for aquatic ecosystems. The extent of 14C depression in the Colorado River is much larger than that observed in the Arctic or deep ocean environments.

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Lamellomorpha sp. indicated by metagenomics

NASA Astrophysics Data System (ADS)

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-01

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Lamellomorpha sp. at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Lamellomorpha sp.. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Lamellomorpha sp..

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics

PubMed Central

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-01

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi. PMID:24463735

Population differentiation decreases with depth in deep-sea gastropods

NASA Astrophysics Data System (ADS)

Etter, Ron J.; Rex, Michael A.

1990-08-01

The evolutionary processes that have generated the rich and highly endemic deep-sea benthic invertebrate fauna remain largely unstudied. Patterns of geographic variation constitute the most basic and essential information for understanding speciation and adaptive radiation. Here we present a multivariate analysis of phenotypic distance to quantify geographic variation in shell form among populations of eight deep-sea gastropod species distributed along a depth gradient in the western North Atlantic. Our primary aim is to identify regions within the deep sea that may promote population differentiation. The degree of interpopulation divergence is highest at the shelf-slope transition (200 m), and then decreases dramatically with increasing depth across the bathyal region (200-4000 m) to the abyssal plain (>4000 m). Phenotypic change parallels faunal change along the depth gradient, suggesting that the selective regime becomes more uniform with increasing depth. Results indicate that the potential for gastropod radiation within the deep-sea environment (>200 m) varies geographically and is highest in the narrow upper bathyal region.

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi [corrected]. indicated by metagenomics.

PubMed

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-27

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi [corrected] . at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi [corrected]. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi [corrected].

Deep Seawater Intrusion Enhanced by Geothermal Through Deep Faults in Xinzhou Geothermal Field in Guangdong, China

NASA Astrophysics Data System (ADS)

Lu, G.; Ou, H.; Hu, B. X.; Wang, X.

2017-12-01

This study investigates abnormal sea water intrusion from deep depth, riding an inland-ward deep groundwater flow, which is enhanced by deep faults and geothermal processes. The study site Xinzhou geothermal field is 20 km from the coast line. It is in southern China's Guangdong coast, a part of China's long coastal geothermal belt. The geothermal water is salty, having fueled an speculation that it was ancient sea water retained. However, the perpetual "pumping" of the self-flowing outflow of geothermal waters might alter the deep underground flow to favor large-scale or long distant sea water intrusion. We studied geochemical characteristics of the geothermal water and found it as a mixture of the sea water with rain water or pore water, with no indication of dilution involved. And we conducted numerical studies of the buoyancy-driven geothermal flow in the deep ground and find that deep down in thousand meters there is favorable hydraulic gradient favoring inland-ward groundwater flow, allowing seawater intrude inland for an unusually long tens of kilometers in a granitic groundwater flow system. This work formed the first in understanding geo-environment for deep ground water flow.

Draft Genome Sequence of Deep-Sea Alteromonas sp. Strain V450 Isolated from the Marine Sponge Leiodermatium sp.

PubMed Central

Barrett, Nolan H.; McCarthy, Peter J.

2017-01-01

ABSTRACT The proteobacterium Alteromonas sp. strain V450 was isolated from the Atlantic deep-sea sponge Leiodermatium sp. Here, we report the draft genome sequence of this strain, with a genome size of approx. 4.39 Mb and a G+C content of 44.01%. The results will aid deep-sea microbial ecology, evolution, and sponge-microbe association studies. PMID:28153886

Assessing Environmental Drivers of DOC Fluxes in the Shark River Estuary: Modeling the Effects of Climate, Hydrology and Water Management

NASA Astrophysics Data System (ADS)

Regier, P.; Briceno, H.; Jaffe, R.

2016-02-01

Urban and agricultural development of the South Florida peninsula has disrupted freshwater flow in the Everglades, a hydrologically connected ecosystem stretching from central Florida to the Gulf of Mexico. Current system-scale restoration efforts aim to restore natural hydrologic regimes to reestablish pre-drainage ecosystem functioning through increased water availability, quality and timing. However, it is uncertain how hydrologic restoration combined with climate change will affect the downstream section of the system, including the mangrove estuaries of Everglades National Park. Aquatic transport of carbon, primarily as dissolved organic carbon (DOC), plays a critical role in biogeochemical cycling and food-web dynamics, and will be affected both by water management policies and climate change. To better understand DOC dynamics in these estuaries and how hydrology, climate and water management may affect them, 14 years of monthly data collected in the Shark River estuary were used to build a DOC flux model. Multi-variate methods were applied to long-term data-sets for hydrology, water quality and climate to untangle the interconnected environmental drivers that control DOC export at intra and inter-annual scales. DOC fluxes were determined to be primarily controlled by hydrology but also by seasonality and long-term climate patterns. Next, a 4-component model (salinity, inflow, rainfall, Atlantic Multidecadal Oscillation) capable of predicting DOC fluxes (R2=0.78, p<0.0001, n=161) was established. Finally, potential climate change scenarios for the Everglades were applied to this model to assess DOC flux variations in response to climate and restoration variables. Although global predictions anticipate that DOC export will generally increase in the future, the majority of scenario runs indicated that DOC export from the Everglades is expected to decrease due to changes in rainfall, evapotranspiration, inflows and sea-level rise.

Effects of hydrostatic pressure on yeasts isolated from deep-sea hydrothermal vents.

PubMed

Burgaud, Gaëtan; Hué, Nguyen Thi Minh; Arzur, Danielle; Coton, Monika; Perrier-Cornet, Jean-Marie; Jebbar, Mohamed; Barbier, Georges

2015-11-01

Hydrostatic pressure plays a significant role in the distribution of life in the biosphere. Knowledge of deep-sea piezotolerant and (hyper)piezophilic bacteria and archaea diversity has been well documented, along with their specific adaptations to cope with high hydrostatic pressure (HHP). Recent investigations of deep-sea microbial community compositions have shown unexpected micro-eukaryotic communities, mainly dominated by fungi. Molecular methods such as next-generation sequencing have been used for SSU rRNA gene sequencing to reveal fungal taxa. Currently, a difficult but fascinating challenge for marine mycologists is to create deep-sea marine fungus culture collections and assess their ability to cope with pressure. Indeed, although there is no universal genetic marker for piezoresistance, physiological analyses provide concrete relevant data for estimating their adaptations and understanding the role of fungal communities in the abyss. The present study investigated morphological and physiological responses of fungi to HHP using a collection of deep-sea yeasts as a model. The aim was to determine whether deep-sea yeasts were able to tolerate different HHP and if they were metabolically active. Here we report an unexpected taxonomic-based dichotomic response to pressure with piezosensitve ascomycetes and piezotolerant basidiomycetes, and distinct morphological switches triggered by pressure for certain strains. Copyright © 2015 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Economic contribution of 'artificial upwelling' mariculture to sea-thermal power generation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roels, O.A.

1976-07-01

Deep-sea water has two valuable properties: it is uniformly cold and, compared to surface water, it is rich in nutrients such as nitrate and phosphate which are necessary for plant growth. In tropical and subtropical areas, the temperature difference between the warm surface water and the cold deep water can be used for sea-thermal power generation or other cooling applications such as air-conditioning, ice-making, desalination, and cooling of refineries, power plants, etc. Once the deep water is brought to the surface, utilization of both the cold temperature and the nutrient content is likely to be more advantageous than the usemore » of only one of them. Claude demonstrated the technical feasibility of sea-thermal power generation in Cuba in 1930. The technical feasibility of artificial upwelling mariculture in the St. Croix installation has been demonstrated. Results to date demonstrate that the gross sales value of the potential mariculture yield from a given volume of deep-sea water is many times that of the sales value of the power which can be generated by the Claude process from the same volume of deep water. Utilizing both the nutrient content and the cold temperature of the deep water may therefore make sea-thermal power generation economically feasible.« less

Effects of Hemagglutination Activity in the Serum of a Deep-Sea Vent Endemic Crab, Shinkaia Crosnieri, on Non-Symbiotic and Symbiotic Bacteria

PubMed Central

Fujiyoshi, So; Tateno, Hiroaki; Watsuji, Tomoo; Yamaguchi, Hideyuki; Fukushima, Daisuke; Mino, Sayaka; Sugimura, Makoto; Sawabe, Tomoo; Takai, Ken; Sawayama, Shigeki; Nakagawa, Satoshi

2015-01-01

In deep-sea hydrothermal environments, most invertebrates associate with dense populations of symbiotic microorganisms in order to obtain nutrition. The molecular interactions between deep-sea animals and environmental microbes, including their symbionts, have not yet been elucidated in detail. Hemagglutinins/lectins, which are carbohydrate-binding proteins, have recently been reported to play important roles in a wide array of biological processes, including the recognition and control of non-self materials. We herein assessed hemagglutination activity in the serum of a deep-sea vent endemic crab, Shinkaia crosnieri, which harbors chemosynthetic epibionts on its plumose setae. Horse and rabbit erythrocytes were agglutinated using this serum (opt. pH 7.5 and opt. temperature 15°C). Agglutinating activity was inhibited by eight kinds of sugars and several divalent cations, did not require any divalent metal ions, and remained detectable even after heating the serum at 100°C for 30 min. By using fluorescently labeled serum, we demonstrated that deep-sea crab serum components bound to the epibionts even in the presence of sugars. This study represents the first immunological assessment of a deep-sea vent endemic crab and demonstrated the possibility of a non-lectin-mediated symbiont-host interaction. PMID:26212518

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems.

PubMed

Takai, Ken; Oida, Hanako; Suzuki, Yohey; Hirayama, Hisako; Nakagawa, Satoshi; Nunoura, Takuro; Inagaki, Fumio; Nealson, Kenneth H; Horikoshi, Koki

2004-04-01

Distribution profiles of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems were mapped with culture-independent molecular techniques. Planktonic samples were obtained from the waters surrounding two geographically and geologically distinct hydrothermal systems, and the abundance of marine crenarchaeota group I was examined by 16S ribosomal DNA clone analysis, quantitative PCR, and whole-cell fluorescence in situ hybridization. A much higher proportion of marine crenarchaeota group I within the microbial community was detected in deep-sea hydrothermal environments than in normal deep and surface seawaters. The highest proportion was always obtained from the ambient seawater adjacent to hydrothermal emissions and chimneys but not from the hydrothermal plumes. These profiles were markedly different from the profiles of epsilon-Proteobacteria, which are abundant in the low temperatures of deep-sea hydrothermal environments.

The study of deep-sea cephalopods.

PubMed

Hoving, Henk-Jan T; Perez, Jose Angel A; Bolstad, Kathrin S R; Braid, Heather E; Evans, Aaron B; Fuchs, Dirk; Judkins, Heather; Kelly, Jesse T; Marian, José E A R; Nakajima, Ryuta; Piatkowski, Uwe; Reid, Amanda; Vecchione, Michael; Xavier, José C C

2014-01-01

"Deep-sea" cephalopods are here defined as cephalopods that spend a significant part of their life cycles outside the euphotic zone. In this chapter, the state of knowledge in several aspects of deep-sea cephalopod research are summarized, including information sources for these animals, diversity and general biogeography and life cycles, including reproduction. Recommendations are made for addressing some of the remaining knowledge deficiencies using a variety of traditional and more recently developed methods. The types of oceanic gear that are suitable for collecting cephalopod specimens and images are reviewed. Many groups of deep-sea cephalopods require taxonomic reviews, ideally based on both morphological and molecular characters. Museum collections play a vital role in these revisions, and novel (molecular) techniques may facilitate new use of old museum specimens. Fundamental life-cycle parameters remain unknown for many species; techniques developed for neritic species that could potentially be applied to deep-sea cephalopods are discussed. Reproductive tactics and strategies in deep-sea cephalopods are very diverse and call for comparative evolutionary and experimental studies, but even in the twenty-first century, mature individuals are still unknown for many species. New insights into diet and trophic position have begun to reveal a more diverse range of feeding strategies than the typically voracious predatory lifestyle known for many cephalopods. Regular standardized deep-sea cephalopod surveys are necessary to provide insight into temporal changes in oceanic cephalopod populations and to forecast, verify and monitor the impacts of global marine changes and human impacts on these populations. © 2014 Elsevier Ltd All rights reserved.

77 FR 53878 - L.S. Starrett Company; Notice of Application Tendered for Filing With the Commission and...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-04

... 385.2001(a)(1)(iii) and the instructions on the Commission's Web site http://www.ferc.gov/docs-filing... conduit equipped with a 7-foot-high, 7-foot-wide gate; (e) a 16-foot-wide, 4-foot-deep, 200-foot-long... generating unit; (d) and a 14- foot-wide, 9-foot-deep, 100-foot-long tailrace (e) six 900-foot-long, 600 volt...

Evolutionary process of deep-sea bathymodiolus mussels.

PubMed

Miyazaki, Jun-Ichi; de Oliveira Martins, Leonardo; Fujita, Yuko; Matsumoto, Hiroto; Fujiwara, Yoshihiro

2010-04-27

Since the discovery of deep-sea chemosynthesis-based communities, much work has been done to clarify their organismal and environmental aspects. However, major topics remain to be resolved, including when and how organisms invade and adapt to deep-sea environments; whether strategies for invasion and adaptation are shared by different taxa or unique to each taxon; how organisms extend their distribution and diversity; and how they become isolated to speciate in continuous waters. Deep-sea mussels are one of the dominant organisms in chemosynthesis-based communities, thus investigations of their origin and evolution contribute to resolving questions about life in those communities. We investigated worldwide phylogenetic relationships of deep-sea Bathymodiolus mussels and their mytilid relatives by analyzing nucleotide sequences of the mitochondrial cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit 4 (ND4) genes. Phylogenetic analysis of the concatenated sequence data showed that mussels of the subfamily Bathymodiolinae from vents and seeps were divided into four groups, and that mussels of the subfamily Modiolinae from sunken wood and whale carcasses assumed the outgroup position and shallow-water modioline mussels were positioned more distantly to the bathymodioline mussels. We provisionally hypothesized the evolutionary history of Bathymodilolus mussels by estimating evolutionary time under a relaxed molecular clock model. Diversification of bathymodioline mussels was initiated in the early Miocene, and subsequently diversification of the groups occurred in the early to middle Miocene. The phylogenetic relationships support the "Evolutionary stepping stone hypothesis," in which mytilid ancestors exploited sunken wood and whale carcasses in their progressive adaptation to deep-sea environments. This hypothesis is also supported by the evolutionary transition of symbiosis in that nutritional adaptation to the deep sea proceeded from extracellular to intracellular symbiotic states in whale carcasses. The estimated evolutionary time suggests that the mytilid ancestors were able to exploit whales during adaptation to the deep sea.

Where does boreal stream DOC come from? - Quantifying the contribution from different landscape compartments using stable C isotope ratios.

NASA Astrophysics Data System (ADS)

Brink Bylund, J.; Bastviken, D.; Morth, C.; Laudon, H.; Giesler, R.; Buffam, I.

2007-12-01

Stable carbon isotope (δ13C) ratios are frequently used as a source tracer of e.g. organic matter (OM) produced in terrestrial versus aquatic environments. To our knowledge there has been no previous attempt to quantify the relative contribution of dissolved organic carbon (DOC) from various landscape compartments in catchments of different sizes. Here, we test to what extent δ13C values can be used also to quantify the relative contribution of DOC from wetlands/riparian zones along streams, and off stream forest habitats, respectively. We present data on spatial and temporal variability of DOC concentrations and δ13C-DOC values, during the year of 2005 in Krycklan catchment, a boreal stream network in northern Sweden. Ten stream sites, ranging from order 1 to 4, were monitored in sub catchments with different wetland coverage. Spatial variation of DOC concentration showed a weak but statistically significant relationship with wetland area, with higher concentration with increasing percent of wetland in the drainage area. During base flow the difference in δ13C-DOC values was significantly different between forest (-27.5‰) and wetland (-28.1‰). This spatial pattern disappears during spring peak flow when higher discharge flushing upper soil layer and the riparian zone on DOC in the catchments. A simple mixing model using DOC and δ13C-DOC showed that stream water DOC could be describe as a mixture of DOC coming from forest (deep) groundwater and wetland/riparian zone water. The result indicates that during spring peak flow almost all stream DOC (84-100%) is derived from wetlands and riparian zones. The wetland/riparian water dominates the stream DOC flux at all hydrological events, except for two sites, one forest dominated and one mixed catchment, where the forest groundwater dominated the DOC transport during base flow. Although the total wetland area in Krycklan catchment only represent 8.3%, it contributed, together with riparian zones, to as much as 83% of the yearly DOC transport. This study shows that there is a great potential in using stable carbon isotopes to quantify the relative contribution of DOC from various landscape compartments in catchments. Quantitative patterns are crucial for several reasons. It is for example necessary in predicting the response to global warming which will result in a changed hydrology and shifts in the relative area of the landscape compartments in boreal environments. KEY WORDS carbon isotopes; dissolved organic carbon; streams; boreal; landscape compartments; wetland; groundwater

Mass extinctions in the deep sea

NASA Technical Reports Server (NTRS)

Thomas, E.

1988-01-01

The character of mass extinctions can be assessed by studying extinction patterns of organisms, the fabric of the extinction, and assessing the environmental niche and mode of life of survivors. Deep-sea benthic foraminifera have been listed as little affected by the Cretaceous-Tertiary (K-T) mass extinction, but very few quantitative data are available. New data on deep-sea Late Maestrichtian-Eocene benthic foraminifera from Maud Rise (Antractica) indicate that about 10 percent of the species living at depths of 2000 to 2500 m had last appearances within 1 my of the Cretaceous-Tertiary (K-T) boundary, versus about 25 percent of species at 1000 to 1500 m. Many survivors from the Cretaceous became extinct in a period of global deep-sea benthic foraminiferal extinction at the end of the Paleocene, a time otherwise marked by very few extinctions. Preliminary conclusions suggest that the deep oceanic environment is essentially decoupled from the shallow marine and terrestrial environment, and that even major disturbances of one of these will not greatly affect the other. This gives deep-sea benthic faunas a good opportunity to recolonize shallow environments from greater depths and vice versa after massive extinctions. The decoupling means that data on deep-sea benthic boundary was caused by the environmental effects of asteriod impact or excessive volcanism. The benthic foraminiferal data strongly suggest, however, that the environmental results were strongest at the Earth's surface, and that there was no major disturbance of the deep ocean; this pattern might result both from excessive volcanism and from an impact on land.

Decadal trends in deep ocean salinity and regional effects on steric sea level

NASA Astrophysics Data System (ADS)

Purkey, S. G.; Llovel, W.

2017-12-01

We present deep (below 2000 m) and abyssal (below 4000 m) global ocean salinity trends from the 1990s through the 2010s and assess the role of deep salinity in local and global sea level budgets. Deep salinity trends are assessed using all deep basins with available full-depth, high-quality hydrographic section data that have been occupied two or more times since the 1980s through either the World Ocean Circulation Experiment (WOCE) Hydrographic Program or the Global Ship-Based Hydrographic Investigations Program (GO-SHIP). All salinity data is calibrated to standard seawater and any intercruise offsets applied. While the global mean deep halosteric contribution to sea level rise is close to zero (-0.017 +/- 0.023 mm/yr below 4000 m), there is a large regional variability with the southern deep basins becoming fresher and northern deep basins becoming more saline. This meridional gradient in the deep salinity trend reflects different mechanisms driving the deep salinity variability. The deep Southern Ocean is freshening owing to a recent increased flux of freshwater to the deep ocean. Outside of the Southern Ocean, the deep salinity and temperature changes are tied to isopycnal heave associated with a falling of deep isopycnals in recent decades. Therefore, regions of the ocean with a deep salinity minimum are experiencing both a halosteric contraction with a thermosteric expansion. While the thermosteric expansion is larger in most cases, in some regions the halosteric compensates for as much as 50% of the deep thermal expansion, making a significant contribution to local sea level rise budgets.

Antifouling potentials of eight deep-sea-derived fungi from the South China Sea.

PubMed

Zhang, Xiao-Yong; Xu, Xin-Ya; Peng, Jiang; Ma, Chun-Feng; Nong, Xu-Hua; Bao, Jie; Zhang, Guang-Zhao; Qi, Shu-Hua

2014-04-01

Marine-derived microbial secondary metabolites are promising potential sources of nontoxic antifouling agents. The search for environmentally friendly and low-toxic antifouling components guided us to investigate the antifouling potentials of eight novel fungal isolates from deep-sea sediments of the South China Sea. Sixteen crude ethyl acetate extracts of the eight fungal isolates showed distinct antibacterial activity against three marine bacteria (Loktanella hongkongensis UST950701-009, Micrococcus luteus UST950701-006 and Pseudoalteromonas piscida UST010620-005), or significant antilarval activity against larval settlement of bryozoan Bugula neritina. Furthermore, the extract of Aspergillus westerdijkiae DFFSCS013 displayed strong antifouling activity in a field trial lasting 4 months. By further bioassay-guided isolation, five antifouling alkaloids including brevianamide F, circumdatin F and L, notoamide C, and 5-chlorosclerotiamide were isolated from the extract of A. westerdijkiae DFFSCS013. This is the first report about the antifouling potentials of metabolites of the deep-sea-derived fungi from the South China Sea, and the first stage towards the development of non- or low-toxic antifouling agents from deep-sea-derived fungi.

Draft Genome Sequence of Deep-Sea Alteromonas sp. Strain V450 Isolated from the Marine Sponge Leiodermatium sp.

PubMed

Wang, Guojun; Barrett, Nolan H; McCarthy, Peter J

2017-02-02

The proteobacterium Alteromonas sp. strain V450 was isolated from the Atlantic deep-sea sponge Leiodermatium sp. Here, we report the draft genome sequence of this strain, with a genome size of approx. 4.39 Mb and a G+C content of 44.01%. The results will aid deep-sea microbial ecology, evolution, and sponge-microbe association studies. Copyright © 2017 Wang et al.

Eustatic control of turbidites and winnowed turbidites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shanmugam, G.; Moiola, R.J.

1982-05-01

Global changes in sea level, primarily the results of tectonism and glaciation, control deep-sea sedimentation. During periods of low sea level the frequency of turbidity currents is greatly increased. Episodes of low sea level also cause vigorous contour currents, which winnow away the fines of turbidites. In the rock record, the occurrence of most turbidites and winnowed turbidities closely corresponds to global lowstands of paleo-sea level. This observation may be useful in predicting the occurrence of deep-sea reservoir facies in the geologic record.

Towards ecosystem based management and monitoring of the deep Mediterranean, North-East Atlantic and Beyond

NASA Astrophysics Data System (ADS)

Grehan, Anthony J.; Arnaud-Haond, Sophie; D'Onghia, Gianfranco; Savini, Alessandra; Yesson, Chris

2017-11-01

The deep sea covers 65% of the earth's surface and 95% of the biosphere but only a very small fraction (less than 0.0001%) of this has been explored (Rogers et al., 2015; Taylor and Roterman, 2017). However, current knowledge indicates that the deep ocean is characterized by a high level of biodiversity and by the presence of important biological and non-renewable resources. As well as vast flat and muddy plains, the topography of the deep ocean contains a variety of complex and heterogeneous seafloor features, such as canyons, seamounts, cold seeps, hydrothermal vents and biogenic (deep-water coral) reefs and sponge bioherms that harbour an unquantified and diverse array of organisms. The deep sea, despite its remoteness, provides a variety of supporting, provisioning, regulating and cultural, ecosystem goods and services (Thurber et al., 2014). The recent push for 'Blue Growth', to unlock the potential of seas and oceans (European Commission, 2017) has increased the focus on the potential to exploit resources in the deep-sea and consequently the need for improved management (Thurber et al., 2014).

Source- and degradation-diagnostic of colloidal organic matter exported by rivers across the Eurasian Arctic margin

NASA Astrophysics Data System (ADS)

Karlsson, Emma; Gelting, Johan; Tesi, Tommaso; van Dongen, Bart; Kruså, Martin; Vonk, Jorien; Sanchez-Garcia, Laura; Semiletov, Igor; Charkin, Alexander; Dudarev, Oleg; Gustafsson, Örjan

2013-04-01

Both models and in-situ observations indicate that the Arctic watersheds will experience a significant increase in temperature, resulting in higher runoff and remobilization of the vast carbon reservoirs currently held stable under frozen conditions. However, the sources and degradability of the dissolved organic carbon (DOC) released to this aquatic land-ocean conduit in high latitude regions is still poorly constrained. For example, there is a particular lack in our understanding of the fate of the DOC once it enters the Arctic Ocean. This study therefore investigated the compositional changes of the organic colloidal material along the Arctic land-ocean continuum. Large-volume samples of high-molecular weight DOC (colloids) were isolated as part of the International Siberian Shelf Study 2008 (ISSS-08) using 1000 D cross-flow ultrafiltration outside the mouths of Arctic rivers Ob, Yenisey, Lena, Indigirka and Kolyma as well as on the adjacent continental shelf seas Laptev Sea and the East Siberian Sea. The colloidal fraction was characterized by both bulk isotope parameters (δ13C and Δ14C) and with macromolecular biomarkers such as free lipids (n-alkanes, n-alkanoic acids, n-alkanols) and CuO reaction products (lignin phenols, cutin derived-products, protein and lipid products). In this presentation we will focus on regional differences between contrasting watersheds characterized by different climate and vegetation as well as permafrost conditions. Particular emphasis will be placed on origin, degradation, and dilution of the terrigenous colloidal material during its transport from land to the ocean. Finally, the comparison between the dissolved and particulate fractions will also be presented to highlight differences and similarities between these two pools of aquatic carbon.

Scientific Encounters of the Mysterious Sea. Reading Activities That Explore the Mysterious Creatures of the Deep Blue Sea. Grades 4-7.

ERIC Educational Resources Information Center

Embry, Lynn

This activity book presents reading activities for grades 4-7 exploring the mysterious creatures of the deep sea. The creatures include: angel sharks; argonauts; barberfish; comb jelly; croakers; electric rays; flying fish; giganturid; lantern fish; narwhals; northern basket starfish; ocean sunfish; Portuguese man-of-war; sea cucumbers; sea…

Global pulses of organic carbon burial in deep-sea sediments during glacial maxima

PubMed Central

Cartapanis, Olivier; Bianchi, Daniele; Jaccard, Samuel L.; Galbraith, Eric D.

2016-01-01

The burial of organic carbon in marine sediments removes carbon dioxide from the ocean–atmosphere pool, provides energy to the deep biosphere, and on geological timescales drives the oxygenation of the atmosphere. Here we quantify natural variations in the burial of organic carbon in deep-sea sediments over the last glacial cycle. Using a new data compilation of hundreds of sediment cores, we show that the accumulation rate of organic carbon in the deep sea was consistently higher (50%) during glacial maxima than during interglacials. The spatial pattern and temporal progression of the changes suggest that enhanced nutrient supply to parts of the surface ocean contributed to the glacial burial pulses, with likely additional contributions from more efficient transfer of organic matter to the deep sea and better preservation of organic matter due to reduced oxygen exposure. These results demonstrate a pronounced climate sensitivity for this global carbon cycle sink. PMID:26923945

Radiocarbon-based ages and growth rates of bamboo corals from the Gulf of Alaska

NASA Astrophysics Data System (ADS)

Roark, E. Brendan; Guilderson, Thomas P.; Flood-Page, Sarah; Dunbar, Robert B.; Ingram, B. Lynn; Fallon, Stewart J.; McCulloch, Malcolm

2005-02-01

Deep-sea coral communities have long been recognized by fisherman as areas that support large populations of commercial fish. As a consequence, many deep-sea coral communities are threatened by bottom trawling. Successful management and conservation of this widespread deep-sea habitat requires knowledge of the age and growth rates of deep-sea corals. These organisms also contain important archives of intermediate and deep-water variability, and are thus of interest in the context of decadal to century-scale climate dynamics. Here, we present Δ14C data that suggest that bamboo corals from the Gulf of Alaska are long-lived (75-126 years) and that they acquire skeletal carbon from two distinct sources. Independent verification of our growth rate estimates and coral ages is obtained by counting seasonal Sr/Ca cycles and probable lunar cycle growth bands.

Irminger Sea deep convection injects oxygen and anthropogenic carbon to the ocean interior

PubMed Central

Fröb, F.; Olsen, A.; Våge, K.; Moore, G. W. K.; Yashayaev, I.; Jeansson, E.; Rajasakaren, B.

2016-01-01

Deep convection in the subpolar North Atlantic ventilates the ocean for atmospheric gases through the formation of deep water masses. Variability in the intensity of deep convection is believed to have caused large variations in North Atlantic anthropogenic carbon storage over the past decades, but observations of the properties during active convection are missing. Here we document the origin, extent and chemical properties of the deepest winter mixed layers directly observed in the Irminger Sea. As a result of the deep convection in winter 2014–2015, driven by large oceanic heat loss, mid-depth oxygen concentrations were replenished and anthropogenic carbon storage rates almost tripled compared with Irminger Sea hydrographic section data in 1997 and 2003. Our observations provide unequivocal evidence that ocean ventilation and anthropogenic carbon uptake take place in the Irminger Sea and that their efficiency can be directly linked to atmospheric forcing. PMID:27786263

Radiocarbon-Based Ages and Growth Rates of Bamboo Corals from the Gulf of Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roark, E B; Guilderson, T P; Flood-Page, S

2004-12-12

Deep-sea coral communities have long been recognized by fisherman as areas that support large populations of commercial fish. As a consequence, many deep-sea coral communities are threatened by bottom trawling. Successful management and conservation of this widespread deep-sea habitat requires knowledge of the age and growth rates of deep-sea corals. These organisms also contain important archives of intermediate and deep-water variability, and are thus of interest in the context of decadal to century-scale climate dynamics. Here, we present {Delta}{sup 14}C data that suggest that bamboo corals from the Gulf of Alaska are long-lived (75-126 years) and that they acquire skeletalmore » carbon from two distinct sources. Independent verification of our growth rate estimates and coral ages is obtained by counting seasonal Sr/Ca cycles and probable lunar cycle growth bands.« less

Deep-sea geohazards in the South China Sea

NASA Astrophysics Data System (ADS)

Wu, Shiguo; Wang, Dawei; Völker, David

2018-02-01

Various geological processes and features that might inflict hazards identified in the South China Sea by using new technologies and methods. These features include submarine landslides, pockmark fields, shallow free gas, gas hydrates, mud diapirs and earthquake tsunami, which are widely distributed in the continental slope and reefal islands of the South China Sea. Although the study and assessment of geohazards in the South China Sea came into operation only recently, advances in various aspects are evolving at full speed to comply with National Marine Strategy and `the Belt and Road' Policy. The characteristics of geohazards in deep-water seafloor of the South China Sea are summarized based on new scientific advances. This progress is aimed to aid ongoing deep-water drilling activities and decrease geological risks in ocean development.

Fungi in deep-sea sediments of the Central Indian Basin

NASA Astrophysics Data System (ADS)

Damare, Samir; Raghukumar, Chandralata; Raghukumar, S.

2006-01-01

Although a great amount of information is available on bacteria inhabiting deep-sea sediments, the occurrence of fungi in this environment has been poorly studied and documented. We report here the occurrence of fungi in deep-sea sediments from ˜5000 m depth in the Central Indian Basin (9-16°S and 73-76°E). A total of 181 cultures of fungi, most of which belong to terrestrial sporulating species, were isolated by a variety of isolation techniques. Species of Aspergillus and non-sporulating fungi were the most common. Several yeasts were also isolated. Maximum species diversity was observed in 0-2 cm sections of the sediment cores. Direct staining of the sediments with Calcofluor, a fluorescent optical brightener, revealed the presence of fungal hyphae in the sediments. Immunofluorescence using polyclonal antibodies raised against a deep-sea isolate of Aspergillus terreus (# A 4634) confirmed its presence in the form of hyphae in the sub-section from which it was isolated. A total of 25 representative species of fungi produced substantial biomass at 200 bar pressure at 30° as well as at 5 °C. Many fungi showed abnormal morphology at 200 bar/5 °C. A comparison of terrestrial isolates with several deep-sea isolates indicated that the former could grow at 200 bar pressure when growth was initiated with mycelial inocula. However, spores of a deep-sea isolate A. terreus (# A 4634), but not the terrestrial ones, showed germination at 200 bar pressure and 30 °C. Our results suggest that terrestrial species of fungi transported to the deep sea are initially stressed but may gradually adapt themselves for growth under these conditions.

Insights into deep-sea adaptations and host-symbiont interactions: A comparative transcriptome study on Bathymodiolus mussels and their coastal relatives.

PubMed

Zheng, Ping; Wang, Minxiao; Li, Chaolun; Sun, Xiaoqing; Wang, Xiaocheng; Sun, Yan; Sun, Song

2017-10-01

Mussels (Bivalve: Mytilidae) have adapted to various habitats, from fresh water to the deep sea. To understand their adaptive characteristics in different habitats, particularly in the bathymodiolin mussels in deep-sea chemosynthetic ecosystems, we conducted a comparative transcriptomic analysis between deep-sea bathymodiolin mussels and their shallow-water relatives. A number of gene families related to stress responses were shared across all mussels, without specific or significantly expanded families in deep-sea species, indicating that all mussels are capable of adapting to diverse harsh environments, but that different members of the same gene family may be preferentially utilized by different species. One of the most extraordinary trait of bathymodiolin mussels is their endosymbiosis. Lineage-specific and positively selected TLRs and highly expressed C1QDC proteins were identified in the gills of the bathymodiolins, suggesting their possible functions in symbiont recognition. However, pattern recognition receptors of the bathymodiolins were globally reduced, facilitating the invasion and maintenance of the symbionts obtained by either endocytosis or phagocytosis. Additionally, various transporters were positively selected or more highly expressed in the deep-sea mussels, indicating a means by which necessary materials could be provided for the symbionts. Key genes supporting lysosomal activity were also positively selected or more highly expressed in the deep-sea mussels, suggesting that nutrition fixed by the symbionts can be absorbed in a "farming" way wherein the symbionts are digested by lysosomes. Regulation of key physiological processes including lysosome activity, apoptosis and immune reactions is needed to maintain a stable host-symbiont relationship, but the mechanisms are still unclear. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara

PubMed Central

Quaiser, Achim; Zivanovic, Yvan; Moreira, David; López-García, Purificación

2011-01-01

To extend comparative metagenomic analyses of the deep-sea, we produced metagenomic data by direct 454 pyrosequencing from bathypelagic plankton (1000 m depth) and bottom sediment of the Sea of Marmara, the gateway between the Eastern Mediterranean and the Black Seas. Data from small subunit ribosomal RNA (SSU rRNA) gene libraries and direct pyrosequencing of the same samples indicated that Gamma- and Alpha-proteobacteria, followed by Bacteroidetes, dominated the bacterial fraction in Marmara deep-sea plankton, whereas Planctomycetes, Delta- and Gamma-proteobacteria were the most abundant groups in high bacterial-diversity sediment. Group I Crenarchaeota/Thaumarchaeota dominated the archaeal plankton fraction, although group II and III Euryarchaeota were also present. Eukaryotes were highly diverse in SSU rRNA gene libraries, with group I (Duboscquellida) and II (Syndiniales) alveolates and Radiozoa dominating plankton, and Opisthokonta and Alveolates, sediment. However, eukaryotic sequences were scarce in pyrosequence data. Archaeal amo genes were abundant in plankton, suggesting that Marmara planktonic Thaumarchaeota are ammonia oxidizers. Genes involved in sulfate reduction, carbon monoxide oxidation, anammox and sulfatases were over-represented in sediment. Genome recruitment analyses showed that Alteromonas macleodii ‘surface ecotype', Pelagibacter ubique and Nitrosopumilus maritimus were highly represented in 1000 m-deep plankton. A comparative analysis of Marmara metagenomes with ALOHA deep-sea and surface plankton, whale carcasses, Peru subsurface sediment and soil metagenomes clustered deep-sea Marmara plankton with deep-ALOHA plankton and whale carcasses, likely because of the suboxic conditions in the deep Marmara water column. The Marmara sediment clustered with the soil metagenome, highlighting the common ecological role of both types of microbial communities in the degradation of organic matter and the completion of biogeochemical cycles. PMID:20668488

Predicted deep-sea coral habitat suitability for the U.S. West coast.

PubMed

Guinotte, John M; Davies, Andrew J

2014-01-01

Regional scale habitat suitability models provide finer scale resolution and more focused predictions of where organisms may occur. Previous modelling approaches have focused primarily on local and/or global scales, while regional scale models have been relatively few. In this study, regional scale predictive habitat models are presented for deep-sea corals for the U.S. West Coast (California, Oregon and Washington). Model results are intended to aid in future research or mapping efforts and to assess potential coral habitat suitability both within and outside existing bottom trawl closures (i.e. Essential Fish Habitat (EFH)) and identify suitable habitat within U.S. National Marine Sanctuaries (NMS). Deep-sea coral habitat suitability was modelled at 500 m×500 m spatial resolution using a range of physical, chemical and environmental variables known or thought to influence the distribution of deep-sea corals. Using a spatial partitioning cross-validation approach, maximum entropy models identified slope, temperature, salinity and depth as important predictors for most deep-sea coral taxa. Large areas of highly suitable deep-sea coral habitat were predicted both within and outside of existing bottom trawl closures and NMS boundaries. Predicted habitat suitability over regional scales are not currently able to identify coral areas with pin point accuracy and probably overpredict actual coral distribution due to model limitations and unincorporated variables (i.e. data on distribution of hard substrate) that are known to limit their distribution. Predicted habitat results should be used in conjunction with multibeam bathymetry, geological mapping and other tools to guide future research efforts to areas with the highest probability of harboring deep-sea corals. Field validation of predicted habitat is needed to quantify model accuracy, particularly in areas that have not been sampled.

Predicted Deep-Sea Coral Habitat Suitability for the U.S. West Coast

PubMed Central

Guinotte, John M.; Davies, Andrew J.

2014-01-01

Regional scale habitat suitability models provide finer scale resolution and more focused predictions of where organisms may occur. Previous modelling approaches have focused primarily on local and/or global scales, while regional scale models have been relatively few. In this study, regional scale predictive habitat models are presented for deep-sea corals for the U.S. West Coast (California, Oregon and Washington). Model results are intended to aid in future research or mapping efforts and to assess potential coral habitat suitability both within and outside existing bottom trawl closures (i.e. Essential Fish Habitat (EFH)) and identify suitable habitat within U.S. National Marine Sanctuaries (NMS). Deep-sea coral habitat suitability was modelled at 500 m×500 m spatial resolution using a range of physical, chemical and environmental variables known or thought to influence the distribution of deep-sea corals. Using a spatial partitioning cross-validation approach, maximum entropy models identified slope, temperature, salinity and depth as important predictors for most deep-sea coral taxa. Large areas of highly suitable deep-sea coral habitat were predicted both within and outside of existing bottom trawl closures and NMS boundaries. Predicted habitat suitability over regional scales are not currently able to identify coral areas with pin point accuracy and probably overpredict actual coral distribution due to model limitations and unincorporated variables (i.e. data on distribution of hard substrate) that are known to limit their distribution. Predicted habitat results should be used in conjunction with multibeam bathymetry, geological mapping and other tools to guide future research efforts to areas with the highest probability of harboring deep-sea corals. Field validation of predicted habitat is needed to quantify model accuracy, particularly in areas that have not been sampled. PMID:24759613

Invertebrate population genetics across Earth's largest habitat: The deep-sea floor.

PubMed

Taylor, M L; Roterman, C N

2017-10-01

Despite the deep sea being the largest habitat on Earth, there are just 77 population genetic studies of invertebrates (115 species) inhabiting non-chemosynthetic ecosystems on the deep-sea floor (below 200 m depth). We review and synthesize the results of these papers. Studies reveal levels of genetic diversity comparable to shallow-water species. Generally, populations at similar depths were well connected over 100s-1,000s km, but studies that sampled across depth ranges reveal population structure at much smaller scales (100s-1,000s m) consistent with isolation by adaptation across environmental gradients, or the existence of physical barriers to connectivity with depth. Few studies were ocean-wide (under 4%), and 48% were Atlantic-focused. There is strong emphasis on megafauna and commercial species with research into meiofauna, "ecosystem engineers" and other ecologically important species lacking. Only nine papers account for ~50% of the planet's surface (depths below 3,500 m). Just two species were studied below 5,000 m, a quarter of Earth's seafloor. Most studies used single-locus mitochondrial genes revealing a common pattern of non-neutrality, consistent with demographic instability or selective sweeps; similar to deep-sea hydrothermal vent fauna. The absence of a clear difference between vent and non-vent could signify that demographic instability is common in the deep sea, or that selective sweeps render single-locus mitochondrial studies demographically uninformative. The number of population genetics studies to date is miniscule in relation to the size of the deep sea. The paucity of studies constrains meta-analyses where broad inferences about deep-sea ecology could be made. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Local and regional scale exchanges of dissolved organic carbon (DOC) between tidal wetlands and their adjacent coastal waters

NASA Astrophysics Data System (ADS)

Osburn, C. L.; Joshi, I.; Lebrasse, M. C.; Oviedo-Vargas, D.; Bianchi, T. S.; Bohnenstiehl, D. R.; D'Sa, E. J.; He, R.; Ko, D.; Arellano, A.; Ward, N. D.

2017-12-01

The contribution of blue carbon from tidal wetlands to the coastal ocean in the form of dissolved organic carbon (DOC) represents a terrestrial-aquatic linkage of increasing importance. DOC flux results will be presented from local (tidal creek) and regional (bays) scale studies in which various combinations of field observations, ocean-color satellite observations, and the outputs of high-resolution hydrodynamic models were used to estimate DOC export. The first project was located in Bald Head Creek, a tributary to the Cape Fear River estuary in eastern North Carolina (NC). DOC fluxes were computed using a bathymetric data collected via unmanned surface vehicle (USV) and a numerical hydrodynamic model (SCHISM) based on the relationships between colored dissolved organic matter (CDOM) absorption, DOC concentration, and salinity taken from field observations. Model predictions estimated an annual net export of DOC at 54 g C m-2 yr-1 from the tidal creek to the adjacent estuary. Carbon stable isotope (δ13C) values were used to estimate the contribution of wetland carbon to this export. In the second project, DOC fluxes from the Apalachicola Bay, FL, Barataria Bay, LA, were based on the development of algorithms between DOC and CDOM absorption derived from the VIIRS ocean color sensor. The Navy Coastal Ocean Model (NCOM) was used to compute salt flux estimates from each bay to the Louisiana-Texas shelf. The relationship between salinity and CDOM was used to estimate net annual DOC exports of 8.35 x 106 g C m-2 y-1 (Apalachicola Bay) and 7.14 x 106 g C m-2 yr-1 (Barataria Bay). These values approximate 13% and 9% of the annual loads of DOC from the Mississippi River to the Gulf of Mexico, respectively. CDOM and lignin were used in a mixing model to estimate wetland-derived DOC were 2% for Apalachicola Bay and 13% for Barataria Bay, the latter having one of the highest rates of relative sea level rise in North America. Results from our project demonstrated the utility of CDOM, amenable to high resolution observations from multiple platforms, as a basis for constraining the heterogeneity of DOC exports from tidal wetlands to estuaries and coastal waters using numerical models at local and regional scales.

Fungal communities from the calcareous deep-sea sediments in the Southwest India Ridge revealed by Illumina sequencing technology.

PubMed

Zhang, Likui; Kang, Manyu; Huang, Yangchao; Yang, Lixiang

2016-05-01

The diversity and ecological significance of bacteria and archaea in deep-sea environments have been thoroughly investigated, but eukaryotic microorganisms in these areas, such as fungi, are poorly understood. To elucidate fungal diversity in calcareous deep-sea sediments in the Southwest India Ridge (SWIR), the internal transcribed spacer (ITS) regions of rRNA genes from two sediment metagenomic DNA samples were amplified and sequenced using the Illumina sequencing platform. The results revealed that 58-63 % and 36-42 % of the ITS sequences (97 % similarity) belonged to Basidiomycota and Ascomycota, respectively. These findings suggest that Basidiomycota and Ascomycota are the predominant fungal phyla in the two samples. We also found that Agaricomycetes, Leotiomycetes, and Pezizomycetes were the major fungal classes in the two samples. At the species level, Thelephoraceae sp. and Phialocephala fortinii were major fungal species in the two samples. Despite the low relative abundance, unidentified fungal sequences were also observed in the two samples. Furthermore, we found that there were slight differences in fungal diversity between the two sediment samples, although both were collected from the SWIR. Thus, our results demonstrate that calcareous deep-sea sediments in the SWIR harbor diverse fungi, which augment the fungal groups in deep-sea sediments. This is the first report of fungal communities in calcareous deep-sea sediments in the SWIR revealed by Illumina sequencing.

The deep-sea as a final global sink of semivolatile persistent organic pollutants? Part I: PCBs in surface and deep-sea dwelling fish of the north and south Atlantic and the Monterey Bay Canyon (California).

PubMed

Froescheis, O; Looser, R; Cailliet, G M; Jarman, W M; Ballschmiter, K

2000-03-01

The understanding of the global environmental multiphase distribution of persistent organic pollutants (POPs) as a result of the physico-chemical properties of the respective compounds is well established. We have analysed the results of a vertical transport of POPs from upper water layers (0-200 m) to the deepwater region (> 800 m) in terms of the contamination of the biophase in both water layers. The contents of persistent organochlorine compounds like polychlorinated biphenyls (PCBs) in fish living in the upper water layers of the North Atlantic and the South Atlantic, and at the continental shelf of California (Marine Sanctuary Monterey Bay and its deep-sea Canyon) are compared to the levels in deep-sea or bottom dwelling fish within the same geographic area. The deep-sea biota show significantly higher burdens as compared to surface-living species of the same region. There are also indications for recycling processes of POPs--in this case the PCBs--in the biophase of the abyss as well. It can be concluded that the bio- and geo phase of the deep-sea may act similarly as the upper horizons of forest and grasslands on the continents as an ultimate global sink for POPs in the marine environment.

Microsporidia-nematode associations in methane seeps reveal basal fungal parasitism in the deep sea

PubMed Central

Sapir, Amir; Dillman, Adler R.; Connon, Stephanie A.; Grupe, Benjamin M.; Ingels, Jeroen; Mundo-Ocampo, Manuel; Levin, Lisa A.; Baldwin, James G.; Orphan, Victoria J.; Sternberg, Paul W.

2013-01-01

The deep sea is Earth's largest habitat but little is known about the nature of deep-sea parasitism. In contrast to a few characterized cases of bacterial and protistan parasites, the existence and biological significance of deep-sea parasitic fungi is yet to be understood. Here we report the discovery of a fungus-related parasitic microsporidium, Nematocenator marisprofundi n. gen. n. sp. that infects benthic nematodes at methane seeps on the Pacific Ocean floor. This infection is species-specific and has been temporally and spatially stable over 2 years of sampling, indicating an ecologically consistent host-parasite interaction. A high distribution of spores in the reproductive tracts of infected males and females and their absence from host nematodes' intestines suggests a sexual transmission strategy in contrast to the fecal-oral transmission of most microsporidia. N. marisprofundi targets the host's body wall muscles causing cell lysis, and in severe infection even muscle filament degradation. Phylogenetic analyses placed N. marisprofundi in a novel and basal clade not closely related to any described microsporidia clade, suggesting either that microsporidia-nematode parasitism occurred early in microsporidia evolution or that host specialization occurred late in an ancient deep-sea microsporidian lineage. Our findings reveal that methane seeps support complex ecosystems involving interkingdom interactions between bacteria, nematodes, and parasitic fungi and that microsporidia parasitism exists also in the deep-sea biosphere. PMID:24575084

Sulfate Reduction and Sulfide Biomineralization By Deep-Sea Hydrothermal Vent Microorganisms

NASA Astrophysics Data System (ADS)

Picard, A.; Gartman, A.; Clarke, D. R.; Girguis, P. R.

2014-12-01

Deep-sea hydrothermal vents are characterized by steep temperature and chemical gradients and moderate pressures. At these sites, mesophilic sulfate-reducing bacteria thrive, however their significance for the formation of sulfide minerals is unknown. In this study we investigated sulfate reduction and sulfide biomineralization by the deep-sea bacterium Desulfovibrio hydrothermalis isolated from a deep-sea vent chimney at the Grandbonum vent site (13°N, East Pacific Rise, 2600 m water depth) [1]. Sulfate reduction rates were determined as a function of pressure and temperature. Biomineralization of sulfide minerals in the presence of various metal concentrations was characterized using light and electron microscopy and optical spectroscopy. We seek to better understand the significance of biological sulfate reduction in deep-sea hydrothermal environments, to characterize the steps in sulfide mineral nucleation and growth, and identify the interactions between cells and minerals. [1] D. Alazard, S. Dukan, A. Urios, F. Verhe, N. Bouabida, F. Morel, P. Thomas, J.L. Garcia and B. Ollivier, Desulfovibrio hydrothermalis sp. nov., a novel sulfate-reducing bacterium isolated from hydrothermal vents, Int. J. Syst. Evol. Microbiol., 53 (2003) 173-178.

Parametrization and evaluation of marine environmental impacts produced by deep-sea manganese nodule mining

NASA Astrophysics Data System (ADS)

Oebius, Horst U.; Becker, Hermann J.; Rolinski, Susanne; Jankowski, Jacek A.

The evaluation of marine environmental impacts resulting from the exploitation of marine resources requires the numerical description, parametrization, and modelling of such processes in order to be able to transfer, compare, and forecast the effects of anthropogenic activities in the deep sea. One of the controversial effects is the formation and behaviour of sediment clouds as a consequence of anthropogenic activities on the seafloor. Since there is a need for reliable data, two subprojects of the "Interdisciplinary Deep-sea Environmental Protection Group (TUSCH)"-project "Impacts from Technical Activities on the Deep-Sea Ecosystem of the South East Pacific Offshore Peru (ATESEPP)" were devoted to the assembly of such data. Based on the German technical approach for deep-sea mining, the possible environmental impacts by a miner were estimated, the impacts on the seafloor were simulated and investigated by tests with large volume undisturbed sediment samples on board the research vessel and in the laboratory, and the results were evaluated and extrapolated. This report gives a comprehensive presentation of the physical problems, the technical approach, and the results of these investigations.

Boldness in a deep sea hermit crab to simulated tactile predator attacks is unaffected by ocean acidification

NASA Astrophysics Data System (ADS)

Kim, Tae Won; Barry, James P.

2016-09-01

Despite rapidly growing interest in the effects of ocean acidification on marine animals, the ability of deep-sea animals to acclimate or adapt to reduced pH conditions has received little attention. Deep-sea species are generally thought to be less tolerant of environmental variation than shallow-living species because they inhabit relatively stable conditions for nearly all environmental parameters. To explore whether deep-sea hermit crabs ( Pagurus tanneri) can acclimate to ocean acidification over several weeks, we compared behavioral "boldness," measured as time taken to re-emerge from shells after a simulated predatory attack by a toy octopus, under ambient (pH ˜7.6) and expected future (pH ˜7.1) conditions. The boldness measure for crab behavioral responses did not differ between different pH treatments, suggesting that future deep-sea acidification would not influence anti-predatory behavior. However, we did not examine the effects of olfactory cues released by predators that may affect hermit crab behavior and could be influenced by changes in the ocean carbonate system driven by increasing CO2 levels.

A high-resolution multi-proxy record of geo-environmental change during the last deglaciation in the East Sea

NASA Astrophysics Data System (ADS)

Jin, J. H.; Kim, M. J.; Kim, J. H.; Um, I. K.; Bahk, J. J.; Kwon, Y. K.; Lee, K. E.; Khim, B. K.

2009-04-01

The East Sea (the Sea of Japan) is a marginal deep basin, almost enclosed by the landmass of Korea and Japan. It is connected with the North Pacific Ocean only by four small shallow straits, Korea and Tsushima Strait (140 m deep), Tsugaru Strait (130 m deep), Soya Strait (55 m deep) and Tartar Strait (12 m deep). For the glacial periods such as the last glaciation, the sea has experienced a large magnitude of sea level fall reinforcing isolation of the sea from the open ocean. The sea level falls can be recognized by presence of dark sediment layers whereas values of oxygen isotope on foraminfera tests are not well accordant with those recorded in open oceans. A 20 m-long sediment core was raised from a deep borehole located on the southern slope of the East Sea where sedimentation rates exceed 0.3 mm/yr for the last deglaciation period. The core was analyzed at a dense interval (ca. 5 cm) to reveal vertical variation of opal content, del values of oxygen and carbon, TOC and CaCO3 content and C/N ratio. Among them, the opal content somewhat mimics the trend of del value of oxygen isotopes in open oceans: low during the last glacial period, increase during the deglaciation and high in Holocene. A sharp negative depression also occurs during the Younger Dryas event. Hence the opal content could be a good proxy record for the environmental change during late Pleistocene to Holocene. A large-scale negative depression of the opal content is also shown during Holocene. The depression is not well matched with the trend of oxygen isotope records in open oceans, suggestive of a particular event in this local area.

APL-UW Deep Water Propagation 2015-2017: Philippine Sea Data Analysis

DTIC Science & Technology

2015-09-30

DISTRIBUTION STATEMENT A: Approved for public release: distribution is unlimited APL-UW Deep Water Propagation 2015-2017: Philippine Sea Data...the fundamental statistics of broadband low-frequency acoustical signals evolve during propagation through a dynamically-varying deep ocean. OBJECTIVES...Current models of signal randomization over long ranges in the deep ocean were developed for and tested in the North Pacific Ocean gyre. The

Deep nitrogen acquisition in warming permafrost soils: Contributions of belowground plant traits and fungal symbioses in the permafrost carbon feedback to climate

NASA Astrophysics Data System (ADS)

Hartnett, H. E.; Palta, M. M.; Grimm, N. B.; Ruhi, A.; van Shaijik, M.

2016-12-01

Tempe Town Lake (TTL) is a hydrologically-regulated reservoir in Tempe, Arizona. The lake has high primary production and receives dissolved organic carbon (DOC) from rainfall, storm flow, and upstream river discharge. We applied an ARIMA time-series model to a three-year period for which we have high-frequency chemistry, meteorology, and streamflow data and analyzed external (rainfall, stream flow) and internal (dissolved O2) drivers of DOC content and composition. DOC composition was represented by fluorescence-based indices (fluorescence index, humification index, freshness) related to DOC source (microbially- vs. terrestrially-derived) and reactivity DOC. Patterns in DOC concentration and composition suggest carbon cycling in the lake responds to both meteorological events and to anthropogenic activity. The fluorescence-derived DOC composition is consistent with seasonally-distinct inputs of algal- and terrestrially-derived carbon. For example, Tempe Town Lake is supersaturated in O2 over 70% of the time, suggesting the system is autotrophic and primary productivity (i.e., O2 saturation state) was the strongest driver of DOC concentration. In contrast, external drivers (rainfall pattern, streamflow) were the strongest determinants of DOC composition. Biological processes (e.g., algal growth) generate carbon in the lake during spring and summer, and high Fluorescence Index and Freshness values at this time are indicative of algal-derived material; these parameters generally decrease with rain or flow suggesting algal-derived carbon is diluted by external water inputs. During dry periods, carbon builds up on the land surface and subsequent rainfall events deliver terrestrial carbon to the lake. Further evidence that rain and streamflow deliver land-derived material are increases in the Humification Index (an indicator of terrestrial material) following rain/flow events. Our results indicate that Tempe Town Lake generates autochthonous carbon and has the capacity to process allochthonous carbon from the urban environment. Ongoing work is comparing these results to other periods in the 10-year time series to test if the driver-DOC relationships are robust over longer time-scales and evaluating how changes in lake management and climate have altered DOC over time.

Deep trees: Woodfall biodiversity dynamics in present and past oceans

NASA Astrophysics Data System (ADS)

Sigwart, Julia D.

2017-03-01

Marine deposits of sunken wood provide an important habitat for deep-sea biota, including an extensive wood-endemic invertebrate fauna. These habitats are important in their own right; many species on organic falls are not able to survive in other deep sea ecosystems. Evolutionary transitions of species among various chemosynthesis-based ecosystems does not proceed deliberately from organic falls toward hydrothermal vents. Polyplacophoran molluscs (chitons) are generally rare in deep-sea systems but are found in comparatively high diversity and abundance on tropical sunken wood. A new time-calibrated phylogeny for the predominantly deep-sea order Lepidopleurida shows the chiton lineages found in sunken wood habitats do not comprise a single clade or radiation, but represents a minimum of three independent radiations in the Pacific alone. Most marine invertebrate groups diversified in the deep sea following the end Cretaceous extinction event; by contrast, sunken-wood chitons may have persisted in these habitats for longer than other animals. Fossil chitons from the early Carboniferous (ca. 350 Mya) have strong similarities to modern wood-endemic taxa, yet the common ancestor of living Lepidopleurida occurred much later in the Triassic and did not apparently rely on woodfall. Clades within Lepidopleurida that occupy wood habitats in the tropical Pacific probably arose in the Jurassic, which corresponds to evidence from the fossil record, but with an additional separate colonisation more recently in the early Paleogene. Wood-endemic chiton species encompass multiple independent evolutionary origins of co-occurring wood species, and these separate lineages correspond to differences in micohabitat and feeding strategies. These patterns demonstrate the ongoing evolutionary linkages between terrestrial and deep marine environments, and the opportunistic adaptations of deep-sea organisms.

Vadose Zone Flow and Transport of Dissolved Organic Carbon at Multiple Scales in Humid Regimes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jardine, Philip M; Mayes, Melanie; Mulholland, Patrick J

2006-06-01

Scientists must embrace the necessity to offset global CO{sub 2} emissions regardless of politics. Efforts to enhance terrestrial organic carbon sequestration have traditionally focused on aboveground biomass and surface soils. An unexplored potential exists in thick lower horizons of widespread, mature soils such as Alfisols, Ultisols, and Oxisols. We present a case study of fate and transport of dissolved organic carbon (DOC) in a highly weathered Ultisol, involving spatial scales from the laboratory to the landscape. Our objectives were to interpret processes observed at various scales and provide an improved understanding of coupled hydrogeochemical mechanisms that control DOC mobility andmore » sequestration in deep subsoils within humid climatic regimes. Our approach is multiscale, using laboratory-scale batch and soil columns (0.2 by 1.0 m), an in situ pedon (2 by 2 by 3 m), a well-instrumented subsurface facility on a subwatershed (0.47 ha), and ephemeral and perennial stream discharge at the landscape scale (38.4 ha). Laboratory-scale experiments confirmed that lower horizons have the propensity to accumulate DOC, but that preferential fracture flow tends to limit sequestration. Intermediate-scale experiments demonstrated the beneficial effects of C diffusion into soil micropores. Field- and landscape-scale studies demonstrated coupled hydrological, geochemical, and microbiological mechanisms that limit DOC sequestration, and their sensitivity to local environmental conditions. Our results suggest a multi-scale approach is necessary to assess the propensity of deep subsoils to sequester organic C in situ. By unraveling fundamental organic C sequestration mechanisms, we improve the conceptual and quantitative understanding needed to predict and alter organic C budgets in soil systems.« less

Influence of traditional agricultural practices on mobilization of arsenic from sediments to groundwater in Bengal delta.

PubMed

Farooq, S H; Chandrasekharam, D; Berner, Z; Norra, S; Stüben, D

2010-11-01

In the wake of the idea that surface derived dissolved organic carbon (DOC) plays an important role in the mobilization of arsenic (As) from sediments to groundwater and may provide a vital tool in understanding the mechanism of As contamination (mobilization/fixation) in Bengal delta; a study has been carried out. Agricultural fields that mainly cultivate rice (paddy fields) leave significantly large quantities of organic matter/organic carbon on the surface of Bengal delta which during monsoon starts decomposing and produces DOC. The DOC thus produced percolates down with rain water and mobilizes As from the sediments. Investigations on sediment samples collected from a paddy field clearly indicate that As coming on to the surface along with the irrigation water accumulates itself in the top few meters of sediment profile. The column experiments carried out on a 9 m deep sediment profile demonstrates that DOC has a strong potential to mobilize As from the paddy fields and the water recharging the aquifer through such agricultural fields contain As well above the WHO limit thus contaminating the shallow groundwater. Experiment also demonstrates that decay of organic matter induces reducing condition in the sediments. Progressively increasing reducing conditions not only prevent the adsorption of As on mineral surfaces but also cause mobilization of previously sorbed arsenic. There seems to be a cyclic pattern where As from deeper levels comes to the surface with irrigational water, accumulates itself in the sediments, and ultimately moves down to the shallow groundwater. The extensive and continual exploitation of intermediate/deep groundwater accelerates this cyclic process and helps in the movement of shallow contaminated groundwater to the deeper levels. Copyright © 2010 Elsevier Ltd. All rights reserved.

Seasonal variations in dissolved organic matter composition using absorbance and fluorescence spectroscopy in the Dardanelles Straits - North Aegean Sea mixing zone

NASA Astrophysics Data System (ADS)

Pitta, Elli; Zeri, Christina; Tzortziou, Maria; Mousdis, George; Scoullos, Michael

2017-10-01

The Dardanelles Straits - North Aegean Sea mixing zone is the area where the less saline waters of Black Sea origin supply organic material to the oligotrophic Mediterranean Sea. The objective of this work was to assess the seasonal dynamics of dissolved organic matter (DOM) in this region based on the optical properties (absorbance and fluorescence). By combining excitation-emission fluorescence with parallel factor analysis (EEM-PARAFAC), four fluorescent components were identified corresponding to three humic - like components and one amino acid - like. The latter was dominant during all seasons. Chromophoric DOM (CDOM) and dissolved organic carbon (DOC) were found to be strongly coupled only in early spring when conservative conditions prevailed and the two water masses present (Black Sea Waters - BSW and Levantine Waters - LW) could be identified by their absorption coefficients (a300) and spectral slopes S275-295. In summer and autumn the relationships collapsed. During summer two features appear to dominate the dynamics of CDOM: i) photodegradation that acts as an important sink for both the absorbing DOM and the terrestrially derived fluorescent humic substances and ii) the release of marine humic like fluorescent substances from bacterial transformation of DOM. Autumn results revealed a source of fluorescent CDOM of high molecular weight, which was independent of water mass sources and related to particle and sedimentary processes. The removal of the amino acid-like fluorescence during autumn provided evidence that although DOC was found to accumulate under low inorganic nutrient conditions, dissolved organic nitrogenous compounds could serve as bacterial substrate.

A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data

PubMed Central

Kitahara, Marcelo V.; Cairns, Stephen D.; Stolarski, Jarosław; Blair, David; Miller, David J.

2010-01-01

Background Classical morphological taxonomy places the approximately 1400 recognized species of Scleractinia (hard corals) into 27 families, but many aspects of coral evolution remain unclear despite the application of molecular phylogenetic methods. In part, this may be a consequence of such studies focusing on the reef-building (shallow water and zooxanthellate) Scleractinia, and largely ignoring the large number of deep-sea species. To better understand broad patterns of coral evolution, we generated molecular data for a broad and representative range of deep sea scleractinians collected off New Caledonia and Australia during the last decade, and conducted the most comprehensive molecular phylogenetic analysis to date of the order Scleractinia. Methodology Partial (595 bp) sequences of the mitochondrial cytochrome oxidase subunit 1 (CO1) gene were determined for 65 deep-sea (azooxanthellate) scleractinians and 11 shallow-water species. These new data were aligned with 158 published sequences, generating a 234 taxon dataset representing 25 of the 27 currently recognized scleractinian families. Principal Findings/Conclusions There was a striking discrepancy between the taxonomic validity of coral families consisting predominantly of deep-sea or shallow-water species. Most families composed predominantly of deep-sea azooxanthellate species were monophyletic in both maximum likelihood and Bayesian analyses but, by contrast (and consistent with previous studies), most families composed predominantly of shallow-water zooxanthellate taxa were polyphyletic, although Acroporidae, Poritidae, Pocilloporidae, and Fungiidae were exceptions to this general pattern. One factor contributing to this inconsistency may be the greater environmental stability of deep-sea environments, effectively removing taxonomic “noise” contributed by phenotypic plasticity. Our phylogenetic analyses imply that the most basal extant scleractinians are azooxanthellate solitary corals from deep-water, their divergence predating that of the robust and complex corals. Deep-sea corals are likely to be critical to understanding anthozoan evolution and the origins of the Scleractinia. PMID:20628613

Processes governing transient responses of the deep ocean buoyancy budget to a doubling of CO2

NASA Astrophysics Data System (ADS)

Palter, J. B.; Griffies, S. M.; Hunter Samuels, B. L.; Galbraith, E. D.; Gnanadesikan, A.

2012-12-01

Recent observational analyses suggest there is a temporal trend and high-frequency variability in deep ocean buoyancy in the last twenty years, a phenomenon reproduced even in low-mixing models. Here we use an earth system model (GFDL's ESM2M) to evaluate physical processes that influence buoyancy (and thus steric sea level) budget of the deep ocean in quasi-steady state and under a doubling of CO2. A new suite of model diagnostics allows us to quantitatively assess every process that influences the buoyancy budget and its temporal evolution, revealing surprising dynamics governing both the equilibrium budget and its transient response to climate change. The results suggest that the temporal evolution of the deep ocean contribution to sea level rise is due to a diversity of processes at high latitudes, whose net effect is then advected in the Eulerian mean flow to mid and low latitudes. In the Southern Ocean, a slowdown in convection and spin up of the residual mean advection are approximately equal players in the deep steric sea level rise. In the North Atlantic, the region of greatest deep steric sea level variability in our simulations, a decrease in mixing of cold, dense waters from the marginal seas and a reduction in open ocean convection causes an accumulation of buoyancy in the deep subpolar gyre, which is then advected equatorward.

Blood Oxygen Conservation in Diving Sea Lions: How Low Does Oxygen Really Go?

DTIC Science & Technology

2014-09-30

arterial saturations during dives as long as 10 min (Meir and Ponganis 2009). It is also notable that a severe bradycardia during descent occurs in deep...are not completely depleted in even the longest of sea lion dives. The severe bradycardia during deep dives contributes to the preservation of the...3332-3341. McDonald, B.I., and P.J. Ponganis. 2014. Deep-diving sea lions exhibit extreme bradycardia in long- duration dives. Journal of Experimental

Solubility and leaching risks of organic carbon in paddy soils as affected by irrigation managements.

PubMed

Xu, Junzeng; Yang, Shihong; Peng, Shizhang; Wei, Qi; Gao, Xiaoli

2013-01-01

Influence of nonflooding controlled irrigation (NFI) on solubility and leaching risk of soil organic carbon (SOC) were investigated. Compared with flooding irrigation (FI) paddies, soil water extractable organic carbon (WEOC) and dissolved organic carbon (DOC) in NFI paddies increased in surface soil but decreased in deep soil. The DOC leaching loss in NFI field was 63.3 kg C ha⁻¹, reduced by 46.4% than in the FI fields. It indicated that multi-wet-dry cycles in NFI paddies enhanced the decomposition of SOC in surface soils, and less carbon moved downward to deep soils due to less percolation. That also led to lower SOC in surface soils in NFI paddies than in FI paddies, which implied that more carbon was released into the atmosphere from the surface soil in NFI paddies. Change of solubility of SOC in NFI paddies might lead to potential change in soil fertility and sustainability, greenhouse gas emission, and bioavailability of trace metals or organic pollutants.

The Effects of Permafrost Thaw on Organic Matter Quality and Availability Along a Hill Slope in Northeastern Siberia

NASA Astrophysics Data System (ADS)

Connolly, C. T.; Spawn, S.; Ludwig, S.; Schade, J. D.; Natali, S.

2014-12-01

Climate warming and permafrost thaw in northeastern Siberia are expected to change the quantity and quality of organic matter (OM) transported through watersheds, releasing previously frozen carbon (C) to biologically available pool. Hill slopes have shown to influence the distribution of OM, resulting in a downhill accumulation of available C and nutrients relative to uphill. Here we examine how future permafrost thaw will change OM quality and availability along a hill slope in a larch-dominated watershed. We collected soils from the thawed organic and mineral layers, and 1m deep permafrost cores for dissolved organic C (DOC) and total dissolved N (TDN), C composition from measures of colored dissolved organic matter (CDOM), DOC lability from biodegradable DOC (BDOC) incubations, C and nutrient availability from extracellular-enzyme assays (EEA's), and microbial respiration from aerobic soil incubations. Here we show that organic soils (O), in comparison to mineral soils (M) and permafrost (P) are the most abundant source of C (avg O DOC: 51.6mg/L), exhibiting low molecular complexity (avg O SUVA254: 4.05) and high quality. Evidence suggests permafrost OM may be an equally abundant, and more labile source of C than mineral soils (highest P DOC: 16.1 mg/L, lowest P SUVA254: 6.32; median M DOC: 18.5 mg/L, median M SUVA254: 24.0). Furthermore, we demonstrate that there may be a positive relationship in the rate of C mineralization and distance downhill, showing 15-30% greater CO2 production/gC downhill relative to uphill. Evidence also supports a similar relationship in permafrost DOC content and molecular complexity, showing more DOC of a lower complexity further downhill. This indicates DOC transport may have been occurring through the active layer and downhill during ice-rich permafrost formation, and may supply a labile source of carbon to lowland areas and adjacent stream networks upon thaw.

Potential for long-term transfer of dissolved organic carbon from riparian zones to streams in boreal catchments.

PubMed

Ledesma, José L J; Grabs, Thomas; Bishop, Kevin H; Schiff, Sherry L; Köhler, Stephan J

2015-08-01

Boreal regions store most of the global terrestrial carbon, which can be transferred as dissolved organic carbon (DOC) to inland waters with implications for both aquatic ecology and carbon budgets. Headwater riparian zones (RZ) are important sources of DOC, and often just a narrow 'dominant source layer' (DSL) within the riparian profile is responsible for most of the DOC export. Two important questions arise: how long boreal RZ could sustain lateral DOC fluxes as the sole source of exported carbon and how its hydromorphological variability influences this role. We estimate theoretical turnover times by comparing carbon pools and lateral exports in the DSL of 13 riparian profiles distributed over a 69 km(2) catchment in northern Sweden. The thickness of the DSL was 36 ± 18 (average ± SD) cm. Thus, only about one-third of the 1-m-deep riparian profile contributed 90% of the lateral DOC flux. The 13 RZ exported 8.7 ± 6.5 g C m(-2) year(-1) , covering the whole range of boreal stream DOC exports. The variation could be explained by local hydromorphological characteristics including RZ width (R(2) = 0.90). The estimated theoretical turnover times were hundreds to a few thousands of years, that is there is a potential long-lasting supply of DOC. Estimates of net ecosystem production in the RZ suggest that lateral fluxes, including both organic and inorganic C, could be maintained without drawing down the riparian pools. This was supported by measurements of stream DO(14) C that indicated modern carbon as the predominant fraction exported, including streams disturbed by ditching. The transfer of DOC into boreal inland waters from new and old carbon sources has a major influence on surface water quality and global carbon balances. This study highlights the importance of local variations in RZ hydromorphology and DSL extent for future DOC fluxes under a changing climate. © 2015 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Tracing river runoff and DOC over the East Siberian Shelf using in situ CDOM measurements

NASA Astrophysics Data System (ADS)

Pugach, Svetlana; Semiletov, Igor; Pipko, Irina

2010-05-01

The Great Siberian Rivers integrate meteorological and hydrological changes in their watersheds and play a significant role in the physical and biogeochemical regime of the Arctic Ocean through transport of fresh water (FW) and carbon into the sea. Since 1994, the Laboratory of Arctic Research POI in cooperation with the IARC UAF investigate the fresh water and carbon fluxes in the Siberian Arctic land-shelf system with the special emphasize in the East Siberian Arctic shelf (ESAS) which represents the widest and shallowest continental shelf in the World Ocean, yet it is still poorly explored. The East Siberian Sea is influenced by water exchange from the eastern Laptev Sea (where local shelf waters are diluted mostly by Lena River discharge) and by inflow of Pacific waters from the Chukchi Sea. This region is characterized by the highest rate of coastal erosion and significant volume of the riverine discharge and exhibits the largest gradients in all oceanographic parameters observed for the entire Arctic Ocean. Here we demonstrate a connection among Chromophoric (or Colored) Dissolved Organic Matter (CDOM) which represents the colored fraction of Dissolved Organic Carbon (DOC), salinity, and pCO2. Our data have documented strong linear correlations between salinity and CDOM in the near shore zone strongly influenced by riverine runoff. Correlation coefficient between CDOM and salinity in surface waters was equal to -0.94, -0.94 and -0.95 for surface water stations in September of 2003, 2004, and 2005, respectively. Combined analysis of CDOM and DOC data demonstrated a high degree of correlation between these parameters (r=0.96). Such close connection between these characteristics of waters in this region makes it possible to restore the distribution of DOC according to our original CDOM data of the profiling systems, such as CTD-Seabird equipped by WETStar CDOM fluorimeter. It is shown that the CDOM can be used as a conservative tracer to follow the transport and fate of FW across the Arctic shelf through a combination of remote sensing and field observations. This work accomplished under auspice of the Russian Academy of Sciences, NOAA, US National Science Foundation, and Russian Foundation for Basic Research. Future work will be targeted towards a key, unresolved issue of climate change in the Arctic which can be cast as a scientific question that is fundamentally cross-disciplinary and synthetic: How does the Arctic hydrological and carbon cycle respond to global change?

Testing deep-sea biodiversity paradigms on abyssal nematode genera and Acantholaimus species

NASA Astrophysics Data System (ADS)

Lins, Lidia; da Silva, Maria Cristina; Neres, Patrícia; Esteves, André Morgado; Vanreusel, Ann

2018-02-01

Biodiversity patterns in the deep sea have been extensively studied in the last decades. In this study, we investigated whether reputable concepts in deep-sea ecology also explain diversity and distribution patterns of nematode genera and species in the abyss. Among them, three paradigms were tackled: (1) the deep sea is a highly diverse environment at a local scale, while on a regional and even larger geographical scale, species and genus turnover is limited; (2) the biodiversity of deep-sea nematode communities changes with the nature and amount of organic matter input from the surface; and (3) patch-mosaic dynamics of the deep-sea environment drive local diversity. To test these hypotheses, diversity and density of nematode assemblages and of species of the genus Acantholaimus were studied along two abyssal E-W transects. These two transects were situated in the Southern Ocean ( 50°S) and the North Atlantic ( 10°N). Four different hierarchical scales were used to compare biodiversity: at the scale of cores, between stations from the same region, and between regions. Results revealed that the deep sea harbours a high diversity at a local scale (alpha diversity), but that turnover can be shaped by different environmental drivers. Therefore, these results question the second part of the paradigm about limited species turnover in the deep sea. Higher surface primary productivity was correlated with greater nematode densities, whereas diversity responses to the augmentation of surface productivity showed no trend. Areas subjected to a constant and low food input revealed similar nematode communities to other oligotrophic abyssal areas, while stations under high productivity were characterized by different dominant genera and Acantholaimus species, and by a generally low local diversity. Our results corroborate the species-energy hypothesis, where productivity can set a limit to the richness of an ecosystem. Finally, we observed no correlation between sediment variability and local diversity. Although differences in sediment variability were significant across stations, these had to be considered without effect on the nematode community structure in the studied abyssal areas.

Using Argo-O2 data to examine the impact of deep-water formation events on oxygen uptake in the Labrador Sea

NASA Astrophysics Data System (ADS)

Wolf, M. K.; Hamme, R. C.; Gilbert, D.; Yashayaev, I.

2016-02-01

Deep-water formation allows the deep ocean to communicate with the atmosphere, facilitating exchanges of heat as well as important gases such as CO2 and oxygen. The Labrador Sea is the most studied location of deep convection in the North Atlantic Ocean and a strong contributor to the global thermohaline circulation. Since there are no internal sources of oxygen below the euphotic zone, deep-water formation is vital for oxygen transport to the deep ocean. Recent studies document large interannual variability in the strength and depth of convection in the Labrador Sea, from mixed layers of 100m to greater than 1000m. A weakening of this deep convection starves the deep ocean of oxygen, disrupting crucial deep sea biological processes, as well as reducing oceanic CO2 uptake and ocean circulation. We used data from the extensive Argo float network to examine these deep-water formation events in the Labrador Sea. The oxygen optodes onboard many Argo floats suffer from biases whose amplitude must be determined; therefore we investigated and applied various optode calibration methods. Using calibrated vertical profiles of oxygen, temperature, and salinity, we observed the timing, magnitude, and location of deep convection, restratification, and spring phytoplankton blooms. In addition, we used surface oxygen values along with NCEP wind speeds to calculate the air-sea oxygen flux using a range of air-sea gas exchange parameterizations. We then compared this oxygen flux to the rate of change of the measured oxygen inventory. Where the inventory and flux did not agree, we identified other oceanic processes such as biological activity or lateral advection of water masses occurring, or advection of the float itself into a new area. The large role that horizontal advection of water or the float has on oxygen uptake and cycling leads us to conclude that this data cannot be easily interpreted as a 1-D system. Oxygen exchanges with the atmosphere at a faster rate than CO2, is more affected by bubble injection, and reacts differently to temperature change. Oxygen is also produced and consumed by photosynthesis and respiration respectively at a specific ratio to CO2. These properties enable us to use oxygen as a separate constraint from carbon to determine the effect these various processes have on gas cycling, and the global ocean circulation.

Another bipolar deep-sea anemone: new species of Iosactis (Actiniaria, Endomyaria) from Antarctica

NASA Astrophysics Data System (ADS)

Rodríguez, Estefanía

2012-06-01

A new species of deep-sea burrowing sea anemone is described and illustrated from Antarctica. Iosactis antarctica sp. nov. is characterised by easily deciduous tentacles with sphincters in the base, smooth column, endodermal marginal sphincter, same mesenteries proximally and distally, 24 perfect mesenteries regularly arranged, diffuse retractor musculature and basilar muscles well developed. Iosactis antarctica sp. nov. is the second species of the deep-sea abyssal genus Iosactis; it differs from I. vagabunda in internal anatomy, cnidae and geographic distribution. The description of I. antarctica sp. nov. provides the opportunity to revaluate the morphology of the proximal end of this genus.

Five Hundred and Seventy Three Holes in the Bottom of the Sea-Some Results From Seven Years of Deep-Sea Drilling

ERIC Educational Resources Information Center

Davies, T. A.

1976-01-01

Described are the background, operation, and findings of the work of the deep sea drilling vessel Glomar Challenger, which has taken 8,638 core samples from 573 holes at 392 sites on the floor of the Earth's oceans. (SL)

Possible Sea Ice Impacts on Oceanic Deep Convection

NASA Technical Reports Server (NTRS)

Parkinson, C. L.

1984-01-01

Many regions of the world ocean known or suspected to have deep convection are sea-ice covered for at least a portion of the annual cycle. As this suggests that sea ice might have some impact on generating or maintaining this phenomenon, several mechanisms by which sea ice could exert an influence are presented in the following paragraphs. Sea ice formation could be a direct causal factor in deep convection by providing the surface density increase necessary to initiate the convective overturning. As sea ice forms, either by ice accretion or by in situ ice formation in open water or in lead areas between ice floes, salt is rejected to the underlying water. This increases the water salinity, thereby increasing water density in the mixed layer under the ice. A sufficient increase in density will lead to mixing with deeper waters, and perhaps to deep convection or even bottom water formation. Observations are needed to establish whether this process is actually occurring; it is most likely in regions with extensive ice formation and a relatively unstable oceanic density structure.

Modelling the photochemical attenuation pathways of the fibrate drug gemfibrozil in surface waters.

PubMed

Fabbri, Debora; Maurino, Valter; Minella, Marco; Minero, Claudio; Vione, Davide

2017-03-01

Gemfibrozil (GFZ) is a relatively persistent pollutant in surface-water environments and it is rather recalcitrant to biological degradation. The GFZ photochemical lifetimes are relatively short in shallow waters with low levels of dissolved organic carbon (DOC), but they can reach the month-year range in deep and high-DOC waters. The main reason is that GFZ undergoes negligible reaction with singlet oxygen or degradation sensitised by the triplet states of chromophoric dissolved organic matter, which are the usually prevalent photochemical pathways in deep and high-DOC sunlit waters. Nitrate and nitrite scarcely affect the overall GFZ lifetimes, but they can shift photodegradation from direct photolysis to the OH process. These two pathways are the main GFZ phototransformation routes, with the direct photolysis prevailing in shallow environments during summer. Under these conditions the GFZ photochemical lifetimes are also shorter and the environmental significance of photodegradation correspondingly higher. The direct photolysis of GFZ under UVB irradiation yielded several transformation intermediates deriving from oxidation or cleavage of the aliphatic lateral chain. A quinone derivative (2,5-dimethyl-1,4-benzoquinone), a likely oxidation product of the transformation intermediate 2,5-dimethylphenol, is expected to be the most acutely and chronically toxic compound arising from GFZ direct photolysis. Interestingly, literature evidence suggests that the same toxic intermediate would be formed upon OH reaction. Copyright © 2016 Elsevier Ltd. All rights reserved.

Metagenomic Analysis of Genes Encoding Nutrient Cycling Pathways in the Microbiota of Deep-Sea and Shallow-Water Sponges.

PubMed

Li, Zhiyong; Wang, Yuezhu; Li, Jinlong; Liu, Fang; He, Liming; He, Ying; Wang, Shenyue

2016-12-01

Sponges host complex symbiotic communities, but to date, the whole picture of the metabolic potential of sponge microbiota remains unclear, particularly the difference between the shallow-water and deep-sea sponge holobionts. In this study, two completely different sponges, shallow-water sponge Theonella swinhoei from the South China Sea and deep-sea sponge Neamphius huxleyi from the Indian Ocean, were selected to compare their whole symbiotic communities and metabolic potential, particularly in element transformation. Phylogenetically diverse bacteria, archaea, fungi, and algae were detected in both shallow-water sponge T. swinhoei and deep-sea sponge N. huxleyi, and different microbial community structures were indicated between these two sponges. Metagenome-based gene abundance analysis indicated that, though the two sponge microbiota have similar core functions, they showed different potential strategies in detailed metabolic processes, e.g., in the transformation and utilization of carbon, nitrogen, phosphorus, and sulfur by corresponding microbial symbionts. This study provides insight into the putative metabolic potentials of the microbiota associated with the shallow-water and deep-sea sponges at the whole community level, extending our knowledge of the sponge microbiota's functions, the association of sponge- microbes, as well as the adaption of sponge microbiota to the marine environment.

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

USGS Publications Warehouse

Heuer, Verena B.; Pohlman, John W.; Torres, Marta E.; Elvert, Marcus; Hinrichs, Kai-Uwe

2009-01-01

Ocean drilling has revealed the existence of vast microbial populations in the deep subseafloor, but to date little is known about their metabolic activities. To better understand the biogeochemical processes in the deep biosphere, we investigate the stable carbon isotope chemistry of acetate and other carbon-bearing metabolites in sediment pore-waters. Acetate is a key metabolite in the cycling of carbon in anoxic sediments. Its stable carbon isotopic composition provides information on the metabolic processes dominating acetate turnover in situ. This study reports our findings for a methane-rich site at the northern Cascadia Margin (NE Pacific) where Expedition 311 of the Integrated Ocean Drilling Program (IODP) sampled the upper 190 m of sediment. At Site U1329, δ13C values of acetate span a wide range from −46.0‰ to −11.0‰ vs. VPDB and change systematically with sediment depth. In contrast, δ13C values of both the bulk dissolved organic carbon (DOC) (−21.6 ± 1.3‰ vs. VPDB) and the low-molecular-weight compound lactate (−20.9 ± 1.8‰ vs. VPDB) show little variability. These species are interpreted to represent the carbon isotopic composition of fermentation products. Relative to DOC, acetate is up to 23.1‰ depleted and up to 9.1‰ enriched in 13C. Broadly, 13C-depletions of acetate relative to DOC indicate flux of carbon from acetogenesis into the acetate pool while 13C-enrichments of pore-water acetate relative to DOC suggest consumption of acetate by acetoclastic methanogenesis. Isotopic relationships between acetate and lactate or DOC provide new information on the carbon flow and the presence and activity of specific functional microbial communities in distinct biogeochemical horizons of the sediment. In particular, they suggest that acetogenic CO2-reduction can coexist with methanogenic CO2-reduction, a notion contrary to the hypothesis that hydrogen levels are controlled by the thermodynamically most favorable electron-accepting process. Further, the isotopic relationship suggests a relative increase in acetate flow to acetoclastic methanogenesis with depth although its contribution to total methanogenesis is probably small. Our study demonstrates how the stable carbon isotope biogeochemistry of acetate can be used to identify pathways of microbial carbon turnover in subsurface environments. Our observations also raise new questions regarding the factors controlling acetate turnover in marine sediments.

Department of Commerce Semiannual Regulatory Agenda

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-20

... Fishery Management 0648-AY50 Plan 284 Fishing Year 2010 Atlantic Deep-Sea Red Crab Specifications 0648...-AY82 Inseason Adjustments 290 Inseason Adjustment to the FY 2010 Atlantic Deep Sea Red Crab...

How does mesoscale impact deep convection? Answers from ensemble Northwestern Mediterranean Sea simulations.

NASA Astrophysics Data System (ADS)

Waldman, Robin; Herrmann, Marine; Somot, Samuel; Arsouze, Thomas; Benshila, Rachid; Bosse, Anthony; Chanut, Jérôme; Giordani, Hervé; Pennel, Romain; Sevault, Florence; Testor, Pierre

2017-04-01

Ocean deep convection is a major process of interaction between surface and deep ocean. The Gulf of Lions is a well-documented deep convection area in the Mediterranean Sea, and mesoscale dynamics is a known factor impacting this phenomenon. However, previous modelling studies don't allow to address the robustness of its impact with respect to the physical configuration and ocean intrinsic variability. In this study, the impact of mesoscale on ocean deep convection in the Gulf of Lions is investigated using a multi-resolution ensemble simulation of the northwestern Mediterranean sea. The eddy-permitting Mediterranean model NEMOMED12 (6km resolution) is compared to its eddy-resolving counterpart with the 2-way grid refinement AGRIF in the northwestern Mediterranean (2km resolution). We focus on the well-documented 2012-2013 period and on the multidecadal timescale (1979-2013). The impact of mesoscale on deep convection is addressed in terms of its mean and variability, its impact on deep water transformations and on associated dynamical structures. Results are interpreted by diagnosing regional mean and eddy circulation and using buoyancy budgets. We find a mean inhibition of deep convection by mesoscale with large interannual variability. It is associated with a large impact on mean and transient circulation and a large air-sea flux feedback.

Importance of the Gulf of Aqaba for the formation of bottom water in the Red Sea

NASA Astrophysics Data System (ADS)

Plähn, Olaf; Baschek, Burkard; Badewien, Thomas H.; Walter, Maren; Rhein, Monika

2002-08-01

Conductivity-temperature-depth tracer and direct current measurements collected in the northern Red Sea in February and March 1999 are used to study the formation of deep and bottom water in that region. Historical data showed that open ocean convection in the Red Sea can contribute to the renewal of intermediate or deep water but cannot ventilate the bottom water. The observations in 1999 showed no evidence for open ocean convection in the Red Sea during the winter 1998/1999. The overflow water from the Gulf of Aqaba was found to be the densest water mass in the northern Red Sea. An anomaly of the chlorofluorocarbon component CFC-12 observed in the Gulf of Aqaba and at the bottom of the Red Sea suggests a strong contribution of this water mass to the renewal of bottom water in the Red Sea. The CFC data obtained during this cruise are the first available for this region. Because of the new signal, it is possible for the first time to subdivide the deep water column into deep and bottom water in the northern Red Sea. The available data set also shows that the outflow water from the Gulf of Suez is not dense enough to reach down to the bottom of the Red Sea but was found about 250 m above the bottom.

Natural Products from Deep-Sea-Derived Fungi ̶ A New Source of Novel Bioactive Compounds?

PubMed

Daletos, Georgios; Ebrahim, Weaam; Ancheeva, Elena; El-Neketi, Mona; Song, Weiguo; Lin, Wenhan; Proksch, Peter

2018-01-01

Over the last two decades, deep-sea-derived fungi are considered to be a new source of pharmacologically active secondary metabolites for drug discovery mainly based on the underlying assumption that the uniqueness of the deep sea will give rise to equally unprecedented natural products. Indeed, up to now over 200 new metabolites have been identified from deep-sea fungi, which is in support of the statement made above. This review summarizes the new and/or bioactive compounds reported from deepsea- derived fungi in the last six years (2010 - October 2016) and critically evaluates whether the data published so far really support the notion that these fungi are a promising source of new bioactive chemical entities. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

In Brief: Deep-sea observatory

NASA Astrophysics Data System (ADS)

Showstack, Randy

2008-11-01

The first deep-sea ocean observatory offshore of the continental United States has begun operating in the waters off central California. The remotely operated Monterey Accelerated Research System (MARS) will allow scientists to monitor the deep sea continuously. Among the first devices to be hooked up to the observatory are instruments to monitor earthquakes, videotape deep-sea animals, and study the effects of acidification on seafloor animals. ``Some day we may look back at the first packets of data streaming in from the MARS observatory as the equivalent of those first words spoken by Alexander Graham Bell: `Watson, come here, I need you!','' commented Marcia McNutt, president and CEO of the Monterey Bay Aquarium Research Institute, which coordinated construction of the observatory. For more information, see http://www.mbari.org/news/news_releases/2008/mars-live/mars-live.html.

The Sulu Sea as Carbon Dioxide Sink

NASA Astrophysics Data System (ADS)

Ferrera, C. M.; Jacinto, G. S.; Chen, C. T. A.

2016-12-01

The Sulu Sea, one of the marginal seas in the West Pacific and the largest internal sea in the Philippines, is characterized by its unique deep water ventilation pattern and high sediment organic carbon and CaCO3 content. Studies on the dissolved CO2 system in the Sulu Sea have remarkably shown that anthropogenic CO2 has already penetrated to the bottom of this 5km-deep basin, albeit limited to a dataset from a single station in December 1996. To further understand the role of this tropical marginal sea as CO2 sink and to assess its behavior as a CO2 sink during the 11-year period, water samples for dissolved CO2 parameters from two deep stations of high productivity and low productivity were collected in December 2007/January 2008 and were compared with the 1996 data. Results suggest that the surface waters in the low productivity region might have been acidifying at a rate of -0.0012 pH unit yr-1. Atmospheric CO2 increased at +1.9 ppmv yr-1 and seawater fCO2 at +3.30 μatm yr-1. Through deep water ventilation, anthropogenic CO2 has penetrated the water column thereby making the deeper waters a sink of anthropogenic CO2. But then the presence and dissolution of CaCO3 deposits at the sea floor and along the Sulu Sea slopes as a result of the reaction with this anthropogenic CO2 probably neutralizes the acidification at depths as shown by the increase in total alkalinity (+0.57 μmol kg-1 yr-1), and facilitates further uptake of CO2 from the atmosphere. Therefore, productivity at Sulu Sea surface waters results to sequestration of CO2 from the atmosphere to the sediment sink through organic carbon and CaCO3 deposits. While high temperature and low productivity surface waters make the Sulu Sea a source of CO2 to the atmosphere, ventilation patterns make the deep waters of the Sulu Sea an efficient sink for anthropogenic CO2. Given the larger area occupied by the CO2 sink deep waters compared to the CO2 source surface waters including an upwelling area, the Sulu Sea could possibly be a "net" CO2 sink, an important contribution to the otherwise underestimated inventory of CO2 from marginal seas.

Transformations and Fates of Terrigenous Dissolved Organic Matter in River-influenced Ocean Margins

NASA Astrophysics Data System (ADS)

Fichot, Cedric G.

Rivers contribute about 0.25 Pg of terrigenous dissolved organic carbon (tDOC) to the ocean each year. The fate and transformations of this material have important ramifications for the metabolic state of the ocean, air-sea CO2 exchange, and the global carbon cycle. Stable isotopic compositions and terrestrial biomarkers suggest tDOC must be efficiently mineralized in ocean margins. Nonetheless, the extent of tDOC mineralization in these environments remains unknown, as no quantitative estimate is available. The complex interplay of biogeochemical and physical processes in these systems compounded by the limited practicality of chemical proxies (organic biomarkers, isotopic compositions) make the quantification of tDOC mineralization in these dynamic systems particularly challenging. In this dissertation, new optical proxies were developed (Chapters 1 and 2) and facilitated the first quantitative assessment of tDOC mineralization in a dynamic river-influenced ocean margin (Chapter 3) and the monitoring of continental runoff distributions in the coastal ocean using remote sensing (Chapter 4). The optical properties of chromophoric dissolved organic matter (CDOM) were used as optical proxies for dissolved organic carbon concentration ([DOC]) and %tDOC. In both proxies, the CDOM spectral slope coefficient ( S275-295) was exploited for its informative properties on the chemical nature and composition of dissolved organic matter. In the first proxy, a strong relationship between S275-295 and the ratio of CDOM absorption to [DOC] facilitated accurate retrieval (+/- 4%) of [DOC] from CDOM. In the second proxy, the existence of a strong relationship between S275-295 and the DOC-normalized lignin yield facilitated the estimation of the %tDOC from S 275-295. Using the proxies, the tDOC concentration can be retrieved solely from CDOM absorption coefficients (lambda = 275-295 nm) in river-influenced ocean margins. The practicality of optical proxies facilitated the calculation of tDOC mineralization rates on the Louisiana shelf. Seasonal tDOC mass balances for the shelf revealed that between 26% (winter) and 71% (summer) of the mixed layer tDOC is mineralized during its residence on the shelf. Independent approaches further indicated biomineralization accounts for 60% of the tDOC mineralization whereas photomineralization contributes only 8%. The remaining 32% was attributed to the coupled photo-biomineralization. On an annual basis, our results indicated ˜40% of the tDOC discharged by the Mississippi and Atchafalaya rivers to the Louisiana shelf (˜1 Tg tDOC) is mineralized within 2 to 3 months. This extensive mineralization on the shelf is direct evidence ocean margins act as efficient filters of tDOC between the land and ocean. Finally, the amenability of S275-295 to ocean color remote sensing was demonstrated, and facilitates the real-time, synoptic monitoring of tDOC and freshwater runoff in coastal waters. Implementation of this approach provided the first pan-Arctic distributions of tDOC and continental runoff in surface polar waters, and will help understand the manifestations of climate change in this remote region.

Tracing the transport of colored dissolved organic matter in water masses of the Southern Beaufort Sea: relationship with hydrographic characteristics

NASA Astrophysics Data System (ADS)

Matsuoka, A.; Bricaud, A.; Benner, R.; Para, J.; Sempéré, R.; Prieur, L.; Bélanger, S.; Babin, M.

2012-03-01

Light absorption by colored dissolved organic matter (CDOM) [aCDOM(λ)] plays an important role in the heat budget of the Arctic Ocean, contributing to the recent decline in sea ice, as well as in biogeochemical processes. We investigated aCDOM(λ) in the Southern Beaufort Sea where a significant amount of CDOM is delivered by the Mackenzie River. In the surface layer, aCDOM(440) showed a strong and negative correlation with salinity, indicating strong river influence and conservative transport in the river plume. Below the mixed layer, a weak but positive correlation between aCDOM(440) and salinity was observed above the upper halocline, resulting from the effect of removal of CDOM due to brine rejection and lateral intrusion of Pacific summer waters into these layers. In contrast, the relationship was negative in the upper and the lower haloclines, suggesting these waters originated from Arctic coastal waters. DOC concentrations in the surface layer were strongly correlated with aCDOM(440) (r2 = 0.97), suggesting that this value can be estimated in this area, using aCDOM(440) that is retrieved using satellite ocean color data. Implications for estimation of DOC concentrations in surface waters using ocean color remote sensing are discussed.

Fluxes of dissolved organic carbon and nitrogen to the northern Indian Ocean from the Indian monsoonal rivers

NASA Astrophysics Data System (ADS)

Krishna, M. S.; Prasad, V. R.; Sarma, V. V. S. S.; Reddy, N. P. C.; Hemalatha, K. P. J.; Rao, Y. V.

2015-10-01

Dissolved organic carbon (DOC) and nitrogen (DON) were measured in 27 major and medium monsoonal estuaries along the Indian coast during southwest monsoon in order to understand the spatial variability in their concentrations and fluxes to the northern Indian Ocean. A strong spatial variability (~20-fold) in DOC and DON was observed in the Indian monsoonal estuaries due to variable characteristics of the catchment area and volume of discharge. It is estimated that the Indian monsoonal estuaries transport ~2.37 ± 0.47 Tg (1 Tg = 1012 g) of DOC and ~0.41 ± 0.08 Tg of DON during wet period to the northern Indian Ocean. The Bay of Bengal receives 3 times higher DOC and DON (1.82 and 0.30 Tg, respectively) than the Arabian Sea (0.55 and 0.11 Tg). Catchment area normalized fluxes of DOC and DON were found to be higher in the estuaries located in the southwestern than the estuaries from other regions of India. It was attributed to relatively higher soil organic carbon, biomass carbon, and heavy rainfall in catchment areas of the rivers from the former region. It has been noticed that neither catchment area nor discharge volume of the river controls the fluxes of DOC and DON to the northern Indian Ocean. Since the total load of DOC and DON is strongly linked to the volume of discharge, alterations in the freshwater discharge due to natural or anthropogenic activities may have significant influence on organic matter fluxes to the Indian coastal waters and its impact on microbial food web dynamics needs further evaluation.

Dissolved organic carbon and nitrogen release from Holocene permafrost and seasonally frozen soils

NASA Astrophysics Data System (ADS)

Wickland, K.; Waldrop, M. P.; Koch, J. C.; Jorgenson, T.; Striegl, R. G.

2017-12-01

Permafrost (perennially frozen) soils store vast amounts of carbon (C) and nitrogen (N) that are vulnerable to mobilization to the atmosphere as greenhouse gases and to terrestrial and aquatic ecosystems as dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) upon thaw. Such releases will affect the biogeochemistry of arctic and boreal regions, yet little is known about active layer (seasonally frozen) and permafrost source variability that determines DOC and TDN mobilization. We quantified DOC and TDN leachate yields from a range of active layer and permafrost soils in Alaska varying in age and C and N content to determine potential release upon thaw. Soil cores from the upper 1 meter were collected in late winter, when soils were frozen, from three locations representing a range in geographic position, landscape setting, permafrost depth, and soil types across interior Alaska. Two 15 cm-thick segments were extracted from each core: a deep active-layer horizon and a shallow permafrost horizon. Soils were thawed and leached for DOC and TDN yields, dissolved organic matter optical properties, and DOC biodegradability; soils were analyzed for C and N content, and radiocarbon content. Soils had wide-ranging C and N content (<1-44% C, <0.1-2.3% N), and varied in radiocarbon age from 450-9200 years before present - thus capturing typical ranges of boreal and arctic soils. Soil DOC and TDN yields increased linearly with soil C and N content, and decreased with increasing radiocarbon age. However, across all sites DOC and TDN yields were significantly greater from permafrost soils (0.387 ± 0.324 mg DOC g-1 soil; 0.271 ± 0.0271 mg N g-1 soil) than from active layer soils (0.210 ± 0.192 mg DOC g-1 soil; 0.00716 ± 0.00569 mg N g-1 soil). DOC biodegradability increased with increasing radiocarbon age, and was statistically similar for active layer and permafrost soils. Our findings suggest that the continuously frozen state of permafrost soils has preserved higher relative potential DOC and TDN yields compared to seasonally thawed soils exposed to annual leaching and decomposition, and that frozen soils undergo microbial processes that produce labile DOC over time.

78 FR 780 - Investigations Regarding Certifications of Eligibility To Apply for Worker Adjustment Assistance

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-04

... McCann's--a Division of Los Angeles, CA........ 11/29/12 11/28/12 Manitowoc Foodservice (Company). 82191... (Workers)... Sea Tac, WA 11/30/12 11/28/12 [FR Doc. 2012-31663 Filed 1-3-13; 8:45 am] BILLING CODE 4510-FN...

Satellite Ocean Aerosol Retrieval (SOAR) Algorithm Extension to S-NPP VIIRS as Part of the "Deep Blue" Aerosol Project

NASA Astrophysics Data System (ADS)

Sayer, A. M.; Hsu, N. C.; Lee, J.; Bettenhausen, C.; Kim, W. V.; Smirnov, A.

2018-01-01

The Suomi National Polar-Orbiting Partnership (S-NPP) satellite, launched in late 2011, carries the Visible Infrared Imaging Radiometer Suite (VIIRS) and several other instruments. VIIRS has similar characteristics to prior satellite sensors used for aerosol optical depth (AOD) retrieval, allowing the continuation of space-based aerosol data records. The Deep Blue algorithm has previously been applied to retrieve AOD from Sea-viewing Wide Field-of-view Sensor (SeaWiFS) and Moderate Resolution Imaging Spectroradiometer (MODIS) measurements over land. The SeaWiFS Deep Blue data set also included a SeaWiFS Ocean Aerosol Retrieval (SOAR) algorithm to cover water surfaces. As part of NASA's VIIRS data processing, Deep Blue is being applied to VIIRS data over land, and SOAR has been adapted from SeaWiFS to VIIRS for use over water surfaces. This study describes SOAR as applied in version 1 of NASA's S-NPP VIIRS Deep Blue data product suite. Several advances have been made since the SeaWiFS application, as well as changes to make use of the broader spectral range of VIIRS. A preliminary validation against Maritime Aerosol Network (MAN) measurements suggests a typical uncertainty on retrieved 550 nm AOD of order ±(0.03+10%), comparable to existing SeaWiFS/MODIS aerosol data products. Retrieved Ångström exponent and fine-mode AOD fraction are also well correlated with MAN data, with small biases and uncertainty similar to or better than SeaWiFS/MODIS products.

Insertion sequences enrichment in extreme Red sea brine pool vent.

PubMed

Elbehery, Ali H A; Aziz, Ramy K; Siam, Rania

2017-03-01

Mobile genetic elements are major agents of genome diversification and evolution. Limited studies addressed their characteristics, including abundance, and role in extreme habitats. One of the rare natural habitats exposed to multiple-extreme conditions, including high temperature, salinity and concentration of heavy metals, are the Red Sea brine pools. We assessed the abundance and distribution of different mobile genetic elements in four Red Sea brine pools including the world's largest known multiple-extreme deep-sea environment, the Red Sea Atlantis II Deep. We report a gradient in the abundance of mobile genetic elements, dramatically increasing in the harshest environment of the pool. Additionally, we identified a strong association between the abundance of insertion sequences and extreme conditions, being highest in the harshest and deepest layer of the Red Sea Atlantis II Deep. Our comparative analyses of mobile genetic elements in secluded, extreme and relatively non-extreme environments, suggest that insertion sequences predominantly contribute to polyextremophiles genome plasticity.

Deep-water Hydrozoa (Cnidaria: Medusozoa) in the Sea of Japan, collected during the 51st Cruise of R/V Akademik M.A. Lavrentyev, with description Opercularella angelikae, sp. nov.

NASA Astrophysics Data System (ADS)

Stepanjants, Sofia D.

2013-02-01

A report is given about Hydrozoa collected at depths between 455 and 3666 m in the Sea of Japan during the Russian-German expedition on R/V Akademik M.A. Lavrentyev. Ten species were found, with four of them being typical bathyal-abyssal and abyssal zones. A new species, Opercularella angelikae, is described, and it was the dominant hydroid in samples from 970 to 3660 m. Four eurybathic species characteristics of the Sea of Japan were sampled between 455 and 582 m. Abyssal (pseudoabyssal after Andriashev, 1979) hydroid fauna in the Sea of Japan is reported. The hypothesis that an exclusively deep-water fauna is lacking in abyssal regions of the Sea of Japan is disputed. The author's personal opinion considered concerning the borders of 1000 m between shallow and deep hydrozoan species in the Sea of Japan.

Fish debris record the hydrothermal activity in the Atlantis II deep sediments (Red Sea)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oudin, E.; Cocherie, A.

1988-01-01

The REE and U, Th, Zr, Hf, Sc have been analyzed in samples from Atlantis II and Shaban/Jean Charcot Deeps in the Red Sea. The high Zr/Hf ratio in some sediments indicates the presence of fish debris or of finely crystallized apatite. The positive ..sigma..REE vs P/sub 2/O/sub 5/ and ..sigma..REE vs Zr/Hf correlations show that fish debris and finely crystallized apatite are the main REE sink in Atlantis II Deep sediments as in other marine environments. The hydrothermal sediments and the fish debris concentrates have similar REE patterns, characterized by a LREE enrichment and a large positive Eu anomaly.more » This REE pattern is also observed in E.P.R. hydrothermal solutions. Fish debris from marine environments acquire their REE content and signature mostly from sea water during early diagenesis. The hydrothermal REE signature of Atlantis II Deep fish debris indicate that they probably record the REE signature of their hydrothermal sedimentation and diagenetic environment. The different REE signatures of the Shaban/Jean Charcot and Atlantis II Deep hydrothermal sediments suggest a sea water-dominated brine in the Shaban/Jean Charcot Deep as opposed to the predominantly hydrothermal brine in Atlantis II Deep. Atlantis II Deep fish debris are also characterized by their high U but low Th contents. Their low Th contents probably reflect the low Th content of the various possible sources (sea water, brine, sediments). Their U contents are probably controlled by the redox conditions of sedimentation.« less

Holocene glacier and deep water dynamics, Adélie Land region, East Antarctica

NASA Astrophysics Data System (ADS)

Denis, Delphine; Crosta, Xavier; Schmidt, Sabine; Carson, Damien S.; Ganeshram, Raja S.; Renssen, Hans; Bout-Roumazeilles, Viviane; Zaragosi, Sebastien; Martin, Bernard; Cremer, Michel; Giraudeau, Jacques

2009-06-01

This study presents a high-resolution multi-proxy investigation of sediment core MD03-2601 and documents major glacier oscillations and deep water activity during the Holocene in the Adélie Land region, East Antarctica. A comparison with surface ocean conditions reveals synchronous changes of glaciers, sea ice and deep water formation at Milankovitch and sub-Milankovitch time scales. We report (1) a deglaciation of the Adélie Land continental shelf from 11 to 8.5 cal ka BP, which occurred in two phases of effective glacier grounding-line retreat at 10.6 and 9 cal ka BP, associated with active deep water formation; (2) a rapid glacier and sea ice readvance centred around 7.7 cal ka BP; and (3) five rapid expansions of the glacier-sea ice systems, during the Mid to Late Holocene, associated to a long-term increase of deep water formation. At Milankovich time scales, we show that the precessionnal component of insolation at high and low latitudes explains the major trend of the glacier-sea ice-ocean system throughout the Holocene, in the Adélie Land region. In addition, the orbitally-forced seasonality seems to control the coastal deep water formation via the sea ice-ocean coupling, which could lead to opposite patterns between north and south high latitudes during the Mid to Late Holocene. At sub-Milankovitch time scales, there are eight events of glacier-sea ice retreat and expansion that occurred during atmospheric cooling events over East Antarctica. Comparisons of our results with other peri-Antarctic records and model simulations from high southern latitudes may suggest that our interpretation on glacier-sea ice-ocean interactions and their Holocene evolutions reflect a more global Antarctic Holocene pattern.

Identification of the two new, functional actinoporins, CJTOX I and CJTOX II, from the deep-sea anemone Cribrinopsis japonica.

PubMed

Tsutsui, Kenta; Sato, Tomomi

2018-06-15

Actinoporins are pore-forming proteins found in sea anemones. Although we now have a large collection of data on actinoporins, our knowledge is based heavily on those identified in shallow-water anemones. Because the deep sea differs considerably from shallow waters in hydrostatic pressures, temperatures, and the prey composition, the deep-sea actinoporin may have evolved in unique ways. This study, therefore, aimed to obtain new actinoporins in the deep-sea anemone Cribrinopis japonica (Actiniaria, Actiniidae). An actinoporin-like sequence was identified from the previously established C. japonica RNA-Seq database, and the complete length (663 bp) of the deep-sea actinoporin gene, Cjtox I, was obtained. In addition, a similar gene, Cjtox II (666 bp), was also identified from RNA of actinopharynx. CJTOX I and CJTOX II were similar in their primary structures, but CJTOX I lacked one residue in the middle of the protein. There was also a difference in the gene expression in live animals, where only Cjtox I was expressed in tentacles of C. japonica. In the heterologous expression where BL21 (DE3) strain was retransformed with the plasmid containing either Cjtox I or Cjtox II gene, the supernatants of both cell lysates showed hemolytic activity on the equine erythrocytes. Preincubation of the supernatants with sphingomyelin caused reduced activity, implying that the CJTOX I and II would target sphingomyelin as with other actinoporins. Because of the structures similarity to the known actinoporins and the sphingomyelin-inhibitable hemolytic activity, both CJTOX I and II were concluded to be new actinoporins, which were identified for the first time from a deep-sea anemone. Copyright © 2018 Elsevier Ltd. All rights reserved.

The abiotically driven biological pump in the ocean and short-term fluctuations in atmospheric CO 2 contents

NASA Astrophysics Data System (ADS)

Ittekkot, Venugopalan

1993-07-01

Current debates on the significance of the oceanic "biological pump" in the removal of atmospheric CO 2 pay more attention to the act of biological carbon-dioxide fixation (primary productivity) in the sea, but pay less or no attention to the equally relevant aspect of the transfer of the fixed carbon to a sink before its oxidation back to CO 2. The upper ocean obviously disqualifies as a sink for biologically fixed CO 2 because of gas-exchange with the atmosphere. The deep ocean, on the other hand, can be a sink at least at time scales of the ocean turnover. Transfer of newly-fixed CO 2 to the deep sea can be accelerated by abiogenic matter introduced to the sea surface from terrestrial sources. This matter acts as ballast and increases the density and settling rates of aggregates of freshly synthesized organic matter thereby facilitating their rapid removal from the upper ocean. Higher supply of abiogenic matter enhances the sequestering of fresh organic matter and in effect shifts the zone of organic matter remineralization from the upper ocean to the deep sea. Consistent with this abiogenic forcing, the rate of organic matter remineralization and the subsequent storage of the remineralized carbon in the deep sea are linked to bulk fluxes (mass accumulation rates) in the deep sea. This mechanism acts as an "abiotic boost" in the workings of the oceanic "biological pump" and results in an increase in deep sea carbon storage; the magnitude of carbon thus stored could have caused the observed short term fluctuations in atmospheric CO 2-contents during the glacial-interglacial cycles.

Understanding mechanism of sea cucumber Apostichopus japonicus aestivation: Insights from TMT-based proteomic study.

PubMed

Chen, Muyan; Li, Xingke; Zhu, Aijun; Storey, Kenneth B; Sun, Lina; Gao, Tianxiang; Wang, Tianming

2016-09-01

Marine invertebrate aestivation is a unique strategy for summer survival in response to hot marine conditions. The sea cucumber, Apostichopus japonicus, is an excellent model marine invertebrate for studies of environmentally-induced aestivation. In the present study, we used a tandem mass tag (TMT)-coupled LC-MS/MS approach to identify and quantify the global proteome expression profile over the aestivation-arousal cycle of A. japonicus. A total of 3920 proteins were identified from the intestine of sea cucumber. Among them, 630 proteins showed significant differential expression when comparing three conditions of sea cucumbers: non-aestivating (active), deep-aestivation (at least 15days of continuous aestivation), and arousal after aestivation (renewed moving and feeding). Sea cucumbers in deep aestivation showed substantial differentially expressed proteins (143 up-regulated and 267 down-regulated proteins compared with non-aestivating controls). These differentially expressed proteins suggested that protein and phospholipid probably are major fuel sources during hypometabolism and a general attenuation of carbohydrate metabolism was observed during deep aestivation. Differentially expressed proteins also provided the first global picture of a shift in protein synthesis, protein folding, DNA binding, apoptosis, cellular transport and signaling, and cytoskeletal proteins during deep aestivation in sea cucumbers. A comparison of arousal from aestivation with deep aestivation, revealed a general reversal of the changes that occurred in aestivation for most proteins. Western blot detection further validated the significant up-regulation of HSP70 and down-regulation of methyltransferase-like protein 7A-like in deep-aestivation. Our results suggest that there is substantial post-transcriptional regulation of proteins during the aestivation-arousal cycle in sea cucumbers. Copyright © 2016 Elsevier Inc. All rights reserved.

Variations in radiolarian assemblages in the Japan Sea since the Last Glacial Period: implications for paleoceanography Zhi Dong12, Xuefa Shi2, Xinqing Zou1, Jianjun Zou2, Muhong Chen3, Qiang Zhang3, Chendong Ge1,Yanguang Liu21. Nanjing University,China 2. First Institute of Oceanography, China 3. South China Sea Institute of Oceanology, China

NASA Astrophysics Data System (ADS)

Dong, Z.; Shi, X.; Zou, X.; Zou, J. J.; Chen, M.; Zhang, Q.; Ge, C.; Liu, Y.

2017-12-01

Japan Sea is a marginal sea located on the rim of the western Pacific, connecting with the open ocean via key straits with sill depths of less than 130 m, whichis close to the maximum drop of sea level during the Last Glacial Maximum (LGM). Tsushima Strait connects modern JS with neighboring seas and Tsushima Warm Current (TWC), the only warm current flowing into the JS, reaches the northern JS where the cold saline deep wate is formed. Previous studies show that only northern Tsugaru Strait was opened during the last deglaciation, indicating different pattern of water mass exchange between JS and adjacent seas. Few paleoceanographic reconstructions in the southern JS are available to reconstruct the history of inflow of the TWC and deep ventilation. Radiolaria comprises shallow to deep water dwellers, sensitive response to changes in sea water physical and chemical states. It is well known for being preserved in the deep-sea sediments of the North Pacific. In order to decipher the changes of paleoceanography in the JS, here we investigate SST, SSS, deep ventilation using radiolarian assemblages recorded in core KCES1 recovered from the Ulleung Basin. We identified total 108 taxa which have been counted and divided into three categories: TWC, low-salinity and deep water taxa. Changes in radiolaria reveal that the paleoceanographic conditions has changed drastically during the last glacial period. The dominance of low-salinitytaxa indicates low SSS in JS during LGM. For older interval (24-46 ka), low-salinity taxa and TWC taxa could be identified, suggesting both East China Sea Coastal Water, whose volume is higher than Holocene, and TWC flow into the JS. The TWC taxa start to increase at 19 ka, also indicated by negative excursion of TOC δ13C due to the re-open of the Tsushima Strait, coincident with the 19 ka-MWP. The increasing abundance of low-salinity taxa during the B/A warm period, indicated an enhanced influence of river discharge forced by EASM. The enhanced deep ventilation occurred abruptly at 17 ka, caused by the sink of cold and saline water into the deep during the HS 1. While between 13 and 12 ka, high abundance of C.davisiana, one of the dominant species of deep water, inferring the strongest ventilation corresponding to the YD-like event. High abundance of TWC taxa shows the TWC re-enters into the JS during 9-7 ka.

Depths and Ages of Deep-Sea Corals From the Medusa Expedition

NASA Astrophysics Data System (ADS)

Fernandez, D.; Adkins, J. F.; Robinson, L. F.; Scheirer, D.; Shank, T.

2003-12-01

From May-June 2003 we used the DSV Alvin and the RSV Atlantis to collect modern and fossil deep-sea corals from the New England and Muir Seamounts. Our goal was to collect depth transects of corals from a variety of ages to measure paleo chemical profiles in the North Atlantic. Because deep-sea corals can be dated with both U-series and radiocarbon methods, we are especially interested in measuring past D14C profiles to constrain the paleo overturning rate of the deep ocean. We collected over 3,300 fossil Desmophyllum cristagalli individuals, 10s of kgs of Solenosmillia sp. and numerous Enallopsamia rostrata and Caryophilia sp. These samples spanned a depth range from 1,150-2,500 meters and refute the notion that deep-sea corals are too sparsely distributed to be useful for paleoclimate reconstructions. Despite widespread evidence for mass wasting on the seamounts, fossil corals were almost always found in growth position. This observation alleviates some of the concern associated with dredge samples where down-slope transport of samples can not be characterized. Fossil scleractinia were often found to have recruited onto other carbonate skeletons, including large branching gorgonians. The U-series age distribution of these recruitment patterns will constrain how much paleoclimatic time a particular "patch" can represent. In addition, U-series ages, combined with the observed differences in species distribution, will begin to inform our understanding of deep-sea coral biogeography. A lack of modern D. cristagalli on Muir seamount, but an abundance of fossil samples at this site, is the most striking example of changes in oceanic conditions playing a role in where deep-sea corals grow.

Tritium in the western Mediterranean Sea during 1981 Phycemed cruise

NASA Astrophysics Data System (ADS)

Andrie, Chantal; Merlivat, Liliane

1988-02-01

We report on simultaneous hydrological and tritium data taken in the western Mediterranean Sea during April 1981 and which implement our knowledge of the spatial and temporal variability of the convection process occurring in the Northern Basin (Gulf of Lion, Ligurian Sea). The renewal time of the deep waters in the Medoc area is calculated to be 11 ± 2 years using a box-model assymption. An important local phenomenon of "cascading" off the Ebro River near the Spanish coast is, noticeable by the use of tritium data. In the Sardinia Straits area tritium data indicate very active mixing between 100 and 500 m depth. The tritium subsurface maxima in Sardinia Straits suggests the influence of not only the Levantine Intermediate Water (LIW) but also an important shallower component. In waters deeper than 500m, an active mixing occurs between the deep water and the LIW via an intermediate water mass from the Tyrrhenian Sea by "salt-fingering". Assuming a two end-member mixing. We determine the deep tritium content in the Sardinia Channel to be 1.8 TU. For comparison, the deep tritium content of the Northern Basin is equal to 1.3 TU. Tritium data relative to the Alboran Sea show that a layer of high tritium content persists all along its path from Sardifia to Gibraltar on a density surface shallower than the intermediate water. The homogeneity of the deep tritium concentrations between 1200 m depth and the bottom corroborate the upward "pumping" and westward circulation of deep waters along the continental slope of the North African Shelf. From the data measured in the Sardinia Straits and in the Alboran Sea, and upper limit of the deep advection rate of the order of 0.5 cm s-1 is estimated.

Carbon isotopes in peat, DOC, CO2, and CH4 in a Holocene peatland on Dartmoor, southwest England

NASA Astrophysics Data System (ADS)

Charman, Dan J.; Aravena, Ramon; Bryant, Charlotte L.; Harkness, Doug D.

1999-06-01

Carbon gases with younger 14C ages than those of the surrounding peat have been reported from continental boreal peatlands, a fact which suggests that significant movement of CO2, CH4, or DOC (dissolved organic carbon) and export of C via subsurface processes are not accounted for in most estimates of contributions to the C cycle. This paper tests the hypothesis that similar processes can occur in oceanic ombrotrophic mires where water and gas movement is theoretically minimal. Measurements of 14C and δ13C in CO2, CH4, and DOC, and of tritium, are reported from depths to 250 cm at Tor Royal, a raised mire in southwest England. Radiocarbon ages of gases are 1460 to 500 yr younger than those of peat from the same depths, and CO2 is consistently younger than CH4. DOC is 1260 to 830 yr younger than the peat, and significant amounts of tritium were found at all depths. Gas ages are mostly intermediate between the age of the peat and that of the DOC, which suggests that C is principally transported as DOC. However, some gases are younger than their associated DOC, which implies that movement of dissolved gases may also take place. δ13C values in gases suggest that CO2 reduction is the major pathway for CH4 production. Transport of C in deep peats is likely to be a significant component in the overall C budget of ombrotrophic oceanic peatlands, and C export via discharge to ground or surface waters may be an important mechanism for gaseous C emissions.

Carbon isotopes in peat, DOC, CO{sub 2}, and CH{sub 4} in a Holocene peatland on Dartmoor, southwest England

DOE Office of Scientific and Technical Information (OSTI.GOV)

Charman, D.J.; Aravena, R.; Bryant, C.L.

1999-06-01

Carbon gases with younger {sup 14}C ages than those of the surrounding peat have been reported from continental boreal peatlands, a fact which suggests that significant movement of CO{sub 2}, CH{sub 4}, or DOC (dissolved organic carbon) and export of C via subsurface processes are not accounted for in most estimates of contributions to the C cycle. This paper tests the hypothesis that similar processes can occur in oceanic ombrotrophic mires where water and gas movement is theoretically minimal. Measurements of {sup 14}C and {delta}{sup 13}C in CO{sub 2}, CH{sub 4}, and DOC, and of tritium, are reported from depthsmore » to 250 cm at Tor Royal, a raised mire in southwest England. Radiocarbon ages of gases are 1,460 to 500 yr younger than those of peat from the same depths, and CO{sub 2} is consistently younger than CH{sub 4}. DOC is 1,260 to 830 yr younger than the peat, and significant amounts of tritium were found at all depths. Gas ages are mostly intermediate between the age of the peat and that of the DOC, which suggests that C is principally transported as DOC. However, some gases are younger than their associated DOC, which implies that movement of dissolved gases may also take place. {delta}{sup 13}C values in gases suggest that CO{sub 2} reduction is the major pathway for CH{sub 4} production. Transport of C in deep peats is likely to be a significant component in the overall C budget of ombrotrophic oceanic peatlands, and C export via discharge to ground or surface waters may be an important mechanism for gaseous C emissions.« less

Deep-sea environment and biodiversity of the West African Equatorial margin

NASA Astrophysics Data System (ADS)

Sibuet, Myriam; Vangriesheim, Annick

2009-12-01

The long-term BIOZAIRE multidisciplinary deep-sea environmental program on the West Equatorial African margin organized in partnership between Ifremer and TOTAL aimed at characterizing the benthic community structure in relation with physical and chemical processes in a region of oil and gas interest. The morphology of the deep Congo submarine channel and the sedimentological structures of the deep-sea fan were established during the geological ZAIANGO project and helped to select study sites ranging from 350 to 4800 m water depth inside or near the channel and away from its influence. Ifremer conducted eight deep-sea cruises on board research vessels between 2000 and 2005. Standardized methods of sampling together with new technologies such as the ROV Victor 6000 and its associated instrumentation were used to investigate this poorly known continental margin. In addition to the study of sedimentary environments more or less influenced by turbidity events, the discovery of one of the largest cold seeps near the Congo channel and deep coral reefs extends our knowledge of the different habitats of this margin. This paper presents the background, objectives and major results of the BIOZAIRE Program. It highlights the work achieved in the 16 papers in this special issue. This synthesis paper describes the knowledge acquired at a regional and local scale of the Equatorial East Atlantic margin, and tackles new interdisciplinary questions to be answered in the various domains of physics, chemistry, taxonomy and ecology to better understand the deep-sea environment in the Gulf of Guinea.

SEAS Classroom to Sea Labs: New Directions for Ridge 2000 Communitywide Education Outreach

NASA Astrophysics Data System (ADS)

Goehring, L.

2005-12-01

Lessons learned from the two year SEAS pilot program emphasize that student participation in deep-sea research is an important motivator in student learning. Further, SEAS students experience a paradigm shift in understanding evidence-based reasoning and the process of scientific discovery. At the same time, we have learned that fostering authentic student investigations within the confines of the academic year is challenging and only fits classrooms with some academic flexibility. As a result, this year, SEAS will focus on the new Classroom to Sea Lab as a means to help foster student inquiry in the secondary school science classroom. The Classroom to Sea Lab invites student participation in deep-sea research but does so without requiring students to identify and propose suitable sea-going experiments. Classroom to Sea labs are designed to feature current deep-sea research, and emphasize critical skills in laboratory techniques, data collection and analysis, and scientific reporting. Labs are conducted in the classroom (by students) and at sea (by scientists for the students), resulting in parallel datasets for comparison. Labs also feature the work of practicing scientists. An annual Classroom to Sea Report Fair invites students to summarize their findings and submit written analyses for scientist feedback and prizes, emphasizing the importance of communications skills in science. This year, the SEAS program will feature the Shallow-water vs. Deep-sea Vent Mussel Classroom to Sea lab. In this lab, students explore differences in mussel anatomy and feeding strategies, and understand how chemosynthetic symbionts function in this animal. The lab instructs students to dissect shallow-water mussels and measure the proportion of gill tissue to total body tissue. Students are also instructed to download a dataset of vent mussel measurements and compare average proportions. Finally, students are invited to submit their analyses of the lab to the on-line Report Fair sponsored by the Ridge 2000 research community. A primary goal of SEAS is to excite and engage student learners by involving them in actual research in the extreme environments of the deep-sea. The program depends on the contributions of multiple scientists within the Ridge 2000 community. Scientists field student questions during the Ask-a-Scientist email forum, serve as Report Reviewers, are featured in ``Scientist Spotlights,'' host educators during cruises to conduct at-sea portions of a lab, and help develop new labs. It is community involvement that makes the SEAS program possible and so exciting and motivating for students.

Plastic microfibre ingestion by deep-sea organisms

NASA Astrophysics Data System (ADS)

Taylor, M. L.; Gwinnett, C.; Robinson, L. F.; Woodall, L. C.

2016-09-01

Plastic waste is a distinctive indicator of the world-wide impact of anthropogenic activities. Both macro- and micro-plastics are found in the ocean, but as yet little is known about their ultimate fate and their impact on marine ecosystems. In this study we present the first evidence that microplastics are already becoming integrated into deep-water organisms. By examining organisms that live on the deep-sea floor we show that plastic microfibres are ingested and internalised by members of at least three major phyla with different feeding mechanisms. These results demonstrate that, despite its remote location, the deep sea and its fragile habitats are already being exposed to human waste to the extent that diverse organisms are ingesting microplastics.

Successive transitory distribution of Thaumarchaeota and partitioned distribution of Bathyarchaeota from the Pearl River estuary to the northern South China Sea.

PubMed

Zhou, Zhichao; Zhang, Guo-Xia; Xu, Yan-Bin; Gu, Ji-Dong

2018-06-26

Thaumarchaeota and Bathyarchaeota (formerly named Miscellaneous Crenarchaeotal Group, MCG) are globally occurring archaea playing potential roles in nitrogen and carbon cycling, especially in marine benthic biogeochemical cycle. Information on their distributional and compositional patterns could provide critical clues to further delineate their physiological and biochemical characteristics. Profiles of thaumarchaeotal and the total archaeal community in the northern South China Sea surface sediments revealed a successively transitional pattern of Thaumarchaeota composition using MiSeq sequencing. Shallow-sea sediment enriched phylotypes decreased gradually along the slope from estuarine and coastal marine region to the deep-sea, while deep-sea sediment enriched phylotypes showed a trend of increasing. Proportion of Thaumarchaeota within the total archaea increased with seawater depth. Phylotypes enriched in shallow- and deep-sea sediments were affiliated to OTUs originated from similar niches, suggesting that physiological adaption not geographical distance shaped the distribution of Thaumarchaeota lineages. Quantitative PCR also depicted a successive decrease of thaumarchaeotal 16S rRNA gene abundance from the highest at shallow-sea sites E708S and E709S (2.57 × 10 6 and 2.73 × 10 6  gene copies/g of dry sediment) to the lowest at deep-sea sites E525S and E407S (1.97 × 10 6 and 2.14 × 10 6  gene copies/g of dry sediment). Both of the abundance fractions of Bathyarchaeota subgroups (including subgroups 1, 6, 8, 10, 13, 15, 17, and ungrouped Bathyarchaeota) and the total Bathyarchaeota in the total archaea showed a negative distribution to seawater depth. Partitioned distribution of Bathyarchaeota fraction in the total archaea is documented for the first time in this study, and the shallow- and deep-sea Bathyarchaeota could account for 17.8 and 0.8%, respectively, on average. Subgroups 6 and 8, enriched subgroups in shallow-sea sediments, largely explained this partitioned distribution pattern according to seawater depth. Their prevalence in shallow-sea and suboxic estuarine sediments rather than deep-sea sediments hints that their metabolic properties of carbon metabolism are adapted to carbon substrates in these environments.

Autonomous, Retrievable, Deep Sea Microbial Fuel Cell

NASA Astrophysics Data System (ADS)

Richter, K.

2014-12-01

Microbial fuel cells (MFCs) work by providing bacteria in anaerobic sediments with an electron acceptor (anode) that stimulates metabolism of organic matter. The buried anode is connected via control circuitry to a cathode exposed to oxygen in the overlying water. During metabolism, bacteria release hydrogen ions into the sediment and transfer electrons extra-cellularly to the anode, which eventually reduce dissolved oxygen at the cathode, forming water. The open circuit voltage is approximately 0.8 v. The voltage between electrodes is operationally kept at 0.4 v with a potentiastat. The current is chiefly limited by the rate of microbial metabolism at the anode. The Office of Naval Research has encouraged development of microbial fuel cells in the marine environment at a number of academic and naval institutions. Earlier work in shallow sediments of San Diego Bay showed that the most important environmental parameters that control fuel cell power output in San Diego Bay were total organic carbon in the sediment and seasonal water temperature. Current MFC work at SPAWAR includes extension of microbial fuel cell tests to the deep sea environment (>1000 m) and, in parallel, testing microbial fuel cells in the laboratory under deep sea conditions. One question we are asking is whether MFC power output from deep water sediments repressurized and chilled in the laboratory comparable to those measured in situ. If yes, mapping the power potential of deep sea sediments may be made much easier, requiring sediment grabs and lab tests rather than deployment and retrieval of fuel cells. Another question we are asking is whether in situ temperature and total organic carbon in the deep sea sediment can predict MFC power. If yes, then we can make use of the large collection of publicly available, deep sea oceanographic measurements to make these predictions, foregoing expensive work at sea. These regressions will be compared to those derived from shallow water measurements.

Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy?

PubMed Central

2015-01-01

Nematodes inhabiting benthic deep-sea ecosystems account for >90% of the total metazoan abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is still largely unknown. Metabarcoding could facilitate the census of biodiversity, especially for those tiny metazoans for which morphological identification is difficult. We compared, for the first time, different DNA extraction procedures based on the use of two commercial kits and a previously published laboratory protocol and tested their suitability for sequencing analyses of 18S rDNA of marine nematodes. We also investigated the reliability of Roche 454 sequencing analyses for assessing the biodiversity of deep-sea nematode assemblages previously morphologically identified. Finally, intra-genomic variation in 18S rRNA gene repeats was investigated by Illumina MiSeq in different deep-sea nematode morphospecies to assess the influence of polymorphisms on nematode biodiversity estimates. Our results indicate that the two commercial kits should be preferred for the molecular analysis of biodiversity of deep-sea nematodes since they consistently provide amplifiable DNA suitable for sequencing. We report that the morphological identification of deep-sea nematodes matches the results obtained by metabarcoding analysis only at the order-family level and that a large portion of Operational Clustered Taxonomic Units (OCTUs) was not assigned. We also show that independently from the cut-off criteria and bioinformatic pipelines used, the number of OCTUs largely exceeds the number of individuals and that 18S rRNA gene of different morpho-species of nematodes displayed intra-genomic polymorphisms. Our results indicate that metabarcoding is an important tool to explore the diversity of deep-sea nematodes, but still fails in identifying most of the species due to limited number of sequences deposited in the public databases, and in providing quantitative data on the species encountered. These aspects should be carefully taken into account before using metabarcoding in quantitative ecological research and monitoring programmes of marine biodiversity. PMID:26701112

Biodiversity of the Deep-Sea Continental Margin Bordering the Gulf of Maine (NW Atlantic): Relationships among Sub-Regions and to Shelf Systems

PubMed Central

Kelly, Noreen E.; Shea, Elizabeth K.; Metaxas, Anna; Haedrich, Richard L.; Auster, Peter J.

2010-01-01

Background In contrast to the well-studied continental shelf region of the Gulf of Maine, fundamental questions regarding the diversity, distribution, and abundance of species living in deep-sea habitats along the adjacent continental margin remain unanswered. Lack of such knowledge precludes a greater understanding of the Gulf of Maine ecosystem and limits development of alternatives for conservation and management. Methodology/Principal Findings We use data from the published literature, unpublished studies, museum records and online sources, to: (1) assess the current state of knowledge of species diversity in the deep-sea habitats adjacent to the Gulf of Maine (39–43°N, 63–71°W, 150–3000 m depth); (2) compare patterns of taxonomic diversity and distribution of megafaunal and macrofaunal species among six distinct sub-regions and to the continental shelf; and (3) estimate the amount of unknown diversity in the region. Known diversity for the deep-sea region is 1,671 species; most are narrowly distributed and known to occur within only one sub-region. The number of species varies by sub-region and is directly related to sampling effort occurring within each. Fishes, corals, decapod crustaceans, molluscs, and echinoderms are relatively well known, while most other taxonomic groups are poorly known. Taxonomic diversity decreases with increasing distance from the continental shelf and with changes in benthic topography. Low similarity in faunal composition suggests the deep-sea region harbours faunal communities distinct from those of the continental shelf. Non-parametric estimators of species richness suggest a minimum of 50% of the deep-sea species inventory remains to be discovered. Conclusions/Significance The current state of knowledge of biodiversity in this deep-sea region is rudimentary. Our ability to answer questions is hampered by a lack of sufficient data for many taxonomic groups, which is constrained by sampling biases, life-history characteristics of target species, and the lack of trained taxonomists. PMID:21124960

Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy?

PubMed

Dell'Anno, Antonio; Carugati, Laura; Corinaldesi, Cinzia; Riccioni, Giulia; Danovaro, Roberto

2015-01-01

Nematodes inhabiting benthic deep-sea ecosystems account for >90% of the total metazoan abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is still largely unknown. Metabarcoding could facilitate the census of biodiversity, especially for those tiny metazoans for which morphological identification is difficult. We compared, for the first time, different DNA extraction procedures based on the use of two commercial kits and a previously published laboratory protocol and tested their suitability for sequencing analyses of 18S rDNA of marine nematodes. We also investigated the reliability of Roche 454 sequencing analyses for assessing the biodiversity of deep-sea nematode assemblages previously morphologically identified. Finally, intra-genomic variation in 18S rRNA gene repeats was investigated by Illumina MiSeq in different deep-sea nematode morphospecies to assess the influence of polymorphisms on nematode biodiversity estimates. Our results indicate that the two commercial kits should be preferred for the molecular analysis of biodiversity of deep-sea nematodes since they consistently provide amplifiable DNA suitable for sequencing. We report that the morphological identification of deep-sea nematodes matches the results obtained by metabarcoding analysis only at the order-family level and that a large portion of Operational Clustered Taxonomic Units (OCTUs) was not assigned. We also show that independently from the cut-off criteria and bioinformatic pipelines used, the number of OCTUs largely exceeds the number of individuals and that 18S rRNA gene of different morpho-species of nematodes displayed intra-genomic polymorphisms. Our results indicate that metabarcoding is an important tool to explore the diversity of deep-sea nematodes, but still fails in identifying most of the species due to limited number of sequences deposited in the public databases, and in providing quantitative data on the species encountered. These aspects should be carefully taken into account before using metabarcoding in quantitative ecological research and monitoring programmes of marine biodiversity.

Palynofacies reveal fresh terrestrial organic matter inputs in the terminal lobes of the Congo deep-sea fan

NASA Astrophysics Data System (ADS)

Schnyder, Johann; Stetten, Elsa; Baudin, François; Pruski, Audrey M.; Martinez, Philippe

2017-08-01

The Congo deep-sea fan is directly connected to the Congo River by a unique submarine canyon. The Congo River delivers up to 2×1012gPOC/yr, a part of which is funnelled by the submarine canyon and feeds the deep-sea environments. The more distal part of the Congo deep-sea fan, the terminal lobe area, has a surface of 2500 km2 and is situated up to 800 km offshore at depths of 4750-5000 m. It is a remarkable place to study the fate and distribution of the organic matter transferred from the continent to the deep ocean via turbidity currents. Forty-two samples were analyzed from the terminal lobes, including sites from the active channel, one of its levees and an abandoned distal channel. Samples were collected using multitube cores and push-cores using a Victor 6000 ROV, which surveyed the dense chemosynthetic habitats that locally characterize the terminal lobes. Palynofacies reveal a remarkably well-preserved, dominantly terrestrial particulate organic matter assemblage, that has been transferred from the continent into the deep-sea by turbidity currents. Delicate plant structures, cuticle fragments and plant cellular material is often preserved, highlighting the efficiency of turbidity currents to transfer terrestrial organic matter to the sea-floor, where it is preserved. Moreover, the palynofacies data reveal a general sorting by density or buoyancy of the organic particles, as the turbulent currents escaped the active channel, feeding the levees and the more distal, abandoned channel area. Finally, in addition to aforementioned hydrodynamic factors controlling the organic matter accumulation, a secondary influence of chemosynthetic habitats on organic matter preservation is also apparent. Palynofacies is therefore a useful tool to record the distribution of organic matter in recent and ancient deep-sea fan environments, an important topic for both academic and petroleum studies.

Explosive Deep Sea Volcanism Produces Composite Volcanoes (Stratocones) with Predominantly Diffuse Flow Hydrothermal Ecosystems

NASA Astrophysics Data System (ADS)

Rubin, K. H.; Chadwick, W. C.; Embley, R. W.; Butterfield, D. A.

2018-05-01

Newly-discovered extensive explosive deep sea volcanism produces distinct stratovolcano structures and physical rock characteristics, and host primarily diffuse flow hydrothermal activity, unlike focused flow systems at effusive submarine volcanoes.

Monitoring terrestrial dissolved organic carbon export at land-water interfaces using remote sensing

NASA Astrophysics Data System (ADS)

Yu, Q.; Li, J.; Tian, Y. Q.

2017-12-01

Carbon flux from land to oceans and lakes is a crucial component of carbon cycling. However, this lateral carbon flow at land-water interface is often neglected in the terrestrial carbon cycle budget, mainly because observations of the carbon dynamics are very limited. Monitoring CDOM/DOC dynamics using remote sensing and assessing DOC export from land to water remains a challenge. Current CDOM retrieval algorithms in the field of ocean color are not simply applicable to inland aquatic ecosystems since they were developed for coarse resolution ocean-viewing imagery and less complex water types in open-sea. We developed a new semi-analytical algorithm, called SBOP (Shallow water Bio-Optical Properties algorithm) to adapt to shallow inland waters. SBOP was first developed and calibrated based on in situ hyperspectral radiometer data. Then we applied it to the Landsat-8 OLI images and evaluated the effectiveness of the multispectral images on inversion of CDOM absorption based on our field sampling at the Saginaw Bay in the Lake Huron. The algorithm performances (RMSE = 0.17 and R2 = 0.87 in the Saginaw Bay; R2 = 0.80 in the northeastern US lakes) is promising and we conclude the CDOM absorption can be derived from Landsat-8 OLI image in both optically deep and optically shallow waters with high accuracy. Our method addressed challenges on employing appropriate atmospheric correction, determining bottom reflectance influence for shallow waters, and improving for bio-optical properties retrieval, as well as adapting to both hyperspectral and the multispectral remote sensing imagery. Over 100 Landsat-8 images in Lake Huron, northeastern US lakes, and the Arctic major rivers were processed to understand the CDOM spatio-temporal dynamics and its associated driving factors.

Fate of copper complexes in hydrothermally altered deep-sea sediments from the Central Indian Ocean Basin.

PubMed

Chakraborty, Parthasarathi; Sander, Sylvia G; Jayachandran, Saranya; Nath, B Nagender; Nagaraju, G; Chennuri, Kartheek; Vudamala, Krushna; Lathika, N; Mascarenhas-Pereira, Maria Brenda L

2014-11-01

The current study aims to understand the speciation and fate of Cu complexes in hydrothermally altered sediments from the Central Indian Ocean Basin and assess the probable impacts of deep-sea mining on speciation of Cu complexes and assess the Cu flux from this sediment to the water column in this area. This study suggests that most of the Cu was strongly associated with different binding sites in Fe-oxide phases of the hydrothermally altered sediments with stabilities higher than that of Cu-EDTA complexes. The speciation of Cu indicates that hydrothermally influenced deep-sea sediments from Central Indian Ocean Basin may not significantly contribute to the global Cu flux. However, increasing lability of Cu-sediment complexes with increasing depth of sediment may increase bioavailability and Cu flux to the global ocean during deep-sea mining. Copyright © 2014 Elsevier Ltd. All rights reserved.

Deep seawater inherent optical properties in the Southern Ionian Sea

NASA Astrophysics Data System (ADS)

Riccobene, G.; Capone, A.; Aiello, S.; Ambriola, M.; Ameli, F.; Amore, I.; Anghinolfi, M.; Anzalone, A.; Avanzini, C.; Barbarino, G.; Barbarito, E.; Battaglieri, M.; Bellotti, R.; Beverini, N.; Bonori, M.; Bouhadef, B.; Brescia, M.; Cacopardo, G.; Cafagna, F.; Caponetto, L.; Castorina, E.; Ceres, A.; Chiarusi, T.; Circella, M.; Cocimano, R.; Coniglione, R.; Cordelli, M.; Costa, M.; Cuneo, S.; D'Amico, A.; de Bonis, G.; de Marzo, C.; de Rosa, G.; de Vita, R.; Distefano, C.; Falchini, E.; Fiorello, C.; Flaminio, V.; Fratini, K.; Gabrielli, A.; Galeotti, S.; Gandolfi, E.; Grimaldi, A.; Habel, R.; Leonora, E.; Lonardo, A.; Longo, G.; Lo Presti, D.; Lucarelli, F.; Maccioni, E.; Margiotta, A.; Martini, A.; Masullo, R.; Megna, R.; Migneco, E.; Mongelli, M.; Montaruli, T.; Morganti, M.; Musumeci, M.; Nicolau, C. A.; Orlando, A.; Osipenko, M.; Osteria, G.; Papaleo, R.; Pappalardo, V.; Petta, C.; Piattelli, P.; Raffaelli, F.; Raia, G.; Randazzo, N.; Reito, S.; Ricco, G.; Ripani, M.; Rovelli, A.; Ruppi, M.; Russo, G. V.; Russo, S.; Russo, S.; Sapienza, P.; Sedita, M.; Schuller, J.-P.; Shirokov, E.; Simeone, F.; Sipala, V.; Spurio, M.; Taiuti, M.; Terreni, G.; Trasatti, L.; Urso, S.; Valente, V.; Vicini, P.

2007-02-01

The NEMO (NEutrino Mediterranean Observatory) Collaboration has been carrying out since 1998 an evaluation programme of deep sea sites suitable for the construction of the future Mediterranean km3 Čerenkov neutrino telescope. We investigated the seawater optical and oceanographic properties of several deep sea marine areas close to the Italian Coast. Inherent optical properties (light absorption and attenuation coefficients) have been measured as a function of depth using an experimental apparatus equipped with standard oceanographic probes and the commercial transmissometer AC9 manufactured by WETLabs. This paper reports on the visible light absorption and attenuation coefficients measured in deep seawater of a marine region located in the Southern Ionian Sea, 60 100 km SE of Capo Passero (Sicily). Data show that blue light absorption coefficient is about 0.015 m-1 (corresponding to an absorption length of 67 m) close to the one of optically pure water and it does not show seasonal variation.

Ecological impacts of large-scale disposal of mining waste in the deep sea

PubMed Central

Hughes, David J.; Shimmield, Tracy M.; Black, Kenneth D.; Howe, John A.

2015-01-01

Deep-Sea Tailings Placement (DSTP) from terrestrial mines is one of several large-scale industrial activities now taking place in the deep sea. The scale and persistence of its impacts on seabed biota are unknown. We sampled around the Lihir and Misima island mines in Papua New Guinea to measure the impacts of ongoing DSTP and assess the state of benthic infaunal communities after its conclusion. At Lihir, where DSTP has operated continuously since 1996, abundance of sediment infauna was substantially reduced across the sampled depth range (800–2020 m), accompanied by changes in higher-taxon community structure, in comparison with unimpacted reference stations. At Misima, where DSTP took place for 15 years, ending in 2004, effects on community composition persisted 3.5 years after its conclusion. Active tailings deposition has severe impacts on deep-sea infaunal communities and these impacts are detectable at a coarse level of taxonomic resolution. PMID:25939397

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Z.; Deng, Y.; Nostrand, J.D. Van

2011-06-15

The Deepwater Horizon oil spill in the Gulf of Mexico is the deepest and largest offshore spill in U.S. history and its impacts on marine ecosystems are largely unknown. Here, we showed that the microbial community functional composition and structure were dramatically altered in a deep-sea oil plume resulting from the spill. A variety of metabolic genes involved in both aerobic and anaerobic hydrocarbon degradation were highly enriched in the plume compared to outside the plume, indicating a great potential for intrinsic bioremediation or natural attenuation in the deep-sea. Various other microbial functional genes relevant to carbon, nitrogen, phosphorus, sulfurmore » and iron cycling, metal resistance, and bacteriophage replication were also enriched in the plume. Together, these results suggest that the indigenous marine microbial communities could play a significant role in biodegradation of oil spills in deep-sea environments.« less

Ecological impacts of large-scale disposal of mining waste in the deep sea.

PubMed

Hughes, David J; Shimmield, Tracy M; Black, Kenneth D; Howe, John A

2015-05-05

Deep-Sea Tailings Placement (DSTP) from terrestrial mines is one of several large-scale industrial activities now taking place in the deep sea. The scale and persistence of its impacts on seabed biota are unknown. We sampled around the Lihir and Misima island mines in Papua New Guinea to measure the impacts of ongoing DSTP and assess the state of benthic infaunal communities after its conclusion. At Lihir, where DSTP has operated continuously since 1996, abundance of sediment infauna was substantially reduced across the sampled depth range (800-2020 m), accompanied by changes in higher-taxon community structure, in comparison with unimpacted reference stations. At Misima, where DSTP took place for 15 years, ending in 2004, effects on community composition persisted 3.5 years after its conclusion. Active tailings deposition has severe impacts on deep-sea infaunal communities and these impacts are detectable at a coarse level of taxonomic resolution.

Species distribution models of two critically endangered deep-sea octocorals reveal fishing impacts on vulnerable marine ecosystems in central Mediterranean Sea.

PubMed

Lauria, V; Garofalo, G; Fiorentino, F; Massi, D; Milisenda, G; Piraino, S; Russo, T; Gristina, M

2017-08-14

Deep-sea coral assemblages are key components of marine ecosystems that generate habitats for fish and invertebrate communities and act as marine biodiversity hot spots. Because of their life history traits, deep-sea corals are highly vulnerable to human impacts such as fishing. They are an indicator of vulnerable marine ecosystems (VMEs), therefore their conservation is essential to preserve marine biodiversity. In the Mediterranean Sea deep-sea coral habitats are associated with commercially important crustaceans, consequently their abundance has dramatically declined due to the effects of trawling. Marine spatial planning is required to ensure that the conservation of these habitats is achieved. Species distribution models were used to investigate the distribution of two critically endangered octocorals (Funiculina quadrangularis and Isidella elongata) in the central Mediterranean as a function of environmental and fisheries variables. Results show that both species exhibit species-specific habitat preferences and spatial patterns in response to environmental variables, but the impact of trawling on their distribution differed. In particular F. quadrangularis can overlap with fishing activities, whereas I. elongata occurs exclusively where fishing is low or absent. This study represents the first attempt to identify key areas for the protection of soft and compact mud VMEs in the central Mediterranean Sea.

Microbial community composition of deep-sea corals from the Red Sea provides insight into functional adaption to a unique environment

PubMed Central

Röthig, Till; Yum, Lauren K.; Kremb, Stephan G.; Roik, Anna; Voolstra, Christian R.

2017-01-01

Microbes associated with deep-sea corals remain poorly studied. The lack of symbiotic algae suggests that associated microbes may play a fundamental role in maintaining a viable coral host via acquisition and recycling of nutrients. Here we employed 16 S rRNA gene sequencing to study bacterial communities of three deep-sea scleractinian corals from the Red Sea, Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. We found diverse, species-specific microbiomes, distinct from the surrounding seawater. Microbiomes were comprised of few abundant bacteria, which constituted the majority of sequences (up to 58% depending on the coral species). In addition, we found a high diversity of rare bacteria (taxa at <1% abundance comprised >90% of all bacteria). Interestingly, we identified anaerobic bacteria, potentially providing metabolic functions at low oxygen conditions, as well as bacteria harboring the potential to degrade crude oil components. Considering the presence of oil and gas fields in the Red Sea, these bacteria may unlock this carbon source for the coral host. In conclusion, the prevailing environmental conditions of the deep Red Sea (>20 °C, <2 mg oxygen L−1) may require distinct functional adaptations, and our data suggest that bacterial communities may contribute to coral functioning in this challenging environment. PMID:28303925

Microbial community composition of deep-sea corals from the Red Sea provides insight into functional adaption to a unique environment.

PubMed

Röthig, Till; Yum, Lauren K; Kremb, Stephan G; Roik, Anna; Voolstra, Christian R

2017-03-17

Microbes associated with deep-sea corals remain poorly studied. The lack of symbiotic algae suggests that associated microbes may play a fundamental role in maintaining a viable coral host via acquisition and recycling of nutrients. Here we employed 16 S rRNA gene sequencing to study bacterial communities of three deep-sea scleractinian corals from the Red Sea, Dendrophyllia sp., Eguchipsammia fistula, and Rhizotrochus typus. We found diverse, species-specific microbiomes, distinct from the surrounding seawater. Microbiomes were comprised of few abundant bacteria, which constituted the majority of sequences (up to 58% depending on the coral species). In addition, we found a high diversity of rare bacteria (taxa at <1% abundance comprised >90% of all bacteria). Interestingly, we identified anaerobic bacteria, potentially providing metabolic functions at low oxygen conditions, as well as bacteria harboring the potential to degrade crude oil components. Considering the presence of oil and gas fields in the Red Sea, these bacteria may unlock this carbon source for the coral host. In conclusion, the prevailing environmental conditions of the deep Red Sea (>20 °C, <2 mg oxygen L -1 ) may require distinct functional adaptations, and our data suggest that bacterial communities may contribute to coral functioning in this challenging environment.

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.

PubMed

Alcaide, María; Stogios, Peter J; Lafraya, Álvaro; Tchigvintsev, Anatoli; Flick, Robert; Bargiela, Rafael; Chernikova, Tatyana N; Reva, Oleg N; Hai, Tran; Leggewie, Christian C; Katzke, Nadine; La Cono, Violetta; Matesanz, Ruth; Jebbar, Mohamed; Jaeger, Karl-Erich; Yakimov, Michail M; Yakunin, Alexander F; Golyshin, Peter N; Golyshina, Olga V; Savchenko, Alexei; Ferrer, Manuel

2015-02-01

The present study provides a deeper view of protein functionality as a function of temperature, salt and pressure in deep-sea habitats. A set of eight different enzymes from five distinct deep-sea (3040-4908 m depth), moderately warm (14.0-16.5°C) biotopes, characterized by a wide range of salinities (39-348 practical salinity units), were investigated for this purpose. An enzyme from a 'superficial' marine hydrothermal habitat (65°C) was isolated and characterized for comparative purposes. We report here the first experimental evidence suggesting that in salt-saturated deep-sea habitats, the adaptation to high pressure is linked to high thermal resistance (P value = 0.0036). Salinity might therefore increase the temperature window for enzyme activity, and possibly microbial growth, in deep-sea habitats. As an example, Lake Medee, the largest hypersaline deep-sea anoxic lake of the Eastern Mediterranean Sea, where the water temperature is never higher than 16°C, was shown to contain halopiezophilic-like enzymes that are most active at 70°C and with denaturing temperatures of 71.4°C. The determination of the crystal structures of five proteins revealed unknown molecular mechanisms involved in protein adaptation to poly-extremes as well as distinct active site architectures and substrate preferences relative to other structurally characterized enzymes. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Carbon dynamics in a Late Quaternary-age coastal limestone aquifer system undergoing saltwater intrusion.

PubMed

Bryan, Eliza; Meredith, Karina T; Baker, Andy; Andersen, Martin S; Post, Vincent E A

2017-12-31

This study investigates the inorganic and organic aspects of the carbon cycle in groundwaters throughout the freshwater lens and transition zone of a carbonate island aquifer and identifies the transformation of carbon throughout the system. We determined 14 C and 13 C carbon isotope values for both DIC and DOC in groundwaters, and investigated the composition of DOC throughout the aquifer. In combination with hydrochemical and 3 H measurements, the chemical evolution of groundwaters was then traced from the unsaturated zone to the deeper saline zone. The data revealed three distinct water types: Fresh (F), Transition zone 1 (T1) and Transition zone 2 (T2) groundwaters. The 3 H values in F and T1 samples indicate that these groundwaters are mostly modern. 14 C DOC values are higher than 14 C DIC values and are well correlated with 3 H values. F and T1 groundwater geochemistry is dominated by carbonate mineral recrystallisation reactions that add dead carbon to the groundwater. T2 groundwaters are deeper, saline and characterised by an absence of 3 H, lower 14 C DOC values and a different DOC composition, namely a higher proportion of Humic Substances relative to total DOC. The T2 groundwaters are suggested to result from either the slow circulation of water within the seawater wedge, or from old remnant seawater caused by past sea level highstands. While further investigations are required to identify the origin of the T2 groundwaters, this study has identified their occurrence and shown that they did not evolve along the same pathway as fresh groundwaters. This study has also shown that a combined approach using 14 C and 13 C carbon isotope values for both DIC and DOC and the composition of DOC, as well as hydrochemical and 3 H measurements, can provide invaluable information regarding the transformation of carbon in a groundwater system and the evolution of fresh groundwater recharge. Copyright © 2017 Elsevier B.V. All rights reserved.

Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume.

PubMed

Li, Meng; Jain, Sunit; Baker, Brett J; Taylor, Chris; Dick, Gregory J

2014-01-01

Particulate membrane-associated hydrocarbon monooxygenases (pHMOs) are critical components of the aerobic degradation pathway for low molecular weight hydrocarbons, including the potent greenhouse gas methane. Here, we analysed pHMO gene diversity in metagenomes and metatranscriptomes of hydrocarbon-rich hydrothermal plumes in the Guaymas Basin (GB) and nearby background waters in the deep Gulf of California. Seven distinct phylogenetic groups of pHMO were present and transcriptionally active in both plume and background waters, including several that are undetectable with currently available polymerase chain reaction (PCR) primers. The seven groups of pHMOs included those related to a putative ethane oxidizing Methylococcaceae-like group, a group of the SAR324 Deltaproteobacteria, three deep-sea clades (Deep sea-1/symbiont-like, Deep sea-2/PS-80 and Deep sea-3/OPU3) within gammaproteobacterial methanotrophs, one clade related to Group Z and one unknown group. Differential abundance of pHMO gene transcripts in plume and background suggests niche differentiation between groups. Corresponding 16S rRNA genes reflected similar phylogenetic and transcriptomic abundance trends. The novelty of transcriptionally active pHMOs we recovered from a hydrocarbon-rich hydrothermal plume suggests there are significant gaps in our knowledge of the diversity and function of these enzymes in the environment. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes.

PubMed

Li, Meng; Jain, Sunit; Dick, Gregory J

2016-01-01

Microbial chemosynthesis within deep-sea hydrothermal vent plumes is a regionally important source of organic carbon to the deep ocean. Although chemolithoautotrophs within hydrothermal plumes have attracted much attention, a gap remains in understanding the fate of organic carbon produced via chemosynthesis. In the present study, we conducted shotgun metagenomic and metatranscriptomic sequencing on samples from deep-sea hydrothermal vent plumes and surrounding background seawaters at Guaymas Basin (GB) in the Gulf of California. De novo assembly of metagenomic reads and binning by tetranucleotide signatures using emergent self-organizing maps (ESOM) revealed 66 partial and nearly complete bacterial genomes. These bacterial genomes belong to 10 different phyla: Actinobacteria, Bacteroidetes, Chloroflexi, Deferribacteres, Firmicutes, Gemmatimonadetes, Nitrospirae, Planctomycetes, Proteobacteria, Verrucomicrobia. Although several major transcriptionally active bacterial groups (Methylococcaceae, Methylomicrobium, SUP05, and SAR324) displayed methanotrophic and chemolithoautotrophic metabolisms, most other bacterial groups contain genes encoding extracellular peptidases and carbohydrate metabolizing enzymes with significantly higher transcripts in the plume than in background, indicating they are involved in degrading organic carbon derived from hydrothermal chemosynthesis. Among the most abundant and active heterotrophic bacteria in deep-sea hydrothermal plumes are Planctomycetes, which accounted for seven genomes with distinct functional and transcriptional activities. The Gemmatimonadetes and Verrucomicrobia also had abundant transcripts involved in organic carbon utilization. These results extend our knowledge of heterotrophic metabolism of bacterial communities in deep-sea hydrothermal plumes.

Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes

PubMed Central

Li, Meng; Jain, Sunit; Dick, Gregory J.

2016-01-01

Microbial chemosynthesis within deep-sea hydrothermal vent plumes is a regionally important source of organic carbon to the deep ocean. Although chemolithoautotrophs within hydrothermal plumes have attracted much attention, a gap remains in understanding the fate of organic carbon produced via chemosynthesis. In the present study, we conducted shotgun metagenomic and metatranscriptomic sequencing on samples from deep-sea hydrothermal vent plumes and surrounding background seawaters at Guaymas Basin (GB) in the Gulf of California. De novo assembly of metagenomic reads and binning by tetranucleotide signatures using emergent self-organizing maps (ESOM) revealed 66 partial and nearly complete bacterial genomes. These bacterial genomes belong to 10 different phyla: Actinobacteria, Bacteroidetes, Chloroflexi, Deferribacteres, Firmicutes, Gemmatimonadetes, Nitrospirae, Planctomycetes, Proteobacteria, Verrucomicrobia. Although several major transcriptionally active bacterial groups (Methylococcaceae, Methylomicrobium, SUP05, and SAR324) displayed methanotrophic and chemolithoautotrophic metabolisms, most other bacterial groups contain genes encoding extracellular peptidases and carbohydrate metabolizing enzymes with significantly higher transcripts in the plume than in background, indicating they are involved in degrading organic carbon derived from hydrothermal chemosynthesis. Among the most abundant and active heterotrophic bacteria in deep-sea hydrothermal plumes are Planctomycetes, which accounted for seven genomes with distinct functional and transcriptional activities. The Gemmatimonadetes and Verrucomicrobia also had abundant transcripts involved in organic carbon utilization. These results extend our knowledge of heterotrophic metabolism of bacterial communities in deep-sea hydrothermal plumes. PMID:27512389

Abrupt climate change and collapse of deep-sea ecosystems

USGS Publications Warehouse

Yasuhara, Moriaki; Cronin, T. M.; Demenocal, P.B.; Okahashi, H.; Linsley, B.K.

2008-01-01

We investigated the deep-sea fossil record of benthic ostracodes during periods of rapid climate and oceanographic change over the past 20,000 years in a core from intermediate depth in the northwestern Atlantic. Results show that deep-sea benthic community "collapses" occur with faunal turnover of up to 50% during major climatically driven oceanographic changes. Species diversity as measured by the Shannon-Wiener index falls from 3 to as low as 1.6 during these events. Major disruptions in the benthic communities commenced with Heinrich Event 1, the Inter-Aller??d Cold Period (IACP: 13.1 ka), the Younger Dryas (YD: 12.9-11.5 ka), and several Holocene Bond events when changes in deep-water circulation occurred. The largest collapse is associated with the YD/IACP and is characterized by an abrupt two-step decrease in both the upper North Atlantic Deep Water assemblage and species diversity at 13.1 ka and at 12.2 ka. The ostracode fauna at this site did not fully recover until ???8 ka, with the establishment of Labrador Sea Water ventilation. Ecologically opportunistic slope species prospered during this community collapse. Other abrupt community collapses during the past 20 ka generally correspond to millennial climate events. These results indicate that deep-sea ecosystems are not immune to the effects of rapid climate changes occurring over centuries or less. ?? 2008 by The National Academy of Sciences of the USA.

NOAA Office of Exploration and Research > Public Affairs > News Room

Science.gov Websites

Atlantic seeps, deep-sea canyon diversity, off U.S. Northeast More... July 18 NOAA and Aquarium of the from the seafloor as NOAA and partners explore deep-sea volcanoes in the Lau Basin! More... August 17 through April 28, the public can watch live undersea video and listen in as ocean explorers at sea and

Lithology of the long sediment record recovered by the ICDP Dead Sea Deep Drilling Project (DSDDP)

NASA Astrophysics Data System (ADS)

Neugebauer, Ina; Brauer, Achim; Schwab, Markus J.; Waldmann, Nicolas D.; Enzel, Yehouda; Kitagawa, Hiroyuki; Torfstein, Adi; Frank, Ute; Dulski, Peter; Agnon, Amotz; Ariztegui, Daniel; Ben-Avraham, Zvi; Goldstein, Steven L.; Stein, Mordechai

2014-10-01

The sedimentary sections that were deposited from the Holocene Dead Sea and its Pleistocene precursors are excellent archives of the climatic, environmental and seismic history of the Levant region. Yet, most of the previous work has been carried out on sequences of lacustrine sediments exposed at the margins of the present-day Dead Sea, which were deposited only when the lake surface level rose above these terraces (e.g. during the Last Glacial period) and typically are discontinuous due to major lake level variations in the past. Continuous sedimentation can only be expected in the deepest part of the basin and, therefore, a deep drilling has been accomplished in the northern basin of the Dead Sea during winter of 2010-2011 within the Dead Sea Deep Drilling Project (DSDDP) in the framework of the ICDP program. Approximately 720 m of sediment cores have been retrieved from two deep and several short boreholes. The longest profile (5017-1), revealed at a water depth of ˜300 m, reaches 455 m below the lake floor (blf, i.e. to ˜1175 m below global mean sea level) and comprises approximately the last 220-240 ka. The record covers the upper part of the Amora (penultimate glacial), the Last Interglacial Samra, the Last Glacial Lisan and the Holocene Ze'elim Formations and, therewith, two entire glacial-interglacial cycles. Thereby, for the first time, consecutive sediments deposited during the MIS 6/5, 5/4 and 2/1 transitions were recovered from the Dead Sea basin, which are not represented in sediments outcropping on the present-day lake shores. In this paper, we present essential lithological data including continuous magnetic susceptibility and geochemical scanning data and the basic stratigraphy including first chronological data of the long profile (5017-1) from the deep basin. The results presented here (a) focus on the correlation of the deep basin deposits with main on-shore stratigraphic units, thus providing a unique comprehensive stratigraphic framework for regional paleoenvironmental reconstruction, and (b) highlight the outstanding potential of the Dead Sea deep sedimentary archive to record hydrological changes during interglacial, glacial and transitional intervals.

The importance of offshore origination revealed through ophiuroid phylogenomics.

PubMed

Bribiesca-Contreras, Guadalupe; Verbruggen, Heroen; Hugall, Andrew F; O'Hara, Timothy D

2017-07-12

Our knowledge of macro-evolutionary processes in the deep sea is poor, leading to much speculation about whether the deep sea is a source or sink of evolutionary adaptation. Here, we use a phylogenetic approach, on large molecular (688 species, 275 kbp) and distributional datasets (104 513 records) across an entire class of marine invertebrates (Ophiuroidea), to infer rates of bathymetric range shift over time between shallow and deep water biomes. Biome conservation is evident through the phylogeny, with the majority of species in most clades distributed within the same bathome. Despite this, bathymetric shifts have occurred. We inferred from ancestral reconstructions that eurybathic or intermediate distributions across both biomes were a transitional state and direct changes between shallow and deep sea did not occur. The macro-evolutionary pattern of bathome shift appeared to reflect micro-evolutionary processes of bathymetric speciation. Results suggest that most of the oldest clades have a deep-sea origin, but multiple colonization events indicate that the evolution of this group conforms neither to a simple onshore-offshore hypothesis, nor the opposite pattern. Both shallow and deep bathomes have played an important role in generating the current diversity of this major benthic class. © 2017 The Author(s).

Muscle enzyme activities in a deep-sea squaloid shark, Centroscyllium fabricii, compared with its shallow-living relative, Squalus acanthias.

PubMed

Treberg, Jason R; Martin, R Aidan; Driedzic, William R

2003-12-01

The activities of several enzymes of energy metabolism were measured in the heart, red muscle, and white muscle of a deep and a shallow living squaloid shark, Centroscyllium fabricii and Squalus acanthias, respectively. The phylogenetic closeness of these species, combined with their active predatory nature, similar body form, and size makes them well matched for comparison. This is the first time such a comparison has been made involving a deep-sea elasmobranch. Enzyme activities were similar in the heart, but generally lower in the red muscle of C. fabricii. Paralleling the trend seen in deep-sea teleosts, the white muscle of C. fabricii had substantially lower activities of key glycolytic enzymes, pyruvate kinase and lactate dehydrogenase, relative to S. acanthias or other shallow living elasmobranchs. Unexpectedly, between the squaloid sharks examined, creatine phosphokinase activity was higher in all tissues of the deep living C. fabricii. Low white muscle glycolytic enzyme activities in the deep-sea species coupled with high creatine phosphokinase activity suggests that the capacity for short burst swimming is likely limited once creatine phosphate supplies have been exhausted. Copyright 2003 Wiley-Liss, Inc.

Bottom-up and top-down triggers of diversification: A new look at the evolutionary ecology of scavenging amphipods in the deep sea

NASA Astrophysics Data System (ADS)

Havermans, Charlotte; Smetacek, Victor

2018-05-01

The initial, anthropocentric view of the deep ocean was that of a hostile environment inhabited by organisms rendered lethargic by constant high pressure, low temperature and sparse food supply, hence evolving slowly. This conceptual framework of a spatially and temporally homogeneous, connected, strongly bottom-up controlled habitat implied a strong constraint on, or poor incentive for, speciation. Hence, the discovery in the late 1960s of high species diversity of abyssal benthic invertebrates came as a surprise. Since then, the slow-motion view of deep-sea ecology and evolution has speeded up and diversified in the light of increasing evidence accumulating from in situ visual observations complemented by molecular and other tools. The emerging picture is that of a much livelier, highly diversified and more complex deep-sea fauna than previously assumed. In this review we examine the consequences of the incoming information for developing a broader view of evolutionary ecology in the deep sea, and for scavenging amphipods in particular. We revisit the food supply to the deep-sea floor and hypothesize that the dead bodies of animals, ranging from zooplankton to large fish are likely to be a more important source of food than their friable faeces. Camera observations of baited traps indicate that amphipod carrion-feeders arrive within hours at the bait which continues to draw new individuals for days to months later, presumably by scent trails in tidal currents. We explore the different stages of food acquisition upon which natural selection may have acted, from detection to ingestion, and discuss the possibility of a broader range of food acquisition strategies, including predation and specializations. Although currently neglected in deep-sea ecology, top-down factors are likely to play a more important role in the evolution of deep-sea organisms. Predation on amphipods at baits by bathyal and abyssal fishes, and large predatory crustaceans in the hadal zone, is often observed. Finally, we develop hypotheses regarding the effects of past, present and imminent anthropogenic activities on scavenger biomass and how these can be tested with the most modern tools.

Sedimentary and Paleoceanographic Responses to the South China Sea Basin Evolution

NASA Astrophysics Data System (ADS)

Jian, Z.; Liu, Z.; Jin, H.; Larsen, H. C.; Alvarez Zarikian, C. A.; Stock, J. M.; Sun, Z.; Klaus, A.

2017-12-01

As the largest marginal sea of the western Pacific, the South China Sea (SCS) has experienced a complete Wilson cycle, which had inevitably exerted a profound impact on the sedimentary environment and ocean circulation. Based on the results of four ODP/IODP expeditions to the SCS since 1999, together with other research data in this region, this study aims to explore the sedimentary and paleoceanographic responses to the tectonic events and basin evolution in the SCS. The early history of the SCS from land to deep sea was revealed by foraminiferal fauna: (1) The SCS evolved from continental shelf to an upper bathyal environment around the Oligocene/Eocene boundary, and significantly deepened at the turn of Oligocene/Miocene; (2) The early Oligocene SCS was deep but its shelf was narrow, evidenced by the Para-Tethys type deep-sea agglutinated benthic foraminifers and abundant transported shallow-water species at ODP Site 1148. Along with the SCS basin formation and the development of this semi-closed basin, the deep-sea benthic foraminiferal δ13C decreased when the Antarctic ice sheet began to reestablish at 14 Ma, the Indonesian Seaway and the southern SCS deep-water channel were closed at 10 Ma, the Luzon arc collided with Taiwan at 6.5 Ma, and the Bashi Strait was restricted at 1.2 Ma. Nd isotopes of shark teeth at ODP Site 1148 also support these inferences. An early to middle Miocene succession of red clay was found at all sites deeper than 3500 m water depth, which may be correlated to a basin-wide event related to deep circulation of oxygenated water from the western Pacific. After the earliest late Miocene carbonate crash, the red clay disappeared while the large carbonate platforms were drowned and remarkably shrank in the SCS. Late Miocene sediments display a succession of hemi-pelagic and turbidite deposits, indicating that the deep basin entered its modern state below the CCD. Frequent turbidites ended when Pliocene growth of deep-sea manganese-nodules reoccurred in the SCS. The data show that the SCS can serve as a natural laboratory to study the relationship between paleoceanographic changes and tectonic events.

Ecosystem function and services provided by the deep sea

NASA Astrophysics Data System (ADS)

Thurber, A. R.; Sweetman, A. K.; Narayanaswamy, B. E.; Jones, D. O. B.; Ingels, J.; Hansman, R. L.

2014-07-01

The deep sea is often viewed as a vast, dark, remote, and inhospitable environment, yet the deep ocean and seafloor are crucial to our lives through the services that they provide. Our understanding of how the deep sea functions remains limited, but when treated synoptically, a diversity of supporting, provisioning, regulating and cultural services becomes apparent. The biological pump transports carbon from the atmosphere into deep-ocean water masses that are separated over prolonged periods, reducing the impact of anthropogenic carbon release. Microbial oxidation of methane keeps another potent greenhouse gas out of the atmosphere while trapping carbon in authigenic carbonates. Nutrient regeneration by all faunal size classes provides the elements necessary for fueling surface productivity and fisheries, and microbial processes detoxify a diversity of compounds. Each of these processes occur on a very small scale, yet considering the vast area over which they occur they become important for the global functioning of the ocean. The deep sea also provides a wealth of resources, including fish stocks, enormous bioprospecting potential, and elements and energy reserves that are currently being extracted and will be increasingly important in the near future. Society benefits from the intrigue and mystery, the strange life forms, and the great unknown that has acted as a muse for inspiration and imagination since near the beginning of civilization. While many functions occur on the scale of microns to meters and timescales up to years, the derived services that result are only useful after centuries of integrated activity. This vast dark habitat, which covers the majority of the globe, harbors processes that directly impact humans in a variety of ways; however, the same traits that differentiate it from terrestrial or shallow marine systems also result in a greater need for integrated spatial and temporal understanding as it experiences increased use by society. In this manuscript we aim to provide a foundation for informed conservation and management of the deep sea by summarizing the important role of the deep sea in society.

Structure, functioning, and cumulative stressors of Mediterranean deep-sea ecosystems

NASA Astrophysics Data System (ADS)

Tecchio, Samuele; Coll, Marta; Sardà, Francisco

2015-06-01

Environmental stressors, such as climate fluctuations, and anthropogenic stressors, such as fishing, are of major concern for the management of deep-sea ecosystems. Deep-water habitats are limited by primary productivity and are mainly dependent on the vertical input of organic matter from the surface. Global change over the latest decades is imparting variations in primary productivity levels across oceans, and thus it has an impact on the amount of organic matter landing on the deep seafloor. In addition, anthropogenic impacts are now reaching the deep ocean. The Mediterranean Sea, the largest enclosed basin on the planet, is not an exception. However, ecosystem-level studies of response to varying food input and anthropogenic stressors on deep-sea ecosystems are still scant. We present here a comparative ecological network analysis of three food webs of the deep Mediterranean Sea, with contrasting trophic structure. After modelling the flows of these food webs with the Ecopath with Ecosim approach, we compared indicators of network structure and functioning. We then developed temporal dynamic simulations varying the organic matter input to evaluate its potential effect. Results show that, following the west-to-east gradient in the Mediterranean Sea of marine snow input, organic matter recycling increases, net production decreases to negative values and trophic organisation is overall reduced. The levels of food-web activity followed the gradient of organic matter availability at the seafloor, confirming that deep-water ecosystems directly depend on marine snow and are therefore influenced by variations of energy input, such as climate-driven changes. In addition, simulations of varying marine snow arrival at the seafloor, combined with the hypothesis of a possible fishery expansion on the lower continental slope in the western basin, evidence that the trawling fishery may pose an impact which could be an order of magnitude stronger than a climate-driven reduction of marine snow.

Seasonality and flux estimates of dissolved organic carbon in tidal wetlands and estuaries in the U.S. Mid- Atlantic Bight and Gulf of Mexico from ocean color

NASA Astrophysics Data System (ADS)

Cao, F.; Tzortziou, M.; Hu, C.; Najjar, R.

2016-02-01

Tidal wetlands and estuaries are dynamic features of coastal ocean and play critical roles in the global carbon cycle. Exchanges of dissolved organic carbon (DOC) between tidal wetlands and adjacent estuaries have important implications for carbon sequestration in tidal wetlands as well as biogeochemical cycling of wetlands derived material in the coastal zones. Recent studies demonstrated that the absorption coefficients of chromophoric dissolved organic matter at λ= 275 and 295 nm, which can be derived from satellite ocean color observations, can be used to accurately retrieve dissolved organic carbon (DOC) in some coastal waters. Based on a synthesis of existing field observations collected covering wide spatial and temporal variability in the Mid-Atlantic Bight and the Gulf of Mexico, here we developed and validated new empirical models to estimate coastal DOC from remotely sensed bio-optical properties of the surface water. We focused on the interfaces between tidal wetland-estuary and estuary-shelf water domains. The DOC algorithms were applied to SeaWiFs and MODIS observations to generate long-term climatological DOC distributions from 1998 to 2014. Empirical orthogonal function analysis revealed strong seasonality and spatial gradients in the satellite retrieved DOC in the tidal wetlands and estuaries. Combined with field observations and biogeochemical models, satellite retrievals can be used to scale up carbon fluxes from individual marshes and sub-estuaries to the whole estuarine system, and improve understanding of biogeochemical exchanges between terrestrial and aquatic ecosystems.

Examining organic carbon transport by the Orinoco River using SeaWiFS imagery

NASA Astrophysics Data System (ADS)

López, Ramón; Del Castillo, Carlos E.; Miller, Richard L.; Salisbury, Joseph; Wisser, Dominik

2012-09-01

The Orinoco River is the fourth largest in the world in terms of water discharge and organic carbon export to the ocean. River export of organic carbon is a key component of the carbon cycle and the global carbon budget. Here, we examined the seasonal transport of organic carbon by the Orinoco River into the eastern Caribbean using the conservative relationship of colored dissolved organic matter (CDOM) and dissolved organic carbon (DOC) in low salinity coastal waters influenced by river plumes. In situ measurements of CDOM absorption, DOC, and salinity were used to develop an empirical model for DOC concentration at the Orinoco River Plume. Satellite remote sensing reflectances were used with empirical models to determine DOC and Particulate organic carbon (POC) river transport. Our estimates of CDOM and DOC significantly correlated with in situ measurements and were within the expected ranges for the river. Total organic carbon transport by the Orinoco River during the period of 1998 to 2010 was 7.10 ×1012 g C y-1, from 5.29 × 1012 g C y-1 of DOC and 1.81 × 1012 g C y-1 of POC, representing ˜6% increase to previous published estimates. The variability in organic carbon transport responded to the seasonality in river flow more than to changes in organic carbon concentration in the river. Our results corroborate that is possible to estimate organic carbon transport using ocean color data at global scales. This is needed to reduce the uncertainties of land-ocean carbon fluxes.

Larval transport modeling of deep-sea invertebrates can aid the search for undiscovered populations.

PubMed

Yearsley, Jon M; Sigwart, Julia D

2011-01-01

Many deep-sea benthic animals occur in patchy distributions separated by thousands of kilometres, yet because deep-sea habitats are remote, little is known about their larval dispersal. Our novel method simulates dispersal by combining data from the Argo array of autonomous oceanographic probes, deep-sea ecological surveys, and comparative invertebrate physiology. The predicted particle tracks allow quantitative, testable predictions about the dispersal of benthic invertebrate larvae in the south-west Pacific. In a test case presented here, using non-feeding, non-swimming (lecithotrophic trochophore) larvae of polyplacophoran molluscs (chitons), we show that the likely dispersal pathways in a single generation are significantly shorter than the distances between the three known population centres in our study region. The large-scale density of chiton populations throughout our study region is potentially much greater than present survey data suggest, with intermediate 'stepping stone' populations yet to be discovered. We present a new method that is broadly applicable to studies of the dispersal of deep-sea organisms. This test case demonstrates the power and potential applications of our new method, in generating quantitative, testable hypotheses at multiple levels to solve the mismatch between observed and expected distributions: probabilistic predictions of locations of intermediate populations, potential alternative dispersal mechanisms, and expected population genetic structure. The global Argo data have never previously been used to address benthic biology, and our method can be applied to any non-swimming larvae of the deep-sea, giving information upon dispersal corridors and population densities in habitats that remain intrinsically difficult to assess.

Comparison of hospitalization among German coastal and deep sea fishermen.

PubMed

Oldenburg, M; Harth, V; Manuwald, U

2015-08-01

This study aims to compare the hospitalization of German fishermen employed on German-flagged fishing vessels with that of the general German population in consideration of differences between coastal and deep sea fishery. By means of a database from the health insurance company for seafarers, diagnoses of German fishermen treated in German hospitals were determined from January 1997 to December 2007. Compared with the general German population, the fishermen's risk for specific diseases leading to hospitalization was calculated as standardized hospitalization ratio (SHR). Compared with the German reference population, German fishermen showed a considerably high SHR for malignant neoplasms at all sites (SHR 1.46; 95% CI 1.37-1.56), for respiratory cancer, and for non-Hodgkin lymphoma (NHL). Furthermore, they had more often been hospitalized due to diabetes mellitus, diseases of the respiratory and digestive systems as well as due to injury and poisoning. The risk for respiratory cancer and NHL among coastal fishermen exceeded that of deep sea fishermen, whereas the latter displayed a considerably higher SHR for diabetes mellitus, diseases of the respiratory system and metabolic and nutritional disorders. In contrast, the SHR for hypertensive and ischemic heart diseases was decreased among deep sea fishermen. Less qualified deep sea fishermen displayed a considerably higher SHR for malignant neoplasms at all sites than more highly qualified ones. Fishery is still an occupation which poses a high risk for malignant neoplasms and injuries. This is likely due to lifestyle and work-related factors. Further studies are needed to evaluate the different working and living conditions of coastal and deep sea fishermen.

Star-shaped feeding traces produced by echiuran worms on the deep-sea floor of the Bay of Bengal

NASA Astrophysics Data System (ADS)

Ohta, Suguru

1984-12-01

Many star-shaped foraging traces were observed in bottom photographs of the deep-sea floor taken in the Bay of Bengal between the depths of 5025 and 2635 m. They were classified into 10 types according to their dimensions, aspect ratios (length/width) of their spokes, features of the central structure, and possible production mechanisms. The proboscis of a deep-sea bonellid echiuran worm was photographed at a depth of 2635 m in the act of producing one of the star-shaped foraging traces. On the basis of photographic observations and observations of shallow-water forms, several types of the feeding traces can be ascribed to the foraging of deep-sea echiuran worms on surface detritus. At least four types of the star-shaped trace are probably produced by deep-sea bonellid worms, and a linear correlation could be found between the aspect ratios of the spokes and maximum number of spokes around the central hole. A geometrical model experiment stimulating the feeding behavior of a bonellid worm suggested simple behavioral principles which afford maximum utilization of the surface area around a central hole with least expenditure of energy. The prediction of the maximum number of spokes for a given aspect of spokes by the model experiment agreed well with those observed, both utilizing about 76% of the fresh sediment surface within the span of the probiscis around a central hole. This efficient feeding pattern may have adaptive value in deep-sea environments such as the central part of the Bay of Bengal, where energy input is limited.

Larval Transport Modeling of Deep-Sea Invertebrates Can Aid the Search for Undiscovered Populations

PubMed Central

Yearsley, Jon M.; Sigwart, Julia D.

2011-01-01

Background Many deep-sea benthic animals occur in patchy distributions separated by thousands of kilometres, yet because deep-sea habitats are remote, little is known about their larval dispersal. Our novel method simulates dispersal by combining data from the Argo array of autonomous oceanographic probes, deep-sea ecological surveys, and comparative invertebrate physiology. The predicted particle tracks allow quantitative, testable predictions about the dispersal of benthic invertebrate larvae in the south-west Pacific. Principal Findings In a test case presented here, using non-feeding, non-swimming (lecithotrophic trochophore) larvae of polyplacophoran molluscs (chitons), we show that the likely dispersal pathways in a single generation are significantly shorter than the distances between the three known population centres in our study region. The large-scale density of chiton populations throughout our study region is potentially much greater than present survey data suggest, with intermediate ‘stepping stone’ populations yet to be discovered. Conclusions/Significance We present a new method that is broadly applicable to studies of the dispersal of deep-sea organisms. This test case demonstrates the power and potential applications of our new method, in generating quantitative, testable hypotheses at multiple levels to solve the mismatch between observed and expected distributions: probabilistic predictions of locations of intermediate populations, potential alternative dispersal mechanisms, and expected population genetic structure. The global Argo data have never previously been used to address benthic biology, and our method can be applied to any non-swimming larvae of the deep-sea, giving information upon dispersal corridors and population densities in habitats that remain intrinsically difficult to assess. PMID:21857992

Advances in Taxonomy, Ecology, and Biogeography of Dirivultidae (Copepoda) Associated with Chemosynthetic Environments in the Deep Sea

PubMed Central

Gollner, Sabine; Ivanenko, Viatcheslav N.; Arbizu, Pedro Martínez; Bright, Monika

2010-01-01

Background Copepoda is one of the most prominent higher taxa with almost 80 described species at deep-sea hydrothermal vents. The unique copepod family Dirivultidae with currently 50 described species is the most species rich invertebrate family at hydrothermal vents. Methodology/Principal Findings We reviewed the literature of Dirivultidae and provide a complete key to species, and map geographical and habitat specific distribution. In addition we discuss the ecology and origin of this family. Conclusions/Significance Dirivultidae are only present at deep-sea hydrothermal vents and along the axial summit trough of midocean ridges, with the exception of Dirivultus dentaneus found associated with Lamellibrachia species at 1125 m depth off southern California. To our current knowledge Dirivultidae are unknown from shallow-water vents, seeps, whale falls, and wood falls. They are a prominent part of all communities at vents and in certain habitat types (like sulfide chimneys colonized by pompei worms) they are the most abundant animals. They are free-living on hard substrate, mostly found in aggregations of various foundation species (e.g. alvinellids, vestimentiferans, and bivalves). Most dirivultid species colonize more than one habitat type. Dirivultids have a world-wide distribution, but most genera and species are endemic to a single biogeographic region. Their origin is unclear yet, but immigration from other deep-sea chemosynthetic habitats (stepping stone hypothesis) or from the deep-sea sediments seems unlikely, since Dirivultidae are unknown from these environments. Dirivultidae is the most species rich family and thus can be considered the most successful taxon at deep-sea vents. PMID:20838422

Fungal diversity in deep-sea sediments of a hydrothermal vent system in the Southwest Indian Ridge

NASA Astrophysics Data System (ADS)

Xu, Wei; Gong, Lin-feng; Pang, Ka-Lai; Luo, Zhu-Hua

2018-01-01

Deep-sea hydrothermal sediment is known to support remarkably diverse microbial consortia. In deep sea environments, fungal communities remain less studied despite their known taxonomic and functional diversity. High-throughput sequencing methods have augmented our capacity to assess eukaryotic diversity and their functions in microbial ecology. Here we provide the first description of the fungal community diversity found in deep sea sediments collected at the Southwest Indian Ridge (SWIR) using culture-dependent and high-throughput sequencing approaches. A total of 138 fungal isolates were cultured from seven different sediment samples using various nutrient media, and these isolates were identified to 14 fungal taxa, including 11 Ascomycota taxa (7 genera) and 3 Basidiomycota taxa (2 genera) based on internal transcribed spacers (ITS1, ITS2 and 5.8S) of rDNA. Using illumina HiSeq sequencing, a total of 757,467 fungal ITS2 tags were recovered from the samples and clustered into 723 operational taxonomic units (OTUs) belonging to 79 taxa (Ascomycota and Basidiomycota contributed to 99% of all samples) based on 97% sequence similarity. Results from both approaches suggest that there is a high fungal diversity in the deep-sea sediments collected in the SWIR and fungal communities were shown to be slightly different by location, although all were collected from adjacent sites at the SWIR. This study provides baseline data of the fungal diversity and biogeography, and a glimpse to the microbial ecology associated with the deep-sea sediments of the hydrothermal vent system of the Southwest Indian Ridge.

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

PubMed Central

Bik, Holly M.; Sung, Way; De Ley, Paul; Baldwin, James G.; Sharma, Jyotsna; Rocha-Olivares, Axayácatl; Thomas, W. Kelley

2011-01-01

Summary Microbial eukaryotes (nematodes, protists, fungi, etc., loosely referred to as meiofauna) are ubiquitous in marine sediments and likely play pivotal roles in maintaining ecosystem function. Although the deep-sea benthos represents one of the world’s largest habitats, we lack a firm understanding of the biodiversity and community interactions amongst meiobenthic organisms in this ecosystem. Within this vast environment key questions concerning the historical genetic structure of species remain a mystery, yet have profound implications for our understanding of global biodiversity and how we perceive and mitigate the impact of environmental change and anthropogenic disturbance. Using a metagenetic approach, we present an assessment of microbial eukaryote communities across depth (shallow water to abyssal) and ocean basins (deep-sea Pacific and Atlantic). Within the 12 sites examined, our results suggest that some taxa can maintain eurybathic ranges and cosmopolitan deep-sea distributions, but the majority of species appear to be regionally restricted. For OCTUs reporting wide distributions, there appears to be a taxonomic bias towards a small subset of taxa in most phyla; such bias may be driven by specific life history traits amongst these organisms. In addition, low genetic divergence between geographically disparate deep-sea sites suggests either a shorter coalescence time between deep-sea regions or slower rates of evolution across this vast oceanic ecosystem. While high-throughput studies allow for broad assessment of genetic patterns across microbial eukaryote communities, intragenomic variation in rRNA gene copies and the patchy coverage of reference databases currently present substantial challenges for robust taxonomic interpretations of eukaryotic datasets. PMID:21985648

C-IMAGE Teachers at Sea Maiden Voyages: Promoting Authentic Scientific Research in the Classroom

NASA Astrophysics Data System (ADS)

Hine, A. C.; Greely, T.; Lodge, A.

2012-12-01

The Center for Integrated Modeling & Analysis of Gulf Ecosystems (C-IMAGE) is one of eight consortia participating in the BP/Gulf of Mexico Research Initiative. C-IMAGE is a comprehensive research consortium of 13 national and international universities tasked with evaluating the environmental impacts of the 2010 Deepwater Horizon Oil Spill (DWH) on coastal ecosystems, the water column and the sea floor. The associated C-IMAGE research cruises provide a unique opportunity for Florida's K12 science educators to participate in the data collection and collaboration process alongside marine scientists as a member of the scientific crew. The mission of the C-IMAGE cruises is to help to answer several fundamental questions about the DWH event and subsequent impacts on the plankton population, reef and fish communities and the microbial communities. Deep sea sediment samples, plankton and fishes collected during these expeditions are the data sources. Sampling activities include the use of the SIPPER plankton sampler, multi-core sediment system and long line surveys to assess fish health. While at sea teachers participate in the at sea research and serve as the ship to shore communicator via social media (FB, Twitter, daily blogs) and LIVE video conferencing with formal and informal classrooms. Marine scientists, post-docs and graduate students participating in the C-IMAGE cruises collaborate with the teacher on board to communicate the science, technology and life at sea experiences to educational and general audiences. Upon return to shore, teachers will translate their At Sea learning experience to understandable inquiry-based lessons about the science and technology encompassing the northern Gulf of Mexico ecology, the DWH event and subsequent impacts. Lessons developed from the cruises will inform a future series of C-IMAGE Teacher Professional Developments during Phase 2 of Outreach activities. The results from three Gulf of Mexico expeditions (Aug-Nov) will be presented: related to teachers' working knowledge of research and sampling procedures as well as metrics for the potential value-added of social media as a mechanism for communicating research with formal and informal audiences. C-IMAGE teachers will engage in research with experts in biological and chemical modeling, marine resource assessment, sedimentary geochemistry and toxicology. This research is made possible by a grant from BP/The Gulf of Mexico Research Initiative. Contract #SA 12-10/GoMRI-007;

Carbon isotopic evidence for microbial control of carbon supply to Orca Basin at the seawater-brine interface

NASA Astrophysics Data System (ADS)

Shah, S. R.; Joye, S. B.; Brandes, J. A.; McNichol, A. P.

2013-05-01

Orca Basin, an intraslope basin on the Texas-Louisiana continental slope, hosts a hypersaline, anoxic brine in its lowermost 200 m in which limited microbial activity has been reported. This brine contains a large reservoir of reduced and aged carbon, and appears to be stable at decadal time scales: concentrations and isotopic composition of dissolved inorganic (DIC) and organic carbon (DOC) are similar to measurements made in the 1970s. Both DIC and DOC are more "aged" within the brine pool than in overlying water, and the isotopic contrast between brine carbon and seawater carbon is much greater for DIC than DOC. While the stable carbon isotopic composition of brine DIC points towards a combination of methane and organic carbon remineralization as its source, radiocarbon and box model results point to the brine interface as the major source region for DIC, allowing for only limited oxidation of methane diffusing upwards from sediments. This conclusion is consistent with previous studies that identify the seawater-brine interface as the focus of microbial activity associated with Orca Basin brine. Isotopic similarities between DIC and DOC suggest a different relationship between these two carbon reservoirs than is typically observed in deep ocean basins. Radiocarbon values implicate the seawater-brine interface region as the likely source region for DOC to the brine as well as DIC.

Reactivity and mobilization of permafrost-derived organic matter along the Lena River Delta - Laptev Sea transition

NASA Astrophysics Data System (ADS)

Koch, Boris P.; Dubinenkov, Ivan; Flerus, Ruth; Schmitt-Kopplin, Philippe; Kattner, Gerhard

2015-04-01

The impact of global warming on organic carbon budgets in permafrost systems are not well constrained. Changes in organic carbon fluxes caused by permafrost thaw depend on microbial activity, coastal erosion, mobilization of organic matter by increased porewater fluxes, and the inherent chemical stability of organic matter in permafrost soils. Here we aim at the identification and molecular characterization of active and inactive dissolved organic matter (DOM) components within the river-ocean transition. We studied four transects in the coastal Laptev Sea characterized by steep physico-chemical gradients. Molecular information on solid-phase extracted DOM was derived from ultrahigh resolution mass spectrometry. Changes of the chemical composition with salinity were used as a measure for DOM reactivity. Although changes of dissolved organic carbon (DOC) in the estuary suggested conservative mixing, only 27% of the identified molecular formulas behaved conservatively, 32% were moderately affected, and 41% were actively involved in estuarine processes. The molecular complexity in the DOM samples increased with growing marine influence and the average elemental composition (i.e. relative contribution of organic nitrogen and oxygen compounds) changed significantly with increasing salinity. These chemical changes were consistent with the results of a 20-day microbial incubation experiment, during which more than half of the permafrost-derived DOC was mineralized. We conclude that, although the DOC gradient in the estuary suggests conservative behavior, terrestrial DOM is substantially affected by estuarine processes which in turn also impact organic carbon budgets in the Lena Delta.

Soil Fauna Affects Dissolved Carbon and Nitrogen in Foliar Litter in Alpine Forest and Alpine Meadow

PubMed Central

Liao, Shu; Yang, Wanqin; Tan, Yu; Peng, Yan; Li, Jun; Tan, Bo; Wu, Fuzhong

2015-01-01

Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) are generally considered important active biogeochemical pools of total carbon and nitrogen. Many studies have documented the contributions of soil fauna to litter decomposition, but the effects of the soil fauna on labile substances (i.e., DOC and TDN) in litter during early decomposition are not completely clear. Therefore, a field litterbag experiment was carried out from 13th November 2013 to 23rd October 2014 in an alpine forest and an alpine meadow located on the eastern Tibetan Plateau. Litterbags with different mesh sizes were used to provide access to or prohibit the access of the soil fauna, and the concentrations of DOC and TDN in the foliar litter were measured during the winter (the onset of freezing, deep freezing and thawing stage) and the growing season (early and late). After one year of field incubation, the concentration of DOC in the litter significantly decreased, whereas the TDN concentration in the litter increased. Similar dynamic patterns were detected under the effects of the soil fauna on both DOC and TDN in the litter between the alpine forest and the alpine meadow. The soil fauna showed greater positive effects on decreasing DOC concentration in the litter in the winter than in the growing season. In contrast, the dynamics of TND in the litter were related to seasonal changes in environmental factors, rather than the soil fauna. In addition, the soil fauna promoted a decrease in litter DOC/TDN ratio in both the alpine forest and the alpine meadow throughout the first year of decomposition, except for in the late growing season. These results suggest that the soil fauna can promote decreases in DOC and TDN concentrations in litter, contributing to early litter decomposition in these cold biomes. PMID:26406249

Soil Fauna Affects Dissolved Carbon and Nitrogen in Foliar Litter in Alpine Forest and Alpine Meadow.

PubMed

Liao, Shu; Yang, Wanqin; Tan, Yu; Peng, Yan; Li, Jun; Tan, Bo; Wu, Fuzhong

2015-01-01

Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) are generally considered important active biogeochemical pools of total carbon and nitrogen. Many studies have documented the contributions of soil fauna to litter decomposition, but the effects of the soil fauna on labile substances (i.e., DOC and TDN) in litter during early decomposition are not completely clear. Therefore, a field litterbag experiment was carried out from 13th November 2013 to 23rd October 2014 in an alpine forest and an alpine meadow located on the eastern Tibetan Plateau. Litterbags with different mesh sizes were used to provide access to or prohibit the access of the soil fauna, and the concentrations of DOC and TDN in the foliar litter were measured during the winter (the onset of freezing, deep freezing and thawing stage) and the growing season (early and late). After one year of field incubation, the concentration of DOC in the litter significantly decreased, whereas the TDN concentration in the litter increased. Similar dynamic patterns were detected under the effects of the soil fauna on both DOC and TDN in the litter between the alpine forest and the alpine meadow. The soil fauna showed greater positive effects on decreasing DOC concentration in the litter in the winter than in the growing season. In contrast, the dynamics of TND in the litter were related to seasonal changes in environmental factors, rather than the soil fauna. In addition, the soil fauna promoted a decrease in litter DOC/TDN ratio in both the alpine forest and the alpine meadow throughout the first year of decomposition, except for in the late growing season. These results suggest that the soil fauna can promote decreases in DOC and TDN concentrations in litter, contributing to early litter decomposition in these cold biomes.

Regional distribution of the high-altitude clouds over the Indian subcontinent and surrounding oceanic regions based on seven years of satellite observations

NASA Astrophysics Data System (ADS)

Meenu, S.; Rajeev, K.; Parameswaran, K.; Suresh Raju, C.

2006-12-01

Quantitative estimates of the spatio-temporal variations in deep convective events over the Indian subcontinent, Arabian Sea, Bay of Bengal, and tropical Indian Ocean are carried out using the data obtained from Advanced Very High Resolution Radiometer (AVHRR) onboard NOAA-14 and NOAA-16 during the period 1996-2003. Pixels having thermal IR brightness temperature (BT) less than 245K are considered as high altitude clouds and those having BT<220 K are considered as very high altitude clouds. Very deep convective clouds are observed over north Bay of Bengal during the Asian summer monsoon season when the mean cloud top temperature reaches as low as 190K. Over the Head Bay of Bengal (HBoB) from June to September, more than 50% of the observed clouds are deep convective type and more than half of these deep convective clouds are very deep convective clouds. Histogram analysis of the cloud top temperatures during this period shows that over HBoB the most prominent cloud top temperature of the deep convective clouds is ~205K over the HBoB while that over southeast Arabian Sea (SEAS) is ~220K. This indicates that most probably the cloud top altitude over HBoB is ~2 km larger than that over SEAS during the Asian summer monsoon period. Another remarkable feature observed during the Asian summer monsoon period is the significantly low values of deep convective clouds observed over the south Bay of Bengal close to Srilanka, which appears as a large pool of reduced cloud amount surrounded by regions of large-scale deep convection. Over both SEAS and HBoB, the total, deep convective and very deep convective cloud amounts as well as their corresponding cloud top temperatures (or the altitude of the cloud top) undergo large seasonal variations, while such variations are less prominent over the eastern equatorial Indian Ocean.

GEOPHYSICS, ASTRONOMY AND ASTROPHYSICS: A two scale nonlinear fractal sea surface model in a one dimensional deep sea

NASA Astrophysics Data System (ADS)

Xie, Tao; Zou, Guang-Hui; William, Perrie; Kuang, Hai-Lan; Chen, Wei

2010-05-01

Using the theory of nonlinear interactions between long and short waves, a nonlinear fractal sea surface model is presented for a one dimensional deep sea. Numerical simulation results show that spectra intensity changes at different locations (in both the wave number domain and temporal-frequency domain), and the system obeys the energy conservation principle. Finally, a method to limit the fractal parameters is also presented to ensure that the model system does not become ill-posed.

Morphology, taxonomic status and distribution of the opisthobranch mollusc Coryphella (s.l.) japonica from the central deep water basin of the Sea of Japan

NASA Astrophysics Data System (ADS)

Martynov, Alexander V.

2013-02-01

The opisthobranch fauna (Gastropoda: Opisthobranchia) of the deep sea basins of the Sea of Japan is reviewed. A detailed description of the most common deep sea nudibranch species Coryphella japonicaVolodchenko, 1941 is given based on materials from various expeditions (including R/V "Vityaz" cruises and SoJaBio project). Distinct morphological features of C. japonica are discussed and its valid taxonomic status is confirmed. The considerable radular variability of C. japonica for the first time is documented using a scanning electron microscope. Unique features of the bathymetric distribution of C. japonica ranging from shelf to the abyssal depths are discussed in connection with the "pseudabyssal area" concept. C. japonica was compared to its assumed synonym C. salmonacea, and to similar C. athadona. Material from all these species, including types of C. japonica, was examined externally, anatomically via dissection, and SEM. C. salmonacea is restricted to North Atlantic and Arctic only, whereas C. japonica inhabits NE Pacific including deep water basins of the Sea of Japan.

Starvation and recovery in the deep-sea methanotroph Methyloprofundus sedimenti.

PubMed

Tavormina, Patricia L; Kellermann, Matthias Y; Antony, Chakkiath Paul; Tocheva, Elitza I; Dalleska, Nathan F; Jensen, Ashley J; Valentine, David L; Hinrichs, Kai-Uwe; Jensen, Grant J; Dubilier, Nicole; Orphan, Victoria J

2017-01-01

In the deep ocean, the conversion of methane into derived carbon and energy drives the establishment of diverse faunal communities. Yet specific biological mechanisms underlying the introduction of methane-derived carbon into the food web remain poorly described, due to a lack of cultured representative deep-sea methanotrophic prokaryotes. Here, the response of the deep-sea aerobic methanotroph Methyloprofundus sedimenti to methane starvation and recovery was characterized. By combining lipid analysis, RNA analysis, and electron cryotomography, it was shown that M. sedimenti undergoes discrete cellular shifts in response to methane starvation, including changes in headgroup-specific fatty acid saturation levels, and reductions in cytoplasmic storage granules. Methane starvation is associated with a significant increase in the abundance of gene transcripts pertinent to methane oxidation. Methane reintroduction to starved cells stimulates a rapid, transient extracellular accumulation of methanol, revealing a way in which methane-derived carbon may be routed to community members. This study provides new understanding of methanotrophic responses to methane starvation and recovery, and lays the initial groundwork to develop Methyloprofundus as a model chemosynthesizing bacterium from the deep sea. © 2016 John Wiley & Sons Ltd.

Deep oceans may acidify faster than anticipated due to global warming

NASA Astrophysics Data System (ADS)

Chen, Chen-Tung Arthur; Lui, Hon-Kit; Hsieh, Chia-Han; Yanagi, Tetsuo; Kosugi, Naohiro; Ishii, Masao; Gong, Gwo-Ching

2017-12-01

Oceans worldwide are undergoing acidification due to the penetration of anthropogenic CO2 from the atmosphere1-4. The rate of acidification generally diminishes with increasing depth. Yet, slowing down of the thermohaline circulation due to global warming could reduce the pH in the deep oceans, as more organic material would decompose with a longer residence time. To elucidate this process, a time-series study at a climatically sensitive region with sufficient duration and resolution is needed. Here we show that deep waters in the Sea of Japan are undergoing reduced ventilation, reducing the pH of seawater. As a result, the acidification rate near the bottom of the Sea of Japan is 27% higher than the rate at the surface, which is the same as that predicted assuming an air-sea CO2 equilibrium. This reduced ventilation may be due to global warming and, as an oceanic microcosm with its own deep- and bottom-water formations, the Sea of Japan provides an insight into how future warming might alter the deep-ocean acidification.

Gulf of Mexico Deep-Sea Coral Ecosystem Studies, 2008-2011

USGS Publications Warehouse

Kellogg, Christina A.

2009-01-01

Most people are familiar with tropical coral reefs, located in warm, well-illuminated, shallow waters. However, corals also exist hundreds and even thousands of meters below the ocean surface, where it is cold and completely dark. These deep-sea corals, also known as cold-water corals, have become a topic of interest due to conservation concerns over the impacts of trawling, exploration for oil and gas, and climate change. Although the existence of these corals has been known since the 1800s, our understanding of their distribution, ecology, and biology is limited due to the technical difficulties of conducting deep-sea research. DISCOVRE (DIversity, Systematics, and COnnectivity of Vulnerable Reef Ecosystems) is a new U.S. Geological Survey (USGS) program focused on deep-water coral ecosystems in the Gulf of Mexico. This integrated, multidisciplinary, international effort investigates a variety of topics related to unique and fragile deep-sea coral ecosystems from the microscopic level to the ecosystem level, including components of microbiology, population genetics, paleoecology, food webs, taxonomy, community ecology, physical oceanography, and mapping.

Plastic microfibre ingestion by deep-sea organisms

PubMed Central

Taylor, M. L.; Gwinnett, C.; Robinson, L. F.; Woodall, L. C.

2016-01-01

Plastic waste is a distinctive indicator of the world-wide impact of anthropogenic activities. Both macro- and micro-plastics are found in the ocean, but as yet little is known about their ultimate fate and their impact on marine ecosystems. In this study we present the first evidence that microplastics are already becoming integrated into deep-water organisms. By examining organisms that live on the deep-sea floor we show that plastic microfibres are ingested and internalised by members of at least three major phyla with different feeding mechanisms. These results demonstrate that, despite its remote location, the deep sea and its fragile habitats are already being exposed to human waste to the extent that diverse organisms are ingesting microplastics. PMID:27687574

DOE Office of Scientific and Technical Information (OSTI.GOV)

James P. Barry; Peter G. Brewer

OAK-B135 This report summarizes activities and results of investigations of the potential environmental consequences of direct injection of carbon dioxide into the deep-sea as a carbon sequestration method. Results of field experiments using small scale in situ releases of liquid CO2 are described in detail. The major conclusions of these experiments are that mortality rates of deep sea biota will vary depending on the concentrations of CO2 in deep ocean waters that result from a carbon sequestration project. Large changes in seawater acidity and carbon dioxide content near CO2 release sites will likely cause significant harm to deep-sea marine life.more » Smaller changes in seawater chemistry at greater distances from release sites will be less harmful, but may result in significant ecosystem changes.« less

Call to protect deep-sea coral, sponge ecosystems

NASA Astrophysics Data System (ADS)

Showstack, Randy

2004-03-01

More than 1100 scientists are signatories to a 15 February consensus statement calling for the protection of deep sea coral and sponge ecosystems. The statement indicates that ``the greatest human threat'' to these ecosystems ``is commercial fishing, especially bottom trawling.''

A Deep-Sea Simulation.

ERIC Educational Resources Information Center

Montes, Georgia E.

1997-01-01

Describes an activity that simulates exploration techniques used in deep-sea explorations and teaches students how this technology can be used to take a closer look inside volcanoes, inspect hazardous waste sites such as nuclear reactors, and explore other environments dangerous to humans. (DDR)

Species abundance, sexual encounter and bioluminescent signalling in the deep sea.

PubMed Central

Herring, P J

2000-01-01

The problems faced by deep-sea animals in achieving sexual and other encounters require sensory and effector systems the synergy of which can span the often very substantial distances that separate individuals. Bioluminescent systems provide one of the links between individuals, and the sexual dimorphism of some photophores suggests that they are employed to attract a mate. However, nearest-neighbour values for many deep-sea animals put them beyond the effective range of bioluminescent signals and it is therefore likely that these signals are employed at intermediate ranges, once an initial contact (perhaps olfactory) has been made. PMID:11079413

New insights into the environmental photochemistry of 5-chloro-2-(2,4-dichlorophenoxy)phenol (triclosan): reconsidering the importance of indirect photoreactions.

PubMed

Bianco, Angelica; Fabbri, Debora; Minella, Marco; Brigante, Marcello; Mailhot, Gilles; Maurino, Valter; Minero, Claudio; Vione, Davide

2015-04-01

Triclosan (5-chloro-2-(2,4-dichlorophenoxy)phenol) is a widely used antimicrobial agent that undergoes fairly slow biodegradation. It is often found in surface waters in both the acidic (HTric) and basic (Tric(-)) forms (pKa ∼8), and it can undergo direct photodegradation to produce several intermediates including a dioxin congener (2,8-dichlorodibenzodioxin, hereafter 28DCDD). The latter is formed from Tric(-) and causes non-negligible environmental concern. Differently from current literature reports, in this paper we show that the direct photolysis would not be the only important transformation pathway of triclosan in surface waters. This is particularly true for HTric, which could undergo very significant reactions with (•)OH and, if the laser-derived quenching rate constants of this work are comparable to the actual reaction rate constants, with the triplet states of chromophoric dissolved organic matter ((3)CDOM*). Model calculations suggest that reaction with (3)CDOM* could be the main HTric phototransformation pathway in deep waters with high dissolved organic carbon (DOC), while reaction with (•)OH could prevail in low-DOC waters. In the case of Tric(-) the direct photolysis is much more important than for HTric, but triplet-sensitised transformation could produce 28DCDD + 27DCDD with higher yield compared to the direct photolysis, and it could play some role as dioxin source in deep waters with elevated DOC. Copyright © 2014 Elsevier Ltd. All rights reserved.

Oxygen uptake and vertical transport during deep convection events

NASA Astrophysics Data System (ADS)

Sun, D.; Ito, T.; Bracco, A.

2016-02-01

Dissolved oxygen (O2) is essential for the chemistry and living organisms of the oceans. O2 is consumed in the interior ocean due to the respiration of organic matter, and must be replenished by physical ventilation with the O2-rich surface waters. The O2 supply to the deep waters happens only through the subduction and deep convection during cold seasons at high latitude oceans. The Labrador Sea is one of the few regions where deep ventilation occurs. According to observational and modeling studies, the intensity, duration and timing of deep convection events have varied significantly on the interannual and decadal timescales. In this study we develop a theoretical framework to understand the air-sea transfer of O2 during open-ocean deep convection events. The theory is tested against a suite of numerical integrations using MITgcm in non-hydrostatic configuration including the parameterization of diffusive and bubble mediated gas transfer. Forced with realistic air-sea buoyancy fluxes, the model can reproduce the evolution of temperature, salinity and dissolved O2 observed by ARGO floats in the Labrador Sea. Idealized sensitivity experiments are performed changing the intensity and duration of the buoyancy forcing as well as the wind speed for the gas exchange parameterizations. The downward transport of O2 results from the combination of vertical homogenization of existing O2 and the uptake from the air-sea flux. The intensity of the buoyancy forcing controls the vertical extent of convective mixing which brings O2 to the deep ocean. Integrated O2 uptake increases with the duration of convection even when the total buoyancy loss is held constant. The air-sea fluxes are highly sensitive to the wind speed especially for the bubble injection flux, which is a major addition to the diffusive flux under strong winds. However, the bubble injection flux can be partially compensated by the diffusive outgassing in response to the elevated saturation state. Under strong buoyancy forcing, this compensation is suppressed by the entrainment of relatively O2-poor deep waters. These results imply and allow to quantify the direct link between variability of deep convection and the supply of O2 in the North Atlantic.

Characterization of bacterial diversity associated with deep sea ferromanganese nodules from the South China Sea.

PubMed

Zhang, De-Chao; Liu, Yan-Xia; Li, Xin-Zheng

2015-09-01

Deep sea ferromanganese (FeMn) nodules contain metallic mineral resources and have great economic potential. In this study, a combination of culture-dependent and culture-independent (16S rRNA genes clone library and pyrosequencing) methods was used to investigate the bacterial diversity in FeMn nodules from Jiaolong Seamount, the South China Sea. Eleven bacterial strains including some moderate thermophiles were isolated. The majority of strains belonged to the phylum Proteobacteria; one isolate belonged to the phylum Firmicutes. A total of 259 near full-length bacterial 16S rRNA gene sequences in a clone library and 67,079 valid reads obtained using pyrosequencing indicated that members of the Gammaproteobacteria dominated, with the most abundant bacterial genera being Pseudomonas and Alteromonas. Sequence analysis indicated the presence of many organisms whose closest relatives are known manganese oxidizers, iron reducers, hydrogen-oxidizing bacteria and methylotrophs. This is the first reported investigation of bacterial diversity associated with deep sea FeMn nodules from the South China Sea.

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

PubMed Central

2010-01-01

Background Bathymodiolus azoricus is a deep-sea hydrothermal vent mussel found in association with large faunal communities living in chemosynthetic environments at the bottom of the sea floor near the Azores Islands. Investigation of the exceptional physiological reactions that vent mussels have adopted in their habitat, including responses to environmental microbes, remains a difficult challenge for deep-sea biologists. In an attempt to reveal genes potentially involved in the deep-sea mussel innate immunity we carried out a high-throughput sequence analysis of freshly collected B. azoricus transcriptome using gills tissues as the primary source of immune transcripts given its strategic role in filtering the surrounding waterborne potentially infectious microorganisms. Additionally, a substantial EST data set was produced and from which a comprehensive collection of genes coding for putative proteins was organized in a dedicated database, "DeepSeaVent" the first deep-sea vent animal transcriptome database based on the 454 pyrosequencing technology. Results A normalized cDNA library from gills tissue was sequenced in a full 454 GS-FLX run, producing 778,996 sequencing reads. Assembly of the high quality reads resulted in 75,407 contigs of which 3,071 were singletons. A total of 39,425 transcripts were conceptually translated into amino-sequences of which 22,023 matched known proteins in the NCBI non-redundant protein database, 15,839 revealed conserved protein domains through InterPro functional classification and 9,584 were assigned with Gene Ontology terms. Queries conducted within the database enabled the identification of genes putatively involved in immune and inflammatory reactions which had not been previously evidenced in the vent mussel. Their physical counterpart was confirmed by semi-quantitative quantitative Reverse-Transcription-Polymerase Chain Reactions (RT-PCR) and their RNA transcription level by quantitative PCR (qPCR) experiments. Conclusions We have established the first tissue transcriptional analysis of a deep-sea hydrothermal vent animal and generated a searchable catalog of genes that provides a direct method of identifying and retrieving vast numbers of novel coding sequences which can be applied in gene expression profiling experiments from a non-conventional model organism. This provides the most comprehensive sequence resource for identifying novel genes currently available for a deep-sea vent organism, in particular, genes putatively involved in immune and inflammatory reactions in vent mussels. The characterization of the B. azoricus transcriptome will facilitate research into biological processes underlying physiological adaptations to hydrothermal vent environments and will provide a basis for expanding our understanding of genes putatively involved in adaptations processes during post-capture long term acclimatization experiments, at "sea-level" conditions, using B. azoricus as a model organism. PMID:20937131

Comparison of Deep-Water Viromes from the Atlantic Ocean and the Mediterranean Sea

PubMed Central

Winter, Christian; Garcia, Juan A. L.; Weinbauer, Markus G.; DuBow, Michael S.; Herndl, Gerhard J.

2014-01-01

The aim of this study was to compare the composition of two deep-sea viral communities obtained from the Romanche Fracture Zone in the Atlantic Ocean (collected at 5200 m depth) and the southwest Mediterranean Sea (from 2400 m depth) using a pyro-sequencing approach. The results are based on 18.7% and 6.9% of the sequences obtained from the Atlantic Ocean and the Mediterranean Sea, respectively, with hits to genomes in the non-redundant viral RefSeq database. The identifiable richness and relative abundance in both viromes were dominated by archaeal and bacterial viruses accounting for 92.3% of the relative abundance in the Atlantic Ocean and for 83.6% in the Mediterranean Sea. Despite characteristic differences in hydrographic features between the sampling sites in the Atlantic Ocean and the Mediterranean Sea, 440 virus genomes were found in both viromes. An additional 431 virus genomes were identified in the Atlantic Ocean and 75 virus genomes were only found in the Mediterranean Sea. The results indicate that the rather contrasting deep-sea environments of the Atlantic Ocean and the Mediterranean Sea share a common core set of virus types constituting the majority of both virus communities in terms of relative abundance (Atlantic Ocean: 81.4%; Mediterranean Sea: 88.7%). PMID:24959907

Assessing the potential impacts of declining Arctic sea ice cover on the photochemical degradation of dissolved organic matter in the Chukchi and Beaufort Seas

NASA Astrophysics Data System (ADS)

Logvinova, Christie L.; Frey, Karen E.; Mann, Paul J.; Stubbins, Aron; Spencer, Robert G. M.

2015-11-01

A warming and shifting climate in the Arctic has led to significant declines in sea ice over the last several decades. Although these changes in sea ice cover are well documented, large uncertainties remain in how associated increases in solar radiation transmitted to the underlying ocean water column will impact heating, biological, and biogeochemical processes in the Arctic Ocean. In this study, six under-ice marine, two ice-free marine, and two ice-free terrestrially influenced water samples were irradiated using a solar simulator for 72 h (representing ~10 days of ambient sunlight) to investigate dissolved organic matter (DOM) dynamics from the Chukchi and Beaufort Seas. Solar irradiation caused chromophoric DOM (CDOM) light absorption at 254 nm to decrease by 48 to 63%. An overall loss in total DOM fluorescence intensity was also observed at the end of all experiments, and each of six components identified by parallel factor (PARAFAC) analysis was shown to be photoreactive in at least one experiment. Fluorescent DOM (FDOM) also indicated that the majority of DOM in under-ice and ice-free marine waters was likely algal-derived. Measurable changes in dissolved organic carbon (DOC) were only observed for sites influenced by riverine runoff. Losses of CDOM absorbance at shorter wavelengths suggest that the beneficial UV protection currently received by marine organisms may decline with the increased light transmittance associated with sea ice melt ponding and overall reductions of sea ice. Our FDOM analyses demonstrate that DOM irrespective of source was susceptible to photobleaching. Additionally, our findings suggest that photodegradation of CDOM in under-ice waters is not currently a significant source of carbon dioxide (CO2) (i.e., we did not observe systematic DOC loss). However, increases in primary production and terrestrial freshwater export expected under future climate change scenarios may cause an increase in CDOM quantity and shift in quality throughout Arctic Ocean surface waters. As Arctic temperatures continue to warm and summer sea ice further declines, examination of the resulting enhanced photodegradation processes and their impacts on the interplay between primary production, carbon cycling, and surface ocean heating processes will be paramount.

Enzymatic activities and prokaryotic abundance in relation to organic matter along a West-East Mediterranean transect (TRANSMED cruise).

PubMed

Zaccone, R; Boldrin, A; Caruso, G; La Ferla, R; Maimone, G; Santinelli, C; Turchetto, M

2012-07-01

The distribution of extracellular enzymatic activities (EEA) [leucine aminopeptidase (LAP), ß-glucosidase (GLU), alkaline phosphatase (AP)], as well as that of prokaryotic abundance (PA) and biomass (PB), dissolved organic carbon (DOC), particulate organic carbon and particulate total nitrogen (POC, PTN), was determined in the epi-, meso-, and bathypelagic waters of the Mediterranean Sea along a West-East transect and at one Atlantic station located outside the Strait of Gibraltar. This study represents a synoptical evaluation of the microbial metabolism during early summer. Decreasing trends with depth were observed for most of the parameters (PA, PB, AP, DOC, POC, PTN). Significant differences between the western and eastern basins of the Mediterranean Sea were found, displaying higher rates of LAP and GLU and lower C/N ratios more in the eastern than in the western areas. Conversely, in the epipelagic layer, PA and PB were found to be higher in the western than in the eastern basins. PB was significantly related to DOC concentration (all data, n = 145, r = 0.53, P < 0.01), while significant correlations of EEA with POC and PTN were found in the epipelagic layer, indicating an active response of microbial metabolism to organic substrates. Specific enzyme activities normalized to cell abundance pointed out high values of LAP and GLU in the bathypelagic layer, especially in the eastern basin, while cell-specific AP was high in the epi- and bathypelagic zone of the eastern basin indicating a rapid regeneration of inorganic P for both prokaryotes and phytoplankton needs. Low activity and abundance characterized the Atlantic station, while opposite trends of these parameters were observed along the Mediterranean transect, showing the uncoupling between abundance and activity data. In the east Mediterranean Sea, decomposition processes increased probably in response to mesoscale structures which lead to organic matter downwelling.

Gyre-scale deep convection in the subpolar North Atlantic Ocean during winter 2014-2015

NASA Astrophysics Data System (ADS)

Piron, A.; Thierry, V.; Mercier, H.; Caniaux, G.

2017-02-01

Using Argo floats, we show that a major deep convective activity occurred simultaneously in the Labrador Sea (LAB), south of Cape Farewell (SCF), and the Irminger Sea (IRM) during winter 2014-2015. Convection was driven by exceptional heat loss to the atmosphere (up to 50% higher than the climatological mean). This is the first observation of deep convection over such a widespread area. Mixed layer depths exceptionally reached 1700 m in SCF and 1400 m in IRM. The deep thermocline density gradient limited the mixed layer deepening in the Labrador Sea to 1800 m. Potential densities of deep waters were similar in the three basins (27.73-27.74 kg m-3) but warmer by 0.3°C and saltier by 0.04 in IRM than in LAB and SCF, meaning that each basin formed locally its own deep water. The cold anomaly that developed recently in the North Atlantic Ocean favored and was enhanced by this exceptional convection.

Sensitivity of the deep-sea amphipod Eurythenes gryllus to chemically dispersed oil.

PubMed

Olsen, Gro Harlaug; Coquillé, Nathalie; Le Floch, Stephane; Geraudie, Perrine; Dussauze, Matthieu; Lemaire, Philippe; Camus, Lionel

2016-04-01

In the context of an oil spill accident and the following oil spill response, much attention is given to the use of dispersants. Dispersants are used to disperse an oil slick from the sea surface into the water column generating a cloud of dispersed oil droplets. The main consequence is an increasing of the sea water-oil interface which induces an increase of the oil biodegradation. Hence, the use of dispersants can be effective in preventing oiling of sensitive coastal environments. Also, in case of an oil blowout from the seabed, subsea injection of dispersants may offer some benefits compared to containment and recovery of the oil or in situ burning operation at the sea surface. However, biological effects of dispersed oil are poorly understood for deep-sea species. Most effects studies on dispersed oil and also other oil-related compounds have been focusing on more shallow water species. This is the first approach to assess the sensitivity of a macro-benthic deep-sea organism to dispersed oil. This paper describes a toxicity test which was performed on the macro-benthic deep-sea amphipod (Eurythenes gryllus) to determine the concentration causing lethality to 50% of test individuals (LC50) after an exposure to dispersed Brut Arabian Light (BAL) oil. The LC50 (24 h) was 101 and 24 mg L(-1) after 72 h and 12 mg L(-1) at 96 h. Based on EPA scale of toxicity categories to aquatic organisms, an LC50 (96 h) of 12 mg L(-1) indicates that the dispersed oil was slightly to moderately toxic to E. gryllus. As an attempt to compare our results to others, a literature study was performed. Due to limited amount of data available for dispersed oil and amphipods, information on other crustacean species and other oil-related compounds was also collected. Only one study on dispersed oil and amphipods was found, the LC50 value in this study was similar to the LC50 value of E. gryllus in our study. Since toxicity data are important input to risk assessment and net environmental benefit analyses, and since such data are generally lacking on deep-sea species, the data set produced in this study is of interest to the industry, stakeholders, environmental management, and ecotoxicologists. However, studies including more deep-sea species covering different functional groups are needed to evaluate the sensitivity of the deep-sea compartments to dispersed oil relative to other environmental compartments.

Examining the effect of altered redox conditions on deep soil organic matter stability

NASA Astrophysics Data System (ADS)

Gabriel, C.; Kellman, L. M.; Ziegler, S. E.

2013-12-01

Since subsoil horizons contribute significantly to terrestrial carbon (C) budgets, understanding the influence of disturbances such as forest harvesting on subsoil C stability is critical. Clearcut harvesting leads to changes in the soil physico-chemical environment, including altering redox conditions arising from changes in soil hydrology that increase soil saturation, soil temperature, and pH. These physico-chemical changes have the potential to alter the adsorption of soil organic matter (SOM) to minerals, particularly at depth where SOM is primarily associated with mineral phases. The objective of this study was to determine the effect of differing redox states (aerobic vs. anaerobic) and temperature upon SOM stability of forested soils representative of the Acadian Forest Region of Eastern North America. Composite soil samples through depth (0-10, 10-20, 20-35, and 35-50 cm) from a mature red spruce forest (110 years) were incubated under optimum (aerobic) or saturated (anaerobic) conditions for 1 or 4 months at two temperatures (5 and 15 C). Following incubation, soil leachate was analyzed for dissolved organic carbon (DOC), and UV-vis absorbance in order to determine soil C losses and its optical character. Specific UV-vis absorbance SUVA (254 nm) and spectral slope ratios were calculated in order to assess the composition of chromophoric dissolved organic matter (CDOM). Preliminary results from the 1 month incubation indicate that under anaerobic conditions, all depths released DOC with a higher SUVA than under aerobic conditions, with the largest change observed in the 0-10 cm depth increment. Soil incubated at 5 C produced leachate with significantly less DOC and with a lower absorbance compared to 15 C under both redox conditions. These results suggest that both temperature and redox state are important in determining the aromaticity of DOC released from soils. Spectral slope ratios revealed that a greater proportion of CDOM of lower molecular weight (MW) compounds were released from deep mineral podzolic soils when saturated (high SUVA, low spectral slope), while higher MW CDOM were released from shallow soil strata (low SUVA, high spectral slope). This is consistent with research that indicates plant-derived SOM and microbial products each dominate in shallow and deep mineral soils, respectively. These preliminary results suggest that alterations to the redox state of a forested podzolic soil may have the potential to alter the mobilization of SOM, its composition and associated soil carbon stores.

Keeping Research Data from the Continental Deep Drilling Programme (KTB) Accessible and Taking First Steps Towards Digital Preservation

NASA Astrophysics Data System (ADS)

Klump, J. F.; Ulbricht, D.; Conze, R.

2014-12-01

The Continental Deep Drilling Programme (KTB) was a scientific drilling project from 1987 to 1995 near Windischeschenbach, Bavaria. The main super-deep borehole reached a depth of 9,101 meters into the Earth's continental crust. The project used the most current equipment for data capture and processing. After the end of the project key data were disseminated through the web portal of the International Continental Scientific Drilling Program (ICDP). The scientific reports were published as printed volumes. As similar projects have also experienced, it becomes increasingly difficult to maintain a data portal over a long time. Changes in software and underlying hardware make a migration of the entire system inevitable. Around 2009 the data presented on the ICDP web portal were migrated to the Scientific Drilling Database (SDDB) and published through DataCite using Digital Object Identifiers (DOI) as persistent identifiers. The SDDB portal used a relational database with a complex data model to store data and metadata. A PHP-based Content Management System with custom modifications made it possible to navigate and browse datasets using the metadata and then download datasets. The data repository software eSciDoc allows storing self-contained packages consistent with the OAIS reference model. Each package consists of binary data files and XML-metadata. Using a REST-API the packages can be stored in the eSciDoc repository and can be searched using the XML-metadata. During the last maintenance cycle of the SDDB the data and metadata were migrated into the eSciDoc repository. Discovery metadata was generated following the GCMD-DIF, ISO19115 and DataCite schemas. The eSciDoc repository allows to store an arbitrary number of XML-metadata records with each data object. In addition to descriptive metadata each data object may contain pointers to related materials, such as IGSN-metadata to link datasets to physical specimens, or identifiers of literature interpreting the data. Datasets are presented by XSLT-stylesheet transformation using the stored metadata. The presentation shows several migration cycles of data and metadata, which were driven by aging software systems. Currently the datasets reside as self-contained entities in a repository system that is ready for digital preservation.

77 FR 71590 - Lock+TM

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-03

..., 50-foot-deep frame module fitted with a trash rack and containing 10 low-head bulb turbines each... electronically via the Internet. See 18 CFR 385.2001(a)(1)(iii) and the instructions on the Commission's Web site... Commission's Web site at http://www.ferc.gov/docs-filing/elibrary.asp . Enter the docket number (P-13500-002...

The distribution of deep-sea sponge aggregations in the North Atlantic and implications for their effective spatial management

NASA Astrophysics Data System (ADS)

Howell, Kerry-Louise; Piechaud, Nils; Downie, Anna-Leena; Kenny, Andrew

2016-09-01

Sponge aggregations have been recognised as key component of shallow benthic ecosystems providing several important functional roles including habitat building and nutrient recycling. Within the deep-sea ecosystem, sponge aggregations may be extensive and available evidence suggests they may also play important functional roles, however data on their ecology, extent and distribution in the North Atlantic is lacking, hampering conservation efforts. In this study, we used Maximum Entropy Modelling and presence data for two deep-sea sponge aggregation types, Pheronema carpenteri aggregations and ostur aggregations dominated by geodid sponges, to address the following questions: 1) What environmental factors drive the broad-scale distribution of these selected sponge grounds? 2) What is the predicted distribution of these grounds in the northern North Atlantic, Norwegian and Barents Sea? 3) How are these sponge grounds distributed between Exclusive Economic Zones (EEZs) and High Seas areas? 4) What percentage of these grounds in High Seas areas are protected by the current High Seas MPA network? Our results suggest that silicate concentration, temperature, depth and amount of particulate organic carbon are the most important drivers of sponge distribution. Most of the sponge grounds are located within national EEZs rather than in the High Seas. Coordinated conservation planning between nations with significant areas of sponge grounds such as Iceland, Greenland and Faroes (Denmark), Norway (coastal Norway and Svalbard), Portugal and the UK, should be implemented in order to effectively manage these communities in view of the increasing level of human activity within the deep-sea environment.

Temporal change in deep-sea benthic ecosystems: a review of the evidence from recent time-series studies.

PubMed

Glover, A G; Gooday, A J; Bailey, D M; Billett, D S M; Chevaldonné, P; Colaço, A; Copley, J; Cuvelier, D; Desbruyères, D; Kalogeropoulou, V; Klages, M; Lampadariou, N; Lejeusne, C; Mestre, N C; Paterson, G L J; Perez, T; Ruhl, H; Sarrazin, J; Soltwedel, T; Soto, E H; Thatje, S; Tselepides, A; Van Gaever, S; Vanreusel, A

2010-01-01

Societal concerns over the potential impacts of recent global change have prompted renewed interest in the long-term ecological monitoring of large ecosystems. The deep sea is the largest ecosystem on the planet, the least accessible, and perhaps the least understood. Nevertheless, deep-sea data collected over the last few decades are now being synthesised with a view to both measuring global change and predicting the future impacts of further rises in atmospheric carbon dioxide concentrations. For many years, it was assumed by many that the deep sea is a stable habitat, buffered from short-term changes in the atmosphere or upper ocean. However, recent studies suggest that deep-seafloor ecosystems may respond relatively quickly to seasonal, inter-annual and decadal-scale shifts in upper-ocean variables. In this review, we assess the evidence for these long-term (i.e. inter-annual to decadal-scale) changes both in biologically driven, sedimented, deep-sea ecosystems (e.g. abyssal plains) and in chemosynthetic ecosystems that are partially geologically driven, such as hydrothermal vents and cold seeps. We have identified 11 deep-sea sedimented ecosystems for which published analyses of long-term biological data exist. At three of these, we have found evidence for a progressive trend that could be potentially linked to recent climate change, although the evidence is not conclusive. At the other sites, we have concluded that the changes were either not significant, or were stochastically variable without being clearly linked to climate change or climate variability indices. For chemosynthetic ecosystems, we have identified 14 sites for which there are some published long-term data. Data for temporal changes at chemosynthetic ecosystems are scarce, with few sites being subjected to repeated visits. However, the limited evidence from hydrothermal vents suggests that at fast-spreading centres such as the East Pacific Rise, vent communities are impacted on decadal scales by stochastic events such as volcanic eruptions, with associated fauna showing complex patterns of community succession. For the slow-spreading centres such as the Mid-Atlantic Ridge, vent sites appear to be stable over the time periods measured, with no discernable long-term trend. At cold seeps, inferences based on spatial studies in the Gulf of Mexico, and data on organism longevity, suggest that these sites are stable over many hundreds of years. However, at the Haakon Mosby mud volcano, a large, well-studied seep in the Barents Sea, periodic mud slides associated with gas and fluid venting may disrupt benthic communities, leading to successional sequences over time. For chemosynthetic ecosystems of biogenic origin (e.g. whale-falls), it is likely that the longevity of the habitat depends mainly on the size of the carcass and the ecological setting, with large remains persisting as a distinct seafloor habitat for up to 100 years. Studies of shallow-water analogs of deep-sea ecosystems such as marine caves may also yield insights into temporal processes. Although it is obvious from the geological record that past climate change has impacted deep-sea faunas, the evidence that recent climate change or climate variability has altered deep-sea benthic communities is extremely limited. This mainly reflects the lack of remote sensing of this vast seafloor habitat. Current and future advances in deep-ocean benthic science involve new remote observing technologies that combine a high temporal resolution (e.g. cabled observatories) with spatial capabilities (e.g. autonomous vehicles undertaking image surveys of the seabed). Copyright © 2010 Elsevier Ltd. All rights reserved.

Syllidae (Annelida: Phyllodocida) from the deep Mediterranean Sea, with the description of three new species.

PubMed

Langeneck, Joachim; Musco, Luigi; Busoni, Giulio; Conese, Ilaria; Aliani, Stefano; Castelli, Alberto

2018-01-03

Despite almost two centuries of research, the diversity of Mediterranean deep-sea environments remain still largely unexplored. This is particularly true for the polychaete family Syllidae. We report herein 14 species; among them, we describe Erinaceusyllis barbarae n. sp., Exogone sophiae n. sp. and Prosphaerosyllis danovaroi n. sp. and report Parexogone wolfi San Martín, 1991, Exogone lopezi San Martín, Ceberio Aguirrezabalaga, 1996 and Anguillosyllis Day, 1963 for the first time from the Western Mediterranean, the latter based on a single individual likely belonging to an undescribed species. Moreover, we re-establish Syllis profunda Cognetti, 1955 based on type and new material. Present data, along with a critical analysis of available literature, show that Syllidae are highly diverse in deep Mediterranean environments, even though they are rarely reported, probably due to the scarce number of studies devoted to the size-fraction of benthos including deep-sea syllids. Most deep-sea Syllidae have wide distributions, which do not include shallow-waters. 100 m depth apparently represents the boundary between the assemblages dominated by generalist shallow water syllids like Exogone naidina Ørsted, 1843 and Syllis parapari San Martín López, 2000, and those deep-water assemblages characterised by strictly deep-water species like Parexogone campoyi San Martín, Ceberio Aguirrezabalaga, 1996, Parexogone wolfi San Martín, 1991 and Syllis sp. 1 (= Langerhansia caeca Katzmann, 1973).

Bathymetric patterns of body size: implications for deep-sea biodiversity

NASA Astrophysics Data System (ADS)

Rex, Michael A.; Etter, Ron J.

1998-01-01

The evolution of body size is a problem of fundamental interest, and one that has an important bearing on community structure and conservation of biodiversity. The most obvious and pervasive characteristic of the deep-sea benthos is the small size of most species. The numerous attempts to document and explain geographic patterns of body size in the deep-sea benthos have focused on variation among species or whole faunal components, and have led to conflicting and contradictory results. It is important to recognize that studying size as an adaptation to the deep-sea environment should include analyses within species using measures of size that are standardized to common growth stages. An analysis within eight species of deep-sea benthic gastropods presented here reveals a clear trend for size to increase with depth in both larval and adult shells. An ANCOVA with multiple comparison tests showed that, in general, size-depth relationships for both adult and larval shells are more pronounced in the bathyal region than in the abyss. This result reinforces the notion that steepness of the bathymetric selective gradient decreases with depth, and that the bathyal region is an evolutionary hotspot that promotes diversification. Bathymetric size clines in gastropods support neither the predictions of optimality models nor earlier arguments based on tradeoffs among scaling factors. As in other environments, body size is inversely related to both abundance and species density. We suggest that the decrease in nutrient input with depth may select for larger size because of its metabolic or competitive advantages, and that larger size plays a role in limiting diversity. Adaptation is an important evolutionary driving force of biological diversity, and geographic patterns of body size could help unify ecological and historical theories of deep-sea biodiversity.

Fungal diversity in deep-sea sediments associated with asphalt seeps at the Sao Paulo Plateau

NASA Astrophysics Data System (ADS)

Nagano, Yuriko; Miura, Toshiko; Nishi, Shinro; Lima, Andre O.; Nakayama, Cristina; Pellizari, Vivian H.; Fujikura, Katsunori

2017-12-01

We investigated the fungal diversity in a total of 20 deep-sea sediment samples (of which 14 samples were associated with natural asphalt seeps and 6 samples were not associated) collected from two different sites at the Sao Paulo Plateau off Brazil by Ion Torrent PGM targeting ITS region of ribosomal RNA. Our results suggest that diverse fungi (113 operational taxonomic units (OTUs) based on clustering at 97% sequence similarity assigned into 9 classes and 31 genus) are present in deep-sea sediment samples collected at the Sao Paulo Plateau, dominated by Ascomycota (74.3%), followed by Basidiomycota (11.5%), unidentified fungi (7.1%), and sequences with no affiliation to any organisms in the public database (7.1%). However, it was revealed that only three species, namely Penicillium sp., Cadophora malorum and Rhodosporidium diobovatum, were dominant, with the majority of OTUs remaining a minor community. Unexpectedly, there was no significant difference in major fungal community structure between the asphalt seep and non-asphalt seep sites, despite the presence of mass hydrocarbon deposits and the high amount of macro organisms surrounding the asphalt seeps. However, there were some differences in the minor fungal communities, with possible asphalt degrading fungi present specifically in the asphalt seep sites. In contrast, some differences were found between the two different sampling sites. Classification of OTUs revealed that only 47 (41.6%) fungal OTUs exhibited >97% sequence similarity, in comparison with pre-existing ITS sequences in public databases, indicating that a majority of deep-sea inhabiting fungal taxa still remain undescribed. Although our knowledge on fungi and their role in deep-sea environments is still limited and scarce, this study increases our understanding of fungal diversity and community structure in deep-sea environments.

Late Pleistocene Sea level on the New Jersey Margin: Implications to eustasy and deep-sea temperature

USGS Publications Warehouse

Wright, J.D.; Sheridan, R.E.; Miller, K.G.; Uptegrove, J.; Cramer, B.S.; Browning, J.V.

2009-01-01

We assembled and dated a late Pleistocene sea-level record based on sequence stratigraphy from the New Jersey margin and compared it with published records from fossil uplifted coral reefs in New Guinea, Barbados, and Araki Island, as well as a composite sea-level estimate from scaling of Red Sea isotopic values. Radiocarbon dates, amino acid racemization data, and superposition constrain the ages of large (20-80??m) sea-level falls from New Jersey that correlate with Marine Isotope Chrons (MIC) 2, 3b, 4, 5b, and 6 (the past 130??kyr). The sea-level records for MIC 1, 2, 4, 5e, and 6 are similar to those reported from New Guinea, Barbados, Araki, and the Red Sea; some differences exist among records for MIC 3. Our record consistently provides the shallowest sea level estimates for MIC3 (??? 25-60??m below present); it agrees most closely with the New Guinea record of Chappell (2002; ??? 35-70??m), but contrasts with deeper estimates provided by Araki (??? 85-95??m) and the Red Sea (50-90??m). Comparison of eustatic estimates with benthic foraminiferal ??18O records shows that the deep sea cooled ??? 2.5????C between MIC 5e and 5d (??? 120-110??ka) and that near freezing conditions persisted until Termination 1a (14-15??ka). Sea-level variations between MIC 5b and 2 (ca. 90-20??ka) follow a well-accepted 0.1???/10??m linear variation predicted by ice-growth effects on foraminiferal ??18O values. The pattern of deep-sea cooling follows a previously established hysteresis loop between two stable modes of operation. Cold, near freezing deep-water conditions characterize most of the past 130??kyr punctuated only by two warm intervals (the Holocene/MIC 1 and MIC 5e). We link these variations to changes in Northern Component Water (NCW). ?? 2009 Elsevier B.V. All rights reserved.

Landsat 6 contract signed

NASA Astrophysics Data System (ADS)

Maggs, William Ward

A new agreement provides $220 million for development and construction of the Landsat 6 remote sensing satellite and its ground systems. The contract, signed on March 31, 1988, by the Department of Commerce (DOC) and the Earth Observation Satellite (EOSAT) Company of Lanham, Md., came just days after approval of DOC's Landsat commercialization plan by subcommittees of the House and Senate appropriations committees.The Landsat 6 spacecraft is due to be launched into orbit on a Titan II rocket in June 1991 from Vandenburg Air Force Base, Calif. The satellite will carry an Enhanced Thematic Mapper (ETM) sensor, an instrument sensitive to electromagnetic radiation in seven ranges or bands of wavelengths. The satellite's payload will also include the Sea Wide Field Sensor (Sea-WiFS), designed to provide information on sea surface temperature and ocean color. The sensor is being developed in a cooperative effort by EOSAT and the National Aeronautics and Space Administration (NASA). A less certain passenger is a proposed 5-m resolution, three-band sensor sensitive to visible light. EOSAT is trying to find both private financing for the device and potential buyers of the high-resolution imagery that it could produce. The company has been actively courting U.S. television networks, which have in the past used imagery from the European Système Probatoire d'Observation de la Terre (SPOT) satellite for news coverage.

China Report, Agriculture, No. 260.

DTIC Science & Technology

1983-06-09

Deep- Sea , Coastal Fishing (XINHUA, 2U May 83) 32 World Food Program To Aid PRC Dairy Industry (XINHUA, 28 May 83) 33 More on WFP Aid...PRC TO EXPAND DEEP- SEA , COASTAL FISHING OW241245 Beijing XINHUA in English 1159 GMT 24 May 83 [Text] Beijing, May 24 (XINHUA)—China will expand...fishing in the open seas while protecting, cultivating and rationally exploiting coastal resources, said Meng Xiande, director of the Aquatic

Distribution and assessment of marine debris in the deep Tyrrhenian Sea (NW Mediterranean Sea, Italy).

PubMed

Angiolillo, Michela; Lorenzo, Bianca di; Farcomeni, Alessio; Bo, Marzia; Bavestrello, Giorgio; Santangelo, Giovanni; Cau, Angelo; Mastascusa, Vincenza; Cau, Alessandro; Sacco, Flavio; Canese, Simonepietro

2015-03-15

Marine debris is a recognized global ecological concern. Little is known about the extent of the problem in the Mediterranean Sea regarding litter distribution and its influence on deep rocky habitats. A quantitative assessment of debris present in the deep seafloor (30-300 m depth) was carried out in 26 areas off the coast of three Italian regions in the Tyrrhenian Sea, using a Remotely Operated Vehicle (ROV). The dominant type of debris (89%) was represented by fishing gears, mainly lines, while plastic objects were recorded only occasionally. Abundant quantities of gears were found on rocky banks in Sicily and Campania (0.09-0.12 debris m(-2)), proving intense fishing activity. Fifty-four percent of the recorded debris directly impacted benthic organisms, primarily gorgonians, followed by black corals and sponges. This work provides a first insight on the impact of marine debris in Mediterranean deep ecosystems and a valuable baseline for future comparisons. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Novel Benzoquinone Compound Isolated from Deep-Sea Hydrothermal Vent Triggers Apoptosis of Tumor Cells.

PubMed

Xu, Chenxi; Sun, Xumei; Jin, Min; Zhang, Xiaobo

2017-06-26

Microorganisms are important sources for screening bioactive natural products. However, natural products from deep-sea microbes have not been extensively explored. In this study, the metabolites of bacteriophage GVE2 -infected ( Geobacillus sp. E263 virus) thermophilic bacterium Geobacillus sp. E263, which was isolated from a deep-sea hydrothermal vent, were characterized. A novel quinoid compound, which had anti-tumor activity, was isolated from the phage-challenged thermophile. The chemical structure analysis showed that this novel quinoid compound was 2-amino-6-hydroxy-[1,4]-benzoquinone. The results indicated that 2-amino-6-hydroxy-[1,4]-benzoquinone and its two derivatives could trigger apoptosis of gastric cancer cells and breast cancer cells by inducing the accumulation of intracellular reactive oxygen species. Therefore, our study highlighted that the metabolites from the phage-challenged deep-sea microbes might be a kind of promising sources for anti-tumor drug discovery, because of the similarity of metabolic disorder between bacteriophage-infected microbes and tumor cells.

Macroecological drivers of archaea and bacteria in benthic deep-sea ecosystems

PubMed Central

Danovaro, Roberto; Molari, Massimiliano; Corinaldesi, Cinzia; Dell’Anno, Antonio

2016-01-01

Bacteria and archaea dominate the biomass of benthic deep-sea ecosystems at all latitudes, playing a crucial role in global biogeochemical cycles, but their macroscale patterns and macroecological drivers are still largely unknown. We show the results of the most extensive field study conducted so far to investigate patterns and drivers of the distribution and structure of benthic prokaryote assemblages from 228 samples collected at latitudes comprising 34°N to 79°N, and from ca. 400- to 5570-m depth. We provide evidence that, in deep-sea ecosystems, benthic bacterial and archaeal abundances significantly increase from middle to high latitudes, with patterns more pronounced for archaea, and particularly for Marine Group I Thaumarchaeota. Our results also reveal that different microbial components show varying sensitivities to changes in temperature conditions and food supply. We conclude that climate change will primarily affect deep-sea benthic archaea, with important consequences on global biogeochemical cycles, particularly at high latitudes. PMID:27386507

Vertical transport of carbon-14 into deep-sea food webs

NASA Astrophysics Data System (ADS)

Pearcy, W. G.; Stuiver, Minze

1983-04-01

During the years 1973 to 1976 the carbon-14 content was higher in epipelagic and vertically migrating, upper mesopelagic animals (caught between 0 and 500 m) than in lower mesopelagic, bathypelagic, and abyssobenthic animals (500 to 5180 m) in the northeastern Pacific Ocean. Only one species of deep-sea fish had a Δ14C value as high as surface-caught fish. The 14C content of most animals was higher pre-bomb levels, but the relatively low 14C content of most deep-sea animals indicates that the majority of their carbon was not derived directly from a near-surface food chain labeled with bomb carbon. A mean residence time of about 35 y was estimated for the organic carbon pool for abyssobenthic animals based on the relative increase of radiocarbon in surface-dwelling animals since 1967. The results suggest that rapidly sinking particles from surface waters, such as fecal pellets, are not the major source of organic carbon for deep-sea fishes and large benthic invertebrates.

Measurement of fish movements at depths to 6000 m using a deep-ocean lander incorporating a short base-line sonar utilizing miniature code-activated transponder technology

NASA Astrophysics Data System (ADS)

Bagley, P. M.; Bradley, S.; Priede, I. G.; Gray, P.

1999-12-01

Most research on animal behaviour in the deep ocean (to depths of 6000 m) is restricted to the capture of dead specimens or viewing activity over small areas of the sea floor by means of cameras or submersibles. This paper describes the use of a miniature acoustic code-activated transponder (CAT) tag and short base-line sonar to track the movements of deep-sea fish in two dimensions over an area 1 km in diameter centred on a lander platform. The CAT tags and sonar are transported to the deep-sea floor by means of a subsea mooring which is ballasted so that it lands and remains on the sea floor for the duration of the tracking experiment (the lander). A description of the CAT, lander and short base-line sonar is given. Results are presented to illustrate the operation of the system.

New ultrasensitive pickup device for deep-sea robots: underwater super-HARP color TV camera

NASA Astrophysics Data System (ADS)

Maruyama, Hirotaka; Tanioka, Kenkichi; Uchida, Tetsuo

1994-11-01

An ultra-sensitive underwater super-HARP color TV camera has been developed. The characteristics -- spectral response, lag, etc. -- of the super-HARP tube had to be designed for use underwater because the propagation of light in water is very different from that in air, and also depends on the light's wavelength. The tubes have new electrostatic focusing and magnetic deflection functions and are arranged in parallel to miniaturize the camera. A deep sea robot (DOLPHIN 3K) was fitted with this camera and used for the first sea test in Sagami Bay, Japan. The underwater visual information was clear enough to promise significant improvements in both deep sea surveying and safety. It was thus confirmed that the Super- HARP camera is very effective for underwater use.

SEAS: Student Experiments At Sea - An Education Outreach Pilot Program Sponsored by the Ridge2000 Program

NASA Astrophysics Data System (ADS)

Goehring, L.

2004-12-01

SEAS is a pilot program for middle and high school students who want to learn science by doing science. SEAS students study the deep sea hydrothermal vent environment and learn to ask questions about this exciting, relatively unexplored world, just as researchers do. SEAS students also learn how to answer their own questions through the process of scientific investigation. With the SEAS program, students have the opportunity to participate in the actual discovery process, along side deep-sea researchers. SEAS builds upon the successes of programs like Dive&Discover and Extreme2000, which demonstrated the capability deep-sea scientists have in engaging students with live research. SEAS extends this concept by inviting students to participate in deep-sea research through formal proposal and report competitions. SEAS challenges students to higher levels of achievement. A curriculum, developed by teachers expert in the translation of scientific inquiry in the classroom, prepares students to participate. SEAS was concept-tested during the 2003-2004 school year, with 14 pilot teachers and approximately 800 students. Twenty Ridge2000 scientists contributed their time and expertise to the SEAS program in its first year. Five student proposals were selected and conducted at sea in April during a Ridge2000 research cruise to the East Pacific Rise. All results were posted to the SEAS website (http://www.ridge2000.org/SEAS/) during the cruise, and students were invited to analyze data for their final reports. Final student reports, along with scientists comments were also posted. During the 2004-2005 school year, SEAS will be evaluated for its impact on student learning and attitudes toward science. The benefits of SEAS to the Ridge2000 scientific community are many. Scientists are invited to contribute in a variety of ways, all of which help satisfy the requirement of NSFs Broader Impacts Criterion. They may contribute time and expertise by answering student questions and reviewing student proposals and reports. They may choose to host the student research on their cruise. By sharing the load, no one scientist is burdened, nor expected to contribute additional funding. The Ridge2000 Program oversees the development, execution and dissemination of SEAS, helping make outreach efficient and easy for scientists.

The Discovery of New Deep-Sea Hydrothermal Vent Communities in the Southern Ocean and Implications for Biogeography

PubMed Central

Rogers, Alex D.; Tyler, Paul A.; Connelly, Douglas P.; Copley, Jon T.; James, Rachael; Larter, Robert D.; Linse, Katrin; Mills, Rachel A.; Garabato, Alfredo Naveira; Pancost, Richard D.; Pearce, David A.; Polunin, Nicholas V. C.; German, Christopher R.; Shank, Timothy; Boersch-Supan, Philipp H.; Alker, Belinda J.; Aquilina, Alfred; Bennett, Sarah A.; Clarke, Andrew; Dinley, Robert J. J.; Graham, Alastair G. C.; Green, Darryl R. H.; Hawkes, Jeffrey A.; Hepburn, Laura; Hilario, Ana; Huvenne, Veerle A. I.; Marsh, Leigh; Ramirez-Llodra, Eva; Reid, William D. K.; Roterman, Christopher N.; Sweeting, Christopher J.; Thatje, Sven; Zwirglmaier, Katrin

2012-01-01

Since the first discovery of deep-sea hydrothermal vents along the Galápagos Rift in 1977, numerous vent sites and endemic faunal assemblages have been found along mid-ocean ridges and back-arc basins at low to mid latitudes. These discoveries have suggested the existence of separate biogeographic provinces in the Atlantic and the North West Pacific, the existence of a province including the South West Pacific and Indian Ocean, and a separation of the North East Pacific, North East Pacific Rise, and South East Pacific Rise. The Southern Ocean is known to be a region of high deep-sea species diversity and centre of origin for the global deep-sea fauna. It has also been proposed as a gateway connecting hydrothermal vents in different oceans but is little explored because of extreme conditions. Since 2009 we have explored two segments of the East Scotia Ridge (ESR) in the Southern Ocean using a remotely operated vehicle. In each segment we located deep-sea hydrothermal vents hosting high-temperature black smokers up to 382.8°C and diffuse venting. The chemosynthetic ecosystems hosted by these vents are dominated by a new yeti crab (Kiwa n. sp.), stalked barnacles, limpets, peltospiroid gastropods, anemones, and a predatory sea star. Taxa abundant in vent ecosystems in other oceans, including polychaete worms (Siboglinidae), bathymodiolid mussels, and alvinocaridid shrimps, are absent from the ESR vents. These groups, except the Siboglinidae, possess planktotrophic larvae, rare in Antarctic marine invertebrates, suggesting that the environmental conditions of the Southern Ocean may act as a dispersal filter for vent taxa. Evidence from the distinctive fauna, the unique community structure, and multivariate analyses suggest that the Antarctic vent ecosystems represent a new vent biogeographic province. However, multivariate analyses of species present at the ESR and at other deep-sea hydrothermal vents globally indicate that vent biogeography is more complex than previously recognised. PMID:22235194

The effect of diagenesis and fluid migration on rare earth element distribution in pore fluids of the northern Cascadia accretionary margin

USGS Publications Warehouse

Kim, Ji-Hoon; Torres, Marta E.; Haley, Brian A.; Kastner, Miriam; Pohlman, John W.; Riedel, Michael; Lee, Young-Joo

2012-01-01

Analytical challenges in obtaining high quality measurements of rare earth elements (REEs) from small pore fluid volumes have limited the application of REEs as deep fluid geochemical tracers. Using a recently developed analytical technique, we analyzed REEs from pore fluids collected from Sites U1325 and U1329, drilled on the northern Cascadia margin during the Integrated Ocean Drilling Program (IODP) Expedition 311, to investigate the REE behavior during diagenesis and their utility as tracers of deep fluid migration. These sites were selected because they represent contrasting settings on an accretionary margin: a ponded basin at the toe of the margin, and the landward Tofino Basin near the shelf's edge. REE concentrations of pore fluid in the methanogenic zone at Sites U1325 and U1329 correlate positively with concentrations of dissolved organic carbon (DOC) and alkalinity. Fractionations across the REE series are driven by preferential complexation of the heavy REEs. Simultaneous enrichment of diagenetic indicators (DOC and alkalinity) and of REEs (in particular the heavy elements Ho to Lu), suggests that the heavy REEs are released during particulate organic carbon (POC) degradation and are subsequently chelated by DOC. REE concentrations are greater at Site U1325, a site where shorter residence times of POC in sulfate-bearing redox zones may enhance REE burial efficiency within sulfidic and methanogenic sediment zones where REE release ensues. Cross-plots of La concentrations versus Cl, Li and Sr delineate a distinct field for the deep fluids (z > 75 mbsf) at Site U1329, and indicate the presence of a fluid not observed at the other sites drilled on the Cascadia margin. Changes in REE patterns, the presence of a positive Eu anomaly, and other available geochemical data for this site suggest a complex hydrology and possible interaction with the igneous Crescent Terrane, located east of the drilled transect.

Assessing Deep Sea Communities Through Seabed Imagery

NASA Astrophysics Data System (ADS)

Matkin, A. G.; Cross, K.; Milititsky, M.

2016-02-01

The deep sea still remains virtually unexplored. Human activity, such as oil and gas exploration and deep sea mining, is expanding further into the deep sea, increasing the need to survey and map extensive areas of this habitat in order to assess ecosystem health and value. The technology needed to explore this remote environment has been advancing. Seabed imagery can cover extensive areas of the seafloor and investigate areas where sampling with traditional coring methodologies is just not possible (e.g. cold water coral reefs). Remotely operated vehicles (ROVs) are an expensive option, so drop or towed camera systems can provide a more viable and affordable alternative, while still allowing for real-time control. Assessment of seabed imagery in terms of presence, abundance and density of particular species can be conducted by bringing together a variety of analytical tools for a holistic approach. Sixteen deep sea transects located offshore West Africa were investigated with a towed digital video telemetry system (DTS). Both digital stills and video footage were acquired. An extensive data set was obtained from over 13,000 usable photographs, allowing for characterisation of the different habitats present in terms of community composition and abundance. All observed fauna were identified to the lowest taxonomic level and enumerated when possible, with densities derived after the seabed area was calculated for each suitable photograph. This methodology allowed for consistent assessment of the different habitat types present, overcoming constraints, such as specific taxa that cannot be enumerated, such as sponges, corals or bryozoans, the presence of mobile and sessile species, or the level of taxonomic detail. Although this methodology will not enable a full characterisation of a deep sea community, in terms of species composition for instance, itt will allow a robust assessment of large areas of the deep sea in terms of sensitive habitats present and community characteristics of each habitat. Such data can be readily utilised for planning and licensing purposes and be potentially revisited in the future when taxonomic resolution increases, for a more detailed characterisation or monitoring of this poorly described environment.

Developing bioproxies of past ocean ecosystem change through compound-specific stable isotope analysis of proteinaceous deep-sea corals.

NASA Astrophysics Data System (ADS)

McMahon, K.; Williams, B.; Mccarthy, M. D.; Etnoyer, P. J.

2015-12-01

Our understanding of current and future ocean conditions is framed by our ability to reconstruct past changes in ecosystem structure and function recorded in paleoarchives. One such archive, proteinaceous deep-sea corals, act as "living sediment traps" with the potential to greatly improve our ability to reconstruct long-term, high-resolution biogeochemical records of export production. Compound-specific stable isotope analysis (CSIA) of individual amino acids (AAs) in deep-sea corals has provided highly detailed new tools to reconstruct changes in both plankton community composition and sources of nitrogen. However, to realize the full potential of CSIA in deep-sea corals, it is critical to better understand the link between the biogeochemical signatures of deep-sea coral polyp tissue and diagenetically resistant proteinaceous skeletal material. We conducted the first detailed comparison of δ13C and δ15N values for individual AAs between tissue and skeleton for three deep-sea coral genera (Primnoa, Isidella, and Kulamanamana). For δ13C values, we found minimal offsets in both essential and non-essential AAs across genera, strongly supporting coral skeleton AA fingerprinting as a new tool to reconstruct plankton community structure. Similarly, there was no significant offset in source AA δ15N values between tissue and skeleton, supporting the use of Phe δ15N as a proxy for baseline nitrogen sources. However, and rather unexpectedly, we found that the d15N values of the trophic AA group were consistently 3-4‰ lighter in skeleton than polyp tissue for all three genera. We hypothesize that this may reflect a partitioning of either N flux or pathways associated with AA transamination between polyp and skeleton tissues. This offset leads to an underestimate of trophic position using current CSIA-based calculations. Overall, our work strongly supports the applicability of CSIA in proteinaceous deep-sea corals to reconstruct past changes in biogeochemical cycling and plankton community dynamics. However, it also indicates that a new correction factor will be required to reconstruct accurate records of change in plankton trophic structure.

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)

PubMed Central

Yakimov, Michail M; Cono, Violetta La; Smedile, Francesco; DeLuca, Thomas H; Juárez, Silvia; Ciordia, Sergio; Fernández, Marisol; Albar, Juan Pablo; Ferrer, Manuel; Golyshin, Peter N; Giuliano, Laura

2011-01-01

Mesophilic Crenarchaeota have recently been thought to be significant contributors to nitrogen (N) and carbon (C) cycling. In this study, we examined the vertical distribution of ammonia-oxidizing Crenarchaeota at offshore site in Southern Tyrrhenian Sea. The median value of the crenachaeal cell to amoA gene ratio was close to one suggesting that virtually all deep-sea Crenarchaeota possess the capacity to oxidize ammonia. Crenarchaea-specific genes, nirK and ureC, for nitrite reductase and urease were identified and their affiliation demonstrated the presence of ‘deep-sea' clades distinct from ‘shallow' representatives. Measured deep-sea dark CO2 fixation estimates were comparable to the median value of photosynthetic biomass production calculated for this area of Tyrrhenian Sea, pointing to the significance of this process in the C cycle of aphotic marine ecosystems. To elucidate the pivotal organisms in this process, we targeted known marine crenarchaeal autotrophy-related genes, coding for acetyl-CoA carboxylase (accA) and 4-hydroxybutyryl-CoA dehydratase (4-hbd). As in case of nirK and ureC, these genes are grouped with deep-sea sequences being distantly related to those retrieved from the epipelagic zone. To pair the molecular data with specific functional attributes we performed [14C]HCO3 incorporation experiments followed by analyses of radiolabeled proteins using shotgun proteomics approach. More than 100 oligopeptides were attributed to 40 marine crenarchaeal-specific proteins that are involved in 10 different metabolic processes, including autotrophy. Obtained results provided a clear proof of chemolithoautotrophic physiology of bathypelagic crenarchaeota and indicated that this numerically predominant group of microorganisms facilitate a hitherto unrecognized sink for inorganic C of a global importance. PMID:21209665

Trophic ecology of deep-sea Asteroidea (Echinodermata) from eastern Canada

NASA Astrophysics Data System (ADS)

Gale, Katie S. P.; Hamel, Jean-François; Mercier, Annie

2013-10-01

Asteroids (sea stars) can be important predators in benthic communities and are often present in ecologically important and vulnerable deep-sea coral and sponge habitats. However, explicit studies on the trophic ecology of deep-sea asteroids are rare. We investigated the diets of seven species of deep-sea asteroid from the bathyal zone of Newfoundland and Labrador, eastern Canada. A multifaceted approach including live animal observations, stomach content analysis, and stable isotope analysis revealed the asteroids to be either top predators of megafauna or secondary consumers (mud ingesters, infaunal predators, and suspension feeders). The stable isotope signatures of Ceramaster granularis, Hippasteria phrygiana, and Mediaster bairdi are characteristic of high-level predators, having δ15N values 4.4‰ (more than one trophic level) above Ctenodiscus crispatus, Leptychaster arcticus, Novodinia americana, and Zoroaster fulgens. We present strong evidence that corals and sponges are common food items for two of the predatory species, C. granularis and H. phrygiana. During laboratory feeding trials, live H. phrygiana fed on several species of soft coral and C. granularis fed on sponges. Stomach content analysis of wild-caught individuals revealed sclerites from sea pens (e.g. Pennatula sp.) in the stomachs of both asteroid species; H. phrygiana also contained sclerites from at least two other species of octocoral and siliceous sponge spicules were present in the stomachs of C. granularis. The stomach contents of the secondary consumers contained a range of invertebrate material. Leptychaster arcticus and Ctenodiscus crispatus feed infaunally on bulk sediment and molluscs, Zoroaster fulgens is a generalist infaunal predator, and the brisingid Novodinia americana is a specialist suspension feeder on benthopelagic crustaceans. This study provides a foundation for understanding the ecological roles of bathyal asteroids, and suggests that some species may have the potential to be important modulators of deep-sea benthic communities.

Deep-Sea Trench Microbiology Down to 10.9 Kilometers Below the Surface

NASA Astrophysics Data System (ADS)

Bartlett, D. H.

2012-12-01

Deep-sea trenches, extending to more than 10.9 km below the sea surface, are among the most remote and infrequently sampled habitats. As a result a global perspective of microbial diversity and adaptation is lacking in these extreme settings. I will present the results of studies of deep-sea trench microbes collected in the Puerto Rico Trench (PRT), Tonga Trench, New Britain Trench and Mariana Trench. The samples collected include sediment, seawater and animals in baited traps. The analyses to be described include microbial community activity and viability measurements as a function of hydrostatic pressure, microbial culturing at high pressure under various physiological conditions, phylogenetics and metagenome and single-cell genome characterizations. Most of the results to date stem from samples recovered from the PRT. The deep-sea PRT Trench microbes have more in common at the species level with other deep-sea microbial communities previously characterized in the Pacific Ocean and the Mediterranean Sea than with the microbial populations above them in shallow waters. They also harbor larger genomes with more genes assigned to signal transduction, transcription, replication, recombination and repair and inorganic ion transport. The overrepresented transporters in the PRT metagenome include di- and tri-carboxylate transporters that correspond to the prevailing catabolic processes such as butanoate, glyoxylate and dicarboxylate metabolism. A surprisingly high abundance of sulfatases for the degradation of sulfated polysaccharides were also present in the PRT. But, perhaps the most dramatic adaptational feature of the PRT microbes is heavy metal resistance, as reflected in the high numbers of metal efflux systems present. Single-cell genomics approaches have proven particularly useful for placing PRT metagenomic data into context.

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea).

PubMed

Yakimov, Michail M; Cono, Violetta La; Smedile, Francesco; DeLuca, Thomas H; Juárez, Silvia; Ciordia, Sergio; Fernández, Marisol; Albar, Juan Pablo; Ferrer, Manuel; Golyshin, Peter N; Giuliano, Laura

2011-06-01

Mesophilic Crenarchaeota have recently been thought to be significant contributors to nitrogen (N) and carbon (C) cycling. In this study, we examined the vertical distribution of ammonia-oxidizing Crenarchaeota at offshore site in Southern Tyrrhenian Sea. The median value of the crenachaeal cell to amoA gene ratio was close to one suggesting that virtually all deep-sea Crenarchaeota possess the capacity to oxidize ammonia. Crenarchaea-specific genes, nirK and ureC, for nitrite reductase and urease were identified and their affiliation demonstrated the presence of 'deep-sea' clades distinct from 'shallow' representatives. Measured deep-sea dark CO(2) fixation estimates were comparable to the median value of photosynthetic biomass production calculated for this area of Tyrrhenian Sea, pointing to the significance of this process in the C cycle of aphotic marine ecosystems. To elucidate the pivotal organisms in this process, we targeted known marine crenarchaeal autotrophy-related genes, coding for acetyl-CoA carboxylase (accA) and 4-hydroxybutyryl-CoA dehydratase (4-hbd). As in case of nirK and ureC, these genes are grouped with deep-sea sequences being distantly related to those retrieved from the epipelagic zone. To pair the molecular data with specific functional attributes we performed [(14)C]HCO(3) incorporation experiments followed by analyses of radiolabeled proteins using shotgun proteomics approach. More than 100 oligopeptides were attributed to 40 marine crenarchaeal-specific proteins that are involved in 10 different metabolic processes, including autotrophy. Obtained results provided a clear proof of chemolithoautotrophic physiology of bathypelagic crenarchaeota and indicated that this numerically predominant group of microorganisms facilitate a hitherto unrecognized sink for inorganic C of a global importance.

Coral Dermatitis or Infectious Dermatitis: Report of a Case of Staphylococcus Aureus Infection of Skin After Scuba Diving

PubMed Central

2018-01-01

Skin lesion which develops after deep sea diving is termed as coral dermatitis. The corals are known to produce a toxic substance which when comes in to contact with human skin may elicit hypersensitive reactions. Most previous reports highlight the allergic reactions caused by deep sea diving. This is a rare case of staphylococcal skin infection in a second-year medical student caused by Staphylococcus aureus; he reported a history of deep sea diving before being presented to the hospital with skin rashes. This case highlights the importance of considering infectious aetiology in cases of coral dermatitis. PMID:29666774

Microplastic pollution identified in deep-sea water and ingested by benthic invertebrates in the Rockall Trough, North Atlantic Ocean.

PubMed

Courtene-Jones, Winnie; Quinn, Brian; Gary, Stefan F; Mogg, Andrew O M; Narayanaswamy, Bhavani E

2017-12-01

Microplastics are widespread in the natural environment and present numerous ecological threats. While the ultimate fate of marine microplastics are not well known, it is hypothesized that the deep sea is the final sink for this anthropogenic contaminant. This study provides a quantification and characterisation of microplastic pollution ingested by benthic macroinvertebrates with different feeding modes (Ophiomusium lymani, Hymenaster pellucidus and Colus jeffreysianus) and in adjacent deep water > 2200 m, in the Rockall Trough, Northeast Atlantic Ocean. Despite the remote location, microplastic fibres were identified in deep-sea water at a concentration of 70.8 particles m -3 , comparable to that in surface waters. Of the invertebrates examined (n = 66), 48% ingested microplastics with quantities enumerated comparable to coastal species. The number of ingested microplastics differed significantly between species and generalized linear modelling identified that the number of microplastics ingested for a given tissue mass was related to species and not organism feeding mode or the length or overall weight of the individual. Deep-sea microplastics were visually highly degraded with surface areas more than double that of pristine particles. The identification of synthetic polymers with densities greater and less than seawater along with comparable quantities to the upper ocean indicates processes of vertical re-distribution. This study presents the first snapshot of deep ocean microplastics and the quantification of microplastic pollution in the Rockall Trough. Additional sampling throughout the deep-sea is required to assess levels of microplastic pollution, vertical transportation and sequestration, which have the potential to impact the largest global ecosystem. Copyright © 2017 Elsevier Ltd. All rights reserved.

Structural properties of dissolved organic carbon in deep horizons of an arable soil.

NASA Astrophysics Data System (ADS)

Lavaud, A.; Croué, Jp; Berwick, L.; Steffens, M.; Chabbi, A.

2010-05-01

The objective of this work is to quantity the DOC that percolates in deep horizons of an arable soil, and to characterize the structural properties of the main fractions. The study was conducted on the long term observatory for environmental research- biogeochemical cycles and biodiversity Lusignan site-France. DOC collected using lysimeter plates inserted to a depth of 105 cm was fractionated into 3 fractions using the two column array of XAD-8 and XAD-4 resins. The HPO (hydrophobic) fraction (i.e. humic substances) isolated from the XAD-8 resin, the TPH (Transphilic) fraction from the XAD-4 resin and the HPI (hydrophilic) fraction which corresponds to the DOC that does not adsorbed onto the two resins under the acid condition used (pH 2). DOM adsorbed onto the resins is recovered with a 75%/25% acetonitrile/water mixture and lyophilized. The hydrophilic fraction is purified according the protocol proposed by Aiken and Leenheer (1993). The isolated fractions were subjected to several characterization tools: UV/Vis, fluorescence EEM, HPSEC/UV/DOC, 13C NMR, 14C dating, FT-IR, pyrolysis, thermochemolysis and MSSV GC/MS. The DOC content ranged from 1 to 2.5 mg / L between winter and the middle of spring and then to 4-5 mg / L in summer time. For all isolated fractions HPSEC analyses indicated the predominance of low molecular structures with a low aromatic character. Fluorescence EEM confirmed the non-humic character of the DOM. 13C-NMR spectra showed that the aromatic character decreased from HPO to TPH, and HPI character. Molecular size follows the same trend. HPI DOM was found to be strongly enriched in carboxyl groups. The 14C concentration of the HPO fraction corresponds to an apparent calibrated age around AD 1500. For the same fraction isolated from the 0 - 30 cm horizon, the measured 14C concentration 131.9 pMC corresponds to that in the atmosphere around AD 1978. Significant input of terpenoid derived organic matter was confirmed in the HPO fraction of DOC, results supported by the data of 13C NMR, FT-IR and Micro Scale Sealed Vessel / pyrolysis GC / MS. Flash pyrolysis GC / MS chromatogram highlight the presence of phenol and alkyl phenols, generally attributed to structures polyhydroxyaromatic structures. Acetamide, a pyrolysis product of amino sugars constituents of microbial cell wall is also significantly present. The thermochimiolysis (TMAH)/GC/ MS confirmed the presence of hydroxy aromatic structures in the extracts; however, their precise origin (lignin, tannins ...) remains uncertain.

Glacial - interglacial changes of northwest Pacific stratification, inferred from deep and shallow living radiolarians

NASA Astrophysics Data System (ADS)

Hays, J. D.

2009-12-01

Shallow (0-200m) and deep (200 to1000m) living radiolarian flux is used to measure past production from within discrete intervals of the ocean’s water column. Deep-living faunas can also be used as proxies for export production, for they remineralize it and respond geographically and temporally to varying export. Few members of the mesopelagic community leave a fossil record, but of those that do, radiolarians are the most abundant and diverse group. In northwest Pacific late Pleistocene (glacial) sediments, deep-living radiolarian flux dominates over shallow-living flux, but the reverse is true in Holocene sediments, with the dramatic dominance change occurring across the Pleistocene-Holocene boundary. Changing primary productivity can’t cause these flux changes, for shallow-living faunas have access to the same carbon flux as do deep-living faunas, but rather they signal a major reorganization of the radiolarian fauna within the water column and suggest greater glacial than Holocene carbon export. In the Holocene world-ocean, the only region where deep-living radiolarian flux dominates over shallow-living flux is in the Sea of Okhotsk, suggesting environmental similarities between this sea and the northwest Pacific. In winter, cold Siberian air chills the upper hundred meters of the Sea of Okhotsk, promoting the spread of vast sea ice fields. High productivity in a thin (10-15m) summer mixed layer depletes nutrients Between 15 and about 150m exists a layer of cold (-1 to 0 degrees C.) intermediate water, within which radiolarian concentrations are low, but these concentrations increase between 200 and 500m in warmer intermediate water (Nimmergut and Abelmann, 2002). This radiolarian stratification results in greater deep- than shallow-living radiolarian flux to the sea floor. A similar water structure in the glacial northwest Pacific is the probable cause of similar flux patterns between the glacial northwest Pacific and Holocene Sea of Okhotsk. If so then cold glacial northwest Pacific intermediate water promoted the southward spread of sea ice. This inference is supported by the near coincidence of the southern limit of deep-living species dominated glacial sediments and extensive ice rafting. It also explains nutrient depleted glacial northwest Pacific surface waters inferred from isotopic data.

High-Resolution Measurements of Coastal Bioluminescence

DTIC Science & Technology

2006-09-30

cover) Dunn, C.W., P.R. Pugh, and S.H.D. Haddock (2005) Marrus claudanielis, a new species of deep- sea physonect siphonophore (Siphonophora...in a deep-sea siphonophore . Science. 309:263 Haddock, S.H.D., C.W. Dunn, P.R. Pugh. (2005) A reexamination of siphonophore terminology and

Transitional changes in microfossil assemblages in the Japan Sea from the Late Pliocene to Early Pleistocene related to global climatic and local tectonic events

NASA Astrophysics Data System (ADS)

Itaki, Takuya

2016-12-01

Many micropaleontological studies based on data from on-land sections, oil wells, and deep-sea drilling cores have provided important information about environmental changes in the Japan Sea that are related to the global climate and the local tectonics of the Japanese Islands. Here, major changes in the microfossil assemblages during the Late Pliocene to Early Pleistocene are reviewed. Late Pliocene (3.5-2.7 Ma) surface-water assemblages were characterized mainly by cold-temperate planktonic flora and fauna (nannofossils, diatoms, radiolarians, and planktonic foraminifera), suggesting that nutrient-rich North Pacific surface waters entered the Japan Sea via northern straits. The common occurrence of Pacific-type deep-water radiolarians during this period also suggests that deep water from the North Pacific entered the Japan Sea via the northern straits, indicating a sill depth >500 m. A weak warm-water influence is recognized along the Japanese coast, suggesting a small inflow of warm water via a southern strait. Nannofossil and sublittoral ostracod assemblages record an abrupt cooling event at 2.75 Ma that correlates with the onset of the Northern Hemisphere glaciation. Subsequently, cold intermediate- and deep-water assemblages of ostracods and radiolarians increased in abundance, suggesting active ventilation and the formation of the Japan Sea Proper Water, associated with a strengthened winter monsoon. Pacific-type deep-water radiolarians also disappeared around 2.75 Ma, which is attributed to the intermittent occurrence of deep anoxic environments and limited migration from the North Pacific, resulting from the near-closure or shallowing of the northern strait by a eustatic fall in sea level and tectonic uplift of northeastern Japan. A notable reduction in primary productivity from 2.3 to 1.3 Ma also suggests that the nutrient supply from the North Pacific was restricted by the near-closure of the northern strait. An increase in the abundance of subtropical surface fauna suggests that the inflow of the Tsushima Warm Current into the Japan Sea via a southern strait began at 1.7 Ma. The opening of the southern strait may have occurred after the subsidence of southwestern Japan.

Accumulation of artificial radionuclides in deep sediments of the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Garcia-Orellana, J.; Sanchez-Cabeza, J. A.; Masque, P.; Costa, E.; Bruach, J. M.; Morist, A.; Luna, J. A.

2003-04-01

Concentrations and inventories of artificial radionuclides (90Sr, 137Cs and 239,40Pu) were determined in deep sediment cores (3.000 m) collected in the western and eastern basins of the Mediterranean Sea in the frame of the ADIOS project. Artificial radionuclides enter the Mediterranean Sea mainly though atmospheric deposition after nuclear weapons tests and the Chernobyl accident, but also through the river discharge of effluents of nuclear facilities (e.g. Rhone and Ebro rivers). The aim of this work is to investigate the degree by which pollutants are transferred to the deep environment of the Mediterranean Sea as a basis to elucidate their effects on benthic organisms. The mean inventories of 239+240Pu, 137Cs and 90Sr in the Western basin are 2.77 ± 0.26, 68 ± 12 and < 7 Bq\\cdotm-2 respectively and 3.29 ± 0.60, 115 ± 33 and 249±154 Bq\\cdotm-2 in the Eastern basin. The activity - depth profiles of 210Pb, together with 14C dating, indicate that sediment mixing redistributes the artificial radionuclides within the first 2 cm of the sedimentary column. Artificial radionuclides inventories in the deep-sea sediments were used to calculate the fraction of the total inventory of artificial radionuclides that is accumulated in the deep sea sediments after scavenging from the water column. Indeed, a balance of the radionuclide distributions in the water column allows evaluating the importance of lateral transport of particulate matter from the continental margins on the accumulation of artificial radionuclides in the deep, open Mediterranean Sea. This is achieved in i) comparison with reported data from coastal areas at different locations in the Mediterranean Sea, and ii) balance of the distribution of the natural radionuclide 210Pb in studied areas (vertical profiles of dissolved and particulate activities, fluxes determined by using sediment trap deployed at different depths and inventories in the bottom sediments). The results, taking into account radioactive decay and exchange fluxes through the Gibraltar Strait, permit to estimate the residence times of pollutants in the water column and predict future evolution of their distributions.

Adaptation to the deep-sea hydrothermal vents and cold seeps: Insights from the transcriptomes of Alvinocaris longirostris in both environments

NASA Astrophysics Data System (ADS)

Hui, Min; Cheng, Jiao; Sha, Zhongli

2018-05-01

Alvinocaris longirostris Kikuchi and Ohta, 1995 is one of the few species co-distributed in deep-sea hydrothermal vent and cold seep environments. We performed the transcriptome analysis for A. longirostris and identified differentially expressed genes (DEGs) between samples from the Iheya North hydrothermal vent (HV) and a methane seep in the South China Sea (MS). From the 57,801 annotated unigenes, multi-copies of enzyme family members for eliminating toxic xenobiotics were isolated and seven putatively duplicated gene clusters of cytochrome P450s were discovered, which may contribute to adaptation to the harsh conditions. Eight single amino acid substitutions of a Rhodopsin gene with low expression in two deep-sea alvinocaridid species were positively selected when compared with shallow water shrimps, which may be the result of adaptation to the dim-light environment in deep sea. 408 DEGs were identified with 53 and 355 up-regulated in HV and MS, respectively. Various genes associated with sulfur metabolism, detoxification and mitochondria were included, revealing different mechanisms of adaptation to the two types of extreme environments. All results are expected to serve as important basis for the further study.

In-situ measurements of rare earth elements in deep sea sediments using nuclear methods.

PubMed

Obhođaš, Jasmina; Sudac, Davorin; Meric, Ilker; Pettersen, Helge E S; Uroić, Milivoj; Nađ, Karlo; Valković, Vlado

2018-03-21

The prospecting activities for finding new rare earth elements (REE) sources have increased greatly in recent years. One of the main discoveries was announced in 2011 by Japanese researchers who found large quantities of REE on the ocean seafloor at the sea depths greater than 4,000 m. The classic approach to investigate REE in deep sea sediments is to obtain sediment samples by drilling that is followed by laborious laboratory analysis. This is very expensive, time consuming and not appropriate for exploring vast areas. In order to efficiently explore the ocean floor for REE deposits, the further development of affordable sensors is needed. Here, we propose two nuclear techniques for exploring REE in surface deep sea sediments: i) Passive measurement of lutetium-176 radioactivity, appropriate if long-term in-situ measurements are possible, and ii) The use of the neutron sensor attached to a remotely operated vehicle for rapid in-situ measurement of gadolinium by thermal neutron-capture. Since concentrations of lutetium and gadolinium show strong linear correlation to the total REE concentrations in deep sea sediments, it is possible to deduce the total REE content by measuring Lu or Gd concentrations only.

From principles to practice: a spatial approach to systematic conservation planning in the deep sea.

PubMed

Wedding, L M; Friedlander, A M; Kittinger, J N; Watling, L; Gaines, S D; Bennett, M; Hardy, S M; Smith, C R

2013-12-22

Increases in the demand and price for industrial metals, combined with advances in technological capabilities have now made deep-sea mining more feasible and economically viable. In order to balance economic interests with the conservation of abyssal plain ecosystems, it is becoming increasingly important to develop a systematic approach to spatial management and zoning of the deep sea. Here, we describe an expert-driven systematic conservation planning process applied to inform science-based recommendations to the International Seabed Authority for a system of deep-sea marine protected areas (MPAs) to safeguard biodiversity and ecosystem function in an abyssal Pacific region targeted for nodule mining (e.g. the Clarion-Clipperton fracture zone, CCZ). Our use of geospatial analysis and expert opinion in forming the recommendations allowed us to stratify the proposed network by biophysical gradients, maximize the number of biologically unique seamounts within each subregion, and minimize socioeconomic impacts. The resulting proposal for an MPA network (nine replicate 400 × 400 km MPAs) covers 24% (1 440 000 km(2)) of the total CCZ planning region and serves as example of swift and pre-emptive conservation planning across an unprecedented area in the deep sea. As pressure from resource extraction increases in the future, the scientific guiding principles outlined in this research can serve as a basis for collaborative international approaches to ocean management.

From principles to practice: a spatial approach to systematic conservation planning in the deep sea

PubMed Central

Wedding, L. M.; Friedlander, A. M.; Kittinger, J. N.; Watling, L.; Gaines, S. D.; Bennett, M.; Hardy, S. M.; Smith, C. R.

2013-01-01

Increases in the demand and price for industrial metals, combined with advances in technological capabilities have now made deep-sea mining more feasible and economically viable. In order to balance economic interests with the conservation of abyssal plain ecosystems, it is becoming increasingly important to develop a systematic approach to spatial management and zoning of the deep sea. Here, we describe an expert-driven systematic conservation planning process applied to inform science-based recommendations to the International Seabed Authority for a system of deep-sea marine protected areas (MPAs) to safeguard biodiversity and ecosystem function in an abyssal Pacific region targeted for nodule mining (e.g. the Clarion–Clipperton fracture zone, CCZ). Our use of geospatial analysis and expert opinion in forming the recommendations allowed us to stratify the proposed network by biophysical gradients, maximize the number of biologically unique seamounts within each subregion, and minimize socioeconomic impacts. The resulting proposal for an MPA network (nine replicate 400 × 400 km MPAs) covers 24% (1 440 000 km2) of the total CCZ planning region and serves as example of swift and pre-emptive conservation planning across an unprecedented area in the deep sea. As pressure from resource extraction increases in the future, the scientific guiding principles outlined in this research can serve as a basis for collaborative international approaches to ocean management. PMID:24197407

Precision-cut liver slices to investigate responsiveness of deep-sea fish to contaminants at high pressure.

PubMed

Lemaire, Benjamin; Debier, Cathy; Calderon, Pedro Buc; Thomé, Jean Pierre; Stegeman, John; Mork, Jarle; Rees, Jean François

2012-09-18

While deep-sea fish accumulate high levels of persistent organic pollutants (POPs), the toxicity associated with this contamination remains unknown. Indeed, the recurrent collection of moribund individuals precludes experimental studies to investigate POP effects in this fauna. We show that precision-cut liver slices (PCLS), an in vitro tool commonly used in human and rodent toxicology, can overcome such limitation. This technology was applied to individuals of the deep-sea grenadier Coryphaenoides rupestris directly upon retrieval from 530-m depth in Trondheimsfjord (Norway). PCLS remained viable and functional for 15 h when maintained in an appropriate culture media at 4 °C. This allowed experimental exposure of liver slices to the model POP 3-methylcholanthrene (3-MC; 25 μM) at levels of hydrostatic pressure mimicking shallow (0.1 megapascal or MPa) and deep-sea (5-15 MPa; representative of 500-1500 m depth) environments. As in shallow water fish, 3-MC induced the transcription of the detoxification enzyme cytochrome P4501A (CYP1A; a biomarker of exposure to POPs). This induction was diminished at elevated pressure, suggesting a limited responsiveness of C. rupestris toward POPs in its native environment. This very first in vitro toxicological investigation on a deep-sea fish opens the route for understanding pollutants effects in this highly exposed fauna.

From deep-sea volcanoes to human pathogens: a conserved quorum-sensing signal in Epsilonproteobacteria

PubMed Central

Pérez-Rodríguez, Ileana; Bolognini, Marie; Ricci, Jessica; Bini, Elisabetta; Vetriani, Costantino

2015-01-01

Chemosynthetic Epsilonproteobacteria from deep-sea hydrothermal vents colonize substrates exposed to steep thermal and redox gradients. In many bacteria, substrate attachment, biofilm formation, expression of virulence genes and host colonization are partly controlled via a cell density-dependent mechanism involving signal molecules, known as quorum sensing. Within the Epsilonproteobacteria, quorum sensing has been investigated only in human pathogens that use the luxS/autoinducer-2 (AI-2) mechanism to control the expression of some of these functions. In this study we showed that luxS is conserved in Epsilonproteobacteria and that pathogenic and mesophilic members of this class inherited this gene from a thermophilic ancestor. Furthermore, we provide evidence that the luxS gene is expressed—and a quorum-sensing signal is produced—during growth of Sulfurovum lithotrophicum and Caminibacter mediatlanticus, two Epsilonproteobacteria from deep-sea hydrothermal vents. Finally, we detected luxS transcripts in Epsilonproteobacteria-dominated biofilm communities collected from deep-sea hydrothermal vents. Taken together, our findings indicate that the epsiloproteobacterial lineage of the LuxS enzyme originated in high-temperature geothermal environments and that, in vent Epsilonproteobacteria, luxS expression is linked to the production of AI-2 signals, which are likely produced in situ at deep-sea vents. We conclude that the luxS gene is part of the ancestral epsilonproteobacterial genome and represents an evolutionary link that connects thermophiles to human pathogens. PMID:25397946

High fungal diversity and abundance recovered in the deep-sea sediments of the Pacific Ocean.

PubMed

Xu, Wei; Pang, Ka-Lai; Luo, Zhu-Hua

2014-11-01

Knowledge about the presence and ecological significance of bacteria and archaea in the deep-sea environments has been well recognized, but the eukaryotic microorganisms, such as fungi, have rarely been reported. The present study investigated the composition and abundance of fungal community in the deep-sea sediments of the Pacific Ocean. In this study, a total of 1,947 internal transcribed spacer (ITS) regions of fungal rRNA gene clones were recovered from five sediment samples at the Pacific Ocean (water depths ranging from 5,017 to 6,986 m) using three different PCR primer sets. There were 16, 17, and 15 different operational taxonomic units (OTUs) identified from fungal-universal, Ascomycota-, and Basidiomycota-specific clone libraries, respectively. Majority of the recovered sequences belonged to diverse phylotypes of Ascomycota (25 phylotypes) and Basidiomycota (18 phylotypes). The multiple primer approach totally recovered 27 phylotypes which showed low similarities (≤97 %) with available fungal sequences in the GenBank, suggesting possible new fungal taxa occurring in the deep-sea environments or belonging to taxa not represented in the GenBank. Our results also recovered high fungal LSU rRNA gene copy numbers (3.52 × 10(6) to 5.23 × 10(7)copies/g wet sediment) from the Pacific Ocean sediment samples, suggesting that the fungi might be involved in important ecological functions in the deep-sea environments.

From deep-sea volcanoes to human pathogens: a conserved quorum-sensing signal in Epsilonproteobacteria.

PubMed

Pérez-Rodríguez, Ileana; Bolognini, Marie; Ricci, Jessica; Bini, Elisabetta; Vetriani, Costantino

2015-05-01

Chemosynthetic Epsilonproteobacteria from deep-sea hydrothermal vents colonize substrates exposed to steep thermal and redox gradients. In many bacteria, substrate attachment, biofilm formation, expression of virulence genes and host colonization are partly controlled via a cell density-dependent mechanism involving signal molecules, known as quorum sensing. Within the Epsilonproteobacteria, quorum sensing has been investigated only in human pathogens that use the luxS/autoinducer-2 (AI-2) mechanism to control the expression of some of these functions. In this study we showed that luxS is conserved in Epsilonproteobacteria and that pathogenic and mesophilic members of this class inherited this gene from a thermophilic ancestor. Furthermore, we provide evidence that the luxS gene is expressed--and a quorum-sensing signal is produced--during growth of Sulfurovum lithotrophicum and Caminibacter mediatlanticus, two Epsilonproteobacteria from deep-sea hydrothermal vents. Finally, we detected luxS transcripts in Epsilonproteobacteria-dominated biofilm communities collected from deep-sea hydrothermal vents. Taken together, our findings indicate that the epsiloproteobacterial lineage of the LuxS enzyme originated in high-temperature geothermal environments and that, in vent Epsilonproteobacteria, luxS expression is linked to the production of AI-2 signals, which are likely produced in situ at deep-sea vents. We conclude that the luxS gene is part of the ancestral epsilonproteobacterial genome and represents an evolutionary link that connects thermophiles to human pathogens.

Genetic homogeneity in the deep-sea grenadier Macrourus berglax across the North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Coscia, Ilaria; Castilho, Rita; Massa-Gallucci, Alexia; Sacchi, Carlotta; Cunha, Regina L.; Stefanni, Sergio; Helyar, Sarah J.; Knutsen, Halvor; Mariani, Stefano

2018-02-01

Paucity of data on population structure and connectivity in deep sea species remains a major obstacle to their sustainable management and conservation in the face of ever increasing fisheries pressure and other forms of impacts on deep sea ecosystems. The roughhead grenadier Macrourus berglax presents all the classical characteristics of a deep sea species, such as slow growth and low fecundity, which make them particularly vulnerable to anthropogenic impact, due to their low resilience to change. In this study, the population structure of the roughhead grenadier is investigated throughout its geographic distribution using two sets of molecular markers: a partial sequence of the Control Region of mitochondrial DNA and species-specific microsatellites. No evidence of significant structure was found throughout the North Atlantic, with both sets of molecular markers yielding the same results of overall homogeneity. We posit two non-mutually exclusive scenarios that can explain such outcome: i) substantial high gene flow among locations, possibly maintained by larval stages, ii) very large effective size of post-glacially expanded populations. The results can inform management strategies in this by-caught species, and contribute to the broader issue of biological connectivity in the deep ocean.

Sea breeze: Induced mesoscale systems and severe weather

NASA Technical Reports Server (NTRS)

Nicholls, M. E.; Pielke, R. A.; Cotton, W. R.

1990-01-01

Sea-breeze-deep convective interactions over the Florida peninsula were investigated using a cloud/mesoscale numerical model. The objective was to gain a better understanding of sea-breeze and deep convective interactions over the Florida peninsula using a high resolution convectively explicit model and to use these results to evaluate convective parameterization schemes. A 3-D numerical investigation of Florida convection was completed. The Kuo and Fritsch-Chappell parameterization schemes are summarized and evaluated.

Application of biomimetics principles in space optics

NASA Astrophysics Data System (ADS)

Remisova, K.; Hudec, R.

2017-09-01

The principles of biomimetics have been successfully applied in space optics, e.g. in Lobster-Eye X-ray optical systems. However, the recent increase in knowledge on vision of sea animals, especially on mirror eyes of scallops, crustaceans, and deep sea fishes, makes possible to consider other such applications. Especially the discoveries of mirror eyes of the deep sea fishes Dolichopteryx longipes and Rhynchohyalus natalensis are promising because of their unique arrangements and likely active optics.

Deep Water Ocean Acoustics (DWOA): The Philippine Sea, OBSANP, and THAAW Experiments

DTIC Science & Technology

2015-09-30

the travel times. 4 The ocean state estimates were then re-computed to fit the acoustic travel times as integrals of the sound speed, and...1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Deep Water Ocean Acoustics (DWOA): The Philippine Sea...deep-water acoustic propagation and ambient noise has been collected in a wide variety of environments over the last few years with ONR support

Argo float observations of basin-scale deep convection in the Irminger Sea during winter 2011-2012

NASA Astrophysics Data System (ADS)

Thierry, V.; Piron, A.; Mercier, H.; Caniaux, G.

2016-02-01

An analysis of Argo data during the 2011-2012 winter revealed the presence of an exceptionally large number of profiles over the Irminger Basin with mixed layer depths (MLD) exceeding 700 m, which was deep enough to reach the pool of the intermediate Labrador Sea Water located in the Irminger Sea. Among them, 4 profiles exhibited an MLD of 1000 m, which was the maximum value observed this winter. Owing to the exceptional Argo sampling in the Irminger Sea during that winter the different phases of the mixed layer deepening down to 1000 m and their spatial extents were observed for the first time in the Irminger Sea. Two intense convective periods occurred in late January south of Cape Farewell and in late February-early March east of Greenland. A final deepening period was observed in mid-March during which the deepest mixed layers were observed. This long deepening period occurred in large regional areas and was followed by a rapid restratification phase. A mixed layer heat budget along the trajectories of the 4 floats that sampled the deepest mixed layers showed that heat loss at the air-sea interface was mainly responsible for heat content variations in the mixed layer. Greenland Tip Jets were of primary importance for the development of deep convection in the Irminger Sea in the 2011-2012 winter. They enhanced the winter heat loss and two long (more than 24 hours), intense and close in time late events boosted the mixed layer deepening down to 1000m. Net air-sea fluxes, the number of Greenland Tip Jets, the stratification of the water column, the NAO index and Ekman-induced heat flux are pertinent indicators to assess the favorable conditions for the development of deep convection in the Irminger Sea. When considering each of those indicators, we concluded that the 2011-2012 event was not significantly different compared to the three other documented occurrences of deep convection in the Irminger Sea.This work is a contribution to the NAOS project.

Telepresence-Enabled Remote Fieldwork: Undergraduate Research in the Deep Sea

ERIC Educational Resources Information Center

Stephens, A. Lynn; Pallant, Amy; McIntyre, Cynthia

2016-01-01

Deep-sea research is rarely available to undergraduate students. However, as telepresence technology becomes more available, doors may open for more undergraduates to pursue research that includes remote fieldwork. This descriptive case study is an initial investigation into whether such technology might provide a feasible opportunity for…

Identification of new deep sea sinuous channels in the eastern Arabian Sea.

PubMed

Mishra, Ravi; Pandey, D K; Ramesh, Prerna; Clift, Peter D

2016-01-01

Deep sea channel systems are recognized in most submarine fans worldwide as well as in the geological record. The Indus Fan is the second largest modern submarine fan, having a well-developed active canyon and deep sea channel system. Previous studies from the upper Indus Fan have reported several active channel systems. In the present study, deep sea channel systems were identified within the middle Indus Fan using high resolution multibeam bathymetric data. Prominent morphological features within the survey block include the Raman Seamount and Laxmi Ridge. The origin of the newly discovered channels in the middle fan has been inferred using medium resolution satellite bathymetry data. Interpretation of new data shows that the highly sinuous deep sea channel systems also extend to the east of Laxmi Ridge, as well as to the west of Laxmi Ridge, as previously reported. A decrease in sinuosity southward can be attributed to the morphological constraints imposed by the elevated features. These findings have significance in determining the pathways for active sediment transport systems, as well as their source characterization. The geometry suggests a series of punctuated avulsion events leading to the present array of disconnected channels. Such channels have affected the Laxmi Basin since the Pliocene and are responsible for reworking older fan sediments, resulting in loss of the original erosional signature supplied from the river mouth. This implies that distal fan sediments have experienced significant signal shredding and may not represent the erosion and weathering conditions within the onshore basin at the time of sedimentation.

The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation.

PubMed

Campeão, Mariana E; Reis, Luciana; Leomil, Luciana; de Oliveira, Louisi; Otsuki, Koko; Gardinali, Piero; Pelz, Oliver; Valle, Rogerio; Thompson, Fabiano L; Thompson, Cristiane C

2017-01-01

One consequence of oil production is the possibility of unplanned accidental oil spills; therefore, it is important to evaluate the potential of indigenous microorganisms (both prokaryotes and eukaryotes) from different oceanic basins to degrade oil. The aim of this study was to characterize the microbial response during the biodegradation process of Brazilian crude oil, both with and without the addition of the dispersant Corexit 9500, using deep-sea water samples from the Amazon equatorial margin basins, Foz do Amazonas and Barreirinhas, in the dark and at low temperatures (4°C). We collected deep-sea samples in the field (about 2570 m below the sea surface), transported the samples back to the laboratory under controlled environmental conditions (5°C in the dark) and subsequently performed two laboratory biodegradation experiments that used metagenomics supported by classical microbiological methods and chemical analysis to elucidate both taxonomic and functional microbial diversity. We also analyzed several physical-chemical and biological parameters related to oil biodegradation. The concomitant depletion of dissolved oxygen levels, oil droplet density characteristic to oil biodegradation, and BTEX concentration with an increase in microbial counts revealed that oil can be degraded by the autochthonous deep-sea microbial communities. Indigenous bacteria (e.g., Alteromonadaceae, Colwelliaceae , and Alcanivoracaceae ), archaea (e.g., Halobacteriaceae, Desulfurococcaceae , and Methanobacteriaceae ), and eukaryotic microbes (e.g., Microsporidia, Ascomycota, and Basidiomycota) from the Amazonian margin deep-sea water were involved in biodegradation of Brazilian crude oil within less than 48-days in both treatments, with and without dispersant, possibly transforming oil into microbial biomass that may fuel the marine food web.

The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation

PubMed Central

Campeão, Mariana E.; Reis, Luciana; Leomil, Luciana; de Oliveira, Louisi; Otsuki, Koko; Gardinali, Piero; Pelz, Oliver; Valle, Rogerio; Thompson, Fabiano L.; Thompson, Cristiane C.

2017-01-01

One consequence of oil production is the possibility of unplanned accidental oil spills; therefore, it is important to evaluate the potential of indigenous microorganisms (both prokaryotes and eukaryotes) from different oceanic basins to degrade oil. The aim of this study was to characterize the microbial response during the biodegradation process of Brazilian crude oil, both with and without the addition of the dispersant Corexit 9500, using deep-sea water samples from the Amazon equatorial margin basins, Foz do Amazonas and Barreirinhas, in the dark and at low temperatures (4°C). We collected deep-sea samples in the field (about 2570 m below the sea surface), transported the samples back to the laboratory under controlled environmental conditions (5°C in the dark) and subsequently performed two laboratory biodegradation experiments that used metagenomics supported by classical microbiological methods and chemical analysis to elucidate both taxonomic and functional microbial diversity. We also analyzed several physical–chemical and biological parameters related to oil biodegradation. The concomitant depletion of dissolved oxygen levels, oil droplet density characteristic to oil biodegradation, and BTEX concentration with an increase in microbial counts revealed that oil can be degraded by the autochthonous deep-sea microbial communities. Indigenous bacteria (e.g., Alteromonadaceae, Colwelliaceae, and Alcanivoracaceae), archaea (e.g., Halobacteriaceae, Desulfurococcaceae, and Methanobacteriaceae), and eukaryotic microbes (e.g., Microsporidia, Ascomycota, and Basidiomycota) from the Amazonian margin deep-sea water were involved in biodegradation of Brazilian crude oil within less than 48-days in both treatments, with and without dispersant, possibly transforming oil into microbial biomass that may fuel the marine food web. PMID:28659874

How can we identify and communicate the ecological value of deep-sea ecosystem services?

PubMed

Jobstvogt, Niels; Townsend, Michael; Witte, Ursula; Hanley, Nick

2014-01-01

Submarine canyons are considered biodiversity hotspots which have been identified for their important roles in connecting the deep sea with shallower waters. To date, a huge gap exists between the high importance that scientists associate with deep-sea ecosystem services and the communication of this knowledge to decision makers and to the wider public, who remain largely ignorant of the importance of these services. The connectivity and complexity of marine ecosystems makes knowledge transfer very challenging, and new communication tools are necessary to increase understanding of ecological values beyond the science community. We show how the Ecosystem Principles Approach, a method that explains the importance of ocean processes via easily understandable ecological principles, might overcome this challenge for deep-sea ecosystem services. Scientists were asked to help develop a list of clear and concise ecosystem principles for the functioning of submarine canyons through a Delphi process to facilitate future transfers of ecological knowledge. These ecosystem principles describe ecosystem processes, link such processes to ecosystem services, and provide spatial and temporal information on the connectivity between deep and shallow waters. They also elucidate unique characteristics of submarine canyons. Our Ecosystem Principles Approach was successful in integrating ecological information into the ecosystem services assessment process. It therefore has a high potential to be the next step towards a wider implementation of ecological values in marine planning. We believe that successful communication of ecological knowledge is the key to a wider public support for ocean conservation, and that this endeavour has to be driven by scientists in their own interest as major deep-sea stakeholders.

How Can We Identify and Communicate the Ecological Value of Deep-Sea Ecosystem Services?

PubMed Central

Jobstvogt, Niels; Townsend, Michael; Witte, Ursula; Hanley, Nick

2014-01-01

Submarine canyons are considered biodiversity hotspots which have been identified for their important roles in connecting the deep sea with shallower waters. To date, a huge gap exists between the high importance that scientists associate with deep-sea ecosystem services and the communication of this knowledge to decision makers and to the wider public, who remain largely ignorant of the importance of these services. The connectivity and complexity of marine ecosystems makes knowledge transfer very challenging, and new communication tools are necessary to increase understanding of ecological values beyond the science community. We show how the Ecosystem Principles Approach, a method that explains the importance of ocean processes via easily understandable ecological principles, might overcome this challenge for deep-sea ecosystem services. Scientists were asked to help develop a list of clear and concise ecosystem principles for the functioning of submarine canyons through a Delphi process to facilitate future transfers of ecological knowledge. These ecosystem principles describe ecosystem processes, link such processes to ecosystem services, and provide spatial and temporal information on the connectivity between deep and shallow waters. They also elucidate unique characteristics of submarine canyons. Our Ecosystem Principles Approach was successful in integrating ecological information into the ecosystem services assessment process. It therefore has a high potential to be the next step towards a wider implementation of ecological values in marine planning. We believe that successful communication of ecological knowledge is the key to a wider public support for ocean conservation, and that this endeavour has to be driven by scientists in their own interest as major deep-sea stakeholders. PMID:25055119

Rapid scavenging of jellyfish carcasses reveals the importance of gelatinous material to deep-sea food webs.

PubMed

Sweetman, Andrew K; Smith, Craig R; Dale, Trine; Jones, Daniel O B

2014-12-07

Jellyfish blooms are common in many oceans, and anthropogenic changes appear to have increased their magnitude in some regions. Although mass falls of jellyfish carcasses have been observed recently at the deep seafloor, the dense necrophage aggregations and rapid consumption rates typical for vertebrate carrion have not been documented. This has led to a paradigm of limited energy transfer to higher trophic levels at jelly falls relative to vertebrate organic falls. We show from baited camera deployments in the Norwegian deep sea that dense aggregations of deep-sea scavengers (more than 1000 animals at peak densities) can rapidly form at jellyfish baits and consume entire jellyfish carcasses in 2.5 h. We also show that scavenging rates on jellyfish are not significantly different from fish carrion of similar mass, and reveal that scavenging communities typical for the NE Atlantic bathyal zone, including the Atlantic hagfish, galatheid crabs, decapod shrimp and lyssianasid amphipods, consume both types of carcasses. These rapid jellyfish carrion consumption rates suggest that the contribution of gelatinous material to organic fluxes may be seriously underestimated in some regions, because jelly falls may disappear much more rapidly than previously thought. Our results also demonstrate that the energy contained in gelatinous carrion can be efficiently incorporated into large numbers of deep-sea scavengers and food webs, lessening the expected impacts (e.g. smothering of the seafloor) of enhanced jellyfish production on deep-sea ecosystems and pelagic-benthic coupling. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

The mortality and morbidity of deep sea fishermen sailing from Grimsby in one year1

PubMed Central

Moore, S. R. W.

1969-01-01

Moore, S. R. W. (1969).Brit. J. industr. Med.,26, 25-46. The mortality and morbidity of deep sea fishermen sailing from Grimsby in one year. The injuries, illnesses, and deaths of Grimsby deep sea fishermen in the year 1963 have been studied using the trawler log-book as the basic source of information. Additional information has been obtained from other sources. The numbers of man-days sailed by Grimsby deep sea fishermen, by age and rating in 1963, have been ascertained. From these, incapacity rates for the measurement of morbidity due to injury and illness, and the mortality rate, have been calculated. There were 14 deaths, six due to accidental causes and eight to natural causes, giving a mortality rate of 5·7 per 1,000 for Grimsby deep sea fishermen in 1963. In a year when there was no foundering or loss of Grimsby trawlers, the fatal accident rate of Grimsby trawlermen was more than twice that of fishermen of the United Kingdom, four times the rate for miners, and 40 times that for the manufacturing industries. The most common injuries were, in order of incidence, contusions of varying degrees of severity, infected lesions, sprains and strains, lacerations, and fractures. More than half (56·3%) of the trawlermen were incapacitated by their injuries. The highest rates of incapacity were caused by fractures, contusions, and infected lesions. The upper limb, especially the hands and fingers, was most often affected, resulting most commonly in infected lesions. Third hands, mates, deck hands, deck trimmers, and deck learners had the highest incapacity rates due to injury. Third hands are especially at risk to injury. Most injuries and two deaths caused by casualties to boats occurred in fires aboard trawlers. The most common illnesses suffered by trawlermen were gastrointestinal, respiratory, and skin diseases. Illness caused incapacity in 68·8% of the trawlermen affected. The greatest incapacity was due to gastrointestinal, cardiac, psychiatric, and respiratory illness, and firemen, third-hands, and cooks had the highest rates of incapacity. Of the illnesses said to be peculiar to fishermen, Dogger Bank itch and erysipeloid did not affect Grimsby trawlermen. Unfit deep sea fishermen go to sea, even when so certified by a medical officer, thus possibly endangering themselves and other members of the crew. The injuries which give rise to the highest morbidity and mortality in deep sea fishermen are primarily due to accidental causes. The following measures are suggested to reduce the toll on deep sea fishermen. (1) The establishment of an occupational health service for trawlermen, with compulsory pre-employment and periodic examinations, would help to prevent unfit men going to sea and ensure that those sailing were of good health and not a liability to their fellows. The Medical Examination (Fishermen) Convention, 1959, of the International Labour Organization should be ratified by the United Kingdom. PMID:5775418

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment.

PubMed

Zhang, Bo; Zhang, Yan-Hong; Wang, Xin; Zhang, Hui-Xian; Lin, Qiang

2017-07-01

The deep sea is one of the most extensive ecosystems on earth. Organisms living there survive in an extremely harsh environment, and their mitochondrial energy metabolism might be a result of evolution. As one of the most important organelles, mitochondria generate energy through energy metabolism and play an important role in almost all biological activities. In this study, the mitogenome of a deep-sea sea anemone ( Bolocera sp.) was sequenced and characterized. Like other metazoans, it contained 13 energy pathway protein-coding genes and two ribosomal RNAs. However, it also exhibited some unique features: just two transfer RNA genes, two group I introns, two transposon-like noncanonical open reading frames (ORFs), and a control region-like (CR-like) element. All of the mitochondrial genes were coded by the same strand (the H-strand). The genetic order and orientation were identical to those of most sequenced actiniarians. Phylogenetic analyses showed that this species was closely related to Bolocera tuediae . Positive selection analysis showed that three residues (31 L and 42 N in ATP6 , 570 S in ND5 ) of Bolocera sp. were positively selected sites. By comparing these features with those of shallow sea anemone species, we deduced that these novel gene features may influence the activity of mitochondrial genes. This study may provide some clues regarding the adaptation of Bolocera sp. to the deep-sea environment.

The biodiversity of the deep Southern Ocean benthos.

PubMed

Brandt, A; De Broyer, C; De Mesel, I; Ellingsen, K E; Gooday, A J; Hilbig, B; Linse, K; Thomson, M R A; Tyler, P A

2007-01-29

Our knowledge of the biodiversity of the Southern Ocean (SO) deep benthos is scarce. In this review, we describe the general biodiversity patterns of meio-, macro- and megafaunal taxa, based on historical and recent expeditions, and against the background of the geological events and phylogenetic relationships that have influenced the biodiversity and evolution of the investigated taxa. The relationship of the fauna to environmental parameters, such as water depth, sediment type, food availability and carbonate solubility, as well as species interrelationships, probably have shaped present-day biodiversity patterns as much as evolution. However, different taxa exhibit different large-scale biodiversity and biogeographic patterns. Moreover, there is rarely any clear relationship of biodiversity pattern with depth, latitude or environmental parameters, such as sediment composition or grain size. Similarities and differences between the SO biodiversity and biodiversity of global oceans are outlined. The high percentage (often more than 90%) of new species in almost all taxa, as well as the high degree of endemism of many groups, may reflect undersampling of the area, and it is likely to decrease as more information is gathered about SO deep-sea biodiversity by future expeditions. Indeed, among certain taxa such as the Foraminifera, close links at the species level are already apparent between deep Weddell Sea faunas and those from similar depths in the North Atlantic and Arctic. With regard to the vertical zonation from the shelf edge into deep water, biodiversity patterns among some taxa in the SO might differ from those in other deep-sea areas, due to the deep Antarctic shelf and the evolution of eurybathy in many species, as well as to deep-water production that can fuel the SO deep sea with freshly produced organic matter derived not only from phytoplankton, but also from ice algae.

The biodiversity of the deep Southern Ocean benthos

PubMed Central

Brandt, A; De Broyer, C; De Mesel, I; Ellingsen, K.E; Gooday, A.J; Hilbig, B; Linse, K; Thomson, M.R.A; Tyler, P.A

2006-01-01

Our knowledge of the biodiversity of the Southern Ocean (SO) deep benthos is scarce. In this review, we describe the general biodiversity patterns of meio-, macro- and megafaunal taxa, based on historical and recent expeditions, and against the background of the geological events and phylogenetic relationships that have influenced the biodiversity and evolution of the investigated taxa. The relationship of the fauna to environmental parameters, such as water depth, sediment type, food availability and carbonate solubility, as well as species interrelationships, probably have shaped present-day biodiversity patterns as much as evolution. However, different taxa exhibit different large-scale biodiversity and biogeographic patterns. Moreover, there is rarely any clear relationship of biodiversity pattern with depth, latitude or environmental parameters, such as sediment composition or grain size. Similarities and differences between the SO biodiversity and biodiversity of global oceans are outlined. The high percentage (often more than 90%) of new species in almost all taxa, as well as the high degree of endemism of many groups, may reflect undersampling of the area, and it is likely to decrease as more information is gathered about SO deep-sea biodiversity by future expeditions. Indeed, among certain taxa such as the Foraminifera, close links at the species level are already apparent between deep Weddell Sea faunas and those from similar depths in the North Atlantic and Arctic. With regard to the vertical zonation from the shelf edge into deep water, biodiversity patterns among some taxa in the SO might differ from those in other deep-sea areas, due to the deep Antarctic shelf and the evolution of eurybathy in many species, as well as to deep-water production that can fuel the SO deep sea with freshly produced organic matter derived not only from phytoplankton, but also from ice algae. PMID:17405207

Low dissolved organic carbon input from fresh litter to deep mineral soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Froeberg, Mats J; Jardine, Philip M; Hanson, Paul J

2007-01-01

Dissolved organic carbon (DOC) leached from recent litter in the forest floor has been suggested to be an important source of C to the mineral soil of forest ecosystems. In order to determine the rate at which this flux of C occurs we have taken advantage of a local release of 14C at Oak Ridge National Laboratory Reservation, USA (latitude N 35 58'; longitude W 84 16'). Eight replicate 7x7 m plots were estab lished at four field sites on the reservation in an upland oak forest setting. Half of the plots were provided with 14C-enriched litter (∆14C ≈1000 ),more » and the other half with near-background litter (∆14C ≈220 ) over multiple years. Differences in the labeled leaf litter were used to quantify the movement of litter derived DOC through the soil profile. Soil solutions were collected over several years with tension lysimeters at 15 and 70 cm depth and measured for DOC concentration and 14C abundance. The net amount of DOC retained between 15 and 70 cm was 1.5-6 g m-2 y-1. There were significant effects of the litter additions on the 14C abundance in the DOC, but the net transport of 14C from the added litter was small. The difference in ∆14C between the treatments with enriched and near-background litter was only about 130 at both depths, which is small compared with the difference in Δ14C in the added litter. The primary source of DOC within the mineral soil must therefore have been either the Oe/Oa horizon or the organic matter in the mineral soil. Over a 2-year time frame, leaching of DOC from recent litter did not have a major impact on the C stock in the mineral soil below 15 cm in this ecosystem.« less

Microbial ecology of deep-water mid-Atlantic canyons

USGS Publications Warehouse

Kellogg, Christina A.

2011-01-01

The research described in this fact sheet will be conducted from 2012 to 2014 as part of the U.S. Geological Survey's DISCOVRE (DIversity, Systematics, and COnnectivity of Vulnerable Reef Ecosystems) Program. This integrated, multidisciplinary effort will be investigating a variety of topics related to unique and fragile deep-sea ecosystems from the microscopic level to the ecosystem level. One goal is to improve understanding, at the microbiological scale, of the benthic communities (including corals) that reside in and around mid-Atlantic canyon habitats and their associated environments. Specific objectives include identifying and characterizing the microbial associates of deep-sea corals, characterizing the microbial biofilms on hard substrates to better determine their role in engineering the ecosystem, and adding a microbial dimension to benthic community structure and function assessments by characterizing micro-eukaryotes, bacteria, and archaea in deep-sea sediments.

Three modes of interdecadal trends in sea surface temperature and sea surface height

NASA Astrophysics Data System (ADS)

Gnanadesikan, A.; Pradal, M.

2013-12-01

It might be thought that sea surface height and sea surface temperature would be tightly related. We show that this is not necessarily the case on a global scale. We analysed this relationship in a suite of coupled climate models run under 1860 forcing conditions. The models are low-resolution variants of the GFDL Earth System Model, reported in Galbraith et al. (J. Clim. 2011). 1. Correlated changes in global sea surface height and global sea surface temperature. This mode corresponds to opening and closing of convective chimneys in the Southern Ocean. As the Southern Ocean destratifies, sea ice formation is suppressed during the winter and more heat is taken up during the summer. This mode of variability is highly correlated with changes in the top of the atmosphere radiative budget and weakly correlated with changes in the deep ocean circulation. 2. Uncorrelated changes in global sea surface height and global sea surface temperature. This mode of variability is associated with interdecadal variabliity in tropical winds. Changes in the advective flux of heat to the surface ocean play a critical role in driving these changes, which also result in significant local changes in sea level. Changes sea ice over the Southern Ocean still result in changes in solar absorption, but these are now largely cancelled by changes in outgoing longwave radiation. 3. Anticorrelated changes in global sea surface height and global sea surface temperatures. By varying the lateral diffusion coefficient in the ocean model, we are able to enhance and suppress convection in the Southern and Northern Pacific Oceans. Increasing the lateral diffusion coefficients shifts the balance sources of deep water away from the warm salty deep water of the North Atlantic and towards cold fresh deep water from the other two regions. As a result, even though the planet as a whole warms, the deep ocean cools and sea level falls, with changes of order 30 cm over 500 years. The increase in solar absorption in polar regions is more than compensated by an increase in outgoing longwave radiation. Relationship between global SSH trend over a decade and (A) local SSH change over a decade (m/m). (B) Global SST change over a decade (m/K) (C) Portion of decadal SST change correlated with net radiation at the top of the atmosphere (m/K) (D) Portion of decadal SST change not correlated with net radiation at the top of the atmosphere.

Bioavailability of riverine dissolved organic matter in three Baltic Sea estuaries and the effect of catchment land use

NASA Astrophysics Data System (ADS)

Asmala, E.; Autio, R.; Kaartokallio, H.; Pitkänen, L.; Stedmon, C. A.; Thomas, D. N.

2013-11-01

The microbial degradation of dissolved organic carbon and nitrogen (DOC, DON) was studied in three Finnish boreal estuaries with contrasting land use patterns (Kiiminkijoki - natural forest and peatland; Kyrönjoki - agricultural; Karjaanjoki - mixed/urban). Bioassays of 12-18 d long durations were used in 3 seasons at in situ temperatures. Besides the bulk parameters, a suite of dissolved organic matter (DOM) quality parameters were also investigated, including colored DOM (CDOM), fluorescent DOM and the molecular weight of DOM. Bioavailable DOC and DON pools varied significantly between the estuaries, from 7.9 to 10.6% and from 5.5 to 21.9%, respectively. DOM originating from the catchment dominated by natural forests and peatlands (Kiiminkijoki) had the lowest DOC and DON degradation rates, as well as the lowest proportions of biodegradable DOC and DON. A greater proportion of agricultural land in the catchment increased the bioavailability of DON, but not the bioavailability of DOC (Kyrönjoki). Additionally, DOM quality varied significantly between the estuaries, and DOM originating from the agricultural Kyrönjoki catchment sustained higher DOC and DON degradation rates and higher bacterial growth efficiency (BGE) compared to those of the natural forest and peat dominated Kiiminkijoki catchment. The quality of DOM, indicated by differences in CDOM, fluorescent DOM and molecular weight, varied between estuaries with differing land use and was concluded to be major driver of BGE of these systems and thereafter to the microbial CO2 fluxes from the estuaries. The differences in BGE resulted in a 5-fold difference in the calculated daily bacterial CO2 emissions between the study's estuaries due to bacterial activity, ranging from 40 kg C d-1 in the Karjaanjoki estuary to 200 kg C d-1 in the Kyrönjoki estuary. Lower DOC:DON ratios, smaller molecular weight and higher CDOM absorption spectral slope values of DOM resulted in higher proportion of the initial DOC and DON being transferred to microbial growth and therefore to the pelagic food web. The pristine, peatland and forest-dominated Kiiminkijoki catchment had the lowest BGE, and therefore proportionally highest CO2 fluxes.

Deep-sea ostracods from the South Atlantic sector of the Southern ocean during the Last 370,000 years

USGS Publications Warehouse

Yasuhara, Moriaki; Cronin, T. M.; Hunt, G.; Hodell, D.A.

2009-01-01

We report changes of deep-sea ostracod fauna during the last 370,000 yr from the Ocean Drilling Program (ODP) Hole 704A in the South Atlantic sector of the Southern Ocean. The results show that faunal changes are coincident with glacial/interglacial-scale deep-water circulation changes, even though our dataset is relatively small and the waters are barren of ostracods until mid-MIS (Marine Isotope Stage) 5. Krithe and Poseidonamicus were dominant during the Holocene interglacial period and the latter part of MIS 5, when this site was under the influence of North Atlantic Deep Water (NADW). Conversely, Henryhowella and Legitimocythere were dominant during glacial periods, when this site was in the path of Circumpolar Deep Water (CPDW). Three new species (Aversovalva brandaoae, Poseidonamicus hisayoae, and Krithe mazziniae) are described herein. This is the first report of Quaternary glacial/interglacial scale deep-sea ostracod faunal changes in the Southern and South Atlantic Oceans, a key region for understanding Quaternary climate and deep-water circulation, although the paucity of Quaternary ostracods in this region necessitates further research. ?? 2009 The Paleontological Society.

Nematode assemblages in the deep-sea benthos of the Norwegian Sea

NASA Astrophysics Data System (ADS)

Jensen, Preben

1988-07-01

The deep-sea benthos of the Norwegian Sea contains 20-204 nematodes per 10 cm 2 down to 3 cm depth at seven stations sampled between 970 and 3294 m water depth. The majority of nematodes occur in the uppermost cm. Biomass varies from 3 to 73 μg C per 10 cm 2. Individual adult weight of the most dominant species differs by a factor of almost 1000, i.e. from 3-4 ng C to 3400 ng C; however, the majority of the nematodes is small-sized. Species diversity and evenness are high at all stations and each station harbours its specific fauna with little overlap between stations. Analysis of trophic group composition suggests that microbial feeding types (deposit and epistrate feeders) prevail in the deep-sea benthos; predators and scavengers are scarce. It is concluded that the nematode assemblage at each station consists of a mosaic of many microhabitats. The small nematode body weight probably results from limited food supply and/or poor food quality.

Draft Genome Sequence of Pseudomonas pachastrellae Strain CCUG 46540T, a Deep-Sea Bacterium.

PubMed

Gomila, Margarita; Mulet, Magdalena; Lalucat, Jorge; García-Valdés, Elena

2017-04-06

Pseudomonas pachastrellae strain CCUG 46540 T (KMM 330 T ) was isolated from a deep-sea sponge specimen collected in the Philippine Sea at a depth of 750 m. The draft genome has an estimated size of 4.0 Mb, exhibits a G+C content of 61.2 mol%, and is predicted to encode 3,592 proteins, including pathways for the degradation of aromatic compounds. Copyright © 2017 Gomila et al.

Draft Genome Sequence of Pseudomonas pachastrellae Strain CCUG 46540T, a Deep-Sea Bacterium

PubMed Central

2017-01-01

ABSTRACT Pseudomonas pachastrellae strain CCUG 46540T (KMM 330T) was isolated from a deep-sea sponge specimen collected in the Philippine Sea at a depth of 750 m. The draft genome has an estimated size of 4.0 Mb, exhibits a G+C content of 61.2 mol%, and is predicted to encode 3,592 proteins, including pathways for the degradation of aromatic compounds. PMID:28385850

Velocity and Attenuation Profiles in the Monterey Deep-Sea Fan

DTIC Science & Technology

1987-12-01

a. 11 o n i n and depth. Sol ’^ a 11 e i"i u a 11 o >) a i::> 1 n Ci sediment for each of the f i...i. n c t ion o f f r e q u e n c; y...estimate of sea floor depth was obtained from an oceano - graphic map of the Monterey fan (’Oceanographic Data of the Monterey Deep Sea Fan’, 1st

Deep sea habitats in the chemical warfare dumping areas of the Baltic Sea.

PubMed

Czub, Michał; Kotwicki, Lech; Lang, Thomas; Sanderson, Hans; Klusek, Zygmunt; Grabowski, Miłosz; Szubska, Marta; Jakacki, Jaromir; Andrzejewski, Jan; Rak, Daniel; Bełdowski, Jacek

2018-03-01

The Baltic Sea is a severely disturbed marine ecosystem that has previously been used as a dumping ground for Chemical Warfare Agents (CW). The presence of unexploded underwater ordnance is an additional risk factor for offshore activities and an environmental risk for the natural resources of the sea. In this paper, the focus is on descriptions of the marine habitat based on the observations arising from studies linked to the CHEMSEA, MODUM and DAIMON projects. Investigated areas of Bornholm, Gotland and Gdańsk Deeps are similarly affected by the Baltic Sea eutrophication, however, at depths greater than 70m several differences in local hydrological regimes and pore-water heavy metal concentrations between those basins were observed. During the lifespan of presented studies, we were able to observe the effects of Major Baltic Inflow, that started in December 2014, on local biota and their habitats, especially in the Bornholm Deep area. Reappearance of several meiofauna taxa and one macrofauna specimen was observed approximately one year after this phenomenon, however it's ecological effects already disappeared in March 2017. According to our findings and to the EUNIS Habitat Classification, the three reviewed areas should be characterized as Deep Sea Muddy Sands, while the presence of suspicious bomb-like objects both beneath and on top of the sediments confirms their CW dumpsite status. Copyright © 2017 Elsevier B.V. All rights reserved.

First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.

PubMed

Antunes, André; Alam, Intikhab; Simões, Marta Filipa; Daniels, Camille; Ferreira, Ari J S; Siam, Rania; El-Dorry, Hamza; Bajic, Vladimir B

2015-10-01

The deep-sea brines of the Red Sea include some of the most extreme and unique environments on Earth. They combine high salinities with increases in temperature, heavy metals, hydrostatic pressure, and anoxic conditions, creating unique settings for thriving populations of novel extremophiles. Despite a recent increase of studies focusing on these unusual biotopes, their viral communities remain unexplored. The current survey explores four metagenomic datasets obtained from different brine-seawater interface samples, focusing specifically on the diversity of their viral communities. Data analysis confirmed that the particle-attached viral communities present in the brine-seawater interfaces were diverse and generally dominated by Caudovirales, yet appearing distinct from sample to sample. With a level of caution, we report the unexpected finding of Phycodnaviridae, which infects algae and plants, and trace amounts of insect-infecting Iridoviridae. Results from Kebrit Deep revealed stratification in the viral communities present in the interface: the upper-interface was enriched with viruses associated with typical marine bacteria, while the lower-interface was enriched with haloviruses and halophages. These results provide first insights into the unexplored viral communities present in deep-sea brines of the Red Sea, representing one of the first steps for ongoing and future sampling efforts and studies. Copyright © 2015 The Authors. Production and hosting by Elsevier Ltd.. All rights reserved.