Improved Geologic Interpretation of Non-invasive Electrical Resistivity Imaging from In-situ Samples

NASA Astrophysics Data System (ADS)

Mucelli, A.; Aborn, L.; Jacob, R.; Malusis, M.; Evans, J.

2016-12-01

Non-invasive geophysical techniques are useful in characterizing the subsurface geology without disturbing the environment, however, the ability to interpret the subsurface is enhanced by invasive work. Since geologic materials have electrical resistivity values it allows for a geologic interpretation to be made based on variations of electrical resistivity measured by electrical resistivity imaging (ERI). This study focuses on the pre-characterization of the geologic subsurface from ERI collected adjacent to the Montandon Marsh, a wetland located near Lewisburg, PA within the West Branch of the Susquehanna River watershed. The previous invasive data, boreholes, indicate that the subsurface consists of limestone and shale bedrock overlain with sand and gravel deposits from glacial outwash and aeolian processes. The objective is to improve our understanding of the subsurface at this long-term hydrologic research site by using excavation results, specifically observed variations in geologic materials and electrical resistivity laboratory testing of subsurface samples. The pre-excavation ERI indicated that the shallow-most geologic material had a resistivity value of 100-500 ohm-m. In comparison, the laboratory testing indicated the shallow-most material had the same range of electrical resistivity values depending on saturation levels. The ERI also showed that there was an electrically conductive material, 7 to 70 ohm-m, that was interpreted to be clay and agreed with borehole data, however, the excavation revealed that at this depth range the geologic material varied from stratified clay to clay with cobbles to weathered residual clay. Excavation revealed that the subtle variations in the electrical conductive material corresponded well with the variations in the geologic material. We will use these results to reinterpret previously collected ERI data from the entire long-term research site.

In-Situ Contained And Of Volatile Soil Contaminants

DOEpatents

Varvel, Mark Darrell

2005-12-27

The invention relates to a novel approach to containing and removing toxic waste from a subsurface environment. More specifically the present invention relates to a system for containing and removing volatile toxic chemicals from a subsurface environment using differences in surface and subsurface pressures. The present embodiment generally comprises a deep well, a horizontal tube, at least one injection well, at least one extraction well and a means for containing the waste within the waste zone (in-situ barrier). During operation the deep well air at the bottom of well (which is at a high pressure relative to the land surface as well as relative to the air in the contaminated soil) flows upward through the deep well (or deep well tube). This stream of deep well air is directed into the horizontal tube, down through the injection tube(s) (injection well(s)) and into the contaminate plume where it enhances volatization and/or removal of the contaminants.

In-Situ Containment and Extraction of Volatile Soil Contaminants

DOEpatents

Varvel, Mark Darrell

2005-12-27

The invention relates to a novel approach to containing and removing toxic waste from a subsurface environment. More specifically the present invention relates to a system for containing and removing volatile toxic chemicals from a subsurface environment using differences in surface and subsurface pressures. The present embodiment generally comprises a deep well, a horizontal tube, at least one injection well, at least one extraction well and a means for containing the waste within the waste zone (in-situ barrier). During operation the deep well air at the bottom of well (which is at a high pressure relative to the land surface as well as relative to the air in the contaminated soil) flows upward through the deep well (or deep well tube). This stream of deep well air is directed into the horizontal tube, down through the injection tube(s) (injection well(s)) and into the contaminate plume where it enhances volatization and/or removal of the contaminants.

Ultrafiltration by a compacted clay membrane-II. Sodium ion exclusion at various ionic strengths

USGS Publications Warehouse

Hanshaw, B.B.; Coplen, T.B.

1973-01-01

Several recent laboratory studies and field investigations have indicated that shales and compacted clay minerals behave as semipermeable membranes. One of the properties of semipermeable membranes is to retard or prevent the passage of charged ionic species through the membrane pores while allowing relatively free movement of uncharged species. This phenomenon is termed salt filtering, reverse osmosis, or ultrafiltration. This paper shows how one can proceed from the ion exchange capacity of clay minerals and, by means of Donnan membrane equilibrium concept and the Teorell-Meyer-Siever theory, develop a theory to explain why and to what extent ultrafiltration occurs when solutions of known concentration are forced to flow through a clay membrane. Reasonable agreement between theory and laboratory results were found. The concentration of the ultrafiltrate was always greater than predicted because of uncertainty in values of some parameters in the equations. Ultrafiltration phenomena may be responsible for the formation of some subsurface brines and mineral deposits. The effect should also be taken into consideration in any proposal for subsurface waste emplacement in an environment containing large quantities of clay minerals. ?? 1973.

Surface clay formation during short-term warmer and wetter conditions on a largely cold ancient Mars

NASA Astrophysics Data System (ADS)

Bishop, Janice L.; Fairén, Alberto G.; Michalski, Joseph R.; Gago-Duport, Luis; Baker, Leslie L.; Velbel, Michael A.; Gross, Christoph; Rampe, Elizabeth B.

2018-03-01

The ancient rock record for Mars has long been at odds with climate modelling. The presence of valley networks, dendritic channels and deltas on ancient terrains points towards running water and fluvial erosion on early Mars1, but climate modelling indicates that long-term warm conditions were not sustainable2. Widespread phyllosilicates and other aqueous minerals on the Martian surface3-6 provide additional evidence that an early wet Martian climate resulted in surface weathering. Some of these phyllosilicates formed in subsurface crustal environments5, with no association with the Martian climate, while other phyllosilicate-rich outcrops exhibit layered morphologies and broad stratigraphies7 consistent with surface formation. Here, we develop a new geochemical model for early Mars to explain the formation of these clay-bearing rocks in warm and wet surface locations. We propose that sporadic, short-term warm and wet environments during a generally cold early Mars enabled phyllosilicate formation without requiring long-term warm and wet conditions. We conclude that Mg-rich clay-bearing rocks with lateral variations in mixed Fe/Mg smectite, chlorite, talc, serpentine and zeolite occurrences formed in subsurface hydrothermal environments, whereas dioctahedral (Al/Fe3+-rich) smectite and widespread vertical horizonation of Fe/Mg smectites, clay assemblages and sulphates formed in variable aqueous environments on the surface of Mars. Our model for aluminosilicate formation on Mars is consistent with the observed geological features, diversity of aqueous mineralogies in ancient surface rocks and state-of-the-art palaeoclimate scenarios.

Hydrology of two slopes in subarctic Yukon, Canada

NASA Astrophysics Data System (ADS)

Carey, Sean K.; Woo, Ming-Ko

1999-11-01

Two subarctic forested slopes in central Wolf Creek basin, Yukon, were studied in 1996-1997 to determine the seasonal pattern of the hydrologic processes. A south-facing slope has a dense aspen forest on silty soils with seasonal frost only and a north-facing slope has open stands of black spruce and an organic layer on top of clay sediments with permafrost. Snowmelt is advanced by approximately one month on the south-facing slope due to greater radiation receipt. Meltwater infiltrates its seasonally frozen soil with low ice content, recharging the soil moisture reservoir but yielding no lateral surface or subsurface flow. Summer evaporation depletes this recharged moisture and any additional rainfall input, at the expense of surface or subsurface flow. The north-facing slope with an ice rich substrate hinders deep percolation. Snow meltwater is impounded within the organic layer to produce surface runoff in rills and gullies, and subsurface flow along pipes and within the matrix of the organic soil. During the summer, most subsurface flows are confined to the organic layer which has hydraulic conductivities orders of magnitudes larger than the underlying boulder-clay. Evaporation on the north-facing slope declines as both the frost table and the water table descend in the summer. A water balance of the two slopes demonstrates that vertical processes of infiltration and evaporation dominate moisture exchanges on the south-facing slope, whereas the retardation of deep drainage by frost and by clayey soil on the permafrost slope promotes a strong lateral flow component, principally within the organic layer. These results have the important implication that permafrost slopes and organic horizons are the principal controls on streamflow generation in subarctic catchments.

Trace Element and Cu Isotopic Tracers of Subsurface Flow and Transport in Wastewater Irrigated Soils

NASA Astrophysics Data System (ADS)

Carte, J.; Fantle, M. S.

2017-12-01

An understanding of subsurface flow paths is critical for quantifying the fate of contaminants in wastewater irrigation systems. This study investigates the subsurface flow of wastewater by quantifying the distribution of trace contaminants in wastewater irrigated soils. Soil samples were collected from the upper 1m of two wetlands at Penn State University's wastewater irrigation site, at which all effluent from the University's wastewater treatment plant has been sprayed since 1983. Major and trace element and Cu isotopic composition were determined for these samples, in addition to wastewater effluent and bedrock samples. The upper 20 cm of each wetland shows an enrichment of Bi, Cd, Cr, Cu, Mo, Ni, Pb, and Zn concentrations relative to deep (>1m) soils at the site by a factor of 1.7-3.5. Each wetland also has a subsurface clay rich horizon with Bi, Cu, Li, Ni, Pb, and Zn concentrations enriched by a factor of 1.4 to 5 relative to deep soils. These subsurface horizons directly underlie intervals that could facilitate preferential effluent flow: a gravel layer in one wetland, and a silty loam with visible mottling, an indication of dynamic water saturation, in the other. Trace metal concentrations in other horizons from both wetlands fall in the range of the deep soils. Significant variability in Cu isotopic composition is present in soils from both wetlands, with δ65Cu values ranging from 0.74‰ to 5.09‰. Soil δ65Cu correlates well with Cu concentrations, with lighter δ65Cu associated with higher concentrations. The Cu isotopic composition of the zones of metal enrichment are comparable to the ostensible average wastewater effluent δ65Cu value (0.61‰), while other horizons have considerably heavier δ65Cu values. We hypothesize that wastewater is the source of the metal enrichments, as each of the enriched elements are present as contaminants in wastewater, and the enrichments are located in clay-rich horizons conducive to trace metal immobilization due to adsorption. This hypothesis will be further tested by modeling with the reactive transport code CrunchTope. This study provides evidence that trace element and isotopic composition of soils can be useful tracers of subsurface hydrologic pathways and elemental fate and transport.

The Limits of Life in the Deep Subsurface - Implications for the Origin of Life

NASA Astrophysics Data System (ADS)

Baross, John

2013-06-01

There are very few environments on Earth where life is absent. Microbial life has proliferated into habitats that span nearly every imaginable physico-chemical variable. Only the availability of liquid water and temperature are known to prevent the growth of organisms. The other extreme physical and chemical variables, such as pH, pressure, high concentrations of solutes, damaging radiation, and toxic metals, are life-prohibiting factors for most organisms but not for all. The deep subsurface environments span all of the extreme conditions encountered by life including habitat conditions not yet explored, such as those that combine high temperature, high and low pH and extreme pressures. Some of the ``extremophile'' microorganisms inhabiting the deep subsurface environments have been shown to be among the most ``ancient'' of extant life. Their genomes and physiologies have led to a broader understanding of the geological settings of early life, the most ancient energy pathways, and the importance of water/rock interactions and tectonics in the origin and early evolution of life. The case can now be made that deep subsurface environments contributed to life's origin and provided the habitat(s) for the earliest microbial communities. However, there is much more to be done to further our understanding on the role of moderate to high pressures and temperatures on the chemical and biochemical ``steps'' leading to life, and on the evolution and physiology of both ancient and present-day subsurface microbial communities.

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

PubMed Central

Sheik, Cody S.; Reese, Brandi Kiel; Twing, Katrina I.; Sylvan, Jason B.; Grim, Sharon L.; Schrenk, Matthew O.; Sogin, Mitchell L.; Colwell, Frederick S.

2018-01-01

Earth’s subsurface environment is one of the largest, yet least studied, biomes on Earth, and many questions remain regarding what microorganisms are indigenous to the subsurface. Through the activity of the Census of Deep Life (CoDL) and the Deep Carbon Observatory, an open access 16S ribosomal RNA gene sequence database from diverse subsurface environments has been compiled. However, due to low quantities of biomass in the deep subsurface, the potential for incorporation of contaminants from reagents used during sample collection, processing, and/or sequencing is high. Thus, to understand the ecology of subsurface microorganisms (i.e., the distribution, richness, or survival), it is necessary to minimize, identify, and remove contaminant sequences that will skew the relative abundances of all taxa in the sample. In this meta-analysis, we identify putative contaminants associated with the CoDL dataset, recommend best practices for removing contaminants from samples, and propose a series of best practices for subsurface microbiology sampling. The most abundant putative contaminant genera observed, independent of evenness across samples, were Propionibacterium, Aquabacterium, Ralstonia, and Acinetobacter. While the top five most frequently observed genera were Pseudomonas, Propionibacterium, Acinetobacter, Ralstonia, and Sphingomonas. The majority of the most frequently observed genera (high evenness) were associated with reagent or potential human contamination. Additionally, in DNA extraction blanks, we observed potential archaeal contaminants, including methanogens, which have not been discussed in previous contamination studies. Such contaminants would directly affect the interpretation of subsurface molecular studies, as methanogenesis is an important subsurface biogeochemical process. Utilizing previously identified contaminant genera, we found that ∼27% of the total dataset were identified as contaminant sequences that likely originate from DNA extraction and DNA cleanup methods. Thus, controls must be taken at every step of the collection and processing procedure when working with low biomass environments such as, but not limited to, portions of Earth’s deep subsurface. Taken together, we stress that the CoDL dataset is an incredible resource for the broader research community interested in subsurface life, and steps to remove contamination derived sequences must be taken prior to using this dataset. PMID:29780369

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life.

PubMed

Sheik, Cody S; Reese, Brandi Kiel; Twing, Katrina I; Sylvan, Jason B; Grim, Sharon L; Schrenk, Matthew O; Sogin, Mitchell L; Colwell, Frederick S

2018-01-01

Earth's subsurface environment is one of the largest, yet least studied, biomes on Earth, and many questions remain regarding what microorganisms are indigenous to the subsurface. Through the activity of the Census of Deep Life (CoDL) and the Deep Carbon Observatory, an open access 16S ribosomal RNA gene sequence database from diverse subsurface environments has been compiled. However, due to low quantities of biomass in the deep subsurface, the potential for incorporation of contaminants from reagents used during sample collection, processing, and/or sequencing is high. Thus, to understand the ecology of subsurface microorganisms (i.e., the distribution, richness, or survival), it is necessary to minimize, identify, and remove contaminant sequences that will skew the relative abundances of all taxa in the sample. In this meta-analysis, we identify putative contaminants associated with the CoDL dataset, recommend best practices for removing contaminants from samples, and propose a series of best practices for subsurface microbiology sampling. The most abundant putative contaminant genera observed, independent of evenness across samples, were Propionibacterium , Aquabacterium , Ralstonia , and Acinetobacter . While the top five most frequently observed genera were Pseudomonas , Propionibacterium , Acinetobacter , Ralstonia , and Sphingomonas . The majority of the most frequently observed genera (high evenness) were associated with reagent or potential human contamination. Additionally, in DNA extraction blanks, we observed potential archaeal contaminants, including methanogens, which have not been discussed in previous contamination studies. Such contaminants would directly affect the interpretation of subsurface molecular studies, as methanogenesis is an important subsurface biogeochemical process. Utilizing previously identified contaminant genera, we found that ∼27% of the total dataset were identified as contaminant sequences that likely originate from DNA extraction and DNA cleanup methods. Thus, controls must be taken at every step of the collection and processing procedure when working with low biomass environments such as, but not limited to, portions of Earth's deep subsurface. Taken together, we stress that the CoDL dataset is an incredible resource for the broader research community interested in subsurface life, and steps to remove contamination derived sequences must be taken prior to using this dataset.

Investigation of North Pond crustal fluids by poised potential methods

NASA Astrophysics Data System (ADS)

Jones, R. M.; Orcutt, B.

2017-12-01

Microbes are present in the deep subsurface but their rates of activity, potential metabolisms and roles in the environment are still largely unknown. The marine deep crustal subsurface accounts for approximately 2.3x1018 m2 of the earth's volume, making this environment potentially significant to earth processes despite low productivity inherent in resource limited conditions. This has implications for geochemical cycling and exploring limits of life, linking to the `follow the energy' approach for defining habitability on earth and further afield. Most resources for life in the marine deep crust originate from rock. One subset of lithotrophic interactions involves direct transfer between electron acceptors and donors embedded in minerals and microbes. In this investigation, poised potential methods such as chronoamperometry were used to investigate mineral-microbe electron transfer interactions in the context of North Pond, a Mid-Atlantic ridge site representative of cool, sediment-covered basalts that make up the majority of the deep marine subsurface. Electrodes were poised at potentials corresponding approximately to particular lithotrophic oxidation reactions to enrich for sub-sections of North Pond deep subsurface fluid communities that were associated with direct electron transfer at these potentials.

Pore characteristics and their emergent effect on water adsorption and transport in clays using small-angle neutron scattering with contrast variation

NASA Astrophysics Data System (ADS)

Ding, M.; Hartl, M.; Wang, Y.; Hjelm, R.

2013-12-01

In nuclear waste management, clays are canonical materials in the construction of engineered barriers. They are also naturally occurring reactive minerals which play an important role in retention and colloidal facilitated reactive transport in subsurface systems. Knowledge of total and accessible porosity in clays is crucial in determining fluids transport behavior in clays. It will provide fundamental insight on the performance efficiency of specific clays as a barrier material and their role in regulating radionuclide transport in subsurface environments. The aim of the present work is to experimentally investigate the change in pore characteristics of clays as function of moisture content, and to determine their pore character in relation to their water retention capacity. Recent developments in small-angle neutron scattering (SANS) techniques allow quantitative measurement of pore morphology and size distribution of various materials in their pristine state under various sample environments (exposure to solution, high temperature, and so on). Furthermore, due to dramatic different neutron scattering properties of hydrogen and deuterium, one can readily use contrast variation, which is the isotopic labeling with various ratios of H and D (e.g. mixture of H2O/D2O) to highlight or suppress features of the sample. This is particularly useful in the study of complex pore system such as clays. In this study, we have characterized the pore structures for a number of clays including clay minerals and field samples which are relevant to high-level waste systems under various sample environments (e.g., humidity, temperature and pressure) using SANS. Our results suggest that different clays show unique pore features under various sample environments. To distinguish between accessible/non-accessible pores and the nature of pore filling (e.g. the quantity of H2O adsorbed by clays, and the distribution of H2O in relation to pore character) to water, clays were exposed for various periods to a specific humidity (e.g., relative humidity: RH=100%, RH=75%). The humidity is controlled by using saturated aqueous solutions, consisting of specific H2O/D2O mixtures. Our results have shown distinct variations in water adsorption and moisture diffusivity among clays. Our results allow us to obtain on the pore scale porosity changes due to water movement in clays. As emergent transport property, nano- to micro-scale structural characterization is crucial in providing insights into pore-scale transport processes, which are pertinent to upscale continuum model development involving flow and transport at low water content, flow and phase behavior under confinement, and low-permeability media.

Modeling subsurface stormflow initiation in low-relief landscapes

NASA Astrophysics Data System (ADS)

Hopp, Luisa; Vaché, Kellie B.; Rhett Jackson, C.; McDonnell, Jeffrey J.

2015-04-01

Shallow lateral subsurface flow as a runoff generating mechanism at the hillslope scale has mostly been studied in steeper terrain with typical hillside angles of 10 - 45 degrees. These studies have shown that subsurface stormflow is often initiated at the interface between a permeable upper soil layer and a lower conductivity impeding layer, e.g. a B horizon or bedrock. Many studies have identified thresholds of event size and soil moisture states that need to be exceeded before subsurface stormflow is initiated. However, subsurface stormflow generation on low-relief hillslopes has been much less studied. Here we present a modeling study that investigates the initiation of subsurface stormflow on low-relief hillslopes in the Upper Coastal Plain of South Carolina, USA. Hillslopes in this region typically have slope angles of 2-5 degrees. Topsoils are sandy, underlain by a low-conductivity sandy clay loam Bt horizon. Subsurface stormflow has only been intercepted occasionally in a 120 m long trench, and often subsurface flow was not well correlated with stream signals, suggesting a disconnect between subsurface flow on the hillslopes and stream flow. We therefore used a hydrologic model to better understand which conditions promote the initiation of subsurface flow in this landscape, addressing following questions: Is there a threshold event size and soil moisture state for producing lateral subsurface flow? What role does the spatial pattern of depth to the impeding clay layer play for subsurface stormflow dynamics? We reproduced a section of a hillslope, for which high-resolution topographic data and depth to clay measurements were available, in the hydrologic model HYDRUS-3D. Soil hydraulic parameters were based on experimentally-derived data. The threshold analysis was first performed using hourly climate data records for 2009-2010 from the study site to drive the simulation. For this period also trench measurements of subsurface flow were available. In addition, we also ran a longer-term simulation, using daily climate data for a nine year period to include more variable climate conditions in the threshold analysis. The model captured the observed subsurface flow instances very well. The threshold analysis indicated that the occurrence of subsurface stormflow uncommon, with a large proportion of the water perching above the clay layer percolating vertically into the clay layer. Event sizes of approximately 70-80 mm were required for initiating subsurface stormflow. The hourly data from 2009-2010 was subsequently used to test if the actual spatial distribution of depth to clay is a major control for the occurrence and magnitude of lateral subsurface flow. Results suggest that in this low-relief landscape also a spatially uniform mean depth to clay reproduces well the hydrologic behavior.

Community dynamics of anaerobic bacteria in deep petroleum reservoirs

NASA Astrophysics Data System (ADS)

Hallmann, Christian; Schwark, Lorenz; Grice, Kliti

2008-09-01

The nature, activity and metabolism of microbes that inhabit the deep subsurface environment are a matter of ongoing debate. Primarily limited by temperature, little is known about secondary factors that restrict or enhance microbial activity or about the extent of a habitable environment deep below the surface. In particular, the degraders of chemically inert organic substrates remain elusive. Petroleum reservoirs can be regarded as natural bioreactors and are ideally suited for the study of microbial metabolism in the deep subsurface. Here we analyse series of oil samples that were biodegraded to different degrees. We find fatty acids after hydrolysis of purified crude oil fractions, indicating the presence of intact phospholipids and suggesting that indigenous bacteria inhabit petroleum reservoirs in sediment depths of up to 2,000m. A major change in bacterial community structure occurs after the removal of n-alkanes, indicating that more than one consortium is responsible for petroleum degradation. Our results suggest that further study of petroleum fluids will help understand bacterial metabolism and diversity in this habitat of the deep subsurface.

Detection and cultivation of indigenous microorganisms in Mesozoic claystone core samples from the Opalinus Clay Formation (Mont Terri Rock Laboratory)

NASA Astrophysics Data System (ADS)

Mauclaire, L.; McKenzie, J. A.; Schwyn, B.; Bossart, P.

Although microorganisms have been isolated from various deep-subsurface environments, the persistence of microbial activity in claystones buried to great depths and on geological time scales has been poorly studied. The presence of in-situ microbial life in the Opalinus Clay Formation (Mesozoic claystone, 170 million years old) at the Mont Terri Rock Laboratory, Canton Jura, Switzerland was investigated. Opalinus Clay is a host rock candidate for a radioactive waste repository. Particle tracer tests demonstrated the uncontaminated nature of the cored samples, showing their suitability for microbiological investigations. To determine whether microorganisms are a consistent and characteristic component of the Opalinus Clay Formation, two approaches were used: (i) the cultivation of indigenous micoorganisms focusing mainly on the cultivation of sulfate-reducing bacteria, and (ii) the direct detection of molecular biomarkers of bacteria. The goal of the first set of experiments was to assess the presence of cultivable microorganisms within the Opalinus Clay Formation. After few months of incubation, the number of cell ranged from 0.1 to 2 × 10 3 cells ml -1 media. The microorganisms were actively growing as confirmed by the observation of dividing cells, and detection of traces of sulfide. To avoid cultivation bias, quantification of molecular biomarkers (phospholipid fatty acids) was used to assess the presence of autochthonous microorganisms. These molecules are good indicators of the presence of living cells. The Opalinus Clay contained on average 64 ng of PLFA g -1 dry claystone. The detected microbial community comprises mainly Gram-negative anaerobic bacteria as indicated by the ratio of iso/anteiso phospholipids (about 2) and the detection of large amount of β-hydroxy substituted fatty acids. The PLFA composition reveals the presence of specific functional groups of microorganisms in particular sulfate-reducing bacteria ( Desulfovibrio, Desulfobulbus, and Desulfobacter). This study demonstrates that microorganisms are a characteristic component of the unperturbed Opalinus Clay Formation.

Understanding wetland sub-surface hydrology using geologic and isotopic signatures

NASA Astrophysics Data System (ADS)

Sikdar, P. K.; Sahu, P.

2009-07-01

This paper attempts to utilize hydrogeology and isotope composition of groundwater to understand the present hydrological processes prevalent in a freshwater wetland, source of wetland groundwater, surface water/groundwater interaction and mixing of groundwater of various depth zones in the aquifer. This study considers East Calcutta Wetlands (ECW) - a freshwater peri-urban inland wetland ecosystem located at the lower part of the deltaic alluvial plain of South Bengal Basin and east of Kolkata city. This wetland is well known over the world for its resource recovery systems, developed by local people through ages, using wastewater of the city. Geological investigations reveal that the sub-surface geology is completely blanketed by the Quaternary sediments comprising a succession of silty clay, sand of various grades and sand mixed with occasional gravels and thin intercalations of silty clay. At few places the top silty clay layer is absent due to scouring action of past channels. In these areas sand is present throughout the geological column and the areas are vulnerable to groundwater pollution. Groundwater mainly flows from east to west and is being over-extracted to the tune of 65×103 m3/day. δ18O and δD values of shallow and deep groundwater are similar indicating resemblance in hydrostratigraphy and climate of the recharge areas. Groundwater originates mainly from monsoonal rain with some evaporation prior to or during infiltration and partly from bottom of ponds, canals and infiltration of groundwater withdrawn for irrigation. Relatively high tritium content of the shallow groundwater indicates local recharge, while the deep groundwater with very low tritium is recharged mainly from distant areas. At places the deep aquifer has relatively high tritium, indicating mixing of groundwater of shallow and deep aquifers. Metals such as copper, lead, arsenic, cadmium, aluminium, nickel and chromium are also present in groundwater of various depths. Therefore, aquifers of wetland and surrounding urban areas which are heavily dependent on groundwater are vulnerable to pollution. In the area south of ECW isotope data indicates no interaction between shallow and deep aquifer and hence this area may be a better location to treat sewage water than within ECW. To reduce the threat of pollution in ECW's aquifer, surface water-groundwater interaction should be minimized by regulating tubewell operation time, introducing treated surface water supply system and artificial recharging of the aquifer.

Smectite Dehydration, Membrane Filtration, and Pore-Water Freshening in Deep Ultra-Low Permeability Formations: Deep Processes in the Nankai Accretionary Wedge

NASA Astrophysics Data System (ADS)

Brown, K. M.; Sample, J. C.; Even, E.; Poeppe, D.; Henry, P.; Tobin, H. J.; Saffer, D. M.; Hirose, T.; Toczko, S.; Maeda, L.

2014-12-01

We address the fundamental questions surrounding the nature of water and chemical transport processes deep within sedimentary basin and accretionary-wedge environments. Consolidation and permeability studies conducted to 165 MPa (~10km depth) indicate that ultra-tight clay formations (10-18 m2 to10-21 m2) can substantially modify the fluids migrating through then. Pore-water extractions conducted on smectite/illite rich core samples obtained from 1-3 km depths at IODP (NanTroSEIZE, Chikyu) deep-riser drilling Site C0002, at the elevated loads required to squeeze waters from such deeply buried sediment (stresses up to 100 MPa),resulted in anomalous patterns of sequential freshening with progressive loading. More accurate laboratory investigations (both incremental loading and Constant Rate of Strain test) revealed that such freshening initiates above 20 MPa and progresses with consolidation to become greater than 20% by effective normal load of 165 MPa. Log-log plots of stress vs. hydraulic conductivity reveal that trends remain linear to elevated stresses and total porosities as low at 14%. The implications are that stress induced smectite dehydration and/or membrane filtration effects cause remarkable changes in pore water chemistry with fluid migration through deep, tight, clay-rich formations. These changes should occur in addition to any thermally induced diagenetic and clay-dehydration effects on pore water chemistry. Work is progressing to evaluate the impact of clay composition and temperature to ascertain if purely illitic compositions show similar trends and if the mass fractionation of water and other isotopes also occurs. Such studies will ascertain if the presence of smectite is a prerequisite for freshening or if membrane filtration is a major process in earth systems containing common clay minerals. The results have major implications for interpretations of mass chemical balances, pore water profiles, and the hydrologic, geochemical, and stress state controls on deep system behavior in all deep accretionary wedge and basin environments where clays are abundant. This research used samples provided by the International Ocean Discovery Program (IODP).

On the edge of a deep biosphere: Real animals in extreme environments

NASA Astrophysics Data System (ADS)

Childress, James J.; Fisher, Charles F.; Felbeck, Horst; Girguis, Peter

This paper considers the possibility of animals living in a subsurface environment on the global mid-ocean ridge system. It considers the possible environments and looks at the possibilities of animal inhabitants of the subsurface biosphere based on adaptations of animals to other extreme habitats. We conclude that there are known bridging inhabitants of the subsurface biosphere, that part-time inhabitants are extremely likely, and that there could be full-time inhabitants if conditions are stable within the tolerance limits of metazoans for time periods of months.

Effect of chemical environment and rock composition on fracture mechanics properties of reservoir lithologies in context of CO2 sequestration

NASA Astrophysics Data System (ADS)

Major, J. R.; Eichhubl, P.; Callahan, O. A.

2015-12-01

The coupled chemical and mechanical response of reservoir and seal rocks to injection of CO2 have major implications on the short and long term security of sequestered carbon. Many current numerical models evaluating behavior of reservoirs and seals during and after CO2 injection in the subsurface consider chemistry and mechanics separately and use only simple mechanical stability criteria while ignoring time-dependent failure parameters. CO2 injection irreversibly alters the subsurface chemical environment which can then affect geomechanical properties on a range of time scales by altering rock mineralogy and cements through dissolution, remobilization, and precipitation. It has also been documented that geomechanical parameters such as fracture toughness (KIC) and subcritical index (SCI) are sensitive to chemical environment. Double torsion fracture mechanics testing of reservoir lithologies under controlled environmental conditions relevant to CO2 sequestration show that chemical environment can measurably affect KIC and SCI. This coupled chemical-mechanical behavior is also influenced by rock composition, grains, amount and types of cement, and fabric. Fracture mechanics testing of the Aztec Sandstone, a largely silica-cemented, subarkose sandstone demonstrate it is less sensitive to chemical environment than Entrada Sandstone, a silty, clay-rich sandstone. The presence of de-ionized water lowers KIC by approximately 20% and SCI 30% in the Aztec Sandstone relative to tests performed in air, whereas the Entrada Sandstone shows reductions on the order of 70% and 90%, respectively. These results indicate that rock composition influences the chemical-mechanical response to deformation, and that the relative chemical reactivity of target reservoirs should be recognized in context of CO2 sequestration. In general, inert grains and cements such as quartz will be less sensitive to the changing subsurface environment than carbonates and clays.

Molecular Phylogenetic Analysis of Archaeal Intron-Containing Genes Coding for rRNA Obtained from a Deep-Subsurface Geothermal Water Pool

PubMed Central

Takai, Ken; Horikoshi, Koki

1999-01-01

Molecular phylogenetic analysis of a naturally occurring microbial community in a deep-subsurface geothermal environment indicated that the phylogenetic diversity of the microbial population in the environment was extremely limited and that only hyperthermophilic archaeal members closely related to Pyrobaculum were present. All archaeal ribosomal DNA sequences contained intron-like sequences, some of which had open reading frames with repeated homing-endonuclease motifs. The sequence similarity analysis and the phylogenetic analysis of these homing endonucleases suggested the possible phylogenetic relationship among archaeal rRNA-encoded homing endonucleases. PMID:10584021

Unraveling the Diversity of Early Aqueous Environments and Climate on Mars Through the Phyllosilicate Record

NASA Technical Reports Server (NTRS)

Bishop, J. L.; Baker, L. L.; Fairén, A. G.; Gross, C.; Velbel, M. A.; Rampe, E. B.; Michalski, J. R.

2017-01-01

Were Martian phyllosilicates formed on the surface or subsurface? Was early Mars warm or cold? How long was liquid water present on the surface of Mars? These are some of the many open questions about our neighboring planet. We propose that the mineralogy of the clay-bearing outcrops on Mars can help address these questions. Abundant phyllosilicates and aqueous minerals are observed nearly everywhere we can see the ancient rocks on Mars. Most bountiful among these is Fe/Mg-smectite. In this study we evaluate the nature and stratigraphy of clay outcrops observed on Mars and the presence of mixtures of other clays or other minerals with the ubiquitous Fe/Mg-smectite.

Microbiome composition and geochemical characteristics of deep subsurface high-pressure environment, Pyhäsalmi mine Finland

PubMed Central

Miettinen, Hanna; Kietäväinen, Riikka; Sohlberg, Elina; Numminen, Mikko; Ahonen, Lasse; Itävaara, Merja

2015-01-01

Pyhäsalmi mine in central Finland provides an excellent opportunity to study microbial and geochemical processes in a deep subsurface crystalline rock environment through near-vertical drill holes that reach to a depth of more than two kilometers below the surface. However, microbial sampling was challenging in this high-pressure environment. Nucleic acid yields obtained were extremely low when compared to the cell counts detected (1.4 × 104 cells mL−1) in water. The water for nucleic acid analysis went through high decompression (60–130 bar) during sampling, whereas water samples for detection of cell counts by microscopy could be collected with slow decompression. No clear cells could be identified in water that went through high decompression. The high-pressure decompression may have damaged part of the cells and the nucleic acids escaped through the filter. The microbial diversity was analyzed from two drill holes by pyrosequencing amplicons of the bacterial and archaeal 16S rRNA genes and from the fungal ITS regions from both DNA and RNA fractions. The identified prokaryotic diversity was low, dominated by Firmicute, Beta- and Gammaproteobacteria species that are common in deep subsurface environments. The archaeal diversity consisted mainly of Methanobacteriales. Ascomycota dominated the fungal diversity and fungi were discovered to be active and to produce ribosomes in the deep oligotrophic biosphere. The deep fluids from the Pyhäsalmi mine shared several features with other deep Precambrian continental subsurface environments including saline, Ca-dominated water and stable isotope compositions positioning left from the meteoric water line. The dissolved gas phase was dominated by nitrogen but the gas composition clearly differed from that of atmospheric air. Despite carbon-poor conditions indicated by the lack of carbon-rich fracture fillings and only minor amounts of dissolved carbon detected in formation waters, some methane was found in the drill holes. No dramatic differences in gas compositions were observed between different gas sampling methods tested. For simple characterization of gas composition the most convenient way to collect samples is from free flowing fluid. However, compared to a pressurized method a relative decrease in the least soluble gases may appear. PMID:26579109

Linking Metabolism, Elemental Cycles, and Environmental Conditions in the Deep Biosphere: Growth of a Model Extremophile, Archaeoglobus fulgidus, Under High-Pressure Conditions

NASA Astrophysics Data System (ADS)

Oliver, G. C. M.; Cario, A.; Rogers, K. L.

2015-12-01

A majority of Earth's biosphere is hosted in subsurface environments where global-scale biogeochemical and energy cycles are driven by diverse microbial communities that operate on and are influenced by micro-scale environmental variables. While the subsurface hosts a variety of geochemical and geothermal conditions, elevated pressures are common to all subsurface ecosystems. Understanding how microbes adapt to and thrive in high-pressure environments is essential to linking microbial subsurface processes with global-scale cycles. Here we are using a model extremophile, Archaeoglobus fulgidus, to determine how elevated pressures affect the growth, metabolism, and physiology of subsurface microorganisms. A. fulgidus cycles carbon and sulfur via heterotrophic and autotrophic sulfate reduction in various high temperature and high-pressure niches including shallow marine vents, deep-sea hydrothermal vents, and deep oil reservoirs. Here we report the results of A. fulgidus growth experiments at optimum temperature, 83°C, and pressures up to 600 bars. Exponential growth was observed over the entire pressure range, though growth rates were diminished at 500 and 600 bars compared to ambient pressure experimental controls. At pressures up to 400 bars, cell density yields and growth rates were at least as high as ambient pressure controls. Elevated pressures and extended incubation times stimulated cell flocculation, a common stress response in this strain, and cellular morphology was affected at pressures exceeding 400 bars. These results suggest that A. fulgidus continues carbon, sulfur and energy cycling unaffected by elevated pressures up to 400 bars, representing a variety of subsurface environments. The ability of subsurface organisms to drive biogeochemical cycles at elevated pressures is a critical link between the surface and subsurface biospheres and understanding how species-scale processes operate under these conditions is a vital part of global-scale biogeochemical models.

Selective phylogenetic analysis targeting 16S rRNA genes of hyperthermophilic archaea in the deep-subsurface hot biosphere.

PubMed

Kimura, Hiroyuki; Ishibashi, Jun-Ichiro; Masuda, Harue; Kato, Kenji; Hanada, Satoshi

2007-04-01

International drilling projects for the study of microbial communities in the deep-subsurface hot biosphere have been expanded. Core samples obtained by deep drilling are commonly contaminated with mesophilic microorganisms in the drilling fluid, making it difficult to examine the microbial community by 16S rRNA gene clone library analysis. To eliminate mesophilic organism contamination, we previously developed a new method (selective phylogenetic analysis [SePA]) based on the strong correlation between the guanine-plus-cytosine (G+C) contents of the 16S rRNA genes and the optimal growth temperatures of prokaryotes, and we verified the method's effectiveness (H. Kimura, M. Sugihara, K. Kato, and S. Hanada, Appl. Environ. Microbiol. 72:21-27, 2006). In the present study we ascertained SePA's ability to eliminate contamination by archaeal rRNA genes, using deep-sea hydrothermal fluid (117 degrees C) and surface seawater (29.9 degrees C) as substitutes for deep-subsurface geothermal samples and drilling fluid, respectively. Archaeal 16S rRNA gene fragments, PCR amplified from the surface seawater, were denatured at 82 degrees C and completely digested with exonuclease I (Exo I), while gene fragments from the deep-sea hydrothermal fluid remained intact after denaturation at 84 degrees C because of their high G+C contents. An examination using mixtures of DNAs from the two environmental samples showed that denaturation at 84 degrees C and digestion with Exo I completely eliminated archaeal 16S rRNA genes from the surface seawater. Our method was quite useful for culture-independent community analysis of hyperthermophilic archaea in core samples recovered from deep-subsurface geothermal environments.

Geomicrobiology and Metagenomics of Terrestrial Deep Subsurface Microbiomes.

PubMed

Itävaara, M; Salavirta, H; Marjamaa, K; Ruskeeniemi, T

2016-01-01

Fractures in the deep subsurface of Earth's crust are inhabited by diverse microbial communities that participate in biogeochemical cycles of the Earth. Life on Earth, which arose c. 3.5-4.0 billion years ago, reaches down at least 5 km in the crust. Deep mines, caves, and boreholes have provided scientists with opportunities to sample deep subsurface microbiomes and to obtain information on the species diversity and functions. A wide variety of bacteria, archaea, eukaryotes, and viruses are now known to reside in the crust, but their functions are still largely unknown. The crust at different depths has varying geological composition and hosts endemic microbiomes accordingly. The diversity is driven by geological formations and gases evolving from deeper depths. Cooperation among different species is still mostly unexplored, but viruses are known to restrict density of bacterial and archaeal populations. Due to the complex growth requirements of the deep subsurface microbiomes, the new knowledge about their diversity and functions is mostly obtained by molecular methods, eg, meta'omics'. Geomicrobiology is a multidisciplinary research area combining disciplines from geology, mineralogy, geochemistry, and microbiology. Geomicrobiology is concerned with the interaction of microorganisms and geological processes. At the surface of mineralogical or rock surfaces, geomicrobial processes occur mainly under aerobic conditions. In the deep subsurface, however, the environmental conditions are reducing and anaerobic. The present chapter describes the world of microbiomes in deep terrestrial geological environments as well as metagenomic and metatranscriptomic methods suitable for studies of these enigmatic communities. Copyright © 2016 Elsevier Inc. All rights reserved.

Reactive Fe(II) layers in deep-sea sediments

NASA Astrophysics Data System (ADS)

König, Iris; Haeckel, Matthias; Drodt, Matthias; Suess, Erwin; Trautwein, Alfred X.

1999-05-01

The percentage of the structural Fe(II) in clay minerals that is readily oxidized to Fe(III) upon contact with atmospheric oxygen was determined across the downcore tan-green color change in Peru Basin sediments. This latent fraction of reactive Fe(II) was only found in the green strata, where it proved to be large enough to constitute a deep reaction layer with respect to the pore water O 2 and NO 3-. Large variations were detected in the proportion of the reactive Fe(II) concentration to the organic matter content along core profiles. Hence, the commonly observed tan-green color change in marine sediments marks the top of a reactive Fe(II) layer, which may represent the major barrier to the movement of oxidation fronts in pelagic subsurface sediments. This is also demonstrated by numerical model simulations. The findings imply that geochemical barriers to pore water oxidation fronts form diagenetically in the sea floor wherever the stage of iron reduction is reached, provided that the sediments contain a significant amount of structural iron in clay minerals.

Microbial redox processes in deep subsurface environments and the potential application of (per)chlorate in oil reservoirs

PubMed Central

Liebensteiner, Martin G.; Tsesmetzis, Nicolas; Stams, Alfons J. M.; Lomans, Bartholomeus P.

2014-01-01

The ability of microorganisms to thrive under oxygen-free conditions in subsurface environments relies on the enzymatic reduction of oxidized elements, such as sulfate, ferric iron, or CO2, coupled to the oxidation of inorganic or organic compounds. A broad phylogenetic and functional diversity of microorganisms from subsurface environments has been described using isolation-based and advanced molecular ecological techniques. The physiological groups reviewed here comprise iron-, manganese-, and nitrate-reducing microorganisms. In the context of recent findings also the potential of chlorate and perchlorate [jointly termed (per)chlorate] reduction in oil reservoirs will be discussed. Special attention is given to elevated temperatures that are predominant in the deep subsurface. Microbial reduction of (per)chlorate is a thermodynamically favorable redox process, also at high temperature. However, knowledge about (per)chlorate reduction at elevated temperatures is still scarce and restricted to members of the Firmicutes and the archaeon Archaeoglobus fulgidus. By analyzing the diversity and phylogenetic distribution of functional genes in (meta)genome databases and combining this knowledge with extrapolations to earlier-made physiological observations we speculate on the potential of (per)chlorate reduction in the subsurface and more precisely oil fields. In addition, the application of (per)chlorate for bioremediation, souring control, and microbial enhanced oil recovery are addressed. PMID:25225493

Cultivation Of Deep Subsurface Microbial Communities

NASA Astrophysics Data System (ADS)

Obrzut, Natalia; Casar, Caitlin; Osburn, Magdalena R.

2018-01-01

The potential habitability of surface environments on other planets in our solar system is limited by exposure to extreme radiation and desiccation. In contrast, subsurface environments may offer protection from these stressors and are potential reservoirs for liquid water and energy that support microbial life (Michalski et al., 2013) and are thus of interest to the astrobiology community. The samples used in this project were extracted from the Deep Mine Microbial Observatory (DeMMO) in the former Homestake Mine at depths of 800 to 2000 feet underground (Osburn et al., 2014). Phylogenetic data from these sites indicates the lack of cultured representatives within the community. We used geochemical data to guide media design to cultivate and isolate organisms from the DeMMO communities. Media used for cultivation varied from heterotrophic with oxygen, nitrate or sulfate to autotrophic media with ammonia or ferrous iron. Environmental fluid was used as inoculum in batch cultivation and strains were isolated via serial transfers or dilution to extinction. These methods resulted in isolating aerobic heterotrophs, nitrate reducers, sulfate reducers, ammonia oxidizers, and ferric iron reducers. DNA sequencing of these strains is underway to confirm which species they belong to. This project is part of the NASA Astrobiology Institute Life Underground initiative to detect and characterize subsurface microbial life; by characterizing the intraterrestrials, the life living deep within Earth’s crust, we aim to understand the controls on how and where life survives in subsurface settings. Cultivation of terrestrial deep subsurface microbes will provide insight into the survival mechanisms of intraterrestrials guiding the search for these life forms on other planets.

Delving into the Deep Biosphere

NASA Astrophysics Data System (ADS)

Grim, S. L.; Sogin, M. L.; Boetius, A.; Briggs, B. R.; Brazelton, W. J.; D'Hondt, S. L.; Edwards, K. J.; Fisk, M. R.; Gaidos, E.; Gralnick, J.; Hinrichs, K.; Lazar, C.; Lavalleur, H.; Lever, M. A.; Marteinsson, V.; Moser, D. P.; Orcutt, B.; Pedersen, K.; Popa, R.; Ramette, A.; Schrenk, M. O.; Sylvan, J. B.; Smith, A. R.; Teske, A.; Walsh, E. A.; Colwell, F. S.

2013-12-01

The Census of Deep Life organized an international survey of microbial community diversity in terrestrial and marine deep subsurface environments. Habitats included subsurface continental fractured rock aquifers, volcanic and metamorphic subseafloor sedimentary units from the open ocean, subsurface oxic and anoxic sediments and underlying basaltic oceanic crust, and their overlying water columns. Our survey employed high-throughput pyrosequencing of the hypervariable V4-V6 16S rRNA gene of bacteria and archaea. We detected 1292 bacterial genera representing 40 phyla, and 99 archaeal genera from 30 phyla. Of these, a core group of thirteen bacterial genera occurred in every environment. A genus of the South African Goldmine Group (Euryarchaeota) was always present whenever archaea were detected. Members of the rare biosphere in one system often represented highly abundant taxa in other environments. Dispersal could account for this observation but mechanisms of transport remain elusive. Ralstonia (Betaproteobacteria) represented highly abundant taxa in marine communities and terrestrial rock, but generally low abundance organisms in groundwater. Some of these taxa could represent sample contamination, and their extensive distribution in several systems requires further assessment. An unknown Sphingobacteriales (Bacteroidetes) genus, Stenotrophomonas (Gammaproteobacteria), Acidovorax and Aquabacterium (both Betaproteobacteria), a Chlorobiales genus, and a TM7 genus were in the core group as well but more prevalent in terrestrial environments. Similarly, Bacillus (Firmicutes), a new cyanobacterial genus, Bradyrhizobium and Sphingomonas (both Alphaproteobacteria), a novel Acidobacteriaceae genus, and Variovorax (Betaproteobacteria) frequently occurred in marine systems but represented low abundance taxa in other environments. Communities tended to cluster by biome and material, and many genera were unique to systems. For example, certain Rhizobiales (Alphaproteobacteria) only occurred in groundwater, and select Firmicutes and actinobacterial taxa were specific to rock environments. We continue to investigate the ecological and physiological context of these organisms. By combining deep sequencing of microbial communities and geochemical and physical evaluations of their environments, we bring to light the diversity and scope of the deep biosphere and insight into the factors that determine the nature of these communities.

The deep, hot biosphere: Twenty-five years of retrospection.

PubMed

Colman, Daniel R; Poudel, Saroj; Stamps, Blake W; Boyd, Eric S; Spear, John R

2017-07-03

Twenty-five years ago this month, Thomas Gold published a seminal manuscript suggesting the presence of a "deep, hot biosphere" in the Earth's crust. Since this publication, a considerable amount of attention has been given to the study of deep biospheres, their role in geochemical cycles, and their potential to inform on the origin of life and its potential outside of Earth. Overwhelming evidence now supports the presence of a deep biosphere ubiquitously distributed on Earth in both terrestrial and marine settings. Furthermore, it has become apparent that much of this life is dependent on lithogenically sourced high-energy compounds to sustain productivity. A vast diversity of uncultivated microorganisms has been detected in subsurface environments, and we show that H 2 , CH 4 , and CO feature prominently in many of their predicted metabolisms. Despite 25 years of intense study, key questions remain on life in the deep subsurface, including whether it is endemic and the extent of its involvement in the anaerobic formation and degradation of hydrocarbons. Emergent data from cultivation and next-generation sequencing approaches continue to provide promising new hints to answer these questions. As Gold suggested, and as has become increasingly evident, to better understand the subsurface is critical to further understanding the Earth, life, the evolution of life, and the potential for life elsewhere. To this end, we suggest the need to develop a robust network of interdisciplinary scientists and accessible field sites for long-term monitoring of the Earth's subsurface in the form of a deep subsurface microbiome initiative.

Is the genetic landscape of the deep subsurface biosphere affected by viruses?

PubMed

Anderson, Rika E; Brazelton, William J; Baross, John A

2011-01-01

Viruses are powerful manipulators of microbial diversity, biogeochemistry, and evolution in the marine environment. Viruses can directly influence the genetic capabilities and the fitness of their hosts through the use of fitness factors and through horizontal gene transfer. However, the impact of viruses on microbial ecology and evolution is often overlooked in studies of the deep subsurface biosphere. Subsurface habitats connected to hydrothermal vent systems are characterized by constant fluid flux, dynamic environmental variability, and high microbial diversity. In such conditions, high adaptability would be an evolutionary asset, and the potential for frequent host-virus interactions would be high, increasing the likelihood that cellular hosts could acquire novel functions. Here, we review evidence supporting this hypothesis, including data indicating that microbial communities in subsurface hydrothermal fluids are exposed to a high rate of viral infection, as well as viral metagenomic data suggesting that the vent viral assemblage is particularly enriched in genes that facilitate horizontal gene transfer and host adaptability. Therefore, viruses are likely to play a crucial role in facilitating adaptability to the extreme conditions of these regions of the deep subsurface biosphere. We also discuss how these results might apply to other regions of the deep subsurface, where the nature of virus-host interactions would be altered, but possibly no less important, compared to more energetic hydrothermal systems.

Is the Genetic Landscape of the Deep Subsurface Biosphere Affected by Viruses?

PubMed Central

Anderson, Rika E.; Brazelton, William J.; Baross, John A.

2011-01-01

Viruses are powerful manipulators of microbial diversity, biogeochemistry, and evolution in the marine environment. Viruses can directly influence the genetic capabilities and the fitness of their hosts through the use of fitness factors and through horizontal gene transfer. However, the impact of viruses on microbial ecology and evolution is often overlooked in studies of the deep subsurface biosphere. Subsurface habitats connected to hydrothermal vent systems are characterized by constant fluid flux, dynamic environmental variability, and high microbial diversity. In such conditions, high adaptability would be an evolutionary asset, and the potential for frequent host–virus interactions would be high, increasing the likelihood that cellular hosts could acquire novel functions. Here, we review evidence supporting this hypothesis, including data indicating that microbial communities in subsurface hydrothermal fluids are exposed to a high rate of viral infection, as well as viral metagenomic data suggesting that the vent viral assemblage is particularly enriched in genes that facilitate horizontal gene transfer and host adaptability. Therefore, viruses are likely to play a crucial role in facilitating adaptability to the extreme conditions of these regions of the deep subsurface biosphere. We also discuss how these results might apply to other regions of the deep subsurface, where the nature of virus–host interactions would be altered, but possibly no less important, compared to more energetic hydrothermal systems. PMID:22084639

Hydro-environmental changes and their influence on the subsurface environment in the context of urban development.

PubMed

Yoshikoshi, Akihisa; Adachi, Itsu; Taniguchi, Tomomasa; Kagawa, Yuichi; Kato, Masahiro; Yamashita, Akio; Todokoro, Taiko; Taniguchi, Makoto

2009-04-15

The relationship between urban development and hydro-environmental change, particularly with regard to the subsurface environment is examined for three coastal cities affected by Asian monsoons (Tokyo and Osaka in Japan, and Bangkok in Thailand). Major differences in subsurface changes among these cities are closely related to city size, urban structure, and the timing, stage and extent of urbanization as well as the natural environment. The work shows that the urban development has not affected the Bangkok subsurface hydro-environment in the same way it has in Tokyo and Osaka. Three reasons for the difference account for this, (1) Bangkok's abundant annual rainfall, (2) Bangkok has the smallest ratio of impervious pavement surface area, meaning that surface water can more easily infiltrate underground., (3) the degree and extent of urbanization. Bangkok's subsurface hydro-environment has not been heavily affected because underground development has not yet reached deep subterranean areas. By researching yet more cities, at different stages of urbanization to that of Tokyo, Osaka and Bangkok, we plan to quantitatively examine urbanization and its influence on subsurface hydro-environments. This research will help limit damage to developing cities that are not yet experiencing subsurface failures but which are expected to confront these problems in the future.

Organic and Inorganic Carbon in the Rio Tinto (Spain) Deep Subsurface System: a Possible Model for Subsurface Carbon and Lithoautotrophs on Mars.

NASA Astrophysics Data System (ADS)

Bonaccorsi, R.; Stoker, C. R.; MARTE Science Team

2007-12-01

The subsurface is the key environment for searching for life on planets lacking surface life. Subsurface ecosystems are of great relevance to astrobiology including the search for past/present life on Mars. Conditions on the Martian surface do not support biological activity but the subsurface might preserve organics and host subsurface life [1]. A key requirement for the analysis of subsurface samples on Mars is the ability to characterize organic vs. inorganic carbon pools. This information is needed to determine if the sample contains organic material of biological origin and/ or to establish if pools of inorganic carbon can support subsurface biospheres. The Mars Analog Rio Tinto Experiment (MARTE) performed deep drilling of cores i.e., down to 165-m depth, in a volcanically-hosted-massive-sulfide deposit at Rio Tinto, Spain, which is considered an important analog of the Sinus Meridiani site on Mars. Results from MARTE suggest the existence of a relatively complex subsurface life including aerobic and anaerobic chemoautotrophs, and strict anaerobic methanogens sustained by Fe and S minerals in anoxic conditions, which is an ideal model analog for a deep subsurface Martian environment. We report here on the distribution of organic (C-org: 0.01-0.3Wt% and inorganic carbon (IC = 0.01-7.0 Wt%) in a subsurface rock system including weathered/oxidized i.e., gossan, and unaltered pyrite stockwork. Cores were analyzed from 3 boreholes (BH-4, BH-7, and BH-8) that penetrated down to a depth of ~165 m into massive sulfide. Nearsurface phyllosilicate rich-pockets contain the highest amounts of organics (0.3Wt%) [2], while the deeper rocks contain the highest amount of carbonates. Assessing the amount of C pools available throughout the RT subsurface brings key insight on the type of trophic system sustaining its microbial ecosystem (i.e., heterotrophs vs. autotrophs) and the biogeochemical relationships that characterize a new type of subsurface biosphere at RT. This potentially novel biosphere on Earth could be used as a model to test for extant and extinct life on Mars. Furthermore, having found carbonates in an hyperacidic system (pH ~2.3) brings new insights on the possible occurrence of deep carbonates deposits under low-pH condition on Mars. [1] Boston, P.J., et al., 1992. Icarus 95,300-308; Bonaccorsi, Stoker and Sutter, 2007 Accepted with review in Astrobiology.

[Distribution Characteristics and Source of Fluoride in Groundwater in Lower Plain Area of North China Plain: A Case Study in Nanpi County].

PubMed

Kong, Xiao-le; Wang, Shi-qin; Zhao, Huan; Yuan, Rui-qiang

2015-11-01

There is an obvious regional contradiction between water resources and agricultural produce in lower plain area of North China, however, excessive fluorine in deep groundwater further limits the use of regional water resources. In order to understand the spatial distribution characteristics and source of F(-) in groundwater, study was carried out in Nanpi County by field survey and sampling, hydrogeochemical analysis and stable isotopes methods. The results showed that the center of low fluoride concentrations of shallow groundwater was located around reservoir of Dalang Lake, and centers of high fluoride concentrations were located in southeast and southwest of the study area. The region with high fluoride concentration was consistent with the over-exploitation region of deep groundwater. Point source pollution of subsurface drainage and non-point source of irrigation with deep groundwater in some regions were the main causes for the increasing F(-) concentrations of shallow groundwater in parts of the sampling sites. Rock deposition and hydrogeology conditions were the main causes for the high F(-) concentrations (1.00 mg x L(-1), threshold of drinking water quality standard in China) in deep groundwater. F(-) released from clay minerals into the water increased the F(-) concentrations in deep groundwater because of over-exploitation. With the increasing exploitation and utilization of brackish shallow groundwater and the compressing and restricting of deep groundwater exploitation, the water environment in the middle and east lower plain area of North China will undergo significant change, and it is important to identify the distribution and source of F(-) in surface water and groundwater for reasonable development and use of water resources in future.

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

DOE PAGES

Jungbluth, Sean P.; Glavina del Rio, Tijana; Tringe, Susannah G.; ...

2017-04-06

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “more » Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “ Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Finally, our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments.« less

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jungbluth, Sean P.; Glavina del Rio, Tijana; Tringe, Susannah G.

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “more » Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “ Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Finally, our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments.« less

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

PubMed Central

Glavina del Rio, Tijana; Tringe, Susannah G.; Stepanauskas, Ramunas

2017-01-01

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments. PMID:28396823

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, Jim K.; Balkwill, David L.; Romine, Margaret F.

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteriamore » cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.« less

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

PubMed

Fredrickson, J K; Balkwill, D L; Romine, M F; Shi, T

1999-10-01

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

The deep, hot biosphere: Twenty-five years of retrospection

PubMed Central

Colman, Daniel R.; Poudel, Saroj; Stamps, Blake W.; Boyd, Eric S.; Spear, John R.

2017-01-01

Twenty-five years ago this month, Thomas Gold published a seminal manuscript suggesting the presence of a “deep, hot biosphere” in the Earth’s crust. Since this publication, a considerable amount of attention has been given to the study of deep biospheres, their role in geochemical cycles, and their potential to inform on the origin of life and its potential outside of Earth. Overwhelming evidence now supports the presence of a deep biosphere ubiquitously distributed on Earth in both terrestrial and marine settings. Furthermore, it has become apparent that much of this life is dependent on lithogenically sourced high-energy compounds to sustain productivity. A vast diversity of uncultivated microorganisms has been detected in subsurface environments, and we show that H2, CH4, and CO feature prominently in many of their predicted metabolisms. Despite 25 years of intense study, key questions remain on life in the deep subsurface, including whether it is endemic and the extent of its involvement in the anaerobic formation and degradation of hydrocarbons. Emergent data from cultivation and next-generation sequencing approaches continue to provide promising new hints to answer these questions. As Gold suggested, and as has become increasingly evident, to better understand the subsurface is critical to further understanding the Earth, life, the evolution of life, and the potential for life elsewhere. To this end, we suggest the need to develop a robust network of interdisciplinary scientists and accessible field sites for long-term monitoring of the Earth’s subsurface in the form of a deep subsurface microbiome initiative. PMID:28674200

The Search for Sustainable Subsurface Habitats on Mars, and the Sampling of Impact Ejecta

NASA Astrophysics Data System (ADS)

Ivarsson, Magnus; Lindgren, Paula

2010-07-01

On Earth, the deep subsurface biosphere of both the oceanic and the continental crust is well known for surviving harsh conditions and environments characterized by high temperatures, high pressures, extreme pHs, and the absence of sunlight. The microorganisms of the terrestrial deep biosphere have an excellent capacity for adapting to changing geochemistry, as the alteration of the crust proceeds and the conditions of their habitats slowly change. Despite an almost complete isolation from surface conditions and the surface biosphere, the deep biosphere of the crustal rocks has endured over geologic time. This indicates that the deep biosphere is a self-sufficient system, independent of the global events that occur at the surface, such as impacts, glaciations, sea level fluctuations, and climate changes. With our sustainable terrestrial subsurface biosphere in mind, the subsurface on Mars has often been suggested as the most plausible place to search for fossil Martian life, or even present Martian life. Since the Martian surface is more or less sterile, subsurface settings are the only place on Mars where life could have been sustained over geologic time. To detect a deep biosphere in the Martian basement, drilling is a requirement. However, near future Mars sample return missions are limited by the mission's payload, which excludes heavy drilling equipment and restrict the missions to only dig the topmost meter of the Martian soil. Therefore, the sampling and analysis of Martian impact ejecta has been suggested as a way of accessing the deeper Martian subsurface without using heavy drilling equipment. Impact cratering is a natural geological process capable of excavating and exposing large amounts of rock material from great depths up to the surface. Several studies of terrestrial impact deposits show the preservation of pre-impact biosignatures, such as fossilized organisms and chemical biological markers. Therefore, if the Martian subsurface contains a record of life, it is reasonable to assume that biosignatures derived from the Martian subsurface could also be preserved in the Martian impact ejecta.

Subsurface Organics in Aseptic Cores From the MARTE Robotic Drilling Experiment: Ground truth and Contamination Issues

NASA Astrophysics Data System (ADS)

Bonaccorsi, R.; Stoker, C. R.

2006-12-01

The subsurface is the key environment for searching for life on planets lacking surface life. This includes the search for past/present life on Mars where possible subsurface life could exist [1]. The Mars-Analog-Rio-Tinto-Experiment (MARTE) performed a simulation of a Mars robotic drilling at the RT Borehole#7 Site ~6.07m, atop a massive-pyrite deposit from the Iberian Pyritic Belt. The RT site is considered an important analog of Sinus Meridiani on Mars, an ideal model analog for a subsurface Martian setting [2], and a relevant example of deep subsurface microbial community including aerobic and anaerobic chemoautotrophs [4-5]. Searching for microbes or bulk organics of biological origin in a subsurface sample from a planet is a key scientific objective of Robotic drilling missions. During the 2005 Field experiment 28 minicores were robotically handled and subsampled for life detection experiments under anti-contamination protocols. Ground truth included visual observation of cores and lab based Elemental and Isotope Ratios Mass Spectrometry analysis (EA-IRMS) of bulk organics in Hematite and Gohetite-rich gossanized tuffs, gossan and clay layers within 0-6m-depth. C-org and N-tot vary up to four orders of magnitude among the litter (~11Wt%, 0-1cm) and the mineralized (~3Wt%, 1-3cm) layers, and the first 6 m-depth (C-org=0.02-0.38Wt%). Overall, the distribution/ preservation of plant and soil-derived organics (d13C-org = 26 per mil to 24 per mil) is ten times higher (C-org=0.33Wt%) that in hematite-poor clays, or where rootlets are present, than in hematite- rich samples (C-org=<0.01Wt%). This is consistent with ATP assay (Lightning-MVP, Biocontrol) for total biomass in subsurface (Borehole#7 ~6.07m, ~avg. 153RLU) vs. surface soil samples (~1,500-81,449RLU) [5]. However, the in-situ ATP assay failed in detecting presence of roots during the in-situ life detection experiment. Furthermore, cm-sized roots were overlooked during remote observations. Finally, ATP Luminometry provided insights for potential contamination from core-handling and environmental dust loadings on cleaned/sterilized control surfaces (e.g., 6,782-36,243RLU/cm2). Cleanliness/sterility can be maintained by applying a simple sterile protocol under field conditions. Science results from this research will support future Astrobiology driven drilling mission planned on Mars. Specifically, ground truth offers relevant insights to assess strengths and limits of in-situ/remote observations vs. laboratory measurements. Results from this experiment will also aid the debate on advantages/ disadvantages of manned vs. robotic drilling missions on Mars or other planets. [1] Boston et al., 1997; [2] http://marte.arc.nasa.gov; [3] Stoker, C., et al., 2006 AbSciCon, [4] Stoker et al., submitted; [5] Bonaccorsi., et al., 2006 AbSciCon.

Evidence of biological activity in Hawaiian subsurface basalts

NASA Astrophysics Data System (ADS)

Fisk, M. R.; Storrie-Lombardi, M. C.; Douglas, S.; Popa, R.; McDonald, G.; di Meo-Savoie, C.

2003-12-01

The Hawaii Scientific Drilling Program (HSDP) cored and recovered igneous rock from the surface to a depth of 3109 m near Hilo, Hawaii. Much of the deeper parts of the hole is composed of hyaloclastite (fractured basalt glass that has been cemented in situ with secondary minerals). Some hyaloclastite units have been altered in a manner attributed to microorganisms in volcanic rocks. Samples from one such unit (1336 m to 1404 m below sea level) were examined to test the hypothesis that the alteration was associated with microorganisms. Deep ultraviolet native fluorescence and resonance Raman spectroscopy indicate that nucleic acids and aromatic amino acids are present in clay inside spherical cavities (vesicles) within basalt glass. Chemical mapping shows that phosphorus and carbon were enriched at the boundary between the clay and volcanic glass of the vesicles. Environmental scanning electron microscopy (ESEM) reveals two to three micrometer coccoid structures in these same boundaries. ESEM-linked energy dispersive spectroscopy demonstrated carbon, phosphorous, chloride, and magnesium in these bodies significantly differing from unoccupied neighboring regions of basalt. These observations taken together indicate the presence of microorganisms at the boundary between primary volcanic glass and secondary clays. Amino acids and nucleic acids were extracted from bulk samples of the hyaloclastite unit. Amino acid abundance was low, and if the amino acids are derived from microorganisms in the rock, then there are less than 100,000 cells per gram of rock. Most nucleic acid sequences extracted from the unit were closely related to sequences of Crenarchaeota collected from the subsurface of the ocean floor.

Borehole petrophysical chemostratigraphy of Pennsylvanian black shales in the Kansas subsurface

USGS Publications Warehouse

Doveton, J.H.; Merriam, D.F.

2004-01-01

Pennsylvanian black shales in Kansas have been studied on outcrop for decades as the core unit of the classic Midcontinent cyclothem. These shales appear to be highstand condensed sections in the sequence stratigraphic paradigm. Nuclear log suites provide several petrophysical measurements of rock chemistry that are a useful data source for chemostratigraphic studies of Pennsylvanian black shales in the subsurface. Spectral gamma-ray logs partition natural radioactivity between contributions by U, Th, and K sources. Elevated U contents in black shales can be related to reducing depositional environments, whereas the K and Th contents are indicators of clay-mineral abundance and composition. The photoelectric factor log measurement is a direct function of aggregate atomic number and so is affected by clay-mineral volume, clay-mineral iron content, and other black shale compositional elements. Neutron porosity curves are primarily a response to hydrogen content. Although good quality logs are available for many black shales, borehole washout features invalidate readings from the nuclear contact devices, whereas black shales thinner than tool resolution will be averaged with adjacent beds. Statistical analysis of nuclear log data between black shales in successive cyclothems allows systematic patterns of their chemical and petrophysical properties to be discriminated in both space and time. ?? 2004 Elsevier B.V. All rights reserved.

[Microbes on the edge of global biosphere].

PubMed

Naganuma, T

2000-12-01

The search for life on the edge of global biosphere is a frontier to bridge conventional bio/ecology and exo/astrobiology. This communication reviews the foci of microbiological studies on the inhabitants of the selected "edges", i.e., deep-sea, deep subsurface and Antarctic habitats. The deep-sea is characterized as the no-light (non-photosynthetic) habitat, and the primary production is mostly due to the chemosynthetic autotrophy at the hydrothermal vents and methane-rich seeps. Formation of the chemosynthesis-dependent animal communities in the deep leads to the idea that such communities may be found in "ocean" of the Jovian satellite, Europa. The oxygen minimal layer (OML) in mid-water provides another field of deep-sea research. Modern OML is a relatively thin layer, found between the water depth of 200 and 1000 m, but was much thicker during the periods of oceanic anoxia events (OAEs) in the past. The history of oceanic biosphere is regarded as the cycle of OAE and non-OAE periods, and the remnants of the past OAEs may be seen in the modem OML. Anoxic (no-O2) condition is also characteristic of deep subsurface biosphere. Microorganisms in deep subsurface biosphere exploit every available oxidant, or terminal electron acceptor (TEA), for anaerobic respiration. Sulfate, nitrate, iron (III) and CO2 are the representative TEAs in the deep subsurface. Subsurface of hydrothermal vents, or sub-vent biosphere, may house brine (high salt) habitats and halophilic microorganisms. Some sub-vent halophiles were phylogenetically closely similar to the ones found in the Antarctic habitats which are extremely dry by the liophilizing climate. Below the 3000-4000 m-thick glacier on Antarctica, there have been >70 lakes with liquid water located. One of such sub-glacial lakes, Lake Vostok, has been a target of "life in extreme environments" and is about to be drill-penetrated for microbiological studies. These 'microbiological platforms' will provide new knowledge about the diversity and potential of the Earth's life and facilitate the capability of astrobiologial exploration.

Boosting subsurface life: is subseafloor sediment a natural catalyst for radiolytic hydrogen production?

NASA Astrophysics Data System (ADS)

Sauvage, J.; Graham, D.; Spivack, A. J.; Dunlea, A. G.; Murray, R. W.; D'Hondt, S.

2014-12-01

Naturally occurring production of molecular hydrogen (H2) by water radiolysis may be a fundamentally important source of electron donors (energy) for life in subsurface environments where organic matter is scarce. Previous studies with very high gamma radiation rates and wet mineral phases have reported high H2 production relative to production from water radiolysis in the absence of solid phases. Numerical calculations by other previous studies have predicted enhanced H2 production from seawater radiolysis relative to pure water radiolysis, due to the interaction of anions with hydroxyl radicals. Given these reports, the potential catalytic influences of solid and dissolved chemical phases on radiolytic H2 production need to be carefully quantified in order to fully evaluate the role of radiolytic H2 as a microbial energy source. For such quantification, we undertook gamma-irradiation experiments with pure water, deep ocean water and mixtures (slurries, φ = 0.85) of seawater with: North Pacific abyssal clay and calcareous oozes, coastal sediment, zirconium dioxide, and zeolite. We carried out our experiments at the Rhode Island Nuclear Science Center using a 37Cesium source at low dose rates (up to 0.1 Gy/hr). Our results to date include the following. First, the per-dose radiolytic H2 yield of pure water at low dose rates is directly comparable to the per-dose yield at much higher dose rates (ca. 1 kGy/hr); this result indicates that H2 production rate is linearly related to radiation dose rate across four orders of magnitude. Second, there is no statistically significant difference (90% confidence limit) between the radiolytic H2 yield from pure water and that from seawater; this result rules out influence of abundant seawater salts on H2 yield from water radiolysis. Third, H2 production from a mixture of abyssal clay and seawater is 25% higher than the yield from pure water. This enhanced yield is consistent with catalysis of radiolytic H2 production by zeolite.

Exploring Genomic Diversity Using Metagenomics of Deep-Sea Subsurface Microbes from the Louisville Seamount and the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Tully, B. J.; Sylvan, J. B.; Heidelberg, J. F.; Huber, J. A.

2014-12-01

There are many limitations involved with sampling microbial diversity from deep-sea subsurface environments, ranging from physical sample collection, low microbial biomass, culturing at in situ conditions, and inefficient nucleic acid extractions. As such, we are continually modifying our methods to obtain better results and expanding what we know about microbes in these environments. Here we present analysis of metagenomes sequences from samples collected from 120 m within the Louisville Seamount and from the top 5-10cm of the sediment in the center of the south Pacific gyre (SPG). Both systems are low biomass with ~102 and ~104 cells per cm3 for Louisville Seamount samples analyzed and the SPG sediment, respectively. The Louisville Seamount represents the first in situ subseafloor basalt and the SPG sediments represent the first in situ low biomass sediment microbial metagenomes. Both of these environments, subseafloor basalt and sediments underlying oligotrophic ocean gyres, represent large provinces of the seafloor environment that remain understudied. Despite the low biomass and DNA generated from these samples, we have generated 16 near complete genomes (5 from Louisville and 11 from the SPG) from the two metagenomic datasets. These genomes are estimated to be between 51-100% complete and span a range of phylogenetic groups, including the Proteobacteria, Actinobacteria, Firmicutes, Chloroflexi, and unclassified bacterial groups. With these genomes, we have assessed potential functional capabilities of these organisms and performed a comparative analysis between the environmental genomes and previously sequenced relatives to determine possible adaptations that may elucidate survival mechanisms for these low energy environments. These methods illustrate a baseline analysis that can be applied to future metagenomic deep-sea subsurface datasets and will help to further our understanding of microbiology within these environments.

Deep and Ultra-deep Underground Observatory for In Situ Stress, Fluids, and Life

NASA Astrophysics Data System (ADS)

Boutt, D. F.; Wang, H.; Kieft, T. L.

2008-12-01

The question 'How deeply does life extend into the Earth?' forms a single, compelling vision for multidisciplinary science opportunities associated with physical and biological processes occurring naturally or in response to construction in the deep and ultra-deep subsurface environment of the Deep Underground Science and Engineering Laboratory (DUSEL) in the former Homestake mine. The scientific opportunity is to understand the interaction between the physical environment and microbial life, specifically, the coupling among (1) stress state and deformation; (2) flow and transport and origin of fluids; and (3) energy and nutrient sources for microbial life; and (4) microbial identity, diversity and activities. DUSEL-Homestake offers the environment in which these questions can be addressed unencumbered by competing human activities. Associated with the interaction among these variables are a number of questions that will be addressed at variety of depths and scales in the facility: What factors control the distribution of life as a function of depth and temperature? What patterns in microbial diversity, microbial activity and nutrients are found along this gradient? How do state variables (stress, strain, temperature, and pore pressure) and constitutive properties (permeability, porosity, modulus, etc.) vary with scale (space, depth, time) in a large 4D heterogeneous system: core - borehole - drift - whole mine - regional? How are fluid flow and stress coupled in a low-permeability, crystalline environment dominated by preferential flow paths? How does this interaction influence the distribution of fluids, solutes, gases, colloids, and biological resources (e.g. energy and nutritive substrates) in the deep continental subsurface? What is the interaction between geomechanics/geohydrology and microbiology (microbial abundance, diversity, distribution, and activities)? Can relationships elucidated within the mechanically and hydrologically altered subsurface habitat of the Homestake DUSEL be extrapolated to the pristine subsurface biosphere? In the absence of extensive intrusive investigations (drifts, mines, etc), can we characterize hydrogeologic and geomechanical processes in the subsurface? To what depth can we effectively characterize such processes, and what is the confidence in our interpretations? In addition to addressing these question in the 10-km3 of mine volume, the Homestake facility offers the deepest drilling platform in North America. The extant depth of 8000 feet can be doubled by drilling. An array of three or more 8,200 ft. boreholes, wire-line drilled from the 8,000 ft. level at Homestake will probe to at least 16,200 ft. below land surface, a depth at this location approaching the expected lower biosphere limit (e.g. the 120°C isotherm). Cores will be collected aseptically and then fracture patterns (e.g., orientation, aperture, etc.) will be determined and fracture fluids will be intensively sampled over time. Cores and fracture fluids will be analyzed for indigenous microbial communities, including their genetic elements, metabolic processes, and biosignatures.

Understanding the role of clay minerals in the chromium(VI) bioremoval by Pseudomonas aeruginosa CCTCC AB93066 under growth condition: microscopic, spectroscopic and kinetic analysis.

PubMed

Kang, Chunxi; Wu, Pingxiao; Li, Yuewu; Ruan, Bo; Li, Liping; Tran, Lytuong; Zhu, Nengwu; Dang, Zhi

2015-11-01

Laboratory batch experiments were conducted to investigate the role of clay minerals, e.g., kaolinite and vermiculite, in microbial Cr(VI) reduction by Pseudomonas aeruginosa under growth condition in glucose-amended mediums as a method for treating Cr(VI)-contaminated subsurface environment such as soil. Our results indicated that glucose could acted as an essential electron donor, and clay minerals significantly enhanced microbial Cr(VI) reduction rates by improving the consumption rate of glucose and stimulating the growth and propagation of P. aeruginosa. Cr(VI) bioreduction by both free cells and clay minerals-amended cells followed the pseudo-first-order kinetic model, with the latter one fitting better. The mass balance analyses and X-ray photoelectron spectroscopy analysis found that Cr(VI) was reduced to Cr(III) and the adsorption of total chromium on clay minerals-bacteria complex was small, implying that Cr(VI) bioremoval was not mainly due to the adsorption of Cr(VI) onto cells or clay minerals or clay minerals-cells complex but mainly due to the Cr(VI) reduction capacity of P. aeruginosa under the experimental conditions studied (e.g., pH 7). Atomic force microscopy revealed that the addition of clay minerals (e.g. vermiculite) decreased the surface roughness of Cr(VI)-laden cells and changed the cell morphology and dimension. Fourier transform infrared spectroscopy revealed that organic matters such as aliphatic species and/or proteins played an important role in the combination of cells and clay minerals. Scanning electron microscopy confirmed the attachment of cells on the surface of clay minerals, indicating that clay minerals could provide a microenvironment to protect cells from Cr(VI) toxicity and serve as growth-supporting materials. These findings manifested the underlying influence of clay minerals on microbial reduction of Cr(VI) and gave an understanding of the interaction between pollutants, the environment and the biota.

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

DOE PAGES

Hurt, Jr., Richard A.; Robeson II, Michael S.; Shakya, Migun; ...

2014-07-14

Despite more than three decades of progress, efficient nucleic acid extraction from microbial communities has remained difficult, particularly from clay environments. Lysis with concentrated guanidine followed by concentrated sodium phosphate extraction supported DNA and RNA recovery from high iron, low humus content clay. Alterating the extraction pH or using other ionic solutions (Na 2SO 4 and NH 4H 2PO 4) yielded no detectable nucleic acid. DNA recovered using a lysis solution with 500 mM phosphate buffer (PB) followed by a 1 M PB wash was 15.22±2.33 g DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25more » g DNA/g clay with the Powerlyzer soil DNA system (MoBio). Increasing [PB] in the lysis reagent coincided with increasing DNA fragment length. Rarefaction plots based on16S rRNA (V1/V3 region) pyrosequencing libraries from A-horizon and clay soils showed an ~80% and ~400% larger accessed diversity compared to a previous grinding protocol or the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more bacterial species recovered using this system. Additionally, some OTU's having more than 100 sequences in these libraries were absent in samples extracted using the PowerLyzer reagents or the previous lysis method.« less

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hurt, Jr., Richard A.; Robeson II, Michael S.; Shakya, Migun

Despite more than three decades of progress, efficient nucleic acid extraction from microbial communities has remained difficult, particularly from clay environments. Lysis with concentrated guanidine followed by concentrated sodium phosphate extraction supported DNA and RNA recovery from high iron, low humus content clay. Alterating the extraction pH or using other ionic solutions (Na 2SO 4 and NH 4H 2PO 4) yielded no detectable nucleic acid. DNA recovered using a lysis solution with 500 mM phosphate buffer (PB) followed by a 1 M PB wash was 15.22±2.33 g DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25more » g DNA/g clay with the Powerlyzer soil DNA system (MoBio). Increasing [PB] in the lysis reagent coincided with increasing DNA fragment length. Rarefaction plots based on16S rRNA (V1/V3 region) pyrosequencing libraries from A-horizon and clay soils showed an ~80% and ~400% larger accessed diversity compared to a previous grinding protocol or the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more bacterial species recovered using this system. Additionally, some OTU's having more than 100 sequences in these libraries were absent in samples extracted using the PowerLyzer reagents or the previous lysis method.« less

Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland.

PubMed

Sohlberg, Elina; Bomberg, Malin; Miettinen, Hanna; Nyyssönen, Mari; Salavirta, Heikki; Vikman, Minna; Itävaara, Merja

2015-01-01

The diversity and functional role of fungi, one of the ecologically most important groups of eukaryotic microorganisms, remains largely unknown in deep biosphere environments. In this study we investigated fungal communities in packer-isolated bedrock fractures in Olkiluoto, Finland at depths ranging from 296 to 798 m below surface level. DNA- and cDNA-based high-throughput amplicon sequencing analysis of the fungal internal transcribed spacer (ITS) gene markers was used to examine the total fungal diversity and to identify the active members in deep fracture zones at different depths. Results showed that fungi were present in fracture zones at all depths and fungal diversity was higher than expected. Most of the observed fungal sequences belonged to the phylum Ascomycota. Phyla Basidiomycota and Chytridiomycota were only represented as a minor part of the fungal community. Dominating fungal classes in the deep bedrock aquifers were Sordariomycetes, Eurotiomycetes, and Dothideomycetes from the Ascomycota phylum and classes Microbotryomycetes and Tremellomycetes from the Basidiomycota phylum, which are the most frequently detected fungal taxa reported also from deep sea environments. In addition some fungal sequences represented potentially novel fungal species. Active fungi were detected in most of the fracture zones, which proves that fungi are able to maintain cellular activity in these oligotrophic conditions. Possible roles of fungi and their origin in deep bedrock groundwater can only be speculated in the light of current knowledge but some species may be specifically adapted to deep subsurface environment and may play important roles in the utilization and recycling of nutrients and thus sustaining the deep subsurface microbial community.

Use of groundwater lifetime expectancy for the performance assessment of a deep geologic radioactive waste repository: 2. Application to a Canadian Shield environment

NASA Astrophysics Data System (ADS)

Park, Y.-J.; Cornaton, F. J.; Normani, S. D.; Sykes, J. F.; Sudicky, E. A.

2008-04-01

F. J. Cornaton et al. (2008) introduced the concept of lifetime expectancy as a performance measure of the safety of subsurface repositories, on the basis of the travel time for contaminants released at a certain point in the subsurface to reach the biosphere or compliance area. The methodologies are applied to a hypothetical but realistic Canadian Shield crystalline rock environment, which is considered to be one of the most geologically stable areas on Earth. In an approximately 10 × 10 × 1.5 km3 hypothetical study area, up to 1000 major and intermediate fracture zones are generated from surface lineament analyses and subsurface surveys. In the study area, mean and probability density of lifetime expectancy are analyzed with realistic geologic and hydrologic shield settings in order to demonstrate the applicability of the theory and the numerical model for optimally locating a deep subsurface repository for the safe storage of spent nuclear fuel. The results demonstrate that, in general, groundwater lifetime expectancy increases with depth and it is greatest inside major matrix blocks. Various sources and aspects of uncertainty are considered, specifically geometric and hydraulic parameters of permeable fracture zones. Sensitivity analyses indicate that the existence and location of permeable fracture zones and the relationship between fracture zone permeability and depth from ground surface are the most significant factors for lifetime expectancy distribution in such a crystalline rock environment. As a consequence, it is successfully demonstrated that the concept of lifetime expectancy can be applied to siting and performance assessment studies for deep geologic repositories in crystalline fractured rock settings.

The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways.

PubMed

Sousa, Diana Z; Visser, Michael; van Gelder, Antonie H; Boeren, Sjef; Pieterse, Mervin M; Pinkse, Martijn W H; Verhaert, Peter D E M; Vogt, Carsten; Franke, Steffi; Kümmel, Steffen; Stams, Alfons J M

2018-01-16

Methanol is generally metabolized through a pathway initiated by a cobalamine-containing methanol methyltransferase by anaerobic methylotrophs (such as methanogens and acetogens), or through oxidation to formaldehyde using a methanol dehydrogenase by aerobes. Methanol is an important substrate in deep-subsurface environments, where thermophilic sulfate-reducing bacteria of the genus Desulfotomaculum have key roles. Here, we study the methanol metabolism of Desulfotomaculum kuznetsovii strain 17 T , isolated from a 3000-m deep geothermal water reservoir. We use proteomics to analyze cells grown with methanol and sulfate in the presence and absence of cobalt and vitamin B12. The results indicate the presence of two methanol-degrading pathways in D. kuznetsovii, a cobalt-dependent methanol methyltransferase and a cobalt-independent methanol dehydrogenase, which is further confirmed by stable isotope fractionation. This is the first report of a microorganism utilizing two distinct methanol conversion pathways. We hypothesize that this gives D. kuznetsovii a competitive advantage in its natural environment.

Deep Boreholes Seals Subjected to High P,T conditions - Proposed Experimental Studies

NASA Astrophysics Data System (ADS)

Caporuscio, F.

2015-12-01

Deep borehole experimental work will constrain the P,T conditions which "seal" material will experience in deep borehole crystalline rock repositories. The rocks of interest to this study include mafic (amphibolites) and silicic (granitic gneiss) end members. The experiments will systematically add components to capture discrete changes in both water and EBS component chemistries. Experiments in the system wall rock-clay-concrete-groundwater will evaluate interactions among components, including: mineral phase stability, metal corrosion rates and thermal limits. Based on engineered barrier studies, experimental investigations will move forward with three focusses. First, evaluation of interaction between "seal" materials and repository wall rock (crystalline) under fluid-saturated conditions over long-term (i.e., six-month) experiments; which reproduces the thermal pulse event of a repository. Second, perform experiments to determine the stability of zeolite minerals (analcime-wairakitess) under repository conditions. Both sets of experiments are critically important for understanding mineral paragenesis (zeolites and/or clay transformations) associated with "seals" in contact with wall rock at elevated temperatures. Third, mineral growth at the metal interface is a principal control on the survivability (i.e. corrosion) of waste canisters in a repository. The objective of this planned experimental work is to evaluate physio-chemical processes for 'seal' components and materials relevant to deep borehole disposal. These evaluations will encompass multi-laboratory efforts for the development of seals concepts and application of Thermal-Mechanical-Chemical (TMC) modeling work to assess barrier material interactions with subsurface fluids and other barrier materials, their stability at high temperatures, and the implications of these processes to the evaluation of thermal limits.

Genomic variation of subseafloor archaeal and bacterial populations from venting fluids at the Mid-Cayman Rise

NASA Astrophysics Data System (ADS)

Anderson, R. E.; Eren, A. M.; Stepanauskas, R.; Huber, J. A.; Reveillaud, J.

2015-12-01

Deep-sea hydrothermal vent systems serve as windows to a dynamic, gradient-dominated deep biosphere that is home to a wide diversity of archaea, bacteria, and viruses. Until recently the majority of these microbial lineages were uncultivated, resulting in a poor understanding of how the physical and geochemical context shapes microbial evolution in the deep subsurface. By comparing metagenomes, metatranscriptomes and single-cell genomes between geologically distinct vent fields, we can better understand the relationship between the environment and the evolution of subsurface microbial communities. An ideal setting in which to use this approach is the Mid-Cayman Rise, located on the world's deepest and slowest-spreading mid-ocean ridge, which hosts both the mafic-influenced Piccard and ultramafic-influenced Von Damm vent fields. Previous work has shown that Von Damm has higher taxonomic and metabolic diversity than Piccard, consistent with geochemical model expectations, and the fluids from all vents are enriched in hydrogen (Reveillaud et al., submitted). Mapping of both metagenomes and metatranscriptomes to a combined assembly showed very little overlap among the Von Damm samples, indicating substantial variability that is consistent with the diversity of potential metabolites in this ultramafic vent field. In contrast, the most consistently abundant and active lineage across the Piccard samples was Sulfurovum, a sulfur-oxidizing chemolithotroph that uses nitrate or oxygen as an electron acceptor. Moreover, analysis of point mutations within individual lineages suggested that Sulfurovumat Piccard is under strong selection, whereas microbial genomes at Von Damm were more variable. These results are consistent with the hypothesis that the subsurface environment at Piccard supports the emergence of a dominant lineage that is under strong selection pressure, whereas the more geochemically diverse microbial habitat at Von Damm creates a wider variety of stable ecological niches, facilitating higher diversity both within and between microbial lineages. By examining how the environment is imprinted into microbial genomes, we hope to gain insight into how subsurface microbial communities co-evolve with their environment in both the present and the deep past.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, E.J.; Wijesinghe, A.M.; Viani, B.E.

1997-01-14

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculants and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude. 8 figs.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, Edward J.; Wijesinghe, Ananda M.; Viani, Brian E.

1997-01-01

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculents and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude.

Kinetics and Products of Chromium(VI) Reduction by Iron(II/III)-Bearing Clay Minerals.

PubMed

Joe-Wong, Claresta; Brown, Gordon E; Maher, Kate

2017-09-05

Hexavalent chromium is a water-soluble pollutant, the mobility of which can be controlled by reduction of Cr(VI) to less soluble, environmentally benign Cr(III). Iron(II/III)-bearing clay minerals are widespread potential reductants of Cr(VI), but the kinetics and pathways of Cr(VI) reduction by such clay minerals are poorly understood. We reacted aqueous Cr(VI) with two abiotically reduced clay minerals: an Fe-poor montmorillonite and an Fe-rich nontronite. The effects of ionic strength, pH, total Fe content, and the fraction of reduced structural Fe(II) [Fe(II)/Fe(total)] were examined. The last variable had the largest effect on Cr(VI) reduction kinetics: for both clay minerals, the rate constant of Cr(VI) reduction varies by more than 3 orders of magnitude with Fe(II)/Fe(total) and is described by a linear free energy relationship. Under all conditions examined, Cr and Fe K-edge X-ray absorption near-edge structure spectra show that the main Cr-bearing product is a Cr(III)-hydroxide and that Fe remains in the clay structure after reacting with Cr(VI). This study helps to quantify our understanding of the kinetics of Cr(VI) reduction by Fe(II/III)-bearing clay minerals and may improve predictions of Cr(VI) behavior in subsurface environments.

Clay with Desiccation Cracks is an Advection Dominated Environment

NASA Astrophysics Data System (ADS)

Baram, S.; Kurtzman, D.; Sher, Y.; Ronen, Z.; Dahan, O.

2012-04-01

Heavy clay sediments are regarded "safe" from the hydrological point of view due to their low hydraulic conductivities. However, the formation of desiccation cracks in dispersive clays may dramatically change their bulk hydraulic properties. The impact of desiccation cracks on water percolation, dissolved salts and contaminants transport and redox related reactions (microbial ammonium oxidation and denitrification) were investigated in 6 -12 m clay layer near a diary farm waste lagoon. The study implemented unique vadose-zone monitoring systems that enable in-situ measurements of the temporal variation of the sediment's water content along with frequent sampling of the sediment's pore water along the entire vadose zone (> 30 m). Results from four years of continuous measurements showed quick rises in sediment water content following rain events and temporal wastewater overflows. The percolation pattern indicated dominance of preferential flow through a desiccation-cracks network crossing the entire clay sediment layer. High water-propagation velocities (0.4 - 23.6 m h-1) were observed, indicating that the desiccation-crack network remains open and serves as a preferential flow pathway year-round, even at high sediment water content (~0.50 m3 m-3). The rapid percolation bypassed the most bio-geo-active parts of the soil, transporting even highly sorptive contaminants (testosterone and estrogen) in to the deep sections of the vadose zone, accelerating the underlying groundwater contamination. The ammonium and nitrate concentrations in the vadose zone and the high number of nitrifying and denitrifying bacteria (~108 gene copies gdry-sediemt-1, each) found in the sediment indicated that the entire vadose zone is aerated even at high water content conditions (~0.55 m3 m-3). The dissolved salts concentration in the pore-water and the δ2H-H2O and δ18O-H2O values of the pore-water substantially increased with depth (becoming less depleted) in the clay sediment, indicating deep soil evaporation. Daily fluctuation of the air temperature in the desiccation cracks supported thermally induced air convection within the cracks void and could explain the deep soil salinization process. Combination of all the abovementioned observations demonstrated that the formation of desiccation cracks network in dispersive clay sediments generates a bulk advection dominated environment for both air and water flow, and that the reference to clay sediments as "hydrologically safe" should to be reconsidered.

Molecular diversity of bacterial communities from subseafloor rock samples in a deep-water production basin in Brazil.

PubMed

von der Weid, Irene; Korenblum, Elisa; Jurelevicius, Diogo; Rosado, Alexandre Soares; Dino, Rodolfo; Sebastian, Gina Vasquez; Seldin, Lucy

2008-01-01

The deep subseafloor rock in oil reservoirs represents a unique environment in which a high oilcontamination and very low biomass can be observed. Sampling this environment has been a challenge owing to the techniques used for drilling and coring. In this study, the facilities developed by the Brazilian oil company PETROBRAS for accessing deep subsurface oil reservoirs were used to obtain rock samples at 2,822-2,828 m below the ocean floor surface from a virgin field located in the Atlantic Ocean, Rio de Janeiro. To address the bacterial diversity of these rock samples, PCR amplicons were obtained using the DNA from four core sections and universal primers for 16S rRNA and for APS reductase (aps) genes. Clone libraries were generated from these PCR fragments and 87 clones were sequenced. The phylogenetic analyses of the 16S rDNA clone libraries showed a wide distribution of types in the domain bacteria in the four core samples, and the majority of the clones were identified as belonging to Betaproteobacteria. The sulfate-reducing bacteria community could only be amplified by PCR in one sample, and all clones were identified as belonging to Gammaproteobacteria. For the first time, the bacterial community was assessed in such deep subsurface environment.

Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA

PubMed Central

Osburn, Magdalena R.; LaRowe, Douglas E.; Momper, Lily M.; Amend, Jan P.

2014-01-01

The deep subsurface is an enormous repository of microbial life. However, the metabolic capabilities of these microorganisms and the degree to which they are dependent on surface processes are largely unknown. Due to the logistical difficulty of sampling and inherent heterogeneity, the microbial populations of the terrestrial subsurface are poorly characterized. In an effort to better understand the biogeochemistry of deep terrestrial habitats, we evaluate the energetic yield of chemolithotrophic metabolisms and microbial diversity in the Sanford Underground Research Facility (SURF) in the former Homestake Gold Mine, SD, USA. Geochemical data, energetic modeling, and DNA sequencing were combined with principle component analysis to describe this deep (down to 8100 ft below surface), terrestrial environment. SURF provides access into an iron-rich Paleoproterozoic metasedimentary deposit that contains deeply circulating groundwater. Geochemical analyses of subsurface fluids reveal enormous geochemical diversity ranging widely in salinity, oxidation state (ORP 330 to −328 mV), and concentrations of redox sensitive species (e.g., Fe2+ from near 0 to 6.2 mg/L and Σ S2- from 7 to 2778μg/L). As a direct result of this compositional buffet, Gibbs energy calculations reveal an abundance of energy for microorganisms from the oxidation of sulfur, iron, nitrogen, methane, and manganese. Pyrotag DNA sequencing reveals diverse communities of chemolithoautotrophs, thermophiles, aerobic and anaerobic heterotrophs, and numerous uncultivated clades. Extrapolated across the mine footprint, these data suggest a complex spatial mosaic of subsurface primary productivity that is in good agreement with predicted energy yields. Notably, we report Gibbs energy normalized both per mole of reaction and per kg fluid (energy density) and find the later to be more consistent with observed physiologies and environmental conditions. Further application of this approach will significantly expand our understanding of the deep terrestrial biosphere. PMID:25429287

In situ Detection of Microbial Life in the Deep Biosphere in Igneous Ocean Crust.

PubMed

Salas, Everett C; Bhartia, Rohit; Anderson, Louise; Hug, William F; Reid, Ray D; Iturrino, Gerardo; Edwards, Katrina J

2015-01-01

The deep biosphere is a major frontier to science. Recent studies have shown the presence and activity of cells in deep marine sediments and in the continental deep biosphere. Volcanic lavas in the deep ocean subsurface, through which substantial fluid flow occurs, present another potentially massive deep biosphere. We present results from the deployment of a novel in situ logging tool designed to detect microbial life harbored in a deep, native, borehole environment within igneous oceanic crust, using deep ultraviolet native fluorescence spectroscopy. Results demonstrate the predominance of microbial-like signatures within the borehole environment, with densities in the range of 10(5) cells/mL. Based on transport and flux models, we estimate that such a concentration of microbial cells could not be supported by transport through the crust, suggesting in situ growth of these communities.

Reexamining ultrafiltration and solute transport in groundwater

NASA Astrophysics Data System (ADS)

Neuzil, C. E.; Person, Mark

2017-06-01

Geologic ultrafiltration—slowing of solutes with respect to flowing groundwater—poses a conundrum: it is consistently observed experimentally in clay-rich lithologies, but has been difficult to identify in subsurface data. Resolving this could be important for clarifying clay and shale transport properties at large scales as well as interpreting solute and isotope patterns for applications ranging from nuclear waste repository siting to understanding fluid transport in tectonically active environments. Simulations of one-dimensional NaCl transport across ultrafiltering clay membrane strata constrained by emerging data on geologic membrane properties showed different ultrafiltration effects than have often been envisioned. In relatively high-permeability advection-dominated regimes, salinity increases occurred mostly within membrane units while their effluent salinity initially fell and then rose to match solute delivery. In relatively low-permeability diffusion-dominated regimes, salinity peaked at the membrane upstream boundary and effluent salinity remained low. In both scenarios, however, only modest salinity changes (up to ˜3 g L-1) occurred because of self-limiting tendencies; membrane efficiency declines as salinity rises, and although sediment compaction increases efficiency, it is also decreases permeability and allows diffusive transport to dominate. It appears difficult for ultrafiltration to generate brines as speculated, but widespread and less extreme ultrafiltration effects in the subsurface could be unrecognized. Conditions needed for ultrafiltration are present in settings that include topographically-driven flow systems, confined aquifer systems subjected to injection or withdrawal, compacting basins, and accretionary complexes.

Reexamining ultrafiltration and solute transport in groundwater

USGS Publications Warehouse

Neuzil, Christopher E.; Person, Mark

2017-01-01

Geologic ultrafiltration—slowing of solutes with respect to flowing groundwater—poses a conundrum: it is consistently observed experimentally in clay-rich lithologies, but has been difficult to identify in subsurface data. Resolving this could be important for clarifying clay and shale transport properties at large scales as well as interpreting solute and isotope patterns for applications ranging from nuclear waste repository siting to understanding fluid transport in tectonically active environments. Simulations of one-dimensional NaCl transport across ultrafiltering clay membrane strata constrained by emerging data on geologic membrane properties showed different ultrafiltration effects than have often been envisioned. In relatively high-permeability advection-dominated regimes, salinity increases occurred mostly within membrane units while their effluent salinity initially fell and then rose to match solute delivery. In relatively low-permeability diffusion-dominated regimes, salinity peaked at the membrane upstream boundary and effluent salinity remained low. In both scenarios, however, only modest salinity changes (up to ∼3 g L−1) occurred because of self-limiting tendencies; membrane efficiency declines as salinity rises, and although sediment compaction increases efficiency, it is also decreases permeability and allows diffusive transport to dominate. It appears difficult for ultrafiltration to generate brines as speculated, but widespread and less extreme ultrafiltration effects in the subsurface could be unrecognized. Conditions needed for ultrafiltration are present in settings that include topographically-driven flow systems, confined aquifer systems subjected to injection or withdrawal, compacting basins, and accretionary complexes.

Spatial Statistics of Deep-Water Ambient Noise; Dispersion Relations for Sound Waves and Shear Waves

DTIC Science & Technology

2015-09-30

propagation in very fine-grained sediments (silt and clay ). OBJECTIVES 1) The scientific objective of the deep-water ambient noise research is to...forces in silts and clays and the role they play in controlling wave speeds and attenuations. On a 2 quantum mechanical level, these forces are... clays . APPROACH 1) Deep-water ambient noise Three deep-diving, autonomous instrument platforms, known as Deep Sound I, II, & III, have been

Differential Bacterial Colonization of Volcanic Minerals in Deep Thermal Basalts

NASA Astrophysics Data System (ADS)

Smith, A. R.; Popa, R.; Fisk, M. R.; Nielsen, M.; Wheat, G.; Jannasch, H.; Fisher, A.; Sievert, S.

2010-04-01

There are reports of microbial weathering patterns in volcanic glass and minerals of both terrestrial and Martian origin. Volcanic minerals are colonized differentially in subsurface hydrothermal environments by a variety of physiological types.

Detection and Characterization of Martian Volatile-Rich Reservoirs: The Netlander Approach

NASA Technical Reports Server (NTRS)

Banerdt, B.; Costard, F.; Berthelier, J. J.; Musmann, G.; Menvielle, M.; Lognonne, P.; Giardini, D.; Harri, A.-M.; Forget, F.

2000-01-01

Geological and theoretical modeling do indicate that, most probably, a significant part of the volatiles present in the past is presently stocked within the Martian subsurface as ground ice, and as clay minerals (water constitution). The detection of liquid water is of prime interest and should have deep implications in the understanding of the Martian hydrological cycle and also in exobiology. In the frame of the 2005 joint CNES-NASA mission to Mars, a set of 4 NETLANDERs developed by an European consortium is expected to be launched between 2005 and 2007. The geophysical package of each lander will include a geo-radar (GPR experiment), a magnetometer (MAGNET experiment), a seismometer (SEIS experiment) and a meteorological package (ATMIS experiment). The NETLANDER mission offers a unique opportunity to explore simultaneously the subsurface as well as deeper layers of the planetary interior on 4 different landing sites. The complementary contributions of all these geophysical soundings onboard the NETLANDER stations are presented.

Geochemical modeling of subsurface fluid generation in the Gulf of Cadiz

NASA Astrophysics Data System (ADS)

Schmidt, Christopher; Hensen, Christian; Wallmann, Klaus

2016-04-01

During RV METEOR cruise M86/5 in 2012 a number of deep-sea mud volcanoes were discovered at about 4500 m water depth west of the deformation front of the accretionary wedge in the Gulf of Cadiz (NE Atlantic). Fluid flow at these locations is mediated by an active strike-slip fault marking the transcurrent plate boundary between Africa and Eurasia. Geochemical signals of emanating fluids have been interpreted as being a mixture of various deep-sourced processes such as the alteration of oceanic crust, clay-mineral dehydration, and recrystallization of carbonaceous, Upper Jurassic sediments (Hensen et al. 2015). In the current study we present results of a geochemical reactive-transport model that was designed to simulate major fluid-affecting processes, such as the smectite to illite transformation or recrystallization of carbonates in order to provide a proof of concept. Preliminary results show that the model is able to reproduce pore water signatures (e.g. for chloride, strontium, 87Sr/86Sr) in subsurface sediments that are similar to those of MV fluids. Hensen, C., Scholz, F., Nuzzo, M., Valadares, V., Gràcia, E., Terrinha, P., Liebetrau, V., Kaul, N., Silva, S., Martínez-Loriente, S., Bartolome, R., Piñero, E., Magalhães, V.H., Schmidt, M., Weise, S.M., Cunha, M., Hilario, A., Perea, H., Rovelli, L. and Lackschewitz, K. (2015) Strike-slip faults mediate the rise of crustal-derived fluids and mud volcanism in the deep sea. Geology 43, 339-342.

Analysis of a PAH-degrading bacterial population in subsurface sediments on the Mid-Atlantic Ridge

NASA Astrophysics Data System (ADS)

Shao, Zongze; Cui, Zhisong; Dong, Chunming; Lai, Qiliang; Chen, Liang

2010-05-01

Little is known about the types and concentrations of polycyclic aromatic hydrocarbons (PAHs) existing in the deep-sea subsurface environment, which is believed to be cold, oligothrophic and of high static pressure. PAHs in the upper layers of the water column are unavoidably subjected to degradation while they are deposited to the sea floor and become embedded in the deep-sea sediment. In this report, a high concentration of PAHs was discovered in the sediment 2.7 m beneath the bottom surface at a water depth of 3962 m on the Mid-Atlantic Ridge (MAR). The total concentration of PAHs was 445 ng (g dry wt sediment) -1. Among the seven detected PAHs, the concentrations of phenanthrene (222 ng g -1) and fluorene (79 ng g -1) were relatively high. In addition, PAH-degrading bacteria were found within the sediments. As in a previously detected site on the MAR, in the PAH-enriched region of this site, a bacterium of the genus Cycloclasticus was found to be the predominant isolate detected by PCR-DGGE analysis. In addition, bacteria of the Halomonas, Marinobacter, Alcanivorax, Thalassospira and Maricaulis genera, were also included in the PAH-degrading community. In summary, a high concentration of PAHs was detected in the subsurface of the deep-sea sediment, and once again, the Cycloclasticus bacterium was confirmed to be a ubiquitous marine PAH degrader even in the subsurface marine environment. Considering the abundance of PAHs therein, biodegradation is thus thought to be inactive, probably because of the low temperature, limited oxygen and/or limited nutrients.

In situ Detection of Microbial Life in the Deep Biosphere in Igneous Ocean Crust

PubMed Central

Salas, Everett C.; Bhartia, Rohit; Anderson, Louise; Hug, William F.; Reid, Ray D.; Iturrino, Gerardo; Edwards, Katrina J.

2015-01-01

The deep biosphere is a major frontier to science. Recent studies have shown the presence and activity of cells in deep marine sediments and in the continental deep biosphere. Volcanic lavas in the deep ocean subsurface, through which substantial fluid flow occurs, present another potentially massive deep biosphere. We present results from the deployment of a novel in situ logging tool designed to detect microbial life harbored in a deep, native, borehole environment within igneous oceanic crust, using deep ultraviolet native fluorescence spectroscopy. Results demonstrate the predominance of microbial-like signatures within the borehole environment, with densities in the range of 105 cells/mL. Based on transport and flux models, we estimate that such a concentration of microbial cells could not be supported by transport through the crust, suggesting in situ growth of these communities. PMID:26617595

[Distribution and enrichment characteristics of organic carbon and total nitrogen in mollisols under long-term fertilization].

PubMed

Xu, Xiang-ru; Luo, Kun; Zhou, Bao-ku; Wang, Jing-kuan; Zhang, Wen-ju; Xu, Ming-gang

2015-07-01

The characteristics and changes of soil organic carbon (SOC) and total nitrogen (TN) in different size particles of soil under different agricultural practices are the basis for better understanding soil carbon sequestration of mollisols. Based on a 31-year long-term field experiment located at the Heilongjiang Academy of Agricultural Sciences (Harbin) , soil samples under six treatments were separated by size-fractionation method to explore changes and distribution of SOC and TN in coarse sand, fine sand, silt and clay from the top layer (0-20 cm) and subsurface layer (20-40 cm). Results showed that long-term application of manure (M) increased the percentages of SOC and TN in coarse sand and clay size fractions. In the top layer, application of nitrogen, phosphorus and potassium fertilizers combined with manure (NPKM) increased the percentages of SOC and TN in coarse sand by 191.3% and 179.3% compared with the control (CK), whereas M application increased the percentages of SOC and TN in clay by 45% and 47% respectively. For subsurface layers, the increase rates of SOC and TN in corresponding parts were lower than that in top layer. In the surface and subsurface layers, the percentages of SOC storage in silt size fraction accounted for 42%-63% and 48%-54%, TN storage accounted for 34%-59% and 41%-47%, respectively. The enrichment factors of SOC and TN in coarse sand and clay fractions of surface layers increased significantly under the treatments with manure. The SOC and TN enrichment factors were highest in the NPKM, being 2.30 and 1.88, respectively, while that in the clay fraction changed little in the subsurface layer.

Survivability and growth kinetics of methanogenic archaea at various pHs and pressures: Implications for deep subsurface life on Mars

NASA Astrophysics Data System (ADS)

Sinha, Navita; Nepal, Sudip; Kral, Timothy; Kumar, Pradeep

2017-02-01

Life as we know it requires liquid water and sufficient liquid water is highly unlikely on the surface of present-day Mars. However, according to thermal models there is a possibility of liquid water in the deep subsurface of Mars. Thus, the martian subsurface, where the pressure and temperature is higher, could potentially provide a hospitable environment for a biosphere. Also, methane has been detected in the Mars' atmosphere. Analogous to Earth's atmospheric methane, martian methane could also be biological in origin. The carbon and energy sources for methanogenesis in the subsurface of Mars could be available by downwelling of atmospheric CO2 into the regolith and water-rock reactions such as serpentinization, respectively. Corresponding analogs of the martian subsurface on Earth might be the active sites of serpentinization at depths where methanogenic thermophilic archaea are the dominant species. Methanogens residing in Earth's hydrothermal environments are usually exposed to a variety of physiological stresses including a wide range of pressures, temperatures, and pHs. Martian geochemical models imply that the pH of probable groundwater varies from 4.96 to 9.13. In this work, we used the thermophilic methanogen, Methanothermobacter wolfeii, which grows optimally at 55oC. Therefore, a temperature of 55oC was chosen for these experiments, possibly simulating Mars' subsurface temperature. A martian geophysical model suggests depth and pressure corresponding to a temperature of 55 °C would be between 1-30 km and 100-3,000 atm respectively. Here, we have simulated Mars deep subsurface pH, pressure, and temperature conditions and have investigated the survivability, growth rate, and morphology of M. wolfeii after exposure to a wide range of pH 5-9) and pressure (1-1200 atm) at a temperature of 55 °C. Interestingly, in this study we have found that M. wolfeii was able to survive at all the pressures and pHs tested at 55 °C. In order to understand the effect of different pHs and pressures on the metabolic activities of M. wolfeii, we also calculated their growth rate by measuring methane concentration in the headspace gas samples at regular intervals. In acidic conditions, the growth rate (γ) of M. wolfeii increased with the increase in pressure. In neutral and alkaline conditions, the growth rate (γ) of M. wolfeii initially increased with pressure, but decreased upon further increase of pressure. To investigate the effect of combined pH, pressure, and temperature on the morphology of M. wolfeii, we took phase contrast images of the cells. We did not find any obvious significant alteration in the morphology of M. wolfeii cells. Methanogens, chemolithoautotrophic anaerobic microorganisms, are considered as ideal model microorganisms for Mars. In light of research presented here, we suggest that at least one methanogen, M. wolfeii, could survive in the deep subsurface environment of Mars.

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

PubMed Central

Hurt, Richard A.; Robeson, Michael S.; Shakya, Migun; Moberly, James G.; Vishnivetskaya, Tatiana A.; Gu, Baohua; Elias, Dwayne A.

2014-01-01

Despite over three decades of progress, extraction of high molecular weight (HMW) DNA from high clay soils or iron oxide cemented clay has remained challenging. HMW DNA is desirable for next generation sequencing as it yields the most comprehensive coverage. Several DNA extraction procedures were compared from samples that exhibit strong nucleic acid adsorption. pH manipulation or use of alternative ion solutions offered no improvement in nucleic acid recovery. Lysis by liquid N2 grinding in concentrated guanidine followed by concentrated sodium phosphate extraction supported HMW DNA recovery from clays high in iron oxides. DNA recovered using 1 M sodium phosphate buffer (PB) as a competitive desorptive wash was 15.22±2.33 µg DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25 µg DNA/g clay with the Powerlyzer system (MoBio). Increasing PB concentration in the lysis reagent coincided with increasing DNA fragment length during initial extraction. Rarefaction plots of 16S rRNA (V1–V3 region) pyrosequencing from A-horizon and clay soils showed an ∼80% and ∼400% larger accessed diversity compared to the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more operational taxonomic units (OTU) recovered. PMID:25033199

Fire Events and Soil Thermometry: The Applications of Clay Chemistry for Tracing Temperature Changes in Soils and Sediments Below Surface Fires

NASA Astrophysics Data System (ADS)

Watson, E.; Werts, S. P.; Gelabert, M.

2016-12-01

Fires in the natural environment affect the physical, chemical, and biological properties of soils. However, fires may also alter the mineralogy of the geologic material in which it comes in contact. Previous experiments on high temperature alteration of clays indicate that dehydration, oxidation, and hydroxylation in clay minerals can occur progressively in that order at increasing temperatures up to 500°C. It is also well known that wildfire events can heat soils to these temperature ranges several centimeters deep. In this experiment, alterations in clay chemistry were used as a tool to investigate fire intensity along with the changing morphology of clay minerals. For data collection, small camp fires were set in York County, SC and temperatures were recorded using a datalogger system to 5 cm deep during the fire event. Control samples were taken adjacent to the fires to compare the changing morphology of the minerals when heated. Powder x-ray diffraction and scanning electron microscopy were used to identify the clay mineralogy. The clay from soil samples was identified as hydrous kaolinite, anhydrous kaolinite, and varying types of goethite. To observe the dehydration, oxidation, and hydroxylation of clay minerals, scanning electron microscopy with emission dispersive spectroscopy was used to identify the O/cation ratios present, which would indicate changes in the oxidation state of the clay minerals. By mapping the changes in O/cation ratios with temperature in silicates, we are able to trace the temperature of the sediments during fire events. This research suggests it may be possible to utilize these geochemical trends to aid in soil and sediment temperature investigations in both archeological and modern soil and surface process investigations.

Observation to Theory in Deep Subsurface Microbiology Research: Can We Piece It Together?

NASA Astrophysics Data System (ADS)

Colwell, F. S.; Thurber, A. R.

2016-12-01

Three decades of observations of microbes in deep environments have led to startling discoveries of life in the subsurface. Now, a few theoretical frameworks exist that help to define Stygian life. Temperature, redox gradients, productivity (e.g., in the overlying ocean), and microbial power requirements are thought to determine the distribution of microbes in the subsurface. Still, we struggle to comprehend the spatial and temporal spectra of Earth processes that define how deep microbe communities survive. Stommel diagrams, originally used to guide oceanographic sampling, may be useful in depicting the subsurface where microbial communities are impacted by co-occurring spatial and temporal phenomena that range across exponential scales. Spatially, the geological settings that influence the activity and distribution of microbes range from individual molecules or minerals all the way up to the planetary-scale where geological formations, occupying up to 105 km3, dictate the bio- and functional geography of microbial communities. Temporally, life in the subsurface may respond in time units familiar to humans (e.g., seconds to days) or to events that unfold over hundred millennial time periods. While surface community dynamics are underpinned by solar and lunar cycles, these cycles only fractionally dictate survival underground where phenomena like tectonic activity, isostatic rebound, and radioactive decay are plausible drivers of microbial life. Geological or planetary processes that occur on thousand or million year cycles could be uniquely important to microbial viability in the subsurface. Such an approach aims at a holistic comprehension of the interaction of Earth system dynamics with microbial ecology.

Geophysical and physical measurements applied to characterize an area prone to quick clay landslides in SW Sweden

NASA Astrophysics Data System (ADS)

Salas-Romero, Silvia; Malehmir, Alireza; Snowball, Ian; Lougheed, Bryan C.; Hellqvist, Magnus

2014-05-01

The study of quick clay landslides in Nordic countries, such as Sweden and Norway, is wide and varied. However, the occurrence of catastrophes like those in Munkedal, Sweden, in 2006, demands a more complete characterization of these materials and their extensiveness. The objectives of this research are mainly focused on obtaining information about the properties and behavior of quick clays in an area prone to landslides in southwestern Sweden. Two fieldwork campaigns were carried out in 2011 and 2013, using methods such as 2D and 3D P-wave and S-wave seismic, geoelectrics, controlled-source and radio-magnetotellurics, ground gravity, as well as downhole geophysics (measuring fluid temperature and conductivity, gamma radiation, sonic velocity and resistivity) performed in three boreholes located in the study area. Drill cores recovered using the SONIC technique provided samples for paleontological information, as well as laboratory measurements of physical properties of the subsurface materials to a maximum subsurface depth of about 60 m. The laboratory measurements included grain size analysis, mineral magnetic properties, electric conductivity, pH, salinity, total dissolved solids, x-ray fluorescence (XRF), and a reconnaissance study of the fossil content. A correlation study of the downhole geophysical measurements, 2D seismic sections located at the intersection with the boreholes and the sample observations indicated that the presence of quick clays is associated with contacts with coarse-grained materials. Although the PVC casing of the boreholes interferes with the sonic and resistivity measurements, the perforated parts of the PVC casing show significant changes. The most important variations in magnetic susceptibility and conductivity mostly coincide with these coarse-grained layers, supporting the seismic data. Coarse-grained layers are characterized by enhanced magnetic susceptibility and conductivity. Grain size analysis results on subsamples from the deepest borehole (the one closer to the river) correlate with changes in the natural gamma measurements. Overall, the fine sediments dominate over the coarser ones, and clay and fine silt are found to be the most abundant. The preliminary paleontological observations indicate that the most of the sediments were formed in a glaciomarine environment. Additionally, XRF measurements were performed on subsamples from the deepest borehole, indicating high Cl/V values (a good salinity indicator) in the thickest coarse-grained layer. In conclusion, all the collected data show a comprehensive description of the subsurface in the area. The characteristics of the observed quick clays will offer more information about these materials in Sweden, expanding our knowledge about them and assisting in risk assessments in similar areas where similar geohazards are present. Future work will be geared towards processing of the data collected in 2013, including a seismic line across the river, which will complement and extend the study area. New fieldwork campaigns and inversion of surface wave data will improve the interpretation of the shallow subsurface. Furthermore, geotechnical data from the site, obtained by the Swedish Geotechnical Institute, will be used to define and support the presence of quick clays in the area. Acknowledgements: GWB-SEG, Formas, SGU, LIAG, SGI, PAN and graduate and undergraduate students from Uppsala University for their fieldwork contribution.

Sporadic Groundwater Upwelling in Deep Martian Craters: Evidence for Lacustrine Clays and Carbonates

NASA Technical Reports Server (NTRS)

Michalski, J. R.; Rogers, A. D.; Wright, S. P.; Niles, P.; Cuadros, J.

2012-01-01

While the surface of Mars may have had an active hydrosphere early in its history [1], it is likely that this water retreated to the subsurface early on due to loss of the magnetic field and early atmosphere [2]. This likely resulted in the formation of two distinct aqueous regimes for Mars from the Late Noachian onward: one dominated by redistribution of surface ice and occasional melting of snow/ice [3], and one dominated by groundwater activity [4]. The excavation of alteration minerals from deep in the crust by impact craters points to an active, ancient, deep hydrothermal system [5]. Putative sapping features [6] may occur where the groundwater breached the surface. Upwelling groundwater may also have played a critical role in the formation of massive, layered, cemented sediments in Sinus Meridiani [7,8], in the Valles Marineris [9], and possibly in Gale Crater [10], where the Curiosity Rover will land later this year. Understanding the past distribution, geochemistry, and significance of groundwater on Mars is critical to untangling the origins of deep alteration minerals, Hesperian sulfate deposits, and crater fill deposits at Gale Crater or in other locations.

Microbial Life of North Pacific Oceanic Crust

NASA Astrophysics Data System (ADS)

Schumann, G.; Koos, R.; Manz, W.; Reitner, J.

2003-12-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed reactions that influence the geophysical properties of these environments. Drilling into 45-Ma oceanic basaltic crust in a deepwater environment during ODP Leg 200 provided a promising opportunity to explore the abundance, diversity and activity of micro-organisms. The combined use of culture-independent molecular phylogenetic analyses and enrichment culture techniques is an advantageous approach in investigating subsurface microbial ecosystems. Enrichment culture methods allow the evaluation of potential activities and functions. Microbiological investigations revealed few aerobic cultivable, in part hitherto unknown, micro-organisms in deep submarine sediments and basaltic lava flows. 16S rDNA sequencing of isolates from sediment revealed the next relatives to be members of the genera Halomonas, Pseudomonas, and Lactobacillus. Within the Pseudomonadaceae the closest relative is Acinetobacter sp., which was isolated from a deep subsurface environment. The next phylogenetical relatives within the Halomonadaceae are bacteria typically isolated from Soda lakes, which are considered as model of early life conditions. Interestingly, not only sediment bacteria could be obtained in pure culture. Aerobic strains could also be successfully isolated from the massive tholeiitic basalt layer at a depth of 76.16 mbsf (46 m below the sediment/basement contact). These particular isolates are gram-positive with low G+C content of DNA, phylogenetically affiliated to the phylum Firmicutes. The closest neighbors are e.g. a marine Bacillus isolated from the Gulf of Mexico and a low G+C gram-positive bacterium, which belongs to the microbial flora in the deepest sea mud of the Mariana Trench, isolated from a depth of 10,897 m. Based on the similarity values, the isolates represent hitherto undescribed species of the deep biosphere. Molecular microbial diversity is currently determined by cloning und comparative 16S rRNA gene analyses. The first results will also be presented. In summary, the low number of isolates, cultivated under aerobic conditions, is in good agreement with the common opinion that most of the bacteria within the deep biosphere are anaerobic. Thus, studies of microbial community structure in solid geological materials are feasible and constitute further evidence that continuing microbiological activity in the challenging exploration of the deep sub-seafloor biosphere environment is absolutely promising.

The subsurface record for the Anthropocene based on the global analysis of deep wells

NASA Astrophysics Data System (ADS)

Rose, K.

2016-12-01

While challenges persist in the characterization of Earth's subsurface, over two centuries of exploration resulting in more than six million deep wellbores, offer insights into these systems. Characteristics of the subsurface vary and can be analyzed on a variety of spatial scales using geospatial tools and methods. Characterization and prediction of subsurface properties, such as depth, thickness, porosity, permeability, pressure and temperature, are important for models and interpretations of the subsurface. Subsurface studies contribute to insights and understanding of natural system but also enable predictions and assessments of subsurface resources and support environmental and geohazard assessments. As the geo-data science landscape shifts, becoming more open, there are increasing opportunities to fill knowledge gaps, mine large, interrelated datasets, and develop innovative methods to improve our understanding of the subsurface and the impacts of its exploration. In this study, a global dataset of more than 6,000,000 deep subsurface wells has been assembled using ArcGIS and Access, which reflects to a first order, the cumulative representation of over two centuries of drilling. Wellbore data, in general represent the only portal for direct measurement and characterization of deep subsurface properties. As human engineering of the subsurface evolves from a focus on hydrocarbon resource development to include subsurface waste product disposal (e.g. CO2, industrial waste, etc) and production of other deep subsurface resources, such as heat and water resources, there is the increasing need to improve characterization techniques and understand local and global ramifications of anthropogenic interaction with the subsurface. Data and geospatial analyses are reviewed to constrain the extent to which human interactions, not just with Earth's surface systems, atmospheric and geologic, but subsurface systems will result in an enduring signature of human influences on the planet. Specifically, the extent and enduring signature of subsurface interactions with the planet, utilizing the four-dimensional, spatial and temporal, record for known deep wellbores is utilized.

Diagenetic contrast of sandstones in hydrocarbon prospective Mesozoic rift basins (Ethiopia, UK, USA)

NASA Astrophysics Data System (ADS)

Wolela, A.

2014-11-01

Diagenetic studied in hydrocarbon-prospective Mesozoic rift basins were carried out in the Blue Nile Basin (Ethiopia), Ulster Basin (United Kingdom) and Hartford Basin (United States of America). Alluvial fan, single and amalgamated multistorey meandering and braided river, deep and shallow perennial lake, shallow ephemeral lake, aeolian and playa mud-flat are the prominent depositional environments. The studied sandstones exhibit red bed diagenesis. Source area geology, depositional environments, pore-water chemistry and circulation, tectonic setting and burial history controlled the diagenetic evolution. The diagenetic minerals include: facies-related minerals (calcrete and dolocrete), grain-coating clay minerals and/or hematite, quartz and feldspar overgrowths, carbonate cements, hematite, kaolinite, illite-smectite, smectite, illite, chlorite, actinolite, laumontite, pyrite and apatite. Diversity of diagenetic minerals and sequence of diagenetic alteration can be directly related to depositional environment and burial history of the basins. Variation in infiltrated clays, carbonate cements and clay minerals observed in the studied sandstones. The alluvial fan and fluviatile sandstones are dominated by kaolinite, illite calcite and ferroan calcite, whereas the playa and lacustrine sandstones are dominated by illite-smectite, smectite-chlorite, smectite, chlorite, dolomite ferroan dolomite and ankerite. Albite, pyrite and apatite are predominantly precipitated in lacustrine sandstones. Basaltic eruption in the basins modified mechanically infiltrated clays to authigenic clays. In all the studied sandstones, secondary porosity predominates over primary porosity. The oil emplacement inhabited clay authigenesis and generation of secondary porosity, whereas authigenesis of quartz, pyrite and apatite continued after oil emplacement.

Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales.

PubMed

Daly, Rebecca A; Borton, Mikayla A; Wilkins, Michael J; Hoyt, David W; Kountz, Duncan J; Wolfe, Richard A; Welch, Susan A; Marcus, Daniel N; Trexler, Ryan V; MacRae, Jean D; Krzycki, Joseph A; Cole, David R; Mouser, Paula J; Wrighton, Kelly C

2016-09-05

Hydraulic fracturing is the industry standard for extracting hydrocarbons from shale formations. Attention has been paid to the economic benefits and environmental impacts of this process, yet the biogeochemical changes induced in the deep subsurface are poorly understood. Recent single-gene investigations revealed that halotolerant microbial communities were enriched after hydraulic fracturing. Here, the reconstruction of 31 unique genomes coupled to metabolite data from the Marcellus and Utica shales revealed that many of the persisting organisms play roles in methylamine cycling, ultimately supporting methanogenesis in the deep biosphere. Fermentation of injected chemical additives also sustains long-term microbial persistence, while thiosulfate reduction could produce sulfide, contributing to reservoir souring and infrastructure corrosion. Extensive links between viruses and microbial hosts demonstrate active viral predation, which may contribute to the release of labile cellular constituents into the extracellular environment. Our analyses show that hydraulic fracturing provides the organismal and chemical inputs for colonization and persistence in the deep terrestrial subsurface.

Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daly, Rebecca A.; Borton, Mikayla A.; Wilkins, Michael J.

Hydraulic fracturing is the industry standard for extracting hydrocarbons from shale formations. Attention has been paid to the economic benefits and environmental impacts of this process, yet the biogeochemical changes induced in the deep subsurface are poorly understood. Recent single-gene investigations revealed that halotolerant microbial communities were enriched after hydraulic fracturing. Here the reconstruction of 31 unique genomes coupled to metabolite data from the Marcellus and Utica shales revealed that methylamine cycling supports methanogenesis in the deep biosphere. Fermentation of injected chemical additives also sustains long-term microbial persistence, while sulfide generation from thiosulfate represents a poorly recognized corrosion mechanism inmore » shales. Extensive links between viruses and microbial hosts demonstrate active viral predation, which may contribute to the release of labile cellular constituents into the extracellular environment. Our analyses show that hydraulic fracturing provides the organismal and chemical inputs for colonization and persistence in the deep terrestrial subsurface.« less

Factors Effecting the Fate and Transport of CL-20 in the Vadose Zone and Groundwater: Final Report 2002 - 2004 SERDP Project CP-1255

DOE Office of Scientific and Technical Information (OSTI.GOV)

Szecsody, James E.; Riley, Robert G.; Devary, Brooks J.

2005-06-01

This SERDP-funded project was initiated to investigate the fate of CL-20 in the subsurface environment, with a focus on identification and quantification of geochemical and microbial reactions of CL-20. CL-20 can be released to the surface and subsurface terrestrial environment by: a) manufacturing processes, b) munition storage, and c) use with low order detonation or unexploded ordnance. The risk of far-field subsurface migration was assessed through labora-tory experiments with a variety of sediments and subsurface materials to quantify processes that control CL-20 sorption-limited migration and degradation. Results of this study show that CL-20 will exhibit differing behavior in the subsurfacemore » terrestrial environment: 1. CL-20 on the sediment surface will photodegrade and interact with plants/animals (described in other SERDP projects CU 1254, 1256). CL-20 will exhibit greater sorption in humid sediments to organic matter. Transport will be solubility limited (i.e., low CL-20 aqueous solubility). 2. CL-20 infiltration into soils (<2 m) from spills will be subject to sorption to soil organic matter (if present), and low to high biodegradation rates (weeks to years) depending on the microbial population (greater in humid environment). 3. CL-20 in the vadose zone (>2 m) will be, in most cases, subject to low sorption and low degradation rates, so would persist in the subsurface environment and be at risk for deep migration. Low water content in arid regions will result in a decrease in both sorption and the degradation rate. Measured degradation rates in unsaturated sediments of years would result in significant subsurface migration distances. 4. CL-20 in groundwater will be subject to some sorption but likely very slow degradation rates. CL-20 sorption will be greater than RDX. Most CL-20 degradation will be abiotic (ferrous iron and other transition metals), because most deep subsurface systems have extremely low natural microbial populations. Degradation rates will range from weeks (iron reducing systems) to years. Although CL-20 will move rapidly through most sediments in the terrestrial environment, subsurface remediation can be utilized for cleanup. Transformation of CL-20 to intermediates can be rapidly accomplished under: a) reducing conditions (CL-20 4.1 min. half-life, RDX 18 min. half-life), b) alkaline (pH >10) conditions, and c) bioremediation with added nutrients. CL-20 degradation to intermediates may be insufficient to mitigate environmental impact, as the toxicity of many of these compounds is unknown. Biostimulation in oxic to reducing systems by carbon and nutrient addition can mineralize CL-20, with the most rapid rates occurring under reducing conditions.« less

Groundwater mixing at fracture intersections triggers massive iron-rich microbial mats

NASA Astrophysics Data System (ADS)

Bochet, O.; Le Borgne, T.; Bethencourt, L.; Aquilina, L.; Dufresne, A.; Pédrot, M.; Farasin, J.; Abbott, B. W.; Labasque, T.; Chatton, E.; Lavenant, N.; Petton, C.

2017-12-01

While most freshwater on Earth resides and flows in groundwater systems, these deep subsurface environments are often assumed to have little biogeochemical activity compared to surface environments. Here we report a massive microbial mat of iron-oxidizing bacteria, flourishing 60 meters below the surface, far below the mixing zone where most microbial activity is believed to occur. The abundance of microtubular structures in the mat hinted at the prevalence of of Leptothrix ochracea, but metagenomic analysis revealed a diverse consortium of iron-oxidizing bacteria dominated by unknown members of the Gallionellaceae family. This deep biogeochemical hot spot formed at the intersection of bedrock fractures, which maintain redox gradients by mixing water with different residence times and chemical compositions. Using measured fracture properties and hydrological conditions we developed a quantitative model to simulate the reactive zone where such deep hot spots could occur. While seasonal fluctuations are generally thought to decrease with depth, we found that meter-scale changes in water table level moved the depth of the reactive zone hundreds of meters because the microaerophilic threshold for ironoxidizers is highly sensitive to changes in mixing rates at fracture intersections. These results demonstrate that dynamic microbial communities can be sustained deep below the surface in bedrock fractures. Given the ubiquity of fractures at multiple scales in Earth's subsurface, such deep hot spots may strongly influence global biogeochemical cycles.

Evidence of Late Pliocene-Early Pleistocene marine environments in the deep subsurface of the Lihue Basin, Kauai, Hawaii

USGS Publications Warehouse

Izuka, S.K.; Resig, J.M.

2008-01-01

Cuttings recovered from two deep exploratory wells in the Lihue Basin, Kauai, Hawaii, include fossiliferous marine deposits that offer an uncommon opportunity to study paleoenvironments from the deep subsurface in Hawaii and interpret the paleogeography and geologic history of Kauai. These deposits indicate that two marine incursions gave rise to protected shallow-water, low-energy embayments in the southern part of the Lihue Basin in the late Pliocene-early Pleistocene. During the first marine incursion, the embayment was initially zoned, with a variable-salinity environment nearshore and a normal-marine reef environment offshore. The offshore reef environment eventually evolved to a nearshore, variable-salinity environment as the outer part of the embayment shallowed. During the second marine incursion, the embayment had normal-marine to hypersaline conditions, which constitute a significant departure from the variable-salinity environment present during the first marine incursion. Large streams draining the southern Lihue Basin are a likely source of the freshwater that caused the salinity fluctuations evident in the fossils from the first marine incursion. Subsequent volcanic eruptions produced lava flows that buried the embayment and probably diverted much of the stream flow in the southern Lihue Basin northward, to its present point of discharge north of Kalepa Ridge. As a result, the embayment that formed during the second marine incursion received less freshwater, and a normal-marine to hypersaline environment developed. The shallow-water marine deposits, currently buried between 86 m and 185 m below present sea level, have implications for regional tectonics and global eustasy. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments

PubMed Central

2016-01-01

Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736

Molecular hydrogen: An abundant energy source for bacterial activity in nuclear waste repositories

NASA Astrophysics Data System (ADS)

Libert, M.; Bildstein, O.; Esnault, L.; Jullien, M.; Sellier, R.

A thorough understanding of the energy sources used by microbial systems in the deep terrestrial subsurface is essential since the extreme conditions for life in deep biospheres may serve as a model for possible life in a nuclear waste repository. In this respect, H 2 is known as one of the most energetic substrates for deep terrestrial subsurface environments. This hydrogen is produced from abiotic and biotic processes but its concentration in natural systems is usually maintained at very low levels due to hydrogen-consuming bacteria. A significant amount of H 2 gas will be produced within deep nuclear waste repositories, essentially from the corrosion of metallic components. This will consequently improve the conditions for microbial activity in this specific environment. This paper discusses different study cases with experimental results to illustrate the fact that microorganisms are able to use hydrogen for redox processes (reduction of O 2, NO3-, Fe III) in several waste disposal conditions. Consequences of microbial activity include: alteration of groundwater chemistry and shift in geochemical equilibria, gas production or consumption, biocorrosion, and potential modifications of confinement properties. In order to quantify the impact of hydrogen bacteria, the next step will be to determine the kinetic rate of the reactions in realistic conditions.

Potential Physiologies of Deep Branches on the Tree of Life with Deep Subsurface Samples from IODP Leg 347: Baltic Sea Paleoenvironment

NASA Astrophysics Data System (ADS)

Lloyd, K. G.; Bird, J. T.; Shumaker, A.

2014-12-01

Very little is known about how evolutionary branches that are distantly related to cultured microorganisms make a living in the deep subsurface marine environment. Here, sediments are cut-off from surface inputs of organic substrates for tens of thousands of years; yet somehow support a diverse population of microorganisms. We examined the potential metabolic and ecological roles of uncultured archaea and bacteria in IODP Leg 347: Baltic Sea Paleoenvironment samples, using quantitative PCR holes 60B, 63E, 65C, and 59C and single cell genomic analysis for hole 60B. We quantified changes in total archaea and bacteria, as well as deeply-branching archaeal taxa with depth. These sediment cores alternate between high and low salinities, following a glacial cycle. This allows changes in the quantities of these groups to be placed in the context of potentially vastly different organic matter sources. In addition, single cells were isolated, and their genomes were amplified and sequenced to allow a deeper look into potential physiologies of uncultured deeply-branching organisms found up to 86 meters deep in marine sediments. Together, these data provide deeper insight into the relationship between microorganisms and their organic matter substrates in this extreme environments.

Single cell genomic study of Dehalococcoidites in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Spormann, A. M.

2013-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites Dhc were originally discovered as the key microorganisms mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene. Molecular and genomic studies on their key enzymes for energy conservation, reductive dehalogenases rdh, have provided evidence for ubiquitous horizontal gene transfer. A pioneering study by Futagami et al. discovered novel putative rdh phylotypes in sediments from the Pacific, revealing an unknown and surprising abundance of rdh genes in pristine habitats. The frequent detection of Dhc-related 16S rRNA genes from these environments implied the occurrence of dissimilatory dehalorespiration in marine subsurface sediments, however, pristine Dhc could never be linked to this activity. Despite being ubiquitous in those environments, metabolic life style or ecological function of Dhc in the absence of anthropogenic contaminants is still completely unknown. We therefore analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site by a single cell genomic (SGC) approach. We present for the first time data on three single Dhc cells, helping to elucidate their role in the poorly understood oligotrophic marine sub-surface environment.

Subsurface and terrain controls on runoff generation in deep soil landscapes

NASA Astrophysics Data System (ADS)

Mallard, John; McGlynn, Brian; Richter, Daniel

2017-04-01

Our understanding of runoff generation in regions characterized by deep, highly weathered soils is incomplete despite the prevalence of this setting worldwide. To address this, we instrumented a first-order watershed in the Piedmont of South Carolina, USA. The Piedmont region of the United States extends east of the Appalachians from Maryland to Alabama, and is home to some of the most rapid population growth in the country. Regional and local relief is modest, although the landscape is highly dissected and local slope can be quite variable. The region's soils are ancient, deeply weathered, and characterized by sharp changes in hydrologic properties due to concentration of clay in the Bt horizon. Despite a mild climate and consistent precipitation, seasonally variable energy availability and deciduous tree cover create a strong evapotranspiration mediated seasonal hydrologic dynamic: while moist soils and extended stream networks are typical of the late fall through spring, relatively dry soils and contracting stream networks emerge in the summer and early fall. To elucidate the control of the complex vertical and planform structure of this region, as well as the strongly seasonal subsurface hydrology, on runoff generation, we installed a network of nested, shallow groundwater wells across an ephemeral to first-order watershed to continuously measure internal water levels. We also recorded local precipitation and discharge at the outlet of this watershed, a similar adjacent watershed, and in the second to third order downstream watershed. Subsurface water dynamics varied spatially, vertically, and seasonally. Shallow depths and landscape positions with minimal contributing area exhibited flashier dynamics comparable to the stream hydrographs while positions with more contributing area exhibited relatively muted dynamics. Most well positions showed minimal response to precipitation throughout the summer, and even occasionally observed response rarely co-occurred with streamflow generation. Our initial findings suggest that characterizing the terrain of a watershed must be coupled with the subsurface soil hydrology in order to understand spatiotemporal patterns of streamflow generation in regions possessing both complex vertical structure and terrain.

Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere.

PubMed

Fullerton, Heather; Moyer, Craig L

2016-05-15

Chloroflexi small-subunit (SSU) rRNA gene sequences are frequently recovered from subseafloor environments, but the metabolic potential of the phylum is poorly understood. The phylum Chloroflexi is represented by isolates with diverse metabolic strategies, including anoxic phototrophy, fermentation, and reductive dehalogenation; therefore, function cannot be attributed to these organisms based solely on phylogeny. Single-cell genomics can provide metabolic insights into uncultured organisms, like the deep-subsurface Chloroflexi Nine SSU rRNA gene sequences were identified from single-cell sorts of whole-round core material collected from the Okinawa Trough at Iheya North hydrothermal field as part of Integrated Ocean Drilling Program (IODP) expedition 331 (Deep Hot Biosphere). Previous studies of subsurface Chloroflexi single amplified genomes (SAGs) suggested heterotrophic or lithotrophic metabolisms and provided no evidence for growth by reductive dehalogenation. Our nine Chloroflexi SAGs (seven of which are from the order Anaerolineales) indicate that, in addition to genes for the Wood-Ljungdahl pathway, exogenous carbon sources can be actively transported into cells. At least one subunit for pyruvate ferredoxin oxidoreductase was found in four of the Chloroflexi SAGs. This protein can provide a link between the Wood-Ljungdahl pathway and other carbon anabolic pathways. Finally, one of the seven Anaerolineales SAGs contains a distinct reductive dehalogenase homologous (rdhA) gene. Through the use of single amplified genomes (SAGs), we have extended the metabolic potential of an understudied group of subsurface microbes, the Chloroflexi These microbes are frequently detected in the subsurface biosphere, though their metabolic capabilities have remained elusive. In contrast to previously examined Chloroflexi SAGs, our genomes (several are from the order Anaerolineales) were recovered from a hydrothermally driven system and therefore provide a unique window into the metabolic potential of this type of habitat. In addition, a reductive dehalogenase gene (rdhA) has been directly linked to marine subsurface Chloroflexi, suggesting that reductive dehalogenation is not limited to the class Dehalococcoidia This discovery expands the nutrient-cycling and metabolic potential present within the deep subsurface and provides functional gene information relating to this enigmatic group. Copyright © 2016 Fullerton and Moyer.

Aseptically Sampled Organics in Subsurface Rocks From the Mars Analog Rio Tinto Experiment: An Analog For The Search for Deep Subsurface Life on Mars.}

NASA Astrophysics Data System (ADS)

Bonaccorsi, R.; Stoker, C. R.

2005-12-01

The subsurface is the key environment for searching for life on planets lacking surface life. Subsurface ecosystems are of great relevance to astrobiology including the search for past/present life on Mars. The surface of Mars has conditions preventing current life but the subsurface might preserve organics and even host some life [1]. The Mars-Analog-Rio-Tinto-Experiment (MARTE) is performing a simulation of a Mars drilling experiment. This comprises conventional and robotic drilling of cores in a volcanically-hosted-massive-pyrite deposit [2] from the Iberian Pyritic Belt (IBP) and life detection experiments applying anti-contamination protocols (e.g., ATP Luminometry assay). The RT is considered an important analog of the Sinus Meridiani site on Mars and an ideal model analog for a deep subsurface Martian environment. Former results from MARTE suggest the existence of a relatively complex subsurface life including aerobic and anaerobic chemoautotrophs and strict anaerobic methanogens sustained by Fe and S minerals in anoxic conditions. A key requirement for the analysis of a subsurface sample on Mars is a set of simple tests that can help determine if the sample contains organic material of biological origin, and its potential for retaining definitive biosignatures. We report here on the presence of bulk organic matter Corg (0.03-0.05 Wt%), and Ntot (0.01-0.04 Wt%) and amount of measured ATP (Lightning MVP, Biocontrol) in weathered rocks (tuffs, gossan, pyrite stockwork from Borehole #8; >166m). This provides key insight on the type of trophic system sustaining the subsurface biosphere (i.e., heterotrophs vs. autotrophs) at RT. ATP data (Relative-Luminosity-Units, RLU) provide information on possible contamination and distribution of viable biomass with core depth (BH#8, and BH#7, ~3m). Avg. 153 RLU, i.e., surface vs. center of core, suggest that cleaness/sterility can be maintained when using a simple sterile protocol under field conditions. Results from this research will support future drilling mission planned on Mars. [1] Boston, P.J., et al., 1992. Icarus 95,300-308; [2] Leistel et al., 1998.

Microbial activity in the marine deep biosphere: progress and prospects.

PubMed

Orcutt, Beth N; Larowe, Douglas E; Biddle, Jennifer F; Colwell, Frederick S; Glazer, Brian T; Reese, Brandi Kiel; Kirkpatrick, John B; Lapham, Laura L; Mills, Heath J; Sylvan, Jason B; Wankel, Scott D; Wheat, C Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists-all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these "extreme" environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) "theme team" on microbial activity (www.darkenergybiosphere.org).

Microbial activity in the marine deep biosphere: progress and prospects

PubMed Central

Orcutt, Beth N.; LaRowe, Douglas E.; Biddle, Jennifer F.; Colwell, Frederick S.; Glazer, Brian T.; Reese, Brandi Kiel; Kirkpatrick, John B.; Lapham, Laura L.; Mills, Heath J.; Sylvan, Jason B.; Wankel, Scott D.; Wheat, C. Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists—all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these “extreme” environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) “theme team” on microbial activity (www.darkenergybiosphere.org). PMID:23874326

Sonar imaging of flooded subsurface voids phase I : proof of concept : executive summary report.

DOT National Transportation Integrated Search

2011-04-15

Damage to Ohio highways due to subsidence : or collapse of subsurface voids is a serious : problem for the Ohio Department of : Transportation (ODOT). These voids have : often resulted from past underground mining : activities for coal, clay, limesto...

Improved correlation between Texas cone penetrometer blow count and undrained shear strength of soft clays.

DOT National Transportation Integrated Search

2009-01-01

The objective of this project was to develop an improved correlation between Texas Cone Penetrometer (TCP) : blow count and undrained shear strength for soft, clay soils in the upper approximately 30 feet of the ground. Subsurface : explorations were...

Active subsurface cellular function in the Baltic Sea Basin, IODP Exp 347

NASA Astrophysics Data System (ADS)

Reese, B. K.; Zinke, L. A.; Bird, J. T.; Lloyd, K. G.; Marshall, I.; Amend, J.; Jørgensen, B. B.

2016-12-01

The Baltic Sea Basin is a unique depositional setting that has experienced periods of glaciation and deglaciation as a result of global temperature fluctuations over the course of several hundred thousand years. This has resulted in laminated sediments formed during periods with strong permanent salinity stratification. The high sedimentation rates (100-500 cm/1000 y) make this an ideal setting to understand the microbial structure of a deep biosphere community in a high-organic matter environment. The responses of deep sediment microbial communities to variations in conditions during and after deposition are poorly understood. Samples were collected through scientific drilling during the International Ocean Discovery Program (IODP) Expedition 347 on board the Greatship Manisha, September-November 2013. We examined the active microbial community structure using the 16S rRNA gene transcript and active functional genes through metatranscriptome sequencing. Major biogeochemical shifts have been observed in response to the depositional history between the limnic, brackish, and marine phases. The microbial community structure in the BSB is diverse and reflective of the unique changes in the geochemical profile. These data further define the existence life in the deep subsurface and the survival mechanisms required for this extreme environment.

Microbial diversity in Cenozoic sediments recovered from the Lomonosov Ridge in the Central Arctic basin.

PubMed

Forschner, Stephanie R; Sheffer, Roberta; Rowley, David C; Smith, David C

2009-03-01

The current understanding of microbes inhabiting deeply buried marine sediments is based largely on samples collected from continental shelves in tropical and temperate latitudes. The geographical range of marine subsurface coring was expanded during the Integrated Ocean Drilling Program Arctic Coring Expedition (IODP ACEX). This expedition to the ice-covered central Arctic Ocean successfully cored the entire 428 m sediment stack on the Lomonosov Ridge during August and September 2004. The recovered cores vary from siliciclastic sediment low in organic carbon (< 0.2%) to organic rich ( approximately 3%) black sediments that rapidly accumulated in the early middle Eocene. Three geochemical environments were characterized based on chemical analyses of porewater: an upper ammonium oxidation zone, a carbonate dissolution zone and a deep (> 200 m below sea floor) sulfate reduction zone. The diversity of microbes within each zone was assessed using 16S rRNA phylogenetic markers. Bacterial 16S rRNA genes were successfully amplified from each of the biogeochemical zones, while archaea was only amplified from the deep sulfate reduction zone. The microbial communities at each zone are phylogenetically different and are most closely related to those from other deep subsurface environments.

Sounding of Groundwater Through Conductive Media in Mars Analog Environments Using Transient Electromagnetics and Low Frequency GPR.

NASA Astrophysics Data System (ADS)

Jernsletten, J. A.; Heggy, E.

2004-05-01

INTRODUCTION: This study compares the use of (diffusive) Transient Electromagnetics (TEM) for sounding of subsurface water in conductive Mars analog environments to the use of (propagative) Ground-Penetrating Radar (GPR) for the same purpose. We show data from three field studies: 1) Radar sounding data (GPR) from the Nubian aquifer, Bahria Oasis, Egypt; 2) Diffusive sounding data (TEM) from Pima County, Arizona; and 3) Shallower sounding data using the Fast-Turnoff TEM method from Peña de Hierro in the Rio Tinto area, Spain. The latter is data from work conducted under the auspices of the Mars Analog Research and Technology Experiment (MARTE). POTENTIAL OF TEM: A TEM survey was carried out in Pima County, Arizona, in January 2003. Data was collected using 100 m Tx loops, a ferrite-cored magnetic coil Rx antenna, and a sounding frequency of 16 Hz. The dataset has ~500 m depth of investigation, shows a ~120 m depth to the water table (confirmed by several USGS test wells in the area), and a conductive (~20-40 Ω m) clay-rich soil above the water table. The Rio Tinto Fast-Turnoff TEM data was collected using 40 m Tx loops, 10 m Rx loops, and a 32 Hz sounding frequency. Note ~200 m depth of investigation and a conductive high at ~80 m depth (interpreted as water table). Data was also collected using 20 m Tx loops (10 m Rx loops) in other parts of the area. Note ~50 m depth of investigation and a conductive high at ~15 m depth (interpreted as subsurface water flow under mine tailings matching surface flows seen coming out from under the tailings, and shown on maps). Both of these interpretations were roughly confirmed by preliminary results from the MARTE ground truth drilling campaign carried out in September and October 2003. POTENTIAL OF GPR: A GPR experiment was carried out in February 2003 in the Bahria Oasis in the western Egyptian desert, using a 2 MHz monostatic GPR, mapping the Nubian Aquifer at depths of 100-900 m, beneath a thick layer of homogenous marine sedimentary quaternary and tertiary structures constituted mainly of highly resistive dry porous dolomite, illinite, limestone and sandstone, given a reasonable knowledge of the local geoelectrical properties of the crust. The GPR was able to map the first interface between the dolomitic limestone and the gravel, while the detection of the deep subsurface water table remains uncertain due to the uncertainties arising from some instrumentational and geoelectrical problems. In locations were the water table was at shallower depths (less then 200 m), but with the presence of very thin layers (less than 0.5 m) of reddish dry clays, the technique failed to probe the moist interface and to map any significant stratigraphy. CONCLUSIONS: GPR excels in resolution, productivity (logistical efficiency) and is well suited for the shallower applications, but is more sensitive to highly conductive layers (result of wave propagation and higher frequencies), and achieves considerably smaller depths of investigation than TEM. The (diffusive) TEM method uses roughly two orders of magnitude lower sounding frequencies than GPR, is less sensitive to highly conductive layers, achieves considerably deeper depths of investigation, and is more suitable for sounding very deep subsurface water. Compared with GPR, TEM suffers for very shallow applications in terms of resolution and logistical efficiency. Fast-Turnoff TEM, with its very early measured time windows, achieves higher resolution than conventional TEM in shallow applications, and somewhat bridges the gap between GPR and TEM in terms of depths of investigation and suitable applications.

On the possibility of galactic cosmic ray-induced radiolysis-powered life in subsurface environments in the Universe.

PubMed

Atri, Dimitra

2016-10-01

Photosynthesis is a mechanism developed by terrestrial life to utilize the energy from photons of solar origin for biological use. Subsurface regions are isolated from the photosphere, and consequently are incapable of utilizing this energy. This opens up the opportunity for life to evolve alternative mechanisms for harvesting available energy. Bacterium Candidatus Desulforudis audaxviator, found 2.8 km deep in a South African mine, harvests energy from radiolysis, induced by particles emitted from radioactive U, Th and K present in surrounding rock. Another radiation source in the subsurface environments is secondary particles generated by galactic cosmic rays (GCRs). Using Monte Carlo simulations, it is shown that it is a steady source of energy comparable to that produced by radioactive substances, and the possibility of a slow metabolizing life flourishing on it cannot be ruled out. Two mechanisms are proposed through which GCR-induced secondary particles can be utilized for biological use in subsurface environments: (i) GCRs injecting energy in the environment through particle-induced radiolysis and (ii) organic synthesis from GCR secondaries interacting with the medium. Laboratory experiments to test these hypotheses are also proposed. Implications of these mechanisms on finding life in the Solar System and elsewhere in the Universe are discussed. © 2016 The Author(s).

On the possibility of galactic cosmic ray-induced radiolysis-powered life in subsurface environments in the Universe

PubMed Central

2016-01-01

Photosynthesis is a mechanism developed by terrestrial life to utilize the energy from photons of solar origin for biological use. Subsurface regions are isolated from the photosphere, and consequently are incapable of utilizing this energy. This opens up the opportunity for life to evolve alternative mechanisms for harvesting available energy. Bacterium Candidatus Desulforudis audaxviator, found 2.8 km deep in a South African mine, harvests energy from radiolysis, induced by particles emitted from radioactive U, Th and K present in surrounding rock. Another radiation source in the subsurface environments is secondary particles generated by galactic cosmic rays (GCRs). Using Monte Carlo simulations, it is shown that it is a steady source of energy comparable to that produced by radioactive substances, and the possibility of a slow metabolizing life flourishing on it cannot be ruled out. Two mechanisms are proposed through which GCR-induced secondary particles can be utilized for biological use in subsurface environments: (i) GCRs injecting energy in the environment through particle-induced radiolysis and (ii) organic synthesis from GCR secondaries interacting with the medium. Laboratory experiments to test these hypotheses are also proposed. Implications of these mechanisms on finding life in the Solar System and elsewhere in the Universe are discussed. PMID:27707907

Feeding a subsurface biosphere: radiolysis and abiogenic energy sources

NASA Astrophysics Data System (ADS)

Onstott, T.

Noble gas analyses of ground water collected from the deep, fractured, basaltic andesite and quartzite Archean strata in South Africa suggest subsurface residence times ranging from tens to hundreds of millions of years. Hydraulically isolated compartments of highly saline water contain hundreds of μM concentrations of gas comprised primarily of C1-4 hydrocarbons, H2 and He, with minor Ar and N .2 Carbon and hydrogen isotopic analyses of the hydrocarbons suggest an abiogenic origin com atible with surface catalysed reductive assimilation (i.e. Fischer-Tropschp synthesis). H2 and He data suggest that the H2 is generated by subsurface radiolysis of water. One sample of a saline, isolated water/gas pocket agrees exactly with that predicted by radioactive decay of U, Th, K in the host rock and indicates a subsurface H2 production rate of 0.1 to 1 nM/yr. Other samples yielded less H2 than predicted and require a sink for this H2 . Possible sinks include microbial H2 oxidation and abiotic formation of hydrocarbons at rates slightly less than the H2 production rate. Highly diffusive H2 is essential for life in deep subsurface environments where only trace amounts of organic carbon exist. Lithoautotrophic microbes can acquire energy from the redox reactions involving H2 with other electron acceptors (Fe3 +, SO4 2 - or CO2 ), to synthesis organic carbon and can be fully independent of solar-driven photosynthesis. The microbial abundance in many of these ground water samples, however, is below our detection limit (<5000 cells/ml). This contrasts with shallow sedimentary aquifers where H2 levels of tens of nM are regulated by the coexistence of autotrophs/lithotrophs and heterotrophs for maximum efficiency of H2 utilization. The excessive H2 found in deep crustal environments implies that these microbial ecosystems are electron-acceptor and or substrate limited. The oxidants generated by water radiolysis interact with the reduced solid phases in the rock matrix, e.g. pyrite, producing potential electron acceptors, e.g. Fe3 +, that may be readily available for consumption by microbial communities than H . Nitrogen doesn't appear to be2 limited, because ammonia concentrations range upwards to tens of μM, but its origin remains a mystery. The unused H2 , CH4 and He continue to migrate upward to shallow aquifers. Microbial H2 oxidation may dominate over Fischer-Tropsch reactions in crustal environments where formation temperatures are <120o C; and vice versa for deeper crustal environments. This H2 cycle should be present on extraterrestrial bodies, producing potential chemical energy and crustal scale diffusive fluxes from the interaction subsurface ice/water and radiogenic decay.

Subsurface material identification and sensor selection

NASA Astrophysics Data System (ADS)

T, H.; Reghunadh, R.; Ramesh, M. V.

2017-12-01

In India, most of the landslides occur during monsoon season and causes huge loss of life and property. Design of an early warning system for highly landslide prone area will reduce losses to a great extent. The in-situ monitoring systems needs deployment of several sensors inside a borehole for monitoring a particular slope. Amrita Center for Wireless Networks and Applications (AmritaWNA), Amrita University has designed, developed and deployed a Wireless Sensor Network (WSN) for real time landslide monitoring using geotechnical instruments and sensors like rain gauge, moisture sensor, piezometer, strain gauge, tilt meter and geophone inside a Deep Earth Probe (DEP) at different locations. These sensors provide point measurements of the subsurface at a higher accuracy. Every landslide prone terrain is unique with respect to its geology, hydrological conditions, meteorological conditions, velocity of movement etc. The decision of installing different geotechnical instruments in a landslide prone terrain is a crucial step to be considered. Rain gauge, moisture sensor, and piezometer are usually used in clay rich areas to sense the moisture and pore pressure values. Geophone and Crack meter are instruments used in rocky areas to monitor cracks and vibrations associated with a movement. Inclinometer and Strain gauge are usually placed inside a casing and can be used in both rocky and soil areas. In order to place geotechnical instruments and sensors at appropriate places Electrical Resistivity Tomography (ERT) method can be used. Variation in electrical resistivity values indicate the changes in composition, layer thickness, or contaminant levels. The derived true resistivity image can be used for identifying the type of materials present in the subsurface at different depths. We have used this method for identifying the type of materials present in our site at Chandmari (Sikkim). Fig 1 shows the typical resistivity values of a particular area in Chandmari site. The results shows that the area has more clay so the placement of moisture sensor and piezometer are required instead of placing geophone, crack meter etc.

Geophysical characterization of areas prone to quick-clay landslides using radio-magnetotelluric and seismic methods

NASA Astrophysics Data System (ADS)

Wang, Shunguo; Malehmir, Alireza; Bastani, Mehrdad

2016-05-01

Landslides attributed to quick clays have not only considerable influences on surface geomorphology, they have caused delays in transportation systems, environmental problems and human fatalities, especially in Scandinavia and North America. If the subsurface distributions of quick clays are known, potential damages can be mitigated and the triggers of landslides can better be studied and understood. For this purpose, new radio-magnetotelluric (RMT) and seismic data were acquired in an area near the Göta River in southwest Sweden that contains quick clays and associated landslides. High-resolution data along 4 new lines, in total 3.8 km long, were acquired and merged with earlier acquired data from the site. Velocity and resistivity models derived from first breaks and RMT data were used to delineate subsurface geology, in particular the bedrock surface and coarse-grained materials that overlay the bedrock. The latter often are found underlying quick clays at the site. Comparably high-resistivity and sometimes high-velocity regions within marine clays are attributed to a combination of leached salt from marine clays or potential quick clays and coarse-grained materials. The resistivity and tomographic velocity models suggest a much larger role of the coarse-grained materials at the site than previously thought, but they also suggest two different scenarios for triggering quick-clay landslides at the site. These scenarios are related to the erosion of the riverbank, increased pore-pressure and surface topography when close to the river and human activity when away from the river and where bowl-shaped bedrock surrounds the sediments.

Predicting subsurface uranium transport: Mechanistic modeling constrained by experimental data

NASA Astrophysics Data System (ADS)

Ottman, Michael; Schenkeveld, Walter D. C.; Kraemer, Stephan

2017-04-01

Depleted uranium (DU) munitions and their widespread use throughout conflict zones around the world pose a persistent health threat to the inhabitants of those areas long after the conclusion of active combat. However, little emphasis has been put on developing a comprehensive, quantitative tool for use in remediation and hazard avoidance planning in a wide range of environments. In this context, we report experimental data on U interaction with soils and sediments. Here, we strive to improve existing risk assessment modeling paradigms by incorporating a variety of experimental data into a mechanistic U transport model for subsurface environments. 20 different soils and sediments from a variety of environments were chosen to represent a range of geochemical parameters that are relevant to U transport. The parameters included pH, organic matter content, CaCO3, Fe content and speciation, and clay content. pH ranged from 3 to 10, organic matter content from 6 to 120 g kg-1, CaCO3 from 0 to 700 g kg-1, amorphous Fe content from 0.3 to 6 g kg-1 and clay content from 4 to 580 g kg-1. Sorption experiments were then performed, and linear isotherms were constructed. Sorption experiment results show that among separate sets of sediments and soils, there is an inverse correlation between both soil pH and CaCO¬3 concentration relative to U sorptive affinity. The geological materials with the highest and lowest sorptive affinities for U differed in CaCO3 and organic matter concentrations, as well as clay content and pH. In a further step, we are testing if transport behavior in saturated porous media can be predicted based on adsorption isotherms and generic geochemical parameters, and comparing these modeling predictions with the results from column experiments. The comparison of these two data sets will examine if U transport can be effectively predicted from reactive transport modeling that incorporates the generic geochemical parameters. This work will serve to show whether a more mechanistic approach offers an improvement over statistical regression-based risk assessment models.

Application of ground-penetrating radar methods in determining hydrogeologic conditions in a karst area, west-central Florida

USGS Publications Warehouse

Barr, G.L.

1993-01-01

Ground-penetrating radar (GPR) is useful as a surface geophysical method for exploring geology and subsurface features in karst settings. Interpretation of GPR data was used to infer lithology and hydrogeologic conditions in west-central Florida. This study demonstrates how GPR methods can be used to investigate the hydrogeology of an area. GPR transmits radio- frequency electromagnetic waves into the ground and receives reflected energy waves from subsurface interfaces. Subsurface profiles showing sediment thickness, depth to water table and clay beds, karst development, buried objects, and lake-bottom structure were produced from GPR traverses obtained during December 1987 and March 1990 in Pinellas, Hillsborough, and Hardee Counties in west-central Florida. Performance of the GPR method is site specific, and data collected are principally affected by the sediment and pore fluids, conductances and dielectric constants. Effective exploration depths of the GPR surveys through predominately unsaturated and saturated sand and clay sediments at five study sites ranged from a few feet to greater than 50 feet below land surface. Exploration depths were limited when high conductivity clay was encountered, whereas greater exploration depths were possible in material composed of sand. Application of GPR is useful in profiling subsurface conditions, but proper interpretation depends upon the user's knowledge of the equipment and the local hydrogeological setting, as well as the ability to interpret the graphic profile.

Environmental Electrokinetics for a sustainable subsurface.

PubMed

Lima, A T; Hofmann, A; Reynolds, D; Ptacek, C J; Van Cappellen, P; Ottosen, L M; Pamukcu, S; Alshawabekh, A; O'Carroll, D M; Riis, C; Cox, E; Gent, D B; Landis, R; Wang, J; Chowdhury, A I A; Secord, E L; Sanchez-Hachair, A

2017-08-01

Soil and groundwater are key components in the sustainable management of the subsurface environment. Source contamination is one of its main threats and is commonly addressed using established remediation techniques such as in-situ chemical oxidation (ISCO), in-situ chemical reduction (ISCR; most notably using zero-valent iron [ZVI]), enhanced in-situ bioremediation (EISB), phytoremediation, soil-washing, pump-and-treat, soil vapour extraction (SVE), thermal treatment, and excavation and disposal. Decades of field applications have shown that these techniques can successfully treat or control contaminants in higher permeability subsurface materials such as sands, but achieve only limited success at sites where low permeability soils, such as silts and clays, prevail. Electrokinetics (EK), a soil remediation technique mostly recognized in in-situ treatment of low permeability soils, has, for the last decade, been combined with more conventional techniques and can significantly enhance the performance of several of these remediation technologies, including ISCO, ISCR, EISB and phytoremediation. Herein, we discuss the use of emerging EK techniques in tandem with conventional remediation techniques, to achieve improved remediation performance. Furthermore, we highlight new EK applications that may come to play a role in the sustainable treatment of the contaminated subsurface. Copyright © 2017 Elsevier Ltd. All rights reserved.

Modeling selenite adsorption envelopes on oxides, clay minerals, and soils using the triple layer model

USDA-ARS?s Scientific Manuscript database

Selenite adsorption behavior was investigated on amorphous aluminum and iron oxides, clay minerals: kaolinite, montmorillonite, and illite, and 45 surface and subsurface soil samples from the Southwestern and Midwestern regions of the USA as a function of solution pH. Selenite adsorption decreased ...

Aerobic microbial taxa dominate deep subsurface cores from the Alberta oil sands.

PubMed

Ridley, Christina M; Voordouw, Gerrit

2018-06-01

Little is known about the microbial ecology of the subsurface oil sands in Northern Alberta, Canada. Biodegradation of low molecular weight hydrocarbons by indigenous microbes has enriched high molecular weight hydrocarbons, resulting in highly viscous bitumen. This extreme subsurface environment is further characterized by low nutrient availability and limited access to water, thus resulting in low microbial biomass. Improved DNA isolation protocols and increasingly sensitive sequencing methods have allowed an in-depth investigation of the microbial ecology of this unique subsurface environmental niche. Community analysis was performed on core samples (n = 62) that were retrieved from two adjacent sites located in the Athabasca Oil Sands at depths from 220 to 320 m below the surface. Microbial communities were dominated by aerobic taxa, including Pseudomonas and Acinetobacter. Only one core sample microbial community was dominated by anaerobic taxa, including the methanogen Methanoculleus, as well as Desulfomicrobium and Thauera. Although the temperature of the bitumen-containing subsurface is low (8°C), two core samples had high fractions of the potentially thermophilic taxon, Thermus. Predominance of aerobic taxa in the subsurface suggests the potential for in situ aerobic hydrocarbon degradation; however, more studies are required to determine the functional role of these taxa within this unique environment.

Subsurface Environment Sampler for Improved In Situ Characterization of Subsurface Microbial Communities

NASA Astrophysics Data System (ADS)

Barnhart, E. P.; Ruppert, L. F.; Orem, W. H.; McIntosh, J. C.; Cunningham, A. B.; Fields, M. W.; Hiebert, R.; Hyatt, R.

2016-12-01

There is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by the extraction and transport of fossil fuels. This threat increases the need for improved groundwater monitoring and the ability to predict the extent to which microbial activity may remediate such contamination. The characterization of subsurface microbial communities could provide an ideal biomonitoring tool for the assessment of subsurface contamination due to prokaryotes environmental ubiquity, rapidity of response to environmental perturbation and the important role they play in hydrocarbon degradation and bioremediation. New DNA sequencing technologies provide the opportunity to cost-effectively identify the vast subsurface microbial ecosystem, but use of this new technology is restricted due to issues with sampling. Prior subsurface microbiology studies have relied on core samples that are expensive to obtain hard to collect aseptically and/or ground water samples that do not reflect in situ microbial densities or activities. The development of down-well incubation of sterile sediment with a Diffusive Microbial Sampler (DMS) has emerged as an alternative method to sample subsurface microbial communities that minimizes cost and contamination issues associated with traditional methods. We have designed a Subsurface Environment Sampler with a DMS module that could enable the anaerobic transport of the in situ microbial community from the field for laboratory bioremediation studies. This sampler could provide an inexpensive and standard method for subsurface microbial sampling which would make this tool useful for Federal, State, private and local agencies interested in monitoring contamination or the effectiveness of bioremediation activities in subsurface aquifers.

Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures.

PubMed

Drake, Henrik; Ivarsson, Magnus; Bengtson, Stefan; Heim, Christine; Siljeström, Sandra; Whitehouse, Martin J; Broman, Curt; Belivanova, Veneta; Åström, Mats E

2017-07-04

The deep biosphere is one of the least understood ecosystems on Earth. Although most microbiological studies in this system have focused on prokaryotes and neglected microeukaryotes, recent discoveries have revealed existence of fossil and active fungi in marine sediments and sub-seafloor basalts, with proposed importance for the subsurface energy cycle. However, studies of fungi in deep continental crystalline rocks are surprisingly few. Consequently, the characteristics and processes of fungi and fungus-prokaryote interactions in this vast environment remain enigmatic. Here we report the first findings of partly organically preserved and partly mineralized fungi at great depth in fractured crystalline rock (-740 m). Based on environmental parameters and mineralogy the fungi are interpreted as anaerobic. Synchrotron-based techniques and stable isotope microanalysis confirm a coupling between the fungi and sulfate reducing bacteria. The cryptoendolithic fungi have significantly weathered neighboring zeolite crystals and thus have implications for storage of toxic wastes using zeolite barriers.Deep subsurface microorganisms play an important role in nutrient cycling, yet little is known about deep continental fungal communities. Here, the authors show organically preserved and partly mineralized fungi at 740 m depth, and find evidence of an anaerobic fungi and sulfate reducing bacteria consortium.

Detection of microbes in the subsurface

NASA Technical Reports Server (NTRS)

White, David C.; Tunlid, Anders

1989-01-01

The search for evidence of microbial life in the deep subsurface of Earth has implications for the Mars Rover Sampling Return Missions program. If suitably protected environments can be found on Mars then the instrumentation to detect biomarkers could be used to examine the molecular details. Finding a lipid in Martian soil would represent possibly the simplest test for extant or extinct life. A device that could do a rapid extraction possibly using the supercritical fluid technology under development now with a detection of the carbon content would clearly indicate a sample to be returned.

Prions Adhere to Soil Minerals and Remain Infectious

PubMed Central

Johnson, Christopher J; Phillips, Kristen E; Schramm, Peter T; McKenzie, Debbie; Aiken, Judd M; Pedersen, Joel A

2006-01-01

An unidentified environmental reservoir of infectivity contributes to the natural transmission of prion diseases (transmissible spongiform encephalopathies [TSEs]) in sheep, deer, and elk. Prion infectivity may enter soil environments via shedding from diseased animals and decomposition of infected carcasses. Burial of TSE-infected cattle, sheep, and deer as a means of disposal has resulted in unintentional introduction of prions into subsurface environments. We examined the potential for soil to serve as a TSE reservoir by studying the interaction of the disease-associated prion protein (PrPSc) with common soil minerals. In this study, we demonstrated substantial PrPSc adsorption to two clay minerals, quartz, and four whole soil samples. We quantified the PrPSc-binding capacities of each mineral. Furthermore, we observed that PrPSc desorbed from montmorillonite clay was cleaved at an N-terminal site and the interaction between PrPSc and Mte was strong, making desorption of the protein difficult. Despite cleavage and avid binding, PrPSc bound to Mte remained infectious. Results from our study suggest that PrPSc released into soil environments may be preserved in a bioavailable form, perpetuating prion disease epizootics and exposing other species to the infectious agent. PMID:16617377

Geophysical monitoring of organic contaminants in sediments

NASA Astrophysics Data System (ADS)

Zhang, C.; Jennings, J.

2016-12-01

Soil and groundwater contamination pose threats to the health of human and the environment. Successful contaminant remediation requires effective in situ monitoring of physical, chemical, and biological processes in the subsurface. Minimally invasive geophysical methods have shown promise in characterizing organic contaminants in soil and groundwater and have been applied to monitor remediation processes. This study examines the sensitivity of low field proton nuclear magnetic resonance (NMR) and complex conductivity to the presence of organic contaminants in sediments. We aim to improve understanding of relationships between NMR and complex conductivity observables and hydrological properties of the sediments, as well as the amount and state of contaminants in porous media. We used toluene as a representative organic contaminant, and pure silica sands and montmorillonite clay as synthetic sediments. Sand-clay mixtures with various sand/clay ratios were prepared and saturated with different concentration of toluene. Relationships between the compositions of porous media, hydrocarbon concentration, and hydrological properties of sediments and geophysical response were investigated. The results from NMR relaxation time (T2) measurements reveal the dominant control of clay content on T2 relaxation, establish minimum toluene detectability, and demonstrate the effect of contaminant concentration on NMR signals. The diffusion-relaxation (D-T2) correlation measurement show toluene can be resolved from toluene-water mixture in sand-clay mixture. The results from ongoing complex conductivity measurements will also be presented and discussed.

Nematoda from the terrestrial deep subsurface of South Africa.

PubMed

Borgonie, G; García-Moyano, A; Litthauer, D; Bert, W; Bester, A; van Heerden, E; Möller, C; Erasmus, M; Onstott, T C

2011-06-02

Since its discovery over two decades ago, the deep subsurface biosphere has been considered to be the realm of single-cell organisms, extending over three kilometres into the Earth's crust and comprising a significant fraction of the global biosphere. The constraints of temperature, energy, dioxygen and space seemed to preclude the possibility of more-complex, multicellular organisms from surviving at these depths. Here we report species of the phylum Nematoda that have been detected in or recovered from 0.9-3.6-kilometre-deep fracture water in the deep mines of South Africa but have not been detected in the mining water. These subsurface nematodes, including a new species, Halicephalobus mephisto, tolerate high temperature, reproduce asexually and preferentially feed upon subsurface bacteria. Carbon-14 data indicate that the fracture water in which the nematodes reside is 3,000-12,000-year-old palaeometeoric water. Our data suggest that nematodes should be found in other deep hypoxic settings where temperature permits, and that they may control the microbial population density by grazing on fracture surface biofilm patches. Our results expand the known metazoan biosphere and demonstrate that deep ecosystems are more complex than previously accepted. The discovery of multicellular life in the deep subsurface of the Earth also has important implications for the search for subsurface life on other planets in our Solar System.

Potential for Nitrogen Fixation and Nitrification in the Granite-Hosted Subsurface at Henderson Mine, CO

PubMed Central

Swanner, Elizabeth D.; Templeton, Alexis S.

2011-01-01

The existence of life in the deep terrestrial subsurface is established, yet few studies have investigated the origin of nitrogen that supports deep life. Previously, 16S rRNA gene surveys cataloged a diverse microbial community in subsurface fluids draining from boreholes 3000 feet deep at Henderson Mine, CO, USA (Sahl et al., 2008). The prior characterization of the fluid chemistry and microbial community forms the basis for the further investigation here of the source of NH4+. The reported fluid chemistry included N2, NH4+ (5–112 μM), NO2− (27–48 μM), and NO3− (17–72 μM). In this study, the correlation between low NH4+ concentrations in dominantly meteoric fluids and higher NH4+ in rock-reacted fluids is used to hypothesize that NH4+ is sourced from NH4+-bearing biotite. However, biotite samples from the host rocks and ore-body minerals were analyzed by Fourier transform infrared (FTIR) microscopy and none-contained NH4+. However, the nitrogenase-encoding gene nifH was successfully amplified from DNA of the fluid sample with high NH4+, suggesting that subsurface microbes have the capability to fix N2. If so, unregulated nitrogen fixation may account for the relatively high NH4+ concentrations in the fluids. Additionally, the amoA and nxrB genes for archaeal ammonium monooxygenase and nitrite oxidoreductase, respectively, were amplified from the high NH4+ fluid DNA, while bacterial amoA genes were not. Putative nitrifying organisms are closely related to ammonium-oxidizing Crenarchaeota and nitrite-oxidizing Nitrospira detected in other subsurface sites based upon 16S rRNA sequence analysis. Thermodynamic calculations underscore the importance of NH4+ as an energy source in a subsurface nitrification pathway. These results suggest that the subsurface microbial community at Henderson is adapted to the low nutrient and energy environment by their capability of fixing nitrogen, and that fixed nitrogen may support subsurface biomass via nitrification. PMID:22190904

Natural versus anthropogenic genesis of mardels (closed depressions) on the Gutland plateau (Luxembourg); archaeometrical and palynological evidence of Roman clay excavation from mardels.

NASA Astrophysics Data System (ADS)

van Mourik, Jan; Braekmans, Dennis; Doorenbosch, Marieke; Kuijper, Wim; van der Plicht, Hans

2016-04-01

Mardels, small closed depressions, are distinctive landforms on the Luxembourger Gutland plateau. In the present landscape most mardels are shallow fens, filled with colluvial sediments. The genesis of mardels has been studied intensively, inside and outside Luxembourg. Some researchers suggested a natural development and consider mardels as subsidence basins due to subsurface solution of gypsum veins, other researchers suggested cultural causes and consider mardels as prehistorical quarries. In the Gutland, mardels occur on various substrates. Mardels on the Strassen marls (li3) are abandoned quarries, related to clay excavation in Roman Time. Mardels on the Luxembourger sandstone (li2) are sinkholes, related to joint patterns in the sandstone formation. Mardels on the Keuper marls (km1,3) are originally subsidence basins, related to subsurface dissolutions of gypsum lenses and veins, filled with colluvial clay. The results of pollen analysis and archaeometrical tests demonstrate Roman extraction of clay for the production of ancient ceramics. So, the natural depressions have been enlarged to the present mardels. After excavation, the sedimentation of colluvium restarted in the abandoned quarries.

A Modal Investigation of Elastic Anisotropy in Shallow Water Environments: A Study of Anisotropy Beyond VTI

DTIC Science & Technology

2010-10-01

sediments, Geophys. J. Int., 104, 241-254. Bohlke, B.M. and Bennett, R.H., 1980. Mississippi prodelta crusts: a clay fabric and geotech - nical analysis...Mar. Geotech ., 4, 55-81. Carlson, R.L., Schafternaar, C.H., and Moore, R.P.,, 1984. Causes of compressional-wave anisotropy in carbonate-bearing, deep

Supercritical CO2 uptake by nonswelling phyllosilicates

PubMed Central

Tokunaga, Tetsu K.; Ashby, Paul D.; Kim, Yongman; Voltolini, Marco; Gilbert, Benjamin; DePaolo, Donald J.

2018-01-01

Interactions between supercritical (sc) CO2 and minerals are important when CO2 is injected into geologic formations for storage and as working fluids for enhanced oil recovery, hydraulic fracturing, and geothermal energy extraction. It has previously been shown that at the elevated pressures and temperatures of the deep subsurface, scCO2 alters smectites (typical swelling phyllosilicates). However, less is known about the effects of scCO2 on nonswelling phyllosilicates (illite and muscovite), despite the fact that the latter are the dominant clay minerals in deep subsurface shales and mudstones. Our studies conducted by using single crystals, combining reaction (incubation with scCO2), visualization [atomic force microscopy (AFM)], and quantifications (AFM, X-ray photoelectron spectroscopy, X-ray diffraction, and off-gassing measurements) revealed unexpectedly high CO2 uptake that far exceeded its macroscopic surface area. Results from different methods collectively suggest that CO2 partially entered the muscovite interlayers, although the pathways remain to be determined. We hypothesize that preferential dissolution at weaker surface defects and frayed edges allows CO2 to enter the interlayers under elevated pressure and temperature, rather than by diffusing solely from edges deeply into interlayers. This unexpected uptake of CO2, can increase CO2 storage capacity by up to ∼30% relative to the capacity associated with residual trapping in a 0.2-porosity sandstone reservoir containing up to 18 mass % of illite/muscovite. This excess CO2 uptake constitutes a previously unrecognized potential trapping mechanism. PMID:29339499

Supercritical CO2 uptake by nonswelling phyllosilicates.

PubMed

Wan, Jiamin; Tokunaga, Tetsu K; Ashby, Paul D; Kim, Yongman; Voltolini, Marco; Gilbert, Benjamin; DePaolo, Donald J

2018-01-30

Interactions between supercritical (sc) CO 2 and minerals are important when CO 2 is injected into geologic formations for storage and as working fluids for enhanced oil recovery, hydraulic fracturing, and geothermal energy extraction. It has previously been shown that at the elevated pressures and temperatures of the deep subsurface, scCO 2 alters smectites (typical swelling phyllosilicates). However, less is known about the effects of scCO 2 on nonswelling phyllosilicates (illite and muscovite), despite the fact that the latter are the dominant clay minerals in deep subsurface shales and mudstones. Our studies conducted by using single crystals, combining reaction (incubation with scCO 2 ), visualization [atomic force microscopy (AFM)], and quantifications (AFM, X-ray photoelectron spectroscopy, X-ray diffraction, and off-gassing measurements) revealed unexpectedly high CO 2 uptake that far exceeded its macroscopic surface area. Results from different methods collectively suggest that CO 2 partially entered the muscovite interlayers, although the pathways remain to be determined. We hypothesize that preferential dissolution at weaker surface defects and frayed edges allows CO 2 to enter the interlayers under elevated pressure and temperature, rather than by diffusing solely from edges deeply into interlayers. This unexpected uptake of CO 2 , can increase CO 2 storage capacity by up to ∼30% relative to the capacity associated with residual trapping in a 0.2-porosity sandstone reservoir containing up to 18 mass % of illite/muscovite. This excess CO 2 uptake constitutes a previously unrecognized potential trapping mechanism. Copyright © 2018 the Author(s). Published by PNAS.

Supercritical CO 2 uptake by nonswelling phyllosilicates

DOE PAGES

Wan, Jiamin; Tokunaga, Tetsu K.; Ashby, Paul D.; ...

2018-01-16

Interactions between supercritical (sc) CO 2 and minerals are important when CO 2 is injected into geologic formations for storage and as working fluids for enhanced oil recovery, hydraulic fracturing, and geothermal energy extraction. It has previously been shown that at the elevated pressures and temperatures of the deep subsurface, scCO 2 alters smectites (typical swelling phyllosilicates). However, less is known about the effects of scCO 2 on nonswelling phyllosilicates (illite and muscovite), despite the fact that the latter are the dominant clay minerals in deep subsurface shales and mudstones. Our studies conducted by using single crystals, combining reaction (incubationmore » with scCO 2 ), visualization [atomic force microscopy (AFM)], and quantifications (AFM, X-ray photoelectron spectroscopy, X-ray diffraction, and off-gassing measurements) revealed unexpectedly high CO 2 uptake that far exceeded its macroscopic surface area. Results from different methods collectively suggest that CO 2 partially entered the muscovite interlayers, although the pathways remain to be determined. We hypothesize that preferential dissolution at weaker surface defects and frayed edges allows CO 2 to enter the interlayers under elevated pressure and temperature, rather than by diffusing solely from edges deeply into interlayers. This unexpected uptake of CO 2, can increase CO 2 storage capacity by up to ~30% relative to the capacity associated with residual trapping in a 0.2-porosity sandstone reservoir containing up to 18 mass % of illite/muscovite. This excess CO 2 uptake constitutes a previously unrecognized potential trapping mechanism.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wan, Jiamin; Tokunaga, Tetsu K.; Ashby, Paul D.

Interactions between supercritical (sc) CO 2 and minerals are important when CO 2 is injected into geologic formations for storage and as working fluids for enhanced oil recovery, hydraulic fracturing, and geothermal energy extraction. It has previously been shown that at the elevated pressures and temperatures of the deep subsurface, scCO 2 alters smectites (typical swelling phyllosilicates). However, less is known about the effects of scCO 2 on nonswelling phyllosilicates (illite and muscovite), despite the fact that the latter are the dominant clay minerals in deep subsurface shales and mudstones. Our studies conducted by using single crystals, combining reaction (incubationmore » with scCO 2 ), visualization [atomic force microscopy (AFM)], and quantifications (AFM, X-ray photoelectron spectroscopy, X-ray diffraction, and off-gassing measurements) revealed unexpectedly high CO 2 uptake that far exceeded its macroscopic surface area. Results from different methods collectively suggest that CO 2 partially entered the muscovite interlayers, although the pathways remain to be determined. We hypothesize that preferential dissolution at weaker surface defects and frayed edges allows CO 2 to enter the interlayers under elevated pressure and temperature, rather than by diffusing solely from edges deeply into interlayers. This unexpected uptake of CO 2, can increase CO 2 storage capacity by up to ~30% relative to the capacity associated with residual trapping in a 0.2-porosity sandstone reservoir containing up to 18 mass % of illite/muscovite. This excess CO 2 uptake constitutes a previously unrecognized potential trapping mechanism.« less

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

PubMed Central

Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

2009-01-01

Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

Implications of Martian Phyllosilicate Formation Conditions to the Early Climate on Mars

NASA Astrophysics Data System (ADS)

Bishop, J. L.; Baker, L.; Fairén, A. G.; Michalski, J. R.; Gago-Duport, L.; Velbel, M. A.; Gross, C.; Rampe, E. B.

2017-12-01

We propose that short-term warmer and wetter environments, occurring sporadically in a generally cold early Mars, enabled formation of phyllosilicate-rich outcrops on the surface of Mars without requiring long-term warm and wet conditions. We are investigating phyllosilicate formation mechanisms including CO2 and H2O budgets to provide constraints on the early martian climate. We have evaluated the nature and stratigraphy of phyllosilicate-bearing surface units on Mars based on i) phyllosilicate-forming environments on Earth, ii) phyllosilicate reactions in the lab, and iii) modeling experiments involving phyllosilicates and short-range ordered (SRO) materials. The type of phyllosilicates that form on Mars depends on temperature, water/rock ratio, acidity, salinity and available ions. Mg-rich trioctahedral smectite mixtures are more consistent with subsurface formation environments (crustal, hydrothermal or alkaline lakes) up to 400 °C and are not associated with martian surface environments. In contrast, clay profiles dominated by dioctahedral Al/Fe-smectites are typically formed in subaqueous or subaerial surface environments. We propose models describing formation of smectite-rich outcrops and laterally extensive vertical profiles of Fe/Mg-smectites, sulfates, and Al-rich clay assemblages formed in surface environments. Further, the presence of abundant SRO materials without phyllosilicates could mark the end of the last warm and wet episode on Mars supporting smectite formation. Climate Implications for Early Mars: Clay formation reactions proceed extremely slowly at cool temperatures. The thick smectite outcrops observed on Mars through remote sensing would require standing water on Mars for hundreds of millions of years if they formed in waters 10-15 °C. However, warmer temperatures could have enabled faster production of these smectite-rich beds. Sporadic warming episodes to 30-40 °C could have enabled formation of these smectites over only tens or hundreds of thousands of years instead. Our analyses of the phyllosilicate record on Mars point to a scenario of brief warm and wet conditions that accounts for formation of substantial smectite clays in many locations, geologic features resulting from liquid water across the planet, and a generally cold and dry climate.

The effect of vegetation and soil texture on the nature of organics in runoff from a catchment supplying water for domestic consumption.

PubMed

Awad, John; van Leeuwen, John; Abate, Dawit; Pichler, Markus; Bestland, Erick; Chittleborough, David J; Fleming, Nigel; Cohen, Jonathan; Liffner, Joel; Drikas, Mary

2015-10-01

The influence of vegetation and soil texture on the concentration and character of dissolved organic matter (DOM) present in runoff from the surface and sub-surface of zero order catchments of the Myponga Reservoir-catchment (South Australia) was investigated to determine the impacts of catchment characteristics and land management practices on the quality of waters used for domestic supply. Catchments selected have distinct vegetative cover (grass, native vegetation or pine) and contrasting texture of the surface soil horizon (sand or clay loam/clay). Water samples were collected from three slope positions (upper, middle, and lower) at soil depths of ~30 cm and ~60 cm in addition to overland flows. Filtered (0.45 μm) water samples were analyzed for dissolved organic carbon (DOC) and UV-visible absorbance and by F-EEM and HPSEC with UV and fluorescence detection to characterize the DOM. Surface and sub-surface runoff from catchments with clay soils and native vegetation or grass had lower DOC concentrations and lower relative abundances of aromatic, humic-like and high molecular weight organics than runoff from sandy soils with these vegetative types. Sub-surface flows from two catchments with Pinus radiata had similar DOC concentrations and DOM character, regardless of marked variation in surface soil texture. Runoff from catchments under native vegetation and grass on clay soils resulted in lower DOC concentrations and hence would be expected to have lower coagulant demand in conventional treatment for potable water supply than runoff from corresponding sandy soil catchments. However, organics in runoff from clay catchments would be more difficult to remove by coagulation. Surface waters from the native vegetation and grass catchments were generally found to have higher relative abundance of organic compounds amenable to removal by coagulation compared with sub-surface waters. Biophysical and land management practices combine to have a marked influence on the quality of source water used for domestic supply. Copyright © 2015 Elsevier B.V. All rights reserved.

viral abundance distribution in deep waters of the Northern of South China Sea

NASA Astrophysics Data System (ADS)

He, Lei; Yin, Kedong

2017-04-01

Little is known about the vertical distribution and interaction of viruses and bacteria in the deep ocean water column. The vertical distribution of viral-like particles and bacterial abundance was investigated in the deep water column in the South China Sea during September 2005 along with salinity, temperature and dissolved oxygen. There were double maxima in the ratio of viral to bacterial abundance (VBR) in the water column: the subsurface maximum located at 50-100 m near the pycnocline layer, and the deep maximum at 800-1000 m. At the subsurface maximum of VBR, both viral and bacterial abundance were maximal in the water column, and at the deep maximum of VBR, both viral and bacterial abundance were low, but bacterial abundance was relatively lower than viral abundance. The subsurface VBR maximum coincided with the subsurface chlorophyll maximum while the deep VBR maximum coincided with the minimum in dissolved oxygen (2.91mg L-1). Therefore, we hypothesize that the two maxima were formed by different mechanisms. The subsurface VBR maximum was formed due to an increase in bacterial abundance resulting from the stimulation of abundant organic supply at the subsurface chlorophyll maximum, whereas the deep VBR maximum was formed due to a decrease in bacterial abundance caused by more limitation of organic matter at the oxygen minimum. The evidence suggests that viruses play an important role in controlling bacterial abundance in the deep water column due to the limitation of organic matter supply. In turn, this slows down the formation of the oxygen minimum in which oxygen may be otherwise lower. The mechanism has a great implication that viruses could control bacterial decomposition of organic matter, oxygen consumption and nutrient remineralization in the deep oceans.

[Search for life in deep biospheres].

PubMed

Naganuma, Takeshi

2003-12-01

The life in deep biospheres bridges conventional biology and future exobiology. This review focuses the microbiological studies from the selected deep biospheres, i.e., deep-sea hydrothermal vents, sub-hydrothermal vents, terrestrial subsurface and a sub-glacier lake. The dark biospheres facilitate the emergence of organisms and communities dependent on chemolithoautotrophy, which are overwhelmed by photoautotrophy (photosynthesis) in the surface biospheres. The life at deep-sea hydrothermal vents owes much to chemolithoautotrophy based on the oxidation of sulfide emitted from the vents. It is likely that similarly active bodies such as the Jovian satellite Europa may have hydrothermal vents and associated biological communities. Anoxic or anaerobic condition is characteristic of deep subsurface biospheres. Subsurface microorganisms exploit available oxidants, or terminal electron acceptors (TEA), for anaerobic respiration. Sulfate, nitrate, iron (III) and CO2 are the representative TEAs in the deep subsurface. Below the 3000-4000 m-thick glacier on Antarctica, there have been >70 lakes with liquid water located. One of such sub-glacial lakes, Lake Vostok, is about to be drill-penetrated for microbiological studies. These deep biosphere "platforms" provide new knowledge about the diversity and potential of the Earth's life. The expertise obtained from the deep biosphere expeditions will facilitate the capability of exobiologial exploration.

Rates of microbial metabolism in deep coastal plain aquifers

USGS Publications Warehouse

Chapelle, F.H.; Lovley, D.R.

1990-01-01

Rates of microbial metabolism in deep anaerobic aquifers of the Atlantic coastal plain of South Carolina were investigated by both microbiological and geochemical techniques. Rates of [2-14C]acetate and [U-14C]glucose oxidation as well as geochemical evidence indicated that metabolic rates were faster in the sandy sediments composing the aquifers than in the clayey sediments of the confining layers. In the sandy aquifer sediments, estimates of the rates of CO2 production (millimoles of CO2 per liter per year) based on the oxidation of [2-14C]acetate were 9.4 x 10-3 to 2.4 x 10-1 for the Black Creek aquifer, 1.1 x 10-2 for the Middendorf aquifer, and <7 x 10-5 for the Cape Fear aquifer. These estimates were at least 2 orders of magnitude lower than previously published estimates that were based on the accumulation of CO2 in laboratory incubations of similar deep subsurface sediments. In contrast, geochemical modeling of groundwater chemistry changes along aquifer flowpaths gave rate estimates that ranged from 10-4 to 10-6 mmol of CO2 per liter per year. The age of these sediments (ca. 80 million years) and their organic carbon content suggest that average rates of CO2 production could have been no more than 10-4 mmol per liter per year. Thus, laboratory incubations may greatly overestimate the in situ rates of microbial metabolism in deep subsurface environments. This has important implications for the use of laboratory incubations in attempts to estimate biorestoration capacities of deep aquifers. The rate estimates from geochemical modeling indicate that deep aquifers are among the most oligotrophic aquatic environments in which there is ongoing microbial metabolism.

Lithological properties of sedimentary environments in the shallow subsurface of the Northern Netherlands

NASA Astrophysics Data System (ADS)

Harting, Ronald; Bosch, Aleid; Gunnink, Jan

2014-05-01

Society has an increasing demand from the subsurface, which in the Dutch shallow subsurface (upper 30 to 40 meters) mainly focuses on natural aggregate resources, groundwater, infrastructure and dike safety. This stimulates the demand for knowledge about the composition and heterogeneity of the subsurface and its physical and chemical properties, including the uncertainties involved. Physical and chemical properties of sediments in the subsurface have been under investigation for decades; however, the usefulness of this data for applied research and the understanding of these properties is limited. This is due to several factors: studies consist mainly of separately collected datasets, targeted at a limited amount of parameters, focused on a small number of geological units, distributed unevenly with depth and usually collected from clustered drillings with limited spatial extent or are analysed with different techniques and methods, often on disturbed samples. These factors result in a heterogeneous and biased dataset not suitable to function as a reference dataset or to statistically determine regional characteristics of geological units. To overcome these shortcomings, the Geological Survey of the Netherlands is establishing a nation-wide reference dataset for physical and chemical properties. In 2006, a drilling campaign was started using cone penetration tests, cored drillings and geophysical well logs, choosing the sites for a good geographical distribution. The lithological properties of the undisturbed cores are visually described and interpreted for lithostratigraphy and inferred sedimentary environment based on lithofacies. The location of the samples in the cores are chosen based on this description and interpretation, resulting in an evenly distributed dataset of in situ samples with respect to geological units as well as an adequate number of samples suitable for statistical analysis. Analyses are uniformly performed for grain size distribution, permeability (both high and low permeable lithologies) and geochemical methods (X-Ray Fluorescence, Thermo-Gravimetric Analysis, Total Carbon, Total Sulphur and Total Organic Carbon). These analyses result in a large number of lithological, hydrological and geochemical parameters, i.e. clay content, sand median, vertical and horizontal permeability and CaCO3-content. We present the results from the analysis of lithological properties for the Northern Netherlands. Besides geology, these properties can be applied directly in studies concerning (amongst others) groundwater, natural aggregates and dike safety. We demonstrate the use of sedimentary environments based on lithofacies as a useful tool for comparison between lithostratigraphic units and lithofacies. These lithofacies match distinct parts of the marine, fluvial, glacial, eolian or organogenic environment, i.e. tidal channel sand, floodbasin clay and subglacial till. This results in lithological properties illustrating the heterogeneity within a geological unit and between equal depositional environments in different lithostratigraphic units. The acquired data have so far been used in several applied studies, i.e. improving parameterisation of 3D models leading to increased accuracy in groundwater models and dike safety studies concerning dike failure due to undermining. Recently, grain size distributions measured with different methods were recalibrated into a homogeneous dataset using this reference set, which greatly enlarged the dataset to be incorporated in the parameterisation of a 3D voxel model.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Probst, Alexander J.; Ladd, Bethany; Jarett, Jessica K.

An enormous diversity of previously unknown bacteria and archaea has been discovered recently, yet their functional capacities and distributions in the terrestrial subsurface remain uncertain. Here, we continually sampled a CO 2-driven geyser (Colorado Plateau, Utah, USA) over its 5-day eruption cycle to test the hypothesis that stratified, sandstone-hosted aquifers sampled over three phases of the eruption cycle have microbial communities that differ both in membership and function. Genome-resolved metagenomics, single-cell genomics and geochemical analyses confirmed this hypothesis and linked microorganisms to groundwater compositions from different depths. Autotrophic Candidatus “Altiarchaeum sp.” and phylogenetically deep-branching nanoarchaea dominate the deepest groundwater. Amore » nanoarchaeon with limited metabolic capacity is inferred to be a potential symbiont of the Ca. “Altiarchaeum”. Candidate Phyla Radiation bacteria are also present in the deepest groundwater and they are relatively abundant in water from intermediate depths. During the recovery phase of the geyser, microaerophilic Fe- and S-oxidizers have high in situ genome replication rates. Autotrophic Sulfurimonas sustained by aerobic sulfide oxidation and with the capacity for N 2 fixation dominate the shallow aquifer. Overall, 104 different phylum-level lineages are present in water from these subsurface environments, with uncultivated archaea and bacteria partitioned to the deeper subsurface.« less

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

DOE PAGES

Probst, Alexander J.; Ladd, Bethany; Jarett, Jessica K.; ...

2018-01-29

An enormous diversity of previously unknown bacteria and archaea has been discovered recently, yet their functional capacities and distributions in the terrestrial subsurface remain uncertain. Here, we continually sampled a CO 2-driven geyser (Colorado Plateau, Utah, USA) over its 5-day eruption cycle to test the hypothesis that stratified, sandstone-hosted aquifers sampled over three phases of the eruption cycle have microbial communities that differ both in membership and function. Genome-resolved metagenomics, single-cell genomics and geochemical analyses confirmed this hypothesis and linked microorganisms to groundwater compositions from different depths. Autotrophic Candidatus “Altiarchaeum sp.” and phylogenetically deep-branching nanoarchaea dominate the deepest groundwater. Amore » nanoarchaeon with limited metabolic capacity is inferred to be a potential symbiont of the Ca. “Altiarchaeum”. Candidate Phyla Radiation bacteria are also present in the deepest groundwater and they are relatively abundant in water from intermediate depths. During the recovery phase of the geyser, microaerophilic Fe- and S-oxidizers have high in situ genome replication rates. Autotrophic Sulfurimonas sustained by aerobic sulfide oxidation and with the capacity for N 2 fixation dominate the shallow aquifer. Overall, 104 different phylum-level lineages are present in water from these subsurface environments, with uncultivated archaea and bacteria partitioned to the deeper subsurface.« less

Sulfur and iron cycling in deep-subsurface, coal bed-containing sediments off Shimokita (Japan)

NASA Astrophysics Data System (ADS)

Riedinger, N.; Smirnoff, M. N.; Gilhooly, W.; Phillips, S. C.; Lyons, T. W.; 337 Scientific Party, I.

2013-12-01

The main goal of IODP Expedition 337 was the identification and characterization of the deep coal bed biosphere and hydrocarbon system off the Shimokita Peninsula (Japan) in the northwestern Pacific using the D/V Chikyu. To accomplish this scientific objective, it was also necessary to investigate the inorganic biogeochemistry in order to identify possible electron acceptors and bio-essential nutrients. These biogeochemical parameters greatly influence both, the composition and abundance of microbial communities as well as the organic carbon cycle. In turn, the microbially mediated carbon cycle influences the diagenetic reactions in the subsurface, thus, altering geochemical and physical characteristics of the material. Here we present results from metal and sulfur geochemical analyses from the deep-subsurface sediments (about 1250 to 2466 mbsf) at Site C0020 off Shimokita. The measured concentrations of acid volatile sulfur (AVS) as well as chromium reducible sulfur (CRS) reflect the alteration of iron oxides to iron sulfides and indicate that the main sulfur-bearing phase in the investigated sediments is pyrite. Concentrations of intermediate sulfur species are minor and occur mainly in the coal-bearing interval. Our data show that the uppermost sediments contain higher amounts of pyrite (up to 1.2 wt.%) with an average of 0.5 wt.% compared to the deeper deposits (below about 1800 mbsf), which show an average of 0.16 wt.%. In contrast, iron oxide concentrations are highest in the deeper sediment sections (up to 0.4%), where pyrite concentrations are low. The alteration of iron oxides to sulfides in theses lower section was probably governed by the amount of available sulfide in the pore water. The occurrence of (bio-)reactive iron phases in these deeply buried sediments has implications for the deep biosphere as those minerals have the potential to serve as electron acceptors during burial, including reactions involving deep sourced electron donors, such as hydrogen and methane - related to the coal bed as the potential source. Thus, the deep subsurface coal beds off Shimokita provide an ideal environment to investigate microbial and metal interactions under extreme conditions.

Methanogenic degradation of petroleum hydrocarbons in subsurface environments remediation, heavy oil formation, and energy recovery.

PubMed

Gray, N D; Sherry, A; Hubert, C; Dolfing, J; Head, I M

2010-01-01

Hydrocarbons are common constituents of surface, shallow, and deep-subsurface environments. Under anaerobic conditions, hydrocarbons can be degraded to methane by methanogenic microbial consortia. This degradation process is widespread in the geosphere. In comparison with other anaerobic processes, methanogenic hydrocarbon degradation is more sustainable over geological time scales because replenishment of an exogenous electron acceptor is not required. As a consequence, this process has been responsible for the formation of the world's vast deposits of heavy oil, which far exceed conventional oil assets such as those found in the Middle East. Methanogenic degradation is also a potentially important component of attenuation in hydrocarbon contamination plumes. Studies of the organisms, syntrophic partnerships, mechanisms, and geochemical signatures associated with methanogenic hydrocarbon degradation have identified common themes and diagnostic markers for this process in the subsurface. These studies have also identified the potential to engineer methanogenic processes to enhance the recovery of energy assets as biogenic methane from residual oils stranded in petroleum systems. Copyright 2010 Elsevier Inc. All rights reserved.

Effect of replacing surface inlets with blind or gravel inlets on sediment and phosphorus subsurface drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

The State, Potential Distribution, and Biological Implications of Methane in the Martian Crust

NASA Technical Reports Server (NTRS)

Max, Michael D.; Clifford, Stephen M.

2000-01-01

The search for life on Mars has recently focused on its potential survival in deep (>2 km) subpermafrost aquifers where anaerobic bacteria, similar to those found in deep subsurface ecosystems on Earth, may have survived in an environment that has remained stable for billions of years. An anticipated by-product of this biological activity is methane. The detection of large deposits of methane gas and hydrate in the Martian cryosphere, or as emissions from deep fracture zones, would provide persuasive evidence of indigenous life and confirm the presence of a valuable in situ resource for use by future human explorers.

Eukaryotic opportunists dominate the deep-subsurface biosphere in South Africa

PubMed Central

Borgonie, G.; Linage-Alvarez, B.; Ojo, A. O.; Mundle, S.O.C.; Freese, L B.; Van Rooyen, C.; Kuloyo, O.; Albertyn, J.; Pohl, C.; Cason, E. D.; Vermeulen, J.; Pienaar, C.; Litthauer, D.; Van Niekerk, H.; Van Eeden, J.; Lollar, B. Sherwood.; Onstott, T. C.; Van Heerden, E.

2015-01-01

Following the discovery of the first Eukarya in the deep subsurface, intense interest has developed to understand the diversity of eukaryotes living in these extreme environments. We identified that Platyhelminthes, Rotifera, Annelida and Arthropoda are thriving at 1.4 km depths in palaeometeoric fissure water up to 12,300 yr old in South African mines. Protozoa and Fungi have also been identified; however, they are present in low numbers. Characterization of the different species reveals that many are opportunistic organisms with an origin due to recharge from surface waters rather than soil leaching. This is the first known study to demonstrate the in situ distribution of biofilms on fissure rock faces using video documentation. Calculations suggest that food, not dissolved oxygen is the limiting factor for eukaryal population growth. The discovery of a group of Eukarya underground has important implications for the search for life on other planets in our solar system. PMID:26597082

Eukaryotic opportunists dominate the deep-subsurface biosphere in South Africa.

PubMed

Borgonie, G; Linage-Alvarez, B; Ojo, A O; Mundle, S O C; Freese, L B; Van Rooyen, C; Kuloyo, O; Albertyn, J; Pohl, C; Cason, E D; Vermeulen, J; Pienaar, C; Litthauer, D; Van Niekerk, H; Van Eeden, J; Sherwood Lollar, B; Onstott, T C; Van Heerden, E

2015-11-24

Following the discovery of the first Eukarya in the deep subsurface, intense interest has developed to understand the diversity of eukaryotes living in these extreme environments. We identified that Platyhelminthes, Rotifera, Annelida and Arthropoda are thriving at 1.4 km depths in palaeometeoric fissure water up to 12,300 yr old in South African mines. Protozoa and Fungi have also been identified; however, they are present in low numbers. Characterization of the different species reveals that many are opportunistic organisms with an origin due to recharge from surface waters rather than soil leaching. This is the first known study to demonstrate the in situ distribution of biofilms on fissure rock faces using video documentation. Calculations suggest that food, not dissolved oxygen is the limiting factor for eukaryal population growth. The discovery of a group of Eukarya underground has important implications for the search for life on other planets in our solar system.

High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments.

PubMed

Engelhardt, Tim; Kallmeyer, Jens; Cypionka, Heribert; Engelen, Bert

2014-07-01

Marine sediments cover two-thirds of our planet and harbor huge numbers of living prokaryotes. Long-term survival of indigenous microorganisms within the deep subsurface is still enigmatic, as sources of organic carbon are vanishingly small. To better understand controlling factors of microbial life, we have analyzed viral abundance within a comprehensive set of globally distributed subsurface sediments. Phages were detected by electron microscopy in deep (320 m below seafloor), ancient (∼14 Ma old) and the most oligotrophic subsurface sediments of the world's oceans (South Pacific Gyre (SPG)). The numbers of viruses (10(4)-10(9) cm(-3), counted by epifluorescence microscopy) generally decreased with sediment depth, but always exceeded the total cell counts. The enormous numbers of viruses indicate their impact as a controlling factor for prokaryotic mortality in the marine deep biosphere. The virus-to-cell ratios increased in deeper and more oligotrophic layers, exhibiting values of up to 225 in the deep subsurface of the SPG. High numbers of phages might be due to absorption onto the sediment matrix and a diminished degradation by exoenzymes. However, even in the oldest sediments, microbial communities are capable of maintaining viral populations, indicating an ongoing viral production and thus, viruses provide an independent indicator for microbial life in the marine deep biosphere.

Sub-Surface and Bulk Creep Behaviour of Polyurethane/Clay Nanocomposites.

PubMed

Jin, J; Yusoh, K; Zhang, H X; Song, M

2016-03-01

A series of exfoliated and intercalated polyurethane organoclay nanocomposites were prepared by in situ polymerization of polyol/organoclay mixture, chain extender and diisocyanate. The creep behaviour of subsurface and bulk of the polyurethane coatings was investigated by nanoindentation technique and uniaxial conventional creep testing method, respectively. The results showed that the creep resistance of the nanocomposites was significantly improved by incorporation of organoclay. The enhancement of creep resistance was dependent on clay content as well as organoclay structure (exfoliation or intercalation) in the polymer matrix. With 1 wt% organoclay, the creep resistance increased by about 50% for the intercalated organoclay and 6% for the exfoliated organoclay systems, respectively, compared to the pristine polyurethane. Viscoelastic model was employed to investigate the effect of organoclay loadings on the creep performance of the polyurethane. Results showed the model was in good agreement with the experimental data. Incorporation of clay leads to an increase in elastic deformation especially in exfoliated polyurethane nanocomposites and induces a higher initial displacement at the early stage of creep.

Sorting Out the Ocean Crust Deep Biosphere with Single Cell Omics Approaches

NASA Astrophysics Data System (ADS)

Orcutt, B.; D'Angelo, T.; Goordial, J.; Jones, R. M.; Carr, S. A.

2017-12-01

Although oceanic crust comprises a large habitat for subsurface life, the structure, function, and dynamics of microbial communities living on rocks in the subsurface are poorly understood. Single cell level approaches can overcome limitations of low biomass in subsurface systems. Coupled with incubation experiments with amino acid orthologs, single cell level sorting can reveal high resolution information about identity, functional potential, and growth. Leveraging collaboration with the Single Cell Genomics Center and the Facility for Aquatic Cytometry at Bigelow Laboratory, we present recent results from single cell level sorting and -omics sequencing from several crustal environments, including the Atlantis Massif and the Juan de Fuca Ridge flank. We will also highlight new experiments conducted with samples recovered from the flank of the Mid-Atlantic Ridge.

Poroelastic Parameters of Peru Margin Sediments: Implications for Flow and Transport at Multiple Scales in the Marine Biosphere

NASA Astrophysics Data System (ADS)

Gettemy, G. L.; Cikoski, C.; Tobin, H. J.

2004-12-01

As part of a broader investigation of the deep marine subsurface environment, the first biosphere-focused drilling expedition, Leg 201, of the Ocean Drilling Program (ODP) occupied five unique sites in the Peru Margin (in a 1200 km2 region centered at 10 S, 80E). These sites represent the entire range of shallow biogeological conditions associated with this convergent margin:deep-water, mixed clay-pelagic sediments ocean-ward of the trench; slope-apron and prism toe sediments at the deformation front; and several distinct lithostratigraphic sequences on the continental shelf. Microbial enumeration and pore-water geochemistry results show that each particular site is both consistent and unique--consistent in terms of general biotic quantity and activity as predicted by energy flux and redox potential given the depositional environment and sedimentary record, but unique at key biogeological boundaries such as lithologic and/or physical property interfaces. This research addresses questions related to our understanding of how and why these boundaries form by looking at poroelastic and hydrologic parameters measured at multiple scales, from sub-millimeter to several centimeters. The issue of measurement scale, especially in regard to permeability and diffusivity characterization, is vital to interpreting observations of biologically-mediated diagenetic fronts (e.g., dolomitic lenses, depth- or time-varying barite fronts). These parameters are derived from (i) hydrologic and wave propagation experiments, (ii) SEM images, and (iii) shipboard split-core measurements, and structured in a modified Biot poroelasticity framework. This approach also allows quantification of the local heterogeneity of these parameters at the scale applicable to (and controlled by) microbial life; these results can then be used to formulate predictive models of the impact of biogeochemical processes. Ultimately, these models could then be used in interpretation of new remote-sensed data (e.g., from borehole tools, high-frequency backscatter devices), a fundamental challenge for all types of biospheric imaging everywhere.

Selective Phylogenetic Analysis Targeted at 16S rRNA Genes of Thermophiles and Hyperthermophiles in Deep-Subsurface Geothermal Environments

PubMed Central

Kimura, Hiroyuki; Sugihara, Maki; Kato, Kenji; Hanada, Satoshi

2006-01-01

Deep-subsurface samples obtained by deep drilling are likely to be contaminated with mesophilic microorganisms in the drilling fluid, and this could affect determination of the community structure of the geothermal microflora using 16S rRNA gene clone library analysis. To eliminate possible contamination by PCR-amplified 16S rRNA genes from mesophiles, a combined thermal denaturation and enzyme digestion method, based on a strong correlation between the G+C content of the 16S rRNA gene and the optimum growth temperatures of most known prokaryotic cultures, was used prior to clone library construction. To validate this technique, hot spring fluid (76°C) and river water (14°C) were used to mimic a deep-subsurface sample contaminated with drilling fluid. After DNA extraction and PCR amplification of the 16S rRNA genes from individual samples separately, the amplified products from river water were observed to be denatured at 82°C and completely digested by exonuclease I (Exo I), while the amplified products from hot spring fluid remained intact after denaturation at 84°C and enzyme digestion with Exo I. DNAs extracted from the two samples were mixed and used as a template for amplification of the 16S rRNA genes. The amplified rRNA genes were denatured at 84°C and digested with Exo I before clone library construction. The results indicated that the 16S rRNA gene sequences from the river water were almost completely eliminated, whereas those from the hot spring fluid remained. PMID:16391020

Transformation of zinc-concentrate in surface and subsurface environments: Implications for assessing zinc mobility/toxicity and choosing an optimal remediation strategy.

PubMed

Kwon, Man Jae; Boyanov, Maxim I; Yang, Jung-Seok; Lee, Seunghak; Hwang, Yun Ho; Lee, Ju Yeon; Mishra, Bhoopesh; Kemner, Kenneth M

2017-07-01

Zinc contamination in near- and sub-surface environments is a serious threat to many ecosystems and to public health. Sufficient understanding of Zn speciation and transport mechanisms is therefore critical to evaluating its risk to the environment and to developing remediation strategies. The geochemical and mineralogical characteristics of contaminated soils in the vicinity of a Zn ore transportation route were thoroughly investigated using a variety of analytical techniques (sequential extraction, XRF, XRD, SEM, and XAFS). Imported Zn-concentrate (ZnS) was deposited in a receiving facility and dispersed over time to the surrounding roadside areas and rice-paddy soils. Subsequent physical and chemical weathering resulted in dispersal into the subsurface. The species identified in the contaminated areas included Zn-sulfide, Zn-carbonate, other O-coordinated Zn-minerals, and Zn species bound to Fe/Mn oxides or clays, as confirmed by XAFS spectroscopy and sequential extraction. The observed transformation from S-coordinated Zn to O-coordinated Zn associated with minerals suggests that this contaminant can change into more soluble and labile forms as a result of weathering. For the purpose of developing a soil washing remediation process, the contaminated samples were extracted with dilute acids. The extraction efficiency increased with the increase of O-coordinated Zn relative to S-coordinated Zn in the sediment. This study demonstrates that improved understanding of Zn speciation in contaminated soils is essential for well-informed decision making regarding metal mobility and toxicity, as well as for choosing an appropriate remediation strategy using soil washing. Copyright © 2017 Elsevier Ltd. All rights reserved.

Transformation of zinc-concentrate in surface and subsurface environments: Implications for assessing zinc mobility/toxicity and choosing an optimal remediation strategy

DOE PAGES

Kwon, Man Jae; Boyanov, Maxim I.; Yang, Jung -Seok; ...

2017-03-24

Zinc contamination in near- and sub-surface environments is a serious threat to many ecosystems and to public health. Sufficient understanding of Zn speciation and transport mechanisms is therefore critical to evaluating its risk to the environment and to developing remediation strategies. The geochemical and mineralogical characteristics of contaminated soils in the vicinity of a Zn ore transportation route were thoroughly investigated using a variety of analytical techniques (sequential extraction, XRF, XRD, SEM, and XAFS). Imported Zn-concentrate (ZnS) was deposited in a receiving facility and dispersed over time to the surrounding roadside areas and rice-paddy soils. Subsequent physical and chemical weatheringmore » resulted in dispersal into the subsurface. The species identified in the contaminated areas included Zn-sulfide, Zn-carbonate, other O-coordinated Zn-minerals, and Zn species bound to Fe/Mn oxides or clays, as confirmed by XAFS spectroscopy and sequential extraction. The observed transformation from S-coordinated Zn to O-coordinated Zn associated with minerals suggests that this contaminant can change into more soluble and labile forms as a result of weathering. For the purpose of developing a soil washing remediation process, the contaminated samples were extracted with dilute acids. The extraction efficiency increased with the increase of O-coordinated Zn relative to S-coordinated Zn in the sediment. Furthermore, this study demonstrates that improved understanding of Zn speciation in contaminated soils is essential for well-informed decision making regarding metal mobility and toxicity, as well as for choosing an appropriate remediation strategy using soil washing.« less

Looking for Life in Extreme Environments on Earth and Beyond: Professional Development Workshop for Educators

NASA Astrophysics Data System (ADS)

Droppo, R.; Pratt, L.; Suchecki, P. C.

2010-08-01

The Looking for Life in Extreme Environments workshop held at Indiana University Bloomington in July of 2009 was the first in a series of workshops for high-school teachers that are currently in development. The workshops' modules are based on the research of faculty members in the Departments of Geological Sciences, Biology, and Astronomy, the School of Education, and the School of Public and Environmental Affairs at Indiana University Bloomington; the modules use lessons from Exploring Deep-Subsurface Life. Earth Analogues for Possible Life on Mars: Lessons and Activities, curricular materials that were produced and edited by Lisa Pratt and Ruth Droppo and published by NASA in 2008. Exploring Deep-Subsurface Life is a workbook, a DVD (with closed-captioning), and a CD with the lessons in digital text format for adaptation to classroom needs and printing. Each lesson includes the National Education Standards that apply to the materials. The workbook's lessons are written with three considerations: Life Domains, Cellular Metabolism, and Extreme Environments and Microbes. Students are challenged to build, draw, measure, discuss, and participate in laboratory processes and experiments that help them understand and describe microbes and their environments. In the Capstone, the students write a grant proposal based on the three lessons' analogues. The DVD is collection of videotaped interviews with scientists in laboratories at Michigan State, Princeton, and Indiana University, who are working on water and gas samples they collected from deep gold mines in South Africa and the Canadian Arctic. The interview materials and some animated graphics are compiled into four video pieces that support and compliment the accompanying workbook lessons and activities, and offer students insight into the excitement of scientific discovery.

Scenario simulation based assessment of subsurface energy storage

NASA Astrophysics Data System (ADS)

Beyer, C.; Bauer, S.; Dahmke, A.

2014-12-01

Energy production from renewable sources such as solar or wind power is characterized by temporally varying power supply. The politically intended transition towards renewable energies in Germany („Energiewende") hence requires the installation of energy storage technologies to compensate for the fluctuating production. In this context, subsurface energy storage represents a viable option due to large potential storage capacities and the wide prevalence of suited geological formations. Technologies for subsurface energy storage comprise cavern or deep porous media storage of synthetic hydrogen or methane from electrolysis and methanization, or compressed air, as well as heat storage in shallow or moderately deep porous formations. Pressure build-up, fluid displacement or temperature changes induced by such operations may affect local and regional groundwater flow, geomechanical behavior, groundwater geochemistry and microbiology. Moreover, subsurface energy storage may interact and possibly be in conflict with other "uses" like drinking water abstraction or ecological goods and functions. An utilization of the subsurface for energy storage therefore requires an adequate system and process understanding for the evaluation and assessment of possible impacts of specific storage operations on other types of subsurface use, the affected environment and protected entities. This contribution presents the framework of the ANGUS+ project, in which tools and methods are developed for these types of assessments. Synthetic but still realistic scenarios of geological energy storage are derived and parameterized for representative North German storage sites by data acquisition and evaluation, and experimental work. Coupled numerical hydraulic, thermal, mechanical and reactive transport (THMC) simulation tools are developed and applied to simulate the energy storage and subsurface usage scenarios, which are analyzed for an assessment and generalization of the imposed THMC-processes, mutual effects and influences on protected entities. The scenario analyses allow the deduction of monitoring concepts as well as a first methodology for large scale spatial planning of the geological subsurface. This concept is illustrated for different storage options and their impacts in space and time.

Bacterial interactions and transport in geological formation of alumino-silica clays.

PubMed

Vu, Kien; Yang, Guang; Wang, Boya; Tawfiq, Kamal; Chen, Gang

2015-01-01

Bacterial transport in the subsurface is controlled by their interactions with the surrounding environment, which are determined by the surface properties of the geological formation and bacterial surfaces. In this research, surface thermodynamic properties of Escherichia coli and the geological formation of alumino-silica clays were characterized based on contact angle measurements, which were utilized to quantify the distance-dependent interactions between E. coli and the geological formation according to the traditional and extended Derjaguin, Landau, Verwey and Overbeek (DLVO) theory. E. coli attachment to alumino-silica clays was evaluated in laboratory columns under saturated and steady-state flow conditions. E. coli deposition coefficient and desorption coefficient were simulated using convection-dispersion transport models against E. coli breakthrough curves, which were then linked to interactions between E. coli and the geological formation. It was discovered that E. coli deposition was controlled by the long-ranged electrostatic interaction and E. coli desorption was attributed to the short-ranged Lifshitz-van der Waals and Lewis acid-base interactions. E. coli transport in three layers of different alumino-silica clays was further examined and the breakthrough curve was simulated using E. coli deposition coefficient and desorption coefficient obtained from their individual column experiments. The well-fitted simulation confirmed that E. coli transport observations were interaction-dependent phenomena between E. coli and the geological formation. Published by Elsevier B.V.

Diffusional Transport of Organic Solutes in Subsurface Clay Lenses and Layers

NASA Astrophysics Data System (ADS)

Demond, A. H.; Ayral, D.; Goltz, M. N.

2009-12-01

The storage of organic solvents in clay lenses and layers in the subsurface creates long-term contaminant sources. Because of the low hydraulic conductivities of clay, it is thought that organic movement into clay lenses occurs through the process of diffusion. The ratio of the effective diffusion coefficient in the porous medium and the diffusion coefficient in bulk water is usually given by the tortuosity factor which accounts for the reduced area and the increased path length in the porous medium. However, there is field evidence which suggests that the concentrations in these lenses exceed that which can be accounted for by simple diffusion. There are reports, for example, of tortuosity factors greater than 1.0, which theoretically is not possible. Clays such as montmorillonite or bentonite shrink and swell depending on water content, and similar behavior can occur in the presence of organic solvents. In fact, research has shown that the basal spacing of bentonite can decrease by 50% when permeated with heptane. Such contraction of the clay structure can lead to the formation of cracks and macropores, with a concomitant alteration of the diffusional pathways that solutes follow. Models formulated for diffusional transport in soil are available to calculate the tortuosity factor as a function of water content. In addition, models are available to simulate phenomena in which the diffusion coefficient is concentration dependent. However, calculations of diffusional transport using such models show that they may not adequately reflect the impact of the alteration of the clay structure. However, modeling the transport of organic solutes in clay as a dual-domain system with some minimal advective transport in macropores can yield tortuosity factors greater than 1.0. Thus, it appears the cracking of clay in contact with organic solvents and a resultant advective component to transport of the solute may be an explanation of field observations.

Distribution of surface deposits in the Gijón urban subsurface (NW Spain)

NASA Astrophysics Data System (ADS)

López-Fernández, Carlos; Pando, Luis; María Díaz-Díaz, Luis; Arias, Daniel; Flor-Blanco, Germán

2016-04-01

Gijón is the second most populous city (278.285 inhabitants in 2015) of the Spanish north coast. The urban subsurface is mostly formed (≈80%) by Quaternary sediments which exceeds 20 meters of thickness when cover the Jurassic carbonate basement (Gijón Formation). This work has allowed to know the spatial distribution of the different types of sediments in urban area. To do this, a GIS database was developed that contains data from more than 450 geotechnical reports. Information provided by fieldwork and the exploration of excavation works in progress throughout the city was also incorporated. Currently, the geodatabase developed comprises more than 1,400 site investigation points: boreholes, dynamic probing and trial pits. This has been supplemented with hundreds on-site and laboratory tests carried out on core samples of soils and rocks, performed following renowned testing standards. Quaternary formations, largely concealed below man-made fills, set up two main areas composed by granular and cohesive soils: the littoral zone at the northern urban perimeter and the continental zone at the southern sector. The first one, fluvial-marine deposits, consist of sandy sediments related to beach/dune systems and marsh deposits, with gravels, organogenic mud and layers of Holocene peat. The southern area is composed by residual clays -silt and coarse-grained soils to a lesser extent- linked to the dissolution of the Mesozoic substrate. Associated with these two types of deposits, two main aquifers can be differentiated. The thickness of the man-made deposits, fluvial-marine sediments and residual deposits was determined in this work. Thus, a 3-d model of Gijón subsurface at urban scale was obtained. A map of the Jurassic bedrock bedrock was also produced. Building construction works may be affected by the geotechnical behavior of the Quaternary deposits and the saturation of granular sediments., This is because the shallowness of the water table, the usual low bearing capacity and other issues such as clays consolidation or swelling phenomena. The use of concrete slabs, deep foundations and piled/anchored retaining walls is very common when projecting underground floors under these conditions.

Simulation and validation of concentrated subsurface lateral flow paths in an agricultural landscape

NASA Astrophysics Data System (ADS)

Zhu, Q.; Lin, H. S.

2009-08-01

The importance of soil water flow paths to the transport of nutrients and contaminants has long been recognized. However, effective means of detecting concentrated subsurface flow paths in a large landscape are still lacking. The flow direction and accumulation algorithm based on single-direction flow algorithm (D8) in GIS hydrologic modeling is a cost-effective way to simulate potential concentrated flow paths over a large area once relevant data are collected. This study tested the D8 algorithm for simulating concentrated lateral flow paths at three interfaces in soil profiles in a 19.5-ha agricultural landscape in central Pennsylvania, USA. These interfaces were (1) the interface between surface plowed layers of Ap1 and Ap2 horizons, (2) the interface with subsoil water-restricting clay layer where clay content increased to over 40%, and (3) the soil-bedrock interface. The simulated flow paths were validated through soil hydrologic monitoring, geophysical surveys, and observable soil morphological features. The results confirmed that concentrated subsurface lateral flow occurred at the interfaces with the clay layer and the underlying bedrock. At these two interfaces, the soils on the simulated flow paths were closer to saturation and showed more temporally unstable moisture dynamics than those off the simulated flow paths. Apparent electrical conductivity in the soil on the simulated flow paths was elevated and temporally unstable as compared to those outside the simulated paths. The soil cores collected from the simulated flow paths showed significantly higher Mn content at these interfaces than those away from the simulated paths. These results suggest that (1) the D8 algorithm is useful in simulating possible concentrated subsurface lateral flow paths if used with appropriate threshold value of contributing area and sufficiently detailed digital elevation model (DEM); (2) repeated electromagnetic surveys can reflect the temporal change of soil water storage and thus is a useful indicator of possible subsurface flow path over a large area; and (3) observable Mn distribution in soil profiles can be used as a simple indicator of water flow paths in soils and over the landscape; however, it does require sufficient soil sampling (by excavation or augering) to possibly infer landscape-scale subsurface flow paths. In areas where subsurface interface topography varies similarly with surface topography, surface DEM can be used to simulate potential subsurface lateral flow path reasonably so the cost associated with obtaining depth to subsurface water-restricting layer can be minimized.

Sedimentary and Paleoceanographic Responses to the South China Sea Basin Evolution

NASA Astrophysics Data System (ADS)

Jian, Z.; Liu, Z.; Jin, H.; Larsen, H. C.; Alvarez Zarikian, C. A.; Stock, J. M.; Sun, Z.; Klaus, A.

2017-12-01

As the largest marginal sea of the western Pacific, the South China Sea (SCS) has experienced a complete Wilson cycle, which had inevitably exerted a profound impact on the sedimentary environment and ocean circulation. Based on the results of four ODP/IODP expeditions to the SCS since 1999, together with other research data in this region, this study aims to explore the sedimentary and paleoceanographic responses to the tectonic events and basin evolution in the SCS. The early history of the SCS from land to deep sea was revealed by foraminiferal fauna: (1) The SCS evolved from continental shelf to an upper bathyal environment around the Oligocene/Eocene boundary, and significantly deepened at the turn of Oligocene/Miocene; (2) The early Oligocene SCS was deep but its shelf was narrow, evidenced by the Para-Tethys type deep-sea agglutinated benthic foraminifers and abundant transported shallow-water species at ODP Site 1148. Along with the SCS basin formation and the development of this semi-closed basin, the deep-sea benthic foraminiferal δ13C decreased when the Antarctic ice sheet began to reestablish at 14 Ma, the Indonesian Seaway and the southern SCS deep-water channel were closed at 10 Ma, the Luzon arc collided with Taiwan at 6.5 Ma, and the Bashi Strait was restricted at 1.2 Ma. Nd isotopes of shark teeth at ODP Site 1148 also support these inferences. An early to middle Miocene succession of red clay was found at all sites deeper than 3500 m water depth, which may be correlated to a basin-wide event related to deep circulation of oxygenated water from the western Pacific. After the earliest late Miocene carbonate crash, the red clay disappeared while the large carbonate platforms were drowned and remarkably shrank in the SCS. Late Miocene sediments display a succession of hemi-pelagic and turbidite deposits, indicating that the deep basin entered its modern state below the CCD. Frequent turbidites ended when Pliocene growth of deep-sea manganese-nodules reoccurred in the SCS. The data show that the SCS can serve as a natural laboratory to study the relationship between paleoceanographic changes and tectonic events.

Exploration of an Ancient Ocean World: Dawn at Ceres

NASA Astrophysics Data System (ADS)

Raymond, C. A.

2016-12-01

The Dawn mission completed its comprehensive mapping of Ceres, the only dwarf planet in the inner solar system, earlier this year and has since begun an extended mission to improve the quality of the data sets and test specific hypotheses. Prior to Dawn's arrival, Ceres was already known to be a dark, wet dwarf planet with evidence for altered minerals and water vapor emissions, from decades of ground- and space-based observations. Dawn arrived at Ceres in March of 2015 and found a very dark surface as expected, but unexpectedly found a heavily cratered surface that was punctuated by small extremely bright areas. Contrary to the prediction by pre-Dawn models of an ice-rich, viscously-relaxed smooth surface resulting from physical differentiation and freezing of an ancient subsurface ocean, its surface has many craters, implying a mechanically strong thick crust. Ceres is, however, missing the largest expected craters and is gravitationally relaxed at long wavelengths, implying that the strong crust overlies a weaker deep interior. This presented a challenge to the pre-Dawn differentiation model, but data were available to test it. Ceres' surface is dominated by dark material, phyllosilicates, ammoniated clays and carbonates. The ubiquitous presence of ammoniated minerals suggests formation in a colder environment, possibly in the outer solar system, while the distribution of minerals indicates that Ceres' interior experienced pervasive alteration. Water ice has been observed in fresh craters at high latitudes, and elemental measurements indicate the presence of water ice in the immediate subsurface. These observations, along with Ceres gravity field confirm that Ceres at least partially differentiated, releasing water and volatiles from the original chondritic material, and providing evidence for an ancient subsurface ocean. Evidence for past and continuing geologic activity on Ceres is found in the regional variations in topography and morphology of the surface. Smoother, apparently resurfaced areas are generally found at lower elevations and rougher areas have greater relief. Local morphology such as crater floor deposits, isolated mountains and the enigmatic bright areas indicate active processes on Ceres that likely involve brine-driven cryovolcanism.

Impact of CO 2 on the Evolution of Microbial Communities Exposed to Carbon Storage Conditions, Enhanced Oil Recovery, and CO 2 Leakage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna; Gregory, Kelvin B.; Lowry, Gregorgy V.

Geologic carbon storage (GCS) is a crucial part of a proposed mitigation strategy to reduce the anthropogenic carbon dioxide (CO 2) emissions to the atmosphere. During this process, CO 2 is injected as super critical carbon dioxide (SC-CO 2) in confined deep subsurface storage units, such as saline aquifers and depleted oil reservoirs. The deposition of vast amounts of CO 2 in subsurface geologic formations could unintentionally lead to CO 2 leakage into overlying freshwater aquifers. Introduction of CO 2 into these subsurface environments will greatly increase the CO 22 concentration and will create CO 2 concentration gradients that drivemore » changes in the microbial communities present. While it is expected that altered microbial communities will impact the biogeochemistry of the subsurface, there is no information available on how CO 2 gradients will impact these communities. The overarching goal of this project is to understand how CO 2 exposure will impact subsurface microbial communities at temperatures and pressures that are relevant to GCS and CO 2 leakage scenarios. To meet this goal, unfiltered, aqueous samples from a deep saline aquifer, a depleted oil reservoir, and a fresh water aquifer were exposed to varied concentrations of CO 2 at reservoir pressure and temperature. The microbial ecology of the samples was examined using molecular, DNA-based techniques. The results from these studies were also compared across the sites to determine any existing trends. Results reveal that increasing CO 2 leads to decreased DNA concentrations regardless of the site, suggesting that microbial processes will be significantly hindered or absent nearest the CO 2 injection/leakage plume where CO 2 concentrations are highest. At CO 2 exposures expected downgradient from the CO 2 plume, selected microorganisms emerged as dominant in the CO 2 exposed conditions. Results suggest that the altered microbial community was site specific and highly dependent on pH. The site-dependent results suggest a limited ability to predict the emerging dominant species for other CO 2 exposed environments. This study improves the understanding of how a subsurface microbial community may respond to conditions expected from GCS and CO 2 leakage. This is the first step for understanding how a CO 2-altered microbial community may impact injectivity, permanence of stored CO 2, and subsurface water quality. Future work with microbial communities from new subsurface sites would increase the current understanding of this project. Additionally, incorporation of metagenomic methods would increase understanding of potential microbial processes that may be prevalent in CO 2 exposed environments.« less

Impact of CO 2 on the Evolution of Microbial Communities Exposed to Carbon Storage Conditions, Enhanced Oil Recovery, and CO 2 Leakage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna M.; Gregory, Kelvin B.; Lowry, Gregory V.

Geologic carbon storage (GCS) is a crucial part of a proposed mitigation strategy to reduce the anthropogenic carbon dioxide (CO 2) emissions to the atmosphere. During this process, CO 2 is injected as super critical carbon dioxide (SC-CO 2) in confined deep subsurface storage units, such as saline aquifers and depleted oil reservoirs. The deposition of vast amounts of CO 2 in subsurface geologic formations could unintentionally lead to CO 2 leakage into overlying freshwater aquifers. Introduction of CO 2 into these subsurface environments will greatly increase the CO 2 concentration and will create CO 2 concentration gradients that drivemore » changes in the microbial communities present. While it is expected that altered microbial communities will impact the biogeochemistry of the subsurface, there is no information available on how CO 2 gradients will impact these communities. The overarching goal of this project is to understand how CO 2 exposure will impact subsurface microbial communities at temperatures and pressures that are relevant to GCS and CO 2 leakage scenarios. To meet this goal, unfiltered, aqueous samples from a deep saline aquifer, a depleted oil reservoir, and a fresh water aquifer were exposed to varied concentrations of CO 2 at reservoir pressure and temperature. The microbial ecology of the samples was examined using molecular, DNA-based techniques. The results from these studies were also compared across the sites to determine any existing trends. Results reveal that increasing CO 2 leads to decreased DNA concentrations regardless of the site, suggesting that microbial processes will be significantly hindered or absent nearest the CO 2 injection/leakage plume where CO 2 concentrations are highest. At CO 2 exposures expected downgradient from the CO 2 plume, selected microorganisms emerged as dominant in the CO 2 exposed conditions. Results suggest that the altered microbial community was site specific and highly dependent on pH. The site-dependent results suggest a limited ability to predict the emerging dominant species for other CO 2-exposed environments. This study improves the understanding of how a subsurface microbial community may respond to conditions expected from GCS and CO 2 leakage. This is the first step for understanding how a CO 2-altered microbial community may impact injectivity, permanence of stored CO 2, and subsurface water quality. Future work with microbial communities from new subsurface sites would increase the current understanding of this project. Additionally, incorporation of metagenomic methods would increase understanding of potential microbial processes that may be prevalent in CO 2 exposed environments.« less

Anaerobic decomposition of humic substances by Clostridium from the deep subsurface

PubMed Central

Ueno, Akio; Shimizu, Satoru; Tamamura, Shuji; Okuyama, Hidetoshi; Naganuma, Takeshi; Kaneko, Katsuhiko

2016-01-01

Decomposition of humic substances (HSs) is a slow and cryptic but non-negligible component of carbon cycling in sediments. Aerobic decomposition of HSs by microorganisms in the surface environment has been well documented; however, the mechanism of anaerobic microbial decomposition of HSs is not completely understood. Moreover, no microorganisms capable of anaerobic decomposition of HSs have been isolated. Here, we report the anaerobic decomposition of humic acids (HAs) by the anaerobic bacterium Clostridium sp. HSAI-1 isolated from the deep terrestrial subsurface. The use of 14C-labelled polycatechol as an HA analogue demonstrated that the bacterium decomposed this substance up to 7.4% over 14 days. The decomposition of commercial and natural HAs by the bacterium yielded lower molecular mass fractions, as determined using high-performance size-exclusion chromatography. Fourier transform infrared spectroscopy revealed the removal of carboxyl groups and polysaccharide-related substances, as well as the generation of aliphatic components, amide and aromatic groups. Therefore, our results suggest that Clostridium sp. HSAI-1 anaerobically decomposes and transforms HSs. This study improves our understanding of the anaerobic decomposition of HSs in the hidden carbon cycling in the Earth’s subsurface. PMID:26743007

Satellite-derived mineral mapping and monitoring of weathering, deposition and erosion

PubMed Central

Cudahy, Thomas; Caccetta, Mike; Thomas, Matilda; Hewson, Robert; Abrams, Michael; Kato, Masatane; Kashimura, Osamu; Ninomiya, Yoshiki; Yamaguchi, Yasushi; Collings, Simon; Laukamp, Carsten; Ong, Cindy; Lau, Ian; Rodger, Andrew; Chia, Joanne; Warren, Peter; Woodcock, Robert; Fraser, Ryan; Rankine, Terry; Vote, Josh; de Caritat, Patrice; English, Pauline; Meyer, Dave; Doescher, Chris; Fu, Bihong; Shi, Pilong; Mitchell, Ross

2016-01-01

The Earth’s surface comprises minerals diagnostic of weathering, deposition and erosion. The first continental-scale mineral maps generated from an imaging satellite with spectral bands designed to measure clays, quartz and other minerals were released in 2012 for Australia. Here we show how these satellite mineral maps improve our understanding of weathering, erosional and depositional processes in the context of changing weather, climate and tectonics. The clay composition map shows how kaolinite has developed over tectonically stable continental crust in response to deep weathering during northwardly migrating tropical conditions from 45 to 10 Ma. The same clay composition map, in combination with one sensitive to water content, enables the discrimination of illite from montmorillonite clays that typically develop in large depositional environments over thin (sinking) continental crust such as the Lake Eyre Basin. Cutting across these clay patterns are sandy deserts that developed <10 Ma and are well mapped using another satellite product sensitive to the particle size of silicate minerals. This product can also be used to measure temporal gains/losses of surface clay caused by periodic wind erosion (dust) and rainfall inundation (flood) events. The accuracy and information content of these satellite mineral maps are validated using published data. PMID:27025192

Spatial Statistics of Deep-Water Ambient Noise; Dispersion Relations for Sound Waves and Shear Waves

DTIC Science & Technology

2014-09-30

marine sediments. New focus is on very fine- grained sediments (silt and clay ). OBJECTIVES 1) The scientific objective of the deep-water ambient...density, grain size and overburden pressure. A new focus is on the inter-particle cohesive forces in silts and clays and their role in controlling wave...algebraic expressions. The GS theory is the basis for new research on very fine-grained sediments (silts and clays ), in which inter-granular cohesion is

Aromatic-degrading Sphingomonas isolates from the deep subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Romine, M.F.; Balkwill, D.L.

An obligately aerobic chemoheterotrophic bacterium (strain F199) previously isolated from Southeast Coastal Plain subsurface sediments and shown to degrade toluene, naphthalene, and other aromatic compounds was characterized by analysis of its 16S rRNA nucleotide base sequence and cellular lipid composition. Strain F199 contained 2-OH14:0 and 18:1{omega}7c as the predominant cellular fatty acids and sphingolipids that are characteristic of the genus Sphingomonas. Phylogenetic analysis of its 16SrRNA sequence indicated that F199 was most closely related to Sphingomonas capsulata among the bacteria currently in the Ribosomal Database. Five additional isolates from deep Southeast Coastal Plain sediments were determined by 16S rRNA sequencemore » analysis to be closely related to F199. These strains also contained characteristic sphingolipids. Four of these five strains could also grow on a broad range of aromatic compounds and could mineralize [{sup 14C}]toluene and [{sup 14C}]naphthalene. S. capsulata (ATCC 14666), Sphingomonas paucimobiolis (ATCC 29837), and one of the subsurface isolates were unable to grow on any of the aromatic compounds or mineralize toluene or naphthalene. These results indicate that bacteria within the genus Sphingomonas are present in Southeast Coastal Plain subsurface sediments and that the capacity for degrading a broad range of substituted aromatic compounds appears to be common among Sphingomonas species from this environment. 41 refs., 2 figs., 5 tabs.« less

Ecogenomic characterization of a marine microorganism belonging to a Firmicutes lineage that is widespread in both terrestrial and oceanic subsurface environments

NASA Astrophysics Data System (ADS)

Jungbluth, S.; Glavina del Rio, T.; Tringe, S. G.; Stepanauskas, R.; Rappe, M. S.

2015-12-01

Large-volumes of basalt-hosted fluids from the sediment-covered subseafloor were collected in July 2011 from a horizon extending 29-117 meters below the sediment-rock interface at borehole 1362B, as well as from a deep horizon extending 193-292 meters below the sediment-rock interface at borehole 1362A, which are two of the latest generation of borehole observatories on the Juan de Fuca Ridge flank in the Northeast Pacific Ocean. Environmental DNA was sequenced from one fluid sample collected from each borehole, and a genomic bin related to the terrestrial Candidatus Desulforudis audaxviator lineage within the Firmicutes phylum of bacteria was identified. The near-complete bacterial genome, herein named Candidatus Desulfopertinax inferamarinus, is composed of six scaffolds totaling 1.78 Mbp in length. Despite vast differences in geography and environment of origin, phylogenomic analysis indicate that D. inferamarinus and D. audaxviator form a monophyletic clade to the exclusion of all other sequenced genomes. Similar to its terrestrial relative, the draft genome of the marine D. inferamarinus revealed a motile, sporulating, sulfate-reducing, chemoautotrophic thermophile that is capable of synthesizing all amino acids and fixing inorganic carbon via the Wood-Ljungdahl pathway. Unlike the terrestrial clade, relatively few integrases and transposases were identified. The marine genome described here provides evidence that a life-style adapted to the isolated deep subsurface environment is a general feature of the broader, globally-distributed Desulforudis/Desulfopertinax lineage and provides insight into the adaptations required for microbial life in the marine versus terrestrial deep biospheres.

Subsurface microbial habitats on Mars

NASA Technical Reports Server (NTRS)

Boston, P. J.; Mckay, C. P.

1991-01-01

We developed scenarios for shallow and deep subsurface cryptic niches for microbial life on Mars. Such habitats could have considerably prolonged the persistence of life on Mars as surface conditions became increasingly inhospitable. The scenarios rely on geothermal hot spots existing below the near or deep subsurface of Mars. Recent advances in the comparatively new field of deep subsurface microbiology have revealed previously unsuspected rich aerobic and anaerobic microbal communities far below the surface of the Earth. Such habitats, protected from the grim surface conditions on Mars, could receive warmth from below and maintain water in its liquid state. In addition, geothermally or volcanically reduced gases percolating from below through a microbiologically active zone could provide the reducing power needed for a closed or semi-closed microbial ecosystem to thrive.

New Bio-Indicators for Long Term Natural Attenuation of Monoaromatic Compounds in Deep Terrestrial Aquifers.

PubMed

Aüllo, Thomas; Berlendis, Sabrina; Lascourrèges, Jean-François; Dessort, Daniel; Duclerc, Dominique; Saint-Laurent, Stéphanie; Schraauwers, Blandine; Mas, Johan; Patriarche, Delphine; Boesinger, Cécile; Magot, Michel; Ranchou-Peyruse, Anthony

2016-01-01

Deep subsurface aquifers despite difficult access, represent important water resources and, at the same time, are key locations for subsurface engineering activities for the oil and gas industries, geothermal energy, and CO2 or energy storage. Formation water originating from a 760 m-deep geological gas storage aquifer was sampled and microcosms were set up to test the biodegradation potential of BTEX by indigenous microorganisms. The microbial community diversity was studied using molecular approaches based on 16S rRNA genes. After a long incubation period, with several subcultures, a sulfate-reducing consortium composed of only two Desulfotomaculum populations was observed able to degrade benzene, toluene, and ethylbenzene, extending the number of hydrocarbonoclastic-related species among the Desulfotomaculum genus. Furthermore, we were able to couple specific carbon and hydrogen isotopic fractionation during benzene removal and the results obtained by dual compound specific isotope analysis (C = -2.4‰ ± 0.3‰; H = -57‰ ± 0.98‰; AKIEC: 1.0146 ± 0.0009, and AKIEH: 1.5184 ± 0.0283) were close to those obtained previously in sulfate-reducing conditions: this finding could confirm the existence of a common enzymatic reaction involving sulfate-reducers to activate benzene anaerobically. Although we cannot assign the role of each population of Desulfotomaculum in the mono-aromatic hydrocarbon degradation, this study suggests an important role of the genus Desulfotomaculum as potential biodegrader among indigenous populations in subsurface habitats. This community represents the simplest model of benzene-degrading anaerobes originating from the deepest subterranean settings ever described. As Desulfotomaculum species are often encountered in subsurface environments, this study provides some interesting results for assessing the natural response of these specific hydrologic systems in response to BTEX contamination during remediation projects.

Archaeal Viruses Contribute to the Novel Viral Assemblage Inhabiting Oceanic, Basalt-Hosted Deep Subsurface Crustal Fluids

NASA Astrophysics Data System (ADS)

Nigro, O. D.; Rappe, M. S.; Jungbluth, S.; Lin, H. T.; Steward, G.

2015-12-01

Fluids contained in the basalt-hosted deep subsurface of the world's oceans represent one of the most inaccessible and understudied biospheres on earth. Recent improvements in sampling infrastructure have allowed us to collect large volumes of crustal fluids (~104 L) from Circulation Obviation Retrofit Kits (CORKs) placed in boreholes located on the eastern flank of the Juan de Fuca Ridge (JdFR). We detected viruses within these fluids by TEM and epifluorescence microscopy in samples collected from 2010 to 2014. Viral abundance, determined by epifluorescence counts, indicated that concentrations of viruses in subsurface basement fluids (~105 ml-1) are lower than the overlying seawater, but are higher in abundance than microbial cells in the same samples. Analysis of TEM images revealed distinct viral morphologies (rod and spindle-shaped) that resemble the morphologies of viral families infecting archaea. There are very few, if any, direct observations of these viral morphologies in marine samples, although they have been observed in enrichment cultures and their signature genes detected in metagenomic studies from hydrothermal vents and marine sediments. Analysis of metagenomes from the JdFR crustal fluids revealed sequences with homology to archaeal viruses from the rudiviridae, bicaudaviridae and fuselloviridae. Prokaryotic communities in fluids percolating through the basaltic basement rock of the JdFR flank are distinct from those inhabiting the overlying sediments and seawater. Similarly, our data support the idea that the viral assemblage in these fluids is distinct from viral assemblages in other marine and terrestrial aquatic environments. Our data also suggest that viruses contribute to the mortality of deep subsurface prokaryotes through cell lysis, and viruses may alter the genetic potential of their hosts through the processes of lysogenic conversion and horizontal gene transfer.

Fungal diversity from deep marine subsurface sediments (IODP 317, Canterbury Basin, New Zealand)

NASA Astrophysics Data System (ADS)

Redou, V.; Arzur, D.; Burgaud, G.; Barbier, G.

2012-12-01

Recent years have seen a growing interest regarding micro-eukaryotic communities in extreme environments as a third microbial domain after Bacteria and Archaea. However, knowledge is still scarce and the diversity of micro-eukaryotes in such environments remains hidden and their ecological role unknown. Our research program is based on the deep sedimentary layers of the Canterbury Basin in New Zealand (IODP 317) from the subsurface to the record depth of 1884 meters below seafloor. The objectives of our study are (i) to assess the genetic diversity of fungi in deep-sea sediments and (ii) identify the functional part in order to better understand the origin and the ecological role of fungal communities in this extreme ecosystem. Fingerprinting-based methods using capillary electrophoresis single-strand conformation polymorphism and denaturing high-performance liquid chromatography were used as a first step to raise our objectives. Molecular fungal diversity was assessed using amplification of ITS1 (Internal Transcribed Spacer 1) as a biomarker on 11 samples sediments from 3.76 to 1884 meters below seafloor. Fungal molecular signatures were detected throughout the sediment core. The phyla Ascomycota and Basidiomycota were revealed with DNA as well as cDNA. Most of the phylotypes are affiliated to environmental sequences and some to common fungal cultured species. The discovery of a present and metabolically active fungal component in this unique ecosystem allows some interesting first hypotheses that will be further combined to culture-based methods and deeper molecular methods (454 pyrosequencing) to highlight essential informations regarding physiology and ecological role of fungal communities in deep marine sediments.

Deep Vadose Zone Treatability Test of Soil Desiccation for the Hanford Central Plateau: Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Truex, Michael J.; Chronister, Glen B.; Strickland, Christopher E.

Some of the inorganic and radionuclide contaminants in the deep vadose zone at the Hanford Site are at depths where direct exposure pathways are not of concern, but may need to be remediated to protect groundwater. The Department of Energy developed a treatability test program for technologies to address Tc-99 and uranium in the deep vadose zone. These contaminants are mobile in the subsurface environment, have been detected at high concentrations deep in the vadose zone, and at some locations have reached groundwater. The treatability test of desiccation described herein was conducted as an element of the deep vadose zonemore » treatability test program. Desiccation was shown to be a potentially effective vadose zone remediation technology to protect groundwater when used in conjunction with a surface infiltration barrier.« less

Spatial variation in herbicide leaching from a marine clay soil via subsurface drains

PubMed Central

Ulén, Barbro M; Larsbo, Mats; Kreuger, Jenny K; Svanbäck, Annika

2013-01-01

Background Subsurface transport via tile drains can significantly contribute to pesticide contamination of surface waters. The spatial variation in subsurface leaching of normally applied herbicides was examined together with phosphorus losses in 24 experimental plots with water sampled flow-proportionally. The study site was a flat, tile-drained area with 60% marine clay in the topsoil in southeast Sweden. The objectives were to quantify the leaching of frequently used herbicides from a tile drained cracking clay soil and to evaluate the variation in leaching within the experimental area and relate this to topsoil management practices (tillage method and structure liming). Results In summer 2009, 0.14, 0.22 and 1.62%, respectively, of simultaneously applied amounts of MCPA, fluroxypyr and clopyralid were leached by heavy rain five days after spraying. In summer 2011, on average 0.70% of applied bentazone was leached by short bursts of intensive rain 12 days after application. Peak flow concentrations for 50% of the treated area for MCPA and 33% for bentazone exceeded the Swedish no-effect guideline values for aquatic ecosystems. Approximately 0.08% of the glyphosate applied was leached in dissolved form in the winters of 2008/2009 and 2010/2011. Based on measurements of glyphosate in particulate form, total glyphosate losses were twice as high (0.16%) in the second winter. The spatial inter-plot variation was large (72–115%) for all five herbicides studied, despite small variations (25%) in water discharge. Conclusions The study shows the importance of local scale soil transport properties for herbicide leaching in cracking clay soils. © 2013 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. PMID:23658148

Halite-clay interplay in the Israeli Messinian

NASA Astrophysics Data System (ADS)

Cohen, Avigdor

1993-08-01

The Mavqi'im Formation in Israel is the equivalent of the evaporite part of the Messinian stage (Upper Miocene). It is found in the subsurface in the offshore with eastward extensions into ancient buried channels in the coastal plain and in the Jordan Rift valley and in a few outcrops southwest of Lake Tiberias. Most of the anhydrite horizons can be used as correlation markers. Lateral facies changes between halite, anhydrite and shales can be traced. This is interpreted as contemporaneous sedimentation in giant marine salt ponds (halite and anhydrite) and in drowned desert valleys and/or salt-marsh coasts (shales with sabkha-like anhydrites). Another type of shale is that directly underflooring halite horizons. It is regarded as deep-water halite facies, in contrast with shallow-water facies where halite overlies gypsum and/or anhydrite. A "twofold bull's-eye model" is proposed, which assumes that either: (a) sedimentation of gypsum and halite was 'separated in space'—i.e., gypsum was deposited in the part of the basin proximal to oceanic inlets or on shallow shelves, whereas halite was deposited in the central deep part of the basin or on its distal edge; or (b) sedimentation of gypsum and halite was not contemporaneous, or 'separated in time'—i.e., in the deep parts of the basin gypsum precipitates were disintegrated by anaerobic bacteria which removed the sulfate. The lower limit of gypsum deposition is considered to be 200 m, which is the lower limit of the photic and wave zones. In the Israeli Messinian there is no difference between the clay minerals of marine and fluvial shales. Differentiation of marine shales from fluvial and mud flat shales is based on their geometry, i.e., thin persistent horizons spreading across the whole area versus thick shale lenses wedging out in 500-1000 m distances. Another consideration is the palynologic and microfauna remains: in the first case the cyst/pollen ratio may be as high as 100, whereas in the second pollen is dominant.

Oligo-Miocene reservoir sequence characterization and structuring in the Sisseb El Alem-Kalaa Kebira regions (Northeastern Tunisia)

NASA Astrophysics Data System (ADS)

Houatmia, Faten; Khomsi, Sami; Bédir, Mourad

2015-11-01

The Sisseb El Alem-Enfidha basin is located in the northeastern Tunisia, It is borded by Nadhour - Saouaf syncline to the north, Kairouan plain to the south, the Mediterranean Sea to the east and Tunisian Atlassic "dorsale" to the west. Oligocene and Miocene deltaic deposits present the main potential deep aquifers in this basin with high porosity (25%-30%). The interpretation of twenty seismic reflection profiles, calibrated by wire line logging data of twelve oil wells, hydraulic wells and geologic field sections highlighted the impact of tectonics on the structuring geometry of Oligo-Miocene sandstones reservoirs and their distribution in raised structures and subsurface depressions. Miocene seismostratigraphy analysis from Ain Ghrab Formation (Langhian) to the Segui Formation (Quaternary) showed five third-order seismic sequence deposits and nine extended lenticular sandy bodies reservoirs limited by toplap and downlap surfaces unconformities, Oligocene deposits presented also five third- order seismic sequences with five extended lenticular sandy bodies reservoirs. The Depth and the thickness maps of these sequence reservoir packages exhibited the structuring of this basin in sub-basins characterized by important lateral and vertical geometric and thichness variations. Petroleum wells wire line logging correlation with clay volume calculation showed an heterogeneous multilayer reservoirs of Oligocene and Miocene formed by the arrangement of fourteen sandstone bodies being able to be good reservoirs, separated by impermeable clay packages and affected by faults. Reservoirs levels correspond mainly to the lower system tract (LST) of sequences. Intensive fracturing by deep seated faults bounding the different sub-basins play a great role for water surface recharge and inter-layer circulations between affected reservoirs. The total pore volume of the Oligo-Miocene reservoir sandy bodies in the study area, is estimated to about 4 × 1012 m3 and equivalent to 4 × 109 m3 of deep water reserves.

Computational Evaluation of Mg–Salen Compounds as Subsurface Fluid Tracers: Molecular Dynamics Simulations in Toluene–Water Mixtures and Clay Mineral Nanopores

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greathouse, Jeffery A.; Boyle, Timothy J.; Kemp, Richard A.

Molecular tracers that can be selectively placed underground and uniquely identified at the surface using simple on-site spectroscopic methods would significantly enhance subsurface fluid monitoring capabilities. To ensure their widespread utility, the solubility of these tracers must be easily tuned to oil- or water-wet conditions as well as reducing or eliminating their propensity to adsorb onto subsurface rock and/or mineral phases. In this work, molecular dynamics simulations were used to investigate the relative solubilities and mineral surface adsorption properties of three candidate tracer compounds comprising Mg–salen derivatives of varying degrees of hydrophilic character. Simulations in water–toluene liquid mixtures indicate thatmore » the partitioning of each Mg–salen compound relative to the interface is strongly influenced by the degree of hydrophobicity of the compound. Simulations of these complexes in fluid-filled mineral nanopores containing neutral (kaolinite) and negatively charged (montmorillonite) mineral surfaces reveal that adsorption tendencies depend upon a variety of parameters, including tracer chemical properties, mineral surface type, and solvent type (water or toluene). Simulation snapshots and averaged density profiles reveal insight into the solvation and adsorption mechanisms that control the partitioning of these complexes in mixed liquid phases and nanopore environments. As a result, this work demonstrates the utility of molecular simulation in the design and screening of molecular tracers for use in subsurface applications.« less

Computational Evaluation of Mg–Salen Compounds as Subsurface Fluid Tracers: Molecular Dynamics Simulations in Toluene–Water Mixtures and Clay Mineral Nanopores

DOE PAGES

Greathouse, Jeffery A.; Boyle, Timothy J.; Kemp, Richard A.

2018-04-11

Molecular tracers that can be selectively placed underground and uniquely identified at the surface using simple on-site spectroscopic methods would significantly enhance subsurface fluid monitoring capabilities. To ensure their widespread utility, the solubility of these tracers must be easily tuned to oil- or water-wet conditions as well as reducing or eliminating their propensity to adsorb onto subsurface rock and/or mineral phases. In this work, molecular dynamics simulations were used to investigate the relative solubilities and mineral surface adsorption properties of three candidate tracer compounds comprising Mg–salen derivatives of varying degrees of hydrophilic character. Simulations in water–toluene liquid mixtures indicate thatmore » the partitioning of each Mg–salen compound relative to the interface is strongly influenced by the degree of hydrophobicity of the compound. Simulations of these complexes in fluid-filled mineral nanopores containing neutral (kaolinite) and negatively charged (montmorillonite) mineral surfaces reveal that adsorption tendencies depend upon a variety of parameters, including tracer chemical properties, mineral surface type, and solvent type (water or toluene). Simulation snapshots and averaged density profiles reveal insight into the solvation and adsorption mechanisms that control the partitioning of these complexes in mixed liquid phases and nanopore environments. As a result, this work demonstrates the utility of molecular simulation in the design and screening of molecular tracers for use in subsurface applications.« less

Assessing the role of clay authigenesis in the seawater potassium cycle: A paired K and Mg isotope study of deep-sea pore fluids

NASA Astrophysics Data System (ADS)

Santiago Ramos, D. P.; Higgins, J. A.

2017-12-01

In situ formation of clays (clay authigenesis) in marine sediments and altered oceanic crust is an important sink of a number of seawater cations. In particular, clay authigenesis is a major, and yet unconstrained, flux in the global seawater potassium cycle. Potassium is the fourth most abundant cation in the ocean, which constitutes an isotopically enriched K reservoir (δ41K 0‰) compared to the solid Earth (δ41K -0.5‰). Understanding what processes control this isotopic offset is the main goal of this study. Here we use a multi-collector inductively coupled plasma mass spectrometer (MC-ICP-MS) to measure the K and Mg isotope ratios (41K/39K and 26Mg/24Mg) of deep-sea pore fluids in order to assess the effects of clay formation in the K isotope composition of seawater. Mg isotopes are used as an independent proxy for clay formation, since marine authigenic clays are isotopically distinct from their detrital counterpart, an abundant component of marine sediments. Our study sites (ODP/IODP 1052, U1378, U1395, U1403) vary in location, lithology, age and sedimentation rates; however, pore-fluids from all sites show decreasing K concentrations with depth, suggesting potassium uptake into the sediments. We find that although K concentration trends are similar across all sites, measured δ41K values vary significantly. Results from 1-D diffusion-advection-reaction models suggest that these differences in isotopic profiles arise from a complex interplay between sedimentation rate and K isotopic fractionation during clay formation, aqueous K diffusion and ion exchange reactions. Further, model simulations yield fractionation factors between 0.9980 and 1.0000 for clay formation in deep-sea sediments. Despite the minor contribution of these deep-sea pore-fluids as sinks of seawater K, the processes responsible for K isotope fractionation in our study sites (clay formation and aqueous K diffusion) are also observed at shallow marine systems (major K sinks) and are thus likely responsible for setting the K isotopic composition of seawater.

Physical and chemical controls on habitats for life in the deep subsurface beneath continents and ice

PubMed Central

Parnell, John; McMahon, Sean

2016-01-01

The distribution of life in the continental subsurface is likely controlled by a range of physical and chemical factors. The fundamental requirements are for space to live, carbon for biomass and energy for metabolic activity. These are inter-related, such that adequate permeability is required to maintain a supply of nutrients, and facies interfaces invite colonization by juxtaposing porous habitats with nutrient-rich mudrocks. Viable communities extend to several kilometres depth, diminishing downwards with decreasing porosity. Carbon is contributed by recycling of organic matter originally fixed by photosynthesis, and chemoautotrophy using crustal carbon dioxide and methane. In the shallow crust, the recycled component predominates, as processed kerogen or hydrocarbons, but abiotic carbon sources may be significant in deeper, metamorphosed crust. Hydrogen to fuel chemosynthesis is available from radiolysis, mechanical deformation and mineral alteration. Activity in the subcontinental deep biosphere can be traced through the geological record back to the Precambrian. Before the colonization of the Earth's surface by land plants, a geologically recent event, subsurface life probably dominated the planet's biomass. In regions of thick ice sheets the base of the ice sheet, where liquid water is stable and a sediment layer is created by glacial erosion, can be regarded as a deep biosphere habitat. This environment may be rich in dissolved organic carbon and nutrients accumulated from dissolving ice, and from weathering of the bedrock and the sediment layer. PMID:26667907

Al Umchaimin depression, Western Iraq: An impact structure?

NASA Astrophysics Data System (ADS)

Underwood, James R., Jr.

Al Umchaimin, in Arabic 'hiding place' or 'place of ambush', is located at latitude 32 degrees 35.5 N and longitude 39 degrees 25 E. The nearly circular depression averages 2.75 km in diameter and is 33-42 m deep. It is floored with fine-grained, clay-rich deposits, estimated to be 36 m thick, the surface of which shows well-developed desiccation fissures or mudcracks when dry. Because of its nearly circular planimetric shape and its apparent isolation from other surface and subsurface features, it has been considered by some to be a possible meteorite impact structure and by others to be a surface collapse feature that originated following removal of magma from the subsurface as the magma extruded elsewhere. Al Umchaimin was listed in the U.S. Geological Survey tabulation of 110 structures worldwide for which a meteorite impact origin had been suggested. It was placed in Category 6 Structures for which more data are required for classification. It is concluded that, on the basis of the studies that have been made of Al Umchaimin and on the basis of the brief site visit made, Al Umchaimin probably is not an impact structure but most likely resulted from the enlargement and coalescence of sink holes and eventual collapse of the roof material into the resulting cavity.

Al Umchaimin depression, Western Iraq: An impact structure?

NASA Technical Reports Server (NTRS)

Underwood, James R., Jr.

1992-01-01

Al Umchaimin, in Arabic 'hiding place' or 'place of ambush', is located at latitude 32 degrees 35.5 N and longitude 39 degrees 25 E. The nearly circular depression averages 2.75 km in diameter and is 33-42 m deep. It is floored with fine-grained, clay-rich deposits, estimated to be 36 m thick, the surface of which shows well-developed desiccation fissures or mudcracks when dry. Because of its nearly circular planimetric shape and its apparent isolation from other surface and subsurface features, it has been considered by some to be a possible meteorite impact structure and by others to be a surface collapse feature that originated following removal of magma from the subsurface as the magma extruded elsewhere. Al Umchaimin was listed in the U.S. Geological Survey tabulation of 110 structures worldwide for which a meteorite impact origin had been suggested. It was placed in Category 6 Structures for which more data are required for classification. It is concluded that, on the basis of the studies that have been made of Al Umchaimin and on the basis of the brief site visit made, Al Umchaimin probably is not an impact structure but most likely resulted from the enlargement and coalescence of sink holes and eventual collapse of the roof material into the resulting cavity.

A High-Resolution Multitechniques Approach to Characterize Bio-Organo-Mineral Associations Within Rock Samples: Tracking Biological vs Abiotic Processes? Towards a Better Understanding of the Deep Carbon Cycle.

NASA Astrophysics Data System (ADS)

Pisapia, C.

2015-12-01

Among all elements, carbon plays one of the major roles for the sustainability of life on Earth. Past considerations of the carbon cycle have mainly focused on surface processes occurring at the atmosphere, oceans and shallow crustal environments. By contrast, little is known about the Deep Carbon cycle whereas both geochemical and biological processes may induce organic carbon production and/or consumption at depth. Indeed, the nowadays-recognized capability of geochemical processes such as serpentinization to generate abiotic organic compounds as well as the existence of a potentially important intraterrestrial life raises questions about the limit of biotic/abiotic carbon on Earth's deep interior and how it impacts global biogeochemical cycles. It is then mandatory to increase our knowledge on the nature and extent of carbon reservoirs along with their sources, sinks and fluxes in the subsurface. This implies to be able to finely characterize organomineral associations within crustal rocks although it might be hampered by the scarceness and heterogeneous micrometric spatial distribution of organic molecules in natural rocks. We then developed an in situ analytical strategy based on the combination of high-resolution techniques to track organic molecules at the pore level in natural rocks and to determine their biological or abiotic origin. We associated classical high-resolution techniques and synchrotron-based imaging techniques in order to characterize their nature and localization (SEM/TEM, coupled CLSM/Raman spectroscopy, Tof-SIMS) along with their 3D-distribution relatively to mineral phases (S-FTIR, S-DeepUV, XANES, Biphoton microscopy). The effectiveness of this approach to shed light on the speciation and nature of carbon in subsurface environments will be illustrated through the study of (i) subsurface ecosystems and abiotic organic carbon within ultramafic rocks of the oceanic lithosphere as putative analogs for the nature and functioning of primitive ecosystems on Earth and of (ii) ecosystems inhabiting Archean craton and potentially playing a role in punk-rock karstification processes and rocks weathering.

Are Clay Minerals a Climate Constraint? A Review of Prior Data and New Insights on Martian "Weathering Sequences"

NASA Astrophysics Data System (ADS)

Ehlmann, B. L.; Dundar, M.

2016-12-01

Most clay minerals on Mars are Fe/Mg smectites or chlorites, which typically form from mafic protoliths in aqueous chemical systems that are relatively closed and thus require liquid water but not large amounts of water throughput and large-scale chemical leaching. They may thus form either in the subsurface or under select conditions at the surface. However, Al clay minerals, discovered in multiple locations on Mars (Arabia Terra, Northeast Syrtis, Libya Montes Terra Sirenum, Eridania, circum-Hellas, Valles Marineris) may provide evidence of substantial water throughput, if their protolith materials were basaltic. This is because formation of Al clays from a mafic protolith requires removal of Mg and either formation of accompanying Fe oxides or removal of Fe. Thus, the observed sequences of Al clays atop Fe/Mg clays were proposed to represent open system weathering and possibly a late climate optimum around the late Noachian/early Hesperian [1]. Later, they were comprehensively cataloged and reported to represent "weathering sequences" similar to those in terrestrial tropical environments [2]. However, key questions remain; in particular, how much water throughput over what time scale is required? The answer to this question has substantial bearing on the climate of early Mars. Recently, we employed a newly developed, non-parametric Bayesian algorithm [3,4] for semi-automatic identification of rare spectral classes on 139 CRISM images in areas with reported regional-scale occurrences of Al clays. Dozens of detections of the minerals alunite and jarosite were made with the algorithm and then verified by manual analysis. These sulfate hydroxides form only at low pHs, and thus their presence tightly constrains water chemistry. Here, we discuss the evidence for low pH surface waters associated with the weathering sequences and their implications for the cumulative duration of surface weathering. [1] Ehlmann et al., 2011, Nature | [2] Carter et al., 2015, Icarus | [3] Dundar et al., 2016, IEEE WHISPERS proceedings | [4] Ehlmann & Dundar, submitted

Trends and future challenges in sampling the deep terrestrial biosphere.

PubMed

Wilkins, Michael J; Daly, Rebecca A; Mouser, Paula J; Trexler, Ryan; Sharma, Shihka; Cole, David R; Wrighton, Kelly C; Biddle, Jennifer F; Denis, Elizabeth H; Fredrickson, Jim K; Kieft, Thomas L; Onstott, Tullis C; Peterson, Lee; Pfiffner, Susan M; Phelps, Tommy J; Schrenk, Matthew O

2014-01-01

Research in the deep terrestrial biosphere is driven by interest in novel biodiversity and metabolisms, biogeochemical cycling, and the impact of human activities on this ecosystem. As this interest continues to grow, it is important to ensure that when subsurface investigations are proposed, materials recovered from the subsurface are sampled and preserved in an appropriate manner to limit contamination and ensure preservation of accurate microbial, geochemical, and mineralogical signatures. On February 20th, 2014, a workshop on "Trends and Future Challenges in Sampling The Deep Subsurface" was coordinated in Columbus, Ohio by The Ohio State University and West Virginia University faculty, and sponsored by The Ohio State University and the Sloan Foundation's Deep Carbon Observatory. The workshop aims were to identify and develop best practices for the collection, preservation, and analysis of terrestrial deep rock samples. This document summarizes the information shared during this workshop.

Effect of bacteria and dissolved organics on mineral dissolution kinetics:

NASA Astrophysics Data System (ADS)

Pokrovsky, Oleg; Shirokova, Liudmila; Benezeth, Pascale; Zabelina, Svetlana

2010-05-01

Quantification of the effect of microorganisms and associated organic ligands on mineral dissolution rate is one among the last remaining challenges in modeling of water-rock interactions under earth surface and subsurface environments. This is especially true for deep underground settings within the context of CO2 capture, sequestration and storage. First, elevated CO2 pressures create numerous experimental difficulties for performing robust flow-through experiments at a given saturation state. Second, reactivity of main rock-forming minerals in abiotic systems at pCO2 >> 1 atm and circumneutral pH is still poorly constrained. And third, most of microbial habitats of the subsurface biosphere are not suitable for routine culturing in the laboratory, many of them are anaerobic and even strictly anaerobic, and many bacteria and archae cultures can live only in the consortium of microorganisms which is very hard to maintain at a controlled and stable biomass concentration. For experimental modeling of bio-mineral interactions in the laboratory, two other main conceptual challenges exist. Typical concentration of dissolved organic carbon that serves as a main nutrient for heterotrophic bacteria in underground waters rarely exceeds 3-5 mg/L. Typical concentration of DOC in nutrient media used for bacteria culturing is between 100 and 10,000 mg/L. Therefore, performing mineral-bacteria interactions in the laboratory under environmentally-sound conditions requires significant dilution of the nutrient media or the use of flow-through reactors. Concerning the effect of organic ligands and bacterial excudates on rock-forming mineral dissolution, at the present time, mostly empirical (phenomenological) approach can be used. Indeed, the pioneering studies of Stumm and co-workers have established a firm basis for modeling the catalyzing and inhibiting effects of ligands on metal oxide dissolution rate. This approach, very efficient for studying the interaction of organic and inorganic ligands with trivalent metal oxides, is based on applying multiple spectroscopic techniques allowing to reveal the chemical structure of adsorbed complexes. However, due to i) low surface area of most rock-forming minerals (carbonates, non-clay silicates), ii) difficulties of applying surface spectroscopic techniques at elevated pressures, and iii) very complex nature of bacterial exometabolites, it is not possible at the present time, to use rigorous surface complexation approach for rationalizing ligand- and bacteria-affected mineral dissolution under sub-surface CO2 storage environment. In this work, we present examples of overcoming these difficulties via concerted study of olivine, wollastonite and calcite interaction with heterotrophic bacteria and methanogenic archaes.

Comparative Study of Effects of CO 2 Concentration and pH on Microbial Communities from a Saline Aquifer, a Depleted Oil Reservoir, and a Freshwater Aquifer

DOE PAGES

Gulliver, Djuna M.; Lowry, Gregory V.; Gregory, Kelvin B.

2016-08-09

Injected CO 2 from geologic carbon storage is expected to impact the microbial communities of proposed storage sites, such as depleted oil reservoirs and deep saline aquifers, as well as overlying freshwater aquifers at risk of receiving leaking CO 2. Microbial community change in these subsurface sites may affect injectivity of CO 2, permanence of stored CO 2, and shallow subsurface water quality. The effect of CO 2 concentration on the microbial communities in fluid collected from a depleted oil reservoir and a freshwater aquifer was examined at subsurface pressures and temperatures. The community was exposed to 0%, 1%, 10%,more » and 100% pCO 2 for 56 days. Bacterial community structure was analyzed through 16S rRNA gene clone libraries, and total bacterial abundance was estimated through quantitative polymerase chain reaction. Changes in the microbial community observed in the depleted oil reservoir samples and freshwater samples were compared to previous results from CO 2-exposed deep saline aquifer fluids. Overall, results suggest that CO 2 exposure to microbial communities will result in pH-dependent population change, and the CO 2-selected microbial communities will vary among sites. In conclusion, this is the first study to compare the response of multiple subsurface microbial communities at conditions expected during geologic carbon storage, increasing the understanding of environmental drivers for microbial community changes in CO 2-exposed environments.« less

Comparative Study of Effects of CO 2 Concentration and pH on Microbial Communities from a Saline Aquifer, a Depleted Oil Reservoir, and a Freshwater Aquifer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulliver, Djuna M.; Lowry, Gregory V.; Gregory, Kelvin B.

Injected CO 2 from geologic carbon storage is expected to impact the microbial communities of proposed storage sites, such as depleted oil reservoirs and deep saline aquifers, as well as overlying freshwater aquifers at risk of receiving leaking CO 2. Microbial community change in these subsurface sites may affect injectivity of CO 2, permanence of stored CO 2, and shallow subsurface water quality. The effect of CO 2 concentration on the microbial communities in fluid collected from a depleted oil reservoir and a freshwater aquifer was examined at subsurface pressures and temperatures. The community was exposed to 0%, 1%, 10%,more » and 100% pCO 2 for 56 days. Bacterial community structure was analyzed through 16S rRNA gene clone libraries, and total bacterial abundance was estimated through quantitative polymerase chain reaction. Changes in the microbial community observed in the depleted oil reservoir samples and freshwater samples were compared to previous results from CO 2-exposed deep saline aquifer fluids. Overall, results suggest that CO 2 exposure to microbial communities will result in pH-dependent population change, and the CO 2-selected microbial communities will vary among sites. In conclusion, this is the first study to compare the response of multiple subsurface microbial communities at conditions expected during geologic carbon storage, increasing the understanding of environmental drivers for microbial community changes in CO 2-exposed environments.« less

Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment

PubMed Central

Rajala, Pauliina; Bomberg, Malin

2017-01-01

Microbial communities in deep subsurface environments comprise a large portion of Earth’s biomass, but the microbial activity in these habitats is largely unknown. Here, we studied how microorganisms from two isolated groundwater fractures at 180 and 500 m depths of the Outokumpu Deep Drillhole (Finland) responded to methane or methanol amendment, in the presence or absence of sulfate as an additional electron acceptor. Methane is a plausible intermediate in the deep subsurface carbon cycle, and electron acceptors such as sulfate are critical components for oxidation processes. In fact, the majority of the available carbon in the Outokumpu deep biosphere is present as methane. Methanol is an intermediate of methane oxidation, but may also be produced through degradation of organic matter. The fracture fluid samples were incubated in vitro with methane or methanol in the presence or absence of sulfate as electron acceptor. The metabolic response of microbial communities was measured by staining the microbial cells with fluorescent redox sensitive dye combined with flow cytometry, and DNA or cDNA-derived amplicon sequencing. The microbial community of the fracture zone at the 180 m depth was originally considerably more respiratory active and 10-fold more numerous (105 cells ml-1 at 180 m depth and 104 cells ml-1 at 500 m depth) than the community of the fracture zone at the 500 m. However, the dormant microbial community at the 500 m depth rapidly reactivated their transcription and respiration systems in the presence of methane or methanol, whereas in the shallower fracture zone only a small sub-population was able to utilize the newly available carbon source. In addition, the composition of substrate activated microbial communities differed at both depths from original microbial communities. The results demonstrate that OTUs representing minor groups of the total microbial communities play an important role when microbial communities face changes in environmental conditions. PMID:28367144

Sorption of radioiodide in an acidic, nutrient-poor boreal bog: insights into the microbial impact.

PubMed

Lusa, M; Bomberg, M; Aromaa, H; Knuutinen, J; Lehto, J

2015-05-01

Batch sorption experiments were conducted to evaluate the sorption behaviour of iodide and the microbial impact on iodide sorption in the surface moss, subsurface peat, gyttja, and clay layers of a nutrient-poor boreal bog. The batch distribution coefficient (Kd) values of iodide decreased as a function of sampling depth. The highest Kd values, 4800 L/Kg dry weight (DW) (geometric mean), were observed in the fresh surface moss and the lowest in the bottom clay (geometric mean 90 mL/g DW). In the surface moss, peat and gyttja layers, which have a high organic matter content (on average 97%), maximum sorption was observed at a pH between ∼ 4 and 5 and in the clay layer at pH 2. The Kd values were significantly lower in sterilized samples, being 20-fold lower than the values found for the unsterilized samples. In addition, the recolonization of sterilized samples with a microbial population from the fresh samples restored the sorption capacity of surface moss, peat and gyttja samples, indicating that the decrease in the sorption was due to the destruction of microbes and supporting the hypothesis that microbes are necessary for the incorporation of iodide into the organic matter. Anoxic conditions reduced the sorption of iodide in fresh, untreated samples, similarly to the effect of sterilization, which supports the hypothesis that iodide is oxidized into I2/HIO before incorporation into the organic matter. Furthermore, the Kd values positively correlated with peroxidase activity in surface moss, subsurface peat and gyttja layers at +20 °C, and with the bacterial cell counts obtained from plate count agar at +4 °C. Our results demonstrate the importance of viable microbes for the sorption of iodide in the bog environment, having a high organic matter content and a low pH. Copyright © 2015 Elsevier Ltd. All rights reserved.

Effects of Temperature on Solute Transport Parameters in Differently-Textured Soils at Saturated Condition

NASA Astrophysics Data System (ADS)

Hamamoto, S.; Arihara, M.; Kawamoto, K.; Nishimura, T.; Komatsu, T.; Moldrup, P.

2014-12-01

Subsurface warming driven by global warming, urban heat islands, and increasing use of shallow geothermal heating and cooling systems such as the ground source heat pump, potentially causes changes in subsurface mass transport. Therefore, understanding temperature dependency of the solute transport characteristics is essential to accurately assess environmental risks due to increased subsurface temperature. In this study, one-dimensional solute transport experiments were conducted in soil columns under temperature control to investigate effects of temperature on solute transport parameters, such as solute dispersion and diffusion coefficients, hydraulic conductivity, and retardation factor. Toyoura sand, Kaolin clay, and intact loamy soils were used in the experiments. Intact loamy soils were taken during a deep well boring at the Arakawa Lowland in Saitama Prefecture, Japan. In the transport experiments, the core sample with 5-cm diameter and 4-cm height was first isotropically consolidated, whereafter 0.01M KCl solution was injected to the sample from the bottom. The concentrations of K+ and Cl- in the effluents were analyzed by an ion chromatograph to obtain solute breakthrough curves. The solute transport parameters were calculated from the breakthrough curves. The experiments were conducted under different temperature conditions (15, 25, and 40 oC). The retardation factor for the intact loamy soils decreased with increasing temperature, while water permeability increased due to reduced viscosity of water at higher temperature. Opposite, the effect of temperature on solute dispersivity for the intact loamy soils was insignificant. The effects of soil texture on the temperature dependency of the solute transport characteristics will be further investigated from comparison of results from differently-textured samples.

Consequences and mitigation of saltwater intrusion induced by short-circuiting during aquifer storage and recovery in a coastal subsurface

NASA Astrophysics Data System (ADS)

Gerardus Zuurbier, Koen; Stuyfzand, Pieter Jan

2017-02-01

Coastal aquifers and the deeper subsurface are increasingly exploited. The accompanying perforation of the subsurface for those purposes has increased the risk of short-circuiting of originally separated aquifers. This study shows how this short-circuiting negatively impacts the freshwater recovery efficiency (RE) during aquifer storage and recovery (ASR) in coastal aquifers. ASR was applied in a shallow saltwater aquifer overlying a deeper, confined saltwater aquifer, which was targeted for seasonal aquifer thermal energy storage (ATES). Although both aquifers were considered properly separated (i.e., a continuous clay layer prevented rapid groundwater flow between both aquifers), intrusion of deeper saltwater into the shallower aquifer quickly terminated the freshwater recovery. The presumable pathway was a nearby ATES borehole. This finding was supported by field measurements, hydrochemical analyses, and variable-density solute transport modeling (SEAWAT version 4; Langevin et al., 2007). The potentially rapid short-circuiting during storage and recovery can reduce the RE of ASR to null. When limited mixing with ambient groundwater is allowed, a linear RE decrease by short-circuiting with increasing distance from the ASR well within the radius of the injected ASR bubble was observed. Interception of deep short-circuiting water can mitigate the observed RE decrease, although complete compensation of the RE decrease will generally be unattainable. Brackish water upconing from the underlying aquitard towards the shallow recovery wells of the ASR system with multiple partially penetrating wells (MPPW-ASR) was observed. This leakage may lead to a lower recovery efficiency than based on current ASR performance estimations.

Approaching Mars-like geochemical conditions in the laboratory: omission of artificial buffers and reductants in a study of biogenic methane production on a smectite clay.

PubMed

Chastain, Brendon K; Kral, Timothy A

2010-11-01

Methanogens have not been shown to metabolize in conditions exactly analogous to those present in Mars' subsurface. In typical studies of methanogenic metabolism, nutrient-rich buffered media and reducing agents are added to the cultures in an attempt to optimize the environment for methanogen survival and growth. To study methanogens in more Mars-relevant laboratory conditions, efforts should be made to eliminate artificial media, buffers, and reducing agents from investigations of methanogenic metabolism. After preliminary work to compare methanogen viability on montmorillonite clay and JSC Mars-1 regolith simulant, a study was conducted to determine whether biological methanogenesis could occur in non-reduced, non-buffered environments containing only H(2), CO(2), montmorillonite, and the liquid fraction extracted from a montmorillonite/deionized water suspension. Biogenic methane was observed in the microenvironments despite the omission of traditional media, buffers, and reducing agents. Mean headspace methane concentration after 96 days of observation was 10.23% ± 0.64% (% vol ± SEM, n = 4). However, methane production was severely decreased with respect to reduced, buffered microenvironments (Day 28: 31.98% ± 0.19%, n = 3). Analysis of results and comparison to previous work indicate that montmorillonite clay has a strong ability to supply micronutrients necessary for methanogenic metabolism, and the liquid fraction from a montmorillonite/deionized water slurry can successfully be used as an alternative to reduced and buffered nutritive media in Mars-relevant studies of methanogenic metabolism.

Results of the application of seismic-reflection and electromagnetic techniques for near-surface hydrogeologic and environmental investigations at Fort Bragg, North Carolina

USGS Publications Warehouse

Meyer, M.T.; Fine, J.M.

1997-01-01

As part of the U.S. Geological Survey's Resource Conservation and Recovery Act, Facilities Investigations at Fort Bragg, North Carolina, selected geophysical techniques were evaluated for their usefulness as assessment tools for determining subsurface geology, delineating the areal extent of potentially contaminated landfill sites, and locating buried objects and debris of potential environmental concern. Two shallow seismic-reflection techniques (compression and shear wave) and two electromagnetic techniques (ground-penetrating radar and terrain conductivity) were evaluated at several sites at the U.S. Army Base. The electromagnetic techniques also were tested for tolerance to cultural noise, such as nearby fences, vehicles, and power lines. For the terrain conductivity tests, two instruments were used--the EM31 and EM34, which have variable depths of exploration. The shallowest reflection event was 70 feet below land surface observed in common-depth point, stacked compression-wave data from 24- and 12-fold shallow-seismic-reflection surveys. Several reflection events consistent with clay-sand interfaces between 70 and 120 feet below land surface, along with basement-saprolite surfaces, were imaged in the 24-fold, common- depth-point stacked data. 12-fold, common-depth-point stacked data set contained considerably more noise than the 24-fold, common-depth-point data, due to reduced shot-to-receiver redundancy. Coherent stacked reflection events were not observed in the 24-fold, common-depth-point stacked shear-wave data because of the partial decoupling of the shear- wave generator from the ground. At one site, ground-penetrating radar effectively delineated a shallow, 2- to 5-foot thick sand unit bounded by thin (less than 1 foot) clay layers. The radar signal was completely attenuated where the overlying and underlying clay units thickened and the sand unit thinned. The pene- tration depth of the radar signal was less than 10 feet below land surface. A slight increase in electromagnetic conductivity across shallow sampling EM31 and EM34 profiles provided corroborative evidence of the shallow, thickening clay units. Plots of raw EM31 and EM34 data provided no direct interpretable information to delineate sand and clay units in the shallow subsurface. At two sites, the ground-penetrating radar effectively delineated the lateral continuity of surficial sand units 5 to 25 feet in thickness and the tops of their underlying clay units. The effective exploration depth of the ground-penetrating radar was limited by the proximity of clay units to the subsurface and their thickness. The ground-penetrating radar delineated the areal extent and depth of cover at a previously unrecognized extension of a trench-like landfill underlying a vehicle salvage yard. Attenuation of the radar signal beneath the landfill cover and the adjacent subsurface clays made these two mediums indistinguishable by ground-penetrating radar; however, EM31 data indicated that the electrical conductivity of the landfill was higher than the subsurface material adjacent to the landfill. The EM31 and EM34 conductivity surveys defined the areal extent of a landfill whose boundaries were inaccurately mapped, and also identified the locations of an old dumpsite and waste incinerator site at another landfill. A follow-up ground-penetrating radar survey of the abandoned dumpsite showed incongruities in some of the shallow radar reflections interpreted as buried refuse dispersed throughout the landfill. The ground-penetrating radar and EM31 effectively delineated a shallow buried fuel-oil tank. Of the three electromagnetic instruments, the ground-penetrating radar with the shielded 100-megahertz antenna was the least affected by cultural noise followed, in order, by the EM31 and EM34. The combination of terrain- conductivity and ground-penetrating radar for the site assessment of the landfill provided a powerful means to identify the areal extent of the landfill, potenti

Biofilm formation and potential for iron cycling in serpentinization-influenced groundwater of the Zambales and Coast Range ophiolites.

PubMed

Meyer-Dombard, D'Arcy R; Casar, Caitlin P; Simon, Alexander G; Cardace, Dawn; Schrenk, Matthew O; Arcilla, Carlo A

2018-05-01

Terrestrial serpentinizing systems harbor microbial subsurface life. Passive or active microbially mediated iron transformations at alkaline conditions in deep biosphere serpentinizing ecosystems are understudied. We explore these processes in the Zambales (Philippines) and Coast Range (CA, USA) ophiolites, and associated surface ecosystems by probing the relevance of samples acquired at the surface to in situ, subsurface ecosystems, and the nature of microbe-mineral associations in the subsurface. In this pilot study, we use microcosm experiments and batch culturing directed at iron redox transformations to confirm thermodynamically based predictions that iron transformations may be important in subsurface serpentinizing ecosystems. Biofilms formed on rock cores from the Zambales ophiolite on surface and in-pit associations, confirming that organisms from serpentinizing systems can form biofilms in subsurface environments. Analysis by XPS and FTIR confirmed that enrichment culturing utilizing ferric iron growth substrates produced reduced, magnetic solids containing siderite, spinels, and FeO minerals. Microcosms and enrichment cultures supported organisms whose near relatives participate in iron redox transformations. Further, a potential 'principal' microbial community common to solid samples in serpentinizing systems was identified. These results indicate collectively that iron redox transformations should be more thoroughly and universally considered when assessing the function of terrestrial subsurface ecosystems driven by serpentinization.

Clean subglacial access: prospects for future deep hot-water drilling

PubMed Central

Pearce, David; Hodgson, Dominic A.; Smith, Andrew M.; Rose, Mike; Ross, Neil; Mowlem, Matt; Parnell, John

2016-01-01

Accessing and sampling subglacial environments deep beneath the Antarctic Ice Sheet presents several challenges to existing drilling technologies. With over half of the ice sheet believed to be resting on a wet bed, drilling down to this environment must conform to international agreements on environmental stewardship and protection, making clean hot-water drilling the most viable option. Such a drill, and its water recovery system, must be capable of accessing significantly greater ice depths than previous hot-water drills, and remain fully operational after connecting with the basal hydrological system. The Subglacial Lake Ellsworth (SLE) project developed a comprehensive plan for deep (greater than 3000 m) subglacial lake research, involving the design and development of a clean deep-ice hot-water drill. However, during fieldwork in December 2012 drilling was halted after a succession of equipment issues culminated in a failure to link with a subsurface cavity and abandonment of the access holes. The lessons learned from this experience are presented here. Combining knowledge gained from these lessons with experience from other hot-water drilling programmes, and recent field testing, we describe the most viable technical options and operational procedures for future clean entry into SLE and other deep subglacial access targets. PMID:26667913

Tipping Point for Expansion of Layered Aluminosilicates in Weakly Polar Solvents: Supercritical CO 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schaef, Herbert T.; Loganathan, Narasimhan; Bowers, Geoffrey M.

Layered aluminosilicates play a dominant role in the mechanical and gas storage properties of the subsurface, are used in diverse industrial applications, and serve as model materials for understanding solvent-ion-support systems. Although expansion in the presence of H2O is well known to be systematically correlated with the hydration free energy of the interlayer cation, in environments dominated by non-polar solvents (i.e. CO2), uptake into the interlayer is not well-understood. Using novel high pressure capabilities, we investigated the interaction of super-critical CO2 with Na+-, NH4+-, and Cs+-saturated montmorillonite, comparing results with predictions from molecular dynamics simulations. Despite the known trend inmore » H2O, and that cation solvation energies in CO2 suggest a stronger interaction with Na+, both the NH4+- and Cs+-clays readily absorbed CO2 and expanded while the Na+-clay did not. The apparent inertness of the Na+-clay was not due to kinetics, as experiments seeking a stable expanded state showed that none exists. Molecular dynamics simulations revealed a large endothermicity to CO2 intercalation in the Na+-clay, but little or no energy barrier for the NH4+- and Cs+-clays. Consequently, we have shown for the first time that in the presence of a low dielectric constant gas swelling depends more on the strength of the interaction between interlayer cation and aluminosilicate sheets and less on that with solvent. The finding suggests a distinct regime in layered aluminosilicates swelling behavior triggered by low solvent polarizability, with important implications in geomechanics, storage and retention of volatile gases, and across industrial uses in gelling, decoloring, heterogeneous catalysis, and semi-permeable reactive barriers.« less

A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust

PubMed Central

Magnabosco, Cara; Ryan, Kathleen; Lau, Maggie C Y; Kuloyo, Olukayode; Sherwood Lollar, Barbara; Kieft, Thomas L; van Heerden, Esta; Onstott, Tullis C

2016-01-01

Subsurface microbial communities comprise a significant fraction of the global prokaryotic biomass; however, the carbon metabolisms that support the deep biosphere have been relatively unexplored. In order to determine the predominant carbon metabolisms within a 3-km deep fracture fluid system accessed via the Tau Tona gold mine (Witwatersrand Basin, South Africa), metagenomic and thermodynamic analyses were combined. Within our system of study, the energy-conserving reductive acetyl-CoA (Wood-Ljungdahl) pathway was found to be the most abundant carbon fixation pathway identified in the metagenome. Carbon monoxide dehydrogenase genes that have the potential to participate in (1) both autotrophic and heterotrophic metabolisms through the reversible oxidization of CO and subsequent transfer of electrons for sulfate reduction, (2) direct utilization of H2 and (3) methanogenesis were identified. The most abundant members of the metagenome belonged to Euryarchaeota (22%) and Firmicutes (57%)—by far, the highest relative abundance of Euryarchaeota yet reported from deep fracture fluids in South Africa and one of only five Firmicutes-dominated deep fracture fluids identified in the region. Importantly, by combining the metagenomics data and thermodynamic modeling of this study with previously published isotopic and community composition data from the South African subsurface, we are able to demonstrate that Firmicutes-dominated communities are associated with a particular hydrogeologic environment, specifically the older, more saline and more reducing waters. PMID:26325359

Terrestrial Subsurface Ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilkins, Michael J.; Fredrickson, Jim K.

2015-10-15

The Earth’s crust is a solid cool layer that overlays the mantle, with a varying thickness of between 30-50 km on continental plates, and 5-10 km on oceanic plates. Continental crust is composed of a variety of igneous, metamorphic, and sedimentary rocks that weather and re-form over geologic cycles lasting millions to billions of years. At the crust surface, these weathered minerals and organic material combine to produce a variety of soils types that provide suitable habitats and niches for abundant microbial diversity (see Chapter 4). Beneath this soil zone is the subsurface. Once thought to be relatively free ofmore » microorganisms, recent estimates have calculated that between 1016-1017 g C biomass (2-19% of Earth’s total biomass) may be present in this environment (Whitman et al., 1998;McMahon and Parnell, 2014). Microbial life in the subsurface exists across a wide range of habitats: in pores associated with relatively shallow unconsolidated aquifer sediments to fractures in bedrock formations that are more than a kilometer deep, where extreme lithostatic pressures and temperatures are encountered. While these different environments contain varying physical and chemical conditions, the absence of light is a constant. Despite this, diverse physiologies and metabolisms enable microorganisms to harness energy and carbon for growth in water-filled pore spaces and fractures. Carbon and other element cycles are driven by microbial activity, which has implications for both natural processes and human activities in the subsurface, e.g., bacteria play key roles in both hydrocarbon formation and degradation. Hydrocarbons are a major focus for human utilization of the subsurface, via oil and gas extraction and potential geologic CO2 sequestration. The subsurface is also utilized or being considered for sequestered storage of high-level radioactive waste from nuclear power generation and residual waste from past production of weapons grade nuclear materials. While our understanding of the subsurface is continually improving, it is clear that only a small fraction of microbial habitats have been sampled and studied. In this chapter, we will discuss these studies in the context of the distribution of microbial life in the subsurface, the stresses that microorganisms must overcome to survive in these environments, and the metabolic strategies that are employed to harness energy in a region of the planet far-removed from sunlight. Finally, we will consider both beneficial and deleterious effects of microbial activity in the subsurface on human activities in this environment.« less

Mineralizing Filamentous Bacteria from the Prony Bay Hydrothermal Field Give New Insights into the Functioning of Serpentinization-Based Subseafloor Ecosystems

PubMed Central

Pisapia, Céline; Gérard, Emmanuelle; Gérard, Martine; Lecourt, Léna; Lang, Susan Q.; Pelletier, Bernard; Payri, Claude E.; Monnin, Christophe; Guentas, Linda; Postec, Anne; Quéméneur, Marianne; Erauso, Gaël; Ménez, Bénédicte

2017-01-01

Despite their potential importance as analogs of primitive microbial metabolisms, the knowledge of the structure and functioning of the deep ecosystems associated with serpentinizing environments is hampered by the lack of accessibility to relevant systems. These hyperalkaline environments are depleted in dissolved inorganic carbon (DIC), making the carbon sources and assimilation pathways in the associated ecosystems highly enigmatic. The Prony Bay Hydrothermal Field (PHF) is an active serpentinization site where, similar to Lost City (Mid-Atlantic Ridge), high-pH fluids rich in H2 and CH4 are discharged from carbonate chimneys at the seafloor, but in a shallower lagoonal environment. This study aimed to characterize the subsurface microbial ecology of this environment by focusing on the earliest stages of chimney construction, dominated by the discharge of hydrothermal fluids of subseafloor origin. By jointly examining the mineralogy and the microbial diversity of the conduits of juvenile edifices at the micrometric scale, we find a central role of uncultivated bacteria belonging to the Firmicutes in the ecology of the PHF. These bacteria, along with members of the phyla Acetothermia and Omnitrophica, are identified as the first chimneys inhabitants before archaeal Methanosarcinales. They are involved in the construction and early consolidation of the carbonate structures via organomineralization processes. Their predominance in the most juvenile and nascent hydrothermal chimneys, and their affiliation with environmental subsurface microorganisms, indicate that they are likely discharged with hydrothermal fluids from the subseafloor. They may thus be representative of endolithic serpentinization-based ecosystems, in an environment where DIC is limited. In contrast, heterotrophic and fermentative microorganisms may consume organic compounds from the abiotic by-products of serpentinization processes and/or from life in the deeper subsurface. We thus propose that the Firmicutes identified at PHF may have a versatile metabolism with the capability to use diverse organic compounds from biological or abiotic origin. From that perspective, this study sheds new light on the structure of deep microbial communities living at the energetic edge in serpentinites and may provide an alternative model of the earliest metabolisms. PMID:28197130

Mineralizing Filamentous Bacteria from the Prony Bay Hydrothermal Field Give New Insights into the Functioning of Serpentinization-Based Subseafloor Ecosystems.

PubMed

Pisapia, Céline; Gérard, Emmanuelle; Gérard, Martine; Lecourt, Léna; Lang, Susan Q; Pelletier, Bernard; Payri, Claude E; Monnin, Christophe; Guentas, Linda; Postec, Anne; Quéméneur, Marianne; Erauso, Gaël; Ménez, Bénédicte

2017-01-01

Despite their potential importance as analogs of primitive microbial metabolisms, the knowledge of the structure and functioning of the deep ecosystems associated with serpentinizing environments is hampered by the lack of accessibility to relevant systems. These hyperalkaline environments are depleted in dissolved inorganic carbon (DIC), making the carbon sources and assimilation pathways in the associated ecosystems highly enigmatic. The Prony Bay Hydrothermal Field (PHF) is an active serpentinization site where, similar to Lost City (Mid-Atlantic Ridge), high-pH fluids rich in H 2 and CH 4 are discharged from carbonate chimneys at the seafloor, but in a shallower lagoonal environment. This study aimed to characterize the subsurface microbial ecology of this environment by focusing on the earliest stages of chimney construction, dominated by the discharge of hydrothermal fluids of subseafloor origin. By jointly examining the mineralogy and the microbial diversity of the conduits of juvenile edifices at the micrometric scale, we find a central role of uncultivated bacteria belonging to the Firmicutes in the ecology of the PHF. These bacteria, along with members of the phyla Acetothermia and Omnitrophica , are identified as the first chimneys inhabitants before archaeal Methanosarcinales . They are involved in the construction and early consolidation of the carbonate structures via organomineralization processes. Their predominance in the most juvenile and nascent hydrothermal chimneys, and their affiliation with environmental subsurface microorganisms, indicate that they are likely discharged with hydrothermal fluids from the subseafloor. They may thus be representative of endolithic serpentinization-based ecosystems, in an environment where DIC is limited. In contrast, heterotrophic and fermentative microorganisms may consume organic compounds from the abiotic by-products of serpentinization processes and/or from life in the deeper subsurface. We thus propose that the Firmicutes identified at PHF may have a versatile metabolism with the capability to use diverse organic compounds from biological or abiotic origin. From that perspective, this study sheds new light on the structure of deep microbial communities living at the energetic edge in serpentinites and may provide an alternative model of the earliest metabolisms.

ANME-2D Archaea Catalyze Methane Oxidation in Deep Subsurface Sediments Independent of Nitrate Reduction

NASA Astrophysics Data System (ADS)

Hernsdorf, A. W.; Amano, Y.; Suzuki, Y.; Ise, K.; Thomas, B. C.; Banfield, J. F.

2015-12-01

Terrestrial sediments are an important global reservoir for methane. Microorganisms in the deep subsurface play a critical role in the methane cycle, yet much remains to be learned about their diversity and metabolisms. To provide more comprehensive insight into the microbiology of the methane cycle in the deep subsurface, we conducted a genome-resolved study of samples collected from the Horonobe Underground Research Laboratory (HURL), Japan. Groundwater samples were obtained from three boreholes from a depth range of between 140 m and 250 m in two consecutive years. Groundwater was filtered and metagenomic DNA extracted and sequenced, and the sequence data assembled. Based on the sequences of phylogenetically informative genes on the assembled fragments, we detected a high degree of overlap in community composition across a vertical transect within one borehole at the two sampling times. However, there was comparatively little similarity observed among communities across boreholes. Spatial and temporal abundance patterns were used in combination with tetranucleotide signatures of assembled genome fragments to bin the data and reconstruct over 200 unique draft genomes, of which 137 are considered to be of high quality (>90% complete). The deepest samples from one borehole were highly dominated by an archaeon identified as ANME-2D; this organism was also present at lower abundance in all other samples from that borehole. Also abundant in these microbial communities were novel members of the Gammaproteobacteria, Saccharibacteria (TM7) and Tenericute phyla. Notably, a ~2 Mbp draft genome for the ANME-2D archaeon was reconstructed. As expected, the genome encodes all of the genes predicted to be involved in the reverse methanogenesis pathway. In contrast with the previously reported ANME2-D genome, the HURL ANME-2D genome lacks the capacity to reduce nitrate. However, we identified many multiheme cytochromes with closest similarity to those of the known Fe-reducing/oxidizing archaeon Ferroglobus placidus. Thus, we suggest that ANME2-D may couple methane oxidation to reduction of ferric iron minerals in the sediment and may be generally important as a link between the iron and methane cycles in deep subsurface environments. Such information has important implications for modeling the global carbon cycle.

Aerial Vehicles to Detect Maximum Volume of Plume Material Associated with Habitable Areas in Extreme Environments

NASA Technical Reports Server (NTRS)

Gunasekara, Onalli; Wong, Uland Y.; Furlong, Michael P.; Dille, Michael

2017-01-01

Current technologies of exploring habitable areas of icy moons are limited to flybys of space probes. This research project addresses long-term navigation of icy moons by developing a MATLAB adjustable trajectory based on the volume of plume material observed. Plumes expose materials from the sub-surface without accessing the subsurface. Aerial vehicles capable of scouting vapor plumes and detecting maximum plume material volumes, which are considered potentially habitable in inhospitable environments, would enable future deep-space missions to search for extraterrestrial organisms on the surface of icy moons. Although this platform is still a prototype, it demonstrates the potential aerial vehicles can have in improving the capabilities of long-term space navigation and enabling technology for detecting life in extreme environments. Additionally, this work is developing the capabilities that could be utilized as a platform for space biology research. For example, aerial vehicles that are sent to map extreme environments of icy moons or the planet Mars, could also carry small payloads with automated cell-biology experiments, designed to probe the biological response of low-gravity and high-radiation planetary environments, serving as a pathfinder for future human missions.

Relation between Soil Order and Sorptive Capacity for Dissolved Organic Carbon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heal, Katherine R; Brandt, Craig C; Mayes, Melanie

2012-01-01

Soils have historically been considered a temporary sink for organic C, but deeper soils may serve as longer term C sinks due to the sorption of dissolved organic C (DOC) onto Fe- and clay-rich mineral soil particles. This project provides an improved understanding and predictive capability of the physical and chemical properties of deep soils that control their sorptive capacities for DOC. Two hundred thirteen subsurface soil samples (72 series from five orders) were selected from the eastern and central United States. A characterized natural DOC source was added to the soils, and the Langmuir sorption equation was fitted tomore » the observed data by adjusting the maximum DOC sorption capacity (Q{sub max}) and the binding coefficient (k). Different isotherm shapes were observed for Ultisols, Alfisols, and Mollisols due to statistically significant differences in the magnitude of k, while Q{sub max} was statistically invariant among these three orders. Linear regressions were performed on the entire database and as a function of soil order to correlate Langmuir fitted parameters with measured soil properties, e.g., pH, clay content, total organic C (TOC), and total Fe oxide content. Together, textural clay and Fe oxide content accounted for 35% of the variation in Q{sub max} in the database, and clay was most important for Alfisols and Ultisols. The TOC content, however, accounted for 27% of the variation in Q{sub max} in Mollisols. Soil pH accounted for 45% of the variation in k for the entire database, 41% for Mollisols, and 22% for Alfisols. Our findings demonstrate that correlations between Langmuir parameters and soil properties are different for different soil orders and that k is a more sensitive parameter for DOC sorption than is Q{sub max} for temperate soils from the central and eastern United States.« less

Colloid-Mediated Transport of Pharmaceutical and Personal Care Products through Porous Media

NASA Astrophysics Data System (ADS)

Xing, Yingna; Chen, Xijuan; Chen, Xin; Zhuang, Jie

2016-10-01

Pharmaceutical and personal care products (PPCPs) enter soils through reclaimed water irrigation and biosolid land applications. Colloids, such as clays, that are present in soil may interact with PPCPs and thus affect their fate and transport in the subsurface environment. This study addresses the influence of soil colloids on the sorption and transport behaviors of PPCPs through laboratory column experiments. Results show that the affinities of PPCPs for colloids vary with their molecular chemistry and solution ionic strength. The presence of colloids promotes the breakthrough of ciprofloxacin (over 90% sorbed on colloids) from ~4% to 30-40%, and the colloid-facilitated effect was larger at lower ionic strength (e.g., 2 mM). In comparison, the net effect of colloids on the transport of tetracycline (~50% sorbed on colloids) could be facilitation or inhibition, depending on solution chemistry. This dual effect of colloids is primarily due to the opposite response of migration of dissolved and colloid-bound tetracycline to the change in solution ionic strength. Colloids could also facilitate the transport of ibuprofen (~10% sorbed on colloids) by ~50% due likely to exclusion of dispersion pathways by colloid straining. This study suggests that colloids are significant carriers or transport promoters of some PPCPs in the subsurface environment and could affect their off-site environmental risks.

Colloid-Mediated Transport of PPCPs through Porous Media

NASA Astrophysics Data System (ADS)

Chen, Xijuan; Xing, Yingna; Chen, Xin; Zhuang, Jie

2017-04-01

Pharmaceutical and personal care products (PPCPs) enter the soil through reclaimed water irrigation and biosolid land application. Colloids, such as clays that are present in soil, may interact with PPCPs to affect their fate and transport in the subsurface environment. This study addresses how soil colloids mediate the sorption and transport behaviors of PPCPs through laboratory column experiments. The affinities of PPCPs for colloids as well as the influence factors were investigated. For PPCPs that have high sorption (e.g., ciprofloxacin with Kd ˜104-5 L/kg) on soil colloids, the transport is dominantly controlled by colloids, with a higher extent of colloid-facilitated effect at lower ionic strength. For PPCPs that have intermediate sorption (e.g., tetracycline with Kd ˜103-4 L/kg) on soil colloids, the mobility of dissolved and colloid-bound PPCPs respond oppositely to the effect of changes in solution ionic strength, making the net effect of soil colloids on PPCP transport variable with soil solution chemistry. For PPCPs with low sorption (e.g., ibuprofen with Kd ˜102-3 L/kg) on soil colloids, other measures (such as pre-filtration) must be taken. This study suggested that colloids are significant carriers of PPCPs in the subsurface environment and could affect their off-site environmental risks.

Colloid-Mediated Transport of Pharmaceutical and Personal Care Products through Porous Media

PubMed Central

Xing, Yingna; Chen, Xijuan; Chen, Xin; Zhuang, Jie

2016-01-01

Pharmaceutical and personal care products (PPCPs) enter soils through reclaimed water irrigation and biosolid land applications. Colloids, such as clays, that are present in soil may interact with PPCPs and thus affect their fate and transport in the subsurface environment. This study addresses the influence of soil colloids on the sorption and transport behaviors of PPCPs through laboratory column experiments. Results show that the affinities of PPCPs for colloids vary with their molecular chemistry and solution ionic strength. The presence of colloids promotes the breakthrough of ciprofloxacin (over 90% sorbed on colloids) from ~4% to 30–40%, and the colloid-facilitated effect was larger at lower ionic strength (e.g., 2 mM). In comparison, the net effect of colloids on the transport of tetracycline (~50% sorbed on colloids) could be facilitation or inhibition, depending on solution chemistry. This dual effect of colloids is primarily due to the opposite response of migration of dissolved and colloid-bound tetracycline to the change in solution ionic strength. Colloids could also facilitate the transport of ibuprofen (~10% sorbed on colloids) by ~50% due likely to exclusion of dispersion pathways by colloid straining. This study suggests that colloids are significant carriers or transport promoters of some PPCPs in the subsurface environment and could affect their off-site environmental risks. PMID:27734948

Water-level altitudes 2012 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2011 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

USGS Publications Warehouse

Kasmarek, Mark C.; Johnson, Michaela R.; Ramage, Jason K.

2012-01-01

Compaction of subsurface sediments (mostly in the clay layers) composing the Chicot and Evangeline aquifers was recorded continuously at 13 borehole extensometers at 11 sites. For the period of record beginning in 1973 (or later) and ending in December 2011, cumulative compaction data collected from the 13 extensometers ranged from 0.102 ft at the Texas City–Moses Lake site to 3.621 ft at the Addicks site. The rate of compaction varies from site to site because of differences in groundwater withdrawals near each site and differences among sites in the clay-to-sand ratio in the subsurface sediments. Therefore, it is not possible to extrapolate or infer a rate of compaction for adjacent areas on the basis of the rate of compaction measured at a nearby extensometer.

Lower Cretaceous smarl turbidites of the Argo Abyssal Plain, Indian Ocean

USGS Publications Warehouse

Dumoulin, Julie A.; Stewart, Sondra K.; Kennett, Diana; Mazzullo, Elsa K.

1992-01-01

Sediments recovered during Ocean Drilling Program (ODP) Leg 123 from the Argo Abyssal Plain (AAP) consist largely of turbidites derived from the adjacent Australian continental margin. The oldest abundant turbidites are Valanginian-Aptian in age and have a mixed (smarl) composition; they contain subequal amounts of calcareous and siliceous biogenic components, as well as clay and lesser quartz. Most are thin-bedded, fine sand to mud-sized, and best described by Stow and Piper's model (1984) for fine-grained biogenic turbidites. Thicker (to 3 m), coarser-grained (medium-to-coarse sand-sized) turbidites fit Bouma's model (1962) for sandy turbidites; these generally are base-cut-out (BCDE, BDE) sequences, with B-division parallel lamination as the dominant structure. Parallel laminae most commonly concentrate quartz and/or calcispheres vs. lithic clasts or clay, but distinctive millimeter to centimeter-thick, radiolarian-rich laminae occur in both fine and coarse-grained Valanginian-Hauterivian turbidites.AAP turbidites were derived from relatively deep parts of the continental margin (outer shelf, slope, or rise) that lay below the photic zone, but above the calcite compensation depth (CCD). Biogenic components are largely pelagic (calcispheres, foraminifers, radiolarians, nannofossils); lesser benthic foraminifers are characteristic of deep-water (abyssal to bathyal) environments. Abundant nonbiogenic components are mostly clay and clay clasts; smectite is the dominant clay species, and indicates a volcanogenic provenance, most likely the Triassic-Jurassic volcanic suite exposed along the northern Exmouth Plateau.Lower Cretaceous smarl turbidites were generated during eustatic lowstands and may have reached the abyssal plain via Swan Canyon, a submarine canyon thought to have formed during the Late Jurassic. In contrast to younger AAP turbidites, however, Lower Cretaceous turbidites are relatively fine-grained and do not contain notably older reworked fossils. Early in its history, the northwest Australian margin provided mainly contemporaneous slope sediment to the AAP; marginal basins adjacent to the continent trapped most terrigenous detritus, and pronounced canyon incisement did not occur until Late Cretaceous and, especially, Cenozoic time.

Measuring microbial metabolism in atypical environments: Bentonite in used nuclear fuel storage.

PubMed

Stone, Wendy; Kroukamp, Otini; Moes, Ana; McKelvie, Jennifer; Korber, Darren R; Wolfaardt, Gideon M

2016-01-01

Genomics enjoys overwhelming popularity in the study of microbial ecology. However, extreme or atypical environments often limit the use of such well-established tools and consequently demand a novel approach. The bentonite clay matrix proposed for use in Deep Geological Repositories for the long-term storage of used nuclear fuel is one such challenging microbial habitat. Simple, accessible tools were developed for the study of microbial ecology and metabolic processes that occur within this habitat, since the understanding of the microbiota-niche interaction is fundamental to describing microbial impacts on engineered systems such as compacted bentonite barriers. Even when genomic tools are useful for the study of community composition, techniques to describe such microbial impacts and niche interactions should complement these. Tools optimised for assessing localised microbial activity within bentonite included: (a) the qualitative use of the resazurin-resorufin indicator system for redox localisation, (b) the use of a CaCl2 buffer for the localisation of pH, and (c) fluorometry for the localisation of precipitated sulphide. The use of the Carbon Dioxide Evolution Monitoring System was also validated for measuring microbial activity in desiccated and saturated bentonite. Finally, the buffering of highly-basic bentonite at neutral pH improved the success of isolation of microbial populations, but not DNA, from the bentonite matrix. Thus, accessible techniques were optimised for exploring microbial metabolism in the atypical environments of clay matrices and desiccated conditions. These tools have application to the applied field of used nuclear fuel management, as well as for examining the fundamental biogeochemical cycles active in sedimentary and deep geological environments. Copyright © 2015 Elsevier B.V. All rights reserved.

Lithium in sediments and brines--how, why and where to search

USGS Publications Warehouse

Vine, James D.

1975-01-01

The possibility of using lithium in batteries to power electric vehicles and as fuel for thermonuclear power has focused attention on the limited resources of lithium other than in pegmatite minerals. The Clayton Valley, Nev., subsurface lithium brine has been the major source of lithium carbonate since about 1967, but the life of this brine field is probably limited to several more decades at the present rate of production. Lithium is so highly soluble during weathering and in sedimentary environments that no lithium-rich sedimentary minerals other than clays have been identified to date. The known deposits of lithium, such as the clay mineral hectorite and the lithium-rich brines, occur in closed desert basins of the Southwest in association with nonmarine evaporites. However, the ultimate source for the lithium in these deposits may be from hydrothermal solutions. The search for previously unreported deposits of nonpegmatitic lithium should consider its probable association, not only with nonmarine evaporite minerals, but also with recent volcanic and tectonic activity, as well as with deposits of boron, beryllium, fluorine, manganese, and possibly phosphate.

New developments in measurements technology relevant to the studies of deep geological repositories in bedded salt

NASA Astrophysics Data System (ADS)

Mao, N. H.; Ramirez, A. L.

1980-10-01

Developments in measurement technology are presented which are relevant to the studies of deep geological repositories for nuclear waste disposal during all phases of development, i.e., site selection, site characterization, construction, operation, and decommission. Emphasis was placed on geophysics and geotechnics with special attention to those techniques applicable to bedded salt. The techniques are grouped into sections as follows: tectonic environment, state of stress, subsurface structures, fractures, stress changes, deformation, thermal properties, fluid transport properties, and other approaches. Several areas that merit further research and developments are identified. These areas are: in situ thermal measurement techniques, fracture detection and characterization, in situ stress measurements, and creep behavior. The available instrumentations should generally be improved to have better resolution and accuracy, enhanced instrument survivability, and reliability for extended time periods in a hostile environment.

New Bio-Indicators for Long Term Natural Attenuation of Monoaromatic Compounds in Deep Terrestrial Aquifers

PubMed Central

Aüllo, Thomas; Berlendis, Sabrina; Lascourrèges, Jean-François; Dessort, Daniel; Duclerc, Dominique; Saint-Laurent, Stéphanie; Schraauwers, Blandine; Mas, Johan; Patriarche, Delphine; Boesinger, Cécile; Magot, Michel; Ranchou-Peyruse, Anthony

2016-01-01

Deep subsurface aquifers despite difficult access, represent important water resources and, at the same time, are key locations for subsurface engineering activities for the oil and gas industries, geothermal energy, and CO2 or energy storage. Formation water originating from a 760 m-deep geological gas storage aquifer was sampled and microcosms were set up to test the biodegradation potential of BTEX by indigenous microorganisms. The microbial community diversity was studied using molecular approaches based on 16S rRNA genes. After a long incubation period, with several subcultures, a sulfate-reducing consortium composed of only two Desulfotomaculum populations was observed able to degrade benzene, toluene, and ethylbenzene, extending the number of hydrocarbonoclastic–related species among the Desulfotomaculum genus. Furthermore, we were able to couple specific carbon and hydrogen isotopic fractionation during benzene removal and the results obtained by dual compound specific isotope analysis (𝜀C = -2.4‰ ± 0.3‰; 𝜀H = -57‰ ± 0.98‰; AKIEC: 1.0146 ± 0.0009, and AKIEH: 1.5184 ± 0.0283) were close to those obtained previously in sulfate-reducing conditions: this finding could confirm the existence of a common enzymatic reaction involving sulfate-reducers to activate benzene anaerobically. Although we cannot assign the role of each population of Desulfotomaculum in the mono-aromatic hydrocarbon degradation, this study suggests an important role of the genus Desulfotomaculum as potential biodegrader among indigenous populations in subsurface habitats. This community represents the simplest model of benzene-degrading anaerobes originating from the deepest subterranean settings ever described. As Desulfotomaculum species are often encountered in subsurface environments, this study provides some interesting results for assessing the natural response of these specific hydrologic systems in response to BTEX contamination during remediation projects. PMID:26904000

A New Sensitive GC-MS-based Method for Analysis of Dipicolinic Acid and Quantifying Bacterial Endospores in Deep Marine Subsurface Sediment

NASA Astrophysics Data System (ADS)

Fang, J.

2015-12-01

Marine sediments cover more than two-thirds of the Earth's surface and represent a major part of the deep biosphere. Microbial cells and microbial activity appear to be widespread in these sediments. Recently, we reported the isolation of gram-positive anaerobic spore-forming piezophilic bacteria and detection of bacterial endospores in marine subsurface sediment from the Shimokita coalbed, Japan. However, the modern molecular microbiological methods (e.g., DNA-based microbial detection techniques) cannot detect bacterial endospore, because endospores are impermeable and are not stained by fluorescence DNA dyes or by ribosomal RNA staining techniques such as catalysed reporter deposition fluorescence in situ hybridization. Thus, the total microbial cell abundance in the deep biosphere may has been globally underestimated. This emphasizes the need for a new cultivation independent approach for the quantification of bacterial endospores in the deep subsurface. Dipicolinic acid (DPA, pyridine-2,6-dicarboxylic acid) is a universal and specific component of bacterial endospores, representing 5-15wt% of the dry spore, and therefore is a useful indicator and quantifier of bacterial endospores and permits to estimate total spore numbers in the subsurface biosphere. We developed a sensitive analytical method to quantify DPA content in environmental samples using gas chromatography-mass spectrometry. The method is sensitive and more convenient in use than other traditional methods. We applied this method to analyzing sediment samples from the South China Sea (obtained from IODP Exp. 349) to determine the abundance of spore-forming bacteria in the deep marine subsurface sediment. Our results suggest that gram-positive, endospore-forming bacteria may be the "unseen majority" in the deep biosphere.

Sorption of Pseudomonas putida onto differently structured kaolinite minerals

NASA Astrophysics Data System (ADS)

Vasiliadou, I. A.; Papoulis, D.; Chrysikopoulos, C.; Panagiotaras, D.; Karakosta, E.; Fardis, M.; Papavassiliou, G.

2010-12-01

The presence of bio-colloids (e.g. bacteria and viruses) in the subsurface could be attributed to the release of particles from septic tanks, broken sewer lines or from artificial recharge with treated municipal wastewater. Bio-colloid transport in the subsurface is significantly affected by sorption onto the solid matrix. Bio-colloid attachment onto mobile or suspended in the aqueous phase soil particles (e.g. clay or other minerals) also may influence their fate and transport in the subsurface. The present study focuses on the investigation of Pseudomonas (Ps.) putida sorption onto well (KGa-1) and poorly (KGa-2) crystallized kaolinite minerals. Batch experiments were carried out to determine the sorption isotherms of Ps. putida onto both types of kaolinite particles. The sorption process of Ps. putida onto KGa-1 and KGa-2 is adequately described by a Langmuir isotherm. Attenuated Total Reflection Fourier Transform Infrared Spectroscopy as well as Nuclear Magnetic Resonance were employed to study the sorption mechanisms of Ps. putida. Experimental results indicated that KGa-2 presented higher affinity and sorption capacity than KGa-1. It was shown that electrostatic interactions and structural disorders can influence the sorption capacity of clay particles.

Tipping Point for Expansion of Layered Aluminosilicates in Weakly Polar Solvents: Supercritical CO2.

PubMed

Schaef, Herbert T; Loganathan, Narasimhan; Bowers, Geoffrey M; Kirkpatrick, R James; Yazaydin, A Ozgur; Burton, Sarah D; Hoyt, David W; Thanthiriwatte, K Sahan; Dixon, David A; McGrail, B Peter; Rosso, Kevin M; Ilton, Eugene S; Loring, John S

2017-10-25

Layered aluminosilicates play a dominant role in the mechanical and gas storage properties of the subsurface, are used in diverse industrial applications, and serve as model materials for understanding solvent-ion-support systems. Although expansion in the presence of H 2 O is well-known to be systematically correlated with the hydration free energy of the interlayer cation, particularly in environments dominated by nonpolar solvents (i.e., CO 2 ), uptake into the interlayer is not well-understood. Using novel high-pressure capabilities, we investigated the interaction of dry supercritical CO 2 with Na-, NH 4 -, and Cs-saturated montmorillonite, comparing results with predictions from molecular dynamics simulations. Despite the known trend in H 2 O and that cation solvation energies in CO 2 suggest a stronger interaction with Na, both the NH 4 - and Cs-clays readily absorbed CO 2 and expanded, while the Na-clay did not. The apparent inertness of the Na-clay was not due to kinetics, as experiments seeking a stable expanded state showed that none exists. Molecular dynamics simulations revealed a large endothermicity to CO 2 intercalation in the Na-clay but little or no energy barrier for the NH 4 - and Cs-clays. Indeed, the combination of experiment and theory clearly demonstrate that CO 2 intercalation of Na-montmorillonite clays is prohibited in the absence of H 2 O. Consequently, we have shown for the first time that in the presence of a low dielectric constant, gas swelling depends more on the strength of the interaction between the interlayer cation and aluminosilicate sheets and less on that with solvent. The finding suggests a distinct regime in layered aluminosilicate swelling behavior triggered by low solvent polarizability, with important implications in geomechanics, storage, and retention of volatile gases, and across industrial uses in gelling, decoloring, heterogeneous catalysis, and semipermeable reactive barriers.

Characterizing Microbial Diversity and Function in Natural Subsurface CO2 Reservoir Systems for Applied Use in Geologic Carbon Sequestration Environments

NASA Astrophysics Data System (ADS)

Freedman, A.; Thompson, J. R.

2013-12-01

The injection of CO2 into geological formations at quantities necessary to significantly reduce CO2 emissions will represent an environmental perturbation on a continental scale. The extent to which biological processes may play a role in the fate and transport of CO2 injected into geological formations has remained an open question due to the fact that at temperatures and pressures associated with reservoirs targeted for sequestration CO2 exists as a supercritical fluid (scCO2), which has generally been regarded as a sterilizing agent. Natural subsurface accumulations of CO2 serve as an excellent analogue for studying the long-term effects, implications and benefits of CO2 capture and storage (CCS). While several geologic formations bearing significant volumes of nearly pure scCO2 phases have been identified in the western United States, no study has attempted to characterize the microbial community present in these systems. Because the CO2 in the region is thought to have first accumulated millions of years ago, it is reasonable to assume that native microbial populations have undergone extensive and unique physiological and behavioral adaptations to adjust to the exceedingly high scCO2 content. Our study focuses on the microbial communities associated with the dolomite limestone McElmo Dome scCO2 Field in the Colorado Plateau region, approximately 1,000 m below the surface. Fluid samples were collected from 10 wells at an industrial CO2 production facility outside Cortez, CO. Subsamples preserved on site in 3.7% formaldehyde were treated in the lab with Syto 9 green-fluorescent nucleic acid stain, revealing 3.2E6 to 1.4E8 microbial cells per liter of produced fluid and 8.0E9 cells per liter of local pond water used in well drilling fluids. Extracted DNAs from sterivex 0.22 um filters containing 20 L of sample biomass were used as templates for PCR targeting the 16S rRNA gene. 16S rRNA amplicons from these samples were cloned, sequenced and subjected to microbial community analysis to test the hypothesis that a low but non-zero diversity that includes taxa from other subsurface environments will be present, reflecting the extreme ecological selective pressures of scCO2. A wide range of phylogenies have been identified, including genera that fall within the Proteobacteria, Bacilli, and Clostridial classes. Several species identified by 16S BLAST best hits are also known to inhabit deep subsurface environments, preliminarily confirming that a non-zero diversity has been able to survive, and possibly thrive, in the extreme scCO2-exposed deep subsurface environment at McElmo Dome. It thus appears that at least a subsection of native subsurface community biota may withstand the severe stresses associated with the injection of scCO2 for long-term geologic carbon sequestration efforts.

Heat as a groundwater tracer in shallow and deep heterogeneous media: Analytical solution, spreadsheet tool, and field applications

USGS Publications Warehouse

Kurylyk, Barret L.; Irvine, Dylan J.; Carey, Sean K.; Briggs, Martin A.; Werkema, Dale D.; Bonham, Mariah

2017-01-01

Groundwater flow advects heat, and thus, the deviation of subsurface temperatures from an expected conduction‐dominated regime can be analysed to estimate vertical water fluxes. A number of analytical approaches have been proposed for using heat as a groundwater tracer, and these have typically assumed a homogeneous medium. However, heterogeneous thermal properties are ubiquitous in subsurface environments, both at the scale of geologic strata and at finer scales in streambeds. Herein, we apply the analytical solution of Shan and Bodvarsson (2004), developed for estimating vertical water fluxes in layered systems, in 2 new environments distinct from previous vadose zone applications. The utility of the solution for studying groundwater‐surface water exchange is demonstrated using temperature data collected from an upwelling streambed with sediment layers, and a simple sensitivity analysis using these data indicates the solution is relatively robust. Also, a deeper temperature profile recorded in a borehole in South Australia is analysed to estimate deeper water fluxes. The analytical solution is able to match observed thermal gradients, including the change in slope at sediment interfaces. Results indicate that not accounting for layering can yield errors in the magnitude and even direction of the inferred Darcy fluxes. A simple automated spreadsheet tool (Flux‐LM) is presented to allow users to input temperature and layer data and solve the inverse problem to estimate groundwater flux rates from shallow (e.g., <1 m) or deep (e.g., up to 100 m) profiles. The solution is not transient, and thus, it should be cautiously applied where diel signals propagate or in deeper zones where multi‐decadal surface signals have disturbed subsurface thermal regimes.

Introduction of a Ground Penetrating Radar System for Subsurface Investigation in Balik Pulau, Penang Island

NASA Astrophysics Data System (ADS)

Teoh, YJ; Bruka, MA; Idris, NM; Ismail, NA; Muztaza, NM

2018-04-01

Ground penetrating radar (GPR) are non-invasive geophysical techniques that enhance studies of the shallow subsurface. The purposes of this work are to study the subsurface composition of Balik Pulau area in Penang Island and to identify shallow subsurface geology features. Data acquisition for GPR is by using 250 MHz antenna to cover 200m survey line at Jalan Tun Sardon, Balik Pulau. GPR survey was divided into ten sections at 20 m each. Results from GPR shows that there is low EM reflection along the first 40 m of the survey line. Intense EM reflections were recorded along the distance 40 m to 100 m. Less noticeable radar reflections recorded along 100 m to 200 m distance of the survey line. As a conclusion, clear signal of radar wave reflection indicates dry region of the subsurface. Meanwhile, low signal of radar wave reflection indicates highly weathered granitic soil or clay of the subsurface.

Inelastic neutron scattering and molecular simulation of the dynamics of interlayer water in smectite clay minerals

DOE PAGES

Cygan, Randall T.; Daemen, Luke L.; Ilgen, Anastasia G.; ...

2015-11-16

The study of mineral–water interfaces is of great importance to a variety of applications including oil and gas extraction, gas subsurface storage, environmental contaminant treatment, and nuclear waste repositories. Understanding the fundamentals of that interface is key to the success of those applications. Confinement of water in the interlayer of smectite clay minerals provides a unique environment to examine the interactions among water molecules, interlayer cations, and clay mineral surfaces. Smectite minerals are characterized by a relatively low layer charge that allows the clay to swell with increasing water content. Montmorillonite and beidellite varieties of smectite were investigated to comparemore » the impact of the location of layer charge on the interlayer structure and dynamics. Inelastic neutron scattering of hydrated and dehydrated cation-exchanged smectites was used to probe the dynamics of the interlayer water (200–900 cm –1 spectral region) and identify the shift in the librational edge as a function of the interlayer cation. Molecular dynamics simulations of equivalent phases and power spectra, derived from the resulting molecular trajectories, indicate a general shift in the librational behavior with interlayer cation that is generally consistent with the neutron scattering results for the monolayer hydrates. Both neutron scattering and power spectra exhibit librational structures affected by the location of layer charge and by the charge of the interlayer cation. Furthermore, divalent cations (Ba 2+ and Mg 2+) characterized by large hydration enthalpies typically exhibit multiple broad librational peaks compared to monovalent cations (Cs + and Na +), which have relatively small hydration enthalpies.« less

The role of soil processes in determining mechanisms of slope failure and hillslope development in a humid-tropical forest eastern Puerto Rico

USGS Publications Warehouse

Simon, A.; Larsen, M.C.; Hupp, C.R.

1990-01-01

Translational failures, with associated downslope earthflow components and shallow slides, appear to be the primary mechanism of hillslope denudation in the humid tropical forests of the mountains of eastern Puerto Rico. In-situ weathering of quartz diorite and marine-deposited volcaniclastics produces residual soil (saprolite; up to 21 m deep) / weathered rock profiles. Discontinuous zones of contrasting density and permeability particularly in quartz-diorite slopes at 0.5 m, and between 3 and 7 m, create both pathways and impedances for water that can result in excess pore pressures and, ultimately, aid in determining the location of failure planes and magnitudes of slope failures. In combination with relict fractures which create planes of weakness within the saprolite, and the potential significance of tensile stresses in the upper zone of saprolite (hypothesized to be caused by subsurface soil creep), shear failure can then occur during or after periods of heavy rainfall. Results of in-situ shear-strength testing show negative y-intercepts on the derived Mohr-Coulomb failure envelopes (approximately 50% of all tests) that are interpreted as apparent tensile stresses. Observation of tension cracks 1-2 m deep support the test data. Subsurface soil creep can cause extension of the soil and the development of tensile stresses along upper-slope segments. Shear-strength data support this hypothesis for both geologic types. Apparent values of maximum and mean tensile stress are greatest along upper slopes (16.5 and 6.29 kPa). Previously documented maximum rates of downslope movement coincided with local minima of shear strength, and the shear-strength minimum for all tests was located near 0.5 m below land surface, the shallow zone of contrasting permeabilities. These results indicate that subsurface soil creep, a slow semi-continuous process, may exert a profound influence on rapid, shallow slope failures in saprolitic soils. Data indicate that cove slopes in quartz diorite tend to be the most unstable when saturation levels reach 75%. Deep failures (7 m deep) appear the most critical but not the most frequent because pore pressure build-up will occur more rapidly in the upper perched zone of translocated clays before reaching the lower zone between 3 and 7 m. Frequent shallow failures could reduce the probability of deeper failures by removing overburden and reducing shear stress at depth. Deep failures are more likely to result from storm events of great duration and intensity. Sixty-six 'naturally occurring' and more than 100 'road-related' landslides were mapped. Forest elevations exceed 1000 m, but the majority of these failures were found between 600 and 800 m in elevation. This appears to be the area where there is sufficient concentration of subsurface water to result in excess pore pressures. The high percentage of slope failures in the 600-800-m range, relative to the percentage at higher elevations, suggests that differences in soil-water processes are responsible for the form of these mountain slopes. Steep linear segments are maintained at higher elevations. Slope angles are reduced in the 600-800-m range by frequent shallow slides, creating a largely concave surface. In combination, slope segments above 800 m, and those between 600 and 800 m, produce the characteristic form of the mountains of eastern Puerto Rico. ?? 1990.

Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.

PubMed

Wu, Xiaofen; Pedersen, Karsten; Edlund, Johanna; Eriksson, Lena; Åström, Mats; Andersson, Anders F; Bertilsson, Stefan; Dopson, Mark

2017-03-23

Deep terrestrial biosphere waters are separated from the light-driven surface by the time required to percolate to the subsurface. Despite biofilms being the dominant form of microbial life in many natural environments, they have received little attention in the oligotrophic and anaerobic waters found in deep bedrock fractures. This study is the first to use community DNA sequencing to describe biofilm formation under in situ conditions in the deep terrestrial biosphere. In this study, flow cells were attached to boreholes containing either "modern marine" or "old saline" waters of different origin and degree of isolation from the light-driven surface of the earth. Using 16S rRNA gene sequencing, we showed that planktonic and attached populations were dissimilar while gene frequencies in the metagenomes suggested that hydrogen-fed, carbon dioxide- and nitrogen-fixing populations were responsible for biofilm formation across the two aquifers. Metagenome analyses further suggested that only a subset of the populations were able to attach and produce an extracellular polysaccharide matrix. Initial biofilm formation is thus likely to be mediated by a few bacterial populations which were similar to Epsilonproteobacteria, Deltaproteobacteria, Betaproteobacteria, Verrucomicrobia, and unclassified bacteria. Populations potentially capable of attaching to a surface and to produce extracellular polysaccharide matrix for attachment were identified in the terrestrial deep biosphere. Our results suggest that the biofilm populations were taxonomically distinct from the planktonic community and were enriched in populations with a chemolithoautotrophic and diazotrophic metabolism coupling hydrogen oxidation to energy conservation under oligotrophic conditions.

Aqueous Geochemical Dynamics at the Coast Range Ophiolite Microbial Observatory and The Case for Subsurface Mixing of Regional Groundwaters

NASA Astrophysics Data System (ADS)

Cardace, D.; Schrenk, M. O.; McCollom, T. M.; Hoehler, T. M.

2017-12-01

Serpentinization is the aqueous alteration (or hydration) of olivine and pyroxene minerals in ultramafic rocks, occurring in the seabed and ultramafic units on continents, such as at the Coast Range Ophiolite (CRO) in northern California, USA. Mineral products of serpentinization include serpentine, magnetite, brucite, talc, oxyhydroxides, carbonates, and diverse clay minerals. Such mineral transformations generate extremely high pH solutions with characteristic cation and dissolved metal loads, transmitting CH4, H2, and CO gas mixtures from depth; deep life in ultramafic terrains is thought to be fueled by chemical energy derived from these geochemical reactions. The installation of 8 groundwater monitoring wells in the CRO has allowed frequent monitoring since 2011. Influx of deeply sourced, serpentinization-influenced waters is evidenced by related geochemical shifts (e.g., pH, oxidation-reduction potential), but is apparently mixing with other, regionally important groundwater types. Evaluation salinity loads in concert with other parameters, we model the mixing scenario of this site of ongoing scientific study and experimentation.

ADSORPTION OF BACTERIOPHAGES ON CLAY MINERALS

EPA Science Inventory

Theability to predict the fate of microorganisms in soil is dependent on an understanding of the process of their sorption on soil and subsurface materials. Presently, we have focused on studying the thermodynamics of sorption of bacteriophages (T-2, MS-2, and

Microbial habitability of Europa sustained by radioactive sources.

PubMed

Altair, Thiago; de Avellar, Marcio G B; Rodrigues, Fabio; Galante, Douglas

2018-01-10

There is an increasing interest in the icy moons of the Solar System due to their potential habitability and as targets for future exploratory missions, which include astrobiological goals. Several studies have reported new results describing the details of these moons' geological settings; however, there is still a lack of information regarding the deep subsurface environment of the moons. The purpose of this article is to evaluate the microbial habitability of Europa constrained by terrestrial analogue environments and sustained by radioactive energy provided by natural unstable isotopes. The geological scenarios are based on known deep environments on Earth, and the bacterial ecosystem is based on a sulfate-reducing bacterial ecosystem found 2.8 km below the surface in a basin in South Africa. The results show the possibility of maintaining the modeled ecosystem based on the proposed scenarios and provides directions for future models and exploration missions for a more complete evaluation of the habitability of Europa and of icy moons in general.

Single cell genomic study of dehalogenating Chloroflexi from deep sea sediments of Peruvian Margin

NASA Astrophysics Data System (ADS)

Spormann, A.; Kaster, A.; Meyer-Blackwell, K.; Biddle, J.

2012-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites (Dhc), are members of the rare biosphere of deep sea sediments but were originally discovered as the key microbes mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene to ethene. Dhc are slow growing, highly niche adapted microbes that are specialized to organohalide respiration as the sole mode of energy conservation. These strictly anaerobic microbes depend on a supporting microbial community to mitigate electron donor and cofactor requirements among other factors. Molecular and genomic studies on the key enzymes for energy conservation, reductive dehalogenases, have provided evidence for rapid adaptive evolution in terrestrial environments. However, the metabolic life style of Dhc in the absence of anthropogenic contaminants, such as in pristine deep sea sediments, is still unknown. In order to provide fundamental insights into life style, genomic population structure and evolution of Dhc, we analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site collected 6 mbf by a metagenomic and single cell genomic. We present for the first time single cell genomic data on dehalogenating Chloroflexi, a significant microbial population in the poorly understood oligotrophic marine sub-surface environments.

Single cell genomic study of dehalogenating Chloroflexi in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Biddle, J.; Spormann, A.

2012-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites (Dhc), are members of the rare biosphere of deep sea sediments but were originally discovered as the key microbes mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene to ethene. Dhc are slow growing, highly niche adapted microbes that are specialized to organohalide respiration as the sole mode of energy conservation. They are strictly anaerobic microbes that depend on a supporting microbial community for electron donor and cofactor requirements among other factors. Molecular and genomic studies on the key enzymes for energy conservation, reductive dehalogenases, have provided evidence for rapid adaptive evolution in terrestrial environments. However, the metabolic life style of Dhc in the absence of anthropogenic contaminants, such as in pristine deep sea sediments, is still unknown. In order to provide fundamental insights into life style, genomic population structure and evolution of Dhc, we analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site collected 6 mbsf by a metagenomic and single cell genomic approach. We present for the first time single cell genomic data on dehalogenating Chloroflexi, a significant microbial population in the poorly understood oligotrophic marine sub-surface environment.

Vertical distribution of three namatode species in relation to certain soil properties.

PubMed

Brodie, B B

1976-07-01

Population densities of Belonolaimus longicaudatus, Pratylenchus brachyurus, and Trichodorus christiei were determined from soil samples taken weekly in Tifton, Georgia during a 14-month period (except for April and May) at 15-cm increments to a depth of 105 cm. Belonolaimus longicaudatus predominately inhabited the top 30 cm of soil that was 87-88% sand, 6-7% silt, and 5-7% clay. No specimens were found below 60 cm where the soil was 76-79% sand, 5-6% silt, and 15-19% clay. Highest population densities occurred during June through September when temperature in the top 30 cm of soil was 22-25 C and soil moisture was from 9 to 20% by volume. Pratylenchus brachyurus was found at all depths, but population densities were greatest 45-75 cm deep where the soil was 78-79% sand, 6% silt, and 15-16% clay. In the months monitored, highest population densities occurred during March, June, and December when the soil temperature 45-75 cm deep was 14-17 C and soil moisture was 22-42%. Trichodorus christiei was found at all depths, but population densities were highest 30 cm deep where the soil was 83% sand, 5% silt, and 12% clay. Highest population densities occurred during December through March when the soil temperature 30 cm deep was 11-17 C and soil moisture was 18-23%.

Opportunities and challenges in studies of deep life (Invited)

NASA Astrophysics Data System (ADS)

Edwards, K. J.

2010-12-01

Over the past two decades, there has been an increasing awareness within the geological, microbiological, and oceanographic communities of the potentially vast microbial biosphere that is harbored beneath the surface of the Earth. With this awareness has come a mounting effort to study this potential biome - to better quantify biomass abundance, activity, and biogeochemical activity. In the Earth system, the largest deep subsurface biome is also the least accessible - the deep ocean subsurface biosphere. The oceanic deep biosphere also has greatest potential for influencing global scale biogeochemical processes -the carbon and energy cycles for example, and other elemental cycles. To address these topics and mount interdisciplinary efforts to study the deep subsurface marine biosphere, we have recently formed a center in support integrative, collaborative investigations. The national science foundation Center for Dark Biosphere Investigations (C-DEBI), has been initiated for the explicit purpose of resolving the extent, function, dynamics and implications of the subseafloor biosphere. This talk will discuss C-DEBI science, with focus on some of the opportunities and challenges in the study of deep life in the ocean, and the role that C-DEBI will play in meeting them

Impact-Induced Clay Mineral Formation and Distribution on Mars

NASA Technical Reports Server (NTRS)

Rivera-Valentin, E. G.; Craig, P. I.

2015-01-01

Clay minerals have been identified in the central peaks and ejecta blankets of impact craters on Mars. Several studies have suggested these clay minerals formed as a result of impact induced hydrothermalism either during Mars' Noachian era or more recently by the melting of subsurface ice. Examples of post-impact clay formation is found in several locations on Earth such as the Mjolnir and Woodleigh Impact Structures. Additionally, a recent study has suggested the clay minerals observed on Ceres are the result of impact-induced hydrothermal processes. Such processes may have occurred on Mars, possibly during the Noachian. Distinguishing between clay minerals formed preor post-impact can be accomplished by studying their IR spectra. In fact, showed that the IR spectra of clay minerals is greatly affected at longer wavelengths (i.e. mid-IR, 5-25 micron) by impact-induced shock deformation while the near-IR spectra (1.0-2.5 micron) remains relatively unchanged. This explains the discrepancy between NIR and MIR observations of clay minerals in martian impact craters noted. Thus, it allows us to determine whether a clay mineral formed from impact-induced hydrothermalism or were pre-existing and were altered by the impact. Here we study the role of impacts on the formation and distribution of clay minerals on Mars via a fully 3-D Monte Carlo cratering model, including impact- melt production using results from modern hydrocode simulations. We identify regions that are conducive to clay formation and the location of clay minerals post-bombardment.

Isolation and characterization of metal-reducing thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado.

PubMed

Roh, Yul; Liu, Shi V; Li, Guangshan; Huang, Heshu; Phelps, Tommy J; Zhou, Jizhong

2002-12-01

Five bacterial strains were isolated from anaerobic enrichment cultures that had originated from inoculations with samples collected from the deep subsurface environments of the millions-of-years-old, geologically and hydrologically isolated Piceance Basin in Colorado. Small-subunit rRNA gene-based analyses indicated that all of these bacteria were closely related to Thermoanaerobacter ethanolicus, with similarities of 99.4 to 99.5%. Three isolates (X513, X514, and X561) from the five bacterial strains were used to examine physiological characteristics. These thermophilic bacteria were able to use acetate, glucose, hydrogen, lactate, pyruvate, succinate, and xylose as electron donors while reducing Fe(III), cobalt(III), chromium(VI), manganese(IV), and uranium(VI) at 60 degrees C. One of the isolates (X514) was also able to utilize hydrogen as an electron donor for Fe(III) reduction. These bacteria exhibited diverse mineral precipitation capabilities, including the formation of magnetite (Fe(3)O(4)), siderite (FeCO(3)), rhodochrosite (MnCO(3)), and uraninite (UO(2)). The gas composition of the incubation headspace and the ionic composition of the incubation medium exerted profound influences on the types of minerals formed. The susceptibility of the thermophilic Fe(III)-reducing cultures to metabolic inhibitors specific for ferric reductase, hydrogenase, and electron transport indicated that iron reduction by these bacteria is an enzymatic process.

Modified montmorillonite clay microparticles for stable oil-in-seawater emulsions.

PubMed

Dong, Jiannan; Worthen, Andrew J; Foster, Lynn M; Chen, Yunshen; Cornell, Kevin A; Bryant, Steven L; Truskett, Thomas M; Bielawski, Christopher W; Johnston, Keith P

2014-07-23

Environmentally benign clay particles are of great interest for the stabilization of Pickering emulsions. Dodecane-in-synthetic seawater (SSW) emulsions formed with montmorillonite (MMT) clay microparticles modified with bis(2-hydroxyethyl)oleylamine were stable against coalescence, even at clay concentrations down to 0.1% w/v. Remarkably, as little as 0.001% w/v surfactant lowered the hydrophilicity of the clay to a sufficient level for stabilization of oil-in-SSW emulsions. The favorable effect of SSW on droplet size reduction and emulsion stability enhancement is hypothesized to be due to reduced electrostatic repulsion between adsorbed clay particles and a consequent increase in the continuous phase (an aqueous clay suspension) viscosity. Water/oil (W/O) emulsions were inverted to O/W either by decreasing the mass ratio of surfactant-to-clay (transitional inversion) or by increasing the water volume fraction (catastrophic inversion). For both types of emulsions, coalescence was minimal and the sedimentation or creaming was highly correlated with the droplet size. For catastrophic inversions, the droplet size of the emulsions was smaller in the case of the preferred curvature. Suspensions of concentrated clay in oil dispersions in the presence of surfactant were stable against settling. The mass transfer pathways during emulsification of oil containing the clay particles were analyzed on the droplet size/stability phase diagrams to provide insight for the design of dispersant systems for remediating surface and subsurface oceanic oil spills.

Depositionally controlled recycling of iron and sulfur in marine sediments and its isotopic consequences

NASA Astrophysics Data System (ADS)

Riedinger, N.; Formolo, M.; Arnold, G. L.; Vossmeyer, A.; Henkel, S.; Sawicka, J.; Kasten, S.; Lyons, T. W.

2011-12-01

The continental margin off Uruguay and Argentina is characterized by highly dynamic depositional conditions. This variable depositional regime significantly impacts the biogeochemical cycles of iron and sulfur. Mass deposit related redeposition of reduced minerals can lead to the reoxidation of these phases and thus to an overprint of their geochemical primary signatures. Due to rapid burial these oxidized phases are still present in deeper subsurface sediments. To study the effects of sediment relocation on the sulfur and iron inventory we collected shallow and deep subsurface sediment samples via multicorer and gravity cores, respectively, in the western Argentine Basin during the RV Meteor Expedition M78/3 in May-July 2009. The samples were retrieved from shelf, slope and deep basin sites. The concentration and sulfur isotope composition of acid volatile sulfur (AVS), chromium reducible sulfur (CRS), elemental sulfur and total organic sulfur were determined. Furthermore, sequential iron extraction techniques were applied assess the distribution of iron oxide phases within the sediment. The investigated sediments are dominated by terrigenous inputs, with high amounts of reactive ferric iron minerals and only low concentrations of calcium carbonate. Total organic carbon concentrations show strong variation in the shallow subsurface sediments ranging between approximately 0.7 and 6.4 wt% for different sites. These concentrations do not correlate with water depths. Pore water accumulations of hydrogen sulfide are restricted to an interval at the sulfate-methane transition (SMT) zone a few meters below the sediment surface. In these deeper subsurface sediments pyrite is precipitated in this zone of hydrogen sulfide excess, whereas the accumulation of authigenic AVS and elemental sulfur (up to 2000 ppm) occurs at the upper and lower boundary of the sulfidic zone due the reaction of iron oxides with limited amounts of sulfide. Furthermore, our preliminary results indicate that there is a link between modern deposition in the shallow subsurface sediments and the long-term signals being buried and preserved in the deep subsurface layers. The data show that the burial of elemental sulfur into deep subsurface sediments can fuel the deep biosphere and has consequences for isotopic overprints tied, for example, to oxidation and disproportionation processes in the deeper sediments.

Development of Surface Complexation Models of Cr(VI) Adsorption on Soils, Sediments and Model Mixtures of Kaolinite, Montmorillonite, γ-Alumina, Hydrous Manganese and Ferric Oxides and Goethite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koretsky, Carla

Hexavalent chromium is a highly toxic contaminant that has been introduced into aquifers and shallow sediments and soils via many anthropogenic activities. Hexavalent chromium contamination is a problem or potential problem in the shallow subsurface at several DOE sites, including Hanford, Idaho National Laboratory, Los Alamos National Laboratory and the Oak Ridge Reservation (DOE, 2008). To accurately quantify the fate and transport of hexavalent chromium at DOE and other contaminated sites, robust geochemical models, capable of correctly predicting changes in chromium chemical form resulting from chemical reactions occurring in subsurface environments are needed. One important chemical reaction that may greatlymore » impact the bioavailability and mobility of hexavalent chromium in the subsurface is chemical binding to the surfaces of particulates, termed adsorption or surface complexation. Quantitative thermodynamic surface complexation models have been derived that can correctly calculate hexavalent chromium adsorption on well-characterized materials over ranges in subsurface conditions, such pH and salinity. However, models have not yet been developed for hexavalent chromium adsorption on many important constituents of natural soils and sediments, such as clay minerals. Furthermore, most of the existing thermodynamic models have been developed for relatively simple, single solid systems and have rarely been tested for the complex mixtures of solids present in real sediments and soils. In this study, the adsorption of hexavalent chromium was measured as a function of pH (3-10), salinity (0.001 to 0.1 M NaNO3), and partial pressure of carbon dioxide(0-5%) on a suite of naturally-occurring solids including goethite (FeOOH), hydrous manganese oxide (MnOOH), hydrous ferric oxide (Fe(OH)3), γ-alumina (Al2O3), kaolinite (Al2Si2O5(OH)4), and montmorillonite (Na3(Al, Mg)2Si4O10(OH)2-nH2O). The results show that all of these materials can bind substantial quantities of hexavalent chromium, especially at low pH. Unexpectedly, experiments with the clay minerals kaolinite and montmorillonite suggest that hexavalent chromium may interact with these solids over much longer periods of time than expected. Furthermore, hexavalent chromium may irreversibly bind to these solids, perhaps because of oxidation-reduction reactions occurring on the surfaces of the clay minerals. More work should be done to investigate and quantify these chemical reactions. Experiments conducted with mixtures of goethite, hydrous manganese oxide, hydrous ferric oxide, γ-alumina, montmorillonite and kaolinite demonstrate that it is possible to correctly predict hexavalent chromium binding in the presence of multiple minerals using thermodynamic models derived for the simpler systems. Further, these models suggest that of the six solid considered in this study, goethite is typically the solid to which most of the hexavalent chromium will bind. Experiments completed with organic-rich and organic-poor natural sediments demonstrate that in organic-rich substrates, organic matter is likely to control uptake of the hexavalent chromium. The models derived and tested in this study for hexavalent chromium binding to γ-alumina, hydrous manganese oxide, goethite, hydrous ferric oxide and clay minerals can be used to better predict changes in hexavalent chromium bioavailability and mobility in contaminated sediments and soils.« less

High-resolution dating of deep-sea clays using Sr isotopes in fossil fish teeth

NASA Astrophysics Data System (ADS)

Ingram, B. Lynn

1995-09-01

Strontium isotopic compostitions of ichthyoliths (microscopic fish remains) in deep-sea clays recovered from the North Pacific Ocean (ODP holes 885A, 886B, and 886C) are used to provide stratigraphic age control within these otherwise undatable sediments. Age control within the deep-sea clays is crucial for determining changes in sedimentation rates, and for calculating fluxes of chemical and mineral components to the sediments. The Sr isotopic ages are in excellent agreement with independent age datums from above (diatom ooze), below (basalt basement) and within (Cretaceous-Tertiary boundary) the clay deposit. The 87Sr/ 86Sr ratios of fish teeth from the top of the pelagic clay unit (0.708989), indicate an Late Miocene age (5.8 Ma), as do radiolarian and diatom biostratigraphic ages in the overlying diatom ooze. The 87Sr/ 86Sr ratio (0.707887) is consistent with a Cretaceous-Tertiary boundary age, as identified by anomalously high iridium, shocked quartz, and sperules in Hole 886C. The 87Sr/ 86Sr ratios of pretreated fish teeth from the base of the clay unit are similar to Late Cretaceous seawater (0.707779-0.707519), consistent with radiometric ages from the underlying basalt of 81 Ma. Calculation of sedimentation rates based on Sr isotopic ages from Hole 886C indicate an average sedimentation rate of 17.7 m/Myr in Unit II (diatom ooze), 0.55 m/Myr in Unit IIIa (pelagic clay), and 0.68 m/Myr in Unit IIIb (distal hydrothermal precipitates). The Sr isotopic ages indicate a period of greatly reduced sedimentation (or possible hiatus) between about 35 and 65 Ma (Eocene-Paleocene), with a linear sedimentation rate of only 0.04 m/Myr The calculated sedimentation rates are generally inversely proportional to cobalt accumulation rates and ichthyolith abundances. However, discrepancies between Sr isotope ages and cobalt accumulation ages of 10-15 Myr are evident, particularly in the middle of the clay unit IIIa (Oligocene-Paleocene).

Plasmid incidence in bacteria from deep subsurface sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Hicks, R.J.; Li, S.W.

Bacteria were isolated from deep terrestrial subsurface sediments underlying the coastal plain of South Carolina. A total of 163 isolates from deep sediments, surface soil, and return drill muds were examined for plasmid DNA content and resistance to the antibiotics penicillin, ampicillin, carbenicillin, streptomycin, kanamycin, and tetracycline. MICs of Cu{sup 2+}, Cr{sup 3+}, and Hg{sup 2+} for each isolate were also determined. The overall frequency of plasmid occurrence in the subsurface bacteria was 33%. Resistance was most frequent to penicillin (70% of all isolates), ampicillin (49%), and carbenicillin (32%) and was concluded to be related to the concentrations of themore » individual antibiotics in the disks used for assaying resistance and to the production of low levels of {beta}-lactamase. The frequencies of resistance to penicillin and ampicillin were significantly greater for isolates bearing plasmids than for plasmidless isolates; however, resistance was not transferable to penicillin-sensitive Escherichia coli. Hybridization of subsurface bacterial plasmids and chromosomal DNA with a whole-TOL-plasmid (pWWO) probe revealed some homology of subsurface bacterial plasmid and chromosomal DNAs, indicating a potential for those bacterial to harbor catabolic genes on plasmids or chromosomes. The incidences of antibiotic resistance and MICs of metals for subsurface bacteria were significantly different from those drill mud bacteria, ruling out the possibility that bacteria from sediments were derived from drill muds.« less

Mineral Influence on Microbial Survival During Carbon Sequestration

NASA Astrophysics Data System (ADS)

Santillan, E. U.; Shanahan, T. M.; Wolfe, W. W.; Bennett, P.

2012-12-01

CO2 sequestered in a deep saline aquifer will perturb subsurface biogeochemistry by acidifying the groundwater and accelerating mineral diagenesis. Subsurface microbial communities heavily influence geochemistry through their metabolic processes, such as with dissimilatory iron reducing bacteria (DIRB). However, CO2 also acts as a sterilant and will perturb these communities. We investigated the role of mineralogy and its effect on the survival of microbes at high PCO2 conditions using the model DIRB Shewanella oneidensis MR-1. Batch cultures of Shewanella were grown to stationary phase and exposed to high PCO2 using modified Parr reactors. Cell viability was then determined by plating cultures after exposure. Results indicate that at low PCO2 (2 bar), growth and iron reduction are decreased and cell death occurs within 1 hour when exposed to CO2 pressures of 10 bar or greater. Further, fatty acid analysis indicates microbial lipid degradation with C18 fatty acids being the slowest lipids to degrade. When cultures were grown in the presence of rocks or minerals representative of the deep subsurface such as carbonates and silicates and exposed to 25 bar CO2, survival lasted beyond 2 hours. The most effective protecting substratum was quartz sandstone, with cultures surviving beyond 8 hours of CO2 exposure. Scanning electron microscope images reveal biofilm formation on the mineral surfaces with copious amounts of extracellular polymeric substances (EPS) present. EPS from these biofilms acts as a reactive barrier to the CO2, slowing the penetration of CO2 into cells and resulting in increased survival. When biofilm cultures were grown with Al and As to simulate the release of toxic metals from minerals such as feldspars and clays, survival time decreased, indicating mineralogy may also enhance microbial death. Biofilms were then grown on iron-coated quartz sand to determine conversely what influence biofilms may have on mineral dissolution during CO2 perturbation. Growth media was allowed to flow through a sand-packed column at a constant flow rate with pulses of liquid CO2 injected directly into the column. Preliminary data of dissolved iron measured from the effluent indicates that biofilm columns show a slight increase in dissolved iron concentrations before and after CO2 exposure in comparison to abiotic columns. These findings imply the important relationship between microbes and minerals during CO2 sequestration. The ability minerals have to contribute to the selection of microbes has important consequences to the survival of different microbial populations in the subsurface and the consequent biogeochemical changes that may happen.

Impact of clay minerals on sulfate-reducing activity in aquifers

USGS Publications Warehouse

Wong, D.; Suflita, J.M.; McKinley, J.P.; Krumholz, L.R.

2004-01-01

Previous studies have shown that sulfate-reduction activity occurs in a heterogeneous manner throughout the terrestrial subsurface. Low-activity regions are often observed in the presence of clay minerals. Here we report that clays inhibit sulfate reduction activity in sediments and in a pure culture of Desulfovibriovulgaris. Clay minerals including bentonite and kaolinite inhibited sulfate reduction by 70–90% in sediments. Intact clays and clay colloids or soluble components, capable of passing through a 0.2-µm filter, were also inhibitory to sulfate-reducing bacteria. Other adsorbent materials, including anion or cation exchangers and a zeolite, did not inhibit sulfate reduction in sediments, suggesting that the effect of clays was not due to their cation-exchange capacity. We observed a strong correlation between the Al2O3content of clays and their relative ability to inhibit sulfate reduction in sediments (r2 = 0.82). This suggested that inhibition might be a direct effect of Al3+ (aq) on the bacteria. We then tested pure aluminum oxide (Al2O3) and showed it to act in a similar manner to clay. As dissolved aluminum is known to be toxic to a variety of organisms at low concentrations, our results suggest that the effects of clay on sulfate-reducing bacteria may be directly due to aluminum. Thus, our experiments provide an explanation for the lack of sulfate-reduction activity in clay-rich regions and presents a mechanism for the effect.

Lithology and characteristic of landslide in Gombel Hill by 2D geoelectric resistivity method using dipole-dipole configuration

NASA Astrophysics Data System (ADS)

Setyawan, Agus; Satria Fikri, Muhammad; Endro Suseno, Jatmiko; Fuad, Muhamad

2018-05-01

Gombel hill locates at Semarang, Central Java, Indonesia. Base on Semarang’s susceptiblity map zone, Gombel hill is belong to high susceptibility and instability zone. Instability may cause faults to Gombel hill area, unfortunately the geosciences research in Gombel is still lack. The geophysical survey has been conducted using 2D geoelectric resistivity method with dipole – dipole configuration to identify the lithology of landslide at Gombel hill. The data have been collected from three lines. The first and third line have 100 m length, and the second line have 80 m length with 5 m space in each lines. The data were processed and modelled using Res2Dinv software. From the first line, suspected there are two layers which formed the structure of the subsurface. The second line suspected there are three layers which formed the structure of the subsurface. And the last line suspected there are two layers which formed the structure of the subsurface. Overall, the landslide of Gombel hill area can be found with depth 5 m – 6 m and found at contact between clay and clay rock layer. We expect the results can be used for mitigation hazard and planning the developing infrastructure in Gombel area.

Integrated geoelectrical survey for groundwater and shallow subsurface evaluation: case study at Siliyin spring, El-Fayoum, Egypt

NASA Astrophysics Data System (ADS)

Metwaly, Mohamed; El-Qady, Gad; Massoud, Usama; El-Kenawy, Abeer; Matsushima, Jun; Al-Arifi, Nasser

2010-09-01

Siliyin spring is one of the many natural fresh water springs in the Western Desert of Egypt. It is located at the central part of El-Fayoum Delta, which is a potential place for urban developments and touristic activities. Integrated geoelectrical survey was conducted to facilitate mapping the groundwater resources and the shallow subsurface structures in the area. Twenty-eight transient electromagnetic (TEM) soundings, three vertical electrical soundings (VES) and three electrical resistivity tomography (ERT) profiles were carried out around the Siliyin spring location. The dense cultivation, the rugged topography and the existence of infra structure in the area hindered acquiring more data. The TEM data were inverted jointly with the VES and ERT, and constrained by available geological information. Based on the inversion results, a set of geoelectrical cross-sections have been constructed. The shallow sand to sandy clay layer that forms the shallow aquifer has been completely mapped underneath and around the spring area. Flowing of water from the Siliyin spring is interconnected with the lateral lithological changes from clay to sand soil. Exploration of the extension of Siliyin spring zone is recommended. The interpretation emphasizes the importance of integrating the geoelectrical survey with the available geological information to obtain useful, cheap and fast lithological and structural subsurface information.

Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge.

PubMed

Cui, Zhisong; Lai, Qiliang; Dong, Chunming; Shao, Zongze

2008-08-01

The bacteria involved in the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in deep sea subsurface environments are largely unknown. In order to reveal their biodiversity, sediments from 2.2 m under the bottom surface at a water depth of 3542 m were sampled on the Middle Atlantic Ridge with a gravity column sampler. The sediments were promptly enriched with either crude oil or a mixture of PAHs (naphthalene, phenanthrene and pyrene) as the sole carbon source, and further enriched with the PAH mixture mentioned above in the lab. The resulting consortia were named C2CO and C2PPN respectively. Their bacterial composition was analysed with plate cultivation, PCR-DGGE and 16S rDNA library analysis. On plates, isolates belonging to Pseudoalteromonas, Halomonas, Marinobacter, Thalassospira and Tistrella dominated the culturable populations. With PCR-DGGE, five major bands closely related to Cycloclasticus, Alteromonas, Thalassospira, Alcanivorax and Rhodospirillaceae were detected in consortium C2CO, while only one major band of Cycloclasticus was detected in consortium C2PPN. In addition, the dynamics of community structure in response to aromatic substrate alterations were examined. As a result, three ribotypes of Cycloclasticus were detected by 16S rDNA library analysis, one which played a key role in phenanthrene degradation; two Alteromonas bacteria dominated the naphthalene reselected consortium. Although bacteria of the two genera grew as the main members of the communities, none of them were isolated, probably owing to their poor cultivability. These results confirm that bacteria of Cycloclasticus are important obligate PAH degraders in marine environments, and coexist with other degrading bacteria that inhabit the deep subsurface sediment of the Atlantic. This supports the view that PAH accumulation and bioattenuation occur in remote areas consistently and continuously.

Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge

PubMed Central

Cui, Zhisong; Lai, Qiliang; Dong, Chunming; Shao, Zongze

2008-01-01

The bacteria involved in the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in deep sea subsurface environments are largely unknown. In order to reveal their biodiversity, sediments from 2.2 m under the bottom surface at a water depth of 3542 m were sampled on the Middle Atlantic Ridge with a gravity column sampler. The sediments were promptly enriched with either crude oil or a mixture of PAHs (naphthalene, phenanthrene and pyrene) as the sole carbon source, and further enriched with the PAH mixture mentioned above in the lab. The resulting consortia were named C2CO and C2PPN respectively. Their bacterial composition was analysed with plate cultivation, PCR-DGGE and 16S rDNA library analysis. On plates, isolates belonging to Pseudoalteromonas, Halomonas, Marinobacter, Thalassospira and Tistrella dominated the culturable populations. With PCR-DGGE, five major bands closely related to Cycloclasticus, Alteromonas, Thalassospira, Alcanivorax and Rhodospirillaceae were detected in consortium C2CO, while only one major band of Cycloclasticus was detected in consortium C2PPN. In addition, the dynamics of community structure in response to aromatic substrate alterations were examined. As a result, three ribotypes of Cycloclasticus were detected by 16S rDNA library analysis, one which played a key role in phenanthrene degradation; two Alteromonas bacteria dominated the naphthalene reselected consortium. Although bacteria of the two genera grew as the main members of the communities, none of them were isolated, probably owing to their poor cultivability. These results confirm that bacteria of Cycloclasticus are important obligate PAH degraders in marine environments, and coexist with other degrading bacteria that inhabit the deep subsurface sediment of the Atlantic. This supports the view that PAH accumulation and bioattenuation occur in remote areas consistently and continuously. PMID:18445026

Technical Challenges of Drilling on Mars

NASA Technical Reports Server (NTRS)

Briggs, Geoffrey; Gross, Anthony; Condon, Estelle (Technical Monitor)

2002-01-01

In the last year, NASA's Mars science advisory committee (MEPAG: Mars Exploration Payload Advisory Group) has formally recommended that deep drilling be undertaken as a priority investigation to meet astrobiology and geology goals. This proposed new dimension in Mars exploration has come about for several reasons. Firstly, geophysical models of the martian subsurface environment indicate that we may well find liquid water (in the form of brines) under ground-ice at depths of several kilometers near the equator. On Earth we invariably find life forms associated with any environmental niche that supports liquid water. New data from the Mars Global Surveyor have shown that the most recent volcanism on Mars is very young so we cannot rule out contemporary volcanism -- in which case subsurface temperatures consistent with having water in its liquid phase may be found at relatively shallow depths. Secondly, in recent decades we have learned to our surprise that the Earth's subsurface (microbial) biosphere extends to depths of many kilometers and this discovery provides the basis for planning to explore the martian subsurface in search of ancient or even extant microbial life forms. We know (from Viking measurements) that all the biogenic elements (C, H, O, N, P, S) are available on Mars. What we therefore hope to learn is whether or not the evolution of life is inevitable given the necessary ingredients and, by implication, whether the Universe may be teeming with life. The feasibility of drilling deep into the surface of Mars has been the subject of increasing attention within NASA (and more recently among some of its international partners) for several years and this led to a broad-based feasibility study carried out by the Los Alamos National Laboratory and, subsequently, to the development of several hardware prototypes. This paper is intended to provide a general survey of that activity.

Energy Requirements of Hydrogen-utilizing Microbes: A Boundary Condition for Subsurface Life

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Alperin, Marc J.; Albert, Daniel B.; Martens, Christopher S.

2003-01-01

Microbial ecosystems based on the energy supplied by water-rock chemistry carry particular significance in the context of geo- and astrobiology. With no direct dependence on solar energy, lithotrophic microbes could conceivably penetrate a planetary crust to a depth limited only by temperature or pressure constraints (several kilometers or more). The deep lithospheric habitat is thereby potentially much greater in volume than its surface counterpart, and in addition offers a stable refuge against inhospitable surface conditions related to climatic or atmospheric evolution (e.g., Mars) or even high-energy impacts (e.g., early in Earth's history). The possibilities for a deep microbial biosphere are, however, greatly constrained by life s need to obtain energy at a certain minimum rate (the maintenance energy requirement) and of a certain minimum magnitude (the energy quantum requirement). The mere existence of these requirements implies that a significant fraction of the chemical free energy available in the subsurface environment cannot be exploited by life. Similar limits may also apply to the usefulness of light energy at very low intensities or long wavelengths. Quantification of these minimum energy requirements in terrestrial microbial ecosystems will help to establish a criterion of energetic habitability that can significantly constrain the prospects for life in Earth's subsurface, or on other bodies in the solar system. Our early work has focused on quantifying the biological energy quantum requirement for methanogenic archaea, as representatives of a plausible subsurface metabolism, in anoxic sediments (where energy availability is among the most limiting factors in microbial population growth). In both field and laboratory experiments utilizing these sediments, methanogens retain a remarkably consistent free energy intake, in the face of fluctuating environmental conditions that affect energy availability. The energy yields apparently required by methanogens in these sediment systems for sustained metabolism are about half that previously thought necessary. Lowered energy requirements would imply that a correspondingly greater proportion of the planetary subsurface could represent viable habitat for microorganisms.

Carbon mineralization in surface and subsurface soils in a subtropical mixed forest in central China

NASA Astrophysics Data System (ADS)

Liu, F.; Tian, Q.

2014-12-01

About a half of soil carbon is stored in subsurface soil horizons, their dynamics have the potential to significantly affect carbon balancing in terrestrial ecosystems. However, the main factors regulating subsurface soil carbon mineralization are poorly understood. As affected by mountain humid monsoon, the subtropical mountains in central China has an annual precipitation of about 2000 mm, which causes strong leaching of ions and nutrition. The objectives of this study were to monitor subsurface soil carbon mineralization and to determine if it is affected by nutrient limitation. We collected soil samples (up to 1 m deep) at three locations in a small watershed with three soil layers (0-10 cm, 10-30 cm, below 30 cm). For the three layers, soil organic carbon (SOC) ranged from 35.8 to 94.4 mg g-1, total nitrogen ranged from 3.51 to 8.03 mg g-1, microbial biomass carbon (MBC) ranged from 170.6 to 718.4 μg g-1 soil. We measured carbon mineralization with the addition of N (100 μg N/g soil), P (50 μg P/g soil), and liable carbon (glucose labeled by 5 atom% 13C, at five levels: control, 10% MBC, 50% MBC, 100% MBC, 200% MBC). The addition of N and P had negligible effects on CO2 production in surface soil layers; in the deepest soil layer, the addition of N and P decreased CO2 production from 4.32 to 3.20 μg C g-1 soil carbon h-1. Glucose addition stimulated both surface and subsurface microbial mineralization of SOC, causing priming effects. With the increase of glucose addition rate from 10% to 200% MBC, the primed mineralization rate increased from 0.19 to 3.20 μg C g-1 soil carbon h-1 (fifth day of glucose addition). The magnitude of priming effect increased from 28% to 120% as soil layers go deep compare to the basal CO2 production (fifth day of 200% MBC glucose addition, basal CO2 production rate for the surface and the deepest soil was 11.17 and 2.88 μg C g-1 soil carbon h-1). These results suggested that the mineralization of subsurface carbon is more sensitive to nutrient addition, and carbon mineralization in this layer is likely limited by carbon availability. Thus, any changes in environment conditions (global warming, nitrogen deposition, precipitation pattern change etc.) that affect the distribution of fresh carbon in soil profiles could then stimulate the release of deep soil carbon.

Microbial abundance in the deep subsurface of the Chesapeake Bay impact crater: Relationship to lithology and impact processes

USGS Publications Warehouse

Cockell, Charles S.; Gronstal, Aaron L.; Voytek, Mary A.; Kirshtein, Julie D.; Finster, Kai; Sanford, Ward E.; Glamoclija, Mihaela; Gohn, Gregroy S.; Powars, David S.; Horton, J. Wright

2009-01-01

Asteroid and comet impact events are known to cause profound disruption to surface ecosystems. The aseptic collection of samples throughout a 1.76-km-deep set of cores recovered from the deep subsurface of the Chesapeake Bay impact structure has allowed the study of the subsurface biosphere in a region disrupted by an impactor. Microbiological enumerations suggest the presence of three major microbiological zones. The upper zone (127–867 m) is characterized by a logarithmic decline in microbial abundance from the surface through the postimpact section of Miocene to Upper Eocene marine sediments and across the transition into the upper layers of the impact tsunami resurge sediments and sediment megablocks. In the middle zone (867–1397 m) microbial abundances are below detection. This zone is predominantly quartz sand, primarily composed of boulders and blocks, and it may have been mostly sterilized by the thermal pulse delivered during impact. No samples were collected from the large granite block (1096–1371 m). The lowest zone (below 1397 m) of increasing microbial abundance coincides with a region of heavily impact-fractured, hydraulically conductive suevite and fractured schist. These zones correspond to lithologies influenced by impact processes. Our results yield insights into the influence of impacts on the deep subsurface biosphere.

Looking For a Needle in the Haystack: Deciphering Indigenous 1.79 km Deep Subsurface Microbial Communities from Drilling Mud Contaminants Using 454 Pyrotag Sequencing

NASA Astrophysics Data System (ADS)

Dong, Y.; Cann, I.; Mackie, R.; Price, N.; Flynn, T. M.; Sanford, R.; Miller, P.; Chia, N.; Kumar, C. G.; Kim, P.; Sivaguru, M.; Fouke, B. W.

2010-12-01

Knowledge of the composition, structure and activity of microbial communities that live in deeply buried sedimentary rocks is fundamental to the future of subsurface biosphere stewardship as it relates to hydrocarbon exploration and extraction, carbon sequestration, gas storage and groundwater management. However, the study of indigenous subsurface microorganisms has been limited by the technical challenges of collecting deep formation water samples that have not been heavily contaminated by the mud used to drill the wells. To address this issue, a “clean-sampling method” deploying the newly developed Schlumberger Quicksilver MDT probe was used to collect a subsurface sample at a depth of 1.79 km (5872 ft) from an exploratory well within Cambrian-age sandstones in the Illinois Basin. This yielded a formation water sample that was determined to have less than 4% drilling mud contamination based on tracking changes in the aqueous geochemistry of the formation water during ~3 hours of pumping at depth prior to sample collection. A suite of microscopy and culture-independent molecular analyses were completed using the DNA extracted from microbial cells in the formation water, which included 454 amplicon pyrosequencing that targeted the V1-V3 hypervariable region of bacterial 16S rRNA gene sequences. Results demonstrated an extremely low diversity microbial community living in formation water at 1.79 km-depth. More than 95 % of the total V1-V3 pyrosequencing reads (n=11574) obtained from the formation water were affiliated with a halophilic γ-proteobacterium and most closely related to the genus Halomonas. In contrast, about 3 % of the V1-V3 sequences in the drilling mud library (n=13044) were classified as genus Halomonas but were distinctly different and distantly related to the formation water Halomonas detected at 1.79 km-depth. These results were consistent with those obtained using a suite of other molecular screens (e.g., Terminal-Restriction Fragment Length Polymorphism (T-RFLP) and the initial full length 16S rRNA amplicon libraries) and bioinformatic analyses (e.g., 16S rRNA and Open Reading Frame (ORF) calls established from the 454 metagenomic community analyses). Functional pathway modeling is underway to evaluate the adaptation of this indigenous microbial community to the hydrologic and geologic history of the deep subsurface environment of the Illinois Basin.

Low Cost, Low Power, Passive Muon Telescope for Interrogating Martian Sub-Surface

NASA Technical Reports Server (NTRS)

Kedar, Sharon; Tanaka, Hirukui; Naudet, Charles; Plaut, Jeffrey J.; Jones, Cathleen E.; Webb, Frank H.

2012-01-01

It has been demonstrated on Earth that a low power, passive muon detector can penetrate deep into geological structures up to several kilometers in size providing high density images of their interiors. Muon tomography is an entirely new class of planetary instrumentation that is ideally suited to address key areas in Mars Science, such as: the search for life and habitable environments, the distribution and state of water and ice and the level of geologic activity on Mars today.

Change in ocean subsurface environment to suppress tropical cyclone intensification under global warming.

PubMed

Huang, Ping; Lin, I-I; Chou, Chia; Huang, Rong-Hui

2015-05-18

Tropical cyclones (TCs) are hazardous natural disasters. Because TC intensification is significantly controlled by atmosphere and ocean environments, changes in these environments may cause changes in TC intensity. Changes in surface and subsurface ocean conditions can both influence a TC's intensification. Regarding global warming, minimal exploration of the subsurface ocean has been undertaken. Here we investigate future subsurface ocean environment changes projected by 22 state-of-the-art climate models and suggest a suppressive effect of subsurface oceans on the intensification of future TCs. Under global warming, the subsurface vertical temperature profile can be sharpened in important TC regions, which may contribute to a stronger ocean coupling (cooling) effect during the intensification of future TCs. Regarding a TC, future subsurface ocean environments may be more suppressive than the existing subsurface ocean environments. This suppressive effect is not spatially uniform and may be weak in certain local areas.

Change in ocean subsurface environment to suppress tropical cyclone intensification under global warming

PubMed Central

Huang, Ping; Lin, I. -I; Chou, Chia; Huang, Rong-Hui

2015-01-01

Tropical cyclones (TCs) are hazardous natural disasters. Because TC intensification is significantly controlled by atmosphere and ocean environments, changes in these environments may cause changes in TC intensity. Changes in surface and subsurface ocean conditions can both influence a TC's intensification. Regarding global warming, minimal exploration of the subsurface ocean has been undertaken. Here we investigate future subsurface ocean environment changes projected by 22 state-of-the-art climate models and suggest a suppressive effect of subsurface oceans on the intensification of future TCs. Under global warming, the subsurface vertical temperature profile can be sharpened in important TC regions, which may contribute to a stronger ocean coupling (cooling) effect during the intensification of future TCs. Regarding a TC, future subsurface ocean environments may be more suppressive than the existing subsurface ocean environments. This suppressive effect is not spatially uniform and may be weak in certain local areas. PMID:25982028

Effect of potential vorticity flux on the circulation in the South China Sea

NASA Astrophysics Data System (ADS)

Zhu, Yaohua; Sun, Junchuan; Wang, Yonggang; Wei, Zexun; Yang, Dezhou; Qu, Tangdong

2017-08-01

This study analyzes temperature and salinity products from the U.S. Navy Generalized Digital Environment Model. To avoid the fictitious assumption of no-motion reference level, a P-vector inverse method is employed to derive geostrophic velocity. Line integral of geostrophic velocity shows evidence for the existence of a sandwiched circulation in the South China Sea (SCS), i.e., cyclonic circulation in the subsurface and deep layers and anticyclonic in the intermediate layer. To reveal the factors responsible for the sandwiched circulation, we derive the potential vorticity equation based on a four-and-a-half-layer quasi-geostrophic model and apply theoretical potential vorticity constraint to density layers. The result shows that the sandwiched circulation is largely induced by planetary potential vorticity flux through lateral boundaries, mainly the Luzon Strait. This dynamical mechanism lies in the fact that the net potential vorticity inflow in the subsurface and deep layers leads to a positive layer-average vorticity in the SCS basin, yielding vortex stretching and a cyclonic basin-wide circulation. On the contrary, the net potential vorticity outflow in the intermediate layer induces a negative layer-average vorticity, generating an anticyclonic basin-wide circulation in the SCS. Furthermore, by illustrating different consequence from depth/density layers, we clarify that density layers are essential for applying theoretical potential vorticity constraint to the isolated deep SCS basin.

Interactions Between Chlorinated Waste Solvents and Clay Minerals in Low Permeability Subsurface Layers

NASA Astrophysics Data System (ADS)

Ayral, D.; Otero-Diaz, M.; Demond, A. H.

2014-12-01

Waste organic contaminants stored in low permeability subsurface layers serve as long-term sources for dissolved phase contaminant plumes. These layers may have a different mineralogical make up than the surrounding geologic media; specifically, they may be characterized by a high clay content. Although these layers are often considered inert, interactions may occur between the clay minerals and the waste liquids that may influence transport. Measurements of the basal spacing of Na-montmorillonite in contact with pure chlorinated organic liquids such as trichloroethylene (TCE) showed that it is similar to that with water; however, its basal spacing in contact with waste chlorinated liquids was reduced, leading to cracking. In fact, the basal spacing in contact with the waste chlorinated liquids was closer to that in contact with air than in contact with water. The observation that contact with pure organic liquids did not cause cracking, but contact with chlorinated wastes obtained from the field did, suggests that other components of the waste are critical to the basal spacing reduction process. Screening experiments indicated that the presence of a binary mixture of surfactants, a nonionic and an anionic surfactant, in the chlorinated solvent were necessary to cause the cracking at the same rate and magnitude as the chlorinated wastes obtained from the field. Fourier transform infrared (FT-IR) spectroscopy measurements suggest that the mixture alters the adsorbed water OH-bending band, implying a displacement of adsorbed water. Coupling these results with sorption and x-ray diffraction (XRD) measurements, a hypothesis of component conformation in the clay interlayer space that leads to cracking can be constructed.

Applications of ichnology to hydrogeology, with examples from the Cape Fear Formation (Cretaceous), South Carolina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, A.J.; Simones, G.C.

Ichnology, the study of modern and ancient traces left by organisms, has provided supplemental information to geologic subdisciplines such as sedimentology and stratigraphy. The major objective of the authors paper is to emphasize the valuable information that can be conveyed by trace fossils in the investigation of hydrogeologic units. Bioturbation has a net effect of mixing different types and layers of sediments, such as introducing clays into sands and vice versa. This mixing can decrease porosity and permeability of sandy units, thus changing potential aquifers into confining units. For example, a sandy fluvial deposit will contain distinctive nonmarine trace fossils,more » thus defining channel sands that may serve as permeable conduits for ground-water flow. In contrast, a sandy shelf deposit will contain marine trace fossils in a sand body geometry that will be markedly different from aquifers produced in nonmarine environments. Bioturbation also causes geochemical and diagenetic changes in sediments, causing irrigation of previously anoxic sediments and precipitation of ion oxides. The Cretaceous Cape Fear Formation of the Atlantic Coastal Plain, in the subsurface of South Carolina, is presented as an example of a hydrogeologic unit that has been reinterpreted using ichnologic data. Extensive bioturbation caused mixing of clays and sands in Cape Fear sediments, which resulted in the Cape Fear becoming a regional confining system. Trace fossil assemblages indicate a brackish water environment, perhaps estuarine, for the Cape Fear, as opposed to previous interpretations of fluvial and deltaic environments. Bioturbated zones also have significantly more oxidized iron than unbioturbated zones, highlighting potential effects on ground-water quality.« less

Degradation of Nitrobenzene Using Bio-Reduced Fe-Clays: Progress Towards the Development of an in-situ Groundwater Remediation Technology

NASA Astrophysics Data System (ADS)

White, M. L.; Fialips, C. I.

2008-12-01

Clay minerals are widely used in agricultural, industrial and environmental engineering applications due to their specific physical and chemical properties and their high abundance in soils in sediments. Currently however, Fe-bearing clays are not widely exploited in these applied fields. Fe-rich smectites, such as nontronite, can contain up to 20wt% of Fe2O3 as structural Fe(III) and if a suitable electron donor is available, this Fe(III) can be utilized by Fe-reducing bacteria as a terminal electron acceptor. When reduced, the overall reactivity of Fe-smectites changes, particularly where interactions with water and various organic compounds are involved. For instance, the presence of reduced Fe-smectites has been found to induce the degradation of certain organic contaminants found in groundwaters and the subsurface, e.g. chlorinated aliphatics and nitroaromatic compounds. The goal of this study is to develop an in-situ groundwater remediation technology that targets redox- sensitive organics, in the form of a permeable Bio Fe-clay barrier. To achieve this, the iron-reducing bacterium Shewanella algae BrY was first used to reduce structural FeIII in <2micron fractions of the Fe- rich smectite nontronite (NAu-2, 41.74wt% Fe2O3) and a Fe-bearing montmorrillonite (Speeton Clay, Yorkshire, UK, ~8wt% Fe2O3). S. algae BrY was able to reduce structural FeIII within these clays to maximum Fe(II)/Fe(II)+Fe(III) ratios 0.34 and 0.19 for the nontronite and Speeton Clay, respectively, in the presence and absence of the electron shuttle, AQDS (9, 10-anthraquinone-2, 6-disulfonic acid). These results are novel because the capability of S. algae BrY to reduce structural Fe(III) in smectite clays has not previously been tested. Nitrobenzene was selected as the test redox-sensitive organic compound as it is a common subsurface contaminant and is of global ecotoxicological concern. To test the capability of bio- reduced Fe-clays to transform nitrobenzene to aniline (the less toxic and more stable degradation product of nitrobenzene), nontronite suspensions with reduction levels of 20% and 30% were spiked with various concentrations of nitrobenzene and monitored for 5 days. Results showed that when reduced clay, S. algae BrY and AQDS were present, 100% of the nitrobenzene had been transformed to aniline within 24 hours. Further recent results suggest that bio-reduced nontronite alone is also capable of degrading nitrobenzene but at a slower rate than when AQDS is present. Future experiments will constrain absorption and degradation rates of nitrobenzene in contact with the reduced Fe-clays and the role(s) of the Fe-reducing bacteria. Results to date will be presented.

Surface and subsurface geologic risk factors to ground water affecting brownfield redevelopment potential.

PubMed

Kaufman, Martin M; Murray, Kent S; Rogers, Daniel T

2003-01-01

A model is created for assessing the redevelopment potential of brownfields. The model is derived from a space and time conceptual framework that identifies and measures the surface and subsurface risk factors present at brownfield sites. The model then combines these factors with a contamination extent multiplier at each site to create an index of redevelopment potential. Results from the application of the model within an urbanized watershed demonstrate clear differences between the redevelopment potential present within five different near-surface geologic units, with those units containing clay being less vulnerable to subsurface contamination. With and without the extent multiplier, the total risk present at the brownfield sites within all the geologic units is also strongly correlated to the actual costs of remediation. Thus, computing the total surface and subsurface risk within a watershed can help guide the remediation efforts at broad geographic scales, and prioritize the locations for redevelopment.

Two-dimensional resistivity investigation of the North Cavalcade Street site, Houston, Texas, August 2003

USGS Publications Warehouse

Kress, Wade H.; Teeple, Andrew

2005-01-01

Forward modeling was used as an interpretative tool to relate the subsurface distribution of resistivity from four DC resistivity lines to known, assumed, and hypothetical information on subsurface lithologies. The final forward models were used as an estimate of the true resistivity structure for the field data. The forward models and the inversion results of the forward models show the depth, thickness, and extent of strata as well as the resistive anomalies occurring along the four lines and the displacement of strata resulting from the Pecore Fault along two of the four DC resistivity lines. Ten additional DC resistivity lines show similarly distributed shallow subsurface lithologies of silty sand and clay strata. Eight priority areas of resistive anomalies were identified for evaluation in future studies. The interpreted DC resistivity data allowed subsurface stratigraphy to be extrapolated between existing boreholes resulting in an improved understanding of lithologies that can influence contaminant migration.

Adsorption of Dissolved Gases (CH4, CO2, H2, Noble Gases) by Water-Saturated Smectite Clay Minerals

NASA Astrophysics Data System (ADS)

Bourg, I. C.; Gadikota, G.; Dazas, B.

2016-12-01

Adsorption of dissolved gases by water-saturated clay minerals plays important roles in a range of fields. For example, gas adsorption in on clay minerals may significantly impact the formation of CH4 hydrates in fine-grained sediments, the behavior of CH4 in shale, CO2 leakage across caprocks of geologic CO2 sequestration sites, H2 leakage across engineered clay barriers of high-level radioactive waste repositories, and noble gas geochemistry reconstructions of hydrocarbon migration in the subsurface. Despite its importance, the adsorption of gases on clay minerals remains poorly understood. For example, some studies have suggested that clay surfaces promote the formation of CH4 hydrates, whereas others indicate that clay surfaces inhibit the formation of CH4 hydrates. Here, we present molecular dynamics (MD) simulations of the adsorption of a range of gases (CH4, CO2, H2, noble gases) on clay mineral surfaces. Our results indicate that the affinity of dissolved gases for clay mineral surfaces has a non-monotone dependence on the hydrated radius of the gas molecules. This non-monotone dependence arises from a combination of two effects: the polar nature of certain gas molecules (in particular, CO2) and the templating of interfacial water structure by the clay basal surface, which results in the presence of interfacial water "cages" of optimal size for intermediate-size gas molecules (such as Ne or Ar).

SHERLOC on Mars 2020

NASA Astrophysics Data System (ADS)

Beegle, L. W.; Bhartia, R.; DeFlores, L. P.; Abbey, W.; Asher, S. A.; Burton, A. S.; Fries, M.; Conrad, P. G.; Clegg, S. M.; Wiens, R. C.; Edgett, K. S.; Ehlmann, B. L.; Nealson, K. H.; Minitti, M. E.; Popp, J.; Langenhorst, F.; Sobron, P.; Steele, A.; Williford, K. H.; Yingst, R. A.

2017-12-01

The Scanning Habitable Environments with Raman & Luminescence for Organics & Chemicals (SHERLOC) investigation is part of the Mars 2020 integrated payload. SHERLOC enables non-contact, spatially resolved, and highly sensitivity detection and characterization of organics and minerals in the Martian surface and near subsurface. SHERLOC is an arm-mounted, Deep UV (DUV) resonance Raman and fluorescence spectrometer utilizing a 248.6-nm DUV laser. Deep UV induced native fluorescence is very sensitive to condensed carbon and aromatic organics, enabling detection at or below 10-6 w/w (1 ppm) at <100 µm spatial scales. SHERLOC's deep UV resonance Raman enables detection and classification of aromatic and aliphatic organics with sensitivities of 10-2 to below 10-4 w/w. In addition to organics, the deep UV Raman enables detection and classification of minerals relevant to aqueous chemistry with grain sizes below 20 µm. SHERLOC will be able to map the distribution of organic material with respect to visible features and minerals that are identifiable with the Raman spectrometer. These maps will enable analysis of the distribution of organics with minerals.

Impacts of Cation Type and Clay on Transport of Surface-modified Nanoparticles through Saturated Sand Columns

NASA Astrophysics Data System (ADS)

Torkzaban, S.; Wan, J.; Tokunaga, T. K.

2010-12-01

Transport of three different nanoparticles (NPs) was studied in columns packed with different sands (unwashed Accusand, washed Accusand, and ultrapure quartz) at different ionic strengths (IS) and cation types. The NPs were functionalized (polyacrylic acid) quantum dots (QDs), carboxylic-modified latex, and bare silica. Scanning electron microscopy (SEM) and energy-dispersive X-ray (EDX) analysis showed there were regions on the unwashed Accusand grains covered with clay particles. The SEM images of washed Accusand showed that the sand surfaces contained significantly less clay coatings. The breakthrough curves (BTCs) of QDs and latex NPs from unwashed Accusand columns showed minute deposition at 50 and 100 mM Na+. However, significant NP deposition occurred in unwashed Accusand columns at 0.5, 1, and 2 mM Ca2+. The amount of deposition increased as the Ca2+ concentration was increased. These results suggest that, in contrast to monovalent Na+, divalent Ca2+ enhanced deposition of the NPs. The BTCs of QDs and latex NPs in washed Accusand exhibited a similar trend as those of unwashed Accusand, however, much less deposition occurred at any given IS. The BTCs from the ultrapure quartz sand column showed negligible QD deposition at 2 mM Ca2+. Following completion of column experiments, a few Accusand sand grains were analyzed with SEM and the images showed that most of QDs were deposited on the clay surfaces. In contrast with our results from surface-modified NPs, the column experiments using bare silica NPs at 5 mM Ca2+ in unwashed Accusand showed negligible deposition. The enhanced deposition of surface-modified NPs may be attributed to cation bridging in which Ca2+ cations serve as a bridge between the NP, which contain carboxyl group on its surface, and negatively charged clay surfaces at 7. Because Ca2+ is commonly a major cation in groundwater, our results suggest that transport of carboxylic ligand-modified NPs may be very limited in subsurface environments.

An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers

PubMed Central

Kieft, Thomas L.; Kuloyo, Olukayode; Linage-Alvarez, Borja; van Heerden, Esta; Lindsay, Melody R.; Magnabosco, Cara; Wang, Wei; Wiggins, Jessica B.; Guo, Ling; Perlman, David H.; Kyin, Saw; Shwe, Henry H.; Harris, Rachel L.; Oh, Youmi; Yi, Min Joo; Purtschert, Roland; Slater, Greg F.; Ono, Shuhei; Wei, Siwen; Li, Long; Sherwood Lollar, Barbara; Onstott, Tullis C.

2016-01-01

Subsurface lithoautotrophic microbial ecosystems (SLiMEs) under oligotrophic conditions are typically supported by H2. Methanogens and sulfate reducers, and the respective energy processes, are thought to be the dominant players and have been the research foci. Recent investigations showed that, in some deep, fluid-filled fractures in the Witwatersrand Basin, South Africa, methanogens contribute <5% of the total DNA and appear to produce sufficient CH4 to support the rest of the diverse community. This paradoxical situation reflects our lack of knowledge about the in situ metabolic diversity and the overall ecological trophic structure of SLiMEs. Here, we show the active metabolic processes and interactions in one of these communities by combining metatranscriptomic assemblies, metaproteomic and stable isotopic data, and thermodynamic modeling. Dominating the active community are four autotrophic β-proteobacterial genera that are capable of oxidizing sulfur by denitrification, a process that was previously unnoticed in the deep subsurface. They co-occur with sulfate reducers, anaerobic methane oxidizers, and methanogens, which each comprise <5% of the total community. Syntrophic interactions between these microbial groups remove thermodynamic bottlenecks and enable diverse metabolic reactions to occur under the oligotrophic conditions that dominate in the subsurface. The dominance of sulfur oxidizers is explained by the availability of electron donors and acceptors to these microorganisms and the ability of sulfur-oxidizing denitrifiers to gain energy through concomitant S and H2 oxidation. We demonstrate that SLiMEs support taxonomically and metabolically diverse microorganisms, which, through developing syntrophic partnerships, overcome thermodynamic barriers imposed by the environmental conditions in the deep subsurface. PMID:27872277

Prospecting for Martian Ice from Orbit

NASA Technical Reports Server (NTRS)

Kanner, L. C.; Bell, M. S.; Allen, C. C.

2003-01-01

Recent data from the Gamma-Ray Spectrometer (GRS) on Mars Odyssey indicate the presence of a hydrogen-rich layer tens of centimeters thick in high latitudes on Mars. This hydrogen-rich layer correlates to previously determined regions of ice stability. It has been suggested that the subsurface hydrogen is ice and constitutes 35 plus or minus 15% by weight near the north and south polar regions. This study constrains the location of subsurface ice deposits on the scale of kilometers or smaller by combining GRS data with surface features indicative of subsurface ice. The most recognizable terrestrial geomorphic indicators of subsurface ice, formed in permafrost and periglacial environments, include thermokarst pits, pingos, pseudocraters and patterned ground. Patterned ground features have geometric forms such as circles, polygons, stripes and nets. This study focuses on the polygonal form of patterned ground, selected for its discernable shape and subsurface implications. Polygonal features are typically demarcated by troughs, beneath which grow vertical ice-wedges. Ice-wedges form in thermal contraction cracks in ice-rich soil and grow with annual freezing and thawing events repeated over tens of years. Ice wedges exist below the depth of seasonal freeze-thaw. Terrestrial ice wedges can be several meters deep and polygons can be tens of meters apart, and, on rare occasions, up to 1 km. The crack spacing of terrestrial polygons is typically 3 to 10 times the crack depth.

The Design and Implementation of Instruments for Low-Frequency Electromagnetic Sounding of the Martian Subsurface

NASA Technical Reports Server (NTRS)

Delory, G. T.; Grimm, R. E.

2003-01-01

Low-frequency electromagnetic soundings of the subsurface can identify liquid water at depths ranging from hundreds of meters to approx. 10 km in an environment such as Mars. Among the tools necessary to perform these soundings are low-frequency electric and magnetic field sensors capable of being deployed from a lander or rover such that horizontal and vertical components of the fields can be measured free of structural or electrical interference. Under a NASA Planetary Instrument Definition and Development Program (PIDDP), we are currently engaged in the prototype stages of low frequency sensor implementations that will enable this technique to be performed autonomously within the constraints of a lander platform. Once developed, this technique will represent both a complementary and alternative method to orbital radar sounding investigations, as the latter may not be able to identify subsurface water without significant ambiguities. Low frequency EM methods can play a crucial role as a ground truth measurement, performing deep soundings at sites identified as high priority areas by orbital radars. Alternatively, the penetration depth and conductivity discrimination of low-frequency methods may enable detection of subsurface water in areas that render radar methods ineffective. In either case, the sensitivity and depth of penetration inherent in low frequency EM exploration makes this tool a compelling candidate method to identify subsurface liquid water from a landed platform on Mars or other targets of interest.

Terrain and subsurface influences on runoff generation in a steep, deep, highly weathered system

NASA Astrophysics Data System (ADS)

Mallard, J. M.; McGlynn, B. L.; Richter, D. D., Jr.

2017-12-01

Our understanding of runoff generation in regions characterized by deep, highly weathered soils is incomplete, despite the prevalence occupation of these landscapes worldwide. To address this, we instrumented a first-order watershed in the Piedmont of South Carolina, USA, a region that extends east of the Appalachians from Maryland to Alabama, and home to some of the most rapid population growth in the country. Although regionally the relief is modest, the landscape is often highly dissected and local slopes can be steep and highly varied. The typical soils of the region are kaolinite dominated ultisols, with hydrologic properties controlled by argillic Bt horizons, often with >50% clay-size fraction. The humid subtropical climate creates relatively consistent precipitation intra-annually and seasonally variable energy availability. Consequently, the mixed deciduous and coniferous tree cover creates a strong evapotranspiration-mediated hydrologic dynamic. While moist soils and extended stream networks are typical from late fall through spring, relatively dry soils and contracting stream networks emerge in the summer and early fall. Here, we seek to elucidate the relative influence of the vertical soil and spatial terrain structure of this region on watershed hillslope hydrology and subsequent runoff generation. We installed a network of nested, shallow groundwater wells and soil water content probes within an ephemeral to first-order watershed to continuously measure soil and groundwater dynamics across soil horizons and landscape position. We also recorded local precipitation and discharge from this watershed. Most landscape positions exhibited minimal water table response to precipitation throughout dry summer periods, with infrequently observed responses rarely coincident with streamflow generation. In contrast, during the wetter late fall through early spring period, streamflow was driven by the interaction between transient perched water tables and topographically mediated redistribution of shallow groundwater downslope. Our findings suggest that understanding streamflow generation in regions possessing both complex terrain and complex vertical soil structure requires synchronous characterization of terrain mediated water redistribution and subsurface soil hydrology.

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments.

PubMed

Hernsdorf, Alex W; Amano, Yuki; Miyakawa, Kazuya; Ise, Kotaro; Suzuki, Yohey; Anantharaman, Karthik; Probst, Alexander; Burstein, David; Thomas, Brian C; Banfield, Jillian F

2017-08-01

Geological sequestration in deep underground repositories is the prevailing proposed route for radioactive waste disposal. After the disposal of radioactive waste in the subsurface, H 2 may be produced by corrosion of steel and, ultimately, radionuclides will be exposed to the surrounding environment. To evaluate the potential for microbial activities to impact disposal systems, we explored the microbial community structure and metabolic functions of a sediment-hosted ecosystem at the Horonobe Underground Research Laboratory, Hokkaido, Japan. Overall, we found that the ecosystem hosted organisms from diverse lineages, including many from the phyla that lack isolated representatives. The majority of organisms can metabolize H 2 , often via oxidative [NiFe] hydrogenases or electron-bifurcating [FeFe] hydrogenases that enable ferredoxin-based pathways, including the ion motive Rnf complex. Many organisms implicated in H 2 metabolism are also predicted to catalyze carbon, nitrogen, iron and sulfur transformations. Notably, iron-based metabolism is predicted in a novel lineage of Actinobacteria and in a putative methane-oxidizing ANME-2d archaeon. We infer an ecological model that links microorganisms to sediment-derived resources and predict potential impacts of microbial activity on H 2 consumption and retardation of radionuclide migration.

Bentonite Clay as a Natural Remedy: A Brief Review

PubMed Central

2017-01-01

Background: From old times, the human kind has used clays, externally or internally, for maintaining body health or treating some diseases. Meanwhile there are few scientific articles reviewing the beneficial effects of clays on body function. Bentonite clay is one of the available clays in nature, used as traditional habits, and remedies in many cultures. Methods: These articles explored among 2500 scientific articles published in PubMed to sort the scientific works have been done on the effects of this clay on body function (it was about 100 articles). Results: Bentonite has a broad range of action on different parts of body. Conclusion: As traditional remedies seem to have a deep root in maintaining body health, it merits doing more research works on bentonite clay and its impacts on body function. PMID:29026782

Physico-chemistry and geochemistry of Balengou clay deposit (West Cameroon) with inference to an argillic hydrothermal alteration

NASA Astrophysics Data System (ADS)

Tassongwa, Bernard; Eba, François; Njoya, Dayirou; Tchakounté, Jacqueline Numbem; Jeudong, Narcisse; Nkoumbou, Charles; Njopwouo, Daniel

2017-09-01

Field description and sampling along two pits, granulometry, Atterberg limits, mineralogical (XRD, FTIR, DSC & TGA) and geochemical analyses of the Balengou clays help to determine their characteristics and the genesis of the deposit. The mineralogical composition is comprised of halloysite-kaolinite, quartz, montmorillonite, hematite, anatase, feldspar, zircon, chromite, and apatite. Gibbsite and illite occur at the shallow and deep depth, respectively. Dikes of sand-poor clays contain also cristobalite and tridymite. Pairs of elements Rb-Ba, Rb-Sr, Nb-Ta, Ta-Zr, TiO2-Zr display good positive correlations (R2 > 0.85). REE patterns are highly fractionated (LaN up to 3312, LaN/YbN: 19-10) and are marked by deep Ce and Eu negative anomalies. Immobile element canonical ratios indicate that the protoliths were commendite/pantelerite, rhyolite and dacite, or their plutonic equivalents. Mineralogical and geochemical features lead to the suggestion that the clays derived from an advanced argillic hydrothermal alteration.

Analysis of ground penetrating radar data from the tunnel beneath the Temple of the Feathered Serpent in Teotihuacan, Mexico, using new multi-cross algorithms

NASA Astrophysics Data System (ADS)

López-Rodríguez, Flor; Velasco-Herrera, Víctor M.; Álvarez-Béjar, Román; Gómez-Chávez, Sergio; Gazzola, Julie

2016-11-01

The ground penetrating radar (GPR) -a non-invasive method based on the emission of electromagnetic waves and the reception of their reflections at the dielectric constant and electrical conductivity discontinuities of the materials surveyed- may be applied instead of the destructive and invasive methods used to find water in celestial bodies. As multichannel equipment is increasingly used, we developed two algorithms for multivariable wavelet analysis of GPR signals -multi-cross wavelet (MCW) and Fourier multi-cross function (FMC)- and applied them to analyze raw GPR traces of archeological subsurface strata. The traces were from the tunnel located beneath the Temple of the Feathered Serpent (The Citadel, Teotihuacan, Mexico), believed to represent the underworld, an outstanding region of the Mesoamerican mythology, home of telluric forces emanating from deities, where life was constantly created and recreated. GPR profiles obtained with 100 MHz antennas suggested the tunnel is 12-14 m deep and 100-120 m long with three chambers at its end, interpretations that were confirmed by excavations in 2014. Archeologists believe that due to the tunnel's sacredness and importance, one of the chambers may be the tomb of a ruler of the ancient city. The MCW and FMC algorithms determined the periods of subsurface strata of the tunnel. GPR traces inside-and-outside the tunnel/chamber, outside the tunnel/chamber and inside the tunnel/chamber analyzed with the MCW and filtered FMC algorithms determined the periods of the tunnel and chamber fillings, clay and matrix (limestone-clay compound). The tunnel filling period obtained by MCW analysis (14.37 ns) reflects the mixed limestone-clay compound of this stratum since its value is close to that of the period of the matrix (15.22 ns); periods of the chamber filling (11.40 ± 0.40 ns) and the matrix (11.40 ± 1.00 ns) were almost identical. FMC analysis of the tunnel obtained a period (5.08 ± 1.08 ns) close to that of the chamber (4.27 ± 0.82 ns), suggesting the tunnel and chamber are filled with similar materials. The use of both algorithms allows a deeper analysis since the similarities of the tunnel and chamber filling periods could not have been determined with the MCW algorithm alone. The successful application of the new multi-cross algorithms to archeological GPR data suggests they may also be used to search water and other resources in celestial bodies.

Submarine groundwater discharge into the coast revealed by water chemistry of man-made undersea liquefied petroleum gas cavern

NASA Astrophysics Data System (ADS)

Lee, Jin-Yong; Cho, Byung Wook

2008-10-01

SummaryThe occurrence of submarine groundwater discharge (SGD) as well as its supply of many nutrients and metals to coastal seawaters is now generally known. However, previous studies have focused on the chemical and radiological analysis of groundwater, surface seawater, shallow marine sediments and their pore waters, as well as the measurement of upward flow through the marine sediments, as end members of the discharge process. In this study, chemical and isotopic analysis results of marine subsurface waters are reported. These were obtained from deep boreholes of an undersea liquefied petroleum gas (LPG) storage cavern, located about 8 km off the western coast of Korea. The cavern is about 130-150 m below the sea bottom, which is covered by a 4.8-19.5 m silty clay stratum. An isotopic composition (δ 2H and δ 18O) of the marine subsurface waters falls on a mixing line between terrestrial groundwater and seawater. Vertical EC profiling at the cavern boreholes revealed the existence of a fresh water zone. An increase in the contents of ferrous iron and manganese and a decrease in levels of nitrate, bicarbonate and cavern seepage were recorded in August 2006, indicating a decreased submarine groundwater flux originating from land, mainly caused by an elevated cavern gas pressure. It is suggested in this study that the main source of fresh waters in the man-made undersea cavern is the submarine groundwater discharge mainly originating from the land.

IRON PRECIPITATION AND ARSENIC ATTENUATION - ASSESSMENT OF ARSENIC NATURAL ATTENUATION OF THE SUBSURFACE USING A GEOCHEMICAL MODEL (PHREEQC)

EPA Science Inventory

Laboratory experiments show that amorphous and poorly crystallized ferric iron hydroxides have much greater capacity to attenuate arsenic compared to clays and other aluminosilicate minerals. Studies (e.g., Lin and Qvarfort, 1996) showed that a sudden change in geochemical condit...

The effects of engineering fabric in street pavement on low bearing capacity soil in New Orleans : executive summary.

DOT National Transportation Integrated Search

1985-07-01

Subsurface soil in the New Orleans area is generally composed of peat and clay. The low bearing capacity of the soft natural soil has caused early deterioration of asphaltic concrete pavements which typically fail prior to carrying their designed loa...

Issues in subsurface exploration of ice sheets

NASA Technical Reports Server (NTRS)

French, L.; Carsey, F.; Zimmerman, W.

2000-01-01

Exploration of the deep subsurface ice sheets of Earth, Mars, Europa, and Titan has become a major consideration in addressing scientific objectives in climate change, extremophile biology, exobiology,chemical weathering, planetary evolution and ice dynamics.

Monitoring of organic contaminants in sediments using low field proton nuclear magnetic resonance

NASA Astrophysics Data System (ADS)

Zhang, Chi; Rupert, Yuri

2016-04-01

The effective monitoring of soils and groundwater contaminated with organic compounds is an important goal of many environmental restoration efforts. Recent geophysical methods such as electrical resistivity, complex conductivity, and ground penetrating radar have been successfully applied to characterize organic contaminants in the subsurface and to monitor remediation process both in laboratory and in field. Low field proton nuclear magnetic resonance (NMR) is a geophysical tool sensitive to the molecular-scale physical and chemical environment of hydrogen-bearing fluids in geological materials and shows promise as a novel method for monitoring contaminant remediation. This laboratory research focuses on measurements on synthetic samples to determine the sensitivity of NMR to the presence of organic contaminants and improve understanding of relationships between NMR observables, hydrological properties of the sediments, and amount and state of contaminants in porous media. Toluene, a light non-aqueous phase liquid (LNAPL) has been selected as a representative organic contaminant. Three types of porous media (pure silica sands, montmorillonite clay, and various sand-clay mixtures with different sand/clay ratios) were prepared as synthetic sediments. NMR relaxation time (T2) and diffusion-relaxation (D - T2) correlation measurements were performed in each sediment saturated with water and toluene mixed fluid at assorted concentrations (0% toluene and 100% water, 1% toluene and 99% water, 5% toluene and 95% water, 25% toluene and 75% water, and 100% toluene and 0% water) to 1) understand the effect of different porous media on the NMR responses in each fluid mixture, 2) investigate the role of clay content on T2 relaxation of each fluid, 3) quantify the amount hydrocarbons in the presence of water in each sediment, and 4) resolve hydrocarbons from water in D - T2 map. Relationships between the compositions of porous media, hydrocarbon concentration, and hydraulic properties of sediments will be presented and discussed. A minimum toluene detection limit has been established, and influences on NMR signals from increasing contaminant concentration have been investigated as well. It is evident in our data that the dominant control of porous media on NMR responses relies on clay content in the sand-clay mixture.

Biogenic Carbon on Mars: A Subsurface Chauvinistic Viewpoint

NASA Astrophysics Data System (ADS)

Onstott, T. C.; Lau, C. Y. M.; Magnabosco, C.; Harris, R.; Chen, Y.; Slater, G.; Sherwood Lollar, B.; Kieft, T. L.; van Heerden, E.; Borgonie, G.; Dong, H.

2015-12-01

A review of 150 publications on the subsurface microbiology of the continental subsurface provides ~1,400 measurements of cellular abundances down to 4,800 meter depth. These data suggest that the continental subsurface biomass is comprised of ~1016-17 grams of carbon, which is higher than the most recent estimates of ~1015 grams of carbon (1 Gt) for the marine deep biosphere. If life developed early in Martian history and Mars sustained an active hydrological cycle during its first 500 million years, then is it possible that Mars could have developed a subsurface biomass of comparable size to that of Earth? Such a biomass would comprise a much larger fraction of the total known Martian carbon budget than does the subsurface biomass on Earth. More importantly could a remnant of this subsurface biosphere survive to the present day? To determine how sustainable subsurface life could be in isolation from the surface we have been studying subsurface fracture fluids from the Precambrian Shields in South Africa and Canada. In these environments the energetically efficient and deeply rooted acetyl-CoA pathway for carbon fixation plays a central role for chemolithoautotrophic primary producers that form the base of the biomass pyramid. These primary producers appear to be sustained indefinitely by H2 generated through serpentinization and radiolytic reactions. Carbon isotope data suggest that in some subsurface locations a much larger population of secondary consumers are sustained by the primary production of biogenic CH4 from a much smaller population of methanogens. These inverted biomass and energy pyramids sustained by the cycling of CH4 could have been and could still be active on Mars. The C and H isotopic signatures of Martian CH4 remain key tools in identifying potential signatures of an extant Martian biosphere. Based upon our results to date cavity ring-down spectroscopic technologies provide an option for making these measurements on future rover missions.

The nature and function of microbial enzymes in subsurface marine sediments

NASA Astrophysics Data System (ADS)

Steen, A. D.; Schmidt, J.

2016-02-01

Isotopic and genomic evidence indicates that marine sediments contain populations of active heterotrophic microorganisms which appear to metabolize old, detrital, apparently recalcitrant organic matter. In surface communities, heterotrophs use extracellular enzymes to access complex organic matter. In subsurface sediments, in which microbial doubling times can be on the order of hundreds or thousands of years, it is not clear whether extracellular enzymes could remain stable and active long enough to constitute a 'profitable' stragtegy for accessing complex organic carbon. Here we present evidence that a wide range of extracellular enzyme are active in subsurface sediments from two different environments: the White Oak River, NC, and deep (up to 80 m) sediments of the Baltic Sea Basin recovered from IODP Expedition 347. In the White Oak River, enzymes from deeper sediments appear to be better-adapted to highly-degraded organic matter than enzymes from surface sediments. In the Baltic Sea, preliminary data suggest that enzymes related to nitrogen acquisition are preferentially expressed. By characterizing the extracellular enzymes present in marine sediments, we hope to achieve a better understanding of the mechanisms that control sedimentary organic matter remineralization and preservation.

Clay mineral formation and transformation in rocks and soils

USGS Publications Warehouse

Eberl, D.D.

1983-01-01

Three mechanisms for clay mineral formation (inheritance, neoformation, and transformation) operating in three geological environments (weathering, sedimentary, and diagenetic-hydrothermal) yield nine possibilities for the origin of clay minerals in nature. Several of these possibilities are discussed in terms of the rock cycle. The mineralogy of clays neoformed in the weathering environment is a function of solution chemistry, with the most dilute solutions favoring formation of the least soluble clays. After erosion and transportation, these clays may be deposited on the ocean floor in a lateral sequence that depends on floccule size. Clays undergo little reaction in the ocean, except for ion exchange and the neoformation of smectite; therefore, most clays found on the ocean floor are inherited from adjacent continents. Upon burial and heating, however, dioctahedral smectite reacts in the diagenetic environment to yield mixed-layer illite-smectite, and finally illite. With uplift and weathering, the cycle begins again. Refs.

Spatial Probability Distribution of Strata's Lithofacies and its Impacts on Land Subsidence in Huairou Emergency Water Resources Region of Beijing

NASA Astrophysics Data System (ADS)

Li, Y.; Gong, H.; Zhu, L.; Guo, L.; Gao, M.; Zhou, C.

2016-12-01

Continuous over-exploitation of groundwater causes dramatic drawdown, and leads to regional land subsidence in the Huairou Emergency Water Resources region, which is located in the up-middle part of the Chaobai river basin of Beijing. Owing to the spatial heterogeneity of strata's lithofacies of the alluvial fan, ground deformation has no significant positive correlation with groundwater drawdown, and one of the challenges ahead is to quantify the spatial distribution of strata's lithofacies. The transition probability geostatistics approach provides potential for characterizing the distribution of heterogeneous lithofacies in the subsurface. Combined the thickness of clay layer extracted from the simulation, with deformation field acquired from PS-InSAR technology, the influence of strata's lithofacies on land subsidence can be analyzed quantitatively. The strata's lithofacies derived from borehole data were generalized into four categories and their probability distribution in the observe space was mined by using the transition probability geostatistics, of which clay was the predominant compressible material. Geologically plausible realizations of lithofacies distribution were produced, accounting for complex heterogeneity in alluvial plain. At a particular probability level of more than 40 percent, the volume of clay defined was 55 percent of the total volume of strata's lithofacies. This level, equaling nearly the volume of compressible clay derived from the geostatistics, was thus chosen to represent the boundary between compressible and uncompressible material. The method incorporates statistical geological information, such as distribution proportions, average lengths and juxtaposition tendencies of geological types, mainly derived from borehole data and expert knowledge, into the Markov chain model of transition probability. Some similarities of patterns were indicated between the spatial distribution of deformation field and clay layer. In the area with roughly similar water table decline, locations in the subsurface having a higher probability for the existence of compressible material occur more than that in the location with a lower probability. Such estimate of spatial probability distribution is useful to analyze the uncertainty of land subsidence.

Koster van Groos, A F

NASA Astrophysics Data System (ADS)

Guggenheim, S.

2008-12-01

The deep-ocean environment, including the ocean floor and crust, represents one of the last scientific frontiers on earth. The surprising lack of information on the mineralogy, the geochemical processes, or the biota of the ocean floor is the result of the inability to simulate ocean-floor conditions and to study geochemical systems at these conditions. A proto-type high-pressure environmental chamber (HPEC) has been constructed for use on a transmission- mode X-ray diffractometer to study geochemical processes at the deep-ocean sediment cover and crust. The HPEC has a designed pressure range to 1000 bars and temperature range from -20 oC to 200 oC. In this chamber, a liquid (e.g., sea water) plus sample in suspension can be pressurized either by gas or liquid. A cell-pump system continuously agitates the liquid to keep particles in suspension, thereby allowing the examination of mineral phases, including clays minerals. A major feature of the HPEC is that the mineral component moves freely and can react with its environment while being illuminated by the X-ray beam. The cell-pump also allows applied gas, such as CH4 or CO2, or O2, to interact efficiently with the aqueous liquid so that the system may rapidly reach equilibrium. In addition, mixing these gases with inert gases, e.g. He or Ar, allows control of the fugacity of these gas components. The design components and how data are manipulated to remove X-ray dispersion effects caused by the liquid will be discussed, along with examples showing the effects of temperature, pressure, and salt content on smectite clay.

Generation and stability of bentonite colloids at the bentonite/granite interface of a deep geological radioactive waste repository.

PubMed

Missana, Tiziana; Alonso, Ursula; Turrero, Maria Jesús

2003-03-01

The possible mechanisms of colloid generation at the near field/far field interface of a radioactive repository have been investigated by means of novel column experiments simulating the granite/bentonite boundary, both in dynamic and in quasi-static water flow conditions. It has been shown that solid particles and colloids can be detached from the bulk and mobilised by the water flow. The higher the flow rate, the higher the concentration of particles found in the water, according to an erosion process. However, the gel formation and the intrinsic tactoid structure of the clay play an important role in the submicron particle generation even in the compacted clay and in a confined system. In fact, once a bentonite gel is formed, in the regions where the clay is contacted with water, clay colloids can be formed even in quasi-static flow conditions. The potential relevance of these colloids in radionuclide transport has been studied by evaluating their stability in different chemical environments. The coagulation kinetics of natural bentonite colloids was experimentally studied as a function of the ionic strength and pH, by means of time-resolved light scattering techniques. It has been shown that these colloids are very stable in low saline (approximately 1 x 10(-3) M) and alkaline (pH > or = 8) waters. Copyright 2002 Elsevier Science B.V.

Organics-bearing Clays from the Rio Tinto (spain): A Novel Analog for the Phyllosilicates Outcrops Seen By Omega-mex

NASA Astrophysics Data System (ADS)

Bonaccorsi, Rosalba

2007-12-01

The Rio Tinto (RT) is considered an important analog of Sinus Meridiani on Mars and an ideal model analog for a subsurface Martian setting [1]. The RT system comprises the upper sequence of an acid rock drainage system where weathered iron -rich rocks, overlain a massive-pyrite deposit. The RT analog site is ideal for testing on the preservation of organics in hematite-rich vs. phyllosilicates-rich environments [3]. It is suggested here that RT near-surface rocks, which embed pockets of Clays, represent also a potential new model analog for the phyllosilicates-rich outcrops seen by OMEGA-MEx on the surface of Mars [5]. Results from the analysis of cores drilled under the 2005 Robotic experiment of the MARTE project (Borehole#7 Site 607cm) [2-3] are presented in this paper. Primary mineral assemblages include hematite, goethite, and Phyllosilicates e.g.,smectite, kaolinite, as quantified by X-ray diffraction [4]. Organic carbon is at low concentration (<0.05%) beneath the soil horizon in most cores dominated by iron minerals but is considerably higher in Phyllosilicate-rich levels i.e., 0.2-0.3Wt% at 385 -550 cm-depth [2-3]. Phyllosilicate-rich terrains have been identified OMEGA/MEx in the Nili Fossae, Mawrth Valles and Candor Chasma regions [e.g., 5]. These outcrops are surrounded by hematite-rich deposits, which are potentially barren in organics [6]. The potential of phyllosilicates to preserve higher amounts of organics/ biosignatures is well known for several Earth environments as well as the RT near subsurface. This potential brings a relevant element for the selection of candidate sites for the MSL mission [e.g., 1]. References: [1]Fernandez-Remolar et al.,2005 EPSL, 240,149-167; [2]Stoker et al., 2007; [3] Bonaccorsi et al., 2007; [4] Sutter et al., 2007 in Astrobiology,MARTE Spec. Issue; [5] Bibring et al., 2006, Science 312, 400-404; [6] Sumner, 2004, JGR 109. Anknowlegments: NASA-Postdoctoral-Program/C.Stoker, B.Sutter, A.F Davila and the MARTE team for valuable suggestions.

Initial characterization of mudstone nanoporosity with small angle neutron scattering using caprocks from carbon sequestration sites.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCray, John; Navarre-Sitchler, Alexis; Mouzakis, Katherine

Geological carbon sequestration relies on the principle that CO{sub 2} injected deep into the subsurface is unable to leak to the atmosphere. Structural trapping by a relatively impermeable caprock (often mudstone such as a shale) is the main trapping mechanism that is currently relied on for the first hundreds of years. Many of the pores of the caprock are of micrometer to nanometer scale. However, the distribution, geometry and volume of porosity at these scales are poorly characterized. Differences in pore shape and size can cause variation in capillary properties and fluid transport resulting in fluid pathways with different capillarymore » entry pressures in the same sample. Prediction of pore network properties for distinct geologic environments would result in significant advancement in our ability to model subsurface fluid flow. Specifically, prediction of fluid flow through caprocks of geologic CO{sub 2} sequestration reservoirs is a critical step in evaluating the risk of leakage to overlying aquifers. The micro- and nanoporosity was analyzed in four mudstones using small angle neutron scattering (SANS). These mudstones are caprocks of formations that are currently under study or being used for carbon sequestration projects and include the Marine Tuscaloosa Group, the Lower Tuscaloosa Group, the upper and lower shale members of the Kirtland Formation, and the Pennsylvanian Gothic shale. Total organic carbon varies from <0.3% to 4% by weight. Expandable clay contents range from 10% to {approx}40% in the Gothic shale and Kirtland Formation, respectively. Neutrons effectively scatter from interfaces between materials with differing scattering length density (i.e. minerals and pores). The intensity of scattered neutrons, I(Q), where Q is the scattering vector, gives information about the volume of pores and their arrangement in the sample. The slope of the scattering data when plotted as log I(Q) vs. log Q provides information about the fractality or geometry of the pore network. Results from this study, combined with high-resolution TEM imaging, provide insight into the differences in volume and geometry of porosity between these various mudstones.« less

Introduction to the hydrogeochemical investigations within the International Stripa Project

USGS Publications Warehouse

Nordstrom, D. Kirk; Olsson, T.; Carlsson, L.; Fritz, P.

1989-01-01

The International Stripa Project (1980-1990) has sponsored hydrogeochemical investigations at several subsurface drillholes in the granitic portion of an abandoned iron ore mine, central Sweden. The purpose has been to advance our understanding of geochemical processes in crystalline bedrock that may affect the safety assessment of high-level radioactive waste repositories. More than a dozen investigators have collected close to a thousand water and gas samples for chemical and isotopic analyses to develop concepts for the behavior of solutes in a granitic repository environment. The Stripa granite is highly radioactive and has provided an exceptional opportunity to study the behavior of natural radionuclides, especially subsurface production. Extensive microfracturing, low permeability with isolated fracture zones of high permeability, unusual water chemistry, and a typical granitic mineral assemblage with thin veins and fracture coatings of calcite, chlorite, seriate, epidote and quartz characterize the site. Preliminary groundwater flow modeling indicates that the mine has perturbed the flow environment to a depth of about 3 km and may have induced deep groundwaters to flow into the mine. ?? 1989.

Metabolic activity of subseafloor microbes in the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Morono, Y.; Ito, M.; Terada, T.; Inagaki, F.

2013-12-01

The South Pacific Gyre (SPG) is characterized as the most oligotrophic open ocean environment. The sediment is rich in oxygen but poor in energy-sources such as reduced organic matter, and hence harbors very low numbers of microbial cells in relatively shallow subseafloor sediment (D'Hondt et al., 2009; Kallmeyer et al., 2012). In such an energy-limited sedimentary habitat, a small size of microbial community persists living functions with extraordinary low oxygen-consumption rate (Røy et al., 2012). During IODP Expedition 329, a series of sediment samples were successfully recovered from 7 drill sites (U1365-1371) from the seafloor to basement in the SPG, providing an unprecedented opportunity to study metabolic activity of the aerobic subseafloor microbial communities. We initiated incubation onboard by adding stable isotope-labeled substrates to the freshly collected sediment sample, such as 13C and/or 15N-labeled bicarbonate, glucose, amino acids, acetate, and ammonium under the (micro-) aerobic condition. One of the technological challenges in this study is to harvest microbial cells from very low-biomass sediment samples for the analysis using nano-scale secondary ion mass spectrometry (NanoSIMS). To address the technical issue, we improved existing cell separation technique for the SPG sediment samples with small inorganic zeolitic grains. By monitoring cell recovery rates through an image-based cell enumeration technique (Morono et al., 2009), we found that cell recovery rates in the SPG sediment samples are generally lower than those in other oceanographic settings (i.e., organic-rich ocean margin sediments). To gain higher cell recovery ratio, we applied multiple density gradient layers, resulting in the cell recovery ratio up to around 80-95% (Morono et al., in press). Then, using the newly developed cell separation technique, we successfully sorted enough number of microbial cells in small spots on the membrane (i.e., 103 to 105 cells per spot). NanoSIMS analysis showed incorporation of the supplemented stable isotope-labeled substrates after 1.5 year-incubation. The substrate incorporation rates of individual microbial cell ranged in average from 1/10 to 1/2 of those values previously observed in an organic-rich ocean margin sediment (Morono et al., 2011). References S. D'Hondt et al., Subseafloor sedimentary life in the South Pacific Gyre. Proc Natl Acad Sci USA 106, 11651 (2009) J. Kallmeyeret al., Global distribution of microbial abundance and biomass in subseafloor sediment. Proc Natl Acad Sci USA 109, 16213 (2012) H. Røy et al., Aerobic microbial respiration in 86-million-year-old deep-sea red clay. Science 336, 922 (2012) Y. Morono et al. Discriminative detection and enumeration of microbial life in marine subsurface sediments. ISME J 3, 503 (2009) Y. Morono et al., An Improved Cell Separation Technique for Marine Subsurface Sediments: Applications for High-throughput Analysis Using Flow Cytometry and Cell Sorting. Environ Microbiol, (2013) Y. Morono et al., Carbon and nitrogen assimilation in deep subseafloor microbial cells. Proc Natl Acad Sci USA 108, 18295 (2011)

Biolog(TM) ID as compared to 16S ribosomal RNA ID for environmental isolates from the deep subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

McKinsey, P.C.

2000-05-05

The U.S. Dept of Energy (DOE) Subsurface Microbial Culture Collection (SMCC) contains nearly 10,000 strains of microorganisms isolated from terrestrial subsurface environments. Many of the aerobic, gram-negative, chemoheterotrophs isolated from the DOE Savannah River Site (SRS) have previously been identified by phylogenetic analysis of 16S ribosomal RNA (rRNA) gene nucleotide sequences. These SMCC isolates are currently being examined using Biolog GN Microplates and the Biolog Microstation System in order to gain knowledge of their metabolic capabilities and to compare Biolog IDs with 16S IDs. To accommodate the particular needs of these subsurface isolates, which are often incapable of growing undermore » high-nutrient conditions, Biolog's recommendations for inoculating isolates into Biolog GN Microplates have been altered. The isolates are grown on low nutrient media, sodium thioglycolate (3mM) is added to the culture media to inhibit capsule formation, and a low density of bacteria is inoculated into the microplate. Using these altered inoculation criteria, 60 percent of these SMCC isolates have a Biolog genus ID that matches the 16S rRNA ID. These results indicate that the Biolog System can be a good means of identifying unusual environmental isolates, even when recommended inoculation procedures are altered to accommodate particular isolate needs.« less

Growth of Iron(III)-Reducing Bacteria on Clay Minerals as the Sole Electron Acceptor and Comparison of Growth Yields on a Variety of Oxidized Iron Forms†

PubMed Central

Kostka, Joel E.; Dalton, Dava D.; Skelton, Hayley; Dollhopf, Sherry; Stucki, Joseph W.

2002-01-01

Smectite clay minerals are abundant in soils and sediments worldwide and are typically rich in Fe. While recent investigations have shown that the structural Fe(III) bound in clay minerals is reduced by microorganisms, previous studies have not tested growth with clay minerals as the sole electron acceptor. Here we have demonstrated that a pure culture of Shewanella oneidensis strain MR-1 as well as enrichment cultures of Fe(III)-reducing bacteria from rice paddy soil and subsurface sediments are capable of conserving energy for growth with the structural Fe(III) bound in smectite clay as the sole electron acceptor. Pure cultures of S. oneidensis were used for more detailed growth rate and yield experiments on various solid- and soluble-phase electron acceptors [smectite, Fe(III) oxyhydroxide FeOOH, Fe(III) citrate, and oxygen] in the same minimal medium. Growth was assessed as direct cell counts or as an increase in cell carbon (measured as particulate organic carbon). Cell counts showed that similar growth of S. oneidensis (108 cells ml−1) occurred with smectitic Fe(III) and on other Fe forms [amorphous Fe(III) oxyhydroxide, and Fe citrate] or oxygen as the electron acceptor. In contrast, cell yields of S. oneidensis measured as the increase in cell carbon were similar on all Fe forms tested while yields on oxygen were five times higher, in agreement with thermodynamic predictions. Over a range of particle loadings (0.5 to 4 g liter−1), the increase in cell number was highly correlated to the amount of structural Fe in smectite reduced. From phylogenetic analysis of the complete 16S rRNA gene sequences, a predominance of clones retrieved from the clay mineral-reducing enrichment cultures were most closely related to the low-G+C gram-positive members of the Bacteria (Clostridium and Desulfitobacterium) and the δ-Proteobacteria (members of the Geobacteraceae). Results indicate that growth with smectitic Fe(III) is similar in magnitude to that with Fe(III) oxide minerals and is dependent upon the mineral surface area available. Iron(III) bound in clay minerals should be considered an important electron acceptor supporting the growth of bacteria in soils or sedimentary environments. PMID:12450850

Study of the organic matter in the DSDP /JOIDES/ cores, legs 10-15. [Deep Sea Drilling Program

NASA Technical Reports Server (NTRS)

Simoneit, B. R. T.; Burlingame, A. L.

1974-01-01

The composition of the organic matter collected on legs 10 to 15 of the DSDP (Deep Sea Drilling Project) is described. Distributions of various alkanes, carboxylic acids, steroids and terpenoids, isoprenoid ketones and olefins, and aromatic polycyclic compounds are given. Samples analyzed had terrigenous clay components, with variable organic carbon contents and thus diverse solvent soluble matter. The distribution patterns for the various compound series monitored were of marine derivation, with the terrigenous components superimposed. Diagenesis of steroids appeared to proceed via both stanones and stanols to their respective steranes. Degradative processes were observed to be operative: oxidative products, mainly ketones derived from steroids and phytol, were identified, probably due to microbial alteration prior to or during sedimentation. Loss of alkane and fatty acid C preferences and presence of polycyclic aromatics evinced maturation. Results indicate that the accumulation, degradation, diagenesis and maturation of organic matter occurs in various steps in the deep sea environment.

Clay particles as binder for earth buildings materials: a fresh look into rheology of dense clay suspensions

NASA Astrophysics Data System (ADS)

Landrou, Gnanli; Brumaud, Coralie; Habert, Guillaume

2017-06-01

In the ceramic industry and in many sectors, clay minerals are widely used. In earthen construction technique, clay plays a crucial role in the processing. The purpose of this research is to understand and modify the clay properties in earth material to propose an innovative strategy to develop a castable earth-based material. To do so, we focused on the modification of clay properties at fresh state with inorganic additives. As the rheological behaviour of clays is controlled by their surface charge, the addition of phosphate anion allows discussing deep the rheology of concentrated clay suspensions. We highlighted the thixotropic and shear thickening behaviour of a dispersed kaolinite clay suspensions. Indeed, by adding sodium hexametaphosphate the workability of clay paste increases and the behaviour is stable during time after a certain shear is applied. Moreover, we stress that the aging and the shift in critical strain in clay system are due to the re-arrangement of clay suspension and a decrease of deformation during time. The understanding of both effect: thixotropy and aging are crucial for better processing of clay-based material and for self-compacting clay concrete. Yet, studies need to pursue to better understand the mechanism.

Understanding Subsurface Geoelectrical and Structural Constrains for Low Frequency Radar Sounding of Jovian Satellites

NASA Astrophysics Data System (ADS)

Heggy, Essam; Bruzzone, Lorenzo; Beck, Pierre; Doute, Sylvain; Gim, Youngyu; Herique, Alain; Kofman, Wlodek; Orosei, Roberto; Plaut, Jeffery; Rosen, Paul; Seu, Roberto

2010-05-01

Thermally stable Ice sheets on earth are known to be among the most favorable geophysical contexts for deep subsurface sounding radars. Penetrations ranging from few to several hundreds of meters have been observed at 10 to 60 MHz when sounding homogenous and pure ice sheets in Antarctica and in Alaskan glaciers. Unlike the terrestrial case, ice sheets on Jovian satellites are older formations with a more complex matrix of mineral inclusions with an even three dimensional distribution on the surface and subsurface that is yet to be understood in order to quantify its effect on the dielectric attenuation at the experiment sounding frequencies. Moreover, ridges, tectonic and shock features, may results in a complex and heterogeneous subsurface structure that can induce scattering attenuation with different amplitudes depending on the subsurface heterogeneity levels. Such attenuation phenomena's has to be accounted in the instrument design and future data analysis in order to optimize the science return, reduce mission risk and define proper operation modes. In order to address those challenges in the current performance studies and instrument design of the proposed radar sounding experiments, we present an attempt to quantify both the dielectric and scattering losses on both icy satellites, Ganymede and Europa, based on experimental dielectric characterization of relevant icy-dust mixtures samples, field work from analog environment and radar propagation simulations in parametric subsurface geophysical models representing potential geological scenarios of the two Jovian satellites. Our preliminary results suggest that the use of a dual band radar enable to overcome several of these constrains and reduces ambiguities associated subsurface interface mapping. Acknowledgement. This research is carried out by the Jet Propulsion Laboratory/Caltech, under a grant from the National Aeronautics and Space Administration.

The Influence of Syndepositional Macropores on the Hydraulic Integrity of Thick Alluvial Clay Aquitards

NASA Astrophysics Data System (ADS)

Timms, Wendy A.; Acworth, R. Ian; Crane, Richard A.; Arns, Christoph H.; Arns, Ji-Youn; McGeeney, Dayna E.; Rau, Gabriel C.; Cuthbert, Mark O.

2018-04-01

Clay-rich deposits are commonly assumed to be aquitards which act as natural hydraulic barriers due to their low hydraulic connectivity. Postdepositional weathering processes are known to increase the permeability of aquitards in the near surface but not impact on deeper parts of relatively thick formations. However, syndepositional processes affecting the hydraulic properties of aquitards have previously received little attention in the literature. Here, we analyze a 31 m deep sediment core recovered from an inland clay-rich sedimentary sequence using a combination of techniques including particle size distribution and microscopy, centrifuge dye tracer testing and micro X-ray CT imaging. Subaerial deposition of soils within these fine grained alluvial deposits has led to the preservation of considerable macropores (root channels or animal burrows). Connected pores and macropores thus account for vertical hydraulic conductivity (K) of 4.2×10-9 m/s (geometric mean of 13 samples) throughout the thick aquitard, compared to a matrix K that is likely <10-10 m/s, the minimum K value that was measured. Our testing demonstrates that such syndepositional features may compromise the hydraulic integrity of what otherwise appears to have the characteristics of a much lower permeability aquitard. Heterogeneity within a clay-rich matrix could also enhance vertical connectivity, as indicated by digital analysis of pore morphology in CT images. We highlight that the paleo-environment under which the sediment was deposited must be considered when aquitards are investigated as potential natural hydraulic barriers and illustrate the value of combining multiple investigation techniques for characterizing clay-rich deposits.

Trends and Future Challenges in Sampling the Deep Terrestrial Biosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilkins, Michael J.; Daly, Rebecca; Mouser, Paula J.

2014-09-12

Research in the deep terrestrial biosphere is driven by interest in novel biodiversity and metabolisms, biogeochemical cycling, and the impact of human activities on this ecosystem. As this interest continues to grow, it is important to ensure that when subsurface investigations are proposed, materials recovered from the subsurface are sampled and preserved in an appropriate manner to limit contamination and ensure preservation of accurate microbial, geochemical, and mineralogical signatures. On February 20th, 2014, a workshop on “Trends and Future Challenges in Sampling The Deep Subsurface” was coordinated in Columbus, Ohio by The Ohio State University and West Virginia University faculty,more » and sponsored by The Ohio State University and the Sloan Foundation’s Deep Carbon Observatory. The workshop aims were to identify and develop best practices for the collection, preservation, and analysis of terrestrial deep rock samples. This document summarizes the information shared during this workshop.« less

Effect of alternative surface inlet designs on sediment and phosphorus drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

The Sunny Point Formation: a new Upper Cretaceous subsurface unit in the Carolina Coastal Plain

USGS Publications Warehouse

Balson, Audra E.; Self-Trail, Jean; Terry, Dennis O.

2013-01-01

This paper formally defines the Sunny Point Formation, a new Upper Cretaceous subsurface unit confined to the outer Atlantic Coastal Plain of North and South Carolina. Its type section is established in corehole NH-C-1-2001 (Kure Beach) from New Hanover County, North Carolina. The Sunny Point Formation consists of light-olive-gray to greenish-gray, fine to coarse micaceous sands and light-olive-brown and grayish-red silty, sandy clays. The clay-rich sections typically include ironstone, lignitized wood, root traces, hematite concretions, goethite, limonite, and sphaerosiderites. The Sunny Point Formation is also documented in cores from Bladen County, North Carolina, and from Dorchester and Horry Counties, South Carolina. Previously, strata of the Sunny Point Formation had been incorrectly assigned to the Cape Fear and Middendorf Formations. The Sunny Point occupies a stratigraphic position above the Cenomanian marine Clubhouse Formation and below an upper Turonian unnamed marine unit. Contacts between these units are sharp and unconformable. Calcareous nannofossil and palynomorph analyses indicate that the Sunny Point Formation is Turonian.

Water-level altitudes 2013 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973--2012 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

USGS Publications Warehouse

Kasmarek, Mark C.; Johnson, Michaela R.; Ramage, Jason K.

2013-01-01

Compaction of subsurface sediments (mostly in the clay and silt layers) of the Chicot and Evangeline aquifers was recorded continuously by 13 borehole extensometers at 11 sites that were either activated or installed between 1973 and 1980. For the period of record beginning in 1973 (or later depending on activation or installation date) and ending in December 2012, cumulative measured compaction by 12 of the 13 extensometers ranged from 0.100 ft at the Texas City-Moses Lake extensometer to 3.632 ft at the Addicks extensometer (data were used from only one of two extensometers at one site). The rate of compaction varies from site to site because of differences in groundwater withdrawals near each site and differences among sites in the clay-to-sand ratio in the subsurface sediments. Therefore, it is not possible to extrapolate or infer a rate of compaction for adjacent areas based on the rate of compaction measured at a nearby extensometer.

Water-level altitudes 2014 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2013 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

USGS Publications Warehouse

Kasmarek, Mark C.; Johnson, Michaela R.; Ramage, Jason K.

2014-01-01

Compaction of subsurface sediments (mostly in the fine-grained clay and silt layers) composing the Chicot and Evangeline aquifers was recorded continuously by using analog technology at the 13 borehole extensometers at 11 sites that were either activated or installed between 1973 and 1980. For the period of record beginning in 1973 (or later depending on activation or installation date) and ending in December 2013, measured cumulative compaction at the 13 extensometers ranged from 0.100 ft at the Texas City-Moses Lake extensometer to 3.654 ft at the Addicks extensometer. The rate of compaction varies from site to site because of differences in rates of groundwater withdrawal in the areas adjacent to each extensometer site and differences among sites in the ratios of clay, silt, and sand and compressibility of the subsurface sediments. Therefore, it is not appropriate to extrapolate or infer a rate of compaction for an adjacent area on the basis of the rate of compaction measured at nearby extensometers.

Development and application of a hillslope hydrologic model

USGS Publications Warehouse

Blain, C.A.; Milly, P.C.D.

1991-01-01

A vertically integrated two-dimensional lateral flow model of soil moisture has been developed. Derivation of the governing equation is based on a physical interpretation of hillslope processes. The lateral subsurface-flow model permits variability of precipitation and evapotranspiration, and allows arbitrary specification of soil-moisture retention properties. Variable slope, soil thickness, and saturation are all accommodated. The numerical solution method, a Crank-Nicolson, finite-difference, upstream-weighted scheme, is simple and robust. A small catchment in northeastern Kansas is the subject of an application of the lateral subsurface-flow model. Calibration of the model using observed discharge provides estimates of the active porosity (0.1 cm3/cm3) and of the saturated horizontal hydraulic conductivity (40 cm/hr). The latter figure is at least an order of magnitude greater than the vertical hydraulic conductivity associated with the silty clay loam soil matrix. The large value of hydraulic conductivity derived from the calibration is suggestive of macropore-dominated hillslope drainage. The corresponding value of active porosity agrees well with a published average value of the difference between total porosity and field capacity for a silty clay loam. ?? 1991.

Contamination assessment in microbiological sampling of the Eyreville core, Chesapeake Bay impact structure

USGS Publications Warehouse

Gronstal, A.L.; Voytek, M.A.; Kirshtein, J.D.; Von der, Heyde; Lowit, M.D.; Cockell, C.S.

2009-01-01

Knowledge of the deep subsurface biosphere is limited due to difficulties in recovering materials. Deep drilling projects provide access to the subsurface; however, contamination introduced during drilling poses a major obstacle in obtaining clean samples. To monitor contamination during the 2005 International Continental Scientific Drilling Program (ICDP)-U.S. Geological Survey (USGS) deep drilling of the Chesapeake Bay impact structure, four methods were utilized. Fluorescent microspheres were used to mimic the ability of contaminant cells to enter samples through fractures in the core material during retrieval. Drilling mud was infused with a chemical tracer (Halon 1211) in order to monitor penetration of mud into cores. Pore water from samples was examined using excitation-emission matrix (EEM) fl uorescence spectroscopy to characterize dissolved organic carbon (DOC) present at various depths. DOC signatures at depth were compared to signatures from drilling mud in order to identify potential contamination. Finally, microbial contaminants present in drilling mud were identified through 16S ribosomal deoxyribonucleic acid (rDNA) clone libraries and compared to species cultured from core samples. Together, these methods allowed us to categorize the recovered core samples according to the likelihood of contamination. Twenty-two of the 47 subcores that were retrieved were free of contamination by all the methods used and were subsequently used for microbiological culture and culture-independent analysis. Our approach provides a comprehensive assessment of both particulate and dissolved contaminants that could be applied to any environment with low biomass. ?? 2009 The Geological Society of America.

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the oceanic crust deep biosphere

NASA Astrophysics Data System (ADS)

Carr, S. A.; Jungbluth, S.; Rappe, M. S.; Orcutt, B.

2017-12-01

The marine sedimentary and crustal subsurface biospheres harbor many uncultured microorganisms, including those belonging to Hydrothermarchaeota, formerly known as Marine Benthic Group E. SSU rRNA sequences of Hydrothermarchaeota have been identified in marine sediments across the globe, often in low abundance. Recently, crustal fluids from two subseafloor borehole observatories located on the eastern flank of the Juan de Fuca Ridge (i.e., CORKs at IODP Holes U1362A and U1362B), were collected for single-cell and metagenomic analyses. Both techniques revealed Hydrothermarchaeota to be prevalent in this system. Collectively, single-cell amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) depict Hydrothermarchaeota as opportunists, potentially capable of dissimilative and assimilative carboxydotrophy, sulfate reduction, thiosulfate reduction, nitrate reduction, chemotaxis, and motility. We propose that this diverse suit of metabolic potential may be advantageous for the hydrologically and geochemically dynamic subsurface crustal aquifer, an environment thought to be energy and nutrient limited.

Novel determination of radon-222 velocity in deep subsurface rocks and the feasibility to using radon as an earthquake precursor

NASA Astrophysics Data System (ADS)

Zafrir, Hovav; Ben Horin, Yochai; Malik, Uri; Chemo, Chaim; Zalevsky, Zeev

2016-09-01

A novel technique utilizing simultaneous radon monitoring by gamma and alpha detectors to differentiate between the radon climatic driving forces and others has been improved and used for deep subsurface investigation. Detailed long-term monitoring served as a proxy for studying radon movement within the shallow and deep subsurface, as well as for analyzing the effect of various parameters of the radon transport pattern. The main achievements of the investigation are (a) determination, for the first time, of the radon movement velocity within rock layers at depths of several tens of meters, namely, 25 m/h on average; (b) distinguishing between the diurnal periodical effect of the ambient temperature and the semidiurnal effect of the ambient pressure on the radon temporal spectrum; and (c) identification of a radon random preseismic anomaly preceding the Nuweiba, M 5.5 earthquake of 27 June 2015 that occurred within Dead Sea Fault Zone.

Non-viable Microbial Community Structure and Geochemistry of Deep Subsurface Shales at Marcellus Shale Energy and Environment Laboratory

NASA Astrophysics Data System (ADS)

Akondi, R.; Trexler, R.; Sharma, S.; Mouser, P. J.; Pfiffner, S. M.

2016-12-01

The deep subsurface is known to harbor diverse communities of living microbes, and can therefore be expected to also harbor an equally diverse and likely different set of non-viable microbial populations. In this study, diglyceride fatty acids, (DGFA, biomarkers for non-viable microbes) as well as their compound specific isotopes (CSIA) were used to study the yield and variety of DGFAs in deep subsurface mid-Devonian sediments of different lithologies. Pristine sidewall cores were obtained from intervals in the Marcellus, Mahantango, and the Marcellus/Mahantango formation interface. The biomarkers were extracted and DGFAs were methylated to fatty acid methyl esters (FAMEs) and analyzed using GC-MS, while the CSIAs were performed using GC-irMS. Sediments were also analyzed for total organic carbon (TOC), stable carbon isotopic composition of organic carbon (δ13Corg), inorganic carbon (δ13Ccarb), and nitrogen (δ15Norg). TOC concentration was highest in the Marcellus and there was a general trend of increasing TOC from Mahantango to the Marcellus. The δ13Corg and δ13Ccarb increased and decreased respectively from Mahantango to the Marcellus while δ15Norg did not show any trend. The FAME profiles consisted of normal saturated, monounsaturated, polyunsaturated, branched, epoxy, terminally branched, hydroxyl, and dimethyl esters. The total biomass yield and variety of DGFA-FAME profiles were higher in the Mahantango compared to the samples from the Marcellus formation and Marcellus/Mahantango interface, suggesting the presence of more paleo-microbial activity in the less consolidated Mahantango formation. We attribute this to the smaller pore throat sizes within the Marcellus formation compared to the Mahantango formation. Since organic matter in the sediments is also one of the key sources of energy for microbial metabolism, bulk 13C and CSIA of the lipids will be used to understand the source(s) and pathways of the carbon cycling within the microbial communities.

Tc(VII) and Cr(VI) Interaction with Naturally Reduced Ferruginous Smectite from a Redox Transition Zone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qafoku, Odeta; Pearce, Carolyn I.; Neumann, Anke

Fe(II)-rich clay minerals found in subsurface redox transition zones (RTZs) can serve as important source of electron equivalents limiting the transport of redox active contaminants. While most laboratory reactivity studies are based on reduced model clays, the reactivity of naturally reduced clays in field samples remains poorly explored. Characterization of the clay size fraction of a fine-grained unit from RTZ interface at the Hanford site, Washington, including mineralogy, crystal chemistry, and Fe(II)/(III) content, indicates that ferruginous montmorillonite is the dominant mineralogical component. Oxic and anoxic fractions differ significantly in Fe(II) concentration, but FeTOTAL remains constant demonstrating no Fe loss duringmore » reduction-oxidation cycling. At its native pH of 8.6, the anoxic fraction despite its significant Fe(II) (~23% of FeTOTAL), exhibits minimal reactivity with TcO4- and CrO42- and much slower reaction kinetics than that measured in studies with biologically/chemically reduced model clays. Reduction capacity is enhanced by added Fe(II) (if Fe(II)SORBED >8% clay Fe(II)LABILE), however the kinetics of this conceptually surface-mediated reaction remain sluggish. Surface-sensitive Fe L-edge X-ray absorption spectroscopy shows that Fe(II)SORBED and the resulting reducing equivalents are not available in the outermost few nanometers of clay surfaces. Slow kinetics thus appear related to diffusion-limited access to electron equivalents retained within clay mineral.« less

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

PubMed Central

Fichtel, Katja; Logemann, Jörn; Fichtel, Jörg; Rullkötter, Jürgen; Cypionka, Heribert; Engelen, Bert

2015-01-01

Microbial life in deep marine subsurface faces increasing temperatures and hydrostatic pressure with depth. In this study, we have examined growth characteristics and temperature-related adaptation of the Desulfovibrio indonesiensis strain P23 to the in situ pressure of 30 MPa. The strain originates from the deep subsurface of the eastern flank of the Juan de Fuca Ridge (IODP Site U1301). The organism was isolated at 20°C and atmospheric pressure from ~61°C-warm sediments approximately 5 m above the sediment–basement interface. In comparison to standard laboratory conditions (20°C and 0.1 MPa), faster growth was recorded when incubated at in situ pressure and high temperature (45°C), while cell filamentation was induced by further compression. The maximum growth temperature shifted from 48°C at atmospheric pressure to 50°C under high-pressure conditions. Complementary cellular lipid analyses revealed a two-step response of membrane viscosity to increasing temperature with an exchange of unsaturated by saturated fatty acids and subsequent change from branched to unbranched alkyl moieties. While temperature had a stronger effect on the degree of fatty acid saturation and restructuring of main phospholipids, pressure mainly affected branching and length of side chains. The simultaneous decrease of temperature and pressure to ambient laboratory conditions allowed the cultivation of our moderately thermophilic strain. This may in turn be one key to a successful isolation of microorganisms from the deep subsurface adapted to high temperature and pressure. PMID:26500624

Safety-relevant hydrogeological properties of the claystone barrier of a Swiss radioactive waste repository: An evaluation using multiple lines of evidence

NASA Astrophysics Data System (ADS)

Gautschi, Andreas

2017-09-01

In Switzerland, the Opalinus Clay - a Jurassic (Aalenian) claystone formation - has been proposed as the first-priority host rock for a deep geological repository for both low- and intermediate-level and high-level radioactive wastes. An extensive site and host rock investigation programme has been carried out during the past 30 years in Northern Switzerland, comprising extensive 2D and 3D seismic surveys, a series of deep boreholes within and around potential geological siting regions, experiments in the international Mont Terri Rock Laboratory, compilations of data from Opalinus Clay in railway and motorway tunnels and comparisons with similar rocks. The hydrogeological properties of the Opalinus Clay that are relevant from the viewpoint of long-term safety are described and illustrated. The main conclusions are supported by multiple lines of evidence, demonstrating consistency of conclusions based on hydraulic properties, porewater chemistry, distribution of natural tracers across the Opalinus Clay as well as small- and large-scale diffusion models and the derived conceptual understanding of solute transport.

Direct visualization of clay microfabric signatures driving organic matter preservation in fine-grained sediment

NASA Astrophysics Data System (ADS)

Curry, Kenneth J.; Bennett, Richard H.; Mayer, Lawrence M.; Curry, Ann; Abril, Maritza; Biesiot, Patricia M.; Hulbert, Matthew H.

2007-04-01

We employed direct visualization of organic matter (OM) sequestered by microfabric signatures in organo-clay systems to study mechanisms of OM protection. We studied polysaccharides, an abundant class of OM in marine sediments, associated with the nano- and microfabric of clay sediment using a novel application of transmission electron microscopy, histochemical staining (periodic acid-thiosemicarbazide-silver proteinate), and enzymatic digestion techniques. We used two experimental organo-clay sediment environments. First, laboratory-consolidated sediment with 10% chitin (w/w) added was probed for chitin before and after digestion with chitinase. Second, fecal pellets from the polychaete Heteromastus filiformis were used as a natural environment rich in clay and polysaccharides. Sections of this material were probed with silver proteinate for polysaccharides before and after digestion with a mixture of enzymes (amylase, cellulase, chitinase, dextranase, and pectinase). In both environments, chitin or other polysaccharides were found within pores, bridging clay domains, and attached to clay surfaces in undigested samples. Digested samples showed chitin or polysaccharides more closely associated with clay surfaces and in small pores. Our results imply protective roles for both sorption to clay surfaces and encapsulation within clay microfabric signatures.

Regional Sediment Management Studies of Matagorda Ship Channel and Matagorda Bay System, Texas

DTIC Science & Technology

2013-08-01

types of sediment, as there is more silt and clay (cohesive) material in the Lavaca Bay and upper Matagorda Bay and sandy (non- cohesive) sediment in the...Sediment varies from silt to clay in the upper and mid bays and sandy material in the lower bay. 2.5 Dredging History The SWG maintains the deep...diameter  clay mineralogy  rate of deformation (shear rate)  percentage of organic material  water chemistry (especially pH, salinity, etc

Imaging Shallow Aquitard Breaches with P waves: Results from a Walk-away test and a Reflection Survey at two Sites in Memphis, Tennessee, USA

NASA Astrophysics Data System (ADS)

Ge, J.; Magnani, M.; Waldron, B. A.

2006-12-01

We present the results of two seismic reflection experiments conducted in the Great Memphis area in April and July 2006. The two experiments consisted in a walk-away test and in the acquisition of a 1 km seismic reflection profile. The acquisition of the seismic data is part of a larger effort aimed at imaging the lateral continuity of the Upper Claiborne confining clay that separates the Memphis aquifer, the region's primary drinking water source, from the upper unconfined aquifer and protects the drinking aquifer from exposure to potential contamination. During the walk-away test, four P-wave sources, a 7.5 kg sledge hammer, a 20 kg weight drop, a 12-gauge Buffalo gun, and a Minivibe source were tested at two sites with the goal of selecting the best P-wave seismic source and acquisition parameters for shallow reflection surveys. Boreholes nearby both sites encountered the Upper Claiborne unit at a depth ranging from 10 m to 40 m. One site is located within a 100-meter length of road median that can be considered an urban environment. The second site is located at Shelby Farms within the City of Memphis yet reflects a rural setting with minimal noise and no subsurface infrastructure. Performing identical walk-away tests at both sites, the results indicate that the energy source selection is site dependent. At the urban site, the energy generated by the weight drop source is more coherent and can be interpreted with more confidence on the recorded data. However the Shelby Farms site the 12-gauge shotgun produced the strongest recorded energy, the highest dominant frequency and the broadest frequency band (6- 110 Hz). Strong attenuations are observed at both sites with a much higher attenuation in the urban road median site, where the near surface materials consisted of gravels, sands, clays, and pebbles. For both sites, surface waves and refractions dominate the seismic recordings. Filtering and gain of the data revealed the presence of shallow reflections related to the targeted clay layer. Based on the results of the walk-away test and on additional supporting data such as water table measurements, neotectonic structural mapping and borehole data, the location for a 1 km long, north-south trending seismic reflection profile was chosen at Shelby Farms extending south to the Wolf River. Based on the walk-away testing the 12-gauge Buffalo gun was selected as the energy source, used to detonate a single 200 g black powder shell in a 0.6 m deep water filled hole with a 1 m source interval and a 0.25 m geophone interval. Preliminary analysis of the data indicates dominating surface waves and refractions. Upon filtering, consistent reflections can be observed. Correlation of reflections at the start of the seismic line to nearby boreholes evidenced the signature of the Upper Claiborne confining clay at a depth of 18 m.

Site Selection for Mars Exopaleontology in 2001

NASA Technical Reports Server (NTRS)

Farmer, Jack

1998-01-01

The microbial fossil record encompasses a wide range of information, including cellular remains, stromatolites, biofabrics, trace fossils, biominerals and chemofossils. The preservation of fossils is strongly influenced by the physical, chemical and biological factors of the environment which, acting together, ultimately determine the types of information that will be captured and retained in the rock record. The critical factor in assessing the suitability of a site for a microbial fossil record is the paleoenvironment. The reconstruction of ancient sedimentary environments usually requires the integration of a wide variety of geological information, including the shape, geometry and internal structure of sedimentary deposits, their mineralogy, and geochemistry. For Mars, much of our knowledge about past environments is based on orbital imaging of geomorphic features. This evidence provides an important context and starting point for site selection. However, our knowledge of the martian surface is quite limited, and a major goal of the upcoming exploration effort is to reconstruct the history of Martian volatiles, climate, and hydrology as a context for the exploration for past or present life. Mineralogical mapping from orbit will be an important key in this effort. In exploring for evidence of past life, terrestrial experience suggests that the long-term preservation of biological information as fossils occurs under a fairly narrow range of geological conditions that are well known to paleontologists (1). In detrital sedimentary systems, microbial fossilization is favored by rapid burial in fine-grained, clay-rich sediments. In chemical sedimentary systems, preservation is enhanced by rapid entombment in fine-grained chemical precipitates. For long term preservation, host rocks must be composed of stable minerals that resist chemical weathering, and which form an impermeable matrix and closed chemical system that can protect biosignatures from alteration during subsequent diagenetic change or metamorphism. In this context, host rocks composed of highly ordered, chemically-stable mineral phases, like silica (forming cherts) or phosphate (forming phosphorites), are especially favored. Such lithologies tend to have very long crustal residence times and (along with carbonates and shales), are the most common host rocks for the Precambrian microfossil record on Earth. If we assume that a subsurface hydrosphere has been present throughout martian history, then life could have originated there at any time, perhaps emerging at the surface periodically when climate changes, induced by external forcing or endogenous processes (e.g. volcanism), allowed liquid water to exist at the surface. The recent discovery of subsurface chemolithoautotrophic organisms which are capable of synthesizing organic substrates from C02 and H2 liberated from the aqueous weathering of basalt, is especially. relevant as a model for martian life. While a subsurface habitable zone may yet exist on Mars, access to such environments will likely require drilling to depths of several kilometers. Given the technological challenge of deep drilling, this is unlikely to occur prior to human missions. So, even if there is extant life on Mars today in subsurface habitats, it may be much easier to find its fossil counterparts in ancient deposits exposed at the surface. In exploring for a fossil record in subsurface environments on Mars there are several geological situations that may provide access to the appropriate materials. These include 1) ejecta from impact craters, 2) talus slopes, debris flows or alluvial fans developed below the walls of deep canyons, and 3) the deposits of outflood channels. Examples of aqueous mineral deposits of formed in subsurface environments that could harbor a microbial fossil record include such things as cements in detrital sedimentary rocks, low temperature diagenetic minerals deposited in veins, or filling vesicles in volcanic rocks, and hydrothermal deposits formed below the upper temperature limit for life (about 160 degrees C). There are many sites within the present latitudinal constraints for the 2001 mission (15 deg S to 30 deg N) that meet these requirements. But the practical problem with these kinds of deposits is that they tend to be disseminated, making up only a small percentage of a host rock. Even with mineralogical information provided by the Thermal Emission Spectrometer (TES) presently in orbit around Mars, predicting their occurrence ahead of time may be quite difficult. The deposits of surficial aqueous sedimentary systems are likely to provide the largest targets for site selection in 2001. Of these, the deposits of hydrothermal systems (subaerial and subaqueous thermal springs) have been discussed previously. It is likely that hydrothermal systems were widespread on Mars early in its history and a number of common geo-tectonic settings on Mars are likely to have hosted hydrothermal activity. Most of these are represented within the latitudinal constraints presently identified for 2001. However, the deposits of surface spring systems are likely to be difficult to find as well. On Earth, exposure areas for hydrothermal spring mounds are typically a few square kms, less than a single TES pixel. But such deposits may be quite abundant within some volcanic terrains, It is estimated, for example, that between 15-20% of the floor of Yellowstone caldera is covered by thermal spring deposits. In such abundances, subaerial sinters could well be detected by TES. Where exposed, the shallow subsurface portions of these systems may be quite a lot larger (perhaps tens of square kms), although (as noted above) mineralization may be finely disseminated in the basement rock, making remote detection more difficult. Paleolake Basins. There are a large number of potential paleolake basins on Mars (inclusive of impact craters and volcanic calderas) that have been previously identified using Viking images. Most of these lie in the southern highlands beyond the l5 deg S constraint for 2001. However, deposits of paleolakes may offer the largest and most easily identified exopaleontological targets from orbit. Based on a variety of arguments, some workers have suggested that there was once an ancient ocean on the northern plains, and some sites of interest (potential shoreline terraces) fall within the 30 deg N constraint. From a paleontological standpoint the most interesting places of this type are terminal paleolake basins which are likely to have been both saline and alkaline. Models by Schaefer suggest such environments could be widespread on Mars. The conditions in terminal lake basin settings favor widespread chemical sedimentation, an important condition for microbial fossilization. Important lithological targets for a microbial fossil record in terminal lake basins include spring-deposited carbonates, shoreline cements, a wide variety of evaporite minerals and fine-grained detrital sediments including shales, marls, and water-lain volcanic ash deposits. In developing a strategy to explore for ancient hydrothermal deposits on Mars, we can learn from the methods that have been developed by explorationists to explore for economic mineral deposits on Earth. Due to their simple mineralogy, hydrothermal deposits can often be detected using remote sensing methods. Common thermal spring mineral assemblages include silica, carbonate, and various metallic oxides and sulfides. But there are also a number of diagnostic silicate minerals, including clays, formed by the hydrothermal alteration of country rocks. These hydrothermal minerals have characteristic spectral signatures that could be detected from Mars orbit using high resolution infrared remote sensing methods. In playa lake settings, evaporite deposits often form a predictable "bull's eye" pattern with carbonates being deposited in marginal basin areas, and sulfates and halides occurring progressively mo re basinward. The floors of some impact craters on Mars, such as "White Rock" and Bequeral Crater (see Oxia Palus NE, Site 148), have floor deposits that could be evaporites, inclusive of carbonates. Evaporite minerals possess characteristic spectral signatures in the infrared and could similarly be identified from Mars orbit using high resolution remote sensing methods. Clearly, utilization of TES data will be important for optimizing site selection for Exopaleontology, and every effort should be made to benefit from that data before a final decision is made.

Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

PubMed

Kobayashi, Tohru; Koide, Osamu; Mori, Kozue; Shimamura, Shigeru; Matsuura, Takae; Miura, Takeshi; Takaki, Yoshihiro; Morono, Yuki; Nunoura, Takuro; Imachi, Hiroyuki; Inagaki, Fumio; Takai, Ken; Horikoshi, Koki

2008-07-01

"A meta-enzyme approach" is proposed as an ecological enzymatic method to explore the potential functions of microbial communities in extreme environments such as the deep marine subsurface. We evaluated a variety of extra-cellular enzyme activities of sediment slurries and isolates from a deep subseafloor sediment core. Using the new deep-sea drilling vessel "Chikyu", we obtained 365 m of core sediments that contained approximately 2% organic matter and considerable amounts of methane from offshore the Shimokita Peninsula in Japan at a water depth of 1,180 m. In the extra-sediment fraction of the slurry samples, phosphatase, esterase, and catalase activities were detected consistently throughout the core sediments down to the deepest slurry sample from 342.5 m below seafloor (mbsf). Detectable enzyme activities predicted the existence of a sizable population of viable aerobic microorganisms even in deep subseafloor habitats. The subsequent quantitative cultivation using solid media represented remarkably high numbers of aerobic, heterotrophic microbial populations (e.g., maximally 4.4x10(7) cells cm(-3) at 342.5 mbsf). Analysis of 16S rRNA gene sequences revealed that the predominant cultivated microbial components were affiliated with the genera Bacillus, Shewanella, Pseudoalteromonas, Halomonas, Pseudomonas, Paracoccus, Rhodococcus, Microbacterium, and Flexibacteracea. Many of the predominant and scarce isolates produced a variety of extra-cellular enzymes such as proteases, amylases, lipases, chitinases, phosphatases, and deoxyribonucleases. Our results indicate that microbes in the deep subseafloor environment off Shimokita are metabolically active and that the cultivable populations may have a great potential in biotechnology.

Pacific Northwest Laboratory annual report for 1992 to the DOE Office of Energy Research

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grove, L.K.

1993-03-01

The 1992 Annual Report from Pacific Northwest Laboratory (PNL) to the US Department of Energy (DOE) describes research in environment and health conducted during fiscal year 1992. This report consists of four volumes oriented to particular segments of the PNL program, describing research performed for the DOE Office of Health and Environmental Research in the Office of Energy Research. The parts of the 1992 Annual Report are: Biomedical Sciences; Environmental Sciences; Atmospheric Sciences; and Physical Sciences. This Report is Part II: Environmental Sciences. Included in this report are developments in Subsurface Science, Terrestrial Science, Laboratory-Directed Research and Development, Interactions withmore » Educational Institutions, Technology Transfer, Publications, and Presentations. The research is directed toward developing a fundamental understanding of subsurface and terrestrial systems as a basis for both managing these critical resources and addressing environmental problems such as environmental restoration and global change. The Technology Transfer section of this report describes a number of examples in which fundamental research is laying the groundwork for the technology needed to resolve important environmental problems. The Interactions with Educational Institutions section of the report illustrates the results of a long-term, proactive program to make PNL facilities available for university and preuniversity education and to involve educational institutions in research programs. The areas under investigation include the effect of geochemical and physical phenomena on the diversity and function of microorganisms in deep subsurface environments, ways to address subsurface heterogeneity, and ways to determine the key biochemical and physiological pathways (and DNA markers) that control nutrient, water, and energy dynamics in arid ecosystems and the response of these systems to disturbance and climatic change.« less

Pacific Northwest Laboratory annual report for 1992 to the DOE Office of Energy Research. Part 2, Environmental sciences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grove, L.K.; Wildung, R.E.

1993-03-01

The 1992 Annual Report from Pacific Northwest Laboratory (PNL) to the US Department of Energy (DOE) describes research in environment and health conducted during fiscal year 1992. This report consists of four volumes oriented to particular segments of the PNL program, describing research performed for the DOE Office of Health and Environmental Research in the Office of Energy Research. The parts of the 1992 Annual Report are: Biomedical Sciences; Environmental Sciences; Atmospheric Sciences; and Physical Sciences. This Report is Part 2: Environmental Sciences. Included in this report are developments in Subsurface Science, Terrestrial Science, Laboratory-Directed Research and Development, Interactions withmore » Educational Institutions, Technology Transfer, Publications, and Presentations. The research is directed toward developing a fundamental understanding of subsurface and terrestrial systems as a basis for both managing these critical resources and addressing environmental problems such as environmental restoration and global change. The Technology Transfer section of this report describes a number of examples in which fundamental research is laying the groundwork for the technology needed to resolve important environmental problems. The Interactions with Educational Institutions section of the report illustrates the results of a long-term, proactive program to make PNL facilities available for university and preuniversity education and to involve educational institutions in research programs. The areas under investigation include the effect of geochemical and physical phenomena on the diversity and function of microorganisms in deep subsurface environments, ways to address subsurface heterogeneity, and ways to determine the key biochemical and physiological pathways (and DNA markers) that control nutrient, water, and energy dynamics in arid ecosystems and the response of these systems to disturbance and climatic change.« less

Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments

PubMed Central

Martinez, Robert J.; Wu, Cindy H.; Beazley, Melanie J.; Andersen, Gary L.; Conrad, Mark E.; Hazen, Terry C.; Taillefert, Martial; Sobecky, Patricia A.

2014-01-01

Background Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. Methodology/Principal Findings Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC) Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P)] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P) and 20 day (G3P) amended treatments, maximum phosphate (PO4 3−) concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5) treatments and greatest with G3P (pH 6.8) treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%–50% and 3%–17% of total detected Archaea and Bacteria, respectively. Conclusions/Significance This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium, strategies that harness microbial phosphate metabolism to promote uranium phosphate precipitation could offer an alternative approach for in situ sequestration. PMID:24950228

Exploring the Deep Biosphere in Ophiolite-hosted Systems: What Can Metabolic Processes in Surface Seeps Tell Us About Subsurface Ecosystems in Serpentinizing Fluids?

NASA Astrophysics Data System (ADS)

Meyer-Dombard, D. R.; Cardace, D.; Woycheese, K. M.; Vallalar, B.; Casar, C.; Simon, A.; Arcilla, C. A.

2016-12-01

Serpentinization in the subsurface produces highly reduced, high pH fluids that provide microbial habitats. It is assumed that these deep subsurface fluids contain copious H2 and CH4 gas, little/no inorganic carbon, and limited electron acceptors. As serpentinized fluids reach the oxygenated surface environment, microbial biomes shift and organisms capable of metabolizing O2 thrive (Woycheese et al., 2015). However, the relationship of microbial communities found in surface expressions of serpentinizing fluids to the subsurface biosphere is still a target of exploration. Our work in the Zambales ophiolite (Philippines) defines surface microbial habitats with geochemistry, targeted culturing efforts, and community analysis (Cardace et al., 2015; Woycheese et al., 2015). Springs range from pH 9-11.5, and contain 0.06-2 ppm DO, 0-3.7 ppm sulfide, 30-800 ppm silica. Gases include H2 and CH4 > 10uM, CO2 > 1 mM, and trace amounts of CO. These surface data allow prediction of the subsurface metabolic landscape. For example, Cardace et al., (2015) predicted that metabolism of iron is important in both biospheres. Growth media were designed to target iron reduction yielding heterotrophic and autotrophic iron reducers at high pH. Reduced iron minerals were produced in several cultures (Casar et al., sub.), and isolation efforts are underway. Shotgun metagenomic analysis shows the metabolic capacity for methanogenesis, suggesting microbial origins for some CH4 present. The enzymes methyl coenzyme M reductase, and formylmethanofuran dehydrogenase were detected, and relative abundance increased near the near-anoxic spring source. The metagenomes indicate carbon cycling at these sites is reliant on methanogenesis, acetogenesis, sulfate reduction, and H2 and CH4 oxidation. In this tropical climate, cellulose is also a likely carbon source; cellulose degrading isolates have been obtained. These results indicate a metabolically flexible community at the surface where serpentinizing fluids are expressed. The next step is to understand what these surface systems might tell us about the subsurface biosphere. References: Cardace et al., 2015 Frontiers in Extreme Microbiology 6: doi: 10.3389/fmicb.2015.00010 Woycheese et al., 2015 Frontiers in Extreme Microbiology 6: doi: 10.3389/fmicb.2015.00044

Microbial DNA; a possible tracer of groundwater

NASA Astrophysics Data System (ADS)

Sugiyama, Ayumi; Segawa, Takuya; Furuta, Tsuyumi; Nagaosa, Kazuyo; Tsujimura, Maki; Kato, Kenji

2017-04-01

Though chemical analysis of groundwater shows an averaged value of chemistry of the examined water which was blended by various water with different sources and routes in subsurface environment, microbial DNA analysis may suggest the place where they originated, which may give information of the source and transport routes of the water examined. A huge amount of groundwater is stored in lava layer with maximum depth of 300m in Mt. Fuji (3,776m asl ), the largest volcanic mountain in Japan. Although the density of prokaryotes was low in the examined groundwater of Mt. Fuji, thermophilic prokaryotes as Thermoanaerobacterales, Gaiellales and Thermoplasmatales were significantly detected. They are optimally adapted to the temperature higher than 40oC. This finding suggests that at least some of the source of the examined groundwater was subsurface environment with 600m deep or greater, based on a temperature gradient of 4oC/100m and temperature of spring water ranges from 10 to 15oC in the foot of Mt. Fuji. This depth is far below the lava layer. Thus, the groundwater is not simply originated from the lava layer. In addition to those findings, we observed a very fast response of groundwater just a couple of weeks after the heavy rainfall exceeding 2 or 300 mm/event in Mt. Fuji. The fast response was suggested by a sharp increase in bacterial abundance in spring water located at 700m in height in the west foot of Mt. Fuji, where the average recharge elevation of groundwater was estimated to be 1,500m - 1,700m (Kato et. al. EGU 2016). This increase was mainly provided by soil bacteria as Burkholderiales, which might be detached from soil by strengthened subsurface flow caused by heavy rainfall. This suggests that heavy rainfall promotes shallow subsurface flow contributing to the discharge in addition to the groundwater in the deep aquifer. Microbial DNA, thus could give information about the route of the examined groundwater, which was never elucidated by analysis of chemical materials dissolved in groundwater. Though viral particle was employed as a tracer to chase the movement of groundwater, it doesn't tell the chemical and physical environmental condition where the particle was incorporated into groundwater. Thus, we propose microbial DNA as a new tracer to track the route of groundwater.

Roles of Nano- and Micro-Scale Subsurface Geochemical Reactions on Environmentally Sustainable Geologic Carbon Dioxide Sequestration

NASA Astrophysics Data System (ADS)

Hu, Yandi

Geologic CO2 sequestration (GCS) is a promising approach to reduce anthropogenic CO2 emissions into the atmosphere. At GCS sites, injected CO2 is kept in formation rock by an overlying low permeability caprock. During and after CO2 injection, geochemical reactions can affect the porosity, permeability, and pollutant transport in aquifers. Despite their importance, nano- and micro-scale subsurface geochemical reactions are far from well-understood. Clay mobilization has been reported to decrease aquifer permeability during water flooding, and clay minerals are abundant in caprock. Thus, we studied CO2-brine-clay interactions under varied conditions relevant to different GCS sites (at 35-95°C and under 35-120 atm CO2, in water, NaCl, MgCl2, or CaCl2 solutions). Biotite, Fe-bearing mica, was used as a model clay mineral. We observed numerous fibrous illite precipitates on mica after reaction for only 3 h, which had not been previously reported. A few hours later, the mica surface cracked and fibrous illite detached. The mobilization of fibrous illite can decrease the aquifer's permeability greatly and affect the safety and efficiency of GCS. Mechanisms related to ion exchange, mica swelling, and CO2 intercalation were explored. Oriented aggregation of illite nanoparticles forming the fibrous illite was directly observed, suggesting a new mechanism for fibrous illite formation. Interestingly, besides the pH effect, aqueous CO2 enhances mica cracking over N2. These findings can help to achieve safer subsurface operations. At GCS field sites, Fe concentration increased near the injection sites and originally adsorbed pollutants were released. As the brine flows, Fe re-precipitated because of pH increase. To better predict the fate and transport of aqueous pollutants, the nucleation and growth of Fe(III) (hydr)oxides were studied. New information about sizes and volumes of the Fe(III) (hydr)oxide nanoparticles precipitated in solution and on quartz, mica, and sapphire were provided using small angle X-ray scattering, in the presence of different ions (Al 3+, Cl-, NO3-, and SO 42-). Using complementary techniques, the controlling mechanisms related to surface charge, bond formation, and interfacial energies were explored. These new findings can help better predict pollutant transport in aquifers not only at GCS sites, but also in managed aquifer recharge and acid mine drainage sites.

Stochastic Approach to Determine CO2 Hydrate Induction Time in Clay Mineral Suspensions

NASA Astrophysics Data System (ADS)

Lee, K.; Lee, S.; Lee, W.

2008-12-01

A large number of induction time data for carbon dioxide hydrate formation were obtained from a batch reactor consisting of four independent reaction cells. Using resistance temperature detector(RTD)s and a digital microscope, we successfully monitored the whole process of hydrate formation (i.e., nucleation and crystal growth) and detected the induction time. The experiments were carried out in kaolinite and montmorillonite suspensions at temperatures between 274 and 277 K and pressures ranging from 3.0 to 4.0 MPa. Each set of data was analyzed beforehand whether to be treated by stochastic manner or not. Geochemical factors potentially influencing the hydrate induction time under different experimental conditions were investigated by stochastic analyses. We observed that clay mineral type, pressure, and temperature significantly affect the stochastic behavior of the induction times for CO2 hydrate formation in this study. The hydrate formation kinetics along with stochastic analyses can provide basic understanding for CO2 hydrate storage in deep-sea sediment and geologic formation, securing its stability under the environments.

Investigating the Potential Barrier Function of Nanostructured Materials Formed in Engineered Barrier Systems (EBS) Designed for Nuclear Waste Isolation.

PubMed

Cuevas, Jaime; Ruiz, Ana Isabel; Fernández, Raúl

2018-02-21

Clay and cement are known nano-colloids originating from natural processes or traditional materials technology. Currently, they are used together as part of the engineered barrier system (EBS) to isolate high-level nuclear waste (HLW) metallic containers in deep geological repositories (DGR). The EBS should prevent radionuclide (RN) migration into the biosphere until the canisters fail, which is not expected for approximately 10 3  years. The interactions of cementitious materials with bentonite swelling clay have been the scope of our research team at the Autonomous University of Madrid (UAM) with participation in several European Union (EU) projects from 1998 up to now. Here, we describe the mineral and chemical nature and microstructure of the alteration rim generated by the contact between concrete and bentonite. Its ability to buffer the surrounding chemical environment may have potential for further protection against RN migration. © 2018 The Chemical Society of Japan & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea).

PubMed

Wang, Yong; Li, Jiang Tao; He, Li Sheng; Yang, Bo; Gao, Zhao Ming; Cao, Hui Luo; Batang, Zenon; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan

2015-01-01

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin.

Deep Bore Storage of Nuclear Waste Using MMW (Millimeter Wave) Technology. Full Project Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oglesby, Kenneth D.; Woskov, Paul; Einstein, Herbert

This DOE Nuclear STTR project DE-SC001238 investigated the use of MMW directed energy to form rock melt and steel plugs in deep wellbores to further isolate highly radioactive nuclear waste in ultra-deep basement rocks for long term storage. This current project builds upon a prior DOE project, DE-EE0005504, which developed the basic low power, low 28 GHz frequency waveguide setup, process and instruments. This research adds to our understanding of using MMW power to melt and vaporize rocks and steel/ metals and laid plans for future higher power field prototype testing. This technology also has potential for deep well drillingmore » for nuclear storage, geothermal and oil and gas industries. It also has the potential for simultaneously sealing and securing the wellbore with a thick rock melt liner as the wellbore is drilled, called 'mono-bore drilling'. This allows for higher levels of safety and protection of the environment during deep drilling operations while providing vast cost savings. The larger purpose of this project was to find answers to key questions in developing MMW technology for its many subsurface applications.« less

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea)

PubMed Central

Wang, Yong; Li, Jiang Tao; He, Li Sheng; Yang, Bo; Gao, Zhao Ming; Cao, Hui Luo; Batang, Zenon; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan

2015-01-01

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin. PMID:26485717

Soil Physical Constraints on Intrinsic Biodegradation of Petroleum Vapors in a Layered Subsurface

PubMed Central

Kristensen, Andreas H.; Henriksen, Kaj; Mortensen, Lars; Scow, Kate M.; Moldrup, Per

2011-01-01

Naturally occurring biodegradation of petroleum hydrocarbons in the vadose zone depends on the physical soil environment influencing field-scale gas exchange and pore-scale microbial metabolism. In this study, we evaluated the effect of soil physical heterogeneity on biodegradation of petroleum vapors in a 16-m-deep, layered vadose zone. Soil slurry experiments (soil/water ratio 10:30 w/w, 25°C) on benzene biodegradation under aerobic and well-mixed conditions indicated that the biodegradation potential in different textured soil samples was related to soil type rather than depth, in the order: sandy loam > fine sand > limestone. Similarly, O2 consumption rates during in situ respiration tests performed at the site were higher in the sandy loam than in the fine sand, although the difference was less significant than in the slurries. Laboratory and field data generally agreed well and suggested a significant potential for aerobic biodegradation, even with nutrient-poor and deep subsurface conditions. In slurries of the sandy loam, the biodegradation potential declined with increasing in situ water saturation (i.e., decreasing air-filled porosity in the field). This showed a relation between antecedent undisturbed field conditions and the slurry biodegradation potential, and suggested airfilled porosity to be a key factor for the intrinsic biodegradation potential in the field. PMID:21617737

Use of groundwater lifetime expectancy for the performance assessment of a deep geologic waste repository: 1. Theory, illustrations, and implications

NASA Astrophysics Data System (ADS)

Cornaton, F. J.; Park, Y.-J.; Normani, S. D.; Sudicky, E. A.; Sykes, J. F.

2008-04-01

Long-term solutions for the disposal of toxic wastes usually involve isolation of the wastes in a deep subsurface geologic environment. In the case of spent nuclear fuel, if radionuclide leakage occurs from the engineered barrier, the geological medium represents the ultimate barrier that is relied upon to ensure safety. Consequently, an evaluation of radionuclide travel times from a repository to the biosphere is critically important in a performance assessment analysis. In this study, we develop a travel time framework based on the concept of groundwater lifetime expectancy as a safety indicator. Lifetime expectancy characterizes the time that radionuclides will spend in the subsurface after their release from the repository and prior to discharging into the biosphere. The probability density function of lifetime expectancy is computed throughout the host rock by solving the backward-in-time solute transport adjoint equation subject to a properly posed set of boundary conditions. It can then be used to define optimal repository locations. The risk associated with selected sites can be evaluated by simulating an appropriate contaminant release history. The utility of the method is illustrated by means of analytical and numerical examples, which focus on the effect of fracture networks on the uncertainty of evaluated lifetime expectancy.

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments

PubMed Central

Hernsdorf, Alex W; Amano, Yuki; Miyakawa, Kazuya; Ise, Kotaro; Suzuki, Yohey; Anantharaman, Karthik; Probst, Alexander; Burstein, David; Thomas, Brian C; Banfield, Jillian F

2017-01-01

Geological sequestration in deep underground repositories is the prevailing proposed route for radioactive waste disposal. After the disposal of radioactive waste in the subsurface, H2 may be produced by corrosion of steel and, ultimately, radionuclides will be exposed to the surrounding environment. To evaluate the potential for microbial activities to impact disposal systems, we explored the microbial community structure and metabolic functions of a sediment-hosted ecosystem at the Horonobe Underground Research Laboratory, Hokkaido, Japan. Overall, we found that the ecosystem hosted organisms from diverse lineages, including many from the phyla that lack isolated representatives. The majority of organisms can metabolize H2, often via oxidative [NiFe] hydrogenases or electron-bifurcating [FeFe] hydrogenases that enable ferredoxin-based pathways, including the ion motive Rnf complex. Many organisms implicated in H2 metabolism are also predicted to catalyze carbon, nitrogen, iron and sulfur transformations. Notably, iron-based metabolism is predicted in a novel lineage of Actinobacteria and in a putative methane-oxidizing ANME-2d archaeon. We infer an ecological model that links microorganisms to sediment-derived resources and predict potential impacts of microbial activity on H2 consumption and retardation of radionuclide migration. PMID:28350393

Hydraulic fracturing offers view of microbial life in the deep terrestrial subsurface.

PubMed

Mouser, Paula J; Borton, Mikayla; Darrah, Thomas H; Hartsock, Angela; Wrighton, Kelly C

2016-11-01

Horizontal drilling and hydraulic fracturing are increasingly used for recovering energy resources in black shales across the globe. Although newly drilled wells are providing access to rocks and fluids from kilometer depths to study the deep biosphere, we have much to learn about microbial ecology of shales before and after 'fracking'. Recent studies provide a framework for considering how engineering activities alter this rock-hosted ecosystem. We first provide data on the geochemical environment and microbial habitability in pristine shales. Next, we summarize data showing the same pattern across fractured shales: diverse assemblages of microbes are introduced into the subsurface, eventually converging to a low diversity, halotolerant, bacterial and archaeal community. Data we synthesized show that the shale microbial community predictably shifts in response to temporal changes in geochemistry, favoring conservation of key microorganisms regardless of inputs, shale location or operators. We identified factors that constrain diversity in the shale and inhibit biodegradation at the surface, including salinity, biocides, substrates and redox. Continued research in this engineered ecosystem is required to assess additive biodegradability, quantify infrastructure biocorrosion, treat wastewaters that return to the surface and potentially enhance energy production through in situ methanogenesis. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Biogeography of serpentinite-hosted microbial ecosystems

NASA Astrophysics Data System (ADS)

Brazelton, W.; Cardace, D.; Fruh-Green, G.; Lang, S. Q.; Lilley, M. D.; Morrill, P. L.; Szponar, N.; Twing, K. I.; Schrenk, M. O.

2012-12-01

Ultramafic rocks in the Earth's mantle represent a tremendous reservoir of carbon and reducing power. Upon tectonic uplift and exposure to fluid flow, serpentinization of these materials generates copious energy, sustains abiogenic synthesis of organic molecules, and releases hydrogen gas (H2). To date, however, the "serpentinite microbiome" is poorly constrained- almost nothing is known about the microbial diversity endemic to rocks actively undergoing serpentinization. Through the Census of Deep Life, we have obtained 16S rRNA gene pyrotag sequences from fluids and rocks from serpentinizing ophiolites in California, Canada, and Italy. The samples include high pH serpentinite springs, presumably representative of deeper environments within the ophiolite complex, wells which directly access subsurface aquifers, and rocks obtained from drill cores into serpentinites. These data represent a unique opportunity to examine biogeographic patterns among a restricted set of microbial taxa that are adapted to similar environmental conditions and are inhabiting sites with related geological histories. In general, our results point to potentially H2-utilizing Betaproteobacteria thriving in shallow, oxic-anoxic transition zones and anaerobic Clostridia thriving in anoxic, deep subsurface habitats. These general taxonomic and biogeochemical trends were also observed in seafloor Lost City hydrothermal chimneys, indicating that we are beginning to identify a core serpentinite microbial community that spans marine and continental settings.

Simulating pathways of subsurface oil in the Faroe-Shetland Channel using an ocean general circulation model.

PubMed

Main, C E; Yool, A; Holliday, N P; Popova, E E; Jones, D O B; Ruhl, H A

2017-01-15

Little is known about the fate of subsurface hydrocarbon plumes from deep-sea oil well blowouts and their effects on processes and communities. As deepwater drilling expands in the Faroe-Shetland Channel (FSC), oil well blowouts are a possibility, and the unusual ocean circulation of this region presents challenges to understanding possible subsurface oil pathways in the event of a spill. Here, an ocean general circulation model was used with a particle tracking algorithm to assess temporal variability of the oil-plume distribution from a deep-sea oil well blowout in the FSC. The drift of particles was first tracked for one year following release. Then, ambient model temperatures were used to simulate temperature-mediated biodegradation, truncating the trajectories of particles accordingly. Release depth of the modeled subsurface plumes affected both their direction of transport and distance travelled from their release location, and there was considerable interannual variability in transport. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Surface assessment of CaF2 deep-ultraviolet and vacuum-ultraviolet optical components by the quasi-Brewster angle technique.

PubMed

Wang, Jue; Maier, Robert L

2006-08-01

The requirements for optical components have drastically increased for the deep-ultraviolet and vacuum-ultraviolet spectral regions. Low optical loss, high laser damage threshold, and long lifetime fluoride optics are required for microlithographic applications. A nondestructive quasi-Brewster angle technique (qBAT) has been developed for evaluating the quality of optical surfaces including both top surface and subsurface information. By using effective medium approximation, the negative quasi-Brewster angle shift at wavelengths longer than 200 nm has been used to model the distribution of subsurface damage, whereas the positive quasi-Brewster angle shift for wavelengths shorter than 200 nm has been explained by subsurface contamination. The top surface roughness depicted by the qBAT is consistent with atomic force microscopy measurements. The depth and the microporous structure of the subsurface damage measured by the qBAT has been confirmed by magnetorheological finishing. The technique has been extended to evaluate both polished and antireflection-coated CaF(2) components.

Biofilm-induced calcium carbonate precipitation: application in the subsurface

NASA Astrophysics Data System (ADS)

Phillips, A. J.; Eldring, J.; Lauchnor, E.; Hiebert, R.; Gerlach, R.; Mitchell, A. C.; Esposito, R.; Cunningham, A. B.; Spangler, L.

2012-12-01

We have investigated mitigation strategies for sealing high permeability regions, like fractures, in the subsurface. This technology has the potential to, for example, improve the long-term security of geologically-stored carbon dioxide (CO2) by sealing fractures in cap rocks or to mitigate leakage pathways to prevent contamination of overlying aquifers from hydraulic fracturing fluids. Sealing technologies using low-viscosity fluids are advantageous since they potentially reduce the necessary injection pressures and increase the radius of influence around injection wells. In this technology, aqueous solutions and suspensions are used to promote microbially-induced mineral precipitation which can be applied in subsurface environments. To this end, a strategy was developed to twice seal a hydraulically fractured, 74 cm (2.4') diameter Boyles Sandstone core, collected in North-Central Alabama, with biofilm-induced calcium carbonate (CaCO3) precipitates under ambient pressures. Sporosarcina pasteurii biofilms were established and calcium and urea containing reagents were injected to promote saturation conditions favorable for CaCO3 precipitation followed by growth reagents to resuscitate the biofilm's ureolytic activity. Then, in order to evaluate this process at relevant deep subsurface pressures, a novel high pressure test vessel was developed to house the 74 cm diameter core under pressures as high as 96 bar (1,400 psi). After determining that no impact to the fracture permeability occurred due to increasing overburden pressure, the fractured core was sealed under subsurface relevant pressures relating to 457 meters (1,500 feet) below ground surface (44 bar (650 psi) overburden pressure). After fracture sealing under both ambient and subsurface relevant pressure conditions, the sandstone core withstood three times higher well bore pressure than during the initial fracturing event, which occurred prior to biofilm-induced CaCO3 mineralization. These studies suggest biofilm-induced CaCO3 precipitation technologies may potentially seal and strengthen high permeability regions or fractures (either natural or induced) in the subsurface. Novel high pressure test vessel to investigate biogeochemical processes under relevant subsurface scales and pressures.

Applications of Surface Penetrating Radar for Mars Exploration

NASA Astrophysics Data System (ADS)

Li, H.; Li, C.; Ran, S.; Feng, J.; Zuo, W.

2015-12-01

Surface Penetrating Radar (SPR) is a geophysical method that uses electromagnetic field probe the interior structure and lithological variations of a lossy dielectric materials, it performs quite well in dry, icy and shallow-soil environments. The first radar sounding of the subsurface of planet was carried out by Apollo Lunar Sounder Experiment (ALSE) of the Apollo 17 in 1972. ALSE provided very precise information about the moon's topography and revealed structures beneath the surface in both Mare Crisium and Mare Serenitatis. Russian Mars'92 was the first Mars exploration mission that tried to use SPR to explore martian surface, subsurface and ionosphere. Although Mars'96 launch failed in 1996, Russia(Mars'98, cancelled in 1998; Phobos-Grunt, launch failed in 2011), ESA(Mars Express, succeeded in 2003; Netlander, cancelled in 2003; ExoMars 2018) and NASA(MRO, succeeded in 2005; MARS 2020) have been making great effects to send SPR to Mars, trying to search for the existence of groundwater and life in the past 20 years. So far, no Ground Penetrating Radar(GPR) has yet provided in situ observations on the surface of Mars. In December 2013, China's CE-3 lunar rover (Yuto) equipped with a GPR made the first direct measurement of the structure and depth of the lunar soil, and investigation of the lunar crust structure along the rover path. China's Mars Exploration Program also plans to carry the orbiting radar sounder and rover GPR to characterize the nature of subsurface water or ices and the layered structure of shallow subsurface of Mars. SPR can provide diversity of applications for Mars exploration , that are: to map the distribution of solid and liquid water in the upper portions of the Mars' crust; to characterize the subsurface geologic environment; to investigate the planet's subsurface to better understand the evolution and habitability of Mars; to perform the martain ionosphere sounding. Based on SPR's history and achievements, combined with the development of radar technology, SPR's technological trends applied in moon and deep space exploration are summarized in the following: Technological convergence in SPR and SAR(Synthetic Aperture Radar); Muliti-frequency and Multi-polarization; Bistatic or multistatic SPRs for geophysical network; Tomography.

Clays and clay minerals in Bikaner: Sources, environment pollution and management

NASA Astrophysics Data System (ADS)

Gayatri, Sharma; Anu, Sharma

2016-05-01

Environmental pollution can also be caused by minerals which include natural as well as human activities. Rapid urbanization, consumerist life style, anthropogenic deeds are increasing environmental pollution day by day. Fluctuation in our ecosystem or polluted environment leads to many diseases and shows adverse effects on living organisms. The main aim of this paper is to highlight the environmental pollution from clays and clay minerals and their mitigation..

Analysis of Mineral Assemblages Containing Unstable Hydrous Phases

NASA Astrophysics Data System (ADS)

Vaniman, D. T.; Wilson, S. A.; Bish, D. L.; Chipera, S.

2011-12-01

Minerals in many environments can be treated as durable phases that preserve a record of their formation. However many minerals, especially those with hydrogen-bonded H2O molecules as part of their structure, are ephemeral and are unlikely to survive disturbance let alone removal from their environment of formation. Minerals with exceptionally limited stability such as meridianiite (Mg-sulfate 11 hydrate), ikaite (Ca-carbonate 6 hydrate), and mirabilite (Na-sulfate 10 hydrate) are very susceptible to destabilization during analysis, and even modest changes in temperature or relative humidity can lead to change in hydration state or deliquescence. The result may be not only loss of the salt hydrate but dissolution of other salts present, precipitation of new phases, and ion exchange between the concentrated solution and otherwise unaffected phases. Exchange of H2O molecules can also occur in solid-vapor systems without any liquid involvement; moreover, recent work has shown that cation exchange between smectite and sulfate hydrates can occur without any liquid phase present other than a presumed thin film at the salt-silicate interface. Among hydrous silicates, clay minerals are susceptible to cation exchange and similar alteration can be expected for zeolites, palagonite, and possibly other hydrous silicate alteration products. Environmentally sensitive phases on Mars, such as meridianiite, may occur at higher latitudes or in the subsurface where permafrost may be present. Accurate determination of the presence and paragenesis of such minerals will be important for understanding the near-surface hydrogeology of Mars, and in situ analysis may be the only way to obtain this information. Access to the subsurface may be required, yet the act of exposure by excavation or drilling can itself lead to rapid degradation as the sample is exposed or brought to the surface for analysis. Mars is not the only body with which to be concerned, for similar concerns can be raised for sampling cold-environment deposits at the lunar poles, at the poles of Mercury, on icy satellites, and on many other bodies that may host hydrous minerals. The problem of adequate in situ analysis of such mutable assemblages extends to Earth as well, for example in the need for improved understanding of polar and permafrost regions, deep sea clathrates, cave minerals, and mine dump efflorescence. Advanced methods of in situ analysis are needed, including but not limited to contact instruments and instrumentation that can be inserted by probe or operated within a borehole that could be advanced with minimal thermal disturbance. One of the lessons of robotic analysis is that field instruments, which by necessity are less capable than laboratory equivalents, provide greatly improved interpretations if data from several different instruments can be compared.

Teapots with a Twist

ERIC Educational Resources Information Center

Skophammer, Karen

2012-01-01

The earliest teapots are known for their fine clay texture and thin walls. They were made from purple clay that had a natural color anywhere from light buff to deep maroon once fired. In the 1970s, novelty teapots were being made, with the vessels resembling animals and people. In these humorous designs, the tea was poured from the animals' noses…

Effective diffusion coefficients of DNAPL waste components in saturated low permeability soil materials

NASA Astrophysics Data System (ADS)

Ayral-Cinar, Derya; Demond, Avery H.

2017-12-01

Diffusion is regarded as the dominant transport mechanism into and out of low permeable subsurface lenses and layers in the subsurface. But, some reports of mass storage in such zones are higher than what might be attributable to diffusion, based on estimated diffusion coefficients. Despite the importance of diffusion to efforts to estimate the quantity of residual contamination in the subsurface, relatively few studies present measured diffusion coefficients of organic solutes in saturated low permeability soils. This study reports the diffusion coefficients of a trichloroethylene (TCE), and an anionic surfactant, Aerosol OT (AOT), in water-saturated silt and a silt-montmorillonite (25:75) mixture, obtained using steady-state experiments. The relative diffusivity ranged from 0.11 to 0.17 for all three compounds for the silt and the silt-clay mixture that was allowed to expand. In the case in which the swelling was constrained, the relative diffusivity was about 0.07. In addition, the relative diffusivity of 13C-labeled TCE through a water saturated silt-clay mixture that had contacted a field dense non-aqueous phase liquid (DNAPL) for 18 months was measured and equaled 0.001. These experimental results were compared with the estimates generated using common correlations, and it was found that, in all cases, the measured diffusion coefficients were significantly lower than the estimated. Thus, the discrepancy between mass accumulations observed in the field and the mass storage that can attributable to diffusion may be greater than previously believed.

Regional biostratigraphy and paleoenvironmental history of Miocene of onshore and offshore Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, C.C.

1989-09-01

Subsurface Miocene sediments of coastal Alabama and the adjoining state and federal waters consist of a clastic wedge varying in thickness from less than 1,000 ft in southern Alabama to a maximum of about 6,000 ft in the northeastern portion of the Main Pass area. Relatively deep-water and open-marine transgressive basal Miocene clays and shales unconformably overlie a gently southwestward-dipping late Oligocene-earliest Miocene carbonate platform. Middle and late Miocene sediments consist of a regressive offlapping sequence of sand and shale deposited in varying neritic paleoenvironments. Analysis of planktonic and benthonic foraminifera has resulted in a refined biostratigraphic zonation of thesemore » sediments, permitting the recognition of several regional time-equivalent datum levels, or biohorizons. These biohorizons are shown on a series of subsurface cross sections that show the dramatic southwestward thickening of middle and late Miocene sediments as well as illustrate the relationships of the producing intervals within the Cibicides carstensi and Discorbis 12 interval zones. The paleoenvironmental history of the Miocene has been reconstructed on a series of paleobathymetric maps drawn for selected regional biohorizons. Among other features, these maps have proven the existence and outlined the margins of previously unrecognized shallow-meritic deltaic sediments in southeastern Mobile County and in the Chandeleur and Viosca Knoll (north) areas. Analysis of sedimentation rates, which range from less than 25 to 1,370 ft/m.y., further aids in understanding the coastal shelf, deltaic, and open-marine depositional history of the Miocene of Alabama and the adjoining state and federal waters.« less

Biofilm development in a hotspot of mixing between shallow and deep groundwater in a fractured aquifer: field evidence from joint flow, chemical and microbiological measurements

NASA Astrophysics Data System (ADS)

Bochet, O.; Dufresne, A.; Pédrot, M.; Chatton, E.; Labasque, T.; Ben Maamar, S.; Burté, L.; de la Bernardie, J.; Guihéneuf, N.; Lavenant, N.; Petton, C.; Bour, O.; Aquilina, L.; Le Borgne, T.

2015-12-01

Biofilms play a major role in controlling the fluxes and reactivity of chemical species transported in hydro-logical systems. Micro-organisms require both electron donors and electron acceptors for cellular growth, proliferation and maintenance of their metabolic functions. The mechanisms controlling these reactions derive from the interactions occurring at the micro-scale that depend on mineral compositions, the biota of subsurface environment, but also fluid mixing, which determines the local concentrations of nutriments, electron donors and electron acceptors. Hence, mixing zones between oxygen and nutriment rich shallow groundwater and mineralized deep groundwater are often considered as potential hotspots of microbial activity, although relatively few field data document flow distributions, transport properties, chemical gradients and micro-organisms distributions across these mixing interfaces. Here we investigate the origin of a localized biofilm development observed in the fractured granite aquifer at the Ploemeur observatory (H+ network hplus.ore.fr).This biofilm composed of ferro-oxidizing bacteria is observed in an 130m deep artesian well. Borehole video logs show an important colonization of the well by the biofilm in the shallower part (0 to 60m), while it is inexistent in the deeper part (60 to 130m). As flow is localized in a few deep and shallow fractures, we presume that the spatial distribution of biofilm is controlled by mixing between shallow and deep groundwater. To verify this hypothesis we conducted a field campaign with joint characterization of the flow and chemical composition of water flowing from the different fractures, as well as the microbiological composition of the biofilm at different depth, using pyrosequencing techniques. We will discuss in this presentation the results of this interdisciplinary dataset and their implications for the occurrence of hotspots of microbiological activity in the subsurface.

Data on subsurface storage of liquid waste near Pensacola, Florida, 1963-1980

USGS Publications Warehouse

Hull, R.W.; Martin, J.B.

1982-01-01

Since 1963, when industrial waste was first injected into the subsurface in northwest Florida, considerable data have been collected relating to the geochemistry of subsurface waste storage. This report presents hydrogeologic data on two subsurface waste storage. This report presents hydrogeologic data on two subsurface storage systems near Pensacola, Fla., which inject liquid industrial waste through deep wells into a saline aquifer. Injection sites are described giving a history of well construction, injection, and testing; geologic data from cores and grab samples; hydrographs of injection rates, volume, pressure, and water levels; and chemical and physical data from water-quality samples collected from injection and monitor wells. (USGS)

Sample Return from Ancient Hydrothermal Springs

NASA Technical Reports Server (NTRS)

Allen, Carlton C.; Oehler, Dorothy Z.

2008-01-01

Hydrothermal spring deposits on Mars would make excellent candidates for sample return. Molecular phylogeny suggests that that life on Earth may have arisen in hydrothermal settings [1-3], and on Mars, such settings not only would have supplied energy-rich waters in which martian life may have evolved [4-7] but also would have provided warm, liquid water to martian life forms as the climate became colder and drier [8]. Since silica, sulfates, and clays associated with hydrothermal settings are known to preserve geochemical and morphological remains of ancient terrestrial life [9-11], such settings on Mars might similarly preserve evidence of martian life. Finally, because formation of hydrothermal springs includes surface and subsurface processes, martian spring deposits would offer the potential to assess astrobiological potential and hydrological history in a variety of settings, including surface mineralized terraces, associated stream deposits, and subsurface environments where organic remains may have been well protected from oxidation. Previous attempts to identify martian spring deposits from orbit have been general or limited by resolution of available data [12-14]. However, new satellite imagery from HiRISE has a resolution of 28 cm/pixel, and based on these new data, we have interpreted several features in Vernal Crater, Arabia Terra as ancient hydrothermal springs [15, 16].

Multisensor on-the-go mapping of readily dispersible clay, particle size and soil organic matter

NASA Astrophysics Data System (ADS)

Debaene, Guillaume; Niedźwiecki, Jacek; Papierowska, Ewa

2016-04-01

Particle size fractions affect strongly the physical and chemical properties of soil. Readily dispersible clay (RDC) is the part of the clay fraction in soils that is easily or potentially dispersible in water when small amounts of mechanical energy are applied to soil. The amount of RDC in the soil is of significant importance for agriculture and environment because clay dispersion is a cause of poor soil stability in water which in turn contributes to soil erodibility, mud flows, and cementation. To obtain a detailed map of soil texture, many samples are needed. Moreover, RDC determination is time consuming. The use of a mobile visible and near-infrared (VIS-NIR) platform is proposed here to map those soil properties and obtain the first detailed map of RDC at field level. Soil properties prediction was based on calibration model developed with 10 representative samples selected by a fuzzy logic algorithm. Calibration samples were analysed for soil texture (clay, silt and sand), RDC and soil organic carbon (SOC) using conventional wet chemistry analysis. Moreover, the Veris mobile sensor platform is also collecting electrical conductivity (EC) data (deep and shallow), and soil temperature. These auxiliary data were combined with VIS-NIR measurement (data fusion) to improve prediction results. EC maps were also produced to help understanding RDC data. The resulting maps were visually compared with an orthophotography of the field taken at the beginning of the plant growing season. Models were developed with partial least square regression (PLSR) and support vector machine regression (SVMR). There were no significant differences between calibration using PLSR or SVMR. Nevertheless, the best models were obtained with PLSR and standard normal variate (SNV) pretreatment and the fusion with deep EC data (e.g. for RDC and clay content: RMSECV = 0,35% and R2 = 0,71; RMSECV = 0,32% and R2 = 0,73 respectively). The best models were used to predict soil properties from the field spectra collected with the VIS-NIR platform. Maps of soil properties were generated using natural neighbour (NN) interpolation. Calibration results were satisfactory for all soil properties and allowed for the generation of detailed maps. The spatial variability of RDC was in accordance with the field orthophotography. Areas of high RDC content were corresponding to area of bad plant development. Soil texture has been correctly predicted by VIS-NIR spectroscopy (laboratory or on-the-go) before. However, readily dispersible clay (an important parameter for soil stability) has never been investigated before. This study introduces the possibility of using VIS-NIR for predicting readily dispersible clay at field level. The results obtained could be used in preventing soil erosion. Acknowledgement: This research was financed by a National Science Centre grant (NCN - Poland) with decision number UMO-2012/07/B/ST10/04387

SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 STORAGE

EPA Science Inventory

The paper discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of the...

SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 SEQUESTRATION

EPA Science Inventory

The chapter discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of t...

Percolation induced heat transfer in deep unsaturated zones

USGS Publications Warehouse

Lu, N.; LeCain, G.D.

2003-01-01

Subsurface temperature data from a borehole located in a desert wash were measured and used to delineate the conductive and advective heat transfer regimes, and to estimate the percolation quantity associated with the 1997-1998 El Ni??no precipitation. In an arid environment, conductive heat transfer dominates the variation of shallow subsurface temperature most of the time, except during sporadic precipitation periods. The subsurface time-varying temperature due to conductive heat transfer is highly correlated with the surface atmospheric temperature variation, whereas temperature variation due to advective heat transfer is strongly correlated with precipitation events. The advective heat transfer associated with precipitation and infiltration is the focus of this paper. Disruptions of the subsurface conductive temperature regime, associated with the 1997-1998 El Ni??no precipitation, were detected and used to quantify the percolation quantity. Modeling synthesis using a one-dimensional coupled heat and unsaturated flow model indicated that a percolation per unit area of 0.7 to 1.3 m height of water in two weeks during February 1998 was responsible for the observed temperature deviations down to a depth of 35.2 m. The reported study demonstrated quantitatively, for the first time, that the near surface temperature variation due to advective heat transfer can be significant at a depth greater than 10 m in unsaturated soils and can be used to infer the percolation amount in thick unsaturated soils.

Field testing of stiffened deep cement mixing piles under lateral cyclic loading

NASA Astrophysics Data System (ADS)

Raongjant, Werasak; Jing, Meng

2013-06-01

Construction of seaside and underground wall bracing often uses stiffened deep cement mixed columns (SDCM). This research investigates methods used to improve the level of bearing capacity of these SDCM when subjected to cyclic lateral loading via various types of stiffer cores. Eight piles, two deep cement mixed piles and six stiffened deep cement mixing piles with three different types of cores, H shape cross section prestressed concrete, steel pipe, and H-beam steel, were embedded though soft clay into medium-hard clay on site in Thailand. Cyclic horizontal loading was gradually applied until pile failure and the hysteresis loops of lateral load vs. lateral deformation were recorded. The lateral carrying capacities of the SDCM piles with an H-beam steel core increased by 3-4 times that of the DCM piles. This field research clearly shows that using H-beam steel as a stiffer core for SDCM piles is the best method to improve its lateral carrying capacity, ductility and energy dissipation capacity.

Generic Argillite/Shale Disposal Reference Case

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Liange; Colon, Carlos Jové; Bianchi, Marco

Radioactive waste disposal in a deep subsurface repository hosted in clay/shale/argillite is a subject of widespread interest given the desirable isolation properties, geochemically reduced conditions, and widespread geologic occurrence of this rock type (Hansen 2010; Bianchi et al. 2013). Bianchi et al. (2013) provides a description of diffusion in a clay-hosted repository based on single-phase flow and full saturation using parametric data from documented studies in Europe (e.g., ANDRA 2005). The predominance of diffusive transport and sorption phenomena in this clay media are key attributes to impede radionuclide mobility making clay rock formations target sites for disposal of high-level radioactivemore » waste. The reports by Hansen et al. (2010) and those from numerous studies in clay-hosted underground research laboratories (URLs) in Belgium, France and Switzerland outline the extensive scientific knowledge obtained to assess long-term clay/shale/argillite repository isolation performance of nuclear waste. In the past several years under the UFDC, various kinds of models have been developed for argillite repository to demonstrate the model capability, understand the spatial and temporal alteration of the repository, and evaluate different scenarios. These models include the coupled Thermal-Hydrological-Mechanical (THM) and Thermal-Hydrological-Mechanical-Chemical (THMC) models (e.g. Liu et al. 2013; Rutqvist et al. 2014a, Zheng et al. 2014a) that focus on THMC processes in the Engineered Barrier System (EBS) bentonite and argillite host hock, the large scale hydrogeologic model (Bianchi et al. 2014) that investigates the hydraulic connection between an emplacement drift and surrounding hydrogeological units, and Disposal Systems Evaluation Framework (DSEF) models (Greenberg et al. 2013) that evaluate thermal evolution in the host rock approximated as a thermal conduction process to facilitate the analysis of design options. However, the assumptions and the properties (parameters) used in these models are different, which not only make inter-model comparisons difficult, but also compromise the applicability of the lessons learned from one model to another model. The establishment of a reference case would therefore be helpful to set up a baseline for model development. A generic salt repository reference case was developed in Freeze et al. (2013) and the generic argillite repository reference case is presented in this report. The definition of a reference case requires the characterization of the waste inventory, waste form, waste package, repository layout, EBS backfill, host rock, and biosphere. This report mainly documents the processes in EBS bentonite and host rock that are potentially important for performance assessment and properties that are needed to describe these processes, with brief description other components such as waste inventory, waste form, waste package, repository layout, aquifer, and biosphere. A thorough description of the generic argillite repository reference case will be given in Jové Colon et al. (2014).« less

Evidence of ancient alteration and subaqueous activity in Oxia Planum, the candidate landing site for Exomars 2020

NASA Astrophysics Data System (ADS)

Quantin-Nataf, Cathy; Carter, John; Thollot, Patrick; Loizeau, Damien; Davis, Joel; Grindrod, Peter; lozach, Loic

2017-04-01

The ExoMars 2018 mission (ESA) has for scientific objectives to search for signs of past and present life on Mars, to investigate the water/geochemical environment as a function of depth in the shallow subsurface, to study to Martian atmospheric trace gases and to characterize the surface environment. The landing site has to be relevant with regard to these objectives while fitting the restrictive engineering constrains. From the scientific point of view, the site must be ancient, from the Early Mars period, for which many scientific evidences favor the existence of a water-related cycle. In this paper, we present the unique location called Oxia Planum, a wide clay bearing plain located between 16° and 19° North and -23° to -28° East proposed as landing site for Exomars 2020 mission. Oxia Planum is located between Ares Vallis and Marwth Vallis in a wide basin just at the outlet of Cogoon Vallis System, with elevations ranging from -2800 m down to -3100 m. The regional compositional mapping of Oxia planum has been achieved based on OMEGA data at 2.5 km/pix well as CRISM multispectral data at 200 m/pix. Mg/Fe phyllosilicates, identified and mapped based on their diagnostic absorptions at 1.4, 1.9 and 2.3 µm are exposed over about 80% of the ellipse surface. The entire unit with phyllosilicates signatures corresponds to a light-toned layered unit that is observed over a large range of elevations (from -2600 m to -3100m) suggesting that like in Marwth Vallis region, the layered and altered formation overlaps a pre-existing topography . The age returned from crater count on the clay rich formation is 3.9 Ga. At the top or embedded within the layered formation, several fluvial morphologies such as former valleys or inverted channels are observed. Also, at the top of the layered clay-rich formation, a deltaic deposit is observed suggesting sub-aqueous episodes postdating the altered layered formation. In terms of mineralogy, the putative delta fan shows layers enriched in hydrated silica. This delta fan implies a second and distinct period of alteration in Oxia Planum signed by a distinct mineralogy. In term of age, the delta has a too small surface to allow a confident age assignment from crater count. We can only state that the delta-fan is older than 3.5 Ga. Oxia Planum recorded at least two clearly distinct alteration environments and contexts: 1) the alteration of the Noachian layers and 2) the fluvio-deltaic system post-dating the Noachian clay rich unit. Deciphering the formation environments for such diverse altered rocks would fulfill the goals of the ExoMars Rover.

Results from Field Testing the RIMFAX GPR on Svalbard.

NASA Astrophysics Data System (ADS)

Hamran, S. E.; Amundsen, H. E. F.; Berger, T.; Carter, L. M.; Dypvik, H.; Ghent, R. R.; Kohler, J.; Mellon, M. T.; Nunes, D. C.; Paige, D. A.; Plettemeier, D.; Russell, P.

2017-12-01

The Radar Imager for Mars' Subsurface Experiment - RIMFAX is a Ground Penetrating Radar being developed for NASÁs MARS 2020 rover mission. The principal goals of the RIMFAX investigation are to image subsurface structures, provide context for sample sites, derive information regarding subsurface composition, and search for ice or brines. In meeting these goals, RIMFAX will provide a view of the stratigraphic section and a window into the geological and environmental history of Mars. To verify the design an Engineering Model (EM) of the radar was tested in the field in the spring 2017. Different sounding modes on the EM were tested in different types of subsurface geology on Svalbard. Deep soundings were performed on polythermal glaciers down to a couple of hundred meters. Shallow soundings were used to map a ground water table in the firn area of a glacier. A combination of deep and shallow soundings was used to image buried ice under a sedimentary layer of a couple of meters. Subsurface sedimentary layers were imaged down to more than 20 meters in sand stone permafrost. This presentation will give an overview of the RIMFAX investigation, describe the development of the radar system, and show results from field tests of the radar.

Seismic Velocities Contain Information About Depth, Lithology, Fluid Content, and Microstructure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berge, P A; Bonner, B P

2002-01-03

Recent advances in field and laboratory methods for measuring elastic wave velocities provide incentive and opportunity for improving interpretation of geophysical data for engineering and environmental applications. Advancing the state-of-the-art of seismic imaging requires developing petrophysical relationships between measured velocities and the hydrogeology parameters and lithology. Our approach uses laboratory data and rock physics methods. Compressional (Vp) and shear (Vs) wave velocities, Vp/Vs ratios, and relative wave amplitudes show systematic changes related to composition, saturation, applied stress (analogous to depth), and distribution of clay for laboratory ultrasonic measurements on soils. The artificial soils were mixtures of Ottawa sand and amore » second phase, either Wyoming bentonite or peat moss used to represent clay or organic components found in natural soils. Compressional and shear wave velocities were measured for dry, saturated, and partially-saturated conditions, for applied stresses between about 7 and 100 kPa, representing approximately the top 5 m of the subsurface. Analysis of the results using rock physics methods shows the link between microstructure and wave propagation, and implications for future advances in seismic data interpretation. For example, we found that Vp in dry sand-clay mixtures initially increases as clay cements the sand grains and fills porosity, but then Vp decreases when the clay content is high enough that the clay matrix controls the elastic response of the material. Vs decreases monotonically with increasing clay content. This provides a method for using Vp/Vs ratios to estimate clay content in a dry soil.« less

Tc(VII) and Cr(VI) Interaction with Naturally Reduced Ferruginous Smectite from a Redox Transition Zone.

PubMed

Qafoku, Odeta; Pearce, Carolyn I; Neumann, Anke; Kovarik, Libor; Zhu, Mengqiang; Ilton, Eugene S; Bowden, Mark E; Resch, Charles T; Arey, Bruce W; Arenholz, Elke; Felmy, Andrew R; Rosso, Kevin M

2017-08-15

Fe(II)-rich clay minerals found in subsurface redox transition zones (RTZs) can serve as important sources of electron equivalents limiting the transport of redox-active contaminants. While most laboratory reactivity studies are based on reduced model clays, the reactivity of naturally reduced field samples remains poorly explored. Characterization of the clay size fraction of a fine-grained unit from the RTZ interface at the Hanford site, Washington, including mineralogy, crystal chemistry, and Fe(II)/(III) content, indicates that ferruginous montmorillonite is the dominant mineralogical component. Oxic and anoxic fractions differ significantly in Fe(II) natural content, but Fe TOTAL remains constant, demonstrating no Fe loss during its reduction-oxidation cyclings. At native pH of 8.6, the anoxic fraction, despite its significant Fe(II), ∼23% of Fe TOTAL , exhibits minimal reactivity with TcO 4 - and CrO 4 2- and much slower reaction kinetics than those measured in studies with biologically/chemically reduced model clays. Reduction capacity is enhanced by added/sorbed Fe(II) (if Fe(II) SORBED > 8% clay Fe(II) LABILE ); however, the kinetics of this conceptually surface-mediated reaction remain sluggish. Surface-sensitive Fe L-edge X-ray absorption spectroscopy shows that Fe(II) SORBED and the resulting reducing equivalents are not available in the outermost few nanometers of clay surfaces. Slow kinetics thus appear related to diffusion-limited access to electron equivalents retained within the clay mineral structure.

Influence of acidic and alkaline waste solution properties on uranium migration in subsurface sediments.

PubMed

Szecsody, Jim E; Truex, Mike J; Qafoku, Nikolla P; Wellman, Dawn M; Resch, Tom; Zhong, Lirong

2013-08-01

This study shows that acidic and alkaline wastes co-disposed with uranium into subsurface sediments have significant impact on changes in uranium retardation, concentration, and mass during downward migration. For uranium co-disposal with acidic wastes, significant rapid (i.e., hours) carbonate and slow (i.e., 100 s of hours) clay dissolution resulted, releasing significant sediment-associated uranium, but the extent of uranium release and mobility change was controlled by the acid mass added relative to the sediment proton adsorption capacity. Mineral dissolution in acidic solutions (pH2) resulted in a rapid (<10 h) increase in aqueous carbonate (with Ca(2+), Mg(2+)) and phosphate and a slow (100 s of hours) increase in silica, Al(3+), and K(+), likely from 2:1 clay dissolution. Infiltration of uranium with a strong acid resulted in significant shallow uranium mineral dissolution and deeper uranium precipitation (likely as phosphates and carbonates) with downward uranium migration of three times greater mass at a faster velocity relative to uranium infiltration in pH neutral groundwater. In contrast, mineral dissolution in an alkaline environment (pH13) resulted in a rapid (<10h) increase in carbonate, followed by a slow (10 s to 100 s of hours) increase in silica concentration, likely from montmorillonite, muscovite, and kaolinite dissolution. Infiltration of uranium with a strong base resulted in not only uranium-silicate precipitation (presumed Na-boltwoodite) but also desorption of natural uranium on the sediment due to the high ionic strength solution, or 60% greater mass with greater retardation compared with groundwater. Overall, these results show that acidic or alkaline co-contaminant disposal with uranium can result in complex depth- and time-dependent changes in uranium dissolution/precipitation reactions and uranium sorption, which alter the uranium migration mass, concentration, and velocity. Copyright © 2013 Elsevier B.V. All rights reserved.

The UK Centre for Astrobiology: A Virtual Astrobiology Centre. Accomplishments and Lessons Learned, 2011-2016.

PubMed

Cockell, Charles S; Biller, Beth; Bryce, Casey; Cousins, Claire; Direito, Susana; Forgan, Duncan; Fox-Powell, Mark; Harrison, Jesse; Landenmark, Hanna; Nixon, Sophie; Payler, Samuel J; Rice, Ken; Samuels, Toby; Schwendner, Petra; Stevens, Adam; Nicholson, Natasha; Wadsworth, Jennifer

2018-02-01

The UK Centre for Astrobiology (UKCA) was set up in 2011 as a virtual center to contribute to astrobiology research, education, and outreach. After 5 years, we describe this center and its work in each of these areas. Its research has focused on studying life in extreme environments, the limits of life on Earth, and implications for habitability elsewhere. Among its research infrastructure projects, UKCA has assembled an underground astrobiology laboratory that has hosted a deep subsurface planetary analog program, and it has developed new flow-through systems to study extraterrestrial aqueous environments. UKCA has used this research backdrop to develop education programs in astrobiology, including a massive open online course in astrobiology that has attracted over 120,000 students, a teacher training program, and an initiative to take astrobiology into prisons. In this paper, we review these activities and others with a particular focus on providing lessons to others who may consider setting up an astrobiology center, institute, or science facility. We discuss experience in integrating astrobiology research into teaching and education activities. Key Words: Astrobiology-Centre-Education-Subsurface-Analog research. Astrobiology 18, 224-243.

A data driven model for the impact of IFT and density variations on CO2 sequestration in porous media

NASA Astrophysics Data System (ADS)

Nomeli, Mohammad; Riaz, Amir

2017-11-01

CO2 storage in geological formations is one of the most promising solutions for mitigating the amount of greenhouse gases released into the atmosphere. One of the important issues for CO2 storage in subsurface environments is the sealing efficiency of low-permeable cap-rocks overlying potential CO2 storage reservoirs. A novel model is proposed to find the IFT of the systems (CO2/brine-salt) in a range of temperatures (300-373 K), pressures (50-250 bar), and up to 6 molal salinity applicable to CO2 storage in geological formations through a machine learning-assisted modeling of experimental data. The IFT between mineral surfaces and CO2/brine-salt solutions determines the efficiency of enhanced oil or gas recovery operations as well as our ability to inject and store CO2 in geological formations. Finally, we use the new model to evaluate the effects of formation depth on the actual efficiency of CO2 storage. The results indicate that, in the case of CO2 storage in deep subsurface environments as a global-warming mitigation strategy, CO2 storage capacity are improved with reservoir depth.

Subsurface imaging of water electrical conductivity, hydraulic permeability and lithology at contaminated sites by induced polarization

NASA Astrophysics Data System (ADS)

Maurya, P. K.; Balbarini, N.; Møller, I.; Rønde, V.; Christiansen, A. V.; Bjerg, P. L.; Auken, E.; Fiandaca, G.

2018-05-01

At contaminated sites, knowledge about geology and hydraulic properties of the subsurface and extent of the contamination is needed for assessing the risk and for designing potential site remediation. In this study, we have developed a new approach for characterizing contaminated sites through time-domain spectral induced polarization. The new approach is based on: (1) spectral inversion of the induced polarization data through a reparametrization of the Cole-Cole model, which disentangles the electrolytic bulk conductivity from the surface conductivity for delineating the contamination plume; (2) estimation of hydraulic permeability directly from the inverted parameters using a laboratory-derived empirical equation without any calibration; (3) the use of the geophysical imaging results for supporting the geological modelling and planning of drilling campaigns. The new approach was tested on a data set from the Grindsted stream (Denmark), where contaminated groundwater from a factory site discharges to the stream. Two overlapping areas were covered with seven parallel 2-D profiles each, one large area of 410 m × 90 m (5 m electrode spacing) and one detailed area of 126 m × 42 m (2 m electrode spacing). The geophysical results were complemented and validated by an extensive set of hydrologic and geologic information, including 94 estimates of hydraulic permeability obtained from slug tests and grain size analyses, 89 measurements of water electrical conductivity in groundwater, and four geological logs. On average the IP-derived and measured permeability values agreed within one order of magnitude, except for those close to boundaries between lithological layers (e.g. between sand and clay), where mismatches occurred due to the lack of vertical resolution in the geophysical imaging. An average formation factor was estimated from the correlation between the imaged bulk conductivity values and the water conductivity values measured in groundwater, in order to convert the imaging results from bulk conductivity to water conductivity. The geophysical models were actively used for supporting the geological modelling and the imaging of hydraulic permeability and water conductivity allowed for a better discrimination of the clay/lignite lithology from the pore water conductivity. Furthermore, high water electrical conductivity values were found in a deep confined aquifer, which is separated by a low-permeability clay layer from a shallow aquifer. No contamination was expected in this part of the confined aquifer, and confirmation wells were drilled in the zone of increased water electrical conductivity derived from the geophysical results. Water samples from the new wells showed elevated concentrations of inorganic compounds responsible for the increased water electrical conductivity in the confined aquifer and high concentrations of xenobiotic organic contaminants such as chlorinated ethenes, sulfonamides and barbiturates.

Drip irrigation research update at NPRL

USDA-ARS?s Scientific Manuscript database

Drip irrigation research has been conducted since 1998 at NPRL. Systems include deep subsurface drip irrigation (SSDI), surface drip irrigation (SDI), and shallow subsurface drip irrigation (S3DI). Results have shown that SDI and S3DI are more economical to install than SSDI. SDI systems have more r...

SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 SEQUESTRATION (PRESENTATION)

EPA Science Inventory

The paper discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of the...

Long-Duration Orbit Exposure Experiment with Sub-Surface Microorganism from a Mars Terrestrial Analog

NASA Astrophysics Data System (ADS)

Davila, A. F.; Lim, D.; Fairen, A. G.; Uceda, E. R.; Zavaleta, J.; McKay, C.

2007-07-01

Orbit Exposure Experiments (OEE) allow us to test the possibility of life transfer between planets and moons. Deep sub-surface microorganisms may be the best candidates to survive long-term exposure to space conditions. A long duration OEE is proposed to test our hypothesis.

Genomic Evidence of Chemotrophic Metabolisms in Deep-Dwelling Chloroflexi Conferred by Ancient Horizontal Gene Transfer Events

NASA Astrophysics Data System (ADS)

Momper, L. M.; Magnabosco, C.; Amend, J.; Osburn, M. R.; Fournier, G. P.

2017-12-01

The marine and terrestrial subsurface biospheres represent quite likely the largest reservoirs for life on Earth, directly impacting surface processes and global cycles throughout Earth's history. In the deep subsurface biosphere (DSB) organic carbon and energy are often extremely scarce. However, archaea and bacteria are able to persist in the DSB to at least 3.5 km below surface [1]. Understanding how they persist, and by what metabolisms they subsist, are key questions in this biosphere. To address these questions we investigated 5 global DSB environments: one legacy mine in South Dakota, USA, 3 mines in South Africa and marine fluids circulating beneath the Juan de Fuca Ridge. Boreholes within these mines provided access to fluids buried beneath the earth's surface and sampled depths down to 3.1 km. Geochemical data were collected concomitantly with DNA for metagenomic sequencing. We examined genomes of the ancient and deeply branching Chloroflexi for metabolic capabilities and interrogated the geochemical drivers behind those metabolisms with in situ thermodynamic modeling of reaction energetics. In total, 23 Chloroflexi genomes were identified and analyzed from the 5 subsurface sites. Genes for nitrate reduction (nar) and sulfite reduction (dsr) were found in many of the South Africa Chloroflexi but were absent from genomes collected in South Dakota. Indeed, nitrate reduction was among the most energetically favorable reactions in South African fluids (10-14 kJ cell-1 sec -1 per mol of reactant) and sulfur reduction with Fe2+ or H2 was also exergonic [2]. Conversely, genes for nitrite and nitrous oxide reduction (nrf, nir and nos) were found in genomes collected in South Dakota and Juan de Fuca, but not South Africa. We examined the origin of genes conferring these metabolisms in the Chloroflexi genomes. We discovered evidence for horizontal gene transfer (HGT) for all of these putative metabolisms. Retention of these genes in Chloroflexi lineages indicates HGT may have conferred an advantageous metabolism in DSB environments. We are using molecular dating techniques to constrain the timing of these HGT events on geologic timescales. [1] Baker J. B. et al. (2003) Environ Microbiol., 5, 267-277. [2] Magnabosco C. et al. (2016) ISME J, 10(3), 730-741.

A passive low frequency instrument for radio wave sounding the subsurface oceans of the Jovian icy moons: An instrument concept

NASA Astrophysics Data System (ADS)

Hartogh, P.; Ilyushin, Ya. A.

2016-10-01

Exploration of subsurface oceans on Jovian icy moons is a key issue of the icy moons' geology. Electromagnetic wave propagation is the only way to probe their icy mantles from the orbit. In the present paper, a principal concept of a passive interferometric instrument for deep sounding of the icy moons' crust is proposed. Its working principle is measuring and correlating Jupiter's radio wave emissions with reflections from the deep sub-surface of the icy moons. A number of the functional aspects of the proposed experiment are studied, in particular, impact of the wave scattering on the surface terrain on the instrument performance and digital sampling of the noisy signal. Results of the test of the laboratory prototype of the instrument are also presented in the paper.

Sources of Hydrogen as Food for Deep Microbial Communities

NASA Technical Reports Server (NTRS)

Freund, Friedemann; Fonda, Mark (Technical Monitor)

1998-01-01

To survive in deep subsurface environments autolithotrophic microbial communities require a sustainable food supply. One possible source is H2 which forms when H2O reacts with ferrous iron at rock surfaces or mineral grain boundaries to produce H2 plus ferric iron. The amount of H2 that can be supplied in this way, however, is relatively small and may not last for more than a few hundred or thousand years. A much larger reservoir of H2 exists in the rocks, inside mineral grains, arising from an as yet little-known redox conversion that affects OH- in nominally anhydrous minerals. These OH- represent small amounts of "water" that become incorporated during crystallization in H2O-laden environments. A corollary of the H2 formation from OH- is the formation of peroxy, an oxidized form of oxygen. While the peroxy become part of the mineral structure, the H2 molecules are diffusively mobile and can escape from within the mineral grains, entering the intergranular space. Assuming cautiously realistic number densities of OH- undergoing the in situ redox conversion to H2 plus peroxy, a 10 km deep rock column is expected to contain enough H2 to allow for a constant degassing rate of 50-100 nmole H2 per day per sq cm over 30 million years.

Microbial community composition along a 50 000-year lacustrine sediment sequence

PubMed Central

Ariztegui, Daniel; Horn, Fabian; Kallmeyer, Jens; Orsi, William D

2018-01-01

Abstract For decades, microbial community composition in subseafloor sediments has been the focus of extensive studies. In deep lacustrine sediments, however, the taxonomic composition of microbial communities remains undercharacterized. Greater knowledge on microbial diversity in lacustrine sediments would improve our understanding of how environmental factors, and resulting selective pressures, shape subsurface biospheres in marine and freshwater sediments. Using high-throughput sequencing of 16S rRNA genes across high-resolution climate intervals covering the last 50 000 years in Laguna Potrok Aike, Argentina, we identified changes in microbial populations in response to both past environmental conditions and geochemical changes of the sediment during burial. Microbial communities in Holocene sediments were most diverse, reflecting a layering of taxa linked to electron acceptors availability. In deeper intervals, the data show that salinity, organic matter and the depositional conditions over the Last Glacial-interglacial cycle were all selective pressures in the deep lacustrine assemblage resulting in a genetically distinct biosphere from the surface dominated primarily by Bathyarchaeota and Atribacteria groups. However, similar to marine sediments, some dominant taxa in the shallow subsurface persisted into the subsurface as minor fraction of the community. The subsequent establishment of a deep subsurface community likely results from a combination of paleoenvironmental factors that have shaped the pool of available substrates, together with substrate depletion and/or reworking of organic matter with depth. PMID:29471361

U.S. Geological survey program on toxic waste--ground-water contamination; proceedings of the Second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985

USGS Publications Warehouse

Ragone, S.E.

1988-01-01

This study characterizes the clay minerals in sediments associated with a plume of creosote-contaminated groundwater. The plume of contaminated groundwater near Pensacola, FL, is in shallow, permeable, Miocene to Holocene quartz sand and flows southward toward Pensacola Bay. Clay-size fractions were separated from 41 cores, chiefly split-spoon samples at 13 drill sites. The most striking feature of the chemical analyses of the clay fractions from uncontaminated site 2 and contaminated sites 4,5,6, and 7 is the variability of iron oxide (species in some samples as Fe2O3); total iron oxide abundance is lowest (2.5%) in uncontaminated sample 2-40, but is > 4.5% (4.5 to 8.5%) in the remaining assemblages. One feature suggesting interaction between the indigenous clays and the waste plume is the presence of nontronite-rich smectite. Nontronite commonly has been identified as the product of hydrothermal alteration and deep-sea weathering of submarine basalts; it is not a common constituent of Cenozoic Gulf Coast sediments. At the Pensacola site, relatively abundant nontronitic smectite is confined to contaminated sands or associated muds; it is least abundant or absent in sands and muds peripheral to the waste plume. The geochemistry of the waste plume, its substantial dissolved, (chiefly ferrous iron), mildly acidic (pH 5-6), and low redox composition, provides an environment similar to that previously determined for the low-temperature synthesis of nontronite. Data from clay-size fractions confirm conclusions that neoformed pyrite in some grain coatings occurs in an assemblage with excess iron over that required in the pyrite. Continuing studies to evaluate these tentative conclusions include: (1) chemical analysis of clay fractions from remaining sites to further examine the apparent relation between iron content and abundance of nontronitic smectite; (2) clay separation and analysis, and pore fluid extraction (squeezing or ultracentrifugation) and analysis from a continuous core through the mud lens to determine pore fluid composition (presence or absence of waste fluid), and character of associated clay minerals; and (3) clay separation and analysis in both permeable sands and the intervening mud lens that are clearly outside the limits of the waste plume to further document the effects of the plume. (See also W90-00022) (Lantz-PTT)

The Natural Enrichment of Stable Cesium in Weathered Micaceous Materials and Its Implications for 137Cs Sorption.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elliott, W. Crawford; Kahn, Bernd; Rosson, Robert

2011-11-14

In this exploratory project, we are testing two interrelated hypotheses about the sorption of Cs within weathered micaceous materials in subsurface regolith materials from the Savannah River Site (SRS) located on the Atlantic Coastal Plain: 1) that stable cesium has become significantly enriched relative to potassium in subsurface micaceous particles as a result of chemical weathering processes; and 2) that the Cs so present is sufficient to be a major factor determining the ability of the subsurface materials to take up and hold 137Cs. To test these hypotheses, we collected by hand augur soil samples corresponding to soils representative atmore » the SRS: upland regolith (Fuquay series); soils formed on Tobacco Road Sandstone; and, soils formed on Quaternary Alluvium. From our data, the quantification of the amounts of stable cesium concentrated in various sites within 2:1 phyllosilicates by natural processes is highly relevant toward understanding the future sorption of 137Cs by the mica, illite, vermiculite, and hydroxyl interstratified vermiculite (HIV) phases present in the subsurface at and in proximity to SRS. Studying sorption and fixation of Cs in these micaceous phases interlayers potentially leads to increased knowledge to the extent that stable Cs resists exchange with ion exchange cations (Mg, NH4, or even alkyl ammonium compounds) and to the extent that Cs can become fixed over the long term. Such knowledge will help in the development of 137Cs remediation strategies for the long-term, which is a critical aspect of the SBR goals. We characterized the mineralogy, K-Ar ages of the soil and soil clay fractions (before and after acid treatment), and alkali element chemistry (K, Rb, Cs) of the clay fractions of soils collected from these three different types of soils. The clay fractions of the Fuquay soils are composed of kaolinite, and hydroxy interstratified vermiculite (HIV). Kaolinite, HIV, quartz, gibbsite and illite are found in the quaternary soils. Leach experiments using 10% nitric acid and 50% nitric acid were performed on 62 mesh fractions to show the amounts of Cs and Rb relative to K (Cs/K, Rb/K) that are exchangeable in these soils compared to Coastal Plain micas and upper continental crust. The Cs/K and Rb/K of the leachates are considerably higher relative to both upper continental crust and relative to weathered micas found in Georgia Coast Plain sediments. The K-Ar ages of the clay fractions of five different SRS soil series were ca. 320 Ma. After leaching with nitric acid, the ages of the soil clay fractions were approximately the same as the unleached soil clays. Based on the similarity of these ages to the ages of Coastal Plain micas, the K and Ar remaining after treatment is believed to be enclosed in a relect mica in the HIV phases in the soils. The HIV is likely a mica-HIV intergrade. Based on these data, stable cesium has become significantly enriched relative to potassium in subsurface micaceous particles as a result of chemical weathering processes in the SRS Fuquay soils studied thus far. Our data permit the interpretation describing the sorption of Cs and Rb in an apex site or in a hard to reach hard-to-exchange sorption site during pedogenesis. In terms of testing the second hypothesis, our work is ongoing and we report some preliminary data on Cs-137 and Rb-85 exchange experiments on select SRS Fuquay soils (-2 mm). Our isotopic equilibration experiments using Cs and Rb isotopes in separate exchange experiments show only small amounts of Cs and Rb in the original sample is exchangeable isotopically for a period of a few weeks in acidified conditions. The isotope exchange experiments provide support for our interpretation that pedogenically accumulated Cs (and Rb) occupy sites that are unavailable to exchange or exchange slowly in acid conditions corresponding to present conditions in SRS soils. In more basic solutions, greater exchange isotopic exchange is noted and suggests an expansion of interlayer sites thereby permitting more isotopic exchange of Cs and Rb.« less

Use of geological mapping tools to improve the hydraulic performance of SuDS.

PubMed

Bockhorn, Britta; Klint, Knud Erik Strøyberg; Jensen, Marina Bergen; Møller, Ingelise

2015-01-01

Most cities in Denmark are situated on low permeable clay rich deposits. These sediments are of glacial origin and range among the most heterogeneous, with hydraulic conductivities spanning several orders of magnitude. This heterogeneity has obvious consequences for the sizing of sustainable urban drainage systems (SuDS). We have tested methods to reveal geological heterogeneity at field scale to identify the most suitable sites for the placement of infiltration elements and to minimize their required size. We assessed the geological heterogeneity of a clay till plain in Eastern Jutland, Denmark measuring the shallow subsurface resistivity with a geoelectrical multi-electrode system. To confirm the resistivity data we conducted a spear auger mapping. The exposed sediments ranged from clay tills over sandy clay tills to sandy tills and correspond well to the geoelectrical data. To verify the value of geological information for placement of infiltration elements we carried out a number of infiltration tests on geologically different areas across the field, and we observed infiltration rates two times higher in the sandy till area than in the clay till area, thus demonstrating that the hydraulic performance of SuDS can be increased considerably and oversizing avoided if field geological heterogeneity is revealed before placing SuDS.

Horizontal Planting of Green Ash Cuttings on a Sharkey Clay Site

Treesearch

H. E. Kennedy

1974-01-01

Horizontally planted green ash cuttings made from 1-0 seedlings sprouted and grew well, as did seedlings and vertically planted cuttings. Ten- and l4-inch cuttings planted 1 and 3 inches deep sprouted best. Two-inch-long cuttings and ones planted 6 inches deep performed unsatisfactorily.

Probing Metabolic Activity of Deep Subseafloor Life with NanoSIMS

NASA Astrophysics Data System (ADS)

Morono, Y.; Terada, T.; Itoh, M.; Inagaki, F.

2014-12-01

There are very few natural environments where life is absent in the Earth's surface biosphere. However, uninhabitable region is expected to be exist in the deep subsurface biosphere, of which extent and constraining factor(s) have still remained largly unknown. Scientific ocean drilling have revealed that microbial communities in sediments are generally phylogenetically distinct from known spieces isolated from the Earth's surface biosphere, and hence metabolic functions of the deep subseafloor life remain unknown. In addition, activity of subseafloor microbial cells are thought to be extraordinally slow, as indicated by limited supply of neutrient and energy substrates. To understand the limits of the Earth's subseafloor biosphere and metabolic functions of microbial populations, detection and quantification of the deeply buried microbial cells in geological habitats are fundamentary important. Using newly developed cell separation techniques as well as an discriminative cell detection system, the current quantification limit of sedimentary microbial cells approaches to 102 cells/cm3. These techniques allow not only to assess very small microbial population close to the subsurface biotic fringe, but also to separate and sort the target cells using flow cytometric cell sorter. Once the deep subseafloor microbial cells are detached from mineral grains and sorted, it opens new windows to subsequent molecular ecological and element/isotopic analyses. With a combined use of nano-scale secondary ion masspectrometry (NanoSIMS) and stable isotope-probing techniques, it is possible to detect and measure activity of substrate incorporation into biomass, even for extremely slow metabolic processes such as uncharacteriszed deep subseafloor life. For example, it was evidenced by NanoSIMS that at least over 80% of microbial cells at ~200 meters-deep, 460,000-year-old sedimentary habitat are indeed live, which substrate incooporation was found to be low (10-15 gC/cell/day) even under the lab incubation condition. Also microbial activity in ultraoligotrophic biosphere samples such as the South Pacific Gyre (i.e., IODP Expeditions 329) will be shown. Our results demonstrates metabolic potential of microbes that have been survived for geological timescale in extremely starved condition.

The metal oxide fraction of pelagic sediment in the equatorial North Pacific Ocean: A source of metals in ferromanganese nodules

USGS Publications Warehouse

Piper, D.Z.

1988-01-01

Pelagic sediment recovered at DOMES Site A in the equatorial North Pacific (151??W, 9?? 15???N) consists of a surface homogeneous layer, approximately 10 cm thick, overlying a strongly mottled layer that is lighter in color. The radiolarian composition of both units is Quaternary. In areas where this sediment was only a few centimeters thick, the underlying sediment was early Tertiary. Clay mineralogy and major oxide composition of the two Quaternary sediments are uniform. Their similarity to continental shale suggests that the sediment has a terrigenous source. Clay mineralogy and major oxide composition of the Tertiary sediment also are uniform, although they differ markedly from the Quarternary sediment. In contrast to the major oxides, concentrations of Mn, Co, Cu, and Ni soluble in hydroxylamine hydrochlorideacetic acid are strongly different in the surface and subsurface Quaternary sediment. Mn and Ni exhibit pronounced depletions in the subsurface sediment, Ni slightly more than Mn. Cu is also depleted in the subsurface sediment, but less than Mn. It is also depleted in the subsurface Tertiary sediment, whereas the Mn concentration remains high. Concentration of Co relative to Mn increases into the subsurface Quaternary sediment to a constant Co:Mn ratio of 3 ?? 10-2. The trivalent REE (the REE exclusive of Ce) and Fe exhibit little down-core variation. Distribution of elements in these sediments is closely related to their concentration in associated surface ferromanganese nodules. The nodules are of two distinct types: those from the area where the Quaternary sediment is relatively thick have ??-MnO2 as the dominant manganese mineral. The ratios of Ni:Mn, Cu:Mn, and Fe:Mn in these nodules approximate the corresponding ratios of the soluble fraction of surface sediment. Todorokite is the dominant mineral of nodules recovered from areas where the Quaternary sediment is thin. Relatively high Cu/Mn, Ni/Mn, and low Fe/Mn ratios of these nodules mirror differences between the soluble fraction of surface and subsurface Quaternary sediment. These compositional trends of sediment and nodules at DOMES Site A reflect a diagenetic origin for the todorokite nodules and a predominantly hydrogenous origin for the ??-MnO2 nodules. ?? 1988.

Chemical indicators of subsurface temperature applied to hot spring waters of Yellowstone National Park, Wyoming, U.S.A.

USGS Publications Warehouse

Fournier, R.O.; Truesdell, A.H.

1970-01-01

Under favorable conditions the chemistry of hot springs may give reliable indications of subsurface temperatures and circulation patterns. These chemical indicators can be classified by the type of process involved: {A table is presented}. All these indicators have certain limitations. The silica geothermometer gives results independent of the local mineral suite and gas partial pressures, but may be affected by dilution. Alkali ratios are strongly affected by the local mineral suite and the formation of complex ions. Carbonate-chloride ratios are strongly affected by subsurface PCO2. The relative concentration of volatiles can be very misleading in high-pressure liquid systems. In Yellowstone National Park most thermal waters issue from hot, shallow aquifers with pressures in excess of hydrostatic by 2 to 6 bars and with large flows (the flow of hot spring water from the Park is greater than 4000 liters per second). These conditions should be ideal for the use of chemical indicators to estimate aquifer temperatures. In five drill holes aquifer temperatures were within 2??C of that predicted from the silica content of nearby hot springs; the temperature level off at a lower value than predicted in only one hole, and in four other holes drilling was terminated before the predicted aquifer temperature was reached. The temperature-Na/K ratio relationship does not follow any published experimental or empirical curve for water-feldspar or water-clay reactions. We suspect that ion exchange reactions involving zeolites in the Yellowstone rocks result in higher Na/K ratios at given temperatures than result from feldspar or clay reactions. Comparison of SiO2 and Cl/(HCO3 + CO3) suggest that because of higher subsurface PCO2 in Upper Geyser Basin a given Cl/(HCO3 + CO3) ratio there means a higher temperature than in Lower Geyser Basin. No correlation was found in Yellowstone Park between the subsurface regions of highest temperature and the relative concentration of volatile components such as boron and ammonia. ?? 1971.

Mapping Site Remediation with Electrical Resistivity Tomography Explored via Coupled-Model Simulations

NASA Astrophysics Data System (ADS)

Power, C.; Gerhard, J. I.; Tsourlos, P.; Giannopoulos, A.

2011-12-01

Remediation programs for sites contaminated with dense non-aqueous phase liquids (DNAPLs) would benefit from an ability to non-intrusively map the evolving volume and extent of the DNAPL source zone. Electrical resistivity tomography (ERT) is a well-established geophysical tool, widely used outside the remediation industry, that has significant potential for mapping DNAPL source zones. However, that potential has not been realized due to challenges in data interpretation from contaminated sites - in either a qualitative or quantitative way. The objective of this study is to evaluate the potential of ERT to map realistic, evolving DNAPL source zones within complex subsurface environments during remedial efforts. For this purpose, a novel coupled model was developed that integrates a multiphase flow model (DNAPL3D-MT), which generates realistic DNAPL release scenarios, with 3DINV, an ERT model which calculates the corresponding resistivity response. This presentation will describe the developed model coupling methodology, which integrates published petrophysical relationships to generate an electrical resistivity field that accounts for both the spatial heterogeneity of subsurface soils and the evolving spatial distribution of fluids (including permeability, porosity, clay content and air/water/DNAPL saturation). It will also present an example in which the coupled model was employed to explore the ability of ERT to track the remediation of a DNAPL source zone. A field-scale, three-dimensional release of chlorinated solvent DNAPL into heterogeneous clayey sand was simulated, including the subsurface migration and subsequent removal of the DNAPL source zone via dissolution in groundwater. Periodic surveys of this site via ERT applied at the surface were then simulated and inversion programs were used to calculate the subsurface distribution of electrical properties. This presentation will summarize this approach and its potential as a research tool exploring the range of site conditions under which ERT may prove useful in aiding DNAPL site remediation. Moreover, it is expected to provide a cost-effective avenue to test optimum ERT data acquisition, inversion and interpretative tools at contaminated sites.

Controls on radium transport by adsorption to iron minerals

NASA Astrophysics Data System (ADS)

Chen, M.; Wang, T.; Kocar, B. D.

2015-12-01

Radium is a naturally occurring radioactive metal found in many subsurface environments. Radium isotopes are generated by uranium and thorium decay, and are particularly abundant within groundwaters where minimal porewater flux leads to accumulation. These isotopes are used as natural tracers for estimating submarine groundwater discharge (SGD) [1], allowing for large scale estimation of GW fluxes into and out of the ocean [2]. They also represent a substantial hazard in wastewater produced after hydraulic fracturing for natural gas extraction [3], resulting in a significant risk of environmental release to surface and near-surface waters, and increased cost for water treatment or disposal. Adsorption to mineral surfaces represents a dominant pathway of radium retention in subsurface environments. For SGD studies, adsorption processes impact estimates of GW fluxes, while in hydraulic fracturing, radium adsorption to aquifer solids mediates wastewater radium activities. Analysis of past sorption studies revealed large variability in partition coefficients [4], while examination of radium adsorption kinetics and surface complexation have only recently started [5]. Accordingly, we present the results of sorption and column experiments of radium with a suite of iron minerals representative of those found within deep saline and near-surface (freshwater) aquifers, and evaluate impacts of varying salinity solutions through artificial waters. Further, we explore the impacts of pyrite oxidation and ferrihydrite transformation to other iron-bearing secondary minerals on the transport and retention of radium. These results will provide critical information on the mineralogical controls on radium retention in subsurface environments, and will therefore improve predictions of radium groundwater transport in natural and contaminated systems. [1] Charette, M.A., Buesseler, K.O. & Andrews, J.E., Limnol. Oceanogr. (2001). [2] Moore, W.S., Ann. Rev. Mar. Sci. (2010). [3] Vengosh, A. et al. Environ. Sci. Technol., (2014). [4] Beck, A., Cochran, M., Marine Chem., (2013). [5] Sajih, M. et al. Geochim. Cosmochim. AC. (2014).

Research Performed at NETL on the Subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

Deep below our feet, lies the unique and complex world of the subsurface. A world that is improving the lives of Americans and brimming with the potential to generate even greater benefits through NETL research. NETL research supports industry by improving resource extraction while also helping to make carbon storage safe and more effective.

Biofilm development in a hotspot of mixing between shallow and deep groundwater in a fractured aquifer: field evidence from joint flow, chemical and microbiological characterization

NASA Astrophysics Data System (ADS)

Bochet, Olivier; Le Borgne, Tanguy; Pédrot, Mathieu; Labasque, Thierry; Lavenant, Nicolas; Petton, Christophe; Dufresne, Alexis; Ben Maamar, Sarah; Chatton, Eliot; De la Bernardie, Jérôme; Aquilina, Luc

2015-04-01

Biofilm development in a hotspot of mixing between shallow and deep groundwater in a fractured aquifer: field evidence from joint flow, chemical and microbiological characterization Olivier Bochet1, Tanguy Le Borgne1, Mathieu Pédrot1, Thierry Labasque1, Nicolas Lavenant1, Christophe Petton1, Alexis Dufresne2,Sarah Ben Maamar1-2, Eliot Chatton1, Jérôme de la Bernardie1, Luc Aquilina1 1: Géosciences Rennes, CNRS UMR 6118, Université de Rennes 1, Campus de Beaulieu bât 14B, Rennes, France 2: Ecobio, CNRS UMR 6553, Université de Rennes 1, Campus de Beaulieu, bât 14, Rennes, France Biofilms play a major role in controlling the fluxes and reactivity of chemical species transported in hydrological systems. Their development can have either positive impacts on groundwater quality (e.g. attenuation of contaminants under natural or stimulated conditions), or possible negative effects on subsurface operations (e.g. bio-clogging of geothermal dipoles or artificial recharge systems). Micro-organisms require both electron donors and electron acceptors for cellular growth, proliferation and maintenance of their metabolic functions. The mechanisms controlling these reactions derive from the interactions occurring at the micro-scale that depend on mineral compositions, the biota of subsurface environment, but also fluid mixing, which determines the local concentrations of nutriments, electron donors and electron acceptors. Hence, mixing zones between oxygen and nutriment rich shallow groundwater and mineralized deep groundwater are often considered as potential hotspots of microbial activity, although relatively few field data document flow distributions, transport properties, chemical gradients and micro-organisms distributions across these mixing interfaces. Here we investigate the origin of a localized biofilm development observed in the fractured granite aquifer at the Ploemeur observatory (H+ network hplus.ore.fr).This biofilm composed of ferro-oxidizing bacteria is observed in an 130m deep artesian well. Borehole video logs show an important colonization of the well by the biofilm in the shallower part (0 to 60m), while it is inexistent in the deeper part (60 to 130m). As flow is localized in a few deep and shallow fractures, we presume that the spatial distribution of biofilm is controlled by mixing between shallow and deep groundwater. To verify this hypothesis we conducted a field campaign with joint characterization of the flow and chemical composition of water flowing from the different fractures, as well as the microbiological composition of the biofilm at different depth, using pyrosequencing techniques. We will discuss in this presentation the results of this interdisciplinary dataset and their implications for the occurrence of hotspots of microbiological activity in the subsurface.

Use of Groundwater Lifetime Expectancy for the Performance Assessment of Deep Geologic Radioactive Waste Repositories.

NASA Astrophysics Data System (ADS)

Cornaton, F.; Park, Y.; Normani, S.; Sudicky, E.; Sykes, J.

2005-12-01

Long-term solutions for the disposal of toxic wastes usually involve isolation of the wastes in a deep subsurface geologic environment. In the case of spent nuclear fuel, the safety of the host repository depends on two main barriers: the engineered barrier and the natural geological barrier. If radionuclide leakage occurs from the engineered barrier, the geological medium represents the ultimate barrier that is relied upon to ensure safety. Consequently, an evaluation of radionuclide travel times from the repository to the biosphere is critically important in a performance assessment analysis. In this study, we develop a travel time framework based on the concept of groundwater lifetime expectancy as a safety indicator. Lifetime expectancy characterizes the time radionuclides will spend in the subsurface after their release from the repository and prior to discharging into the biosphere. The probability density function of lifetime expectancy is computed throughout the host rock by solving the backward-in-time solute transport equation subject to a properly posed set of boundary conditions. It can then be used to define optimal repository locations. In a second step, the risk associated with selected sites can be evaluated by simulating an appropriate contaminant release history. The proposed methodology is applied in the context of a typical Canadian Shield environment. Based on a statistically-generated three-dimension network of fracture zones embedded in the granitic host rock, the sensitivity and the uncertainty of lifetime expectancy to the hydraulic and dispersive properties of the fracture network, including the impact of conditioning via their surface expressions, is computed in order to demonstrate the utility of the methodology.

CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough

PubMed Central

Wilkins, Michael J.; Hoyt, David W.; Marshall, Matthew J.; Alderson, Paul A.; Plymale, Andrew E.; Markillie, L. Meng; Tucker, Abby E.; Walter, Eric D.; Linggi, Bryan E.; Dohnalkova, Alice C.; Taylor, Ron C.

2014-01-01

Geologic carbon dioxide (CO2) sequestration drives physical and geochemical changes in deep subsurface environments that impact indigenous microbial activities. The combined effects of pressurized CO2 on a model sulfate-reducing microorganism, Desulfovibrio vulgaris, have been assessed using a suite of genomic and kinetic measurements. Novel high-pressure NMR time-series measurements using 13C-lactate were used to track D. vulgaris metabolism. We identified cessation of respiration at CO2 pressures of 10 bar, 25 bar, 50 bar, and 80 bar. Concurrent experiments using N2 as the pressurizing phase had no negative effect on microbial respiration, as inferred from reduction of sulfate to sulfide. Complementary pressurized batch incubations and fluorescence microscopy measurements supported NMR observations, and indicated that non-respiring cells were mostly viable at 50 bar CO2 for at least 4 h, and at 80 bar CO2 for 2 h. The fraction of dead cells increased rapidly after 4 h at 80 bar CO2. Transcriptomic (RNA-Seq) measurements on mRNA transcripts from CO2-incubated biomass indicated that cells up-regulated the production of certain amino acids (leucine, isoleucine) following CO2 exposure at elevated pressures, likely as part of a general stress response. Evidence for other poorly understood stress responses were also identified within RNA-Seq data, suggesting that while pressurized CO2 severely limits the growth and respiration of D. vulgaris cells, biomass retains intact cell membranes at pressures up to 80 bar CO2. Together, these data show that geologic sequestration of CO2 may have significant impacts on rates of sulfate reduction in many deep subsurface environments where this metabolism is a key respiratory process. PMID:25309528

CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilkins, Michael J.; Hoyt, David W.; Marshall, Matthew J.

Geologic carbon dioxide (CO2) sequestration drives physical and geochemical changes in deep subsurface environments that impact indigenous microbial activities. The combined effects of pressurized CO2 on a model sulfate-reducing microorganism, Desulfovibrio vulgaris, have been assessed using a suite of genomic and kinetic measurements. Novel high-pressure NMR time-series measurements using 13C-lactate were used to track D. vulgaris metabolism. We identified cessation of respiration at CO2 pressures of 10 bar, 25 bar, 50 bar, and 80 bar. Concurrent experiments using N2 as the pressurizing phase had no negative effect on microbial respiration, as inferred from reduction of sulfate to sulfide. Complementary pressurizedmore » batch incubations and fluorescence microscopy measurements supported NMR observations, and indicated that non-respiring cells were mostly viable at 50 bar CO2 for at least four hours, and at 80 bar CO2 for two hours. The fraction of dead cells increased rapidly after four hours at 80 bar CO2. Transcriptomic (RNA-Seq) measurements on mRNA transcripts from CO2-incubated biomass indicated that cells up-regulated the production of certain amino acids (leucine, isoleucine) following CO2 exposure at elevated pressures, likely as part of a general stress response. Evidence for other poorly understood stress responses were also identified within RNA-Seq data, suggesting that while pressurized CO2 severely limits the growth and respiration of D. vulgaris cells, biomass retains intact cell membranes at pressures up to 80 bar CO2. Together, these data show that geologic sequestration of CO2 may have significant impacts on rates of sulfate reduction in many deep subsurface environments where this metabolism is a key respiratory process.« less

The contribution of the Precambrian continental lithosphere to global H2 production.

PubMed

Lollar, Barbara Sherwood; Onstott, T C; Lacrampe-Couloume, G; Ballentine, C J

2014-12-18

Microbial ecosystems can be sustained by hydrogen gas (H2)-producing water-rock interactions in the Earth's subsurface and at deep ocean vents. Current estimates of global H2 production from the marine lithosphere by water-rock reactions (hydration) are in the range of 10(11) moles per year. Recent explorations of saline fracture waters in the Precambrian continental subsurface have identified environments as rich in H2 as hydrothermal vents and seafloor-spreading centres and have suggested a link between dissolved H2 and the radiolytic dissociation of water. However, extrapolation of a regional H2 flux based on the deep gold mines of the Witwatersrand basin in South Africa yields a contribution of the Precambrian lithosphere to global H2 production that was thought to be negligible (0.009 × 10(11) moles per year). Here we present a global compilation of published and new H2 concentration data obtained from Precambrian rocks and find that the H2 production potential of the Precambrian continental lithosphere has been underestimated. We suggest that this can be explained by a lack of consideration of additional H2-producing reactions, such as serpentinization, and the absence of appropriate scaling of H2 measurements from these environments to account for the fact that Precambrian crust represents over 70 per cent of global continental crust surface area. If H2 production via both radiolysis and hydration reactions is taken into account, our estimate of H2 production rates from the Precambrian continental lithosphere of 0.36-2.27 × 10(11) moles per year is comparable to estimates from marine systems.

Continental Shelf Sediments of Sarawak, Malaysian Borneo.

PubMed

Morni, Wan Zabidii Wan; Ab Rahim, Siti Akmar Khadijah; Masron, Tarmiji; Rumpet, Richard; Musel, Jamil; Hassan, Ruhana

2017-01-01

Sediment distributions in deep sea influence the benthic community structure and thus play an important role in shaping the marine ecosystem. Several studies on sediment characteristics had been conducted in South China Sea (SCS), but only limited to coastal areas of regions within SCS territories. Therefore, this study was carried out to analyze the benthic sediment profile in an area beyond 12 nautical miles off the coast of Sarawak, southern SCS. Sediment samples were collected from 31 stations, comprising three depth ranges: (I) 20-50 m, (II) 50-100 m, and (III) 100-200 m. The total organic matter (TOM) contents were determined and subjected to dry and wet sieving methods for particle size analysis. TOM contents in the deep area (>50 m) were significantly higher ( p = 0.05) and positively correlated ( r = 0.73) with silt-clay fraction. About 55% and 82% of stations in strata II and III, respectively, were dominated by silt-clay fractions (<63  μ m mean diameter), coherent with TOM data. In addition, sediments in the deep area (>50 m) tend to be poorly sorted, very fine skewed, and platykurtic. Unlike data obtained 20 years ago which reported high content of silt-clay (58%), this study recorded a lower content (35%); therefore, changes in sediment load had been observed in southern SCS.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

USGS Publications Warehouse

Holmes, Dawn E.; O'Neil, Regina A.; Vrionis, Helen A.; N'Guessan, Lucie A.; Ortiz-Bernad, Irene; Larrahondo, Maria J.; Adams, Lorrie A.; Ward, Joy A.; Nicoll , Julie S.; Nevin, Kelly P.; Chavan, Milind A.; Johnson, Jessica P.; Long, Philip E.; Lovely, Derek R.

2007-01-01

There are distinct differences in the physiology of Geobacter species available in pure culture. Therefore, to understand the ecology of Geobacter species in subsurface environments, it is important to know which species predominate. Clone libraries were assembled with 16S rRNA genes and transcripts amplified from three subsurface environments in which Geobacter species are known to be important members of the microbial community: (1) a uranium-contaminated aquifer located in Rifle, CO, USA undergoing in situ bioremediation; (2) an acetate-impacted aquifer that serves as an analog for the long-term acetate amendments proposed for in situ uranium bioremediation and (3) a petroleum-contaminated aquifer in which Geobacter species play a role in the oxidation of aromatic hydrocarbons coupled with the reduction of Fe(III). The majority of Geobacteraceae 16S rRNA sequences found in these environments clustered in a phylogenetically coherent subsurface clade, which also contains a number of Geobacter species isolated from subsurface environments. Concatamers constructed with 43 Geobacter genes amplified from these sites also clustered within this subsurface clade. 16S rRNA transcript and gene sequences in the sediments and groundwater at the Rifle site were highly similar, suggesting that sampling groundwater via monitoring wells can recover the most active Geobacter species. These results suggest that further study of Geobacter species in the subsurface clade is necessary to accurately model the behavior of Geobacter species during subsurface bioremediation of metal and organic contaminants.

Uncertainty Quantification and Assessment of CO2 Leakage in Groundwater Aquifers

NASA Astrophysics Data System (ADS)

Carroll, S.; Mansoor, K.; Sun, Y.; Jones, E.

2011-12-01

Complexity of subsurface aquifers and the geochemical reactions that control drinking water compositions complicate our ability to estimate the impact of leaking CO2 on groundwater quality. We combined lithologic field data from the High Plains Aquifer, numerical simulations, and uncertainty quantification analysis to assess the role of aquifer heterogeneity and physical transport on the extent of CO2 impacted plume over a 100-year period. The High Plains aquifer is a major aquifer over much of the central United States where CO2 may be sequestered in depleted oil and gas reservoirs or deep saline formations. Input parameters considered included, aquifer heterogeneity, permeability, porosity, regional groundwater flow, CO2 and TDS leakage rates over time, and the number of leakage source points. Sensitivity analysis suggest that variations in sand and clay permeability, correlation lengths, van Genuchten parameters, and CO2 leakage rate have the greatest impact on impacted volume or maximum distance from the leak source. A key finding is that relative sensitivity of the parameters changes over the 100-year period. Reduced order models developed from regression of the numerical simulations show that volume of the CO2-impacted aquifer increases over time with 2 order of magnitude variance.

Effective diffusion coefficients of DNAPL waste components in saturated low permeability soil materials.

PubMed

Ayral-Cinar, Derya; Demond, Avery H

2017-12-01

Diffusion is regarded as the dominant transport mechanism into and out of low permeable subsurface lenses and layers in the subsurface. But, some reports of mass storage in such zones are higher than what might be attributable to diffusion, based on estimated diffusion coefficients. Despite the importance of diffusion to efforts to estimate the quantity of residual contamination in the subsurface, relatively few studies present measured diffusion coefficients of organic solutes in saturated low permeability soils. This study reports the diffusion coefficients of a trichloroethylene (TCE), and an anionic surfactant, Aerosol OT (AOT), in water-saturated silt and a silt-montmorillonite (25:75) mixture, obtained using steady-state experiments. The relative diffusivity ranged from 0.11 to 0.17 for all three compounds for the silt and the silt-clay mixture that was allowed to expand. In the case in which the swelling was constrained, the relative diffusivity was about 0.07. In addition, the relative diffusivity of 13 C-labeled TCE through a water saturated silt-clay mixture that had contacted a field dense non-aqueous phase liquid (DNAPL) for 18months was measured and equaled 0.001. These experimental results were compared with the estimates generated using common correlations, and it was found that, in all cases, the measured diffusion coefficients were significantly lower than the estimated. Thus, the discrepancy between mass accumulations observed in the field and the mass storage that can attributable to diffusion may be greater than previously believed. Copyright © 2017. Published by Elsevier B.V.

The Collins Creek and Pleasant Creek Formations: Two new upper cretaceous subsurface units in the Carolina/Georgia Coastal Plain

USGS Publications Warehouse

,; Prowell, D.C.; Christopher, R.A.

2004-01-01

This paper formally defines two new Upper Cretaceous subsurface units in the southern Atlantic Coastal Plain of North Carolina, South Carolina and Georgia: the Collins Creek Formation and the Pleasant Creek Formation. These units are confined to the subsurface of the outer Coastal Plain, and their type sections are established in corehole CHN-820 from Charleston County, S.C. The Collins Creek Formation consists of greenish-gray lignitic sand and dark-greenish-gray sandy clay and is documented in cores from Allendale, Beaufort, Berkeley, Dorchester, Jasper and Marion Counties, South Carolina, and from Screven County, Georgia. Previously, Collins Creek strata had been incorrectly assigned to the Middendorf Formation. These sediments occupy a stratigraphic position between the Turonian/Coniacian Cape Fear Formation (?) below and the proposed upper Coniacian to middle Santonian Pleasant Creek Formation above. The Collins Creek Formation is middle and late Coniacian in age on the basis of calcareous nannofossil and palynomorph analyses. The Pleasant Creek Formation consists of olive-gray sand and dark-greenish-gray silty to sandy clay and is documented in cores from New Hanover County, North Carolina, and Berkeley, Charleston, Dorchester, Horry and Marion Counties, South Carolina. The strata of this unit previously were assigned incorrectly to the Middendorf Formation and (or) the Cape Fear Formation. These sediments occupy a stratigraphic position between the proposed Collins Creek Formation below and the Shepherd Grove Formation above. The Pleasant Creek Formation is late Coniacian and middle Santonian in age, on the basis of its calcareous nannofossil and palynomorph assemblages.

Deep Submarine Tailings Disposal (DSTP) the Proposed Use of Submarine Canyons and Artificial Turbidity Currents for the Disposal of Mine Waste: Current Practice, Future Plans, and Cumulative Impacts.

NASA Astrophysics Data System (ADS)

Young, R.; Moran, R.

2015-12-01

The wastes from mining operations ( tailings) have been disposed of in the fluvial environment (riverine disposal) and in nearshore marine environments for much of the last century. The scale of modern mining operations has led to increasing use of steep slopes and submarine canyons for deposition of these wastes at depths of 2000m - 4000m. Current mine disposal operations in Indonesia and Papua New Guinea which use Deep Sea Tailings Placement (DSTP) release volumes between 5000 tpd and 160,000 tpd. Planning is underway by the"Consortium," an industry and government group in Chile which would deposit mine waste of 1M tpd into the Humbolt Current Large Marine Ecosystem (HCLME) which provides nearly 20% of the fish biomass harvested on a sustainable basis worldwide. Underwater pipelines discharge tailings as a slurry to create a continuous artificial turbidity current with particle size distribtions (PSD's) ranging from sand to clay sized fractions. Potential problems arise from benthic smothering, angular particulate uptake by benthic organisms, and from the bioaccumulation of a complex of heavy metals by both benthic and pelagic species. While much is known about the binding of copper and other toxic heavy metals in a reducing environment, little has been done to consider the implications of ocean dumping where 1% of tailings discharged may consist of unrecovered heavy metals. Synergistic cumulative impacts to just the HCLME from the dumping of the more than 3M tpy of reactive metals in these tailings sediments remains unknown and poses substantial risks. DSTP assumes a stable deep sea depositional environment but upwelling currents and plume shear may make this hard to accomplish.

Microbial Ecosystems from the Deepest Regions of the Terrestrial Deep Biosphere

NASA Astrophysics Data System (ADS)

Moser, D. P.

2011-12-01

Although recent discoveries from four continents support the existence of microbial ecosystems across vast regions of our planet's inner space, very little is known about the abundance, distribution, diversity, or ultimate depth limit of subsurface microbial life. These deep lithospheric inhabitants must contend with a variety of potential challenges including high temperature, pressure and salinity, extreme isolation, and low energy flux. Interestingly, although deep microbial ecosystems are assumed to be energy and nutrient limited, it is often difficult to identify any one limiting substrate and the energy for deep life is often present in relative abundance (e.g. as geologically-produced hydrogen or other reduced gases). Recently, the concept of radiation-supported deep microbial ecosystems has gained traction in the literature. In particular, one bacterium, a Firmicute denoted Candidatus Desulforudis audaxviator, has been shown to be prominent, and in cases dominate, in deep fracture fluids from across the Witwatersrand basin of South Africa, where it appears to persist by utilizing H2 and SO42- derived from radiochemical reactions in U-rich host rock. Until recently, these mines were thought to define the geographic limit of this genus and species; however, our recent North American detection of D. audaxviator in radioactive subsurface water resulting from underground nuclear tests both supports earlier assertions concerning the radiochemical lifestyle of D. audaxviator and greatly expands its range. Results such as these suggest that novel modes of life operating without inputs from the photosphere are possible, and thus may have implications for the likelihood of detecting life off the Earth (e.g. in the Martian subsurface). In addition to underground nuclear detonation cavities, this talk will consider insights gained from ongoing microbial ecology assessments from several to date unexplored deep ecosystems accessed via deep mines in the Black Hills (USA) and Canadian Shield (Canada) and exploratory boreholes in the Southern Great Basin (USA). The tantalizing possibility that several of these new potential habitats have exceeded some limit for life will be also be explored.

Life and Death on Mars and Earth

NASA Technical Reports Server (NTRS)

Zahnle, K. J.; Sleep, N. H.

1999-01-01

Failure to discover life on Mars has led a great many experts to conclude that it must be hiding. Where? The likeliest hiding places are deep beneath the surface, where geothermal heat could permit liquid water. In this the search for life on Mars parallels the search for water on Mars. Liquid water has been, at least on occasion, a geologically significant presence on the surface. Channels were cut and plains dissected. This water is now hidden, in all likelihood having drained to the base of the porous regolith, where it fills possibly frozen aquifers. Presumably any surviving biota has followed the water from the surface to its hiding places in the deep. Accordingly, we have extended our environmental impact assessment of the environmental hazards posed by large asteroid and comet impacts to Mars, and compare its case to Earth's. In particular, we address the continuous habitability of surface and subsurface environments.

Quantification of CO2 generation in sedimentary basins through carbonate/clays reactions with uncertain thermodynamic parameters

NASA Astrophysics Data System (ADS)

Ceriotti, G.; Porta, G. M.; Geloni, C.; Dalla Rosa, M.; Guadagnini, A.

2017-09-01

We develop a methodological framework and mathematical formulation which yields estimates of the uncertainty associated with the amounts of CO2 generated by Carbonate-Clays Reactions (CCR) in large-scale subsurface systems to assist characterization of the main features of this geochemical process. Our approach couples a one-dimensional compaction model, providing the dynamics of the evolution of porosity, temperature and pressure along the vertical direction, with a chemical model able to quantify the partial pressure of CO2 resulting from minerals and pore water interaction. The modeling framework we propose allows (i) estimating the depth at which the source of gases is located and (ii) quantifying the amount of CO2 generated, based on the mineralogy of the sediments involved in the basin formation process. A distinctive objective of the study is the quantification of the way the uncertainty affecting chemical equilibrium constants propagates to model outputs, i.e., the flux of CO2. These parameters are considered as key sources of uncertainty in our modeling approach because temperature and pressure distributions associated with deep burial depths typically fall outside the range of validity of commonly employed geochemical databases and typically used geochemical software. We also analyze the impact of the relative abundancy of primary phases in the sediments on the activation of CCR processes. As a test bed, we consider a computational study where pressure and temperature conditions are representative of those observed in real sedimentary formation. Our results are conducive to the probabilistic assessment of (i) the characteristic pressure and temperature at which CCR leads to generation of CO2 in sedimentary systems, (ii) the order of magnitude of the CO2 generation rate that can be associated with CCR processes.

Solution mining and resultant evaporite karst development in Tully Valley, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rubin, P.A.; Ayers, J.C.; Grady, K.A.

1991-01-01

A solution mining operation was conducted in Tully Valley, New York from 1889 to 1988. In excess of 37 million m{sup 3} of halite was removed from 335 to 518 meters below the ground surface. An interbedded sequence of gypsum, shales, limestones, and sandstone overlie the halite beds. This sequence is capped by thick, unconsolidated deposits of till, sand and gravel, and lacustrine clay. As a result of this mining, large void cavities were created, followed by numerous fractures extending upward to the ground surface. The resulting settlement area is in excess of 550 hectares. Within this area sinkholes formed,more » gaping fractures developed and streams were pirated into the subsurface. Interformational mixing of groundwater now occurs between formerly separate flow systems, providing substantial recharge to deep formations. Some 2 kms downvalley of the brine fields, in a smaller settlement area, and volcanos'' effuse weakly saline groundwater that flows into Onondaga Creek. The clay fraction of the effluent gives Onondaga Creek the appearance of chocolate milk for the {approx}26 kms it takes to reach Onondaga Lake. The location of the mud volcanos appears to coincide with an upvalley moving salt front. The number of mud boils and their areal extent has substantially increased since the onset of brining operations. By characterizing the chemistry of groundwaters in local formations and performing mixing calculations based on mass balance, the volcano effluents were shown to represent a mixture of groundwaters from 3--4 formations. Several working hypotheses are advanced and critically evaluated in an effort to define the dynamics necessary for rapid mud volcano growth in a karst setting.« less

Solution mining and resultant evaporite karst development in Tully Valley, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rubin, P.A.; Ayers, J.C.; Grady, K.A.

1991-12-31

A solution mining operation was conducted in Tully Valley, New York from 1889 to 1988. In excess of 37 million m{sup 3} of halite was removed from 335 to 518 meters below the ground surface. An interbedded sequence of gypsum, shales, limestones, and sandstone overlie the halite beds. This sequence is capped by thick, unconsolidated deposits of till, sand and gravel, and lacustrine clay. As a result of this mining, large void cavities were created, followed by numerous fractures extending upward to the ground surface. The resulting settlement area is in excess of 550 hectares. Within this area sinkholes formed,more » gaping fractures developed and streams were pirated into the subsurface. Interformational mixing of groundwater now occurs between formerly separate flow systems, providing substantial recharge to deep formations. Some 2 kms downvalley of the brine fields, in a smaller settlement area, and ``volcanos`` effuse weakly saline groundwater that flows into Onondaga Creek. The clay fraction of the effluent gives Onondaga Creek the appearance of chocolate milk for the {approx}26 kms it takes to reach Onondaga Lake. The location of the mud volcanos appears to coincide with an upvalley moving salt front. The number of mud boils and their areal extent has substantially increased since the onset of brining operations. By characterizing the chemistry of groundwaters in local formations and performing mixing calculations based on mass balance, the volcano effluents were shown to represent a mixture of groundwaters from 3--4 formations. Several working hypotheses are advanced and critically evaluated in an effort to define the dynamics necessary for rapid mud volcano growth in a karst setting.« less

Improving resistivity survey resolution at sites with limited spatial extent using buried electrode arrays

NASA Astrophysics Data System (ADS)

Kiflu, H.; Kruse, S.; Loke, M. H.; Wilkinson, P. B.; Harro, D.

2016-12-01

Electrical resistivity tomography (ERT) surveys are widely used in geological, environmental and engineering studies. However, the effectiveness of surface ERT surveys is limited by decreasing resolution with depth and near the ends of the survey line. Increasing the array length will increase depth of investigation, but may not be possible at urban sites where access is limited. One novel method of addressing these limitations while maintaining lateral coverage is to install an array of deep electrodes. Referred to here as the Multi-Electrode Resistivity Implant Technique (MERIT), self-driving pointed electrodes are implanted at depth below each surface electrode in an array, using direct-push technology. Optimal sequences of readings have been identified with the "Compare R" method of Wilkinson. Numerical, laboratory, and field case studies are applied to examine the effectiveness of the MERIT method, particularly for use in covered karst terrain. In the field case studies, resistivity images are compared against subsurface structure defined from borings, GPR surveys, and knowledge of prior land use. In karst terrain where limestone has a clay overburden, traditional surface resistivity methods suffer from lack of current penetration through the shallow clay layer. In these settings, the MERIT method is found to improve resolution of features between the surface and buried array, as well as increasing depth of penetration and enhancing imaging capabilities at the array ends. The method functions similar to a cross-borehole array between horizontal boreholes, and suffers from limitations common to borehole arrays. Inversion artifacts are common at depths close to the buried array, and because some readings involve high geometric factors, inversions are more susceptible to noise than traditional surface arrays. Results are improved by using errors from reciprocal measurements to weight the data during the inversion.

Application of multiple-point geostatistics to simulate the effect of small-scale aquifer heterogeneity on the efficiency of aquifer thermal energy storage

NASA Astrophysics Data System (ADS)

Possemiers, Mathias; Huysmans, Marijke; Batelaan, Okke

2015-08-01

Adequate aquifer characterization and simulation using heat transport models are indispensible for determining the optimal design for aquifer thermal energy storage (ATES) systems and wells. Recent model studies indicate that meter-scale heterogeneities in the hydraulic conductivity field introduce a considerable uncertainty in the distribution of thermal energy around an ATES system and can lead to a reduction in the thermal recoverability. In a study site in Bierbeek, Belgium, the influence of centimeter-scale clay drapes on the efficiency of a doublet ATES system and the distribution of the thermal energy around the ATES wells are quantified. Multiple-point geostatistical simulation of edge properties is used to incorporate the clay drapes in the models. The results show that clay drapes have an influence both on the distribution of thermal energy in the subsurface and on the efficiency of the ATES system. The distribution of the thermal energy is determined by the strike of the clay drapes, with the major axis of anisotropy parallel to the clay drape strike. The clay drapes have a negative impact (3.3-3.6 %) on the energy output in the models without a hydraulic gradient. In the models with a hydraulic gradient, however, the presence of clay drapes has a positive influence (1.6-10.2 %) on the energy output of the ATES system. It is concluded that it is important to incorporate small-scale heterogeneities in heat transport models to get a better estimate on ATES efficiency and distribution of thermal energy.

Application of multiple-point geostatistics to simulate the effect of small scale aquifer heterogeneity on the efficiency of Aquifer Thermal Energy Storage (ATES)

NASA Astrophysics Data System (ADS)

Possemiers, Mathias; Huysmans, Marijke; Batelaan, Okke

2015-04-01

Adequate aquifer characterization and simulation using heat transport models are indispensible for determining the optimal design for Aquifer Thermal Energy Storage (ATES) systems and wells. Recent model studies indicate that meter scale heterogeneities in the hydraulic conductivity field introduce a considerable uncertainty in the distribution of thermal energy around an ATES system and can lead to a reduction in the thermal recoverability. In this paper, the influence of centimeter scale clay drapes on the efficiency of a doublet ATES system and the distribution of the thermal energy around the ATES wells are quantified. Multiple-point geostatistical simulation of edge properties is used to incorporate the clay drapes in the models. The results show that clay drapes have an influence both on the distribution of thermal energy in the subsurface and on the efficiency of the ATES system. The distribution of the thermal energy is determined by the strike of the clay drapes, with the major axis of anisotropy parallel to the clay drape strike. The clay drapes have a negative impact (3.3 - 3.6%) on the energy output in the models without a hydraulic gradient. In the models with a hydraulic gradient, however, the presence of clay drapes has a positive influence (1.6 - 10.2%) on the energy output of the ATES system. It is concluded that it is important to incorporate small scale heterogeneities in heat transport models to get a better estimate on ATES efficiency and distribution of thermal energy.

Enhanced permanganate in situ chemical oxidation through MnO2 particle stabilization: evaluation in 1-D transport systems.

PubMed

Crimi, Michelle; Quickel, Mark; Ko, Saebom

2009-02-27

In situ chemical oxidation using permanganate is an increasingly employed approach to organic contaminant remediation at hazardous waste sites. Manganese dioxide (MnO2) particles form as a by-product of the reaction of permanganate with contaminants and naturally-reduced subsurface materials. These particles are of interest because they have the potential to deposit in the subsurface and impact the flow regime in/around permanganate injection, including the well screen, filter pack, and the surrounding subsurface formation. Control of these particles can allow for improved oxidant injection and transport, and contact between the oxidant and contaminants of concern. Sodium hexametaphosphate (HMP) has previously been identified as a promising aid to stabilize MnO2 in solution when included in the oxidizing solution, increasing the potential to inhibit particle deposition and impact subsurface flow. The goal of the experimental studies described herein was to investigate the ability of HMP to prevent particle deposition in transport studies using four different types of porous media. Permanganate was delivered to a contaminant source zone (trichloroethylene) located within four different media types with variations in sand, clay, organic carbon, and iron oxides (as goethite) content. Deposition of MnO2 within the columns was quantified with distance from the source zone. Experiments were repeated in replicate columns with the inclusion of HMP directly with the oxidant delivery solution, and MnO2 deposition was again quantified. While total MnO2 deposition within the 60 cm columns did not change significantly with the addition of HMP, deposition within the contaminant source zone decreased by 25-85%, depending on the specific media type. The greatest differences in deposition were observed in the goethite-containing and clay-containing columns. Columns containing these two media types experienced completely plugged flow in the oxidant-only delivery systems; however, the addition of HMP prevented this plugging within the columns, increasing the oxidant throughput.

Resistivity imaging of strata and faults in Bangladesh

NASA Astrophysics Data System (ADS)

Hosain, A.; Steckler, M. S.; Akhter, S. H.

2015-12-01

The Ganges-Brahmaputra-Meghna Delta, the largest in the world, is subject to deformation by active tectonics and dynamic river systems. It lies near the juncture of the Indian, Eurasian and Burmese plates and is being overthrust by both the Shillong Massif and the Indo-Burman Ranges. There are multiple major and minor active faults in Bangladesh, many of which are buried by the sedimentation. For example, the Madhupur tract is a Pleistocene upland in the middle part of Bengal Basin. Whether it is a passive interfluve of the river system or a tilted and tectonically uplifted block has been debated for decades. The Tippera Surface, in Comilla at the eastern part of the basin, is composed of uplifted and oxidized Holocene strata and overlies buried anticlines of the Indo-Burman fold belt. Furthermore, the rivers are subject to migrations, avulsions and other changes in course. The last major avulsion of the Brahmaputra River was only ~200 years ago. During the sea level fall in the last glaciation the major rivers created large incised valleys. In much of the exposed uplands there was the development of a weathered clay surface. This now forms a clay layer separating the Pleistocene and Holocene strata in large parts of Bangladesh. We use electrical resistivity surveying and hand-drilled borehole lithological data to better understand the subsurface discontinuities and structures. The resistivity system consists of an 84 electrode array powered by 2 car batteries and is capable of imaging lithologies to ~100m depth, similar to the depths of the boreholes used to calibrate the data. We extend our previous work on the western margin of the Madhupur Tract with additional lines on the eastern flank of Madhupur. Resistivity lines along the exposed Lalmai anticline in Comilla image the now tilted Holocene-Pleistocene clay layer. Additional lines along the subsurface continuation of the anticline provide additional information on the subsurface lithologies associated with the complex interplay of fluvial dynamics and active tectonics. We will present the latest images and interpretations.

Subsurface geology of the late Tertiary and Quaternary water-bearing deposits of the southern part of the San Joaquin Valley, California

USGS Publications Warehouse

Croft, M.G.

1972-01-01

The study area, which includes about 5,000 square miles of the southern part of the San Joaquin Valley, is a broad structural trough of mostly interior drainage. The Sierra Nevada on the east is composed of consolidated igneous and metamorphic rocks of pre-Tertiary age. The surface of these rocks slopes 4?-6? southwestward from the foothills and underlies the valley. The Coast Ranges on the west consist mostly of complexly folded and faulted consolidated marine and nonmarine sedimentary rocks of Jurassic, Cretaceous, and Tertiary age, which dip eastward and overlie the basement complex. Unconsolidated deposits, of late Pliocene to Holocene age, blanket the underlying consolidated rocks in the valley and are the source of most of the fresh ground water. The unconsolidated deposits, the subject of this report, are divided into informal stratigraphic units on the basis of source of sediment, environment of deposition, and texture. Flood-basin, lacustrine, and marsh deposits are fine grained and underlie the valley trough. They range in age from late Pliocene to Holocene. These deposits, consisting of nearly impermeable gypsiferous fine sand, silt, and clay, are more than 3,000 feet thick beneath parts of Tulare Lake bed. In other parts of the trough, flood-basin, lacustrine, and marsh deposits branch into clayey or silty clay tongues designated by the letter symbols A to F. Three of these tongues, the E, C, and A clays, lie beneath large areas of the southern part of the valley. The E clay includes the Corcoran Clay Member of the Tulare Formation, the most extensive hydrologic confining layer in the valley. The E clay underlies about 3,500 square miles of bottom land and western slopes. The beds generally are dark-greenish-gray mostly diatomaceous silty clay of Pleistocene age. Marginally, the unit bifurcates into an upper and a lower stratum that contains thin beds of moderately yellowish-brown silt and sand. The E clay is warped into broad, gentle northwesterly trending anticlines and synclines. The C clay, of Pleistocene age, is a fine-grained lacustrine or paludal deposit occurring 220-300 feet beneath Tulare Lake bed and parts of Fresno Slough. The beds consist of bluish-gray silty clay. Structural contours indicate that the C clay has been extensively warped and folded. The A clay of Pleistocene and Holocene (?) age is a fine-grained lacustrine or paludal deposit occurring 10-60 feet beneath Buena Vista, Kern, and Tulare Lake beds, and parts of Fresno Slough. The clay is mainly blue or dark greenish gray, plastic, and highly organic. In some areas the unit is separated into an upper and a lower stratum by several feet of sand. A radiocarbon date of 26,780 ? 600 years was obtained from wood cored 3 feet beneath the clay. Continental deposits are arkosic beds of late Pliocene and Pleistocene (?) age and were derived from the Sierra Nevada, Tehachapi, and San Emigdio Mountains. In places, a reduced-oxidized contact transgresses the deposits derived from the Sierra Nevada. The reduced deposits consist of moderately permeable bluish-green or bluish-gray fine to medium sand, silt, and clay. The oxidized deposits consist mainly of poorly permeable yellowish-brown silt and fine sand. Deposits derived from the Tehachapi and the San Emigdio Mountains consist of poorly to moderately permeable yellowish-brown sand and silt. Continental and alluvial deposits of Tertiary and Quaternary age that were derived from the Coast Ranges consist mainly of poorly to moderately permeable yellowish-brown gravel, sand, silt, and clay. They include the Tulare Formation and overlying alluvial deposits. Alluvium is composed of coarse arkosic deposits derived from the Sierra Nevada, Tehachapi, and San Emigdio Mountains. A reduced-oxidized contact also transgresses the alluvial deposits derived from the Sierra Nevada. The oxidized deposits consist of poorly to highly permeable yellowish-brown gravel, sand, silt, and clay. The reduc

Enhanced cellular preservation by clay minerals in 1 billion-year-old lakes.

PubMed

Wacey, David; Saunders, Martin; Roberts, Malcolm; Menon, Sarath; Green, Leonard; Kong, Charlie; Culwick, Timothy; Strother, Paul; Brasier, Martin D

2014-07-28

Organic-walled microfossils provide the best insights into the composition and evolution of the biosphere through the first 80 percent of Earth history. The mechanism of microfossil preservation affects the quality of biological information retained and informs understanding of early Earth palaeo-environments. We here show that 1 billion-year-old microfossils from the non-marine Torridon Group are remarkably preserved by a combination of clay minerals and phosphate, with clay minerals providing the highest fidelity of preservation. Fe-rich clay mostly occurs in narrow zones in contact with cellular material and is interpreted as an early microbially-mediated phase enclosing and replacing the most labile biological material. K-rich clay occurs within and exterior to cell envelopes, forming where the supply of Fe had been exhausted. Clay minerals inter-finger with calcium phosphate that co-precipitated with the clays in the sub-oxic zone of the lake sediments. This type of preservation was favoured in sulfate-poor environments where Fe-silicate precipitation could outcompete Fe-sulfide formation. This work shows that clay minerals can provide an exceptionally high fidelity of microfossil preservation and extends the known geological range of this fossilization style by almost 500 Ma. It also suggests that the best-preserved microfossils of this time may be found in low-sulfate environments.

Enhanced cellular preservation by clay minerals in 1 billion-year-old lakes

PubMed Central

Wacey, David; Saunders, Martin; Roberts, Malcolm; Menon, Sarath; Green, Leonard; Kong, Charlie; Culwick, Timothy; Strother, Paul; Brasier, Martin D.

2014-01-01

Organic-walled microfossils provide the best insights into the composition and evolution of the biosphere through the first 80 percent of Earth history. The mechanism of microfossil preservation affects the quality of biological information retained and informs understanding of early Earth palaeo-environments. We here show that 1 billion-year-old microfossils from the non-marine Torridon Group are remarkably preserved by a combination of clay minerals and phosphate, with clay minerals providing the highest fidelity of preservation. Fe-rich clay mostly occurs in narrow zones in contact with cellular material and is interpreted as an early microbially-mediated phase enclosing and replacing the most labile biological material. K-rich clay occurs within and exterior to cell envelopes, forming where the supply of Fe had been exhausted. Clay minerals inter-finger with calcium phosphate that co-precipitated with the clays in the sub-oxic zone of the lake sediments. This type of preservation was favoured in sulfate-poor environments where Fe-silicate precipitation could outcompete Fe-sulfide formation. This work shows that clay minerals can provide an exceptionally high fidelity of microfossil preservation and extends the known geological range of this fossilization style by almost 500 Ma. It also suggests that the best-preserved microfossils of this time may be found in low-sulfate environments. PMID:25068404

Microbial potential for carbon and nutrient cycling in a geogenic supercritical carbon dioxide reservoir: Microbial life in the deep carbonated biosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freedman, Adam J. E.; Tan, BoonFei; Thompson, Janelle R.

Microorganisms catalyze carbon cycling and biogeochemical reactions in the deep subsurface and thus may be expected to influence the fate of injected super-critical (sc) CO 2 following geological carbon sequestration (GCS). We hypothesized that natural subsurface scCO 2 reservoirs, which serve as analogs for the long-term fate of sequestered scCO 2 harbor a ‘deep carbonated biosphere’ with carbon cycling potential. We sampled subsurface fluids from scCO 2- water separators at a natural scCO 2 reservoir at McElmo Dome, Colorado for analysis of 16S rRNA gene diversity and metagenome content. Sequence annotations indicated dominance of Sulfurospirillum, Rhizobium, Desulfovibrio and four membersmore » of the Clostridiales family. Genomes extracted from metagenomes using homology and compositional approaches revealed diverse mechanisms for growth and nutrient cycling, including pathways for CO 2 and N 2 fixation, anaerobic respiration, sulfur oxidation, fermentation and potential for metabolic syntrophy. Differences in biogeochemical potential between two production well communities were consistent with differences in fluid chemical profiles, suggesting a potential link between microbial activity and geochemistry. In conclusion, the existence of a microbial ecosystem associated with the McElmo Dome scCO 2 reservoir indicates that potential impacts of the deep biosphere on CO 2 fate and transport should be taken into consideration as a component of GCS planning and modelling.« less

Microbial potential for carbon and nutrient cycling in a geogenic supercritical carbon dioxide reservoir: Microbial life in the deep carbonated biosphere

DOE PAGES

Freedman, Adam J. E.; Tan, BoonFei; Thompson, Janelle R.

2017-05-02

Microorganisms catalyze carbon cycling and biogeochemical reactions in the deep subsurface and thus may be expected to influence the fate of injected super-critical (sc) CO 2 following geological carbon sequestration (GCS). We hypothesized that natural subsurface scCO 2 reservoirs, which serve as analogs for the long-term fate of sequestered scCO 2 harbor a ‘deep carbonated biosphere’ with carbon cycling potential. We sampled subsurface fluids from scCO 2- water separators at a natural scCO 2 reservoir at McElmo Dome, Colorado for analysis of 16S rRNA gene diversity and metagenome content. Sequence annotations indicated dominance of Sulfurospirillum, Rhizobium, Desulfovibrio and four membersmore » of the Clostridiales family. Genomes extracted from metagenomes using homology and compositional approaches revealed diverse mechanisms for growth and nutrient cycling, including pathways for CO 2 and N 2 fixation, anaerobic respiration, sulfur oxidation, fermentation and potential for metabolic syntrophy. Differences in biogeochemical potential between two production well communities were consistent with differences in fluid chemical profiles, suggesting a potential link between microbial activity and geochemistry. In conclusion, the existence of a microbial ecosystem associated with the McElmo Dome scCO 2 reservoir indicates that potential impacts of the deep biosphere on CO 2 fate and transport should be taken into consideration as a component of GCS planning and modelling.« less

Geohydrology of the High Energy Laser System Test Facility site, White Sands Missile Range, Tularosa Basin, south-central New Mexico

USGS Publications Warehouse

Basabilvazo, G.T.; Nickerson, E.L.; Myers, R.G.

1994-01-01

The Yesum-HoHoman and Gypsum land (hummocky) soils at the High Energy Laser System Test Facility (HELSTF) represent wind deposits from recently desiccated lacustrine deposits and deposits from the ancestral Lake Otero. The upper 15-20 feet of the subsurface consists of varved gypsiferous clay and silt. Below these surfidai deposits the lithology consists of interbedded clay units, silty-clay units, and fine- to medium-grained quartz arenite units in continuous and discontinuous horizons. Clay horizons can cause perched water above the water table. Analyses of selected clay samples indicate that clay units are composed chiefly of kaolinire and mixed-layer illite/ smectite. The main aquifer is representative of a leaky-confined aquifer. Estimated aquifer properties are: transmissivity (T) = 780 feet squared per day, storage coefficient (S) = 3.1 x 10-3, and hydraulic conductivity (K) = 6.0 feet per day. Ground water flows south and southwest; the estimated hydraulic gradient is 5.3 feet per mile. Analyses of water samples indicate that ground water at the HELSTF site is brackish to slightly saline at the top of the main aquifer. Dissolved-solids concentration near the top of the main aquifer ranges from 5,940 to 11,800 milligrams per liter. Predominant ions are sodium and sulfate. At 815 feet below land surface, the largest dissolved-solids concentration measured is 111,000 milligrams per liter, which indicates increasing salinity with depth. Predominant ions are sodium and chloride.

Characterization of fly ash ceramic pellet for phosphorus removal.

PubMed

Li, Shiyang; Cooke, Richard A; Wang, Li; Ma, Fang; Bhattarai, Rabin

2017-03-15

Phosphorus has been recognized as a leading pollutant for surface water quality deterioration. In the Midwestern USA, subsurface drainage not only provides a pathway for excess water to leave the field but it also drains out nutrients like nitrogen (N) and phosphorus (P). Fly ash has been identified as one of the viable materials for phosphorus removal from contaminated waters. In this study, a ceramic pellet was manufactured using fly ash for P absorption. Three types of pellet with varying lime and clay proportions by weight (type 1: 10% lime + 30% clay, type 2: 20% lime + 20% clay, and type 3: 30% lime + 10% clay) were characterized and evaluated for absorption efficiency. The result showed that type 3 pellet (60% fly ash with 30% lime and 10% clay) had the highest porosity (14%) and absorption efficiency and saturated absorption capacity (1.98 mg P/g pellet) compared to type 1 and 2 pellets. The heavy metal leaching was the least (30 μg/L of chromium after 5 h) for type 3 pellet compared to other two. The microcosmic structure of pellet from scanning electron microscope showed the type 3 pellet had the better distribution of aluminum and iron oxide on the surface compared other two pellets. This result indicates that addition of lime and clay can improve P absorption capacity of fly ash while reducing the potential to reduce chromium leaching. Copyright © 2016 Elsevier Ltd. All rights reserved.

An experimental study of the effects of adsorbing and non-adsorbing gases on friction and permeability evolution in clay-rich fault gouge

NASA Astrophysics Data System (ADS)

Lisabeth, H. P.; Zoback, M. D.

2017-12-01

Understanding the flow of fluids through fractures in clay-rich rocks is fundamental to a number of geoengineering enterprises, including development of unconventional hydrocarbon resources, nuclear waste storage and geological carbon sequestration. High clay content tends to make rocks plastic, low-porosity and anisotropic. In addition, some gasses adsorb to clay mineral surfaces, resulting in swelling and concomitant changes in physical properties. These complexities can lead to coupled behaviors that render prediction of fluid behavior in the subsurface difficult. We present the results of a suite of triaxial experiments on binary mixtures of quartz and illite grains to separate and quantify the effects of hydrostatic pressure, differential stress, clay content and gas chemistry on the evolution of mechanical and hydraulic characteristics of the gouge material during deformation. Tests are run on saw-cut samples prepared with gouge at 20 MPa confining pressure, 10 MPa pore pressure and at room temperature. Argon or carbon dioxide is used as pore fluid. Sample permeability, stress and strain are monitored continuously during hydrostatic and axial deformation. We find that pressure and shearing both lead to reductions in permeability. Adsorbing gas leads to swelling and promotes permeability reduction, but appears to have no effect on frictional properties. These results indicate that the seal integrity of clay-rich caprocks may not be compromised by shear deformation, and that depletion and shear deformation of unconventional reservoirs is expected to result in production declines.

Sensitive strata in Bootlegger Cove Formation

USGS Publications Warehouse

Olsen, Harold W.

1989-01-01

Sensitivity magnitudes are interpreted from remolded strength values in recent subsurface geologic, geotechnical, and geochemical data from the Bootlegger Cove Formation adjacent to the Turnagain Heights Landslide. The results show that strata composed of highly sensitive clays occur in both the middle and lower zones of the formation, and that between these strata the clays are generally of low-to-medium sensitivity. The most sensitive stratum is in the middle zone between two sand layers, and its sensitivity increases from both clay-sand interfaces to a maximum at the center of the stratum. The pore fluid chemistry of the highly sensitive materials differs from that in the materials of low to medium sensitivity only in their concentrations of organic carbon, chloride, bicarbonate, and sulfate. The total dissolved solids concentration is low, and the ratio of monovalent to divalent cations is very high throughout the middle and lower zones of the formation. Of the known causes of high and extremely high sensitivities, only organic and/or anionic dispersants are consistent with these findings.

Low-temperature, mineral-catalyzed air oxidation: a possible new pathway for PAH stabilization in sediments and soils.

PubMed

Ghislain, Thierry; Faure, Pierre; Biache, Coralie; Michels, Raymond

2010-11-15

Reactivity of polycyclic aromatic hydrocarbons (PAHs) in the subsurface is of importance to environmental assessment, as they constitute a highly toxic hazard. Understanding their reactivity in the long term in natural recovering systems is thus a key issue. This article describes an experimental investigation on the air oxidation of fluoranthene (a PAH abundant in natural systems polluted by industrial coal use) at 100°C on different mineral substrates commonly found in soils and sediments (quartz sand, limestone, and clay). Results demonstrate that fluoranthene is readily oxidized in the presence of limestone and clay, leading to the formation of high molecular weight compounds and a carbonaceous residue as end product especially for clay experiments. As demonstrated elsewhere, the experimental conditions used permitted the reproduction of the geochemical pathway of organic matter observed under natural conditions. It is therefore suggested that low-temperature, mineral-catalyzed air oxidation is a mechanism relevant to the stabilization of PAHs in sediments and soils.

Mineralogy of Cretaceous/Tertiary boundary clays in the Chicxulub structure in northern Yucatan

NASA Technical Reports Server (NTRS)

Ming, D. W.; Sharpton, Virgil L.; Schuraytz, B. C.

1991-01-01

The Cretaceous/Tertiary (K/T) boundary clay layer is thought to be derived from ejecta material from meteorite impact, based on the anomalous concentrations of noble metals in the layer. Because of recent findings of a half-meter thick ejecta deposit at the K/T boundary in Haiti, efforts have focused on locating a large impact feature in the Caribbean and the Gulf of Mexico. One of the leading candidates for the site of a large impact is the Chicxulub structure located on the northern Yucatan Peninsula in Mexico. The Chicxulub structure is a subsurface zone of upper Cretaceous igneous rocks, carbonates, and breccias. The structure has been interpreted to be a 200 km diameter; however, there is some question to the size of the structure or to the fact that it even is an impact feature. Little is known about the mineralogy of this structure; the objective of this study was to determine the clay mineralogy of core samples from within the Chicxulub structure.

Adsorption of bacteriophages on clay minerals

USGS Publications Warehouse

Chattopadhyay, Sandip; Puls, Robert W.

1999-01-01

The ability to predict the fate of microorganisms in soil is dependent on an understanding of the process of their sorption on soil and subsurface materials. Presently, we have focused on studying the thermodynamics of sorption of bacteriophages (T-2, MS-2, and φX-174) on clays (hectorite, saponite, kaolinite, and clay fraction of samples collected from a landfill site). The thermodynamic study not only determines the feasibility of the process but also provides information on the relative magnitudes of the different forces under a particular set of conditions. The total free energy of interaction during sorption of bacteriophages on clays (ΔG) has been assumed to be the summation of ΔGH (ΔG due to hydrophobic interactions) and ΔGEL (ΔG due to electrostatic interactions). The magnitude of ΔGH was determined from the different interfacial tensions (γ) present in the system, while ΔGEL was calculated from ζ-potentials of the colloidal particles. Calculated results show that surface hydrophobicities of the selected sorbents and sorbates dictate sorption. Among the selected bacteriophages, maximum sorption was observed with T-2, while hectorite has the maximum sorption capacity. Experimental results obtained from the batch adsorption studies also corroborated those obtained from the theoretical study.

A case study on stratified settlement and rebound characteristics due to dewatering in Shanghai subway station.

PubMed

Wang, Jianxiu; Huang, Tianrong; Sui, Dongchang

2013-01-01

Based on the Yishan Metro Station Project of Shanghai Metro Line number 9, a centrifugal model test was conducted to investigate the behavior of stratified settlement and rebound (SSR) of Shanghai soft clay caused by dewatering in deep subway station pit. The soil model was composed of three layers, and the dewatering process was simulated by self-invention of decompressing devise. The results indicate that SSR occurs when the decompression was carried out, and only negative rebound was found in sandy clay, but both positive and negative rebound occurred in the silty clay, and the absolute value of rebound in sandy clay was larger than in silty clay, and the mechanism of SSR was discussed with mechanical sandwich model, and it was found that the load and cohesive force of different soils was the main source of different responses when decompressed.

A Case Study on Stratified Settlement and Rebound Characteristics due to Dewatering in Shanghai Subway Station

PubMed Central

Wang, Jianxiu; Huang, Tianrong; Sui, Dongchang

2013-01-01

Based on the Yishan Metro Station Project of Shanghai Metro Line number 9, a centrifugal model test was conducted to investigate the behavior of stratified settlement and rebound (SSR) of Shanghai soft clay caused by dewatering in deep subway station pit. The soil model was composed of three layers, and the dewatering process was simulated by self-invention of decompressing devise. The results indicate that SSR occurs when the decompression was carried out, and only negative rebound was found in sandy clay, but both positive and negative rebound occurred in the silty clay, and the absolute value of rebound in sandy clay was larger than in silty clay, and the mechanism of SSR was discussed with mechanical sandwich model, and it was found that the load and cohesive force of different soils was the main source of different responses when decompressed. PMID:23878521

Modeling Phosphorus Losses through Surface Runoff and Subsurface Drainage Using ICECREAM.

PubMed

Qi, Hongkai; Qi, Zhiming; Zhang, T Q; Tan, C S; Sadhukhan, Debasis

2018-03-01

Modeling soil phosphorus (P) losses by surface and subsurface flow pathways is essential in developing successful strategies for P pollution control. We used the ICECREAM model to simultaneously simulate P losses in surface and subsurface flow, as well as to assess effectiveness of field practices in reducing P losses. Monitoring data from a mineral-P-fertilized clay loam field in southwestern Ontario, Canada, were used for calibration and validation. After careful adjustment of model parameters, ICECREAM was shown to satisfactorily simulate all major processes of surface and subsurface P losses. When the calibrated model was used to assess tillage and fertilizer management scenarios, results point to a 10% reduction in total P losses by shifting autumn tillage to spring, and a 25.4% reduction in total P losses by injecting fertilizer rather than broadcasting. Although the ICECREAM model was effective in simulating surface and subsurface P losses when thoroughly calibrated, further testing is needed to confirm these results with manure P application. As illustrated here, successful use of simulation models requires careful verification of model routines and comprehensive calibration to ensure that site-specific processes are accurately represented. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Ground-Water Geology and Hydrology of the Kern River Alluvial-Fan Area, California

USGS Publications Warehouse

Dale, R.H.; French, James J.; Gordon, G.V.

1966-01-01

The Kern River alluvial fan is the southernmost major alluvial fan built by the streams which drain the west side of the Sierra Nevada. The climate is semiarid with rainfall near 5 inches per year. Agricultural development within the area uses over half the 700,000 acre-feet per year flow of the Kern River, plus a considerable amount drawn from the ground-water reservoir particularly during periods of low flow. The area overlies a deep structural trough between crystalline rocks of the Sierra Nevada and the marine rocks of Tertiary age of the Coast Ranges. The top horizon of the marine rocks that lap on the Sierra Nevada block underlies the report area at an average depth of 2,000 feet. The overlying continental deposits that form the groundwater reservoir consist of alluvial-fan and lacustrine deposits. The continental deposits are subdivided into three lithologic units on the basis of grain size and sorting. The gravel and clay unit consists of older alluvial-fan material, of both Sierra Nevada and Coast Range provenance, that shows extremely poor sorting with some diagenetic decomposition through chemical weathering. The fine sand to clay unit consists principally of fine sand, silt, and clay deposited in a lacustrine environment, although some of the unit is of alluvial-fan origin derived from poorly consolidated marine shale of the Coast Ranges. Within the fine sand to clay unit three distinct clays, which affect ground-water conditions, can be recognized. The gravel to medium sand unit consists of unweathered alluvial-fan material that shows much better sorting than the gravel and clay unit. In the eastern part of the area the basal part of this unit is a gravel lentil that can be traced in the subsurface more than 250 square miles. The overlying deposits consist principally of medium sand. In the western part of the area the unit is a heterogeneous gravel and sand unit. Permeability in Meinzer units of the gravel and clay unit ranges between 10 and 100 with specific yield about 5 percent. For the fine sand to clay unit the permeability ranges between 0.0001 and 100 with about 10 percent specific yield. The gravel to medium sand unit has permeabilities between 100 and 10,000, and specific yield is about 15 percent. For the period 1955-59 the annual gross surface-water supply was estimated at 421,000 acre-feet and pumpage was 664,000 acre-feet, giving a rounded total supply of 1,100,000 acre-feet. Annual consumptive use was estimated at 750,000 acre-feet and annual infiltration at 350,000 acre-feet. The approximate 300,000 acre-feet difference between 664,000 acre-feet pumped and 350,000 acre-feet infiltrated has caused an annual decline in water levels of up to 7 feet. Ground water occurs under both unconfined and confined conditions within the report area. In general, the gravel to medium sand unit contains unconfined water, and the other two units contain confined water. Pumping is less intense in the Kern River fan area than in the adjoining areas to the north or south. This fact, plus infiltration from the Kern River, results in ground-water movement being principally out of the area. There is a ground-water divide that approximately underlies the Kern River. South of the river the flow spreads out semicircularly from the river, and north of the river the flow is linear to the northwest. Based on chemical quality the ground water has been divided areally into (1) east side, (2) west side, and (3) axial water. With the exception of two areas of comparable size northwest of Bakersfield and a much smaller area southeast of that city where ground water is somewhat saline, east-side ground water is generally of the calcium bicarbonate and calcium sodium bicarbonate type of low to medium salinity. The chemical character of east-side ground water is necessarily related to that of Kern River water, the principal source of recharge, and water of intermittent streams which drain the dissected upland

Assessment of brine migration along vertical pathways due to CO2 injection

NASA Astrophysics Data System (ADS)

Kissinger, Alexander; Class, Holger

2016-04-01

Global climate change, shortage of resources and the growing usage of renewable energy sources has lead to a growing demand for the utilization of subsurface systems which may create conflicts with essential public interests such as water supply from aquifers. For example, brine migration into potential drinking water aquifers due to the injection of CO2 into deep saline aquifers is perceived as a potential threat resulting from the Carbon Capture and Storage Technology (CCS). In this work, we focus on the large scale impacts of CO2 storage on brine migration but the methodology and the obtained results may also apply to other fields like waste water disposal, where large amounts of fluid are injected into the subsurface. We consider a realistic (but not real) on-shore site in the North German Basin with characteristic geological features. In contrast to modeling on the reservoir scale, the spatial scale in this work is much larger in both vertical and lateral direction, since the regional hydrogeology is considered as well. Structures such as fault zones, hydrogeological windows in the Rupelian clay or salt wall flanks are considered as potential pathways for displaced fluids into shallow systems and their influence needs to be taken into account. Simulations on this scale always require a compromise between the accuracy of the description of the relevant physical processes, data availability and computational resources. Therefore, we test different model simplifications and discuss them with respect to the relevant physical processes and the expected data availability. The simplifications in the models are concerned with the role of salt-induced density differences on the flow, with injection of brine (into brine) instead of CO2 into brine, and with simplifying the geometry of the site.

Effect of subalpine canopy removal on snowpack, soil solution, and nutrient export, Fraser Experimental Forest, CO

USGS Publications Warehouse

Stottlemyer, R.; Troendle, C.A.

1999-01-01

Research on the effects of vegetation manipulation on snowpack, soil water, and streamwater chemistry and flux has been underway at the Fraser Experimental Forest (FEF), CO, since 1982. Greater than 95% of FEF snowmelt passes through watersheds as subsurface flow where soil processes significantly alter meltwater chemistry. To better understand the mechanisms accounting for annual variation in watershed streamwater ion concentration and flux with snowmelt, we studied subsurface water flow, its ion concentration, and flux in conterminous forested and clear cut plots. Repetitive patterns in subsurface flow and chemistry were apparent. Control plot subsurface flow chemistry had the highest ion concentrations in late winter and fall. When shallow subsurface flow occurred, its Ca2+, SO42-, and HCO3- concentrations were lower and K+ higher than deep flow. The percentage of Ca2+, NO3-, SO42-, and HCO3- flux in shallow depths was less and K+ slightly greater than the percentage of total flow. Canopy removal increased precipitation reaching the forest floor by about 40%, increased peak snowpack water equivalent (SWE) > 35%, increased the average snowpack Ca2+, NO3-, and NH4+ content, reduced the snowpack K+ content, and increased the runoff four-fold. Clear cutting doubled the percentage of subsurface flow at shallow depths, and increased K+ concentration in shallow subsurface flow and NO3- concentrations in both shallow and deep flow. The percentage change in total Ca2+, SO42-, and HCO3- flux in shallow depths was less than the change in water flux, while that of K+ and NO3- flux was greater. Relative to the control, in the clear cut the percentage of total Ca2+ flux at shallow depths increased from 5 to 12%, SO42- 5.4 to 12%, HCO3- from 5.6 to 8.7%, K+ from 6 to 35%, and NO3- from 2.7 to 17%. The increases in Ca2+ and SO42- flux were proportional to the increase in water flux, the flux of HCO3- increased proportionally less than water flux, and NO3- and K+ were proportionally greater than water flux. Increased subsurface flow accounted for most of the increase in non-limiting nutrient loss. For limiting nutrients, loss of plant uptake and increased shallow subsurface flow accounted for the greater loss. Seasonal ion concentration patterns in streamwater and subsurface flow were similar.Research on the effects of vegetation manipulation on snowpack, soil water, and streamwater chemistry and flux has been underway at the Fraser Experimental Forest (FEF), CO, since 1982. Greater than 95% of FEF snowmelt passes through watersheds as subsurface flow where soil processes significantly alter meltwater chemistry. To better understand the mechanisms accounting for annual variation in watershed streamwater ion concentration and flux with snowmelt, we studied subsurface water flow, its ion concentration, and flux in conterminous forested and clear cut plots. Repetitive patterns in subsurface flow and chemistry were apparent. Control plot subsurface flow chemistry had the highest ion concentrations in late winter and fall. When shallow subsurface flow occurred, its Ca2+, SO42-, and HCO3- concentrations were lower and K+ higher than deep flow. The percentage of Ca2+, NO3-, SO42-, and HCO3- flux in shallow depths was less and K+ slightly greater than the percentage of total flow. Canopy removal increased precipitation reaching the forest floor by about 40%, increased peak snowpack water equivalent (SWE) > 35%, increased the average snowpack Ca2+, NO3-, and NH4+ content, reduced the snowpack K+ content, and increased the runoff four-fold. Clear cutting doubled the percentage of subsurface flow at shallow depths, and increased K+ concentration in shallow subsurface flow and NO3- concentrations in both shallow and deep flow. The percentage change in total Ca2+, SO42-, and HCO3- flux in shallow depths was less than the change in water flux, while that of K+ and NO3- flux was greater. Relative to the control, in the clear cut the percentage of total Ca

Thermal Impact of Medium Deep Borehole Thermal Energy Storage on the Shallow Subsurface

NASA Astrophysics Data System (ADS)

Welsch, Bastian; Schulte, Daniel O.; Rühaak, Wolfram; Bär, Kristian; Sass, Ingo

2017-04-01

Borehole heat exchanger arrays are a well-suited and already widely applied method for exploiting the shallow subsurface as seasonal heat storage. However, in most of the populated regions the shallow subsurface also comprises an important aquifer system used for drinking water production. Thus, the operation of shallow geothermal heat storage systems leads to a significant increase in groundwater temperatures in the proximity of the borehole heat exchanger array. The magnitude of the impact on groundwater quality and microbiology associated with this temperature rise is controversially discussed. Nevertheless, the protection of shallow groundwater resources has priority. Accordingly, water authorities often follow restrictive permission policies for building such storage systems. An alternative approach to avoid this issue is the application of medium deep borehole heat exchanger arrays instead of shallow ones. The thermal impact on shallow aquifers can be significantly reduced as heat is stored at larger depth. Moreover, it can be further diminished by the installation of a thermally insulating materials in the upper section of the borehole heat exchangers. Based on a numerical simulation study, the advantageous effects of medium deep borehole thermal energy storage are demonstrated and quantified. A finite element software is used to model the heat transport in the subsurface in 3D, while the heat transport in the borehole heat exchangers is solved analytically in 1D. For this purpose, an extended analytical solution is implemented, which also allows for the consideration of a thermally insulating borehole section.

Subsurface dolomite formation during post-depositional flow of sulphate-bearing fluids from underlying salt giants: Early Pliocene example at DSDP Leg 42A, Site 374, Ionian Abyssal Plain

NASA Astrophysics Data System (ADS)

McKenzie, Judith A.; Evans, Nick; Hodell, David; Aloisi, Giovanni; Vasconcelos, Crisogono

2017-04-01

Deciphering exact mechanisms for the formation of massive dolomite deposits has long been an enigma in sedimentary geology. The recognition that microbes can play a role in the dolomite precipitation process has added a new dimension to the study of the origin of dolomite formations in both shallow and deep-water environments. This scientific advance has evolved, particularly, through the investigation of dolomite-containing, organic-rich hemipelagic sediments cored on various continental margins during DSDP and ODP drilling campaigns, as well as intensive evaluations of modern hypersaline dolomite-precipitating environments with complementary culture experiments conducted in the laboratory. For example, the association of an active subsurface microbial community in contact with underlying brines of unknown origin leading to in situ dolomite precipitation has been observed in a Quaternary sequence of hemi-pelagic, organic carbon-rich sediments drilled on the Peru Margin, ODP Leg 201, Site 1229 (1). Specifically, it can be concluded that the long-term activity of subsurface microbes can be maintained by post-depositional flow of sulfate-bearing fluids from underlying large-scale evaporite deposits, or salt giants, promoting in situ dolomite precipitation. Another example of dolomite precipitation directly associated with the underlying Messinian salt giant was found at DSDP Leg 42A, Site 374 in the Ionian Abyssal Plain. Deep-sea drilling recovered a lowermost Pliocene sequence of diagenetically altered sediment (Unit II) separating the overlying Pliocene open-marine deposits (Unit I) and the underlying end Messinian dolomitic mudstone with gypsum layers (Unit III). The lower portion of this altered interval contained in Core 11, Section 2 (378.0 - 381.5 mbsf) comprises a dolomicrite with an unusual crystal morphology (2). The original interstitial water geochemical profiles indicate that a saline brine is diffusing upwards from below and into the dolomicrite sequence. There appears to be on-going bacterial sulfate reduction in this boundary zone between the evaporitic and normal pelagic sediments with a significant decrease in sulfate concentrations, whereas the chloride profile remains constant. It was concluded that the earliest Pliocene marine sediments of Unit II had been dolomitized after burial as a consequence of ionic migration across a steep Mg-concentration gradient (3). However, with the addition of a microbial factor into the study of the dolomite precipitation process, an alternate interpretation is possible. We propose that, at the location of DSDP Leg 42A, Site 374, modern subsurface dolomite precipitation is ongoing and the site is a "natural laboratory" in which to investigate the microbial phenomenon in the context of a giant evaporite deposit. This actualistic example may provide a new model for the origin of massive dolomite deposits associated with other salt giants in the rock record. (1) Meister, P., et al., 2007. Sedimentology, 54, 1007-1031. (2) Bernoulli, D. & Mélières, F., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 621-633. (3) McDuff, R.E., et al., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 561-568.

Isolation of Geobacter species from diverse sedimentary environments

USGS Publications Warehouse

Coaxes, J.D.; Phillips, E.J.P.; Lonergan, D.J.; Jenter, H.; Lovley, D.R.

1996-01-01

In an attempt to better understand the microorganisms responsible for Fe(III) reduction in sedimentary environments, Fe(III)-reducing microorganisms were enriched for and isolated from freshwater aquatic sediments, a pristine deep aquifer, and a petroleum-contaminated shallow aquifer. Enrichments were initiated with acetate or toluene as the electron donor and Fe(III) as the electron acceptor. Isolations were made with acetate or benzoate. Five new strains which could obtain energy for growth by dissimilatory Fe(III) reduction were isolated. All five isolates are gram- negative strict anaerobes which grow with acetate as the electron donor and Fe(III) as the electron acceptor. Analysis of the 16S rRNA sequence of the isolated organisms demonstrated that they all belonged to the genus Geobacter in the delta subdivision of the Proteobacteria. Unlike the type strain, Geobacter metallireducens, three of the five isolates could use H2 as an electron donor fur Fe(III) reduction. The deep subsurface isolate is the first Fe(III) reducer shown to completely oxidize lactate to carbon dioxide, while one of the freshwater sediment isolates is only the second Fe(III) reducer known that can oxidize toluene. The isolation of these organisms demonstrates that Geobacter species are widely distributed in a diversity of sedimentary environments in which Fe(III) reduction is an important process.

The depositional setting of the Late Quaternary sedimentary fill in southern Bannu basin, Northwest Himalayan fold and thrust belt, Pakistan.

PubMed

Farid, Asam; Khalid, Perveiz; Jadoon, Khan Zaib; Jouini, Mohammed Soufiane

2014-10-01

Geostatistical variogram and inversion techniques combined with modern visualization tools have made it possible to re-model one-dimensional electrical resistivity data into two-dimensional (2D) models of the near subsurface. The resultant models are capable of extending the original interpretation of the data to depict alluvium layers as individual lithological units within the 2D space. By tuning the variogram parameters used in this approach, it is then possible to visualize individual lithofacies and geomorphological features for these lithologic units. The study re-examines an electrical resistivity dataset collected as part of a groundwater study in an area of the Bannu basin in Pakistan. Additional lithological logs from boreholes throughout the area have been combined with the existing resistivity data for calibration. Tectonic activity during the Himalayan orogeny uplifted and generated significant faulting in the rocks resulting in the formation of a depression which subsequently has been filled with clay-silt and dirty sand facies typical of lacustrine and flood plain environments. Streams arising from adjacent mountains have reworked these facies which have been eroded and replaced by gravel-sand facies along channels. It is concluded that the sediments have been deposited as prograding fan shaped bodies, flood plain, and lacustrine deposits. Clay-silt facies mark the locations of paleo depressions or lake environments, which have changed position over time due to local tectonic activity and sedimentation. The Lakki plain alluvial system has thus formed as a result of local tectonic activity with fluvial erosion and deposition characterized by coarse sediments with high electrical resistivities near the mountain ranges and fine sediments with medium to low electrical resistivities towards the basin center.

Microbiological and Geochemical Survey of CO2-Dominated Mofette and Mineral Waters of the Cheb Basin, Czech Republic.

PubMed

Krauze, Patryk; Kämpf, Horst; Horn, Fabian; Liu, Qi; Voropaev, Andrey; Wagner, Dirk; Alawi, Mashal

2017-01-01

The Cheb Basin (NW Bohemia, Czech Republic) is a shallow, neogene intracontinental basin. It is a non-volcanic region which features frequent earthquake swarms and large-scale diffuse degassing of mantle-derived CO 2 at the surface that occurs in the form of CO 2 -rich mineral springs and wet and dry mofettes. So far, the influence of CO 2 degassing onto the microbial communities has been studied for soil environments, but not for aquatic systems. We hypothesized, that deep-trenching CO 2 conduits interconnect the subsurface with the surface. This admixture of deep thermal fluids should be reflected in geochemical parameters and in the microbial community compositions. In the present study four mineral water springs and two wet mofettes were investigated through an interdisciplinary survey. The waters were acidic and differed in terms of organic carbon and anion/cation concentrations. Element geochemical and isotope analyses of fluid components were used to verify the origin of the fluids. Prokaryotic communities were characterized through quantitative PCR and Illumina 16S rRNA gene sequencing. Putative chemolithotrophic, anaerobic and microaerophilic organisms connected to sulfur (e.g., Sulfuricurvum, Sulfurimonas ) and iron (e.g., Gallionella, Sideroxydans ) cycling shaped the core community. Additionally, CO 2 -influenced waters form an ecosystem containing many taxa that are usually found in marine or terrestrial subsurface ecosystems. Multivariate statistics highlighted the influence of environmental parameters such as pH, Fe 2+ concentration and conductivity on species distribution. The hydrochemical and microbiological survey introduces a new perspective on mofettes. Our results support that mofettes are either analogs or rather windows into the deep biosphere and furthermore enable access to deeply buried paleo-sediments.

Microbiological and Geochemical Survey of CO2-Dominated Mofette and Mineral Waters of the Cheb Basin, Czech Republic

PubMed Central

Krauze, Patryk; Kämpf, Horst; Horn, Fabian; Liu, Qi; Voropaev, Andrey; Wagner, Dirk; Alawi, Mashal

2017-01-01

The Cheb Basin (NW Bohemia, Czech Republic) is a shallow, neogene intracontinental basin. It is a non-volcanic region which features frequent earthquake swarms and large-scale diffuse degassing of mantle-derived CO2 at the surface that occurs in the form of CO2-rich mineral springs and wet and dry mofettes. So far, the influence of CO2 degassing onto the microbial communities has been studied for soil environments, but not for aquatic systems. We hypothesized, that deep-trenching CO2 conduits interconnect the subsurface with the surface. This admixture of deep thermal fluids should be reflected in geochemical parameters and in the microbial community compositions. In the present study four mineral water springs and two wet mofettes were investigated through an interdisciplinary survey. The waters were acidic and differed in terms of organic carbon and anion/cation concentrations. Element geochemical and isotope analyses of fluid components were used to verify the origin of the fluids. Prokaryotic communities were characterized through quantitative PCR and Illumina 16S rRNA gene sequencing. Putative chemolithotrophic, anaerobic and microaerophilic organisms connected to sulfur (e.g., Sulfuricurvum, Sulfurimonas) and iron (e.g., Gallionella, Sideroxydans) cycling shaped the core community. Additionally, CO2-influenced waters form an ecosystem containing many taxa that are usually found in marine or terrestrial subsurface ecosystems. Multivariate statistics highlighted the influence of environmental parameters such as pH, Fe2+ concentration and conductivity on species distribution. The hydrochemical and microbiological survey introduces a new perspective on mofettes. Our results support that mofettes are either analogs or rather windows into the deep biosphere and furthermore enable access to deeply buried paleo-sediments. PMID:29321765

Regional Big Injun (Price/Pocono) subsurface stratigraphy of West Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donaldson, A.C.; Zou, Xiangdong

1992-01-01

The lower Big Injun (Lower Mississippian) is the oil reservoir of the Granny Creek and Rock Creek fields and consists of multiple sandstones that were deposited in different fluvial-deltaic depositional environments. These multiple sandstones became amalgamated and now appear as a widespread blanket sandstone as a result of ancient cut and fill processes associated with river-channel sedimentation. The regional study of this Price Formation subsurface equivalent considers the continuity and thickness variations of the composite sandstones of the Big Injun mainly within western West Virginia. The major fluvial drainage system apparently flowed southward through Ohio (much of it later erodedmore » by the pre-Pottsville unconformity) during Big Injun time (and earlier) and part of the system was diverted into southwestern West Virginia as vertically stacked channel and river-mouth bar deposits (Rock Creek field). This ancient Ontario River system apparently drained a huge area including the northern craton as well as the orogenic belt. The emerging West Virginia Dome probably sourced the sediment transported by small rivers developing southwestward prograding deltas across Clay County (Granny Creek field). Sedimentation was affected by differential subsidence in the basin. Paleovalley fill was considered for areas with vertically stacked sandstones, but evidence for their origin is not convincing. Oil-reservoir sandstones are classified as dip-trending river channel (D1) and deltaic shoreline (D2) deposits.« less

An appraisal of subsurface geology and groundwater resources of Owerri and environs based on electrical resistivity survey and borehole data evaluation.

PubMed

Ibe, K M; Uzoukwu, S C

2001-09-01

The research was aimed at determining the depth to the water table, aquifer thickness and subsurface geology of the study area thus revealing its groundwater distribution as well as its potential as a substitute to the surface water resources. Vertical electrical soundings were carried out in the study area with maximum electrode spread. The Schlumberger electrode configuration technique was adopted. VES data were processed using Schlumberger analysis package. Lithologic logs of already existing boreholes in the study area were collected, evaluated and comparison were carried out. The results reveal alternating layers of sands, sandstones, gravel and clay. The lithologic logs revealed that the study area is underlain by coastal sands (Benin formation). The water table varies from 10-64 m and thickness of the aquifer ranges from 20-80 m. Results show that the study area is underlain by a thick extensive aquifer that has a transmissivity of 2.8 x 10(-2) m2 s(-1) to 3.3 x 10(-1) m2 s(-1) and storativity 1.44 x 10(-4) to 1.68 x 10(-3) m s(-1) values. The specific yield is about 0.31. The sandy component of the study area forms more than 90% of the sequence, therefore the permeability, the transmissivity and the storage coefficient are high with an excellent source of groundwater resources.

Sedimentary Catalysis of Radiolytic Hydrogen Production - A Global Perspective

NASA Astrophysics Data System (ADS)

Sauvage, J.; Spivack, A. J.; Smith, D. C.; Anderson, C. H.; Murray, R. W.; D'Hondt, S.

2016-12-01

Constraining rates of various energy- producing metabolic reactions is central to our understanding of subsurface microbial ecosystems. Radiolytic hydrogen (H2), produced by the radioactive splitting of water due to the natural decay of elements in the sediment, has been proposed to be a significant electron donor in sediment of oligothrophic oceanic regions. However accurate constraints of in situ production rates are required to test this hypothesis. We experimentally quantified radiolytic H2 yields (H2 produced per unit of absorbed energy in solution) due to γ radiation (Cs-137) and α radiation (Po-210) in marine sediment by exposing seawater slurries of sediment to radiation and measuring the production of H2. We selected 28 samples from different ocean basins and depositional environments aiming to capture the range of representative lithologies found across the global ocean. These experiments demonstrate that marine sediment greatly amplifies the production of radiolytic H2 production compared to pure water, with seawater-saturated abyssal clay exhibiting the highest yield. South Pacific Gyre [SPG], North Atlantic [NA] and North Pacific Gyre [NPG] abyssal clays amplify H2 production by factors of 13, 16 and 33, respectively. Calcareous ooze amplifies radiolytic H2 production by an average factor of 5. Despite continual production, dissolved H2 concentrations are generally below detection in oxic subseafloor sediment of the SPG, NPG and NA. This suggests that the aerobic H2 oxidation rate (Knallgas reaction) is essentially equal to its production rate in these environments. We assess the relative importance of buried organic matter and radiolytic H2 in terms of electron donor availability by comparing rates of radiolytic H2 production to rates of net O2 respiration (inferred to equal rates of organic oxidation). For NA, SPG and NPG abyssal clay older than a few million years, radiolytic H2 production rates are respectively factors of 20, 30 and 49 higher than rates of organic-fueled respiration rates. Extrapolating these results, we infer that radiolytic H2 is likely to be the predominant electron donor for subseafloor sedimentary communities throughout 37% of the global ocean.

Sedimentology and Reservoir Characteristics of Early Cretaceous Fluvio-Deltaic and Lacustrine Deposits, Upper Abu Gabra Formation, Sufyan Sub-basin, Muglad Rift Basin, Sudan

NASA Astrophysics Data System (ADS)

Yassin, Mohamed; Abdullatif, Osman; Hariri, Mustafa

2017-04-01

Sufyan Sub-basin is an East-West trending Sub-basin located in the northwestern part of the Muglad Basin (Sudan), in the eastern extension of the West and Central Africa Rift System (WCARS). The Early Cretaceous Abu Gabra Formation considered as the main source rock in the Muglad Basin. In Sufyan Sub-basin the Early Cretaceous Upper Abu Gabra Formation is the main oil-producing reservoir. It is dominated by sandstone and shales deposited in fluvio-deltaic and lacustrine environment during the first rift cycle in the basin. Depositional and post-depositional processes highly influenced the reservoir quality and architecture. This study investigates different scales of reservoir heterogeneities from macro to micro scale. Subsurface facies analysis was analyzed based on the description of six conventional cores from two wells. Approaches include well log analysis, thin sections and scanning electron microscope (SEM) investigations, grain-size, and X-ray diffraction (XRD) analysis of the Abu Gabra sandstone. The cores and well logs analyses revealed six lithofacies representing fluvio-deltaic and lacustrine depositional environment. The sandstone is medium to coarse-grained, poorly to moderately sorted and sub-angular to subrounded, Sub-feldspathic arenite to quartz arenite. On macro-scale, reservoir quality varies within Abu Gabra reservoir where it shows progressive coarsening upward tendencies with different degrees of connectivity. The upper part of the reservoir showed well connected and amalgamated sandstone bodies, the middle to lower parts, however, have moderate to low sandstone bodies' connectivity and amalgamation. On micro-scale, sandstone reservoir quality is directly affected by textures and diagenesis.The XRD and SEM analyses show that kaolinite and chlorite clay are the common clay minerals in the studied samples. Clay matrix and quartz overgrowth have significantly reduced the reservoir porosity and permeability, while the dissolution of feldspars during the diagenetic process increase it. The estimated porosity in Abu Gabra Formation ranges from 10 to 21% with an average of 15%; while permeability varies from 200 to 400 md. The results of this study might contribute to better understanding of reservoir heterogeneities and help in reservoir quality prediction, therefore enhancing the hydrocarbon productivity.

Adapt or Die on the Highway To Hell: Metagenomic Insights into Altered Genomes of Firmicutes from the Deep Biosphere

NASA Astrophysics Data System (ADS)

Briggs, B. R.; Colwell, F. S.

2014-12-01

The ability of a microbe to persist in low-nutrient environments requires adaptive mechanisms to survive. These microorganisms must reduce metabolic energy and increase catabolic efficiency. For example, Escherichia coli surviving in low-nutrient extended stationary phase have mutations that confer a growth advantage in stationary phase (GASP) phenotype, thus allowing for persistence for years in low-nutrient environments. Based on the fact that subseafloor environments are characterized by energy flux decrease with time of burial we hypothesize that cells from older (deeper) sediment layers will have more altered genomes compared to sequenced surface relatives and that these differences reflect adaptations to a low-energy flux environment. To test this hypothesis, sediment samples were collected from the Andaman Sea from the depths of 21, 40 and 554 meters below seafloor, with the ages of 0.34, 0.66, and 8.76 million years, respectively. A single operational taxonomic unit within Firmicutes, based on full-length 16S rDNA, dominated these low diversity samples. This unique feature allowed for metagenomic sequencing using the Illumina HiSeq to identify nucleotide variations (NV) between the subsurface Firmicutes and the closest sequenced representative, Bacillus subtilis BEST7613. NVs were present at all depths in genes that code for proteins used in energy-dependent proteolysis, cell division, sporulation, and (similar to the GASP mutants) biosynthetic pathways for amino acids, nucleotides, and fatty acids. Conserved genes such as 16S rDNA did not contain NVs. More NVs were found in genes from deeper depths. These NV may be beneficial or harmful allowing them to survive for millions of years in the deep biosphere or may be latent deleterious gene alterations that are masked by the minimal-growth status of these deep microbes. Either way these results show that microbes present in the deep biosphere experience environmental forcing that alters the genome.

Evaluation of the healing activity of therapeutic clay in rat skin wounds.

PubMed

Dário, Giordana Maciel; da Silva, Geovana Gomes; Gonçalves, Davi Ludvig; Silveira, Paulo; Junior, Adilson Teixeira; Angioletto, Elidio; Bernardin, Adriano Michael

2014-10-01

The use of clays for therapeutic practice is widespread in almost all regions of the world. In this study the physicochemical and microbiological healing characteristics of a clay from Ocara, Brazil, popularly used for therapeutic uses, were analyzed. The presence of Ca, Mg, Al, Fe, and Si was observed, which initially indicated that the clay had potential for therapeutic use. The average particle size of the clay (26.3 μm) can induce the microcirculation of the skin and the XRD analysis shows that the clay is formed by kaolinite and illite, a swelling clay. During the microbiological evaluation there was the need to sterilize the clay for later incorporation into the pharmaceutical formula. The accelerated stability test at 50°C for 3 months has showed that the pharmaceutical formula remained stable with a shelf life of two years. After the stability test the wound-healing capacity of the formulation in rats was evaluated. It was observed that the treatment made with the formulation containing the Ocara clay showed the best results since the formula allowed greater formation of collagen fibers and consequent regeneration of the deep dermis after seven days of treatment and reepithelialization and continuous formation of granulation tissue at the 14th day. Copyright © 2014 Elsevier B.V. All rights reserved.

Isolation and Characterization of Electrochemically Active Subsurface Delftia and Azonexus Species

PubMed Central

Jangir, Yamini; French, Sarah; Momper, Lily M.; Moser, Duane P.; Amend, Jan P.; El-Naggar, Mohamed Y.

2016-01-01

Continental subsurface environments can present significant energetic challenges to the resident microorganisms. While these environments are geologically diverse, potentially allowing energy harvesting by microorganisms that catalyze redox reactions, many of the abundant electron donors and acceptors are insoluble and therefore not directly bioavailable. Extracellular electron transfer (EET) is a metabolic strategy that microorganisms can deploy to meet the challenges of interacting with redox-active surfaces. Though mechanistically characterized in a few metal-reducing bacteria, the role, extent, and diversity of EET in subsurface ecosystems remains unclear. Since this process can be mimicked on electrode surfaces, it opens the door to electrochemical techniques to enrich for and quantify the activities of environmental microorganisms in situ. Here, we report the electrochemical enrichment of microorganisms from a deep fractured-rock aquifer in Death Valley, CA, USA. In experiments performed in mesocosms containing a synthetic medium based on aquifer chemistry, four working electrodes (WEs) were poised at different redox potentials (272, 373, 472, 572 mV vs. SHE) to serve as electron acceptors, resulting in anodic currents coupled to the oxidation of acetate during enrichment. The anodes were dominated by Betaproteobacteria from the families Comamonadaceae and Rhodocyclaceae. A representative of each dominant family was subsequently isolated from electrode-associated biomass. The EET abilities of the isolated Delftia strain (designated WE1-13) and Azonexus strain (designated WE2-4) were confirmed in electrochemical reactors using WEs poised at 522 mV vs. SHE. The rise in anodic current upon inoculation was correlated with a modest increase in total protein content. Both genera have been previously observed in mixed communities of microbial fuel cell enrichments, but this is the first direct measurement of their electrochemical activity. While alternate metabolisms (e.g., nitrate reduction) by these organisms were previously known, our observations suggest that additional ‘hidden’ interactions with external electron acceptors are also possible. Electrochemical approaches are well positioned to dissect such extracellular interactions that may be prevalent in the subsurface. PMID:27242768

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples

PubMed Central

Lusher, Amy L.; Tirelli, Valentina; O’Connor, Ian; Officer, Rick

2015-01-01

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment. PMID:26446348

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples

NASA Astrophysics Data System (ADS)

Lusher, Amy L.; Tirelli, Valentina; O'Connor, Ian; Officer, Rick

2015-10-01

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment.

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples.

PubMed

Lusher, Amy L; Tirelli, Valentina; O'Connor, Ian; Officer, Rick

2015-10-08

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment.

Effects of the chemical environment on the spectroscopic properties of clays: Applications for Mars

NASA Technical Reports Server (NTRS)

Bishop, Janice L.; Pieters, Carle M.

1992-01-01

Laboratory studies of Mars soil analogs pose unique problems, since soils interact readily with their environment and exhibit variable characteristics depending on the environment. We have performed a series of experiments focusing on the spectral properties of clays and how they vary as a function of composition and environment, including examination of fundamental as well as overtone absorptions, that occur in the mid- and near-IR, respectively. Smectite clays have been selected in our laboratory experiments as a primary surface analog for Mars because of their compatibility with results of the Viking biology experiments, their stability under current martian conditions, and their compatibility with reflectance spectra of Mars. We prepared a number of monoionic montmorillonites in order to examine the influence of cations on the water molecules in the clay interlayer region. Moessbauer spectra of several montmorillonites with variable amounts of interlayer iron confirm the presence of ferrihydrite.

Prevalence of the Chloroflexi-Related SAR202 Bacterioplankton Cluster throughout the Mesopelagic Zone and Deep Ocean†

PubMed Central

Morris, R. M.; Rappé, M. S.; Urbach, E.; Connon, S. A.; Giovannoni, S. J.

2004-01-01

Since their initial discovery in samples from the north Atlantic Ocean, 16S rRNA genes related to the environmental gene clone cluster known as SAR202 have been recovered from pelagic freshwater, marine sediment, soil, and deep subsurface terrestrial environments. Together, these clones form a major, monophyletic subgroup of the phylum Chloroflexi. While members of this diverse group are consistently identified in the marine environment, there are currently no cultured representatives, and very little is known about their distribution or abundance in the world's oceans. In this study, published and newly identified SAR202-related 16S rRNA gene sequences were used to further resolve the phylogeny of this cluster and to design taxon-specific oligonucleotide probes for fluorescence in situ hybridization. Direct cell counts from the Bermuda Atlantic time series study site in the north Atlantic Ocean, the Hawaii ocean time series site in the central Pacific Ocean, and along the Newport hydroline in eastern Pacific coastal waters showed that SAR202 cluster cells were most abundant below the deep chlorophyll maximum and that they persisted to 3,600 m in the Atlantic Ocean and to 4,000 m in the Pacific Ocean, the deepest samples used in this study. On average, members of the SAR202 group accounted for 10.2% (±5.7%) of all DNA-containing bacterioplankton between 500 and 4,000 m. PMID:15128540

Lake Waiau and Púupōhaku - two unusual lakes on Maunakea volcano, Hawaii

NASA Astrophysics Data System (ADS)

Leopold, Matthias; Schorghofer, Norbert

2017-04-01

High mountain lakes are often a valuable buffer for water availability throughout the year. This is especially the case in alpine deserts like the high alpine areas of the Hawaiian Volcanoes above 3000 m altitude, since the porous and coarse cinder material and basalt boulders do not favor water storage. Púupōhaku ( 4,000m asl), a cinder cone near the summit of Maunakea volcano, Hawaii, has a sporadic pond of water and also nearby Lake Waiau is perched within a cinder cone known as Púuwaiau ( 3600 m asl) which makes it the highest lake on the Hawaiian Islands. With only 210 mm annual precipitation mostly caused by single storm events, and a potential evaporation of up to 5mm/d, permanent water sources are extremely rare in this environment. Several hypotheses were discussed as a possible cause for perching the water in this environment such as an impermeable permafrost base, a massive block of lava or clay layers. We applied geomorphic mappings and electric resistivity tomography to portray the shallow subsurface in the vicinity of the two water bodies. We also used current and unpublished older temperature loggings to evaluate the thermal regime around the lakes. Based on our results, specific electric resistivity values are too low and ground temperatures are too high to be interpreted either as ice rich permafrost or basaltic massive rock. Much more, fine grained material such as ash and its clay-rich weathering products likely cause the perched water table at both study sites. At Lake Waiau we discovered a layer of high electric conductivity that may constitute a significant water reservoir outside of the lake and further be responsible for perching the water towards the lake. Understanding the nature of the two permanent water bodies will help to manage the sensitive alpine environment which includes several endemic species.

Identification of subsurface layer with Wenner-Schlumberger arrays configuration geoelectrical method

NASA Astrophysics Data System (ADS)

Jamaluddin; Prasetyawati Umar, Emi

2018-02-01

One of measurement methods to investigate the condition of the subsurface is by using geoelectric method. This research uses wenner-Schlumberger arrays configuration geoelectrical method which is mapping resistivity that is commonly known as profiling (2D) in order to identify the lateral and vertical anomaly of material resistivity. 2D resistivity cross section is obtained from the result of data- processing on software Res2Dinv. The data were obtained along 70 m using Wenner-Schlumberger configuration with 5 m spaced electrode. The approximated value of resistivity obtained from the data processing ranged from 1000-1548 Ωm and with the iteration error 87.9%. Based on the geological map of Ujung Pandang sheet, the location of the research is an alluvium and coastal precipitation area with grain in forms of gravel, sand, clay, mud, and coral limestone. Thus, by observing and analyzing the variety of the resistivity cross-section from the inversion data, there are areas (a) showing resistivity values ranged from 0.1-0.2 Ωm which is estimated to be salt water intrusion based on the resistivity table of Earth materials, and region (b) which is a mixture of sand and clay material with the range of resistivity values between 1-1000 μm.

Molecular dynamics simulations of uranyl adsorption and structure on the basal surface of muscovite

DOE PAGES

Teich-McGoldrick, Stephanie L.; Greathouse, Jeffery A.; Cygan, Randall T.

2014-02-05

Anthropogenic activities have led to an increased concentration of uranium on the Earth’s surface and potentially in the subsurface with the development of nuclear waste repositories. Uranium is soluble in groundwater, and its mobility is strongly affected by the presence of clay minerals in soils and in subsurface sediments. We use molecular dynamics simulations to probe the adsorption of aqueous uranyl (UO 2 2+) ions onto the basal surface of muscovite, a suitable proxy for typically ultrafine-grained clay phases. Model systems include the competitive adsorption between potassium counterions and aqueous ions (0.1 M and 1.0 M UO 2Cl 2 ,more » 0.1 M NaCl). We find that for systems with potassium and uranyl ions present, potassium ions dominate the adsorption phenomenon. Potassium ions adsorb entirely as inner-sphere complexes associated with the ditrigonal cavity of the basal surface. Uranyl ions adsorb in two configurations when it is the only ion species present, and in a single configuration in the presence of potassium. Finally, the majority of adsorbed uranyl ions are tilted less than 45° relative to the muscovite surface, and are associated with the Si 4Al 2 rings near aluminum substitution sites.« less

Geomorphology of the Alluvial Sediments and Bedrock in an Intermontane Basin: Application of Variogram Modeling to Electrical Resistivity Soundings

NASA Astrophysics Data System (ADS)

Khan, Adnan Ahmad; Farid, Asam; Akhter, Gulraiz; Munir, Khyzer; Small, James; Ahmad, Zulfiqar

2016-05-01

The study describes a methodology used to integrate legacy resistivity data with limited geological data in order to build three-dimensional models of the near subsurface. Variogram analysis and inversion techniques more typically found in the petroleum industry are applied to a set of 1D resistivity data taken from electrical surveys conducted in the 1980s. Through careful integration with limited geological data collected from boreholes and outcrops, the resultant model can be visualized in three dimensions to depict alluvium layers as lithological and structural units within the bedrock. By tuning the variogram parameters to account for directionality, it is possible to visualize the individual lithofacies and geomorphological features in the subsurface. In this study, an electrical resistivity data set collected as part of a groundwater study in an area of the Peshawar basin in Pakistan has been re-examined. Additional lithological logs from boreholes throughout the area have been combined with local outcrop information to calibrate the data. Tectonic activity during the Himalayan orogeny has caused uplift in the area and generated significant faulting in the bedrock resulting in the formation of depressions which are identified by low resistivity values representing clays. Paleo-streams have reworked these clays which have been eroded and replaced by gravel-sand facies along paleo-channels. It is concluded that the sediments have been deposited as prograding fan-shaped bodies and lacustrine deposits with interlayered gravel-sand and clay-silt facies. The Naranji area aquifer system has thus been formed as a result of local tectonic activity with fluvial erosion and deposition and is characterized by coarse sediments with high electrical resistivities.

Mössbauer investigations to characterize Fe lattice sites in sheet silicates and Peru Basin deep-sea sediments

NASA Astrophysics Data System (ADS)

Lougear, André; König, Iris; Trautwein, Alfred X.; Suess, Erwin

A procedure to classify different Fe lattice sites, i.e., OH-group geometries, in the clay mineral content of deep-sea sediments was developed using Mössbauer spectroscopy at low temperature (77 K). This speciation is of interest with regard to the redox behavior, reactivity and color of marine sediments, since substantial iron redox transitions (associated with sediment color change) have been documented for the structural sheet silicate iron. Lattice site classification was achieved for the Fe(II) fraction, all of which is structural clay Fe(II) in the sediments under investigation. Whereas the major part of the Fe(III) is structural clay iron as well, there is a small Fe(III) fraction in oxide minerals. Therefore, further elaboration of the procedure would be required to also achieve lattice site classification for the Fe(III) fraction. Analysis of the Mössbauer spectra is based on computer fits, the input parameters of which were derived from a separate study of Fe(II)-rich pure chlorites. The procedure of classification is qualified to investigate, e.g., in laboratory experiments, the site-specific reaction rates and the effects on sediment color of iron redox transitions in the sheet silicate content of sediments. The new skills were successfully applied in environmental impact studies on the mining of polymetallic nodules from the Peru Basin deep-sea floor.

Continental Shelf Sediments of Sarawak, Malaysian Borneo

PubMed Central

Masron, Tarmiji; Rumpet, Richard; Musel, Jamil

2017-01-01

Sediment distributions in deep sea influence the benthic community structure and thus play an important role in shaping the marine ecosystem. Several studies on sediment characteristics had been conducted in South China Sea (SCS), but only limited to coastal areas of regions within SCS territories. Therefore, this study was carried out to analyze the benthic sediment profile in an area beyond 12 nautical miles off the coast of Sarawak, southern SCS. Sediment samples were collected from 31 stations, comprising three depth ranges: (I) 20–50 m, (II) 50–100 m, and (III) 100–200 m. The total organic matter (TOM) contents were determined and subjected to dry and wet sieving methods for particle size analysis. TOM contents in the deep area (>50 m) were significantly higher (p = 0.05) and positively correlated (r = 0.73) with silt-clay fraction. About 55% and 82% of stations in strata II and III, respectively, were dominated by silt-clay fractions (<63 μm mean diameter), coherent with TOM data. In addition, sediments in the deep area (>50 m) tend to be poorly sorted, very fine skewed, and platykurtic. Unlike data obtained 20 years ago which reported high content of silt-clay (58%), this study recorded a lower content (35%); therefore, changes in sediment load had been observed in southern SCS. PMID:29075660

Application of Spectral Gamma Ray for Lithofacies and Paleo-environmental Interpretation: A Case Study from the Late Ordovician Glaciogenic Deposits, Saudi Arabia

NASA Astrophysics Data System (ADS)

Alqubalee, Abdullah; Abdullatif, Osman; Babalola, Lamidi

2017-04-01

This study is an integral part of multidisciplinary research being carried out on the Late Ordovician Sarah Formation in the Rub' Al-Khali Basin, Saudi Arabia. Sarah Formation proved to be important target for tight gas reservoir in Saudi Arabia. This study integrates lithofacies characteristics and spectral Gamma Ray of core samples so as to identify and differentiate among different depositional environments. Thorium (Th, ppm) and potassium (K, %) are acquired with approximately a reading point per inch using high-resolution Spectral Core Gamma. The cores description and analysis from six exploratory wells revealed four depositional environments ranging from the glaciofluvial, glaciolacustrine delta, subglacial to the nearshore environments. Based on lithofacies and geochemical analysis of the core samples, four groups of lithofacies including sandstone (G1), claystone and/or argillaceous sandstone (G2), calcareous and/or evaporitic sandstone (G3), and diamictites (G4) were recognized in each well. The bivariate plots of Th and K were used to delineate the minerals contents in each core and environment. The results showed that the G1 facies of the nearshore and glaciofluvial environments are characterized by similar distribution patterns of these elements exhibiting lower clay minerals variations than that in the other groups of lithofacies. These patterns consist of two mineral groups, the first one includes illite and montmorillonite clay minerals while the second one includes mica, glauconite, and feldspar. By contrast, G1 and G2 lithofacies of the glaciolacustrine delta environment are characterized by a range of clay minerals. However, G3 of this environment exhibits similar pattern of the nearshore and the glaciofluvial environments This is because the grains of G3 are cemented by anhydrite rather than by clays. Based on the lithological characteristic, matrix-supported and clast-supported diamictites were identified in the subglacial environment. The differences between these two lithofacies were clearly detected using Th/K plot. Both diamictites are characterized by a range of minerals including illite, mixed layer clays, glauconite, and feldspar. The matrix-supported diamictites contain higher proportions of these minerals. This study indicates that the relationship between Th and K can be used to predict the types of lithofacies and clay contents in different glaciogenic depositional environments. In addition, it can be used to predict the relative amounts of the clay minerals in each lithofacies. In turn, identifying the types and the amounts of clay minerals in lithofacies facilitate the prediction of reservoir quality and eventually lead to enhancement of their development and productivity.

Exploring the hydraulic fracturing parameter space: a novel high-pressure, high-throughput reactor system for investigating subsurface chemical transformations.

PubMed

Sumner, Andrew J; Plata, Desiree L

2018-02-21

Hydraulic fracturing coupled with horizontal drilling (HDHF) involves the deep-well injection of a fracturing fluid composed of diverse and numerous chemical additives designed to facilitate the release and collection of natural gas from shale plays. Analyses of flowback wastewaters have revealed organic contamination from both geogenic and anthropogenic sources. The additional detections of undisclosed halogenated chemicals suggest unintended in situ transformation of reactive additives, but the formation pathways for these are unclear in subsurface brines. To develop an efficient experimental framework for investigating the complex shale-well parameter space, we have reviewed and synthesized geospatial well data detailing temperature, pressure, pH, and halide ion values as well as industrial chemical disclosure and concentration data. Our findings showed subsurface conditions can reach pressures up to 4500 psi (310 bars) and temperatures up to 95 °C, while at least 588 unique chemicals have been disclosed by industry, including reactive oxidants and acids. Given the extreme conditions necessary to simulate the subsurface, we briefly highlighted existing geochemical reactor systems rated to the necessary pressures and temperatures, identifying throughput as a key limitation. In response, we designed and developed a custom reactor system capable of achieving 5000 psi (345 bars) and 90 °C at low cost with 15 individual reactors that are readily turned over. To demonstrate the system's throughput, we simultaneously tested 12 disclosed HDHF chemicals against a radical initiator compound in simulated subsurface conditions, ruling out a dozen potential transformation pathways in a single experiment. This review outlines the dynamic and diverse parameter range experienced by HDHF chemical additives and provides an optimized framework and novel reactor system for the methodical study of subsurface transformation pathways. Ultimately, enabling such studies will provide urgently needed clarity for water treatment downstream or releases to the environment.

Assessment of brine migration risks along vertical pathways due to CO2 injection

NASA Astrophysics Data System (ADS)

Kissinger, Alexander; Class, Holger

2015-04-01

Global climate change, shortage of resources and the growing usage of renewable energy sources has lead to a growing demand for the utilization of subsurface systems. Among these competing uses are Carbon Capture and Storage (CCS), geothermal energy, nuclear waste disposal, 'renewable' methane or hydrogen storage as well as the ongoing production of fossil resources like oil, gas and coal. Additionally, these technologies may also create conflicts with essential public interests such as water supply. For example, the injection of CO2 into the subsurface causes an increase in pressure reaching far beyond the actual radius of influence of the CO2 plume, potentially leading to large amounts of displaced salt water. In this work we focus on the large scale impacts of CO2 storage on brine migration but the methodology and the obtained results may also apply to other fields like waste water disposal, where large amounts of fluid are injected into the subsurface. In contrast to modeling on the reservoir scale the spatial scale required for this work is much larger in both vertical and lateral direction, as the regional hydrogeology has to be considered. Structures such as fault zones, hydrogeological windows in the Rupelian clay or salt domes are considered as potential pathways for displaced fluids into shallow systems and their influence has to be taken into account. We put the focus of our investigations on the latter type of scenario, since there is still a poor understanding of the role that salt diapirs would play in CO2 storage projects. As there is hardly any field data available on this scale, we compare different levels of model complexity in order to identify the relevant processes for brine displacement and simplify the modeling process wherever possible, for example brine injection vs. CO2 injection, simplified geometries vs. the complex formation geometry and the role of salt induced density differences on flow. Further we investigate the impact of the displaced brine due to CO2 injection and compare it to the natural fluid exchange between shallow and deep aquifers in order to asses possible damage.

Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments

USGS Publications Warehouse

Lovley, D.R.; Goodwin, S.

1988-01-01

Factors controlling the concentration of dissolved hydrogen gas in anaerobic sedimentary environments were investigated. Results, presented here or previously, demonstrated that, in sediments, only microorganisms catalyze the oxidation of H2 coupled to the reduction of nitrate, Mn(IV), Fe(III), sulfate, or carbon dioxide. Theoretical considerations suggested that, at steady-state conditions, H2 concentrations are primarily dependent upon the physiological characteristics of the microorganism(s) consuming the H2 and that organisms catalyzing H2 oxidation, with the reduction of a more electrochemically positive electron acceptor, can maintain lower H2 concentrations than organisms using electron acceptors which yield less energy from H2 oxidation. The H2 concentrations associated with the specified predominant terminal electron-accepting reactions in bottom sediments of a variety of surface water environments were: methanogenesis, 7-10 nM; sulfate reduction, 1-1.5 nM; Fe(III) reduction, 0.2 nM; Mn(IV) or nitrate reduction, less than 0.05 nM. Sediments with the same terminal electron acceptor for organic matter oxidation had comparable H2 concentrations, despite variations in the rate of organic matter decomposition, pH, and salinity. Thus, each terminal electron-accepting reaction had a unique range of steady-state H2 concentrations associated with it. Preliminary studies in a coastal plain aquifer indicated that H2 concentrations also vary in response to changes in the predominant terminal electron-accepting process in deep subsurface environments. These studies suggest that H2 measurements may aid in determining which terminal electron-accepting reactions are taking place in surface and subsurface sedimentary environments. ?? 1988.

The Global ASTER Geoscience and Mineralogical Maps

NASA Astrophysics Data System (ADS)

Abrams, M.

2017-12-01

In 2012, Australia's Commonwealth Scientific and Industrial Research Organization (CSIRO) released 17 Geoscience mineral maps for the continent of Australia We are producing the CSIRO Geoscience data products for the entire land surface of the Earth. These maps are created from Advanced Spacecraft Thermal Emission and Reflection Radiometer (ASTER) data, acquired between 2000 and 2008. ASTER, onboard the United States' Terra satellite, is part of NASA's Earth Observing System. This multispectral satellite system has 14 spectral bands spanning: the visible and near-infrared (VNIR) @ 15 m pixel resolution; shortwave-infrared (SWIR) @ 30 m pixel resolution; and thermal infrared (TIR) @ 90 m pixel resolution. In a polar-orbit, ASTER acquires a 60 km swath of data.The CSIRO maps are the first continental-scale mineral maps generated from an imaging satellite designed to measure clays, quartz and other minerals. Besides their obvious use in resource exploration, the data have applicability to climatological studies. Over Australia, these satellite mineral maps improved our understanding of weathering, erosional and depositional processes in the context of changing weather, climate and tectonics. The clay composition map showed how kaolinite has developed over tectonically stable continental crust in response to deep weathering. The same clay composition map, in combination with one sensitive to water content, enabled the discrimination of illite from montmorillonite clays that typically develop in large depositional environments over thin (sinking) continental crust. This product was also used to measure temporal gains/losses of surface clay caused by periodic wind erosion (dust) and rainfall inundation (flood) events. The two-year project is undertaken by JPL with collaboration from CSIRO. JPL has in-house the entire ASTER global archive of Level 1B image data—more than 1,500,000 scenes. This cloud-screened and vegetation-masked data set will be the basis for creation of the suite of global Geoscience products using all of ASTER's 14 VNIR-SWIR-TIR spectral bands resampled to 100 m pixel resolution. We plan a staged release of the geoscience products through NASA's LPDAAC.

Impact disruption and recovery of the deep subsurface biosphere

USGS Publications Warehouse

Cockell, Charles S.; Voytek, Mary A.; Gronstal, Aaron L.; Finster, Kai; Kirshtein, Julie D.; Howard, Kieren; Reitner, Joachim; Gohn, Gregory S.; Sanford, Ward E.; Horton, J. Wright; Kallmeyer, Jens; Kelly, Laura; Powars, David S.

2012-01-01

Although a large fraction of the world's biomass resides in the subsurface, there has been no study of the effects of catastrophic disturbance on the deep biosphere and the rate of its subsequent recovery. We carried out an investigation of the microbiology of a 1.76 km drill core obtained from the ~35 million-year-old Chesapeake Bay impact structure, USA, with robust contamination control. Microbial enumerations displayed a logarithmic downward decline, but the different gradient, when compared to previously studied sites, and the scatter of the data are consistent with a microbiota influenced by the geological disturbances caused by the impact. Microbial abundance is low in buried crater-fill, ocean-resurge, and avalanche deposits despite the presence of redox couples for growth. Coupled with the low hydraulic conductivity, the data suggest the microbial community has not yet recovered from the impact ~35 million years ago. Microbial enumerations, molecular analysis of microbial enrichment cultures, and geochemical analysis showed recolonization of a deep region of impact-fractured rock that was heated to above the upper temperature limit for life at the time of impact. These results show how, by fracturing subsurface rocks, impacts can extend the depth of the biosphere. This phenomenon would have provided deep refugia for life on the more heavily bombarded early Earth, and it shows that the deeply fractured regions of impact craters are promising targets to study the past and present habitability of Mars.

Impact disruption and recovery of the deep subsurface biosphere.

PubMed

Cockell, Charles S; Voytek, Mary A; Gronstal, Aaron L; Finster, Kai; Kirshtein, Julie D; Howard, Kieren; Reitner, Joachim; Gohn, Gregory S; Sanford, Ward E; Horton, J Wright; Kallmeyer, Jens; Kelly, Laura; Powars, David S

2012-03-01

Although a large fraction of the world's biomass resides in the subsurface, there has been no study of the effects of catastrophic disturbance on the deep biosphere and the rate of its subsequent recovery. We carried out an investigation of the microbiology of a 1.76 km drill core obtained from the ∼35 million-year-old Chesapeake Bay impact structure, USA, with robust contamination control. Microbial enumerations displayed a logarithmic downward decline, but the different gradient, when compared to previously studied sites, and the scatter of the data are consistent with a microbiota influenced by the geological disturbances caused by the impact. Microbial abundance is low in buried crater-fill, ocean-resurge, and avalanche deposits despite the presence of redox couples for growth. Coupled with the low hydraulic conductivity, the data suggest the microbial community has not yet recovered from the impact ∼35 million years ago. Microbial enumerations, molecular analysis of microbial enrichment cultures, and geochemical analysis showed recolonization of a deep region of impact-fractured rock that was heated to above the upper temperature limit for life at the time of impact. These results show how, by fracturing subsurface rocks, impacts can extend the depth of the biosphere. This phenomenon would have provided deep refugia for life on the more heavily bombarded early Earth, and it shows that the deeply fractured regions of impact craters are promising targets to study the past and present habitability of Mars.

Clay-mineral assemblages from some levels of K-118 drill core of Maha Sarakham evaporites, northeastern Thailand

NASA Astrophysics Data System (ADS)

Suwanich, Parkorn

Clay-mineral assemblages in Middle Clastic, Middle Salt, Lower Clastic, Potash Zone, and Lower Salt, totalling 13 samples from K-118 drill core, in the Maha Sarakham Formation, Khorat Basin, northeastern Thailand were studied. The clay-size particles were separated from the water-soluble salt by water leaching. Then the samples were leached again in the EDTA solution and separated into clay-size particles by using the timing sedimentation. The EDTA-clay residues were divided and analyzed by using the XRD and XRF method. The XRD peaks show that the major-clay minerals are chlorite, illite, and mixed-layer corrensite including traces of rectorite? and paragonite? The other clay-size particles are quartz and potassium feldspar. The XRF results indicate Mg-rich values and moderate MgAl atom ratio values in those clay minerals. The variable Fe, Na, and K contents in the clay-mineral assemblages can explain the environment of deposition compared to the positions of the samples from the core. Hypothetically, mineralogy and the chemistry of the residual assemblages strongly indicate that severe alteration and Mg-enrichment of normal clay detritus occurred in the evaporite environment through brine-sediment interaction. The various Mg-enrichment varies along the various members reflecting whether sedimentation is near or far from the hypersaline brine.

Cone penetration tests and soil borings at the Mason Road site in Green Valley, Solano County, California

USGS Publications Warehouse

Bennett, Michael J.; Noce, Thomas E.; Lienkaemper, James J.

2011-01-01

In support of a study to investigate the history of the Green Valley Fault, 13 cone penetration test soundings and 3 auger borings were made at the Mason Road site in Green Valley, Solano County, California. Three borings were made at or near two of the cone penetration test soundings. The soils are mostly clayey with a few sandy layers or lenses. Fine-grained soils range from low plasticity sandy lean clay to very plastic fat clay. Lack of stratigraphic correlation in the subsurface prevented us from determining whether any channels had been offset at this site. Because the soils are generally very clayey and few sand layers or lenses are loose, the liquefaction potential at the site is very low.

Transient Electromagnetic Study of the Geologic Framework, Upper San Pedro Basin, Mexico

NASA Astrophysics Data System (ADS)

Bultman, M. W.; Gray, F.; Flemming, J. B.; Callegary, J.; Kleinkopf, M. D.

2006-12-01

The San Pedro River flows north from near Cananea, Mexico into the U.S. and ends at its confluence with the Gila River in Arizona. The river supports a riparian habitat that is important for its biological diversity and is the most significant flyway for migrating birds in southwest North America. Nearby communities in Arizona and Mexico are pumping groundwater from basin fill in the San Pedro valley and there is much concern about the effects of this pumping on the baseflow of the San Pedro River. Local, State, and National agencies have been studying this issue from a wide variety of perspectives. To help address the problem, the U.S. Geological Survey has undertaken an integrative research effort utilizing geologic mapping, multiple geophysical techniques, and multi-spectral imaging to better understand the geology, geometry, structure and basin fill sediments in the San Pedro basin in Mexico. An existing aeromagnetic survey coupled with a natural source audio frequency magnetotelluric study indicates that the basin is less than 1km deep in most places and contains at least two sub-basins. These sub-basins are separated by a subsurface bedrock high that is well below the present water table. Also, several vertical electrical soundings, acquired by Grupo Mexico in the region, indicate that the central portion of the basin may contain several, potentially thick, sequences of clay. The transient electromagnetic (TEM) survey was designed to provide more information on the nature of the basin fill sediments and to provide a better estimate of the depth of the bedrock structural high. The TEM data was acquired with a Zonge ZeroTEM instrument at 104 locations with 150m per side square loops using approximately 3.6 amps of current at a base frequency of 16 Hz. The locations of the TEM stations, generally spaced 0.5km apart, were designed to obtain a conductivity-depth profile along approximately 30km of the San Pedro River in Mexico and at three locations perpendicular to the river. At each station location one reading was taken in the center of the loop and two were taken outside the loop at a distance of 150m from the loop center. The data was inverted for subsurface resistivity layers using EMIGMA software with most inversions being constrained to depths of 500m or less. The outside readings are used to give an indication if there are three-dimensional geologic effects present that may influence the one-dimensional inversion routine. The results indicate that the central portion of the basin along the path of the San Pedro River contains two to three clay sequences that are over 100m thick in some locations. The clay sequences diminish in the basin margins to the east and west of the river. The bedrock structural high between the two sub-basins is not shallower than about 250m and likely does not significantly influence groundwater flow. The location and thickness of the clay sediments appear to be the important factor in the basin groundwater hydrology in the upper 300m of the basin fill. The TEM data also indicates that the basin bedrock geometry may be much more complicated than two simple sub-basins separated by a bedrock high.

Workshop Report on Deep Mars: Accessing the Subsurface of Mars on Near Term Missions

NASA Technical Reports Server (NTRS)

Langhoff, Stephanie R. (Editor)

2008-01-01

The workshop encompassed three major themes. The first theme was the scientific objectives of drilling, which center on the search for clues to the existence of past life and to the geological and climate history of Mars. Key questions are where and how deep to drill? Planetary protection issues were stressed as an important consideration in the design of any drilling mission. Secondly, architectures for drilling missions were discussed, including an overview of most of the current drills in operation that would be applicable to drilling on Mars. Considerable emphasis was placed on remote operation and drilling automation technologies. Finally, alternatives to conventional drilling were discussed. These included underground moles, penetrometers, horizontal drilling, impactors, and access to the subsurface from subsurface cavities. Considerable discussion centered on the possible Mars drilling missions that could be performed in both the near and longer term. The workshop participants concluded that useful science could be obtained today using low-cost impactors, with or without a sheperding spacecraft.

Use of borehole geophysical logs for improved site characterization at Naval Weapons Industrial Reserve Plant, Dallas, Texas

USGS Publications Warehouse

Anaya, Roberto; Braun, Christopher L.; Kuniansky, Eve L.

2000-01-01

A shallow alluvial aquifer at the Naval Weapons Industrial Reserve Plant near Dallas, Texas, has been contaminated by organic solvents used in the fabrication and assembly of aircraft and aircraft parts. Natural gamma-ray and electromagnetic-induction log data collected during 1997 from 162 wells were integrated with existing lithologic and cone-penetrometer test log data to improve characterization of the subsurface alluvium at the site. The alluvium, consisting of mostly fine-grained, low-permeability sediments, was classified into low, intermediate, and high clay-content sediments on the basis of the gamma-ray logs. Low clay-content sediments were interpreted as being relatively permeable, whereas high clay-content sediments were interpreted as being relatively impermeable. Gamma-ray logs, cone-penetrometer test logs, and electromagnetic-induction logs were used to develop a series of intersecting sections to delineate the spatial distribution of low, intermediate, and high clay-content sediments and to delineate zones of potentially contaminated sediments. The sections indicate three major sedimentary units in the shallow alluvial aquifer at NWIRP. The lower unit consists of relatively permeable, low clay-content sediments and is absent over the southeastern and northwestern part of the site. Permeable zones in the complex, discontinuous middle unit are present mostly in the western part of the site. In the eastern and southeastern part of the site, the upper unit has been eroded away and replaced by fill material. Zones of potentially contaminated sediments are generally within the uppermost clay layer or fill material. In addition, the zones tend to be local occurrences.

Transient electromagnetic soundings in the San Luis Valley, Colorado, near the Great Sand Dunes National Park and Preserve and the Alamosa National Wildlife Refuge (field seasons 2007, 2009, and 2011)

USGS Publications Warehouse

Fitterman, David V.

2017-06-13

Transient electromagnetic (TEM) soundings were made in the San Luis Valley, Colorado, to map the location of a blue clay unit as well as to investigate the presence of suspected faults. A total of 147 soundings were made near and in Great Sand Dunes National Park and Preserve, and an additional 6 soundings were made near Hansen Bluff on the eastern edge of the Alamosa National Wildlife Refuge. The blue clay is a significant hydrologic feature in the area that separates an unconfined surface aquifer from a deeper confined aquifer. Knowledge of its location is important to regional hydrological models. Previous analysis of well logs has shown that the blue clay has a resistivity of 10 ohm-meters or less, which is in contrast to the higher resistivity of sand, gravel, and other clay units found in the area, making it a very good target for TEM soundings. The top of the blue clay was found to have considerable relief, suggesting the possibility of deformation of the clay during or after deposition. Because of rift activity, deformation is to be expected. Of the TEM profiles made across faults identified by aeromagnetic data, some showed resistivity variations and (or) subsurface elevation relief of resistivity units, suggestive of faulting. Such patterns were not associated with all suspected faults. The Hansen Bluff profile showed variations in resistivity and depth to conductor that coincide with a scarp between the highlands to the east and the floodplain of the Rio Grande to the west.

Structural control on the deep hydrogeological and geothermal aquifers related to the fractured Campanian-Miocene reservoirs of north-eastern Tunisia foreland constrained by subsurface data

NASA Astrophysics Data System (ADS)

Khomsi, Sami; Echihi, Oussema; Slimani, Naji

2012-03-01

A set of different data including high resolution seismic sections, petroleum wire-logging well data, borehole piezometry, structural cross-sections and outcrop analysis allowed us to characterise the tectonic framework, and its relationships with the deep aquifers seated in Cretaceous-Miocene deep reservoirs. The structural framework, based on major structures, controls the occurrence of deep aquifers and sub-basin aquifer distributions. Five structural domains can be defined, having different morphostructural characteristics. The northernmost domain lying on the north-south axis and Zaghouan thrust system is a domain of recharge by underflow of the different subsurface reservoirs and aquifers from outcrops of highly fractured reservoirs. On the other hand, the morphostructural configuration controls the piezometry of underground flows in the Plio-Quaternary unconfined aquifer. In the subsurface the Late Cretaceous-Miocene reservoirs are widespread with high thicknesses in many places and high porosities and connectivities especially along major fault corridors and on the crestal parts of major anticlines. Among all reservoirs, the Oligo-Miocene, detritic series are widespread and present high cumulative thicknesses. Subsurface and fieldwork outline the occurrence of 10 fractured sandy reservoirs for these series with packages having high hydrodynamic and petrophysical characteristics. These series show low salinities (maximum 5 g/l) in the northern part of the study area and will constitute an important source of drinkable water for the next generations. A regional structural cross-section is presented, compiled from all the different data sets, allowing us to define the major characteristics of the hydrogeological-hydrogeothermal sub-basins. Eight hydrogeological provinces are defined from north-west to south-east. A major thermal anomaly is clearly identified in the south-eastern part of the study area in Sfax-Sidi Il Itayem. This anomaly is possibly related to major faults pertaining to the Sirt basin and controlled by a deep thermal anomaly. Many exploration targets are identified especially along the Cherichira-Kondar thrust where the Oligocene subcropping reservoirs are well developed. They are highly fractured and show good hydrodynamic characteristics.

INTERACTIONS BETWEEN ORGANIC COMPOUNDS AND CYCLODEXTRIN-CLAY SYSTEMS

EPA Science Inventory

Computational and experimental techniques are combined in order to better understand interactions involving organic compounds and cyclodextrin (CD)-clay systems. CD-clay systems may have great potential in the containment of organic contaminants in the environment. This study w...

Hidden Markov models reveal complexity in the diving behaviour of short-finned pilot whales

PubMed Central

Quick, Nicola J.; Isojunno, Saana; Sadykova, Dina; Bowers, Matthew; Nowacek, Douglas P.; Read, Andrew J.

2017-01-01

Diving behaviour of short-finned pilot whales is often described by two states; deep foraging and shallow, non-foraging dives. However, this simple classification system ignores much of the variation that occurs during subsurface periods. We used multi-state hidden Markov models (HMM) to characterize states of diving behaviour and the transitions between states in short-finned pilot whales. We used three parameters (number of buzzes, maximum dive depth and duration) measured in 259 dives by digital acoustic recording tags (DTAGs) deployed on 20 individual whales off Cape Hatteras, North Carolina, USA. The HMM identified a four-state model as the best descriptor of diving behaviour. The state-dependent distributions for the diving parameters showed variation between states, indicative of different diving behaviours. Transition probabilities were considerably higher for state persistence than state switching, indicating that dive types occurred in bouts. Our results indicate that subsurface behaviour in short-finned pilot whales is more complex than a simple dichotomy of deep and shallow diving states, and labelling all subsurface behaviour as deep dives or shallow dives discounts a significant amount of important variation. We discuss potential drivers of these patterns, including variation in foraging success, prey availability and selection, bathymetry, physiological constraints and socially mediated behaviour. PMID:28361954

Development of anomaly detection models for deep subsurface monitoring

NASA Astrophysics Data System (ADS)

Sun, A. Y.

2017-12-01

Deep subsurface repositories are used for waste disposal and carbon sequestration. Monitoring deep subsurface repositories for potential anomalies is challenging, not only because the number of sensor networks and the quality of data are often limited, but also because of the lack of labeled data needed to train and validate machine learning (ML) algorithms. Although physical simulation models may be applied to predict anomalies (or the system's nominal state for that sake), the accuracy of such predictions may be limited by inherent conceptual and parameter uncertainties. The main objective of this study was to demonstrate the potential of data-driven models for leakage detection in carbon sequestration repositories. Monitoring data collected during an artificial CO2 release test at a carbon sequestration repository were used, which include both scalar time series (pressure) and vector time series (distributed temperature sensing). For each type of data, separate online anomaly detection algorithms were developed using the baseline experiment data (no leak) and then tested on the leak experiment data. Performance of a number of different online algorithms was compared. Results show the importance of including contextual information in the dataset to mitigate the impact of reservoir noise and reduce false positive rate. The developed algorithms were integrated into a generic Web-based platform for real-time anomaly detection.

Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents.

PubMed

Anderson, Rika E; Sogin, Mitchell L; Baross, John A

2015-01-01

Environmental gradients generate countless ecological niches in deep-sea hydrothermal vent systems, which foster diverse microbial communities. The majority of distinct microbial lineages in these communities occur in very low abundance. However, the ecological role and distribution of rare and abundant lineages, particularly in deep, hot subsurface environments, remain unclear. Here, we use 16S rRNA tag sequencing to describe biogeographic patterning and microbial community structure of both rare and abundant archaea and bacteria in hydrothermal vent systems. We show that while rare archaeal lineages and almost all bacterial lineages displayed geographically restricted community structuring patterns, the abundant lineages of archaeal communities displayed a much more cosmopolitan distribution. Finally, analysis of one high-volume, high-temperature fluid sample representative of the deep hot biosphere described a unique microbial community that differed from microbial populations in diffuse flow fluid or sulfide samples, yet the rare thermophilic archaeal groups showed similarities to those that occur in sulfides. These results suggest that while most archaeal and bacterial lineages in vents are rare and display a highly regional distribution, a small percentage of lineages, particularly within the archaeal domain, are successful at widespread dispersal and colonization. © FEMS 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

An Efficient Method for Subsurface Treatments, Including Squeeze Treatments

DTIC Science & Technology

2000-03-03

microstructures suitable for use in the present invention. The most common of these is halloysite , an inorganic aluminosilicate belonging to the kaolinite group...of clay minerals. See generally, Bates et al., "Morphology and structure of endellite and halloysite ", American 20 Minerologists 35 463-85...1950), which remains the definitive paper on halloysite . The mineral has 10 10 15 SSSn^.a,. PATHNTAPPHCATION the chemical formula Al203-2Si02

Evidence for Seismogenic Hydrogen Gas, a Potential Microbial Energy Source on Earth and Mars.

PubMed

McMahon, Sean; Parnell, John; Blamey, Nigel J F

2016-09-01

The oxidation of molecular hydrogen (H2) is thought to be a major source of metabolic energy for life in the deep subsurface on Earth, and it could likewise support any extant biosphere on Mars, where stable habitable environments are probably limited to the subsurface. Faulting and fracturing may stimulate the supply of H2 from several sources. We report the H2 content of fluids present in terrestrial rocks formed by brittle fracturing on fault planes (pseudotachylites and cataclasites), along with protolith control samples. The fluids are dominated by water and include H2 at abundances sufficient to support hydrogenotrophic microorganisms, with strong H2 enrichments in the pseudotachylites compared to the controls. Weaker and less consistent H2 enrichments are observed in the cataclasites, which represent less intense seismic friction than the pseudotachylites. The enrichments agree quantitatively with previous experimental measurements of frictionally driven H2 formation during rock fracturing. We find that conservative estimates of current martian global seismicity predict episodic H2 generation by Marsquakes in quantities useful to hydrogenotrophs over a range of scales and recurrence times. On both Earth and Mars, secondary release of H2 may also accompany the breakdown of ancient fault rocks, which are particularly abundant in the pervasively fractured martian crust. This study strengthens the case for the astrobiological investigation of ancient martian fracture systems. Deep biosphere-Faults-Fault rocks-Seismic activity-Hydrogen-Mars. Astrobiology 16, 690-702.

Development of a Compact, Deep-Penetrating Heat Flow Instrument for Lunar Landers: In-Situ Thermal Conductivity System

NASA Technical Reports Server (NTRS)

Nagihara, S.; Zacny, K.; Hedlund, M.; Taylor, P. T.

2012-01-01

Geothermal heat flow is obtained as a product of the geothermal gradient and the thermal conductivity of the vertical soil/rock/regolith interval penetrated by the instrument. Heat flow measurements are a high priority for the geophysical network missions to the Moon recommended by the latest Decadal Survey and previously the International Lunar Network. One of the difficulties associated with lunar heat flow measurement on a robotic mission is that it requires excavation of a relatively deep (approx 3 m) hole in order to avoid the long-term temporal changes in lunar surface thermal environment affecting the subsurface temperature measurements. Such changes may be due to the 18.6-year-cylcle lunar precession, or may be initiated by presence of the lander itself. Therefore, a key science requirement for heat flow instruments for future lunar missions is to penetrate 3 m into the regolith and to measure both thermal gradient and thermal conductivity. Engineering requirements are that the instrument itself has minimal impact on the subsurface thermal regime and that it must be a low-mass and low-power system like any other science instrumentation on planetary landers. It would be very difficult to meet the engineering requirements, if the instrument utilizes a long (> 3 m) probe driven into the ground by a rotary or percussive drill. Here we report progress in our efforts to develop a new, compact lunar heat flow instrumentation that meets all of these science and engineering requirements.

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships

PubMed Central

Lau, Maggie C. Y.; Cameron, Connor; Magnabosco, Cara; Brown, C. Titus; Schilkey, Faye; Grim, Sharon; Hendrickson, Sarah; Pullin, Michael; Sherwood Lollar, Barbara; van Heerden, Esta; Kieft, Thomas L.; Onstott, Tullis C.

2014-01-01

Comparative studies on community phylogenetics and phylogeography of microorganisms living in extreme environments are rare. Terrestrial subsurface habitats are valuable for studying microbial biogeographical patterns due to their isolation and the restricted dispersal mechanisms. Since the taxonomic identity of a microorganism does not always correspond well with its functional role in a particular community, the use of taxonomic assignments or patterns may give limited inference on how microbial functions are affected by historical, geographical and environmental factors. With seven metagenomic libraries generated from fracture water samples collected from five South African mines, this study was carried out to (1) screen for ubiquitous functions or pathways of biogeochemical cycling of CH4, S, and N; (2) to characterize the biodiversity represented by the common functional genes; (3) to investigate the subsurface biogeography as revealed by this subset of genes; and (4) to explore the possibility of using metagenomic data for evolutionary study. The ubiquitous functional genes are NarV, NPD, PAPS reductase, NifH, NifD, NifK, NifE, and NifN genes. Although these eight common functional genes were taxonomically and phylogenetically diverse and distinct from each other, the dissimilarity between samples did not correlate strongly with geographical or environmental parameters or residence time of the water. Por genes homologous to those of Thermodesulfovibrio yellowstonii detected in all metagenomes were deep lineages of Nitrospirae, suggesting that subsurface habitats have preserved ancestral genetic signatures that inform the study of the origin and evolution of prokaryotes. PMID:25400621

Photosynthesis below the surface in a cryptic microbial mat

NASA Astrophysics Data System (ADS)

Rothschild, Lynn J.; Giver, Lorraine J.

2002-10-01

The discovery of subsurface communities has encouraged speculation that such communities might be present on planetary bodies exposed to harsh surface conditions, including the early Earth. While the astrobiology community has focused on the deep subsurface, near-subsurface environments are unique in that they provide some protection while allowing partial access to photosynthetically active radiation. Previously we identified near-surface microbial communities based on photosynthesis. Here we assess the productivity of such an ecosystem by measuring in situ carbon fixation rates in an intertidal marine beach through a diurnal cycle, and find them surprisingly productive. Gross fixation along a transect (99×1 m) perpendicular to the shore was highly variable and depended on factors such as moisture and mat type, with a mean of ~41 mg C fixed m[minus sign]2 day[minus sign]1. In contrast, an adjacent well-established cyanobacterial mat dominated by Lyngbya aestuarii was ~12 times as productive (~500 mg C fixed m[minus sign]2 day[minus sign]1). Measurements made of the Lyngbya mat at several times per year revealed a correlation between total hours of daylight and gross daily production. From these data, annual gross fixation was estimated for the Lyngbya mat and yielded a value of ~1.3×105 g m[minus sign]2 yr[minus sign]1. An analysis of pulse-chase data obtained in the study in conjunction with published literature on similar ecosystems suggests that subsurface interstitial mats may be an overlooked endogenous source of organic carbon, mostly in the form of excreted fixed carbon.

Putting the Deep Biosphere on the Map for Oceanography Courses: Gas Hydrates As a Case Study for the Deep Biosphere

NASA Astrophysics Data System (ADS)

Sikorski, J. J.; Briggs, B. R.

2014-12-01

The ocean is essential for life on our planet. It covers 71% of the Earth's surface, is the source of the water we drink, the air we breathe, and the food we eat. Yet, the exponential growth in human population is putting the ocean and thus life on our planet at risk. However, based on student evaluations from our introductory oceanography course it is clear that our students have deficiencies in ocean literacy that impact their ability to recognize that the ocean and humans are inextricably connected. Furthermore, life present in deep subsurface marine environments is also interconnected to the study of the ocean, yet the deep biosphere is not typically covered in undergraduate oceanography courses. In an effort to improve student ocean literacy we developed an instructional module on the deep biosphere focused on gas hydrate deposits. Specifically, our module utilizes Google Earth and cutting edge research about microbial life in the ocean to support three inquiry-based activities that each explore different facets of gas hydrates (i.e. environmental controls, biologic controls, and societal implications). The relevant nature of the proposed module also makes it possible for instructors of introductory geology courses to modify module components to discuss related topics, such as climate, energy, and geologic hazards. This work, which will be available online as a free download, is a solid contribution toward increasing the available teaching resources focused on the deep biosphere for geoscience educators.

Bi-Static Deep Electromagnetic Soundings for Martian Subsurface Characterization: Experimental Validation in the Egyptian Western Desert

NASA Astrophysics Data System (ADS)

Ciarletti, V.; Le Gall, A.; Berthelier, J. J.; Corbel, Ch.; Dolon, F.; Ney, R.; Reineix, A.; Guiffaud, Ch.; Clifford, S.; Heggy, E.

2007-03-01

A bi-static version of the HF GPR TAPIR developed for martian deep soundings has been operated in the Egyptian Western Desert. The study presented focuses on the retrieval of the direction of arrival of the observed echoes on both simulated and measured d

Hillslope Chromatography in Savannas

NASA Astrophysics Data System (ADS)

Hartshorn, A.; Khomo, L.; Chadwick, O.; Rogers, K.; Kurtz, A.; Heimsath, A.

2005-12-01

In semiarid ecosystems, vegetation patterns are controlled in part by soil water availability. Along hillslopes in Kruger National Park, South Africa, water availability is strongly dependent on soil texture and textural differences with depth, which are a function of landscape position (convergent or divergent crests, midslopes, and footslopes) and parent material. We are studying weathering and landscape development on the western side of the park, which is underlain by granitic gneisses. Hillslopes in the park are often described as catenas, where rainfall catalyzes chemical weathering and drives the downslope transport of clays and weathering products, forming a predictable sequence of soil types. Sandy crest soils grade to midslope soils where sandy surface horizons overlie clayey subsurface horizons; footslopes generally have higher volumetric clay contents. The boundary between the sandy and clayey soils is of ecological significance because this is the location where run-on from upslope landscape positions is diverted to the surface, initiating overland flow and reducing infiltration. In a geochemical sense these hillslopes can be thought of as chromatographic columns that accentuate differential solute mobility along the long (~1-2 km) potential flowpaths. We use the compound topographic index (a terrain attribute that indexes soil wetness by dividing the upslope contributing area by the slope) to predict the redistribution of clays across these semiarid hillslopes and hope to demonstrate that landscape positions occupying comparable plan and profile curvatures contain clay and organic carbon in proportion to contributing area. Thus far, we have derived contributing area values for 40 soil pits using LiDAR-based digital elevation models and then tested how well contributing area and other terrain attributes predicted clay and carbon content for 218 horizons at these 40 locations. Depth-weighted soil clay ranged from 3 to 25% and total soil carbon ranged from 0.1 to 2.1%. Our preliminary results suggest that greater contributing area only produces greater soil clay content up to a threshold clay content, after which clay illuviation and in situ clay production slows following the diversion of water to the surface.

Quantifying the clay content with borehole depth and impact on reservoir flow

NASA Astrophysics Data System (ADS)

Sarath Kumar, Aaraellu D.; Chattopadhyay, Pallavi B.

2017-04-01

This study focuses on the application of reservoir well log data and 3D transient numerical model for proper optimization of flow dynamics and hydrocarbon potential. Fluid flow through porous media depends on clay content that controls porosity, permeability and pore pressure. The pressure dependence of permeability is more pronounced in tight formations. Therefore, preliminary clay concentration analysis and geo-mechanical characterizations have been done by using wells logs. The assumption of a constant permeability for a reservoir is inappropriate and therefore the study deals with impact of permeability variation for pressure-sensitive formation. The study started with obtaining field data from available well logs. Then, the mathematical models are developed to understand the efficient extraction of oil in terms of reservoir architecture, porosity and permeability. The fluid flow simulations have been done using COMSOL Multiphysics Software by choosing time dependent subsurface flow module that is governed by Darcy's law. This study suggests that the reservoir should not be treated as a single homogeneous structure with unique porosity and permeability. The reservoir parameters change with varying clay content and it should be considered for effective planning and extraction of oil. There is an optimum drawdown for maximum production with varying permeability in a reservoir.

Coupling Effects of Heat and Moisture on the Saturation Processes of Buffer Material in a Deep Geological Repository

NASA Astrophysics Data System (ADS)

Huang, Wei-Hsing

2017-04-01

Clay barrier plays a major role for the isolation of radioactive wastes in a underground repository. This paper investigates the resaturation behavior of clay barrier, with emphasis on the coupling effects of heat and moisture of buffer material in the near-field of a repository during groundwater intrusion processes. A locally available clay named "Zhisin clay" and a standard bentotine material were adopted in the laboratory program. Water uptake tests were conducted on clay specimens compacted at various densities to simulate the intrusion of groundwater into the buffer material. Soil suction of clay specimens was measured by psychrometers embedded in clay specimens and by vapor equilibrium technique conducted at varying temperatures. Using the soil water characteristic curve, an integration scheme was introduced to estimate the hydraulic conductivity of unsaturated clay. The finite element program ABAQUS was then employed to carry out the numerical simulation of the saturation process in the near field of a repository. Results of the numerical simulation were validated using the degree of saturation profile obtained from the water uptake tests on Zhisin clay. The numerical scheme was then extended to establish a model simulating the resaturation process after the closure of a repository. It was found that, due to the variation in suction and thermal conductivity with temperature of clay barrier material, the calculated temperature field shows a reduction as a result of incorporating the hydro-properties in the calculations.

Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, T; Fredrickson, Jim K.; Balkwill, David L.

Several strains of Sphingomonas isolated from deep Atlantic coastal plain aquifers at the US Department of Energy Savannah River Site (SRS) near Aiken, SC were shown to degrade a variety of aromatic hydrocarbons in a liquid culture medium. Sphingomonas aromaticivorans strain B0695 was the most versatile of the five strains examined. This strain was able to degrade acenaphthene, anthracene, phenanthrene, 2,3-benzofluorene, 2-methyl naphthalene, 2,3-dimethylnaphthalene, and fluoranthene in the presence of 400 mg l(-1) Tween 80. Studies involving microcosms composed of aquifer sediments showed that S. aromaticivorans B0695 could degrade phenanthrene effectively in sterile sediment and could enhance the rate atmore » which this compound was degraded in nonsterile sediment. These findings indicate that it may be feasible to carry out (or, at least, to enhance) in situ bioremediation of phenanthrene-contaminated soils and subsurface environments with S. aromaticivorans B0695. In contrast, stra in B0695 was unable to degrade fluoranthene in microcosms containing aquifer sediments, even though it readily degraded this polynuclear aromatic hydrocarbon (PAH) in a defined liquid growth medium.« less

Formation of recent Pb-Ag-Au mineralization by potential sub-surface microbial activity

NASA Astrophysics Data System (ADS)

Tornos, Fernando; Velasco, Francisco; Menor-Salván, César; Delgado, Antonio; Slack, John F.; Escobar, Juan Manuel

2014-08-01

Las Cruces is a base-metal deposit in the Iberian Pyrite Belt, one of the world’s best-known ore provinces. Here we report the occurrence of major Pb-Ag-Au mineralization resulting from recent sub-surface replacement of supergene oxyhydroxides by carbonate and sulphide minerals. This is probably the largest documented occurrence of recent microbial activity producing an ore assemblage previously unknown in supergene mineralizing environments. The presence of microbial features in the sulphides suggests that these may be the first-described natural bacteriomorphs of galena. The low δ13C values of the carbonate minerals indicate formation by deep anaerobic microbial processes. Sulphur isotope values of sulphides are interpreted here as reflecting microbial reduction in a system impoverished in sulphate. We suggest that biogenic activity has produced around 3.1 × 109 moles of reduced sulphur and 1010 moles of CO2, promoting the formation of ca. 1.19 Mt of carbonates, 114,000 t of galena, 638 t of silver sulphides and 6.5 t of gold.

Investigation of an alpine ice cave in Austria with the EXOMARS WISDOM GPR

NASA Astrophysics Data System (ADS)

Ciarletti, Valerie; Clifford, Stephen; Plettemeier, Dirk; Dorizon, Sophie; Statz, Christoph; Lustrement, Benjamin; Humeau, Olivier; Hassen-Khodja, Rafik; Galic, Alexandre; Cais, Philippe

2013-04-01

The WISDOM (Water Ice Subsurface Deposit Observations on Mars) Ground Penetrating Radar (GPR) is among the instruments selected as part of ESA's 2018 ExoMars Rover mission, whose scientific objectives are to search for signs of past and present life and to investigate the planet's subsurface. Combined with the rover, the GPR will provide high resolution observations of the structure of the shallow subsurface and assist in the identification and location of sedimentary layers or massive ice deposits, where organic molecules are the most likely to be found and well-preserved. The resulting data sets will also be a valuable tool for determining the nature, location and extent of potential targets for drilling. WISDOM prototypes, representative of the final flight model, are currently being field tested in various Mars analogue and cold-climate environments. In April 2012, members of the WISDOM team brought two development prototypes to an Alpine ice cave in Dachstein, Austria, to field test the instrument and participate in the Mars Simulation organized by the Austrian Space Forum. The GPRs were tested on 3 different platforms including the radio-controlled "Magma White" Rover from ABM Space Education in Poland. Radar investigations were conducted in four different cave environments, measuring ice thickness, stratigraphy, fracture geometry, and basal topography. Data sets processed and analyzed prove to be in agreement with the shallow environment characteristics determined by direct observation and previously obtained with commercial GPRs. From a geoelectrical point of view, massive ice containing a small amount of impurities can be approximate as a rather homogeneous medium. A massive ice unit will appear on a radargram as an area with no noticeable signal return, due to the little backscattered signal. Ice is also a low conductivity medium which leads to a deep penetration of the electromagnetic waves. The radargrams obtained from WISDOM data are consistent with those features. Deep and strong reflections can be observed from single scattered embedded in the ice or from interfaces below the ice unit. The wave velocity and thus the depth and the real permittivity values can be retrieved using individual reflectors' signature (hyperbolic shape) or the estimated reflection coefficient in case of a flat and smooth interface between a known material (air for example) and ice. Because of variations in fracture width, density and orientation, determining fracture geometry is the most challenging task among the retrieval of the other characteristics. The radar-derived 2- and 3-D reconstructions of the internal characteristics of the ice deposits and cave floor seem yet to be consistent with the observations. Additional field investigations, conducted in a wide variety of simulated and natural cold environments, are planned to build a database of well-characterized ice-rich terrestrial environments and improve our ability to characterize them. A more detailed discussion of these field results is currently in preparation.

Spatial Autocorrelation, Source Water and the Distribution of Total and Viable Microbial Abundances within a Crystalline Formation to a Depth of 800 m

PubMed Central

Beaton, E. D.; Stuart, Marilyne; Stroes-Gascoyne, Sim; King-Sharp, Karen J.; Gurban, Ioana; Festarini, Amy; Chen, Hui Q.

2017-01-01

Proposed radioactive waste repositories require long residence times within deep geological settings for which we have little knowledge of local or regional subsurface dynamics that could affect the transport of hazardous species over the period of radioactive decay. Given the role of microbial processes on element speciation and transport, knowledge and understanding of local microbial ecology within geological formations being considered as host formations can aid predictions for long term safety. In this relatively unexplored environment, sampling opportunities are few and opportunistic. We combined the data collected for geochemistry and microbial abundances from multiple sampling opportunities from within a proposed host formation and performed multivariate mixing and mass balance (M3) modeling, spatial analysis and generalized linear modeling to address whether recharge can explain how subsurface communities assemble within fracture water obtained from multiple saturated fractures accessed by boreholes drilled into the crystalline formation underlying the Chalk River Laboratories site (Deep River, ON, Canada). We found that three possible source waters, each of meteoric origin, explained 97% of the samples, these are: modern recharge, recharge from the period of the Laurentide ice sheet retreat (ca. ∼12000 years before present) and a putative saline source assigned as Champlain Sea (also ca. 12000 years before present). The distributed microbial abundances and geochemistry provide a conceptual model of two distinct regions within the subsurface associated with bicarbonate – used as a proxy for modern recharge – and manganese; these regions occur at depths relevant to a proposed repository within the formation. At the scale of sampling, the associated spatial autocorrelation means that abundances linked with geochemistry were not unambiguously discerned, although fine scale Moran’s eigenvector map (MEM) coefficients were correlated with the abundance data and suggest the action of localized processes possibly associated with the manganese and sulfate content of the fracture water. PMID:28974945

Metabolic potential of a Novel Gram-Negative, Spore-forming, and Putatively Sulfate-Reducing Bacterium in the Continental Subsurface

NASA Astrophysics Data System (ADS)

Lau, C. Y. M.; Becraft, E. D.; Cason, E. D.; Borgonie, G.; Kieft, T. L.; Li, L.; van Heerden, E.; Jarett, J.; Woyke, T.; Stepanauskas, R.; Onstott, T. C.

2017-12-01

Anaerobic sulfate reduction is among the most thermodynamically favorable biochemical reactions in the deep subsurface environments. Phylogenetically and functionally diverse sulfate-reducing bacteria (SRB) within Deltaproteobacteria and Firmicutes have been reported. However, only few of them have been isolated in pure cultures for detailed physiological characterization. Previous studies showed that fracture fluid samples from the 1 km-deep borehole DR5IPC (Driefontein gold mine, South Africa) harbored novel SRB, as indicated by the low percentages (84% and 90%) of identity of the 16S ribosomal RNA clone sequences to known SRB. To overcome the challenge of low cultivability, we employed next-generation sequencing to unveil the metabolic potential of these novel SRB. Metagenomic assembly and binning yielded seven >50% complete genomes including a methylotrophic SRB belonging to Deltaproteobacteria (DR5_3) and two draft genomes representing an uncultivated phylum, tentatively "Driefonteinae" (DR5_4 and DR5_5). They accounted for 3%, 2% and 18% of all metagenomic reads. Three single-cell assembled genomes (SAGs) sharing 99% of average nucleotide identity (ANI) with DR5_5 were obtained. Analysis of the protein-coding genes in DR5_5 and related SAGs indicated that "Driefonteinae" possesses dissimilatory sulfite reductase genes (dsrAB), suggesting that sulfate would be the terminal electron acceptor. Whereas it may use diverse electron acceptors such as carbon monoxide, acetate, lactate and formate. A near-complete collection of genes for Wood-Ljungdahl pathway and genes for partial pentose phosphate pathway, glycolysis and tricarboxylic acid cycle further showed that "Driefonteinae" may live a mixotrophic life style. It is evident that archaeal genes related to methanogens were acquired through horizontal gene transfer. Phenotypically, "Driefonteinae" has a Gram-negative cell wall and flagella. The ability of forming spores would enable this microorganism to endure adverse conditions. Genomic analysis has provided an invaluable avenue to reveal novel microbial players in the subsurface sulfur cycle.

Borehole geophysical logs at Naval Weapons Industrial Reserve Plant, Dallas, Texas

USGS Publications Warehouse

Braun, Christopher L.; Anaya, Roberto; Kuniansky, Eve L.

2000-01-01

A shallow alluvial aquifer at the Naval Weapons Industrial Reserve Plant near Dallas, Texas, has been contaminated by organic solvents used in the fabrication and assembly of aircraft and aircraft parts. Natural gamma-ray and electromagnetic-induction borehole geophysical logs were obtained from 162 poly vinyl-chloride-cased wells at the plant and were integrated with existing lithologic data to improve site characterization of the subsurface alluvium. Software was developed for filtering and classifying the log data and for processing, analyzing, and creating graphical output of the digital data. The alluvium consists of mostly fine-grained low-permeability sediments; however for this study, the alluvium was classified into low, intermediate, and high clay-content sediments on the basis of the gamma-ray logs. The low clay-content sediments were interpreted as being relatively permeable, whereas the high clay-content sediments were interpreted as being relatively impermeable. Simple statistics were used to identify zones of potentially contaminated sediments on the basis of the gamma-ray log classifications and the electromagnetic-induction log conductivity data.

Fe-SAPONITE and Chlorite Growth on Stainless Steel in Hydrothermal Engineered Barrier Experiments

NASA Astrophysics Data System (ADS)

Cheshire, M. C.; Caporuscio, F. A.; McCarney, M.

2012-12-01

The United States recently has initiated the Used Fuel Disposition campaign to evaluate various generic geological repositories for the disposal of high-level, spent nuclear fuel within environments ranging from hard-rock, salt/clay, to deep borehole settings. Previous work describing Engineered Barrier Systems (EBS) for repositories focused on low temperature and pressure conditions. The focus of this experimental work is to characterize the stability and alteration of a bentonite-based EBS with different waste container materials in brine at higher heat loads and pressures. All experiments were run at ~150 bar and 125 to 300 C for ~1 month. Unprocessed bentonite from Colony, Wyoming was used in the experiments as the clay buffer material. The redox conditions for each system were buffered along the magnetite-iron oxygen fugacity univariant curve using Fe3O4 and Feo filings. A K-Na-Ca-Cl-based salt solution was chosen to replicate deep groundwater compositions. The experimental mixtures were 1) salt solution-clay; 2) salt solution -clay-304 stainless steel; and 3) salt solution -clay-316 stainless steel with a water/bentonite ratio of ~9. Mineralogy and aqueous geochemistry of each experiment was evaluated to monitor the reactions that took place. No smectite illitization was observed in these reactions. However, it appears that K-smectite was produced, possibly providing a precursor to illitization. It is unclear whether reaction times were sufficient for bentonite illitization at 212 and 300 C or whether conditions conducive to illite formation were obtained. The more notable clay mineral reactions occurred at the stainless steel surfaces. Authigenic chlorite and Fe-saponite grew with their basal planes near perpendicular to the steel plate, forming a 10 - 40 μm thick 'corrosion' layer. Partial dissolution of the steel plates was the likely iron source for chlorite/saponite formation; however, dissolution of the Feo/Fe3O4 may also have acted as an iron source, with the steel plates acting as a substrate for chlorite/saponite growth. Trace amounts of pyrite in the bentonite appeared to have reacted to form H2S gas and pentlandite ((Ni,Fe)8S9). Mineral growth on the waste containers was influenced by the container, buffer, and fluid compositions, in addition to pressure and temperature conditions. No significant mineralogical changes were apparent away from the steel-smectite interface. Results of this research show that the waste container may act as a substrate for mineral growth in response to corrosion. However, it is presently unknown whether chlorite and Fe-saponite will act as passivating agents or whether their presence will facilitate further corrosion of the waste containers. The role of these Fe-rich minerals on the stability of steel canisters at elevated heat loads is currently under investigation. LA-UR-12-23845

Ecohydrology of Deep Fractured Rocks at Homestake DUSEL

NASA Astrophysics Data System (ADS)

Kieft, T. L.; Boutt, D. F.; Murdoch, L. C.; Wang, H. F.

2009-12-01

The Deep Underground Science and Engineering Laboratory (DUSEL) at Homestake in SD will provide an unprecedented opportunity to study the terrestrial subsurface. Such a study could fundamentally change the way we view the origin and early evolution of life on Earth, the search for novel materials, and the generation of energy. Knowledge of subsurface life has come from only a few boreholes and deep mines. DUSEL will enable the first detailed study of a deep ecosystem in the context of the hydrology, geochemistry, and rock system state that sustain it. We are guided by the over-arching question: What controls the distribution and evolution of subsurface life? Our hypothesis is that these controls are dominated by processes related to geology, geochemistry, geomechanics, and hydrology. Themes of scaling and the development of facies, or zones of similar characteristics cut across all the processes. The ecohydrologic setting of DUSEL Homestake is characterized by a vast expanse of fractured metamorphic rock cut by 100s of km of tunnels and boreholes. Many km3 of the region have been highly affected by mining activities; adjacent regions are partially desaturated; and more distal regions are pristine and presumed to harbor indigenous microbial ecosystems. Simulations along with descriptions of the mine suggest division into zones, or ecohydrologic facies, where essential characteristics related to the requirements for life are expected to be similar. These ecohydrologic facies are a primary organizing principle for our investigation. The Deep EcoHydrology Experiment will consist of field studies supported by numerical simulations. The experimental activities include a particularly exciting opportunity to probe the lower limits of the biosphere using deep drilling technology deployed from the lowest reaches of the facility (2440 m below the surface). The use of the flooding/dewatering event as a tracer combined with hydrologic and mechanical stressors form a theme that cuts across many of the experimental activities. Five key experimental activities have been identified that will enable motivating hypotheses to be tested: 1) Initial Characterization, 2) Flow System, 3) Stress and Deformation, 4) Exploration, and 5) Cross-cutting activities. The International Continental Drilling Program has approved a preproposal for an ICDP ecohydrology project at DUSEL. The development of a long-term deep geosciences observatory at the Homestake DUSEL will revolutionize the field of deep sub-surface ecohydrology. The opportunities for young scientists and international participation in such a facility will be tremendous. Results from the work will have wide ranging implications as 20% of the current earth’s surface consists of a similar geologic setting. DUSEL will also facilitate experiential learning for K-12 through graduate school students working alongside world-class geoscientists.

Modeling Subsurface Behavior at the System Level: Considerations and a Path Forward

NASA Astrophysics Data System (ADS)

Geesey, G.

2005-12-01

The subsurface is an obscure but essential resource to life on Earth. It is an important region for carbon production and sequestration, a source and reservoir for energy, minerals and metals and potable water. There is a growing need to better understand subsurface possesses that control the exploitation and security of these resources. Our best models often fail to predict these processes at the field scale because of limited understanding of 1) the processes and the controlling parameters, 2) how processes are coupled at the field scale 3) geological heterogeneities that control hydrological, geochemical and microbiological processes at the field scale and 4) lack of data sets to calibrate and validate numerical models. There is a need for experimental data obtained at scales larger than those obtained at the laboratory bench that take into account the influence of hydrodynamics, geochemical reactions including complexation and chelation/adsorption/precipitation/ion exchange/oxidation-reduction/colloid formation and dissolution, and reactions of microbial origin. Furthermore, the coupling of each of these processes and reactions needs to be evaluated experimentally at a scale that produces data that can be used to calibrate numerical models so that they accurately describe field scale system behavior. Establishing the relevant experimental scale for collection of data from coupled processes remains a challenge and will likely be process-dependent and involve iterations of experimentation and data collection at different intermediate scales until the models calibrated with the appropriate date sets achieve an acceptable level of performance. Assuming that the geophysicists will soon develop technologies to define geological heterogeneities over a wide range of scales in the subsurface, geochemists need to continue to develop techniques to remotely measure abiotic reactions, while geomicrobiologists need to continue their development of complementary technologies to remotely measure microbial community parameters that define their key functions at a scale that accurately reflects their role in large scale subsurface system behavior. The practical questions that geomicrobiologist must answer in the short term are: 1) What is known about the activities of the dominant microbial populations or those of their closest relatives? 2) Which of these activities is likely to dominate under in situ conditions? In the process of answering these questions, researchers will obtain answers to questions of a more fundamental nature such as 1) How deep does "active" life extend below the surface of the seafloor and terrestrial subsurface? 2) How are electrons exchanged between microbial cells and solid phase minerals? 3) What is the metabolic state and mechanism of survival of "inactive" life forms in the subsurface? 4) What can genomes of life forms trapped in geological material tell us about evolution of life that current methods cannot? The subsurface environment represents a challenging environment to understand and model. As the need to understand subsurface processes increases and the technologies to characterize them become available, modeling subsurface behavior will approach the level of sophistication of models used today to predict behavior of other large scale systems such as the oceans.

REASON for Europa

NASA Astrophysics Data System (ADS)

Patterson, Gerald Wesley; Blankenship, Don; Moussessian, Alina; Plaut, Jeffrey; Gim, Yonggyu; Schroeder, Dustin; Soderlund, Krista; Grima, Cyril; Chapin, Elaine

2015-11-01

The science goal of the Europa multiple flyby mission is to “explore Europa to investigate its habitability”. One of the primary instruments selected for the scientific payload is a multi-frequency, multi-channel ice penetrating radar system. This “Radar for Europa Assessment and Sounding: Ocean to Near-surface (REASON)” would revolutionize our understanding of Europa’s ice shell by providing the first direct measurements of its surface character and subsurface structure. REASON will address key questions regarding Europa’s habitability, including the existence of any liquid water, through the innovative use of radar sounding, altimetry, reflectometry, and plasma/particles analyses. These investigations require a dual-frequency radar (HF and VHF frequencies) instrument with simultaneous shallow and deep sounding that is designed for performance robustness in the challenging environment of Europa. The flyby-centric mission configuration is an opportunity to collect and transmit minimally processed data back to Earth and exploit advanced processing approaches developed for terrestrial airborne data sets. The observation and characterization of subsurface features beneath Europa’s chaotic surface requires discriminating abundant surface clutter from a relatively weak subsurface signal. Finally, the mission plan also includes using REASON as a nadir altimeter capable of measuring tides to test ice shell and ocean hypotheses as well as characterizing roughness across the surface statistically to identify potential follow-on landing sites. We will present a variety of measurement concepts for addressing these challenges.

REASON for Europa

NASA Astrophysics Data System (ADS)

Moussessian, A.; Blankenship, D. D.; Plaut, J. J.; Patterson, G. W.; Gim, Y.; Schroeder, D. M.; Soderlund, K. M.; Grima, C.; Young, D. A.; Chapin, E.

2015-12-01

The science goal of the Europa multiple flyby mission is to "explore Europa to investigate its habitability". One of the primary instruments selected for the scientific payload is a multi-frequency, multi-channel ice penetrating radar system. This "Radar for Europa Assessment and Sounding: Ocean to Near-surface (REASON)" would revolutionize our understanding of Europa's ice shell by providing the first direct measurements of its surface character and subsurface structure. REASON addresses key questions regarding Europa's habitability, including the existence of any liquid water, through the innovative use of radar sounding, altimetry, reflectometry, and plasma/particles analyses. These investigations require a dual-frequency radar (HF and VHF frequencies) instrument with concurrent shallow and deep sounding that is designed for performance robustness in the challenging environment of Europa. The flyby-centric mission configuration is an opportunity to collect and transmit minimally processed data back to Earth and exploit advanced processing approaches developed for terrestrial airborne data sets. The observation and characterization of subsurface features beneath Europa's chaotic surface require discriminating abundant surface clutter from a relatively weak subsurface signal. Finally, the mission plan also includes using REASON as a nadir altimeter capable of measuring tides to test ice shell and ocean hypotheses as well as characterizing roughness across the surface statistically to identify potential follow-on landing sites. We will present a variety of measurement concepts for addressing these challenges.

Actinobacterial diversity across a marine transgression in the deep subsurface off Shimokita Peninsula, Japan

NASA Astrophysics Data System (ADS)

Harrison, B. K.; Bailey, J. V.

2013-12-01

Sediment horizons represent a significant - but not permanent - barrier to microbial transport. Cells commonly attach to mineral surfaces in unconsolidated sediments. However, by taxis, growth, or passive migration under advecting fluids, some portion of the microbial community may transgress sedimentary boundaries. Few studies have attempted to constrain such transport of community signatures in the marine subsurface and its potential impact on biogeography. Integrated Ocean Drilling Program (IODP) Expedition 337 off the Shimokita Peninsula recovered sediments over a greater than 1km interval representing a gradual decrease of terrestrial influence, from tidal to continental shelf depositional settings. This sequence represents a key opportunity to link subsurface microbial communities to lithological variability and investigate the permanence of community signatures characteristic of distinct depositional regimes. The phylogenetic connectivity between marine and terrestrially-influenced deposits may demonstrate to what degree sediments offer a substantial barrier to cell transport in the subsurface. Previous work has demonstrated that the Actinobacterial phylum is broadly distributed in marine sediments (Maldonado et al., 2005), present and active in the deep subsurface (Orsi et al., 2013), and that marine and terrestrial lineages may potentially be distinguished by 16S rRNA gene sequencing (e.g. Prieto-Davó et al., 2013). We report on Actinobacteria-specific 16S rRNA gene diversity recovered between 1370 and 2642 mbsf with high-throughput sequencing using the Illumina MiSeq platform, as well as selective assembly and analysis of environmental clone libraries.

Historical Perspectives in Frost Heave Research: The Early Works of S. Taber and G. Beskow

DTIC Science & Technology

1991-12-01

beginning of freezing. In addition, if the quite efficiently plowed by motor power, the effect of different types of soils are separated by a sharp...frozen clay is not greater than unfro- efficient forthe coarse soils (sand) in adry condition can zen clay, but in coarser soils, the coefficient of con...will reduce the heaving and smooth and slopes slightly outwards with depth. Forex - eliminate the frost boils. Of course, the effect of deep ample

Geologic investigation of Playa Lakes, Tonopah Test Range, Nevada : data report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rautman, Christopher Arthur

Subsurface geological investigations have been conducted at two large playa lakes at the Tonopah Test Range in central Nevada. These characterization activities were intended to provide basic stratigraphic-framework information regarding the lateral distribution of ''hard'' and ''soft'' sedimentary materials for use in defining suitable target regions for penetration testing. Both downhole geophysical measurements and macroscopic lithilogic descriptions were used as a surrogate for quantitative mechanical-strength properties, although some quantitative laboratory strength measurements were obtained as well. Both rotary (71) and core (19) holes on a systematic grid were drilled in the southern half of the Main Lake; drill hole spacingsmore » are 300 ft north-south and 500-ft east-west. The drilled region overlaps a previous cone-penetrometer survey that also addressed the distribution of hard and soft material. Holes were drilled to a depth of 40 ft and logged using both geologic examination and down-hole geophysical surveying. The data identify a large complex of very coarse-grained sediment (clasts up to 8 mm) with interbedded finer-grained sands, silts and clays, underlying a fairly uniform layer of silty clay 6 to 12 ft thick. Geophysical densities of the course-grained materials exceed 2.0 g/cm{sup 2}, and this petrophysical value appears to be a valid discriminator of hard vs. soft sediments in the subsurface. Thirty-four holes, including both core and rotary drilling, were drilled on a portion of the much larger Antelope Lake. A set of pre-drilling geophysical surveys, including time-domain electromagnetic methods, galvanic resistivity soundings, and terrain-conductivity surveying, was used to identify the gross distribution of conductive and resistive facies with respect to the present lake outline. Conductive areas were postulated to represent softer, clay-rich sediments with larger amounts of contained conductive ground water. Initial drilling, consisting of cored drill holes to 100-ft (33-m) depth, confirmed both the specific surface geophysical measurements and the more general geophysical model of the subsurface lake facies. Good agreement of conductive regions with drill holes containing little to no coarse-grained sediments was observed, and vice-versa. A second phase of grid drilling on approximately 300-ft (100-m) centers was targeted a delineating a region of sufficient size containing essentially no coarse-grained ''hard'' material. Such a region was identified in the southwestern portion of Antelope Lake.« less

Water resources and hydrology of Mars

NASA Technical Reports Server (NTRS)

Baker, V. R.; Gulick, V. C.; Kargel, J. S.; Strom, R. G.

1991-01-01

The surface of Mars has been extensively modified by a large variety of water erosional and depositional processes. Although liquid water is presently unstable on the planet's surface, in its cold, hyperarid climate, there is abundant geomorphological evidence of past fluvial valley development multiple episodes of catastrophic flooding, periglacial landforms, ice-related permafrost, lake deposits, eroded impact craters and possible glacial landforms throughout much of Mars' geological history. The amount of water required to form such features is estimated to be equivalent to a planet-wide layer approximately 50 meters deep. Some of this water undoubtedly was removed from the planet by atmospheric escape processes, but much probably remains in the subsurface of Mars. Jakosky summarized the present partitioning of water on Mars, expressed as an average global depth, as follows: in the polar caps, 30 meters; in the megaregolith, 500 to 1000 meters; structurally bound in clays, 10 meters; and in high latitude regolith, a few meters. However, most of this water is probably in the form of ice, except in anomalous areas of possible near surface liquid water, and in regions where hydrothermal systems are still active. The best locations for prospecting are those areas where water or ice is sufficiently concentrated at shallow enough depths to make it feasible to pump out or mine.

Shale characterization in mass transport complex as a potential source rock: An example from onshore West Java Basin, Indonesia

NASA Astrophysics Data System (ADS)

Nugraha, A. M. S.; Widiarti, R.; Kusumah, E. P.

2017-12-01

This study describes a deep-water slump facies shale of the Early Miocene Jatiluhur/Cibulakan Formation to understand its potential as a source rock in an active tectonic region, the onshore West Java. The formation is equivalent with the Gumai Formation, which has been well-known as another prolific source rock besides the Oligocene Talang Akar Formation in North West Java Basin, Indonesia. The equivalent shale formation is expected to have same potential source rock towards the onshore of Central Java. The shale samples were taken onshore, 150 km away from the basin. The shale must be rich of organic matter, have good quality of kerogen, and thermally matured to be categorized as a potential source rock. Investigations from petrography, X-Ray diffractions (XRD), and backscattered electron show heterogeneous mineralogy in the shales. The mineralogy consists of clay minerals, minor quartz, muscovite, calcite, chlorite, clinopyroxene, and other weathered minerals. This composition makes the shale more brittle. Scanning Electron Microscope (SEM) analysis indicate secondary porosities and microstructures. Total Organic Carbon (TOC) shows 0.8-1.1 wt%, compared to the basinal shale 1.5-8 wt%. The shale properties from this outcropped formation indicate a good potential source rock that can be found in the subsurface area with better quality and maturity.

Characterization of microbial communities in subsurface nuclear blast cavities of the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moser, Duane P; Czerwinski, Ken; Russell, Charles E

2010-07-13

This US Department of Energy (DOE) Environmental Remediation Sciences Project (ERSP) was designed to test fundamental hypotheses concerning the existence and nature of indigenous microbial populations of Nevada Test Site subsurface nuclear test/detonation cavities. Now called Subsurface Biogeochemical Research (SBR), this program's Exploratory Research (ER) element, which funded this research, is designed to support high risk, high potential reward projects. Here, five cavities (GASCON, CHANCELLOR, NASH, ALEMAN, and ALMENDRO) and one tunnel (U12N) were sampled using bailers or pumps. Molecular and cultivation-based techniques revealed bacterial signatures at five sites (CHANCELLOR may be lifeless). SSU rRNA gene libraries contained diverse andmore » divergent microbial sequences affiliated with known metal- and sulfur-cycling microorganisms, organic compound degraders, microorganisms from deep mines, and bacteria involved in selenate reduction and arsenite oxidation. Close relatives of Desulforudis audaxviator, a microorganism thought to subsist in the terrestrial deep subsurface on H2 and SO42- produced by radiochemical reactions, was detected in the tunnel waters. NTS-specific media formulations were used to culture and quantify nitrate-, sulfate-, iron-reducing, fermentative, and methanogenic microorganisms. Given that redox manipulations mediated by microorganisms can impact the mobility of DOE contaminants, our results should have implications for management strategies at this and other DOE sites.« less

Characterization of Microbial Communities in Subsurface Nuclear Blast Cavities of the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moser, Duane P.; Bruckner, Jim; Fisher, Jen

2010-09-01

This U.S. Department of Energy (DOE) Environmental Remediation Sciences Project (ERSP) was designed to test fundamental hypotheses concerning the existence and nature of indigenous microbial populations of Nevada Test Site subsurface nuclear test/detonation cavities. Now called Subsurface Biogeochemical Research (SBR), this program’s Exploratory Research (ER) element, which funded this research, is designed to support high risk, high potential reward projects. Here, five cavities (GASCON, CHANCELLOR, NASH, ALEMAN, and ALMENDRO) and one tunnel (U12N) were sampled using bailers or pumps. Molecular and cultivation-based techniques revealed bacterial signatures at five sites (CHANCELLOR may be lifeless). SSU rRNA gene libraries contained diverse andmore » divergent microbial sequences affiliated with known metal- and sulfur-cycling microorganisms, organic compound degraders, microorganisms from deep mines, and bacteria involved in selenate reduction and arsenite oxidation. Close relatives of Desulforudis audaxviator, a microorganism thought to subsist in the terrestrial deep subsurface on H2 and SO42- produced by radiochemical reactions, was detected in the tunnel waters. NTS-specific media formulations were used to culture and quantify nitrate-, sulfate-, iron-reducing, fermentative, and methanogenic microorganisms. Given that redox manipulations mediated by microorganisms can impact the mobility of DOE contaminants, our results should have implications for management strategies at this and other DOE sites.« less

Calcium isotope evidence for suppression of carbonate dissolution in carbonate-bearing organic-rich sediments

NASA Astrophysics Data System (ADS)

Turchyn, Alexandra V.; DePaolo, Donald J.

2011-11-01

Pore fluid calcium isotope, calcium concentration and strontium concentration data are used to measure the rates of diagenetic dissolution and precipitation of calcite in deep-sea sediments containing abundant clay and organic material. This type of study of deep-sea sediment diagenesis provides unique information about the ultra-slow chemical reactions that occur in natural marine sediments that affect global geochemical cycles and the preservation of paleo-environmental information in carbonate fossils. For this study, calcium isotope ratios (δ 44/40Ca) of pore fluid calcium from Ocean Drilling Program (ODP) Sites 984 (North Atlantic) and 1082 (off the coast of West Africa) were measured to augment available pore fluid measurements of calcium and strontium concentration. Both study sites have high sedimentation rates and support quantitative sulfate reduction, methanogenesis and anaerobic methane oxidation. The pattern of change of δ 44/40Ca of pore fluid calcium versus depth at Sites 984 and 1082 differs markedly from that of previously studied deep-sea Sites like 590B and 807, which are composed of nearly pure carbonate sediment. In the 984 and 1082 pore fluids, δ 44/40Ca remains elevated near seawater values deep in the sediments, rather than shifting rapidly toward the δ 44/40Ca of carbonate solids. This observation indicates that the rate of calcite dissolution is far lower than at previously studied carbonate-rich sites. The data are fit using a numerical model, as well as more approximate analytical models, to estimate the rates of carbonate dissolution and precipitation and the relationship of these rates to the abundance of clay and organic material. Our models give mutually consistent results and indicate that calcite dissolution rates at Sites 984 and 1082 are roughly two orders of magnitude lower than at previously studied carbonate-rich sites, and the rate correlates with the abundance of clay. Our calculated rates are conservative for these sites (the actual rates could be significantly slower) because other processes that impact the calcium isotope composition of sedimentary pore fluid have not been included. The results provide direct geochemical evidence for the anecdotal observation that the best-preserved carbonate fossils are often found in clay or organic-rich sedimentary horizons. The results also suggest that the presence of clay minerals has a strong passivating effect on the surfaces of biogenic carbonate minerals, slowing dissolution dramatically even in relation to the already-slow rates typical of carbonate-rich sediments.

Archaeometrical analyses demonstrates that humans excavated clay from mardels on the Luxembourger Gutland plateau to produce ceramics.

NASA Astrophysics Data System (ADS)

Vanmourik, Jan; Braekmans, Dennis

2017-04-01

Mardels, small closed depressions, are distinctive landforms on the Luxembourger Gutland plateau. In the present landscape most mardels are shallow fens, filled with colluvial sediments. Slotboom (1963) investigated 108 mardels in the Luxembourger Gutland and ascribed the mardels in the Luxembourger Keuper marl formations to subsurface solution of gypsum inclusions, followed by collapse and subsidence of the overlying beds. The colluvial deposits in the mardels were palynologically dated as Post Roman. Schmalen (2001) published an actualized inventory of mardels in the Gutland. This inventory includes also mardels on the Lias marls, a formation without gypsum inclusions. Etienne et al. (2011) considered beside natural processes also anthropogenic factors as explanation for CD's in the Lorraine landscape. The sediments in the majority of the CD's were palynologically dated as Post Roman. Combined with the open character of the local vegetation this suggest that the majority of the mardels are probably abandoned Roman quarries. Slotboom and van Mourik (2015) showed that the fillings of the mardels on the Lias marls are Post-Roman, just as on the Keuper marls. To answer the question "are mardels natural subsidence basins or abandoned quarries" we need additional information from the soil archives. Firstly we must identify the process, responsible for the deposition of clay in the mardels. The majority of the mardels in the Gutland occur in clusters in deciduous forests. Earthworm activity in the forest soils promote lateral clay leaching and soil erosion and mardels function as sediment traps. Due to this process clay with the best properties for the production of ceramics occurred in mardels. This process was active during the whole Holocene. It is striking that we did not find Pre-Roman but only Post-Roman mardel fillings. Secondly we need information about the practice of clay, excavated from mardels. If mardels are really abandoned quarries, the excavated sediments must have been used, most probably for the production of ceramics. If we can find relicts of ceramics in the vicinity of mardels we can compare the composition of these ceramics with mardel clay. We could collect finds of Roman tile-works on the Lias marls (Kalefeld) and of Roman pottery on the Keuper marls (Biischtert) in the vicinity of mardels. Provenance analysis (XRF) demonstrated the similarity of chemical composition of mardel clay and ceramics. This indicates that the mardels on the Gutland plateau developed initially as natural depressions (sediment traps), on Strassen marls related to soil subsidence, caused by joints in the underlying Luxembourger sandstone, on Keuper marls to subsidence after soil subsurface dissolving of gypsum veins. The colluvial clay was used by the Romans for the production of ceramics. Due to the excavation reached the actual seizes. Colluvial clay accumulation restarted in the abandoned quarries. • Slotboom, R.T. (1963) Comparative geomorphological and palynological investigation of the pingos (Viviers) in the Haute Fagnes (Belgium) and the Mardellen in the Gutland (Luxembourg). Zeitschrift für Geomorphologie 7: 193-231. • Schmalen, C. (2002) Einige Mardellen Luxemburgs auf den Keuper-und Liasschichten des Forstamtbezirks Zentrum. Diplomarbeit in Studiengang Umweltplannung an der Fachhochschule Trier, Standort Birkenfeld, 2002. • Etienne, D., Ruffaldi, P., Goepp, S., Ritz, F., Georges-Leroy, M., Pollier, B., Dambrine, E. (2011) The origin of closed depressions in Northeastern France: A new assessment. Geomorphology 126: 121-131. • Slotboom, R.T., van Mourik, J.M. (2015) Pollen records of mardel deposits; the effects of climatic oscillations and land management on soil erosion in Gutland, Luxembourg. Catena 132 (2015) 72-88.

Subsurface Biodegradation in a Fractured Basement Reservoir, Shropshire, UK

NASA Astrophysics Data System (ADS)

Parnell, John; Baba, Mas'ud; Bowden, Stephen; Muirhead, David

2017-04-01

Subsurface Biodegradation in a Fractured Basement Reservoir, Shropshire, UK. John Parnell, Mas'ud Baba, Stephen Bowden, David Muirhead Subsurface biodegradation in current oil reservoirs is well established, but there are few examples of fossil subsurface degradation. Biomarker compositions of viscous and solid oil residues ('bitumen') in fractured Precambrian and other basement rocks below the Carboniferous cover in Shropshire, UK, show that they are variably biodegraded. High levels of 25-norhopanes imply that degradation occurred in the subsurface. Lower levels of 25-norhopanes occur in active seepages. Liquid oil trapped in fluid inclusions in mineral veins in the fractured basement confirm that the oil was emplaced fresh before subsurface degradation. A Triassic age for the veins implies a 200 million year history of hydrocarbon migration in the basement rocks. The data record microbial colonization of a fractured basement reservoir, and add to evidence in modern basement aquifers for microbial activity in deep fracture systems. Buried basement highs may be especially favourable to colonization, through channelling fluid flow to shallow depths and relatively low temperatures

Lithofacies variability in the Lower Khvalynian sediments of the North Caspian Sea region.

NASA Astrophysics Data System (ADS)

Makshaev, Radik; Svitoch, Aleksandr

2016-04-01

The Early Khvalynian period (~15 500-12 500 cal years B.P.) is characterized by continuous dynamic changes in North Caspian Sea region environment, which has been confirmed by numerous data obtained during the lithofacies analysis of its key sections. Lithofacies complex of the North Caspian Sea region contains four subfacies - clayey, laminated, sandy-clayey and aleurite-clayey. Clayey facie is characterized by absolutely clayey structure with massive nonlamellated or subfissile dark-brown clays and rarely contains thin aleurite layers. This subfacie is one of the most widespread in the North Caspian Sea region. Clayey facies are typical for the most of the key sections in the Middle Volga (Bykovo, Torgun, Rovnoe, Novoprivolnoe, Chapaevka), Lower Volga (Svetly Yar) and on the left side of the Volga River valley (Verkhny Baskunchak, Krivaya Loshchina, Bolshoy Liman). Deep paleodepressions of the Lower Volga and the left side of the Volga River valley are also characterized by the maximum of the average clays thickness, which can reach up to 10 m. Sandy-clayey subfacie is characterized by stratified structure with horizontal and lenticular lamination of clays with sandy-aleuritic interlayers. The average thickness of sand layers is 2-5 cm. At most of the key sections thickness of clay layers is up to twice larger than the sands layers and only on depressions' periphery can be exceeded by some terrigenous interlayers. Sandy-aleuritic parts of clays have different mineral structure. Light suite is dominated by quartz and feldspar with some debris of heavy minerals, glauconite and calcite. Fraction of the heavy minerals contains titano ferrite, epidote, granite, zircon, amphibole, rutile, disthene, tourmaline, sillimanite. Layered subfacie is the most abundant among the chocolate clays and is widespread in the Lower Volga River region and the Ural River valley, but sporadic in Kalmykia and the Volga Delta. Sandy-clayey and aleurit-clayey subfacies have rare distribution. Sandy-clayey subfacie (Raigorog section) contains two patches of clays, that are interbedded by thick sandy layer with khvalynian mollusks shells. Aleurite-clayey subfacie is typical for the upper part of the Volgian estuary (Chapaevka, Torgun). During the Early Khvalynian transgression only clayey-aleuritic deposits, which represent the Early Khvalynian period, accumulated in flooded territory of the Volga river valley. On the most part of investigated territory facies are presented by clays (chocolate clays), which are predominantly located in the middle part of the Early Khvalynian sections and constrained by sands with mollusk shells on its bottom and top. These facies are very common in the bottom part of the sections in the Lower Volga region, while in the Middle Volga region clays are dominated in all segments of the Khvalynian strata. But these clays can't be classified into an individual stratigraphic layer as they don't contain index mollusks and have different stratigraphic location. This work is supported by the RFBR (Project 14-05-00227) and the RSCF (Project 16-17-10103).

Coupling Genetic and Chemical Microbiome Profiling Reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms That Are Dominated by the Same Archaeal Species

PubMed Central

Holman, Hoi-Ying N.; DeSantis, Todd Z.; Wanner, Gerhard; Andersen, Gary L.; Perras, Alexandra K.; Meck, Sandra; Völkel, Jörg; Bechtel, Hans A.; Wirth, Reinhard; Moissl-Eichinger, Christine

2014-01-01

Earth harbors an enormous portion of subsurface microbial life, whose microbiome flux across geographical locations remains mainly unexplored due to difficult access to samples. Here, we investigated the microbiome relatedness of subsurface biofilms of two sulfidic springs in southeast Germany that have similar physical and chemical parameters and are fed by one deep groundwater current. Due to their unique hydrogeological setting these springs provide accessible windows to subsurface biofilms dominated by the same uncultivated archaeal species, called SM1 Euryarchaeon. Comparative analysis of infrared imaging spectra demonstrated great variations in archaeal membrane composition between biofilms of the two springs, suggesting different SM1 euryarchaeal strains of the same species at both aquifer outlets. This strain variation was supported by ultrastructural and metagenomic analyses of the archaeal biofilms, which included intergenic spacer region sequencing of the rRNA gene operon. At 16S rRNA gene level, PhyloChip G3 DNA microarray detected similar biofilm communities for archaea, but site-specific communities for bacteria. Both biofilms showed an enrichment of different deltaproteobacterial operational taxonomic units, whose families were, however, congruent as were their lipid spectra. Consequently, the function of the major proportion of the bacteriome appeared to be conserved across the geographic locations studied, which was confirmed by dsrB-directed quantitative PCR. Consequently, microbiome differences of these subsurface biofilms exist at subtle nuances for archaea (strain level variation) and at higher taxonomic levels for predominant bacteria without a substantial perturbation in bacteriome function. The results of this communication provide deep insight into the dynamics of subsurface microbial life and warrant its future investigation with regard to metabolic and genomic analyses. PMID:24971452

Deep sea authigenic clays as a sink for seawater Mg through the Cenozoic

NASA Astrophysics Data System (ADS)

Dunlea, A. G.; Murray, R. W.; Ramos, D. S.; Higgins, J. A.

2016-12-01

The most enigmatic sink of many elements in the global ocean is the formation of authigenic aluminosilicates. Pelagic clays cover 40% of the seafloor and "reverse weathering" type reactions within this lithology have the potential to be a large sink of seawater Mg and affect carbon cycling in the ocean. We use pelagic clays from Integrated Ocean Drilling Program Expedition 329 Site U1366 in the South Pacific Gyre to track authigenic aluminosilicates with two complementary methods: (1) Mg isotopic analyses, and (2) bulk sediment geochemistry with provenance modeling. Mg isotopic analyses of the bulk, unleached clay samples reveal isotopic values significantly heavier than average continental crust (δ26Mg = -0.1 to -0.3%o) indicating significant authigenic uptake. The bulk sediment geochemistry (i.e., major, trace, rare earth element concentrations) and multivariate statistical models of provenance determine the mass fraction of six different sediment sources that mixed to create the sediments: Fe/Mn-oxyhydroxides, apatite, excess Si, dust, and two altered volcanic ashes. A significant correlation between the mass fraction of one of the specific altered ash end-member and the δ26Mg signature allows us to characterize and track the abundance of the authigenic aluminosilicate component downcore. Trends in the provenance models suggest that the elements that compose the authigenic aluminosilicates may originate from volcanic ash, biogenic Si, and/or hydrothermal plume deposits. We examine variations in the spatial and temporal contributions of each of these sources and assess how these variations may have affected the amount of Mg authigenically consumed by deep sea authigenic clays through the Cenozoic. If the authigenic aluminosilicates are created by "reverse weathering" reactions, their formation also has important implications for carbon cycling in the global ocean.

Cooper River Rediversion Project. Lake Moultrie and Santee River, South Carolina. Powerhouse Foundation Analysis. Appendix A. Subsurface Exploration.

DTIC Science & Technology

1976-02-01

Pull f.31 -- - fissile bedded, Slakes 7 78.6’ t, 8.6’ -- 0 readily upon eposure to air. Ron 5.0’ R-C 5.0’ - 80 ~-- LAB CLASSIFICATION I S - ELEV...small ’A of i I glauconite and phosphite grains occasional seam & lense of stiff fat clay- P • fossil molds . 18.0 - 23.0 high of silty sand mixed in J

Water-level altitudes 2015 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2014 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas

USGS Publications Warehouse

Kasmarek, Mark C.; Ramage, Jason K.; Houston, Natalie A.; Johnson, Michaela R.; Schmidt, Tiffany S.

2015-01-01

Compaction of subsurface sediments (mostly in the fine-grained silt and clay layers) composing the Chicot and Evangeline aquifers was recorded continuously by using analog technology at the 13 borehole extensometers at 11 sites that were either activated or installed between 1973 and 1980. For the period of record beginning in 1973 (or later depending on activation or installation date) and ending in December 2014, measured cumulative compaction at the 13 extensometers ranged from 0.101 ft at the Texas City-Moses Lake extensometer to 3.668 ft at the Addicks extensometer. During 2014, a total of 10 of the 13 extensometers recorded a slight net decrease of land-surface elevation; the extensometers at the Lake Houston and Clear Lake (shallow) sites recorded slight net increases of land-surface elevation, and the extensometer at the Texas City-Moses Lake site recorded no change in elevation. The rate of compaction varies from site to site because of differences in rates of groundwater withdrawal in the areas adjacent to each extensometer site and differences among sites in the ratios of sand, silt, and clay and compressibilities of the subsurface sediments. It is not appropriate, therefore, to extrapolate or infer a rate of compaction for an adjacent area on the basis of the rate of compaction measured at nearby extensometers.

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

PubMed Central

Jungbluth, Sean P; Bowers, Robert M; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

2016-01-01

Although little is known regarding microbial life within our planet's rock-hosted deep subseafloor biosphere, boreholes drilled through deep ocean sediment and into the underlying basaltic crust provide invaluable windows of access that have been used previously to document the presence of microorganisms within fluids percolating through the deep ocean crust. In this study, the analysis of 1.7 million small subunit ribosomal RNA genes amplified and sequenced from marine sediment, bottom seawater and basalt-hosted deep subseafloor fluids that span multiple years and locations on the Juan de Fuca Ridge flank was used to quantitatively delineate a subseafloor microbiome comprised of distinct bacteria and archaea. Hot, anoxic crustal fluids tapped by newly installed seafloor sampling observatories at boreholes U1362A and U1362B contained abundant bacterial lineages of phylogenetically unique Nitrospirae, Aminicenantes, Calescamantes and Chloroflexi. Although less abundant, the domain Archaea was dominated by unique, uncultivated lineages of marine benthic group E, the Terrestrial Hot Spring Crenarchaeotic Group, the Bathyarchaeota and relatives of cultivated, sulfate-reducing Archaeoglobi. Consistent with recent geochemical measurements and bioenergetic predictions, the potential importance of methane cycling and sulfate reduction were imprinted within the basalt-hosted deep subseafloor crustal fluid microbial community. This unique window of access to the deep ocean subsurface basement reveals a microbial landscape that exhibits previously undetected spatial heterogeneity. PMID:26872042

The late Quaternary evolution of the Arno Coastal plain (northern Tuscany, Italy): unravelling the interplay between glacio-eustatic and tectonic signals.

NASA Astrophysics Data System (ADS)

Sarti, G.; Rossi, V.; Amorosi, A.; Ciampalini, A.; Molli, G.; Moretti, S.; Solari, L.

2016-12-01

Through the integration of sedimentological, radar interferometry and structural studies, a complex mid-late Quaternary coastal evolution related to Milankovitch-scale glacio-eustatic oscillations and local tectonics was reconstructed for the southern margin of the Arno coastal plain (APC, Tuscany, Italy). A set of 14C and ESR ages combined with SAR data, paleontological and archaeological proxy support the chronological framework. At a regional scale, the ACP straddles at the SW termination of a regional-scale fault, a crustal expression of lithospheric-scale tear segmenting the deep structure of the northern Apennines. GPS data, historical and present-day seismicity testify the activity of the fault zone. The thickness (up to 3000 m) and the age (Upper Miocene-Holocene) of the APC fill deposits reflect the accommodation space through time north of the Livorno-Sillaro line (LSL), in contrast to the recent uplifting documented south of the it. The uppermost 100 m of subsurface in the APC shows a Pleistocene incised-valley system (IVS), ca. 4 km wide and 45 m deep. The IVS fill is composed of floodplain clays passing upwards to estuarine deposits, dated to MIS 7. Above, a succession of amalgamated fluvial-channel sands record both depositional and erosional events of post-MIS 7 age. Upwards, a Holocene alluvial-deltaic succession overlies an indurated horizon related to a younger IVS system that formed at MIS 3/MIS 2 transition. The Holocene succession becomes thin in proximity of an isolated relief, Upper Pleistocene in age, rising up to 15 m above the present-day plain, ca. 6 km south of the Arno River. ERS and Envisat SAR data were acquired between the 1992 and the 2010 and processed by using the PSInSAR technique. The subsidence rates along the southern boundary of the ACP, reach 28 mm/y even if this data may be partially enhanced by water exploitation. Our results document that the transition between the subsiding and uplifting areas does not coincide with the traditionally defined surface trace of LSL, but is located ca. 20 km northward, close to the present day Arno river course. The complex interplay between sediment accumulation and erosional processes documented in the subsurface of ACP reflect changes in the eustatic rate, connected to the Milankovitch cyclicity, and local activity of the surface splay of LSL.

Clay and Shale Permeability at Lab to Regional Scale

NASA Astrophysics Data System (ADS)

Neuzil, C.

2017-12-01

Because clays, shales, and other clay-rich media tend to be only poorly permeable, and are laterally extensive and voluminous, they play key roles in problems as diverse as groundwater supply, waste confinement, exploitation of conventional and unconventional oil and gas, and deformation and failure in the crust. Clay and shale permeability is a crucial but often highly uncertain analysis parameter; direct measurements are challenging, error-prone, and - perhaps most importantly - provide information only at quite small scales. Fortunately, there has been a dramatic increase in clay and shale permeability data from sources that include scientific ocean drilling, nuclear waste repository research, groundwater resource studies, liquid waste and CO2 sequestration, and oil and gas research. The effect of lithology as well as porosity on matrix permeability can now be examined and permeability - scale relations are becoming discernable. A significant number of large-scale permeability estimates have been obtained by inverse methods that essentially treat large-scale flow systems as natural experiments. They suggest surprisingly little scale-dependence in clay and shale permeabilities in subsiding basins and accretionary complexes. Stable continental settings present a different picture; as depths increase beyond 1 km, scale dependence mostly disappears even over the largest areas. At depths less than 1 km, secondary permeability is not always present over areas of 1 - 10 km2, but always evident for areas in excess of about 103 km2. Transmissive fractures have been observed in very low porosity (< 0.03) shales in these settings, but the cause of scale dependence in other cases is unclear; it may reflect time-dependent, or "dynamic" conditions, including irreversible and ongoing changes imposed on subsurface flow systems by human activities.

Clay Mineralogy of AN Alluvial Aquifer in a Mountainous, Semiarid Terrain, AN Example from Rifle, Colorado

NASA Astrophysics Data System (ADS)

Elliott, W. C.; Lim, D.; Zaunbrecher, L. K.; Pickering, R. A.; Williams, K. H.; Navarre-Sitchler, A.; Long, P. E.; Noel, V.; Bargar, J.; Qafoku, N. P.

2015-12-01

Alluvial sediments deposited along the Colorado River corridor in the semi-arid regions of central to western Colorado can be important hosts for legacy contamination including U, V, As and Se. These alluvial sediments host aquifers which are thought to provide important "hot spots" and "hot moments" for microbiological activity controlling organic carbon processing and fluxes in the subsurface. Relatively little is known about the clay mineralogy of these alluvial aquifers and the parent alluvial sediments in spite of the fact that they commonly include lenses of silt-clay materials. These lenses are typically more reduced than coarser grained materials, but zones of reduced and more oxidized materials are present in these alluvial aquifer sediments. The clay mineralogy of the non-reduced parent alluvial sediments of the alluvial aquifer located in Rifle, CO (USA) is composed of chlorite, smectite, illite, kaolinite and quartz. The clay mineralogy of non-reduced fine-grained materials at Rifle are composed of the same suite of minerals found in the sediments plus a vermiculite-smectite intergrade that occurs near the bottom of the aquifer near the top of the Wasatch Formation. The clay mineral assemblages of the system reflect the mineralogically immature character of the source sediments. These assemblages are consistent with sediments and soils that formed in a moderately low rainfall climate and suggestive of minimal transport of the alluvial sediments from their source areas. Chlorite, smectite, smectite-vermiculite intergrade, and illite are the likely phases involved in the sorption of organic carbon and related microbial redox transformations of metals in these sediments. Both the occurrence and abundance of chlorite, smectite-vermiculite, illite and smectite can therefore exert an important control on the contaminant fluxes and are important determinants of biogeofacies in mountainous, semiarid terrains.

Beyond clay - using selective extractions to improve predictions of soil carbon content

NASA Astrophysics Data System (ADS)

Rasmussen, C.; Berhe, A. A.; Blankinship, J. C.; Crow, S. E.; Druhan, J. L.; Heckman, K. A.; Keiluweit, M.; Lawrence, C. R.; Marin-Spiotta, E.; Plante, A. F.; Schaedel, C.; Schimel, J.; Sierra, C. A.; Thompson, A.; Wagai, R.; Wieder, W. R.

2016-12-01

A central component of modern soil carbon (C) models is the use of clay content to scale the relative partitioning of decomposing plant material to respiration and mineral stabilized soil C. However, numerous pedon to plot scale studies indicate that other soil mineral parameters, such as Fe- or Al-oxyhydroxide content and specific surface area, may be more effective than clay alone for predicting soil C content and stabilization. Here we directly address the following question: Are there soil physicochemical parameters that represent mineral C association and soil C content that can replace or be used in conjunction with clay content as scalars in soil C models. We explored the relationship of soil C content to a number of soil physicochemical and physiographic parameters using the National Cooperative Soil Survey database that contains horizon level data for > 62,000 pedons spanning global ecoregions and geographic areas. The data indicated significant variation in the degree of correlation among soil C, clay and Fe-/Al-oxyhydroxides with increasing moisture variability. Specifically, dry, water-limited systems (PET/MAP > 1) presented strong positive correlations between clay and soil C, that decreased significantly to little or no correlation in wet, energy-limited systems (PET/MAP < 1). In contrast, the correlation of soil C to oxalate extractable Al+Fe increased significantly with increasing moisture availability. This pattern was particularly well expressed for subsurface B horizons. Multivariate analyses indicated similar patterns, with clear climate and ecosystem level variation in the degree of correlation among soil C and soil physicochemical properties. The results indicate a need to modify current soil C models to incorporate additional C partitioning parameters that better account for climate and ecoregion variability in C stabilization mechanisms.