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Sample records for demersal fish species

  1. Marine fronts are important fishing areas for demersal species at the Argentine Sea (Southwest Atlantic Ocean)

    NASA Astrophysics Data System (ADS)

    Alemany, Daniela; Acha, Eduardo M.; Iribarne, Oscar O.

    2014-03-01

    The high primary and secondary production associated with frontal systems attract a diversity of organisms due to high prey availability; this is why a strong relationship between fronts and pelagic fisheries has been shown worldwide. In the Argentine Sea, demersal resources are the most important, both in economical and in ecological sense; so we hypothesize that fronts are also preferred fishing areas for demersal resources. We evaluated the relationship between spatial distribution of fishing effort and oceanographic fronts, analyzing three of the most important frontal systems located in the Argentine Sea: the shelf-break front, the southern Patagonia front and the mid-shelf front. Individual vessel satellite monitoring system data (VMS; grouped by fleet type: ice-trawlers, freezer-trawlers and jigging fleet) were studied and fishing events were identified. Fishing events per area were used as a proxy of fishing effort and its spatial distribution by fleet type was visualized and analyzed with Geographic Information Systems. Oceanographic fronts were defined using polygons based on satellite chlorophyll amplitude values, and the percentage of fishing events within each polygon was calculated. Results showed a positive association between fronts and fishing activities of the different fleets, which suggests the aggregation of target species in these zones. The coupling of the freezer-trawler and jigging fleets (that operate on lower trophic level species; Macruronus magellanicus and Illex argentinus respectively) with fronts was higher than the ice-trawler fleet, targeting species of higher trophic level (Merluccius hubbsi). Marine fronts represent important fishing areas, even for demersal resources, as the distribution of fishing fleets and fishing effort are positively associated with frontal zones.

  2. Changes in species diversity and size composition in the Firth of Clyde demersal fish community (1927–2009)

    PubMed Central

    Heath, M. R.; Speirs, D. C.

    2012-01-01

    Following the repeal in 1962 of a long-standing ban on trawling, yields of demersal fish from the Firth of Clyde, southwest Scotland, increased to a maximum in 1973 and then declined until the directed fishery effectively ceased in the early 2000s. Since then, the only landings of demersal fish from the Firth have been by-catch in the Norway lobster fishery. We analysed changes in biomass density, species diversity and length structure of the demersal fish community between 1927 and 2009 from scientific trawl surveys, and related these to the fishery harvesting rate. As yields collapsed, the community transformed from a state in which biomass was distributed across numerous species (high species evenness) and large maximum length taxa were common, to one in which 90 per cent of the biomass was vested in one species (whiting), and both large individuals and large maximum length species were rare. Species evenness recovered quickly once the directed fishery ceased, but 10 years later, the community was still deficient in large individuals. The changes partly reflected events at a larger regional scale but were more extreme. The lag in response with respect to fishing has implications for attempts at managing a restoration of the ecosystem. PMID:21733900

  3. Fish parasites in the Arctic deep-sea: Poor diversity in pelagic fish species vs. heavy parasite load in a demersal fish

    NASA Astrophysics Data System (ADS)

    Klimpel, Sven; Palm, Harry Wilhelm; Busch, Markus Wilhelm; Kellermanns, Esra; Rückert, Sonja

    2006-07-01

    A total of 219 deep-sea fishes belonging to five families were examined for the parasite fauna and stomach contents. The demersal fish Macrourus berglax, bathypelagic Bathylagus euryops, and mesopelagic Argentina silus, Borostomias antarcticus, Chauliodus sloani, and Lampanyctus macdonaldi were caught at 243-708 m trawling depth in the Greenland and the Irminger Sea in 2002. A total of 21 different parasite species, six Digenea, one Monogenea, two Cestoda, seven Nematoda, one Acanthocephala, and four Crustacea, were found. The parasite diversity in the meso- and bathypelagic environment was less diverse in comparison to the benthal. Macrourus berglax had the highest diversity (20 species), usually carrying 4-10 different parasite species (mean 7.1), whereas Bathylagus euryops harbored up to three and Argentina silus, Borostomias antarcticus, Chauliodus sloani and Lampanyctus macdonaldi each up to two species. Most Digenea, Cestoda, Nematoda, Acanthocephala, and Crustacea are known from a wide host range. Several of the encountered parasites occurred at a very low prevalence (<10%), indicating that the studied deep-sea fishes are most probably not instrumental to complete the parasite life cycles in the area of investigation. It is suggested that the lack of nutrients in the meso- and bathypelagial limits the abundance of potential first intermediate hosts of nematodes and cestodes, resulting in low infestation rates even of widely distributed, non-specific species. In contrast, the higher biomass in the benthic deep-sea environment increases the availability of potential intermediate hosts, such as molluscs for the digeneans, resulting in increased parasite diversity. Because many deep-sea fish have a generalistic feeding behavior, the observed different parasite diversity reflects a different depth range of the fish and not necessarily a specific fish feeding ecology.

  4. Spatial and Temporal Entry Patterns of Fish Larvae into North Carolina Estuaries: Comparisons Among One Pelagic and Two Demersal Species

    NASA Astrophysics Data System (ADS)

    Joyeux, J.-C.

    1998-12-01

    A sampling programme targeting larvae of winter spawning fishes immigrating from the oceanic domain into the Pamlico-Albemarle Sounds system (NC, U.S.A.) was performed at the four major inlets of the lagoon system. Sampling yielded abundant catches of three species, a Clupeid (Atlantic menhaden,Brevoortia tyrannus) and two Sciaenids (Atlantic croaker,Micropogonias undulatusand spot,Leiostomus xanthurus). In this article, the author documents the differences in the mechanisms developed for estuarine recruitment among the three species. Abundance at the tidal inlets was dependent upon numerous factors, such as sampling month, inlet, luminosity, tide flow direction and depth. The spatial and temporal positioning of the larvae differed among the species and affected their capabilities to be transported through the inlets. More specifically, spot and croaker migrated vertically within the water column in accordance with the direction of the water flow. Sciaenids minimized the outwelling effects of ebb tides by migrating into the slowest ebbing currents, near the bottom. Menhaden did not rely on vertical migrations for estuarine transport and retention. For this species, landward transport is provided either when dusk and flood onset are coincident or through non-tidal flows developing under meteorological forcing. The Sciaenids were less, or not, dependent upon these conditions. In one inlet, the retention was dependent upon the strength of the flooding and ebbing flows. In this case, the retention of the pelagic species was lower than the retention of demersal species.

  5. Metal concentrations in demersal fish species from Santa Maria Bay, Baja California Sur, Mexico (Pacific coast).

    PubMed

    Jonathan, M P; Aurioles-Gamboa, David; Villegas, Lorena Elizabeth Campos; Bohórquez-Herrera, Jimena; Hernández-Camacho, Claudia J; Sujitha, S B

    2015-10-15

    Concentrations of 11 trace metals (Fe, Mn, Cr, Cu, Ni, Co, Pb, Zn, Cd, As, Hg) in 40 fish species from Santa Maria Bay, Baja California Sur, Mexico, the strategically important area for marine mammals and organisms were analyzed. Based on their concentrations the ranking of metals Fe>Zn>Ni>Cr>Mn>Pb>Cu>Co>As>Cd>Hg suggests that organism size, metabolism and feeding habits are correlated with metal concentrations. Local geological formations affect the concentrations of different metals in the aquatic environment and are subsequently transferred to fishes. The correlation analysis suggests that metabolism and nurturing habits impact the concentration of metals. Concentrations of Fe and Mn appear to be influenced by scavenging and absorption processes, which vary by species. The considerable variability in the metal concentrations obtained in different species underscores the importance of regular monitoring.

  6. Long-term changes in species composition of demersal fish and epibenthic species in the Jade area (German Wadden Sea/Southern North Sea) since 1972

    NASA Astrophysics Data System (ADS)

    Meyer, Julia; Kröncke, Ingrid; Bartholomä, Alexander; Dippner, Joachim W.; Schückel, Ulrike

    2016-11-01

    Within this long-term study, the short- and long-term variability of demersal fish and epibenthic species in relation to temperature and climate-driven environmental changes in the inshore tidal bay system of the Jade area was investigated. Semiquantitative sampling took place once per spring and summer period from 1972 to 2014 by using a 2 m beam trawl at one station in the Jade area (German Wadden Sea/southern North Sea). Min/max autocorrelation analysis (MAFA) and Mann-Kendall analysis revealed significant increasing trends in total abundance and species number. Homogeneity analysis revealed shifts for abundance in spring and summer in the late 1980s and for species number in the late 1980s in spring and early 2000s in summer. Abundances of the estuarine crustacean species Carcinus maenas and Liocarcinus holsatus and of the estuarine fish species Pomatoschistus spp. showed significant increasing abundances since the late 1980s. The marine juvenile species Pleuronectes platessa and Limanda limanda showed significant decreasing abundances, while abundances of Solea solea showed significant increasing abundances since the early 2000s. Abundances of L.holsatus and C. maenas showed mass occurrences since the early 2000s. Spearman correlation analysis revealed significant correlations of temperature and abundance data of some characteristic species. Statistical downscaling analysis revealed significant correlations between observations and climate indicators such as the North Sea Environmental (NSE) Index for spring. Thus, it appears that climate effects influenced the long-term variability of species number and abundance of epibenthic and demersal fish species in the Jade area, resulting in community shifts in the late 1980s and early 2000s.

  7. Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

    PubMed Central

    Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

    2012-01-01

    The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected

  8. Habitat specialization in tropical continental shelf demersal fish assemblages.

    PubMed

    Fitzpatrick, Ben M; Harvey, Euan S; Heyward, Andrew J; Twiggs, Emily J; Colquhoun, Jamie

    2012-01-01

    The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth), down the fore reef slope to the reef base (10-30 m depth) then across the adjacent continental shelf (30-110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats

  9. Seasonal variation in species composition and abundance of demersal fish and invertebrates in a Seagrass Natural Reserve on the eastern coast of the Shandong Peninsula, China

    NASA Astrophysics Data System (ADS)

    Xu, Qiang; Guo, Dong; Zhang, Peidong; Zhang, Xiumei; Li, Wentao; Wu, Zhongxin

    2016-03-01

    Seagrass habitats are structurally complex ecosystems, which support high productivity and biodiversity. In temperate systems the density of seagrass may change seasonally, and this may influence the associated fish and invertebrate community. Little is known about the role of seagrass beds as possible nursery areas for fish and invertebrates in China. To study the functioning of a seagrass habitat in northern China, demersal fish and invertebrates were collected monthly using traps, from February 2009 to January 2010. The density, leaf length and biomass of the dominant seagrass Zostera marina and water temperature were also measured. The study was conducted in a Seagrass Natural Reserve (SNR) on the eastern coast of the Shandong Peninsula, China. A total of 22 fish species and five invertebrate species were recorded over the year. The dominant fish species were Synechogobius ommaturus, Sebastes schlegelii, Pholis fangi, Pagrus major and Hexagrammos otakii and these species accounted for 87% of the total number of fish. The dominant invertebrate species were Charybdis japonica and Octopus variabilis and these accounted for 98% of the total abundance of invertebrates. There was high temporal variation in species composition and abundance. The peak number of fish species occurred in August-October 2009, while the number of individual fish and biomass was highest during November 2009. Invertebrate numbers and biomass was highest in March, April, July and September 2009. Temporal changes in species abundance of fishes and invertebrates corresponded with changes in the shoot density and leaf length of the seagrass, Zostera marina.

  10. Targeted demersal fish species exhibit variable responses to long-term protection from fishing at the Houtman Abrolhos Islands

    NASA Astrophysics Data System (ADS)

    Bornt, Katrina R.; McLean, Dianne L.; Langlois, Tim J.; Harvey, Euan S.; Bellchambers, Lynda M.; Evans, Scott N.; Newman, Stephen J.

    2015-12-01

    Natural fluctuations in the abundance and length of targeted fish are often disrupted by acute environmental changes and anthropogenic impacts, particularly fishing pressure. Long-term assessments of targeted fish populations inside and outside areas closed to fishing are often necessary to elucidate these effects, yet few of these studies extend over long time periods. We assessed trends in the abundance and length of six targeted fish species in areas open and closed to fishing on seven occasions spanning a 9-year period (2005-2010 and 2013) at the Houtman Abrolhos Islands, Western Australia. Shallow (8-12 m) and deep (22-26 m) coral-dominated reef sites were sampled across four geographically separated island groups using baited remote underwater stereo-video (stereo-BRUV). Between 2005 and 2010, populations of Lethrinus miniatus, Lethrinus nebulosus, Plectropomus leopardus, and Chrysophrys auratus became increasingly dominated by larger individuals, potentially indicative of an ageing population. Between 2010 and 2013, however, there was a significant increase in the proportion of smaller L. miniatus, L. nebulosus, and P. leopardus in both open and closed areas, reflecting increased recruitment perhaps due to changing environmental conditions associated with a marine heat wave anomaly. This recruitment pulse was not observed for the other species in this study ( Chr. auratus, Choerodon rubescens, and Glaucosoma hebraicum). Lethrinus miniatus, L. nebulosus, Chr. auratus, and P. leopardus were larger in closed areas relative to open areas; however, they were not more abundant. These complex responses to protection also varied across sampling years for certain species (e.g., P. leopardus). Monitoring changes over the long-term in areas open and closed to fishing provides a sound basis for separating environmental variability from that associated with fishing mortality, which is crucial for optimising fisheries management.

  11. Response of a temperate demersal fish community to global warming

    NASA Astrophysics Data System (ADS)

    Punzón, A.; Serrano, A.; Sánchez, F.; Velasco, F.; Preciado, I.; González-Irusta, J. M.; López-López, L.

    2016-09-01

    Changes in the distribution of the demersal fish species have been identified in north-European Atlantic waters. The consequence of these changes has been a northward shift of the distribution limits and changes in richness. In this study a notable increase in demersal fish species richness per sampling station was detected in the southern Bay of Biscay. This rise was due to an increase in frequency of occurrence and abundance of the majority of fish species in the area (53% from the total species). A fisheries relate explanation was discarded because the mismatch between the changes in the fishing effort and the augment in frequency of occurrence and abundance. On the contrary, these changes are in agreement with expected response under the increasing temperature of the sea observed over the last three decades, associated to global warming. These changes were positively correlated with an increase in temperature of intermediate waters in the study area. In addition, some of these species showed a notable western displacements of the Centre of Gravity in the study area, which would be expected if temperate water species would be favoured by an increase in water temperature. Our results are consistent with studies in the North Sea, where many of these species showing widened distribution limits towards north. The analysis of the results shows that the studied ecosystem, the Bay of Biscay is under a meridionalization process. On the other hand, only one tropicalization event (Lepidotrigla dieuzeidei), was recorded, maybe due to the conservative restrictions applied in species selection.

  12. Metallothionein, oxidative stress and trace metals in gills and liver of demersal and pelagic fish species from Kuwaits' marine area.

    PubMed

    Beg, M U; Al-Jandal, N; Al-Subiai, S; Karam, Q; Husain, S; Butt, S A; Ali, A; Al-Hasan, E; Al-Dufaileej, S; Al-Husaini, M

    2015-11-30

    Two fish species yellowfin seabream (Acanthopagrus latus) and tonguesole (Cynoglossus arel) were collected from two locations in Kuwait's territorial waters in non-reproductive periods and used as bio-indicator organism for the assessment of metals in the marine environment. Species variation in fish was observed; seabream contained high metal content and metallothionein in liver and gill tissues compared to tonguesole, especially from Kuwait Bay area. Oxidative injury was registered in the gills of both species, but in tonguesole liver was also involved. Consequently, antioxidant enzyme catalase was elevated in tonguesole enabling bottom dwelling fish to combat oxidative assault. The study provided information about the current status of metals in marine sediment and levels of metals accumulated in representative species along with oxidative damage in exposed tissues and the range of biomarker protein metallothionein and enzymes of antioxidant defence mechanism enhancing our understanding about the biological response to the existing marine environment in Kuwait.

  13. Foraging Behaviour Patterns of Four Sympatric Demersal Fishes

    NASA Astrophysics Data System (ADS)

    Labropoulou, M.; Papadopoulou-Smith, K.-N.

    1999-08-01

    The trophic relationships of four sympatric demersal fish species (Mullus barbatus, Mullus surmuletus, Pagrus pagrus and Gobius niger) which dominate the shallow coastal areas (25-30 m) of Iraklion Bay (S Aegean, NE Mediterranean) were investigated from samples collected on a monthly basis (August 1990-August 1992). Stomach content analysis revealed that all four species were carnivorous, feeding mainly on benthic invertebrates. Although these species displayed different feeding modes based on principal prey type utilization, they all consumed a considerable number of polychaetes. In order to understand any underlying patterns of predation on polychaetes, prey items were identified to the lowest possible taxonomic level. The polychaete species were further classified into groups according to their microhabitat (surface or burrowing) and feeding (feeding mode, motility and morphology) guilds. Comparisons of the feeding habits were made using the percentage contribution by number of each prey species in the diet of the predators. Similarities in the diets between the fish species were calculated and cluster analysis was used to describe interspecific variations in food selection, concerning polychaetes. The predatory preferences of each fish species were related to the microhabitat distribution of prey species in the sediment. The differential exploitation of polychaete species was a good indicator of disparate foraging behaviour among the fish species examined, since it reflects a transition from a non-selective to a specialized feeding method. The effects of predator size and morphology of feeding apparatus and the availability of polychaete species in the environment are also discussed to explain the differential exploitation of polychaetes exhibited by the fish.

  14. The importance of deep-sea vulnerable marine ecosystems for demersal fish in the Azores

    NASA Astrophysics Data System (ADS)

    Pham, Christopher K.; Vandeperre, Frederic; Menezes, Gui; Porteiro, Filipe; Isidro, Eduardo; Morato, Telmo

    2015-02-01

    Cold-water corals and sponges aggregations are important features of the deep sea, recently classified as vulnerable marine ecosystems (VMEs). VMEs increase habitat complexity, believed to act as feeding, reproductive, nursery and refuge areas for a high number of invertebrates and fish species. In the Azores archipelago (NE Atlantic), VMEs are prevalent but their ecological role has not received much attention. The objective of this study was to investigate the importance of VMEs in influencing the distribution of demersal fish in the Azores. With data collected during experimental longline surveys , we modeled the catch of six demersal fish species of commercial value (Helicolenus dactylopterus, Pagellus bogaraveo, Mora moro, Conger conger, Phycis phycis, Pontinus kuhlii) in relation to the presence of VMEs and other environmental factors using General Additive Models (GAMs). Our study demonstrated that total fish catch was higher inside VMEs but the relationship between fish and VMEs varied among fish species. Species specific models showed that catch was strongly influenced by environmental factors, mainly depth, whilst the presence of VMEs was only important for two rockfish species; juvenile and adult P. kuhlii and juvenile H. dactylopterus. Although the association between deep-sea demersal fish and VMEs may be an exception to the rule, we suggest that VMEs act as an important habitat for two commercially important species in the Azores.

  15. Brain areas in abyssal demersal fishes.

    PubMed

    Wagner, H J

    2001-06-01

    Four areas of the brain which receive primary projections from chemical senses ([1] olfactory bulb, [2] gustatory area including facial and vagal lobes), the eye ([3] optic tectum), and mechanosensory, and-hair-cell based systems i.e. the lateral line, vestibular and auditory systems ([4] trigeminal and octavolateral regions) have been studied and relative size differences used to make deductions on the sensory preferences of 35 fish species living on or near the bottom of the deep sea. Furthermore the relative volumes of the telencephalon and the corpus cerebelli were determined. Two evaluation modes were applied: (1) the relative mean of each system was calculated and species with above-average areas identified; (2) a cluster analysis established multivariate correlations among the sensory systems. The diversity of sensory brain areas in this population of fish suggests that the benthic and epibenthic environment of the abyss presents a rich sensory environment. Vision seems to be the single most important sense suggesting the presence of relevant bioluminescent stimuli. However, in combination the chemical senses, smell and taste, surpass the visual system; most prominent among them is olfaction. The trigeminal/octavolateral area indicating the role of lateral line input and possibly audition is also well represented, but only in association with other sensory modalities. A large volume telencephalon was often observed in combination with a prominent olfactory system, whereas cerebella of unusually large sizes occurred in species with above-average visual, hair-cell based, but also olfactory systems, confirming their role as multimodal sensorimotor coordination centers. In several species the predictions derived from the volumetric brain analyses were confirmed by earlier observations of stomach content and data obtained by baited cameras. PMID:11713385

  16. Survey of demersal fishes from southern Saudi Arabia, with five new records for the Red Sea.

    PubMed

    Bogorodsky, Sergey V; Alpermann, Tilman J; Mal, Ahmad O; Gabr, Mohamed H

    2014-08-18

    During a survey of demersal fishes of the southern Red Sea coast of Saudi Arabia off Jizan, 98 species were collected by trawling. Five of these represent new records for the Red Sea: Saurida longimanus, Dactyloptena gilberti, Jaydia novaeguineae, Pomadasys maculatus and Parapercis maculata. Additionally a specimen of the rare moray Gymnothorax reticularis, previously known from only three specimens, was collected. Records of two species, Parastromateus niger and Pseudorhombus arsius, that formerly were considered questionable, are confirmed by collection of new voucher specimens. Validity of Laeops sinusarabici is confirmed. This study documents parts of the diversity of the demersal fish communities on sandy areas of the southern Red Sea, but also emphasizes that a large proportion of this area has not been explored. 

  17. Biomass of deepwater demersal forage fishes in Lake Huron, 1994-2007: Implications for offshore predators

    USGS Publications Warehouse

    Roseman, E.F.; Riley, S.C.

    2009-01-01

    We estimated the biomass of deepwater demersal forage fishes (those species common in the diets of lake trout and Chinook salmon) in Lake Huron during the period 1994-2007. The estimated total lake-wide biomass of deepwater demersal fishes in 2007 was reduced by 87 percent of that observed in 1994. Alewife biomass remained near the record low observed in 2004. Biomass of young-of-the-year rainbow smelt was at a record high in 2005, but little recruitment appears to have occurred in 2006 or 2007. Record-high estimates of young-of-the-year bloater biomass were observed in 2005 and 2007, and an increase in the biomass of adult bloater in 2007 suggests that some recruitment may be occurring. The biomass of other potential deepwater demersal forage fish species (sculpins, ninespine stickleback, trout-perch and round goby) has also declined since 1994 and remained low in 2007. The forage fish community in 2007 was dominated by small (< 120 mm) bloater and rainbow smelt. These results suggest that lake trout and Chinook salmon in Lake Huron may face nutritional stress in the immediate future.

  18. Plastic ingestion by pelagic and demersal fish from the North Sea and Baltic Sea.

    PubMed

    Rummel, Christoph D; Löder, Martin G J; Fricke, Nicolai F; Lang, Thomas; Griebeler, Eva-Maria; Janke, Michael; Gerdts, Gunnar

    2016-01-15

    Plastic ingestion by marine biota has been reported for a variety of different taxa. In this study, we investigated 290 gastrointestinal tracts of demersal (cod, dab and flounder) and pelagic fish species (herring and mackerel) from the North and Baltic Sea for the occurrence of plastic ingestion. In 5.5% of all investigated fishes, plastic particles were detected, with 74% of all particles being in the microplastic (<5mm) size range. The polymer types of all found particles were analysed by means of Fourier transform infrared (FT-IR) spectroscopy. Almost 40% of the particles consisted of polyethylene (PE). In 3.4% of the demersal and 10.7% of the pelagic individuals, plastic ingestion was recorded, showing a significantly higher ingestion frequency in the pelagic feeders. The condition factor K was calculated to test differences in the fitness status between individuals with and without ingested plastic, but no direct effect was detected.

  19. Spatial and temporal variability of demersal fishes at Condor seamount (Northeast Atlantic)

    NASA Astrophysics Data System (ADS)

    Menezes, Gui M.; Giacomello, Eva

    2013-12-01

    Temporal and spatial patterns of variation of benthic and benthopelagic fish assemblages on the Condor Seamount of the Azores, Northeast Atlantic, were studied based on longline samples from the depth interval 200-1300 m depth. The seamount was used as a commercial fishing ground for decades but is currently closed to fishing as a temporary protected area for research. The protection regime offers an opportunity to monitor and analyze responses to harvesting and recovery from previous fishing impacts. Species number, catches per unit of effort, and zonation with depth corresponded in general with what was observed elsewhere for the Azorean demersal fish community. Total abundance, species richness and species composition significantly varied in time and space within the seamount, generally showing a North-South asymmetry. Abundance and species richness were higher in the Northern than in the Southern sector of the seamount, mainly due to higher abundances of the species Helicolenus dactylopterus, Pagellus bogaraveo, Beryx splendens and Trachurus picturatus. Analyses of abundance variation of the most frequent species showed an array of species-specific responses. The variability of fish assemblages is discussed in the light of oceanographic and anthropogenic factors, which may drive the observed patterns and trends.

  20. Diversity of demersal fish in the East China Sea: Implication of eutrophication and fishery

    NASA Astrophysics Data System (ADS)

    Chang, Ni-Na; Shiao, Jen-Chieh; Gong, Gwo-Ching

    2012-09-01

    The environment of the East China Sea has been greatly impacted by both fishing and land-based pollution over the past decades, with a concomitant decline of fishery resources. Imposition of a seasonal fishing moratorium and a trawling prohibition zone has failed to engender recovery of fish communities. To help understand the respective impacts of environmental factors and fishing activities in the East China Sea ecosystem, fish samples and environmental parameters were collected in prohibited and open fishing areas, during the seasonal fishing moratorium. The inshore area of the East China Sea, corresponding to the prohibited zone for trawling, had extremely high nutrient concentrations and relatively low dissolved oxygen. The diversity index of demersal fish showed significantly negative correlations with nutrient concentrations and positive correlations with bottom-water dissolved oxygen. The inshore area of the East China Sea was heavily dominated by small-sized fishes, such as Gobiids—Amblychaeturichthys hexanema and Apogonids—Apogon lineatus, reflecting low survival of most fish species. In contrast, the offshore areas, with lower nutrient concentrations and higher dissolved oxygen, had higher biodiversity. These findings suggest that eutrophication and subsequent hypoxia is responsible for the limited recovery of fishery resources in the trawling prohibition area of the East China Sea. Therefore, a multi-pronged fishery management that involves both fishing restriction and environmental improvement is urgently needed in the East China Sea.

  1. Vertical stratification in the distribution of demersal fishes along the walls of the La Jolla and Scripps submarine canyons, California, USA

    NASA Astrophysics Data System (ADS)

    Smith, Joshua G.; Lindholm, James

    2016-08-01

    The geographic distributions of many coastal marine fish assemblages are strongly driven by habitat features, particularly among demersal fishes that live along the seafloor. Ecologists have long recognized the importance of characterizing fish habitat associations, especially where spatial management is under consideration. However, little is known about fish distributions and habitat suitability in unique demersal habitats such as submarine canyons. The active continental margin of the California coast is cut by eight submarine canyons, several of which extend from the shore to the deep abyssal plain. We sampled the demersal fish assemblages in two of those canyons: (1) the Scripps submarine canyon in the San-Diego-Scripps State Marine Conservation Area (SMCA) and (2) the La Jolla canyon in the Matlahuayl State Marine Reserve (SMR) to gain insight into both the distributions and habitat associations of demersal fishes in canyons. A remotely operated vehicle was used to conduct 21 vertically oriented transects along the canyon walls in depths ranging from 20 to 300 m. Species composition was assessed in three depth-stratified zones (100 m per zone) along the canyon walls. Species richness, abundance, and attributes of the surrounding canyon habitat structure (slope and benthic terrain ruggedness) were quantified. Three distinct assemblage groupings were identified, which comprised 35 species of demersal fishes from 17 families. Among all factors analyzed in this study, depth, slope, and ruggedness were strong explanatory variables of patterns of species richness and abundance; however, the relationship between depth and assemblage structure was non-linear. The greatest number of species was observed in the mid depth-stratified zone. These trends suggest that variation in canyon dynamics across depth strata may facilitate distinct assemblage groupings of demersal fishes, which can in turn be used to better manage these unique habitats.

  2. Enzyme activities of demersal fishes from the shelf to the abyssal plain

    NASA Astrophysics Data System (ADS)

    Drazen, Jeffrey C.; Friedman, Jason R.; Condon, Nicole E.; Aus, Erica J.; Gerringer, Mackenzie E.; Keller, Aimee A.; Elizabeth Clarke, M.

    2015-06-01

    The present study examined metabolic enzyme activities of 61 species of demersal fishes (331 individuals) trawled from a 3000 m depth range. Citrate synthase, lactate dehydrogenase, malate dehydrogenase, and pyruvate kinase activities were measured as proxies for aerobic and anaerobic activity and metabolic rate. Fishes were classified according to locomotory mode, either benthic or benthopelagic. Fishes with these two locomotory modes were found to exhibit differences in metabolic enzyme activity. This was particularly clear in the overall activity of citrate synthase, which had higher activity in benthopelagic fishes. Confirming earlier, less comprehensive studies, enzyme activities declined with depth in benthopelagic fishes. For the first time, patterns in benthic species could be explored and these fishes also exhibited depth-related declines in enzyme activity, contrary to expectations of the visual interactions hypothesis. Trends were significant when using depth parameters taken from the literature as well as from the present trawl information, suggesting a robust pattern regardless of the depth metric used. Potential explanations for the depth trends are discussed, but clearly metabolic rate does not vary simply as a function of mass and habitat temperature in fishes as shown by the substantial depth-related changes in enzymatic activities.

  3. Autonomous video camera system for monitoring impacts to benthic habitats from demersal fishing gear, including longlines

    NASA Astrophysics Data System (ADS)

    Kilpatrick, Robert; Ewing, Graeme; Lamb, Tim; Welsford, Dirk; Constable, Andrew

    2011-04-01

    Studies of the interactions of demersal fishing gear with the benthic environment are needed in order to manage conservation of benthic habitats. There has been limited direct assessment of these interactions through deployment of cameras on commercial fishing gear especially on demersal longlines. A compact, autonomous deep-sea video system was designed and constructed by the Australian Antarctic Division (AAD) for deployment on commercial fishing gear to observe interactions with benthos in the Southern Ocean finfish fisheries (targeting toothfish, Dissostichus spp). The Benthic Impacts Camera System (BICS) is capable of withstanding depths to 2500 m, has been successfully fitted to both longline and demersal trawl fishing gear, and is suitable for routine deployment by non-experts such as fisheries observers or crew. The system is entirely autonomous, robust, compact, easy to operate, and has minimal effect on the performance of the fishing gear it is attached to. To date, the system has successfully captured footage that demonstrates the interactions between demersal fishing gear and the benthos during routine commercial operations. It provides the first footage demonstrating the nature of the interaction between demersal longlines and benthic habitats in the Southern Ocean, as well as showing potential as a tool for rapidly assessing habitat types and presence of mobile biota such as krill ( Euphausia superba).

  4. Environmental assessment of Buccaneer gas and oil field in the northwestern Gulf of Mexico, 1978-1979. Volume III. Effects of gas and oil field structures and effluents on pelagic and reef fishes, demersal fishes and macrocrustaceans. Annual report

    SciTech Connect

    Gallaway, B.J.; Martin, L.R.

    1980-12-01

    Demersal nekton communities in the Buccaneer Oil Field during research year 1978-79 were dominated by macrocrustaceans, particularly sugar shrimp, Trachypenaeus similis. The most abundant fish was the shoal flounder, Syacium gunteri. The effects of substrate and platform type on seasonal and areal distributional patterns are provided for dominate, demersal species. Several important species, including sugar shrimp, were indicated more abundant at production platforms than at control structures having the same bottom type.

  5. Meiofauna as food source for small-sized demersal fish in the southern North Sea

    NASA Astrophysics Data System (ADS)

    Schückel, Sabine; Sell, Anne F.; Kihara, Terue C.; Koeppen, Annemarie; Kröncke, Ingrid; Reiss, Henning

    2013-06-01

    Meiofauna play an essential role in the diet of small and juvenile fish. However, it is less well documented which meiofaunal prey groups in the sediment are eaten by fish. Trophic relationships between five demersal fish species (solenette, goby, scaldfish, dab <20 cm and plaice <20 cm) and meiofaunal prey were investigated by means of comparing sediment samples and fish stomach contents collected seasonally between January 2009 and January 2010 in the German Bight. In all seasons, meiofauna in the sediment was numerically dominated by nematodes, whereas harpacticoids dominated in terms of occurrence and biomass. Between autumn and spring, the harpacticoid community was characterized by Pseudobradya minor and Halectinosoma canaliculatum, and in summer by Longipedia coronata. Meiofaunal prey dominated the diets of solenette and gobies in all seasons, occurred only seasonally in the diet of scaldfish and dab, and was completely absent in the diet of plaice. For all fish species (excluding plaice) and in each season, harpacticoids were the most important meiofauna prey group in terms of occurrence, abundance and biomass. High values of Ivlev's index of selectivity for Pseudobradya spp. in winter and Longipedia spp. in summer provided evidence that predation on harpacticoids was species-selective, even though both harpacticoids co-occurred in high densities in the sediments. Most surficial feeding strategies of the studied fish species and emergent behaviours of Pseudobradya spp. and Longipedia spp. might have caused this prey selection. With increasing fish sizes, harpacticoid prey densities decreased in the fish stomachs, indicating a diet change towards larger benthic prey during the ontogeny of all fish species investigated.

  6. Impact on demersal fish of a large-scale and deep sand extraction site with ecosystem-based landscaped sandbars

    NASA Astrophysics Data System (ADS)

    de Jong, Maarten F.; Baptist, Martin J.; van Hal, Ralf; de Boois, Ingeborg J.; Lindeboom, Han J.; Hoekstra, Piet

    2014-06-01

    For the seaward harbour extension of the Port of Rotterdam in the Netherlands, approximately 220 million m3 sand was extracted between 2009 and 2013. In order to decrease the surface area of direct impact, the authorities permitted deep sand extraction, down to 20 m below the seabed. Biological and physical impacts of large-scale and deep sand extraction are still being investigated and largely unknown. For this reason, we investigated the colonization of demersal fish in a deep sand extraction site. Two sandbars were artificially created by selective dredging, copying naturally occurring meso-scale bedforms to increase habitat heterogeneity and increasing post-dredging benthic and demersal fish species richness and biomass. Significant differences in demersal fish species assemblages in the sand extraction site were associated with variables such as water depth, median grain size, fraction of very fine sand, biomass of white furrow shell (Abra alba) and time after the cessation of sand extraction. Large quantities of undigested crushed white furrow shell fragments were found in all stomachs and intestines of plaice (Pleuronectes platessa), indicating that it is an important prey item. One and two years after cessation, a significant 20-fold increase in demersal fish biomass was observed in deep parts of the extraction site. In the troughs of a landscaped sandbar however, a significant drop in biomass down to reference levels and a significant change in species assemblage was observed two years after cessation. The fish assemblage at the crests of the sandbars differed significantly from the troughs with tub gurnard (Chelidonichthys lucerna) being a Dufrêne-Legendre indicator species of the crests. This is a first indication of the applicability of landscaping techniques to induce heterogeneity of the seabed although it remains difficult to draw a strong conclusion due the lack of replication in the experiment. A new ecological equilibrium is not reached after 2

  7. Ingestion of microplastics by demersal fish from the Spanish Atlantic and Mediterranean coasts.

    PubMed

    Bellas, Juan; Martínez-Armental, José; Martínez-Cámara, Ariana; Besada, Victoria; Martínez-Gómez, Concepción

    2016-08-15

    Microplastic pollution has received increased attention over the last few years. This study documents microplastic ingestion in three commercially relevant demersal fish species from the Spanish Atlantic and Mediterranean coasts, the lesser spotted dogfish Scyliorhinus canicula, the European hake Merluccius merluccius and the red mullet Mullus barbatus. Overall 212 fish were examined, 72 dogfish, 12 hakes and 128 red mullets. The percentage of fish with microplastics was 17.5% (15.3% dogfish, 18.8% red mullets and 16.7% hakes), averaging 1.56±0.5 items per fish, and the size of the microplastics ranged from 0.38 to 3.1mm. These fish species are used currently as biomonitors for marine pollution monitoring within the Spanish Marine Pollution Monitoring Programme (SMP), and may be as well suitable candidates for monitoring spatial and temporal trends of ingested litter. The data presented here represent a baseline for the implementation of the Marine Strategy Framework Directive descriptor 10 in Spain. PMID:27289284

  8. Ingestion of microplastics by demersal fish from the Spanish Atlantic and Mediterranean coasts.

    PubMed

    Bellas, Juan; Martínez-Armental, José; Martínez-Cámara, Ariana; Besada, Victoria; Martínez-Gómez, Concepción

    2016-08-15

    Microplastic pollution has received increased attention over the last few years. This study documents microplastic ingestion in three commercially relevant demersal fish species from the Spanish Atlantic and Mediterranean coasts, the lesser spotted dogfish Scyliorhinus canicula, the European hake Merluccius merluccius and the red mullet Mullus barbatus. Overall 212 fish were examined, 72 dogfish, 12 hakes and 128 red mullets. The percentage of fish with microplastics was 17.5% (15.3% dogfish, 18.8% red mullets and 16.7% hakes), averaging 1.56±0.5 items per fish, and the size of the microplastics ranged from 0.38 to 3.1mm. These fish species are used currently as biomonitors for marine pollution monitoring within the Spanish Marine Pollution Monitoring Programme (SMP), and may be as well suitable candidates for monitoring spatial and temporal trends of ingested litter. The data presented here represent a baseline for the implementation of the Marine Strategy Framework Directive descriptor 10 in Spain.

  9. A continuum of life histories in deep-sea demersal fishes

    NASA Astrophysics Data System (ADS)

    Drazen, Jeffrey C.; Haedrich, Richard L.

    2012-03-01

    It is generally perceived that all deep-sea fishes have great longevity, slow growth, and low reproductive output in comparison to shelf dwelling species. However, such a dichotomy is too simplistic because some fishes living on continental slopes are relatively fecund and fast growing, important considerations in respect to the management of expanding deep-sea fisheries. We tested two hypotheses that might explain variation in life history attributes of commercially exploited demersal fishes: (1) phylogeny best explains the differences because deep-sea species are often in different families from shelf dwelling ones and, alternatively, (2) environmental factors affecting individual life history attributes that change with depth account for the observed variation. Our analysis was based on 40 species from 9 orders, including all major commercially exploited deep-sea fishes and several phylogenetically related shelf species. Depth of occurrence correlated significantly with age at 50% maturity increasing linearly with depth (r2=0.46), while the von Bertalanffy growth coefficient, maximum fecundity and potential rate of population increase declined significantly and exponentially with depth (r2=0.41, 0.25 and 0.53, respectively). These trends were still significant when phylogenetically independent contrasts were applied. The trends were also consistent with similar slopes amongst members of the order Gadiformes and the order Scorpaeniformes. Reduced temperatures, predation pressure, food availability, or metabolic rates may all contribute to such changes with depth. Regardless of the mechanisms, by analyzing a suite of fishes from the shelves to the slope the present analysis has shown that rather than a simple dichotomy between deep-sea fishes and shelf fishes there is a continuum of life history attributes in fishes which correlate strongly with depth of occurrence.

  10. Community structure and seasonal variation of an inshore demersal fish community at Goa, West Coast of India

    NASA Astrophysics Data System (ADS)

    Ansari, Z. A.; Chatterji, A.; Ingole, B. S.; Sreepada, R. A.; Rivonkar, C. U.; Parulekar, A. H.

    1995-11-01

    Structure and seasonal variation of an inshore demersal fish assemblage have been described from 52 trawl samples collected between November 1988-November 1989 from Aguada and Marmugao Bays at Goa (west coast of India). A total of 12 519 individuals belonging to 59 species were collected. There was a clear seasonal fluctuation in relative abundance, biomass, species occurrence and species dominance. Families such as Sciaenidae, Leiognathidae, Cynoglossidae, Clupeidae and Ariidae dominated the demersal fish community, both in abundance and in biomass over the two areas. About 50% of the recorded species regularly occurred in the two areas. Density and biomass were high during post- and pre-monsoon seasons and low during the monsoon seasons. The species assemblages at the two sites were similar and showed much overlap of dominant species. Resident and quasi-resident species were dominant throughout the year and the overall population consisted mainly of marine coastal species. Cluster analysis showed species segregation into seasonal groups and intense association among different species groups. There was seasonal fluctuation in diversity indices and a marginal increase in species richness in Aguada bay was noticed. The dominance of juveniles in the catches indicate that the two areas serve as nursery grounds for the juveniles of several commercially important marine teleosts.

  11. Effects of trawling on the diets of common demersal fish by-catch of a tropical prawn trawl fishery.

    PubMed

    Dell, Q; Griffiths, S P; Tonks, M L; Rochester, W A; Miller, M J; Duggan, M A; van der Velde, T D; Pillans, R D; Coman, G J; Bustamante, R H; Milton, D A

    2013-03-01

    The ecological effect of prawn trawling on the benthos of the Gulf of Carpentaria, northern Australia, was investigated by examining stomach contents of common demersal fishes incidentally caught as by-catch in the fishery. Fishes were collected from high and low fishing intensity sites in three regions based on vessel monitoring system data. The diets of eight species of benthic fish predators were compared between regions and fishing intensities. A regional effect on diet was evident for seven species. Only one generalist species had no significant difference in diet among the three regions. For the comparisons within each region, five predator species had significantly different diet between high and low fishing intensities in at least one region. Across the three regions, high fishing intensity sites had predators that consumed a greater biomass of crustaceans, molluscs and echinoderms. At low fishing intensity sites, predators had diets comprising a greater biomass of cnidarians and teleosts, and a different assemblage of molluscs, crustaceans and fishes. These changes in diet suggest that there may have been a shift in the structure of the benthic community following intensive fishing. Analysis of predator diets is a useful tool to help identify changes in the benthic community composition after exposure to fishing. This study also provided valuable diet information on a range of abundant generalist benthic predators to improve the ecosystem modelling tools needed to support ecosystem-based fisheries management.

  12. Demersal fish assemblages off the Seine and Sedlo seamounts (northeast Atlantic)

    NASA Astrophysics Data System (ADS)

    Menezes, Gui M.; Rosa, Alexandra; Melo, Octávio; Pinho, Mário R.

    2009-12-01

    Seamounts are thought to support special biological communities, and often maintain high standing stocks of demersal and benthopelagic fishes. Seamount fish fauna have been described in several studies but few works have included species taken below 600 m. The demersal fish assemblages of the Seine and Sedlo seamounts (northeast Atlantic) from the summits to 2000 m depth were investigated based on longline survey catch data, conducted as part of the OASIS project. A total of 41 fish species from 24 families were caught at Seine near Madeira, and 30 species from 19 families were caught at Sedlo north of the Azores. Both fish faunas have high affinities with the neighbouring areas of the Azores, Madeira and with the eastern North Atlantic and the Mediterranean Sea. Overall abundances and mean body weights were slightly higher at Sedlo seamount, appearing in conformity with the latitudinal effect of increasing species abundance and productivity from south to north. The differential influence of the Mediterranean Water at each seamount may contribute to explain (a) the differences found in vertical distribution of common species, which tend to distribute deeper at Seine, and (b) the observed changes in the species composition and dominance in deeper waters. Multivariate analysis revealed a vertical structure that is approximately coincident with the expected zonation of water masses at each seamount. Physiological tolerance to the prevailing vertical hydrological conditions may explain the species distribution and the large-scale vertical assemblage structure found. However, further ecological factors like productivity patterns affecting the amount and quality of the available food appear to shape the abundance, diversity or dominance patterns of functional groups within those main assemblages. At Seine, the species Trachurus picturatus dominated the catches, mainly at the shallower edge of the plateau, appearing consistent with the sound-scattering layer interception

  13. Demersal fishes associated with Lophelia pertusa coral and hard-substrate biotopes on the continental slope, northern Gulf of Mexico

    USGS Publications Warehouse

    Sulak, Kenneth J.; Allen, Brooks R.; Luke, Kirsten E.; Norem, April D.; Randall, Michael; Quaid, Andrew J.; Yeargin, George E.; Miller, Jana M.; Harden, William M.; Caruso, John H.; Ross, Steve W.

    2007-01-01

    The demersal fish fauna of Lophelia pertusa (Linnaeus, 1758) coral reefs and associated hard-bottom biotopes was investigated at two depth horizons in the northern Gulf of Mexico using a manned submersible and remote sampling. The Viosca Knoll fauna consisted of at least 53 demersal fish species, 37 of which were documented by submersible video. On the 325 m horizon, dominant taxa determined from frame-by-frame video analysis included Stromateidae, Serranidae, Trachichthyidae, Congridae, Scorpaenidae, and Gadiformes. On the 500 m horizon, large mobile visual macrocarnivores of families Stromateidae and Serranidae dropped out, while a zeiform microcarnivore assumed importance on reef "Thicket" biotope, and the open-slope taxa Macrouridae and Squalidae gained in importance. The most consistent faunal groups at both depths included sit-and-wait and hover-and-wait strategists (Scorpaenidae, Congridae, Trachichthyidae), along with generalized mesocarnivores (Gadiformes). The specialized microcarnivore, Grammicolepis brachiusculus Poey, 1873, appears to be highly associated with Lophelia reefs. The coral "Thicket" biotope was extensively developed on the 500 m site, but fish abundance was low with only 95 fish per hectare. In contrast to Lophelia reefs from the eastern the North Atlantic, the coral "Rubble" biotope was essentially absent. This study represents the first quantitative analysis of fishes associated with Lophelia reefs in the Gulf of Mexico, and generally in the western North Atlantic.

  14. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, Northeast Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2013-01-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent abyssal plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the onset of the commercial deep-water fishery in the late 1970s and the onset of the regulation of the fishery in the early 2000's, which allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, as well as changes in the biomass (kg km-2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. C. guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 5 out of the 8 dominant species occupying depth ranges both within and outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fishery impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  15. Demersal Fish Assemblages on Seamounts and Other Rugged Features in Deep Waters of the Greater and Lesser Antilles

    NASA Astrophysics Data System (ADS)

    Chaytor, J. D.; Quattrini, A.; Demopoulos, A. W.

    2015-12-01

    Caribbean fish communities in shallow waters have been well studied along the Greater and Lesser Antilles for decades; however, the deep (>200 m) assemblages remain poorly known due to the technical challenges associated with focused surveys at these greater depths. The numerous geological features (e.g., seamounts, island ridges, banks) that punctuate the insular margins increase habitat heterogeneity, which may lead to enhanced diversity of the deep demersal fish community in the region. Recent (2013-2014) expeditions in the area using the E/V Nautilus and the ROV Hercules surveyed fish communities during 17 dives across different seafloor features at depths ranging from 64 to 2944 m. These surveys enabled us to investigate whether demersal fish assemblages differed among these seafloor features and/or in response to other environmental factors. Preliminary analyses suggested that assemblage differences are influenced by depth, dissolved oxygen, and differences in benthic microhabitat (i.e., soft substrate, rock outcrop, slope angle). Notably, both abundance and diversity of fishes was low at depths >700 m on seamounts in the Anegada Passage. This pattern is likely due to limited food supply in the region. ROV surveys further elucidated the biogeography of numerous species, as several range and depth extensions were documented. For instance, the morid Lepidion sp., previously known only from the eastern Atlantic and the western North Atlantic, was documented on Norrôit Seamount. A new species, Polylepion sp. A, known only from Curacao, was documented on Conrad Seamount. Also, many common, mesophotic reef species were observed deeper than previously known, including the butterflyfishes Chaetodon sedentarius and Prognathodes aculeatus. This study further supports the importance of environmental conditions influencing local-scale distribution of deep-sea fishes, while demonstrating how little is still known about the biogeography of numerous deep-sea and mesophotic

  16. Spatial and seasonal variations in the trophic spectrum of demersal fish assemblages in Jiaozhou Bay, China

    NASA Astrophysics Data System (ADS)

    Han, Dongyan; Xue, Ying; Ren, Yiping; Ma, Qiuyun

    2015-07-01

    Trophic structure of fish communities is fundamental for ecosystem-based fisheries management, and trophic spectrum classifies fishes by their positions in food web, which provides a simple summary on the trophic structure and ecosystem function. In this study, both fish biomass and abundance trophic spectra were constructed to study the spatial and seasonal variations in the trophic structure of demersal fish assemblages in Jiaozhou Bay, China. Data were collected from four seasonal bottom trawl surveys in Jiaozhou Bay from February to November in 2011. Trophic levels (TLs) of fishes were determined by nitrogen stable isotope analysis. This study indicated that most of these trophic spectra had a single peak at trophic level (TL) of 3.4-3.7, suggesting that demersal fish assemblages of Jiaozhou Bay were dominated by secondary consumers (eg. Pholis fangi and Amblychaeturichthys hexanema). The spatial and seasonal variations of trophic spectra of Jiaozhou Bay reflected the influence of fish reproduction, fishing pressure and migration of fishes. Two-way analysis of variance (ANOVA) showed that seasonal variations in trophic spectra in Jiaozhou Bay were significant ( P<0.05), but variations among different areas were not significant ( P>0.05). The trophic spectrum has been proved to be a useful tool to monitor the trophic structure of fish assemblages. This study highlighted the comprehensive application of fish biomass and abundance trophic spectra in the study on trophic structure of fish assemblages.

  17. Recovery of a Temperate Reef Assemblage in a Marine Protected Area following the Exclusion of Towed Demersal Fishing

    PubMed Central

    Sheehan, Emma V.; Stevens, Timothy F.; Gall, Sarah C.; Cousens, Sophie L.; Attrill, Martin J.

    2013-01-01

    Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets. The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km2 of sensitive reef habitat using a Statutory Instrument since July 2008. To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as ‘the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls’. Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus). While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries. PMID:24391841

  18. Recovery of a temperate reef assemblage in a marine protected area following the exclusion of towed demersal fishing.

    PubMed

    Sheehan, Emma V; Stevens, Timothy F; Gall, Sarah C; Cousens, Sophie L; Attrill, Martin J

    2013-01-01

    Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets. The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km(2) of sensitive reef habitat using a Statutory Instrument since July 2008. To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as 'the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls'. Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus). While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries.

  19. Recovery of a temperate reef assemblage in a marine protected area following the exclusion of towed demersal fishing.

    PubMed

    Sheehan, Emma V; Stevens, Timothy F; Gall, Sarah C; Cousens, Sophie L; Attrill, Martin J

    2013-01-01

    Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets. The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km(2) of sensitive reef habitat using a Statutory Instrument since July 2008. To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as 'the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls'. Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus). While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries. PMID:24391841

  20. Depth related trends in proximate composition of demersal fishes in the eastern North Pacific

    NASA Astrophysics Data System (ADS)

    Drazen, J. C.

    2007-02-01

    The proximate chemistry of the white muscle and liver of 18 species of demersal fish from the eastern North Pacific was studied to determine trends with depth, locomotory mode and buoyancy mechanism, foraging strategy and to elucidate energetic strategies. Data for 24 species from shallow water were taken from the literature and included for analysis of muscle water content. Benthopelagic species, primarily gadiforms, have significantly larger lipid-rich livers than benthic species. The benthopelagic species may use this lipid to add buoyancy, but it is also used as energy storage. Buoyancy mechanism was directly related to proximate composition. Fishes using gasbladders had normal muscle composition. The two species of benthopelagic fishes without gasbladders have either very high muscle lipid content ( Anoplopoma fimbria) or gelatinous muscle ( Alepocephalus tenobrosus) to aid in achieving neutral buoyancy. The macrourid, Albatrossia pectoralis, has a very small gasbladder and also has gelatinous muscle. Both of these benthopelagic fishes with gelatinous muscle feed on pelagic organisms. Gelatinous muscle was also found in two flatfishes that inhabit the oxygen minimum zone. For these fishes, high water content may serve to lower metabolic costs while maintaining large body size. Scavengers such as Coryphaenoides armatus and Coryphaenoides acrolepis have lipid rich livers and others such as A. fimbria and Pachycara sp. have high and variable muscle lipid content. Thus foraging mode also acts to influence proximate composition. Several depth-related trends in proximate composition were found. White muscle water content increased significantly with depth, and all four gelatinous species occurred at bathyal depths. This adds evidence in support of the hypothesis that decreasing light levels shorten reactive distances and relax the selective pressure for high locomotory capacity. In addition significant declines in liver protein content were observed, suggesting that

  1. Cold-water coral mounds and sponge-beds as habitats for demersal fish on the Norwegian shelf

    NASA Astrophysics Data System (ADS)

    Kutti, Tina; Bergstad, Odd Aksel; Fosså, Jan Helge; Helle, Kristin

    2014-01-01

    The importance of cold-water coral (CWC) mounds and sponge-beds as habitat for demersal fish was examined in the Træna Deep marine protected area and adjacent areas of the Norwegian continental shelf. Standardised longline fishing was conducted twice, in June and March, and predetermined fishing effort was allocated to multiple plots with varying densities of small CWC mounds and sponges, plus control plots with neither of these habitats. Catches within all examined habitats were dominated by the commercially exploited Brosme brosme (representing >70% of the total catch) followed by Galeus melastomus, Chimaera monstrosa, Etmopterus spinax and the commercially exploited Molva molva. Positive correlations were found between catch rates of B. brosme, G. melastomus and C. monstrosa and the density of small CWC mounds at one or both sampling occasions. No correlations were found between the catch rates of the same three species and sponge density; thus the sponge-beds did not seem to represent an ecologically equivalent habitat to the CWCs. On a local scale the CWC habitat appeared to attract higher abundances of B. brosme, G. melastomus and C. monstrosa; however, the differences in catch rates between coral and non-coral areas were quite low (2-4 times) and for most species the fish-habitat relationships varied temporarily and with the spatial scale used to delineate the habitat. Based on the methods and the results of this study and the fact that CWCs only occupy a very small proportion of the Norwegian shelf, the importance of CWCs as habitat for the populations of the demersal fish species examined is judged as marginal.

  2. Patterns of distribution of deepwater demersal fishes of the North Atlantic mid-ocean ridge, continental slopes, islands and seamounts

    NASA Astrophysics Data System (ADS)

    Bergstad, Odd Aksel; Menezes, Gui M. M.; Høines, Åge S.; Gordon, John D. M.; Galbraith, John K.

    2012-03-01

    Basin-scale spatial and depth-related distribution patterns of deepwater demersal fishes were analysed using bottom trawl datasets from the North Atlantic continental margin, slopes of oceanic islands and seamounts, and the mid-Atlantic Ridge. Depth-stratified presence-absence data for 593 species were compiled from fisheries-independent trawl studies with full species lists. The datasets comprised trawls conducted on the upper continental slope (200 m) to abyssal depths, and 750 m wide depth strata were used. Number of species and families declined with depth in all areas. Species number was highest in the western North Atlantic, significantly lower on the mid-Atlantic Ridge and eastern North Atlantic. Observed species numbers are also low in southern areas (Bahamas, NW Africa, southerly seamounts), but the sampling effort in these waters has been much less than in northern sites. Fish assemblages vary by depth, latitude and longitude, and the study corroborates earlier suggestions that assemblages are broadly distributed in relation to regional circulation and watermass features. The mid-Atlantic Ridge assemblages between Iceland and the Azores are most similar to those on eastern North Atlantic slopes and rises, rather dissimilar to all others, including western Atlantic, Greenland, northwest Africa and Azorean seamount and island assemblages. Across the North Atlantic differences between subareas are strongest at slope depths, much less pronounced at the less speciose rise and abyssal depths. Demersal fish biomass estimates suggest that the American slope (New England) has low biomass compared with Newfoundland and European areas, and that the supposedly oligotrophic mid-Atlantic Ridge has a level of biomass similar to or higher than the European margin.

  3. Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem

    NASA Astrophysics Data System (ADS)

    Malek, Anna J.; Collie, Jeremy S.; Gartland, James

    2014-06-01

    The abundance, biomass, diversity, and species composition of the demersal fish and invertebrate community in Rhode Island Sound and Block Island Sound, an area identified for offshore renewable energy development, were evaluated for spatial and seasonal structure. We conducted 58 otter trawls and 51 beam trawls in the spring, summer and fall of 2009-2012, and incorporated additional data from 88 otter trawls conducted by the Northeast Area Monitoring and Assessment Program. We used regionally-grouped abundance, biomass, diversity, and size spectra to assess spatial patterns in the aggregate fish community, and hierarchical cluster analysis to evaluate trends in species assemblages. Our analyses revealed coherent gradients in fish community biomass, diversity and species composition extending from inshore to offshore waters, as well as patterns related to the differing bathymetry of Rhode Island and Block Island Sounds. The fish communities around Block Island and Cox's Ledge are particularly diverse, suggesting that the proximity of hard bottom habitat may be important in structuring fish communities in this area. Species assemblages in Rhode Island and Block Island Sounds are characterized by a combination of piscivores (silver hake, summer flounder, spiny dogfish), benthivores (American lobster, black sea bass, Leucoraja spp. skates, scup) and planktivores (sea scallop), and exhibit geographic patterns that are persistent from year to year, yet variable by season. Such distributions reflect the cross-shelf migration of fish and invertebrate species in the spring and fall, highlighting the importance of considering seasonal fish behavior when planning construction schedules for offshore development projects. The fine spatial scale (10 s of kms) of this research makes it especially valuable for local marine spatial planning efforts by identifying local-scale patterns in fish community structure that will enable future assessment of the ecological impacts of

  4. Demersal fish assemblages and spatial diversity patterns in the Arctic-Atlantic transition zone in the Barents Sea.

    PubMed

    Johannesen, Edda; Høines, Åge S; Dolgov, Andrey V; Fossheim, Maria

    2012-01-01

    Direct and indirect effects of global warming are expected to be pronounced and fast in the Arctic, impacting terrestrial, freshwater and marine ecosystems. The Barents Sea is a high latitude shelf Sea and a boundary area between arctic and boreal faunas. These faunas are likely to respond differently to changes in climate. In addition, the Barents Sea is highly impacted by fisheries and other human activities. This strong human presence places great demands on scientific investigation and advisory capacity. In order to identify basic community structures against which future climate related or other human induced changes could be evaluated, we analyzed species composition and diversity of demersal fish in the Barents Sea. We found six main assemblages that were separated along depth and temperature gradients. There are indications that climate driven changes have already taken place, since boreal species were found in large parts of the Barents Sea shelf, including also the northern Arctic area. When modelling diversity as a function of depth and temperature, we found that two of the assemblages in the eastern Barents Sea showed lower diversity than expected from their depth and temperature. This is probably caused by low habitat complexity and the distance to the pool of boreal species in the western Barents Sea. In contrast coastal assemblages in south western Barents Sea and along Novaya Zemlya archipelago in the Eastern Barents Sea can be described as diversity "hotspots"; the South-western area had high density of species, abundance and biomass, and here some species have their northern distribution limit, whereas the Novaya Zemlya area has unique fauna of Arctic, coastal demersal fish. (see Information S1 for abstract in Russian).

  5. Demersal Fish Assemblages and Spatial Diversity Patterns in the Arctic-Atlantic Transition Zone in the Barents Sea

    PubMed Central

    Johannesen, Edda; Høines, Åge S.; Dolgov, Andrey V.; Fossheim, Maria

    2012-01-01

    Direct and indirect effects of global warming are expected to be pronounced and fast in the Arctic, impacting terrestrial, freshwater and marine ecosystems. The Barents Sea is a high latitude shelf Sea and a boundary area between arctic and boreal faunas. These faunas are likely to respond differently to changes in climate. In addition, the Barents Sea is highly impacted by fisheries and other human activities. This strong human presence places great demands on scientific investigation and advisory capacity. In order to identify basic community structures against which future climate related or other human induced changes could be evaluated, we analyzed species composition and diversity of demersal fish in the Barents Sea. We found six main assemblages that were separated along depth and temperature gradients. There are indications that climate driven changes have already taken place, since boreal species were found in large parts of the Barents Sea shelf, including also the northern Arctic area. When modelling diversity as a function of depth and temperature, we found that two of the assemblages in the eastern Barents Sea showed lower diversity than expected from their depth and temperature. This is probably caused by low habitat complexity and the distance to the pool of boreal species in the western Barents Sea. In contrast coastal assemblages in south western Barents Sea and along Novaya Zemlya archipelago in the Eastern Barents Sea can be described as diversity “hotspots”; the South-western area had high density of species, abundance and biomass, and here some species have their northern distribution limit, whereas the Novaya Zemlya area has unique fauna of Arctic, coastal demersal fish. (see Information S1 for abstract in Russian). PMID:22545093

  6. Carbon and nitrogen stable isotopic inventory of the most abundant demersal fish captured by benthic gears in southwestern Iceland (North Atlantic)

    NASA Astrophysics Data System (ADS)

    Sarà, Gianluca; de Pirro, Maurizio; Sprovieri, Mario; Rumolo, Paola; Halldórsson, Halldór Pálmar; Svavarsson, Jörundur

    2009-12-01

    Stable isotopes (δ13C and δ15N) were used to examine the origin of organic matter for the most representative demersal species of the SW Icelandic fishery, accounting for over 70% of landings of those species in the North Atlantic. Samples were collected during a 2-week period in early September 2004 from landings and directly during fishing cruises. Stable isotopes showed that particulate organic matter and sedimentary organic matter were at the base of the food web and appeared to fill two different compartments: the pelagic and the benthic. The pelagic realm was composed of only capelin and sandeel; krill and redfish occupied an intermediate position between pelagic and benthic realms; while anglerfish, haddock, cod and ling resulted as the true demersal species while tusk, rays and plaice were strongly linked to the benthic habitat.

  7. Consideration on the Long Ecological Half-Life Component of (137)Cs in Demersal Fish Based on Field Observation Results Obtained after the Fukushima Accident.

    PubMed

    Tagami, Keiko; Uchida, Shigeo

    2016-02-16

    Radiocesium concentrations in most marine fish collected off the coast of Fukushima and surrounding prefectures have decreased with time, and four years after the Fukushima Daiichi Nuclear Power Plant accident occurred, radiocesium concentrations have generally fallen below the detectable level (ca. < 10 Bq kg(-1)-raw). Only in some demersal fish species have detectable concentration levels still been found, and even these species have showed slow radiocesium decreases. The food web was considered as the major factor causing this phenomenon; however, slow elimination rates of radiocesium from these fish species also could be the cause. The latter effect was examined by considering that the (137)Cs concentration decreasing trend in fish could be fit with a set of three exponentially decreasing components; that is, having short, intermediate, and long biological half-lives. The long ecological half-life component was calculated using a 400-1500 d period of monitoring results for Japanese rockfish (Sebastes cheni) and compared with previous reported laboratory results for biological half-life. The obtained ecological half-lives ranged from 274-365 d, and these values agreed with the biological half-life of this fish species. This result implied that the long biological half-lives of radiocesium in some demersal fish species made their radiocesium contamination periods longer.

  8. Consideration on the Long Ecological Half-Life Component of (137)Cs in Demersal Fish Based on Field Observation Results Obtained after the Fukushima Accident.

    PubMed

    Tagami, Keiko; Uchida, Shigeo

    2016-02-16

    Radiocesium concentrations in most marine fish collected off the coast of Fukushima and surrounding prefectures have decreased with time, and four years after the Fukushima Daiichi Nuclear Power Plant accident occurred, radiocesium concentrations have generally fallen below the detectable level (ca. < 10 Bq kg(-1)-raw). Only in some demersal fish species have detectable concentration levels still been found, and even these species have showed slow radiocesium decreases. The food web was considered as the major factor causing this phenomenon; however, slow elimination rates of radiocesium from these fish species also could be the cause. The latter effect was examined by considering that the (137)Cs concentration decreasing trend in fish could be fit with a set of three exponentially decreasing components; that is, having short, intermediate, and long biological half-lives. The long ecological half-life component was calculated using a 400-1500 d period of monitoring results for Japanese rockfish (Sebastes cheni) and compared with previous reported laboratory results for biological half-life. The obtained ecological half-lives ranged from 274-365 d, and these values agreed with the biological half-life of this fish species. This result implied that the long biological half-lives of radiocesium in some demersal fish species made their radiocesium contamination periods longer. PMID:26828695

  9. Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Granger, Victoria; Fromentin, Jean-Marc; Bez, Nicolas; Relini, Giulio; Meynard, Christine N.; Gaertner, Jean-Claude; Maiorano, Porzia; Garcia Ruiz, Cristina; Follesa, Cristina; Gristina, Michele; Peristeraki, Panagiota; Brind'Amour, Anik; Carbonara, Pierluigi; Charilaou, Charis; Esteban, Antonio; Jadaud, Angélique; Joksimovic, Aleksandar; Kallianiotis, Argyris; Kolitari, Jerina; Manfredi, Chiara; Massuti, Enric; Mifsud, Roberta; Quetglas, Antoni; Refes, Wahid; Sbrana, Mario; Vrgoc, Nedo; Spedicato, Maria Teresa; Mérigot, Bastien

    2015-01-01

    Increasing human pressures and global environmental change may severely affect the diversity of species assemblages and associated ecosystem services. Despite the recent interest in phylogenetic and functional diversity, our knowledge on large spatio-temporal patterns of demersal fish diversity sampled by trawling remains still incomplete, notably in the Mediterranean Sea, one of the most threatened marine regions of the world. We investigated large spatio-temporal diversity patterns by analysing a dataset of 19,886 hauls from 10 to 800 m depth performed annually during the last two decades by standardised scientific bottom trawl field surveys across the Mediterranean Sea, within the MEDITS program. A multi-component (eight diversity indices) and multi-scale (local assemblages, biogeographic regions to basins) approach indicates that only the two most traditional components (species richness and evenness) were sufficient to reflect patterns in taxonomic, phylogenetic or functional richness and divergence. We also put into question the use of widely computed indices that allow comparing directly taxonomic, phylogenetic and functional diversity within a unique mathematical framework. In addition, demersal fish assemblages sampled by trawl do not follow a continuous decreasing longitudinal/latitudinal diversity gradients (spatial effects explained up to 70.6% of deviance in regression tree and generalised linear models), for any of the indices and spatial scales analysed. Indeed, at both local and regional scales species richness was relatively high in the Iberian region, Malta, the Eastern Ionian and Aegean seas, meanwhile the Adriatic Sea and Cyprus showed a relatively low level. In contrast, evenness as well as taxonomic, phylogenetic and functional divergences did not show regional hotspots. All studied diversity components remained stable over the last two decades. Overall, our results highlight the need to use complementary diversity indices through different

  10. Biophysical Factors Affecting the Distribution of Demersal Fish around the Head of a Submarine Canyon Off the Bonney Coast, South Australia

    PubMed Central

    Currie, David R.; McClatchie, Sam; Middleton, John F.; Nayar, Sasi

    2012-01-01

    We sampled the demersal fish community of the Bonney Canyon, South Australia at depths (100–1,500 m) and locations that are poorly known. Seventy-eight species of demersal fish were obtained from 12 depth-stratified trawls along, and to either side, of the central canyon axis. Distributional patterns in species richness and biomass were highly correlated. Three fish assemblage groupings, characterised by small suites of species with narrow depth distributions, were identified on the shelf, upper slope and mid slope. The assemblage groupings were largely explained by depth (ρw = 0.78). Compared to the depth gradient, canyon-related effects are weak or occur at spatial or temporal scales not sampled in this study. A conceptual physical model displayed features consistent with the depth zonational patterns in fish, and also indicated that canyon upwelling can occur. The depth zonation of the fish assemblage was associated with the depth distribution of water masses in the area. Notably, the mid-slope community (1,000 m) coincided with a layer of Antarctic Intermediate Water, the upper slope community (500 m) resided within the core of the Flinders Current, and the shelf community was located in a well-mixed layer of surface water (<450 m depth). PMID:22253907

  11. Demersal fishing disturbance increases predation risk for whelks ( Buccinum undatum L.)

    NASA Astrophysics Data System (ADS)

    Ramsay, Kirsten; Kaiser, Michel J.

    1998-06-01

    Field observations by divers indicated that a high rate of predation of whelks ( Buccinum undatum) by starfish ( Asterias rubens) occurred in an area disturbed by scallop dredging, although these whelks mostly appeared to be alive and externally undamaged. The ability of whelks to escape from starfish was tested in the laboratory after they were dropped or rolled to simulate direct physical contact with bottom fishing gear. Dropping whelks did not significantly affect their escape behaviour, but whelks which had been rolled took significantly longer to right themselves and were significantly less likely to perform an escape response than whelks that had not experienced this treatment. This study suggests that demersal fishing may indirectly increase whelk mortality by increasing their risk of predation.

  12. Taxonomic Distinctness of Demersal Fishes of the California Current: Moving Beyond Simple Measures of Diversity for Marine Ecosystem-Based Management

    PubMed Central

    Tolimieri, Nick; Anderson, Marti J.

    2010-01-01

    Background Large-scale patterns or trends in species diversity have long interested ecologists. The classic pattern is for diversity (e.g., species richness) to decrease with increasing latitude. Taxonomic distinctness is a diversity measure based on the relatedness of the species within a sample. Here we examined patterns of taxonomic distinctness in relation to latitude (ca. 32–48 °N) and depth (ca. 50–1220 m) for demersal fishes on the continental shelf and slope of the US Pacific coast. Methodology/Principal Findings Both average taxonomic distinctness (AvTD) and variation in taxonomic distinctness (VarTD) changed with latitude and depth. AvTD was highest at approximately 500 m and lowest at around 200 m bottom depth. Latitudinal trends in AvTD were somewhat weaker and were depth-specific. AvTD increased with latitude on the shelf (50–150 m) but tended to decrease with latitude at deeper depths. Variation in taxonomic distinctness (VarTD) was highest around 300 m. As with AvTD, latitudinal trends in VarTD were depth-specific. On the shelf (50–150 m), VarTD increased with latitude, while in deeper areas the patterns were more complex. Closer inspection of the data showed that the number and distribution of species within the class Chondrichthyes were the primary drivers of the overall patterns seen in AvTD and VarTD, while the relatedness and distribution of species in the order Scorpaeniformes appeared to cause the relatively low observed values of AvTD at around 200 m. Conclusions/Significance These trends contrast to some extent the patterns seen in earlier studies for species richness and evenness in demersal fishes along this coast and add to our understanding of diversity of the demersal fishes of the California Current. PMID:20498727

  13. Status and trends of the Lake Huron offshore Demersal fish community, 1976-2013

    USGS Publications Warehouse

    Riley, Stephen C.; Roseman, Edward F.; Chriscinske, Margret Ann; Tucker, Taaja R.; Ross, Jason E.; Armenio, Patricia M.; Watson, Nicole M.; Woelmer, Whitney

    2014-01-01

    The USGS Great Lakes Science Center has conducted trawl surveys to assess annual changes in the offshore demersal fish community of Lake Huron since 1973. Sample sites include five ports in U.S. waters with less frequent sampling near Goderich, Ontario. The 2013 fall bottom trawl survey was carried out between 25 October – 21 November 2013 and included all U.S. ports as well as Goderich, ON. The 2013 main basin prey fish biomass estimate for Lake Huron was 47 kilotonnes, less than half of the estimate in 2012 (97 Kt), and approximately 13 percent of the maximum estimate in the time series. The biomass etimate for YAO alewife in 2013 was lower than in 2012, remained much lower than levels observed before the crash in 2004, and populations were dominated by small fish. Estimated biomass of rainbow smelt also decreased and was the second lowest observed in the time series. Estimated YAO bloater biomass in Lake Huron was also reduced compared to 2012. YOY alewife, rainbow smelt, and bloater abundance and biomass increased over 2012. Biomass estimates for deepwater and slimy sculpins, trout-perch, ninespine stickleback, and round goby in 2013 were lower than in 2012 and remained low compared to historic estimates. Wild juvenile lake trout were captured again in 2013, suggesting that natural reproduction by lake trout continues to occur.

  14. Depth-related trends in morphological and functional diversity of demersal fish assemblages in the western Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Farré, Marc; Tuset, Víctor M.; Cartes, Joan E.; Massutí, Enric; Lombarte, Antoni

    2016-09-01

    The morphological and functional traits of fishes are key factors defining the ecological and biological habits of species within ecosystems. However, little is known about how the depth gradient affects these factors. In the present study, several demersal fish assemblages from the Balearic Islands (western Mediterranean Sea) along a wide depth range (40-2200 m) were morphologically, functionally and ecologically described. The morphological characterization of communities was performed using geometric morphometric methods, while the functional structures were obtained by the functional categorization of species and the application of principal coordinates analysis (PCoA). The results revealed that morphospaces presented less richness of body forms as depth increases, although they showed a progressive spreading of species toward the periphery, with a proliferation of more extreme body traits, demonstrating lower morphological redundancy. In addition, a trend toward the elongation of body shape was also observed with depth. Moreover, functional diversity increased with bathymetry up to 1400 m, where it sharply decreased downwards. This decrease was parallel to a progressive fall of H‧ (ecological diversity) up to 2200 m. Functional redundancy progressively decreased until the deepest assemblage (more constantly in the deeper levels), which was almost exclusively dominated by benthopelagic wandering species feeding on suprabenthos. Redundancy analysis (RDA) demonstrated that both morphological and functional spaces showed high variation along the bathymetric range. Mantel test indicated that the majority of species presented similar spatial distribution within the morphospace and functional space, although in the functional space the more abundant species were always located at the periphery. These results demonstrate that the assessment of the morpho-functional variation between marine communities helps to understand the processes that affect the structure and

  15. Estimation of Bottom Trawl Catch Efficiency for Two Demersal Fishes, Atlantic Croaker and White Perch in Chesapeake Bay

    EPA Science Inventory

    We present an efficiency analysis of a fisheries-independent demersal trawl survey in Chesapeake Bay, the largest estuary in the United States, that is presently being used for multi-species fisheries assessment and management. The manuscript presents an in situ analysis of demer...

  16. Trophodynamics of a deep-sea demersal fish assemblage from the bathyal eastern Ionian Sea (Mediterranean Sea)

    NASA Astrophysics Data System (ADS)

    Madurell, T.; Cartes, J. E.

    2005-11-01

    Daily food consumption of the eight dominant demersal fish species of the bathyal eastern Ionian Sea were determined from field data on four seasonal cruises (April 1999, July August 1999, November 1999 and February 2000). Daily ration (DR) estimates ranged from 0.198 to 4.273% WW/WW. Overall, DR estimates were independent of the model used, and they were comparable to the daily consumption of other deep-sea fauna (e.g. fish and crustaceans). Both sharks studied ( Galeus melastomus and Etmopterus spinax) exhibited the highest values of DRs, together with the macrourid Coelorhynchus coelorhynchus in August. Among osteichthyes, DR estimates were related (in a multi-linear regression model) to the nature of their diet (i.e. their trophic level deduced from δ15N isotopic composition, the mean number of prey and trophic diversity). Thus, species feeding at a lower trophic level, ingesting a large number of prey items and with a very diversified diet had higher DR than species from higher trophic level and feeding fewer prey items. By season, the DR of species feeding mainly on mesopelagic prey ( Hoplostethus mediterraneus and Helicolenus dactylopterus) were higher in summer, while DR for benthos/suprabenthos feeders (i.e. C. coelorhynchus and Nezumia sclerorhynchus) were higher in spring. Higher food consumption coincides with maximum food availability, both among mesopelagic feeders (higher availability of euphausiids, Pasiphaea sivado and Sergestes arcticus in summer) and among Macrouridae (higher suprabenthos densities in spring). In a tentative estimate the energy intake deduced from diet (i.e. mean energy value of food ingested) was constant in all seasons for each species studied. Results for the energy intake also indicate higher energy intake in the diet of mesopelagic feeders than in the diet of benthic feeders. Overall results are discussed in relation to the deep-sea ecosystem structure and functioning.

  17. Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. Middle Atlantic Slope

    USGS Publications Warehouse

    Ross, Steve W.; Rhode, Mike; Quattrini, Andrea M.

    2015-01-01

    Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612 m) resulted in 295 h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430 m, 1455–1610 m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400 m. Fishes defining the deeper zone included Lycodes sp.,Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, andAldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme

  18. Congruence in demersal fish, macroinvertebrate, and macroalgal community turnover on shallow temperate reefs.

    PubMed

    Thomson, Russell J; Hill, Nicole A; Leaper, Rebecca; Ellis, Nick; Pitcher, C Roland; Barrett, Neville S; Edgar, Graham J

    2014-03-01

    To support coastal planning through improved understanding of patterns of biotic and abiotic surrogacy at broad scales, we used gradient forest modeling (GFM) to analyze and predict spatial patterns of compositional turnover of demersal fishes, macroinvertebrates, and macroalgae on shallow, temperate Australian reefs. Predictive models were first developed using environmental surrogates with estimates of prediction uncertainty, and then the efficacy of the three assemblages as biosurrogates for each other was assessed. Data from underwater visual surveys of subtidal rocky reefs were collected from the southeastern coastline of continental Australia (including South Australia and Victoria) and the northern coastline of Tasmania. These data were combined with 0.01 degree-resolution gridded environmental variables to develop statistical models of compositional turnover (beta diversity) using GFM. GFM extends the machine learning, ensemble tree-based method of random forests (RF), to allow the simultaneous modeling of multiple taxa. The models were used to generate predictions of compositional turnover for each of the three assemblages within unsurveyed areas across the 6600 km of coastline in the region of interest. The most important predictor for all three assemblages was variability in sea surface temperature (measured as standard deviation from measures taken interannually). Spatial predictions of compositional turnover within unsurveyed areas across the region of interest were remarkably congruent across the three taxa. However, the greatest uncertainty in these predictions varied in location among the different assemblages. Pairwise congruency comparisons of observed and predicted turnover among the three assemblages showed that invertebrate and macroalgal biodiversity were most similar, followed by fishes and macroalgae, and lastly fishes and invertebrate biodiversity, suggesting that of the three assemblages, macroalgae would make the best biosurrogate for

  19. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life.

    PubMed

    Figueras, Antonio; Robledo, Diego; Corvelo, André; Hermida, Miguel; Pereiro, Patricia; Rubiolo, Juan A; Gómez-Garrido, Jèssica; Carreté, Laia; Bello, Xabier; Gut, Marta; Gut, Ivo Glynne; Marcet-Houben, Marina; Forn-Cuní, Gabriel; Galán, Beatriz; García, José Luis; Abal-Fabeiro, José Luis; Pardo, Belen G; Taboada, Xoana; Fernández, Carlos; Vlasova, Anna; Hermoso-Pulido, Antonio; Guigó, Roderic; Álvarez-Dios, José Antonio; Gómez-Tato, Antonio; Viñas, Ana; Maside, Xulio; Gabaldón, Toni; Novoa, Beatriz; Bouza, Carmen; Alioto, Tyler; Martínez, Paulino

    2016-06-01

    The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish. We compare the turbot genome with model fish genomes to investigate teleost chromosome evolution. We observe a conserved macrosyntenic pattern within Percomorpha and identify large syntenic blocks within the turbot genome related to the teleost genome duplication. We identify gene family expansions and positive selection of genes associated with vision and metabolism of membrane lipids, which suggests adaptation to demersal lifestyle and to cold temperatures, respectively. Our data indicate a quick evolution and diversification of flatfish to adapt to benthic life and provide clues for understanding their controversial origin. Moreover, we investigate the genomic architecture of growth, sex determination and disease resistance, key traits for understanding local adaptation and boosting turbot production, by mapping candidate genes and previously reported quantitative trait loci. The genomic architecture of these productive traits has allowed the identification of candidate genes and enriched pathways that may represent useful information for future marker-assisted selection in turbot.

  20. Evaluating light-based geolocation for estimating demersal fish movements in high latitudes

    USGS Publications Warehouse

    Seitz, Andrew C; Norcross, B.L.; Wilson, D.; Nielsen, Jennifer L.

    2006-01-01

    We evaluated light-based geolocation estimates from pop-up satellite tags in high latitudesbecause some of the largest fisheries in the world are in areas where this technique has not been assessed. Daily longitude and latitude were estimated by using two Wildlife Computers software programs: 1) Argos Message Processor (AMP), which summarizes light intensity data transmitted to satellites, and 2) Time Series Processor (TSP), which uses more detailed data obtained from retrieved tags. Three experiments were conducted in the northern Gulf of Alaska using tags placed on 1) Pacific halibut in outdoor aquaria, 2) a fixed mooring line at various depths and 3) wild Pacific halibut. TSP performed better than AMP because the percentage of days with geolocation estimates was greater and the mean error magnitude and bias were smaller for TSP and increased with depth for both programs; however, latitude errors were much greater than longitude errors at all depths. Light-based geolocation enabled us to discern basin-scale movements and showed that the Pacific halibut in our study remained within the Gulf of Alaska. We conclude that this technique provides a feasible method for inferring large-scale population structure for demersal fishes in high latitudes. 

  1. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

    PubMed Central

    Figueras, Antonio; Robledo, Diego; Corvelo, André; Hermida, Miguel; Pereiro, Patricia; Rubiolo, Juan A.; Gómez-Garrido, Jèssica; Carreté, Laia; Bello, Xabier; Gut, Marta; Gut, Ivo Glynne; Marcet-Houben, Marina; Forn-Cuní, Gabriel; Galán, Beatriz; García, José Luis; Abal-Fabeiro, José Luis; Pardo, Belen G.; Taboada, Xoana; Fernández, Carlos; Vlasova, Anna; Hermoso-Pulido, Antonio; Guigó, Roderic; Álvarez-Dios, José Antonio; Gómez-Tato, Antonio; Viñas, Ana; Maside, Xulio; Gabaldón, Toni; Novoa, Beatriz; Bouza, Carmen; Alioto, Tyler; Martínez, Paulino

    2016-01-01

    The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish. We compare the turbot genome with model fish genomes to investigate teleost chromosome evolution. We observe a conserved macrosyntenic pattern within Percomorpha and identify large syntenic blocks within the turbot genome related to the teleost genome duplication. We identify gene family expansions and positive selection of genes associated with vision and metabolism of membrane lipids, which suggests adaptation to demersal lifestyle and to cold temperatures, respectively. Our data indicate a quick evolution and diversification of flatfish to adapt to benthic life and provide clues for understanding their controversial origin. Moreover, we investigate the genomic architecture of growth, sex determination and disease resistance, key traits for understanding local adaptation and boosting turbot production, by mapping candidate genes and previously reported quantitative trait loci. The genomic architecture of these productive traits has allowed the identification of candidate genes and enriched pathways that may represent useful information for future marker-assisted selection in turbot. PMID:26951068

  2. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life.

    PubMed

    Figueras, Antonio; Robledo, Diego; Corvelo, André; Hermida, Miguel; Pereiro, Patricia; Rubiolo, Juan A; Gómez-Garrido, Jèssica; Carreté, Laia; Bello, Xabier; Gut, Marta; Gut, Ivo Glynne; Marcet-Houben, Marina; Forn-Cuní, Gabriel; Galán, Beatriz; García, José Luis; Abal-Fabeiro, José Luis; Pardo, Belen G; Taboada, Xoana; Fernández, Carlos; Vlasova, Anna; Hermoso-Pulido, Antonio; Guigó, Roderic; Álvarez-Dios, José Antonio; Gómez-Tato, Antonio; Viñas, Ana; Maside, Xulio; Gabaldón, Toni; Novoa, Beatriz; Bouza, Carmen; Alioto, Tyler; Martínez, Paulino

    2016-06-01

    The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish. We compare the turbot genome with model fish genomes to investigate teleost chromosome evolution. We observe a conserved macrosyntenic pattern within Percomorpha and identify large syntenic blocks within the turbot genome related to the teleost genome duplication. We identify gene family expansions and positive selection of genes associated with vision and metabolism of membrane lipids, which suggests adaptation to demersal lifestyle and to cold temperatures, respectively. Our data indicate a quick evolution and diversification of flatfish to adapt to benthic life and provide clues for understanding their controversial origin. Moreover, we investigate the genomic architecture of growth, sex determination and disease resistance, key traits for understanding local adaptation and boosting turbot production, by mapping candidate genes and previously reported quantitative trait loci. The genomic architecture of these productive traits has allowed the identification of candidate genes and enriched pathways that may represent useful information for future marker-assisted selection in turbot. PMID:26951068

  3. North Atlantic demersal deep-water fish distribution and biology: present knowledge and challenges for the future.

    PubMed

    Bergstad, O A

    2013-12-01

    This paper summarizes knowledge and knowledge gaps on benthic and benthopelagic deep-water fishes of the North Atlantic Ocean, i.e. species inhabiting deep continental shelf areas, continental and island slopes, seamounts and the Mid-Atlantic Ridge. While several studies demonstrate that distribution patterns are species specific, several also show that assemblages of species can be defined and such assemblages are associated with circulatory features and water mass distributions. In many subareas, sampling has, however, been scattered, restricted to shallow areas or soft substrata, and results from different studies tend to be difficult to compare quantitatively because of sampler differences. Particularly, few studies have been conducted on isolated deep oceanic seamounts and in Arctic deep-water areas. Time series of data are very few and most series are short. Recent studies of population structure of widely distributed demersal species show less than expected present connectivity and considerable spatial genetic heterogeneity and complexity for some species. In other species, genetic homogeneity across wide ranges was discovered. Mechanisms underlying the observed patterns have been proposed, but to test emerging hypotheses more species should be investigated across their entire distribution ranges. Studies of population biology reveal greater diversity in life-history strategies than often assumed, even between co-occurring species of the same family. Some slope and ridge-associated species are rather short-lived, others very long-lived, and growth patterns also show considerable variation. Recent comparative studies suggest variation in life-history strategies along a continuum correlated with depth, ranging from shelf waters to the deep sea where comparatively more species have extended lifetimes, and slow rates of growth and reproduction. Reproductive biology remains too poorly known for most deep-water species, and temporal variation in recruitment has

  4. North Atlantic demersal deep-water fish distribution and biology: present knowledge and challenges for the future.

    PubMed

    Bergstad, O A

    2013-12-01

    This paper summarizes knowledge and knowledge gaps on benthic and benthopelagic deep-water fishes of the North Atlantic Ocean, i.e. species inhabiting deep continental shelf areas, continental and island slopes, seamounts and the Mid-Atlantic Ridge. While several studies demonstrate that distribution patterns are species specific, several also show that assemblages of species can be defined and such assemblages are associated with circulatory features and water mass distributions. In many subareas, sampling has, however, been scattered, restricted to shallow areas or soft substrata, and results from different studies tend to be difficult to compare quantitatively because of sampler differences. Particularly, few studies have been conducted on isolated deep oceanic seamounts and in Arctic deep-water areas. Time series of data are very few and most series are short. Recent studies of population structure of widely distributed demersal species show less than expected present connectivity and considerable spatial genetic heterogeneity and complexity for some species. In other species, genetic homogeneity across wide ranges was discovered. Mechanisms underlying the observed patterns have been proposed, but to test emerging hypotheses more species should be investigated across their entire distribution ranges. Studies of population biology reveal greater diversity in life-history strategies than often assumed, even between co-occurring species of the same family. Some slope and ridge-associated species are rather short-lived, others very long-lived, and growth patterns also show considerable variation. Recent comparative studies suggest variation in life-history strategies along a continuum correlated with depth, ranging from shelf waters to the deep sea where comparatively more species have extended lifetimes, and slow rates of growth and reproduction. Reproductive biology remains too poorly known for most deep-water species, and temporal variation in recruitment has

  5. Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

    PubMed

    Brown, Alastair; Thatje, Sven

    2014-05-01

    Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity-depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity-depth pattern over time. Thermal

  6. Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

    PubMed

    Brown, Alastair; Thatje, Sven

    2014-05-01

    Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity-depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity-depth pattern over time. Thermal

  7. Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth

    PubMed Central

    Brown, Alastair; Thatje, Sven

    2014-01-01

    Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity–depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity–depth pattern over time

  8. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  9. The Seascape of Demersal Fish Nursery Areas in the North Mediterranean Sea, a First Step Towards the Implementation of Spatial Planning for Trawl Fisheries

    PubMed Central

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M. Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C.; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J.; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  10. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  11. Demersal fishes from the Antarctic shelf and deep sea: A diet study based on fatty acid patterns and gut content analyses

    NASA Astrophysics Data System (ADS)

    Würzberg, Laura; Peters, Janna; Flores, Hauke; Brandt, Angelika

    2011-10-01

    The gut contents and fatty acid composition of 49 fish belonging to five Antarctic demersal families (Nototheniidae, Macrouridae, Channichtyidae, Bathydraconidae and Artedidraconidae) sampled at two stations at the Southern Ocean shelf and deep sea (600 and 2150 m) were analysed in order to identify their main food resource by linking trophic biomarkers with the dietary items found in the fish guts. Main food items of most fish analysed were amphipod crustaceans (e.g. in 63% of Trematomus bernachii guts) and polychaetes (e.g. in 80% of Bathydraco sp. guts), but other food items including fish, other crustaceans and gastropods were also ingested. The most prominent fatty acids found were 20:5( n-3), 16:0, 22:6( n-3) and 18:1( n-9). The results of gut content and fatty acid analyses indicate that all fish except the Channichthyidae share similar food resources irrespective of their depth distribution, i.e. benthic amphipods and polychaetes. A difference of the dietary spectrum can be observed with ontogenetic phases rather than between species, as high values of typical calanoid copepod marker fatty acids as 22:1( n-11) indicate that younger (smaller) specimens include more zooplankton in their diet.

  12. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs.

    PubMed

    van Denderen, P Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D

    2013-10-22

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management.

  13. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs

    PubMed Central

    van Denderen, P. Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D.

    2013-01-01

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  14. Energy profiling of demersal fish: a case-study in wind farm artificial reefs.

    PubMed

    De Troch, Marleen; Reubens, Jan T; Heirman, Elke; Degraer, Steven; Vincx, Magda

    2013-12-01

    The construction of wind farms introduces artificial hard substrates in sandy sediments. As Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) tend to aggregate in order to feed around these reefs, energy profiling and trophic markers were applied to study their feeding ecology in a wind farm in the Belgian part of the North Sea. The proximate composition (carbohydrates, proteins and lipids) differed significantly between liver and muscle tissue but not between fish species or between their potential prey species. Atlantic cod showed to consume more energy than pouting. The latter had a higher overall energy reserve and can theoretically survive twice as long on the available energy than cod. In autumn, both fish species could survive longer on their energy than in spring. Polyunsaturated fatty acids were found in high concentrations in fish liver. The prey species Jassa and Pisidia were both rich in EPA while Jassa had a higher DHA content than Pisidia. Energy profiling supported the statement that wind farm artificial reefs are suitable feeding ground for both fish species. Sufficient energy levels were recorded and there is no indication of competition.

  15. Energy profiling of demersal fish: a case-study in wind farm artificial reefs.

    PubMed

    De Troch, Marleen; Reubens, Jan T; Heirman, Elke; Degraer, Steven; Vincx, Magda

    2013-12-01

    The construction of wind farms introduces artificial hard substrates in sandy sediments. As Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) tend to aggregate in order to feed around these reefs, energy profiling and trophic markers were applied to study their feeding ecology in a wind farm in the Belgian part of the North Sea. The proximate composition (carbohydrates, proteins and lipids) differed significantly between liver and muscle tissue but not between fish species or between their potential prey species. Atlantic cod showed to consume more energy than pouting. The latter had a higher overall energy reserve and can theoretically survive twice as long on the available energy than cod. In autumn, both fish species could survive longer on their energy than in spring. Polyunsaturated fatty acids were found in high concentrations in fish liver. The prey species Jassa and Pisidia were both rich in EPA while Jassa had a higher DHA content than Pisidia. Energy profiling supported the statement that wind farm artificial reefs are suitable feeding ground for both fish species. Sufficient energy levels were recorded and there is no indication of competition. PMID:24210053

  16. Demersal Fisheries of the Arabian Sea, the Gulf of Oman and the Arabian Gulf

    NASA Astrophysics Data System (ADS)

    Siddeek, M. S. M.; Fouda, M. M.; Hermosa, G. V.

    1999-08-01

    The demersal fisheries of the Arabian Sea, the Gulf of Oman and the Arabian Gulf are reviewed. The region comprises eight countries: Oman, United Arab Emirates (U.A.E.), Qatar, Saudi Arabia, Bahrain, Kuwait, Iraq and Iran. Over 350 commercial fish species, eight shrimp species, two spiny lobster species, one shovel nose lobster species, one cuttlefish species, one crab species, and one abalone species support the demersal fisheries in the continental shelves of the three regions. Artisanal and industrial vessels with over 120 000 fishermen were involved in demersal fisheries. Fishing boats include fish and shrimp trawlers (wooden and steel hulled), large wooden boats (dhow) with inboard engines, small dhows with outboard engines, and fibreglass boats. Fishing gear consists of trawls, bottom gill nets, traps (wire mesh and plastic types), barrier traps, hand lines, and bare hands and knives (to dislodge abalone). Demersal fish (primarily Lethrinidae, Sparidae, Serranidae, Siganidae, Sciaenidae, Stromateidae, Lutjanidae, Trichiuridae, and Nemipteridae) and shrimp (primarily Penaeus semisulcatus, Metapenaeus affinis, Parapenaeopsis stylifera, and Penaeus merguiensis) were the two commercial demersal resources. Approximately 198 000-214 000 tonnes (t) of demersals were landed annually during 1988-1993, accounting for nearly 40% of the total marine landings (475 000-552 000 t). This percentage, however varied among countries: 25% in Oman, 32% in U.A.E., 71% in Qatar, 52% in Saudi Arabia, 56% in Bahrain, 55% in Kuwait, close to 100% in Iraq, and 41% in Iran. Fishing effort on certain stocks may have been below the optimum level (e.g. certain Omani demersal fish), near the optimum level (e.g. Omani shrimp), or above the optimum level (e.g. Arabian Gulf shrimp and demersal fish). Overexploitation led to restriction of fishing effort by limiting fishing licences, regulating fishing gear (mesh size) and capture size, closing fishing areas, restricting fishing season, and

  17. Benthos and demersal fish habitats in the German Exclusive Economic Zone (EEZ) of the North Sea

    NASA Astrophysics Data System (ADS)

    Neumann, Hermann; Reiss, Henning; Ehrich, Siegfried; Sell, Anne; Panten, Kay; Kloppmann, Matthias; Wilhelms, Ingo; Kröncke, Ingrid

    2013-09-01

    We compiled data from different monitoring surveys to analyse and compare community and diversity patterns of fish, epi- and infauna in the German Exclusive Economic Zone (EEZ) of the North Sea in order to identify benthic habitats common to all faunal components. We found congruent community patterns of fish, epi- and infauna for the coastal waters, the Oysterground and the area called "Duck's Bill", which coincided with specific abiotic characteristics of these regions. The three regions were defined as special habitats for fish, epi- and infauna species in the German EEZ. The differences in the seasonal variability of abiotic factors seem to be the most important discriminating abiotic characteristic for the three habitats. The spatial distribution of fish, epifauna and infauna communities remained stable over time although habitat characteristics such as sea surface temperature increased due to climate change. However, it is expected that the coastal habitat will be more sensitive to future climate change effects in contrast to the Oysterground and Duck's Bill habitat.

  18. Habitat Selection and Temporal Abundance Fluctuations of Demersal Cartilaginous Species in the Aegean Sea (Eastern Mediterranean)

    PubMed Central

    Maravelias, Christos D.; Tserpes, George; Pantazi, Maria; Peristeraki, Panagiota

    2012-01-01

    Predicting the occurrence of keystone top predators in a multispecies marine environment, such as the Mediterranean Sea, can be of considerable value to the long-term sustainable development of the fishing industry and to the protection of biodiversity. We analysed fisheries independent scientific bottom trawl survey data of two of the most abundant cartilaginous fish species (Scyliorhinus canicula, Raja clavata) in the Aegean Sea covering an 11-year sampling period. The current findings revealed a declining trend in R. clavata and S. canicula abundance from the late ′90 s until 2004. Habitats with the higher probability of finding cartilaginous fish present were those located in intermediate waters (depth: 200–400 m). The present results also indicated a preferential species' clustering in specific geographic and bathymetric regions of the Aegean Sea. Depth appeared to be one of the key determining factors for the selection of habitats for all species examined. With cartilaginous fish species being among the more biologically sensitive fish species taken in European marine fisheries, our findings, which are based on a standardized scientific survey, can contribute to the rational exploitation and management of their stocks by providing important information on temporal abundance trends and habitat preferences. PMID:22536389

  19. Sidescan sonar as a tool for detection of demersal fish habitats

    USGS Publications Warehouse

    Able, Kenneth W.; Twichell, David C.; Grimes, Churchill B.; Jones, R. S.

    1987-01-01

    Sidescan sonar can be an effective tool for the determination of the habitat distribution of commercially important species.  This technique has the advantage of rapidly mapping large areas of the seafloor.  Sidescan images (sonographs) may also help to identify appropriate fishing gears for different types of seafloor or areas to be avoided with certain types of gears.  During the early stages of exploration, verification of sidescan sonar sonographs is critical to successful identification of important habitats.  Tilefishes (Lopholatilus and Caulolatilus) are especially good target species because the construct large burrows in the seafloor or live around boulders, both of which are easily detectable on sonographs.  In some special circumstances the estimates of tilefish burrow densities from sonographs can be used to estimate standing stock. In many localities the burrow and boulder habitats of tilefish are shared with other commercially important species such as American lobsters, Homarus americanus; cusk, Brosme brosme; and ocean pout, Macrozoarces americanus.

  20. Influence of the hydrodynamic conditions on the accessibility of Aristeus antennatus and other demersal species to the deep water trawl fishery off the Balearic Islands (western Mediterranean)

    NASA Astrophysics Data System (ADS)

    Amores, Angel; Rueda, Lucía; Monserrat, Sebastià; Guijarro, Beatriz; Pasqual, Catalina; Massutí, Enric

    2014-10-01

    Monthly catches per unit of effort (CPUE) of adult red shrimp (Aristeus antennatus), reported in the deep water bottom trawl fishery developed on the Sóller fishing ground off northern Mallorca (Western Mediterranean), and the mean ocean surface vorticity in the surrounding areas are compared between 2000 and 2010. A good correlation is found between the rises in the surrounding surface vorticity and the drops in the CPUE of the adult red shrimp. This correlation could be explained by assuming that most of the surface vorticity episodes could reach the bottom, increasing the seabed velocities and producing sediment resuspension, which could affect the near bottom water turbidity. A. antennatus would respond to this increased turbidity disappearing from the fishing grounds, probably moving downwards to the deeper waters. This massive displacement of red shrimp specimens away from the fishing grounds would consequently decrease their accessibility to fishing exploitation. Similar although more intense responses have been observed during the downslope shelf dense water current episodes that occurred in a submarine canyon, northeast of the Iberian peninsula. The proposed mechanism suggesting how the surface vorticity observed can affect the bottom sediments is investigated using a year-long moored near-bottom current meter and a sediment trap moored near the fishing grounds. The relationship between vorticity and catches is also explored for fish species (Galeus melastomus, Micromesistius poutassou, Phycis blennoides) and other crustacean (Geryon longipes and Nephrops norvegicus), considered as by-catch of the deep water fishery in the area. Results appear to support the suggestion that the water turbidity generated by the vorticity episodes is significant enough to affect the dynamics of the demersal species.

  1. Pelagic to demersal transition in a coral-reef fish, the orbicular batfish Platax orbicularis.

    PubMed

    Leis, J M; Hay, A C; Sasal, P; Hicks, A S; Galzin, R

    2013-09-01

    Behavioural and ecological observations were made on young, reared Platax orbicularis in Opunohu Bay, Moorea, French Polynesia, during their transition from the pelagic, dispersive stage to the reef-orientated demersal stage. Seventy-two young P. orbicularis (17-75 mm standard length, LS ) were released in the pelagic zone and 20 (40-70 mm LS ) adjacent to the reefs. Swimming speed was slow (mean 5·2 cm s(-1) ) and independent of size. An ontogenetic descent was observed: the smallest P. orbicularis swam at the surface, medium-sized P. orbicularis swam in midwater (mean 5-13 m) and the largest P. orbicularis swam to the bottom, where many lay on their sides. Platax orbicularis swam southerly on average, away from the ocean and into the bay. Smaller P. orbicularis were more likely to swim directionally than larger individuals. Young P. orbicularis released near reef edges swam at similar, but more variable speeds (mean 6·6 cm s(-1) ). About half of those released near reefs swam away, but fewer swam away from an inshore fringing reef than from a patch reef near the bay mouth. Many P. orbicularis swam up the slope onto the reef top, but the little settlement observed was near the reef base. Average, near-reef swimming direction was also southerly. Some reef residents, in particular the triggerfish Balistapus undulatus, harassed young P. orbicularis. PMID:23991868

  2. Efficacy of a vacuum benthos sampler for collecting demersal fish eggs from gravel substratum

    USGS Publications Warehouse

    Ruetz, C. R.; Jennings, C.A.

    1997-01-01

    We used two densities of eggs (low=900 eggs/m2; high=5100 eggs/m2) in laboratory experiments to estimate the recovery efficiency of the Brown benthos sampler for collecting fish eggs from gravel substrate and to determine if differences (e.g., 5-fold) in egg density in the substratum could be detected with the sampler. The mean egg recovery efficiency of the sampler in the low and high density treatments was 30% (SE=8.7) and 35% (SE=3.8), respectively. The difference between the treatment means was not significant. Therefore, data from the two treatments were pooled and used to estimate the recovery efficiency of the sampler (32.7%, SE=4.4). However, we were able to detect a 5?? difference in the number of eggs collected with the sampler between the two treatments. Our estimate of the recovery efficiency of the sampler for collecting fish eggs was less than those reported for the sampler's efficiency for collecting benthic macroinvertebrates. The low recovery efficiency of the sampler for collecting fish eggs does not lessen the utility of the device. Rather, ecologists planning to use the sampler must estimate the recovery efficiency of target fauna, especially if density estimates are to be calculated, because recovery efficiency probably is less than 100%. ?? Munksgaard, 1997.

  3. Exxon Valdez oil spill. State/federal natural resource damage assessment. Injury to demersal rockfish and shallow reef habitats in Prince William Sound, 1989-1991. Subtidal study number 6. Fish/shellfish study number 17. Final report

    SciTech Connect

    1994-09-01

    Demersal rockfish (Sebastes spp.) in Prince William Sound were studied from 1989 through 1991 to assess injury due to the Exxon Valdez oil spill. Injury was assessed by establishing the exposure of rockfish to petroleum hydrocarbons and then determining if any histopathological lesions occurred with increased frequency in fish from sites with oil-exposed fish.

  4. Relationship between pelagic larval duration and abundance of tropical fishes on temperate coasts of Japan.

    PubMed

    Soeparno; Nakamura, Y; Shibuno, T; Yamaoka, K

    2012-02-01

    The influence of pelagic larval duration (PLD) and egg type dispersal capabilities of 35 demersal and pelagic-spawning tropical fish species is examined in relation to their abundance on the temperate coasts of Japan. The PLDs of pelagic spawners were significantly longer than those of demersal spawners, and a high occurrence of pelagic spawners on the temperate coasts suggests that these fishes are more easily transported to temperate coasts than demersal spawners. For demersal spawners, the common species on the temperate coasts had significantly longer PLDs than the rare species; this suggests that PLD is a major factor influencing the distribution patterns of tropical demersal spawners on temperate coasts. Moreover, a negative correlation between PLD and the abundance of some species of pelagic and demersal spawners suggests the presence of reproductively active fishes in northern subtropical and even in temperate waters.

  5. Correlations between benthic habitats and demersal fish assemblages — A case study on the Dogger Bank (North Sea)

    NASA Astrophysics Data System (ADS)

    Sell, Anne F.; Kröncke, Ingrid

    2013-07-01

    The interdependence between groundfish assemblages and habitat properties was investigated on the Dogger Bank in the North Sea. Abiotic habitat parameters considered included topography, hydrographic conditions, sediment composition, and the biotic habitat variable the prevailing benthic invertebrates. Distinct epi- and infauna communities occurred at different locations on the Dogger Bank. Fish assemblages were clearly linked to both the biotic and abiotic habitat characteristics. Overall, fish and benthic communities revealed similar spatial distribution, represented in the respective clusters of characteristic and abundant species. Distribution patterns corresponded with the prevailing abiotic conditions such as depth and sediment composition, which appear to relate to autecological preferences of individual species. The apparently most generalist species, grey gurnard (Eutrigla gurnardus) and dab (Limanda limanda) occurred at all stations and dominated in terms of biomass in most cases. The absolute numbers of grey gurnards were related to the abundance of suitable prey, invertebrate and fish species, which stomach analyses revealed as part of the diet in an independent study during the same research cruise. Haddock (Melanogrammus aeglefinus) and whiting (Merlangius merlangus) were only abundant at deep stations along the flanks of the bank. The occurrence of lemon sole (Microstomus kitt), American plaice (Hippoglossoides platessoides) and cod (Gadus morhua) was also positively correlated with depth, whereas especially lesser weever (Echiichthys vipera), sandeel species and solenette (Buglossidium luteum) occurred predominantly at the shallower sites. At the same time, individual fish species such as solenette and lesser weever were associated with high densities of selected epi- or infauna species.

  6. Comparison of hatching mode in pelagic and demersal eggs of two closely related species in the order pleuronectiformes.

    PubMed

    Kawaguchi, Mari; Sano, Kaori; Yoshizaki, Norio; Shimizu, Daisuke; Fujinami, Yuichiro; Noda, Tsutomu; Yasumasu, Shigeki

    2014-11-01

    We compared several characteristics of the pelagic eggs of Verasper variegatus with those of demersal eggs of Pseudopleuronectes yokohamae, both in the order Pleuronectiformes (halibuts or flatfishes). V. variegatus eggs had about twice the diameter of P. yokohamae eggs. However, the total egg protein weight of P. yokohamae was similar to that of V. variegatus. The specific gravity of P. yokohamae eggs was calculated to be 7-fold that of V. variegatus. The difference in size is the main feature distinguishing the two types of egg. The thickness of the egg envelope of P. yokohamae- more than twice that of V. variegatus-must affect the manner of hatching. The amount of hatching enzyme synthesized in pre-hatching embryo was estimated to be larger in P. yokohamae than V. variegatus. The distribution of hatching gland cells differed between the species. In V. variegates embryos, these were located on the yolk sac as a narrow ring-shaped belt, resulting in cleavage of the egg envelope into two parts by digesting a limited region of the egg envelope, called "rim-hatching". The hatching gland cells of P. yokohamae embryos were distributed all over the surface of the yolk sac, forming a hole through which the embryo could escape. Thus, the location of the hatching gland cells in pre-hatching embryos varied during the evolution of the Pleuronectiformes, depending on the egg type and manner of hatching.

  7. Reconstruction of demersal fisheries history on the Condor seamount, Azores archipelago (Northeast Atlantic)

    NASA Astrophysics Data System (ADS)

    Menezes, Gui M.; Diogo, Hugo; Giacomello, Eva

    2013-12-01

    Commercial fishing data were analyzed in order to reconstruct the history of the demersal fishery on Condor seamount, a temporarily protected area in the Northeast Atlantic (Azores). Considering the eight commercially most important demersal fish species, estimates for the period 1993-2009 revealed that on average landings from this area represented 2% of the annual landings by weight of these species in the Azores. Over this period the average estimated volume of the Condor landings was 71t/year, with the blackspot seabream (Pagellus bogaraveo) and the wreckfish (Polyprion americanus) representing about 54% of the landings, and the average value was €346 thousand per year. Annual trends of landings and of landings per unit effort suggest species-specific abundance responses to fishing, but most of the exploited species may have been significantly reduced at the Condor seamount. The proportion of large specimens may have declined in some of the studied species. Results suggest that artisanal fisheries are capable of causing important reductions in abundance levels of demersal species living on seamounts. Species life history characteristics, their degree of residency, and dependence on outside source areas may be important determinants for the status and the time scales required for recovery to previous abundances of the species. With the current Condor seamount fishing moratorium, exploitation rate has been reduced to zero and this is a unique opportunity to study the responses of the different previously exploited species to the reduced fishing mortality. New understanding may benefit seamount fisheries management in the region.

  8. Multi Year Observations Reveal Variability in Residence of a Tropical Demersal Fish, Lethrinus nebulosus: Implications for Spatial Management

    PubMed Central

    Pillans, Richard D.; Bearham, Douglas; Boomer, Andrew; Downie, Ryan; Patterson, Toby A.; Thomson, Damian P.; Babcock, Russel C.

    2014-01-01

    Off the Ningaloo coast of North West Western Australia, Spangled Emperor Lethrinus nebulosus are among the most highly targeted recreational fish species. The Ningaloo Reef Marine Park comprises an area of 4,566 km2 of which 34% is protected from fishing by 18 no-take sanctuary zones ranging in size from 0.08–44.8 km2. To better understand Spangled Emperor movements and the adequacy of sanctuary zones within the Ningaloo Reef Marine Park for this species, 84 Spangled Emperor of a broad spectrum of maturity and sex were tagged using internal acoustic tags in a range of lagoon and reef slope habitats both inside and adjacent to the Mangrove Bay Sanctuary zone. Kernel Utilisation Distribution (KUD) was calculated for 39 resident individuals that were detected for more than 30 days. There was no relationship with fish size and movement or site fidelity. Average home range (95% KUD) for residents was 8.5±0.5 km2 compared to average sanctuary zone size of 30 km2. Calculated home range was stable over time resulting in resident animals tagged inside the sanctuary zone spending ∼80% of time within the sanctuary boundaries. The number of fish remaining within the array of receivers declined steadily over time and after one year more than 60% of tagged fish had moved outside the sanctuary zone and also beyond the 28 km2 array of receivers. Long term monitoring identified the importance of shifting home range and was essential for understanding overall residency within protected areas and also for identifying spawning related movements. This study indicates that despite exhibiting stable and small home ranges over periods of one to two years, more than half the population of spangled emperor move at scales greater than average sanctuary size within the Ningaloo Reef Marine Park. PMID:25181537

  9. Feeding ecology of some fish species occurring in artisanal fishery of Socotra Island (Yemen).

    PubMed

    Hassan Ali', Mohammed Kaed; Belluscio, Andrea; Ventura, Daniele; Ardizzone, Giandomenico

    2016-04-30

    The demersal species Lethrinus borbonicus, Lethrinus mahsena, Lethrinus microdon, Lethrinus nebulosus, Lutjanus bohar, Lutjanus gibbus, Lutjanus kasmira, Epinephelus fasciatus, Epinephelus stoliczkae, Carangoides gymnostethus and Euthynnus affinis are important coastal fishes species of the northern coast of Socotra (Yemen), exploited by local fishery. The biology and feeding ecology of these species are poorly known in the area. A total of 1239 specimens were sampled from the main fishing landing site of the island (Hadibo). Total length and weight were measured, stomach contents were analyzed, diet overlap, Fulton's Condition index, and trophic levels were estimated. C. gymnostethus, L. microdon and L. kasmira occupied the highest position (T=4.50), L. nebulosus occupied the lower one (TL=3.41). The role of the increasing abundance of small pelagic fish in the diet of many species after the upwelling event is evident, but also different feeding strategies are reported, according to fish ecology.

  10. Three dimensional marine seismic survey has no measurable effect on species richness or abundance of a coral reef associated fish community.

    PubMed

    Miller, Ian; Cripps, Edward

    2013-12-15

    Underwater visual census was used to determine the effect of a three dimensional seismic survey on the shallow water coral reef slope associated fish community at Scott Reef. A census of the fish community was conducted on six locations at Scott Reef both before and after the survey. The census included small site attached demersal species belonging to the family Pomacentridae and larger roving demersal species belonging to the non-Pomacentridae families. These data were combined with a decade of historical data to assess the impact of the seismic survey. Taking into account spatial, temporal, spatio-temporal and observer variability, modelling showed no significant effect of the seismic survey on the overall abundance or species richness of Pomacentridae or non-Pomacentridae. The six most abundant species were also analysed individually. In all cases no detectable effect of the seismic survey was found on the abundance of these fish species at Scott Reef.

  11. [Variations of fish species diversity, faunal assemblage, and abundances in Daya Bay in 1980-2007].

    PubMed

    Wang, Xue-hui; Du, Fi-yan; Qiu, Yong-song; Li, Chun-hou; Sun, Dian-rong; Jia, Xiao-ping

    2010-09-01

    Based on the 2004-2005 otter trawl survey data and the 1980-2007 relevant historical records, this paper analyzed the variations of fish species composition, faunal assemblage, diversity indices, dominant species, and abundance in Daya Bay. In the 2004-2005 trawl survey, a total of 107 fish species were recorded, belonging to 50 families and 13 orders, among which, meso-demersal fish were predominant, with 48 species recorded, and followed by pelagic and demersal fishes, with 37 and 21 species, respectively. The fishes in the Bay belonged to tropical and subtropical fauna, with the dominance of warm water fishes (97 species) and warm-temperate water fishes (10 species). The diversity index was the highest in summer (3.82), followed by in winter (3.37) and autumn (3.00), and the lowest in spring (2.40). The seasonal variation of Pielou evenness index mimicked that of diversity index. In 1980-2007, the characteristics of fish community in the Bay changed obviously. The species number reduced from 157 species in the 1980s to 110 species in the 1990s and to 107 species in 2004-2005, and the dominant species shifted from the high-value fishes such as hairtail and pomfret in the 1980s to low-value fishes such as sardine fish, anchovy, and juvenile porgy. A non-linear regression model composed of inter-annual trend and seasonal cycle was used to simulate the changes of fish stock density in 1980-1999 and 1990-2007, and the results indicated that in the two periods, the fish stock density in the Bay all showed a decreasing trend, but the decrement was larger in 1990-2007 than in 1980-1999. The seasonal variation of the stock density in 1980-1999 was relatively small, with an amplitude being 0.099, while that in 1990-2007 was relatively larger, with the amplitude being 0.420, illustrating that the fish abundance in the Bay had a larger seasonal fluctuation in 1990-2007.

  12. Distribution, population biology, and trophic ecology of the deepwater demersal fish Halosauropsis macrochir (Pisces: Halosauridae) on the mid-Atlantic Ridge.

    PubMed

    Bergstad, Odd Aksel; Clark, Laura; Hansen, Hege Øverbø; Cousins, Nicola

    2012-01-01

    Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores) with greatest abundance at 1700-3500 m. All sizes, ranging from 10-76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2-36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size. PMID:22384030

  13. Decrease of Zn, Cd and Pb concentrations in marine fish species over a decade as response to reduction of anthropogenic inputs: the example of Tagus estuary.

    PubMed

    Raimundo, Joana; Pereira, Patrícia; Caetano, Miguel; Cabrita, Maria Teresa; Vale, Carlos

    2011-12-01

    Concentrations of Zn, Cd and Pb were measured in muscle of pelagic, demersal and benthic fishes, captured in the coastal area adjoining the Tagus estuary (Portugal), in 1998 and 2010. Additionally, Pb and Cd were determined in estuarine waters, showing a pronounced decrease between 1999 and 2010. Accordingly, specimens captured in 2010 presented significantly lower metal concentrations than individuals caught in 1998. Reductions were more evident for Pb (reduction of 59-99%) than for Cd (14-93%) and Zn (17-54%). Values in pelagic and demersal species exhibited higher reductions than in benthic species. Decrease of metal concentrations in fish appears thus to reflect the improvement of estuarine water quality as anthropogenic sources have been reduced or eliminated. Furthermore, it emphasises the usefulness of the descriptor "Contaminants in Fish" to assess the efficiency of measures to achieve a good environmental status, in the scope of the Marine Strategy Framework Directive.

  14. Ecology and Genetic Structure of Zoonotic Anisakis spp. from Adriatic Commercial Fish Species

    PubMed Central

    Poljak, Vedran

    2014-01-01

    Consumption of raw or thermally inadequately treated fishery products represents a public health risk, with the possibility of propagation of live Anisakis larvae, the causative agent of the zoonotic disease anisakidosis, or anisakiasis. We investigated the population dynamics of Anisakis spp. in commercially important fish—anchovies (Anisakis), sardines (Sardina pilchardus), European hake (Merluccius merluccius), whiting (Merlangius merlangus), chub mackerel (Scomber japonicus), and Atlantic bluefin tuna (Thunnus thynnus)—captured in the main Adriatic Sea fishing ground. We observed a significant difference in the numbers of parasite larvae (1 to 32) in individual hosts and between species, with most fish showing high or very high Anisakis population indices. Phylogenetic analysis confirmed that commercial fish in the Adriatic Sea are parasitized by Anisakis pegreffii (95.95%) and Anisakis simplex sensu stricto (4.05%). The genetic structure of A. pegreffii in demersal, pelagic, and top predator hosts was unstructured, and the highest frequency of haplotype sharing (n = 10) was between demersal and pelagic fish. PMID:24317085

  15. Fishing down the largest coral reef fish species.

    PubMed

    Fenner, Douglas

    2014-07-15

    Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism.

  16. Fishing down the largest coral reef fish species.

    PubMed

    Fenner, Douglas

    2014-07-15

    Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism. PMID:24889317

  17. Acoustical Detection of High-Density Krill Demersal Layers in the Submarine Canyons off Georges Bank.

    PubMed

    Greene, C H; Wiebe, P H; Burczynski, J; Youngbluth, M J

    1988-07-15

    High-density demersal layers of krill have been detected in the submarine canyons off Georges Bank by means of a high-frequency, dual-beam bioacoustical technique. Krill densities in these demersal layers were observed to be two to three orders of magnitude greater than the highest densities observed in water-column scattering layers. Such abundances may help explain the unusually high squid and demersal fish production estimates attributed to the Georges Bank ecosystem. PMID:17734865

  18. Acoustical Detection of High-Density Krill Demersal Layers in the Submarine Canyons off Georges Bank.

    PubMed

    Greene, C H; Wiebe, P H; Burczynski, J; Youngbluth, M J

    1988-07-15

    High-density demersal layers of krill have been detected in the submarine canyons off Georges Bank by means of a high-frequency, dual-beam bioacoustical technique. Krill densities in these demersal layers were observed to be two to three orders of magnitude greater than the highest densities observed in water-column scattering layers. Such abundances may help explain the unusually high squid and demersal fish production estimates attributed to the Georges Bank ecosystem.

  19. Beta Diversity of Demersal Fish Assemblages in the North-Eastern Pacific: Interactions of Latitude and Depth

    PubMed Central

    Anderson, Marti J.; Tolimieri, Nick; Millar, Russell B.

    2013-01-01

    Knowledge of broad-scale global patterns in beta diversity (i.e., variation or turnover in identities of species) for marine systems is in its infancy. We analysed the beta diversity of groundfish communities along the North American Pacific coast, from trawl data spanning 32.57°N to 48.52°N and 51 m to 1200 m depth. Analyses were based on both the Jaccard measure and the probabilistic Raup-Crick measure, which accounts for variation in alpha diversity. Overall, beta diversity decreased with depth, and this effect was strongest at lower latitudes. Superimposed on this trend were peaks in beta diversity at around 400–600 m and also around 1000–1200 m, which may indicate high turnover around the edges of the oxygen minimum zone. Beta diversity was also observed to decrease with latitude, but this effect was only observed in shallower waters (<200 m); latitudinal turnover began to disappear at depths >800 m. At shallower depths (<200 m), peaks in latitudinal turnover were observed at ∼43°N, 39°N, 35°N and 31°N, which corresponded well with several classically observed oceanographic boundaries. Turnover with depth was stronger than latitudinal turnover, and is likely to reflect strong environmental filtering over relatively short distances. Patterns in beta diversity, including latitude-by-depth interactions, should be integrated with other biodiversity measures in ecosystem-based management and conservation of groundfish communities. PMID:23526960

  20. Beta diversity of demersal fish assemblages in the North-Eastern Pacific: interactions of latitude and depth.

    PubMed

    Anderson, Marti J; Tolimieri, Nick; Millar, Russell B

    2013-01-01

    Knowledge of broad-scale global patterns in beta diversity (i.e., variation or turnover in identities of species) for marine systems is in its infancy. We analysed the beta diversity of groundfish communities along the North American Pacific coast, from trawl data spanning 32.57°N to 48.52°N and 51 m to 1200 m depth. Analyses were based on both the Jaccard measure and the probabilistic Raup-Crick measure, which accounts for variation in alpha diversity. Overall, beta diversity decreased with depth, and this effect was strongest at lower latitudes. Superimposed on this trend were peaks in beta diversity at around 400-600 m and also around 1000-1200 m, which may indicate high turnover around the edges of the oxygen minimum zone. Beta diversity was also observed to decrease with latitude, but this effect was only observed in shallower waters (<200 m); latitudinal turnover began to disappear at depths >800 m. At shallower depths (<200 m), peaks in latitudinal turnover were observed at ∼43°N, 39°N, 35°N and 31°N, which corresponded well with several classically observed oceanographic boundaries. Turnover with depth was stronger than latitudinal turnover, and is likely to reflect strong environmental filtering over relatively short distances. Patterns in beta diversity, including latitude-by-depth interactions, should be integrated with other biodiversity measures in ecosystem-based management and conservation of groundfish communities.

  1. The taste system of small fish species.

    PubMed

    Okada, Shinji

    2015-01-01

    Small fish species such as the zebrafish (Danio rerio) and medaka fish (Oryzias latipes) are advantageous animal models and have been used as model organisms in many research areas. However, they have not been utilized for studying the taste system, primarily because of a dearth of molecular biological knowledge. Quantitative methods for analyzing the taste preferences of fish species have also been lacking. Recent progress of the fish genome project has enabled the elucidation of the molecular mechanisms of taste sensation. Taste receptors and a number of signal transduction molecules have been identified. Additionally, the development of quantitative methods of feeding using fluorescently labeled artificial foods has demonstrated taste preferences in small fish species. Comparisons between these results in fish and reports on mammals have proposed a general logic and evolution of vertebrate taste systems. Analysis on the transsynaptic tracer-expressing transgenic medaka fish also suggests the usefulness of small fish in the research of neural circuits for taste.

  2. [Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico].

    PubMed

    López-Martínez, Juana; Herrera-Valdivia, Eloisa; Rodríguez-Romero, Jesús; Hernández-Vázquez, Sergio

    2010-09-01

    Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico. The shrimp fishery in the Gulf of California is one the most important activities of revenue and employment for communities. Nevertheless, this fishery has also created a large bycatch problem, principally fish. To asses this issue, a group of observers were placed on board the industrial shrimp fleet and evaluated the Eastern side of the Gulf during 2004 and 2005. Studies consisted on 20kg samples of the capture for each trawl, and made possible a systematic list of species for this geographic area. Fish represented 70% of the capture. A total of 51 101 fish were collected, belonging to two classes, 20 orders, 65 families, 127 genera, and 241 species. The order Perciformes was the most diverse with 31 families, 78 genera, and 158 species. The best represented families by number of species were: Sciaenidae (34) and Paralichthyidae (18) and Haemulidae and Carangidae (16 each). The best represented genera in number of species were Symphurus (nine) and Diplectrum and Cynoscion (six); other important genera were Larimus and Porichthys with five species each. The best represented species in number were Syacium ovale, Pseudupeneus grandisquamis, Haemulopsis nitidos, Diplectrum pacificum, Synodus scituliceps, Balistes polylepis, Eucinostomus currani, Eucinostomus gracilis, Porichthys analis, Chloroscombrus orqueta, Selene peruviana, Orthopristis reddingi, Etropus crossotus, Scorpaena sonorae and Urobatis halleri. The number of recorded species is notably high, compared with demersal fauna of other areas of the Mexican Pacific, such as Gulf of Tehuantepec (178), Nayarit, Michoacán, Guerrero (174, 120 and 166), Jalisco and Colima (161 species), and those of the Western coast of the Baja California Peninsula (220 species).

  3. The deepwater demersal ichthyofauna of the western Coral Sea.

    PubMed

    Last, Peter R; Pogonoski, John J; Gledhill, Daniel C; White, William T; Walker, Chris J

    2014-01-01

    The highly diverse deepwater demersal ichthyofauna of the western Coral Sea was first systematically surveyed in two exploratory voyages in 1985 and 1986, and these fish assemblages have not been investigated at the same level since. Only recently have catch data and specimens, obtained from these first voyages almost 3 decades ago, been rigorously investigated and analysed. Some 393 species of fishes from 125 families were collected during the 1985 voyage which surveyed the northeastern Australian continental margin, and the Saumarez and Queensland Plateaus. A checklist of the species caught is provided. Levels of endemicity of deepwater fishes in the western Coral Sea are very high with about 50% of well-studied groups, such as sharks and rays, confined to this relatively small geographic region. A very high proportion of species caught during this voyage were either undescribed (78 species or 20%) or new Australian records (96 species or 24%) at the time of the survey. Another 68 species (17%) are the subject of further taxonomic investigation or are currently undergoing formal description. The fauna exhibits some intraregional differences in structure. Biogeographically informative fishes such as skates appear to be cryptically partitioned within the region, differing in composition to other Australian regions and those of French territories to the east. Strong depth-related partitioning of the fauna is also evident, and its structure follows zonation patterns observed across the wider Australian region. Given the high level of micro-endemicity and regional uniqueness of the fauna, there is a compelling argument for the existence of a faunal gyre in the Coral Sea.  New gap-filling surveys are needed to better define the structure of this fauna and determine its distribution. PMID:25543931

  4. An early footprint of fisheries: Changes for a demersal fish assemblage in the German Bight from 1902-1932 to 1991-2009

    NASA Astrophysics Data System (ADS)

    Fock, Heino O.; Kloppmann, Matthias H. F.; Probst, Wolfgang N.

    2014-01-01

    Groundfish survey data from the German Bight from 1902-08, 1919-23, and 1930-1932 and ICES International Bottom Trawl Survey (IBTS) quarter 3 data from 1991 to 2009 were analysed with respect to species frequencies, maximum length, trends in catch-per-unit-effort, species richness parameters (SNR) and presence of large fish (Φ40), the latter defined as average presence of species per haul with specimens larger than 40 cm given. Four different periods are distinguished: (a) before 1914 with medium commercial CPUE and low landings, Φ40 ≈ 2, high abundance in elasmobranchs and SNR conditions indicating highly diverse assemblages, (b) conditions immediately after 1918 with higher commercial CPUE, recovering landings, Φ40 at > 4 in 1919, and SNR conditions indicating highly diverse assemblages, (c) conditions from 1920 to the early 1930's with decreasing commercial CPUE, increased landings, decreasing Φ40, SNR conditions similar to later years indicating less diverse assemblages, and a decrease in elasmobranchs. In the IBTS series (d), Φ40 remains low indicating an increased rarity of large specimens, and SNR characteristics are similar to the third period. Dab, whiting and grey gurnard have increased considerably in the IBTS series as compared to the historic data. Φ40 is suggested an alternative indicator reflecting community functional diversity when weight based indicators cannot be applied.

  5. Using multiple gears to assess acoustic detectability and biomass of fish species in lake superior

    USGS Publications Warehouse

    Yule, D.L.; Adams, J.V.; Stockwell, J.D.; Gorman, O.T.

    2007-01-01

    Recent predator demand and prey supply studies suggest that an annual daytime bottom trawl survey of Lake Superior underestimates prey fish biomass. A multiple-gear (acoustics, bottom trawl, and midwater trawl) nighttime survey has been recommended, but before abandoning a long-term daytime survey the effectiveness of night sampling of important prey species must be verified. We sampled three bottom depths (30, 60, and 120 m) at a Lake Superior site where the fish community included all commercially and ecologically important species. Day and night samples were collected within 48 h at all depths during eight different periods (one new and one full moon period during both early summer and late summer to early fall over 2 years). Biomass of demersal and benthic species was higher in night bottom trawl samples than in day bottom trawl samples. Night acoustic collections showed that pelagic fish typically occupied water cooler than 15°C and light levels less than 0.001 lx. Using biomass in night bottom trawls and acoustic biomass above the bottom trawl path, we calculated an index of acoustic detectability for each species. Ciscoes Coregonus artedi, kiyis C. kiyi, and rainbow smeltOsmerus mordax left the bottom at night, whereas bloaters C. hoyi stayed nearer the bottom. We compared the biomass of important prey species estimated with two survey types: day bottom trawls and night estimates of the entire water column (bottom trawl biomass plus acoustic biomass). The biomass of large ciscoes (>200 mm) was significantly greater when measured at night than when measured during daylight, but the differences for other sizes of important species did not vary significantly by survey type. Nighttime of late summer is a period when conditions for biomass estimation are largely invariant, and all important prey species can be sampled using a multiple-gear approach.

  6. SMART: A Spatially Explicit Bio-Economic Model for Assessing and Managing Demersal Fisheries, with an Application to Italian Trawlers in the Strait of Sicily

    PubMed Central

    Russo, Tommaso; Parisi, Antonio; Garofalo, Germana; Gristina, Michele; Cataudella, Stefano; Fiorentino, Fabio

    2014-01-01

    Management of catches, effort and exploitation pattern are considered the most effective measures to control fishing mortality and ultimately ensure productivity and sustainability of fisheries. Despite the growing concerns about the spatial dimension of fisheries, the distribution of resources and fishing effort in space is seldom considered in assessment and management processes. Here we propose SMART (Spatial MAnagement of demersal Resources for Trawl fisheries), a tool for assessing bio-economic feedback in different management scenarios. SMART combines information from different tasks gathered within the European Data Collection Framework on fisheries and is composed of: 1) spatial models of fishing effort, environmental characteristics and distribution of demersal resources; 2) an Artificial Neural Network which captures the relationships among these aspects in a spatially explicit way and uses them to predict resources abundances; 3) a deterministic module which analyzes the size structure of catches and the associated revenues, according to different spatially-based management scenarios. SMART is applied to demersal fishery in the Strait of Sicily, one of the most productive fisheries of the Mediterranean Sea. Three of the main target species are used as proxies for the whole range exploited by trawlers. After training, SMART is used to evaluate different management scenarios, including spatial closures, using a simulation approach that mimics the recent exploitation patterns. Results evidence good model performance, with a noteworthy coherence and reliability of outputs for the different components. Among others, the main finding is that a partial improvement in resource conditions can be achieved by means of nursery closures, even if the overall fishing effort in the area remains stable. Accordingly, a series of strategically designed areas of trawling closures could significantly improve the resource conditions of demersal fisheries in the Strait of

  7. SMART: a spatially explicit bio-economic model for assessing and managing demersal fisheries, with an application to italian trawlers in the strait of sicily.

    PubMed

    Russo, Tommaso; Parisi, Antonio; Garofalo, Germana; Gristina, Michele; Cataudella, Stefano; Fiorentino, Fabio

    2014-01-01

    Management of catches, effort and exploitation pattern are considered the most effective measures to control fishing mortality and ultimately ensure productivity and sustainability of fisheries. Despite the growing concerns about the spatial dimension of fisheries, the distribution of resources and fishing effort in space is seldom considered in assessment and management processes. Here we propose SMART (Spatial MAnagement of demersal Resources for Trawl fisheries), a tool for assessing bio-economic feedback in different management scenarios. SMART combines information from different tasks gathered within the European Data Collection Framework on fisheries and is composed of: 1) spatial models of fishing effort, environmental characteristics and distribution of demersal resources; 2) an Artificial Neural Network which captures the relationships among these aspects in a spatially explicit way and uses them to predict resources abundances; 3) a deterministic module which analyzes the size structure of catches and the associated revenues, according to different spatially-based management scenarios. SMART is applied to demersal fishery in the Strait of Sicily, one of the most productive fisheries of the Mediterranean Sea. Three of the main target species are used as proxies for the whole range exploited by trawlers. After training, SMART is used to evaluate different management scenarios, including spatial closures, using a simulation approach that mimics the recent exploitation patterns. Results evidence good model performance, with a noteworthy coherence and reliability of outputs for the different components. Among others, the main finding is that a partial improvement in resource conditions can be achieved by means of nursery closures, even if the overall fishing effort in the area remains stable. Accordingly, a series of strategically designed areas of trawling closures could significantly improve the resource conditions of demersal fisheries in the Strait of

  8. Exposure to hydrocarbons 10 years after the Exxon Valdez oil spill: evidence from cytochrome P4501A expression and biliary FACs in nearshore demersal fishes.

    PubMed

    Jewett, Stephen C; Dean, Thomas A; Woodin, Bruce R; Hoberg, Max K; Stegeman, John J

    2002-01-01

    Three biomarkers of hydrocarbon exposure, CYP1A in liver vascular endothelium, liver ethoxyresorufin O-deethylase (EROD), and biliary fluorescent aromatic compounds (FACs), were examined in the nearshore fishes, masked greenling (Hexagrammos octogrammus) and crescent gunnel (Pholis laeta), collected in Prince William Sound, Alaska, 7-10 years after the Exxon Valdez oil spill (EVOS). All biomarkers were elevated in fish collected from sites originally oiled, in comparison to fish from unoiled sites. In 1998, endothelial CYP1A in masked greenling from sites that were heavily oiled in 1989 was significantly higher than in fish collected outside the spill trajectory. In 1999, fishes collected from sites adjacent to intertidal mussel beds containing lingering Exxon Valdez oil had elevated endothelial CYP1A and EROD, and high concentrations of biliary FACs. Fishes from sites near unoiled mussel beds, but within the original spill trajectory, also showed evidence of hydrocarbon exposure, although there were no correlations between sediment petroleum hydrocarbon and any of the biomarkers. Our data show that 10 years after the spill, nearshore fishes within the original spill zone were still exposed to residual EVOS hydrocarbons.

  9. Exposure to hydrocarbons 10 years after the Exxon Valdez oil spill: evidence from cytochrome P4501A expression and biliary FACs in nearshore demersal fishes.

    PubMed

    Jewett, Stephen C; Dean, Thomas A; Woodin, Bruce R; Hoberg, Max K; Stegeman, John J

    2002-01-01

    Three biomarkers of hydrocarbon exposure, CYP1A in liver vascular endothelium, liver ethoxyresorufin O-deethylase (EROD), and biliary fluorescent aromatic compounds (FACs), were examined in the nearshore fishes, masked greenling (Hexagrammos octogrammus) and crescent gunnel (Pholis laeta), collected in Prince William Sound, Alaska, 7-10 years after the Exxon Valdez oil spill (EVOS). All biomarkers were elevated in fish collected from sites originally oiled, in comparison to fish from unoiled sites. In 1998, endothelial CYP1A in masked greenling from sites that were heavily oiled in 1989 was significantly higher than in fish collected outside the spill trajectory. In 1999, fishes collected from sites adjacent to intertidal mussel beds containing lingering Exxon Valdez oil had elevated endothelial CYP1A and EROD, and high concentrations of biliary FACs. Fishes from sites near unoiled mussel beds, but within the original spill trajectory, also showed evidence of hydrocarbon exposure, although there were no correlations between sediment petroleum hydrocarbon and any of the biomarkers. Our data show that 10 years after the spill, nearshore fishes within the original spill zone were still exposed to residual EVOS hydrocarbons. PMID:12148943

  10. Fishery Discards: Factors Affecting Their Variability within a Demersal Trawl Fishery

    PubMed Central

    Feekings, Jordan; Bartolino, Valerio; Madsen, Niels; Catchpole, Tom

    2012-01-01

    Discards represent one of the most important issues within current commercial fishing. It occurs for a range of reasons and is influenced by an even more complex array of factors. We address this issue by examining the data collected within the Danish discard observer program and describe the factors that influence discarding within the Danish Kattegat demersal fleet over the period 1997 to 2008. Generalised additive models were used to assess how discards of the 3 main target species, Norway lobster, cod and plaice, and their subcomponents (under and over minimum landings size) are influenced by important factors and their potential relevance to management. Our results show that discards are influenced by a range of different factors that are different for each species and portion of discards. We argue that knowledge about the factors influential to discarding and their use in relation to potential mitigation measures are essential for future fisheries management strategies. PMID:22558463

  11. ABC transporters in fish species: a review

    PubMed Central

    Ferreira, Marta; Costa, Joana; Reis-Henriques, Maria A.

    2014-01-01

    ATP-binding cassette (ABC) proteins were first recognized for their role in multidrug resistance (MDR) in chemotherapeutic treatments, which is a major impediment for the successful treatment of many forms of malignant tumors in humans. These proteins, highly conserved throughout vertebrate species, were later related to cellular detoxification and accounted as responsible for protecting aquatic organisms from xenobiotic insults in the so-called multixenobiotic resistance mechanism (MXR). In recent years, research on these proteins in aquatic species has highlighted their importance in the detoxification mechanisms in fish thus it is necessary to continue these studies. Several transporters have been pointed out as relevant in the ecotoxicological context associated to the transport of xenobiotics, such as P-glycoproteins (Pgps), multidrug-resistance-associated proteins (MRPs 1-5) and breast cancer resistance associated protein (BCRP). In mammals, several nuclear receptors have been identified as mediators of phase I and II metabolizing enzymes and ABC transporters. In aquatic species, knowledge on co-regulation of the detoxification mechanism is scarce and needs to be addressed. The interaction of emergent contaminants that can act as chemosensitizers, with ABC transporters in aquatic organisms can compromise detoxification processes and have population effects and should be studied in more detail. This review intends to summarize the recent advances in research on MXR mechanisms in fish species, focusing in (1) regulation and functioning of ABC proteins; (2) cooperation with phase I and II biotransformation enzymes; and (3) ecotoxicological relevance and information on emergent pollutants with ability to modulate ABC transporters expression and activity. Several lines of evidence are clearly suggesting the important role of these transporters in detoxification mechanisms and must be further investigated in fish to underlay the mechanism to consider their use as

  12. Fish Ecology and Evolution in the World's Oxygen Minimum Zones and Implications of Ocean Deoxygenation.

    PubMed

    Gallo, N D; Levin, L A

    2016-01-01

    Oxygen minimum zones (OMZs) and oxygen limited zones (OLZs) are important oceanographic features in the Pacific, Atlantic, and Indian Ocean, and are characterized by hypoxic conditions that are physiologically challenging for demersal fish. Thickness, depth of the upper boundary, minimum oxygen levels, local temperatures, and diurnal, seasonal, and interannual oxycline variability differ regionally, with the thickest and shallowest OMZs occurring in the subtropics and tropics. Although most fish are not hypoxia-tolerant, at least 77 demersal fish species from 16 orders have evolved physiological, behavioural, and morphological adaptations that allow them to live under the severely hypoxic, hypercapnic, and at times sulphidic conditions found in OMZs. Tolerance to OMZ conditions has evolved multiple times in multiple groups with no single fish family or genus exploiting all OMZs globally. Severely hypoxic conditions in OMZs lead to decreased demersal fish diversity, but fish density trends are variable and dependent on region-specific thresholds. Some OMZ-adapted fish species are more hypoxia-tolerant than most megafaunal invertebrates and are present even when most invertebrates are excluded. Expansions and contractions of OMZs in the past have affected fish evolution and diversity. Current patterns of ocean warming are leading to ocean deoxygenation, causing the expansion and shoaling of OMZs, which is expected to decrease demersal fish diversity and alter trophic pathways on affected margins. Habitat compression is expected for hypoxia-intolerant species, causing increased susceptibility to overfishing for fisheries species. Demersal fisheries are likely to be negatively impacted overall by the expansion of OMZs in a warming world.

  13. Fish Ecology and Evolution in the World's Oxygen Minimum Zones and Implications of Ocean Deoxygenation.

    PubMed

    Gallo, N D; Levin, L A

    2016-01-01

    Oxygen minimum zones (OMZs) and oxygen limited zones (OLZs) are important oceanographic features in the Pacific, Atlantic, and Indian Ocean, and are characterized by hypoxic conditions that are physiologically challenging for demersal fish. Thickness, depth of the upper boundary, minimum oxygen levels, local temperatures, and diurnal, seasonal, and interannual oxycline variability differ regionally, with the thickest and shallowest OMZs occurring in the subtropics and tropics. Although most fish are not hypoxia-tolerant, at least 77 demersal fish species from 16 orders have evolved physiological, behavioural, and morphological adaptations that allow them to live under the severely hypoxic, hypercapnic, and at times sulphidic conditions found in OMZs. Tolerance to OMZ conditions has evolved multiple times in multiple groups with no single fish family or genus exploiting all OMZs globally. Severely hypoxic conditions in OMZs lead to decreased demersal fish diversity, but fish density trends are variable and dependent on region-specific thresholds. Some OMZ-adapted fish species are more hypoxia-tolerant than most megafaunal invertebrates and are present even when most invertebrates are excluded. Expansions and contractions of OMZs in the past have affected fish evolution and diversity. Current patterns of ocean warming are leading to ocean deoxygenation, causing the expansion and shoaling of OMZs, which is expected to decrease demersal fish diversity and alter trophic pathways on affected margins. Habitat compression is expected for hypoxia-intolerant species, causing increased susceptibility to overfishing for fisheries species. Demersal fisheries are likely to be negatively impacted overall by the expansion of OMZs in a warming world. PMID:27573051

  14. Levels of chemicals in two fish species from four Italian fishing areas.

    PubMed

    Guerranti, Cristiana; Grazioli, Eleonora; Focardi, Silvano; Renzi, Monia; Perra, Guido

    2016-10-15

    This paper reports the results of an assessment of contamination by polychlorinated biphenyls and polycyclic aromatic hydrocarbons in two demersal species of commercial importance. The organisms considered were Mullus barbatus and Engraulis encrasicolus from three marine areas off the Italian coasts: North and South Adriatic Sea and North Tyrrhenian Sea. The instrumental analyzes have revealed, in many samples examined, the presence of most of PCB congeners and 5 of the 16 PAHs considered. Organisms caught in the waters of Apulia have greater contamination values, while the samples from Tuscany showed the lowest ones, results probably referable to the environmental quality differences between the areas of origin, at least for PAHs, since the sampling areas are represented respectively by areas with presence of oil extraction plant (Adriatic), and by an area subject to environmental protection. PMID:27423440

  15. Phylogeny of Fish-Infecting Calyptospora species (Apicomplexa: Eimeriorina)

    EPA Science Inventory

    There are numerous species of apicomplexans that infect poikilothermic vertebrates such as fishes, and possess unique morphological features that provide insight into the evolution of this important phylum of parasites. Here the relationship of the fish-infecting Calyptospora spe...

  16. Integrating Anisakis spp. parasites data and host genetic structure in the frame of a holistic approach for stock identification of selected Mediterranean Sea fish species.

    PubMed

    Mattiucci, S; Cimmaruta, R; Cipriani, P; Abaunza, P; Bellisario, B; Nascetti, G

    2015-01-01

    The unique environment of the Mediterranean Sea makes fish stock assessment a major challenge. Stock identification of Mediterranean fisheries has been based mostly from data on biology, morphometrics, artificial tags, otolith shape and fish genetics, with less effort on the use of parasites as biomarkers. Here we use some case studies comparing Mediterranean vs Atlantic fish stocks in a multidisciplinary framework. The generalized Procrustes Rotation (PR) was used to assess the association between host genetics and larval Anisakis spp. datasets on demersal (hake) and pelagic (horse mackerel, swordfish) species. When discordant results emerged, they were due to the different features of the data. While fish population genetics can detect changes over an evolutionary timescale, providing indications on the cohesive action of gene flow, parasites are more suitable biomarkers when considering fish stocks over smaller temporal and spatial scales, hence giving information of fish movements over their lifespan. Future studies on the phylogeographic analysis of parasites suitable as biomarkers, and that of their fish host, performed on the same genes, will represent a further tool to be included in multidisciplinary studies on fish stock structure.

  17. Retrospective analysis: bile hydrocarbons and histopathology of demersal rockfish in Prince William Sound, Alaska, after the Exxon Valdez oil spill.

    PubMed

    Marty, Gary D; Hoffmann, Andy; Okihiro, Mark S; Hepler, Kelly; Hanes, David

    2003-12-01

    Demersal rockfish are the only fish species that have been found dead in significant numbers after major oil spills, but the link between oil exposure and effect has not been well established. After the 1989 Exxon Valdez oil spill in Prince William Sound, Alaska, several species of rockfish (Sebastes spp.) from oiled and reference sites were analyzed for hydrocarbon metabolites in bile (1989-1991) and for microscopic lesions (1990 and 1991). Biliary hydrocarbons consistent with exposure to Exxon Valdez oil were elevated in 1989, but not in 1990 or 1991. Significant microscopic findings included pigmented macrophage aggregates and hepatic megalocytosis, fibrosis, and lipid accumulation. Site differences in microscopic findings were significant with respect to previous oil exposure in 1991 (P=0.038), but not in 1990. However, differences in microscopic findings were highly significant with respect to age and species in both years (P<0.001). We conclude that demersal rockfish were exposed to Exxon Valdez oil in 1989, but differences in microscopic changes in 1990 and 1991 were related more to age and species differences than to previous oil exposure. PMID:12927739

  18. Retrospective analysis: bile hydrocarbons and histopathology of demersal rockfish in Prince William Sound, Alaska, after the Exxon Valdez oil spill.

    PubMed

    Marty, Gary D; Hoffmann, Andy; Okihiro, Mark S; Hepler, Kelly; Hanes, David

    2003-12-01

    Demersal rockfish are the only fish species that have been found dead in significant numbers after major oil spills, but the link between oil exposure and effect has not been well established. After the 1989 Exxon Valdez oil spill in Prince William Sound, Alaska, several species of rockfish (Sebastes spp.) from oiled and reference sites were analyzed for hydrocarbon metabolites in bile (1989-1991) and for microscopic lesions (1990 and 1991). Biliary hydrocarbons consistent with exposure to Exxon Valdez oil were elevated in 1989, but not in 1990 or 1991. Significant microscopic findings included pigmented macrophage aggregates and hepatic megalocytosis, fibrosis, and lipid accumulation. Site differences in microscopic findings were significant with respect to previous oil exposure in 1991 (P=0.038), but not in 1990. However, differences in microscopic findings were highly significant with respect to age and species in both years (P<0.001). We conclude that demersal rockfish were exposed to Exxon Valdez oil in 1989, but differences in microscopic changes in 1990 and 1991 were related more to age and species differences than to previous oil exposure.

  19. DNA barcode-based molecular identification system for fish species.

    PubMed

    Kim, Sungmin; Eo, Hae-Seok; Koo, Hyeyoung; Choi, Jun-Kil; Kim, Won

    2010-12-01

    In this study, we applied DNA barcoding to identify species using short DNA sequence analysis. We examined the utility of DNA barcoding by identifying 53 Korean freshwater fish species, 233 other freshwater fish species, and 1339 saltwater fish species. We successfully developed a web-based molecular identification system for fish (MISF) using a profile hidden Markov model. MISF facilitates efficient and reliable species identification, overcoming the limitations of conventional taxonomic approaches. MISF is freely accessible at http://bioinfosys.snu.ac.kr:8080/MISF/misf.jsp .

  20. Species-specific mercury bioaccumulation in a diverse fish community.

    PubMed

    Donald, David B; Wissel, Björn; Anas, M U Mohamed

    2015-12-01

    Mercury bioaccumulation models developed for fish provide insight into the sources and transfer of Hg within ecosystems. Mercury concentrations were assessed for 16 fish species of the western reach of Lake Diefenbaker, Saskatchewan, Canada. For top predators (northern pike, Esox Lucius; walleye, Sander vitreum), Hg concentrations were positively correlated to δ(15)N, and δ(15)N to fish age, suggesting that throughout life these fish fed on organisms with increasingly higher trophic values and Hg concentrations. However, fish mass and/or age were the principal parameters related to Hg concentrations for most species. For 9 common species combined, individual variation in Hg concentration was explained in declining order of importance by fish mass, trophic position (δ(15)N), and fish age. Delta (15)N value was not the leading variable related to Hg concentration for the assemblage, probably because of the longevity of lower--trophic-level species (3 species ≥ 20 yr), substantial overlap in Hg concentration and δ(15)N values for large-bodied fish up to 3000 g, and complex relationships between Hg concentration and δ(15)N among species. These results suggest that the quantity of food (and Hg) consumed each year and converted to fish mass, the quantity of Hg bioaccumulated over years and decades, and trophic position were significant determinants of Hg concentration in Lake Diefenbaker fish.

  1. Feeding ecology of two demersal opportunistic predators coexisting in the northwestern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    López, Nieves; Navarro, Joan; Barría, Claudio; Albo-Puigserver, Marta; Coll, Marta; Palomera, Isabel

    2016-06-01

    The study of the feeding ecology of marine organisms is crucial to understanding their ecological roles and advancing our knowledge of marine ecosystem functioning. The aim of this study was to analyse the trophic ecology of two demersal predator species, black anglerfish (Lophius budegassa) and white anglerfish (L. piscatorius), in the northwestern Mediterranean Sea. Both species are important in the study area due to their high abundance and economic value, but information about their feeding behaviour is scarce. Here, we described the diet composition and ecological role of these two species, investigating whether trophic segregation exists between them and amongst fish of different sizes. In addition, by using experimental survey data we described the spatial distribution of both species to help us interpret trophic behaviour patterns. We gathered samples of two different sizes (small individuals of a total length <30 cm and large individuals ≥30 cm) of both species and combined stomach content analyses (SCA) and stable isotope analyses (SIA) of nitrogen and carbon with isotopic mixing models. Our results revealed that both anglerfish species are opportunistic predators, showing a diet composed mainly of fishes and, to a lesser extent, of crustaceans, with a small proportion of cephalopods, gastropods, bivalves and echinoderms. We found trophic segregation between the two species and the two sizes, indicating that they feed on different prey, in line with differences in their spatial distribution within the study area. This partial partition of food resources could also be explained by the differences in rhythms of activity that were reported in previous studies. In addition, although both species occupied a high position within the food web, our results showed that white anglerfish individuals and the large-sized fish of both species held higher trophic positions. This study demonstrates the usefulness of complementary approaches for trophic studies and

  2. Tissue specific metal characterization of selected fish species in Pakistan.

    PubMed

    Ahmed, Mukhtiar; Ahmad, Taufiq; Liaquat, Muhammad; Abbasi, Kashif Sarfraz; Farid, Ibrahim Bayoumi Abdel; Jahangir, Muhammad

    2016-04-01

    Concentration of various metals, i.e., zinc (Zn), copper (Cu), lead (Pb), nickel (Ni), iron (Fe), manganese (Mn), chromium (Cr), and silver (Ag), was evaluated in five indigenous fish species (namely, silver carp, common carp, mahseer, thela fish, and rainbow trout), by using atomic absorption spectrophotometer. It is proved from this study that, overall, mahseer and rainbow trout had high amount of zinc, whereas thela fish and silver carp had high concentration of copper, chromium, silver, nickel, and lead, while common carp had highest amount of iron contents. Furthermore, a tissue-specific discrimination among various fish species was observed, where higher metal concentrations were noticed in fish liver, with decreasing concentration in other organs like skin, gills, and finally the least contents in fish muscle. Multivariate data analysis showed not only a variation in heavy metals among the tissues but also discrimination among the selected fish species. PMID:26951449

  3. Tissue specific metal characterization of selected fish species in Pakistan.

    PubMed

    Ahmed, Mukhtiar; Ahmad, Taufiq; Liaquat, Muhammad; Abbasi, Kashif Sarfraz; Farid, Ibrahim Bayoumi Abdel; Jahangir, Muhammad

    2016-04-01

    Concentration of various metals, i.e., zinc (Zn), copper (Cu), lead (Pb), nickel (Ni), iron (Fe), manganese (Mn), chromium (Cr), and silver (Ag), was evaluated in five indigenous fish species (namely, silver carp, common carp, mahseer, thela fish, and rainbow trout), by using atomic absorption spectrophotometer. It is proved from this study that, overall, mahseer and rainbow trout had high amount of zinc, whereas thela fish and silver carp had high concentration of copper, chromium, silver, nickel, and lead, while common carp had highest amount of iron contents. Furthermore, a tissue-specific discrimination among various fish species was observed, where higher metal concentrations were noticed in fish liver, with decreasing concentration in other organs like skin, gills, and finally the least contents in fish muscle. Multivariate data analysis showed not only a variation in heavy metals among the tissues but also discrimination among the selected fish species.

  4. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accord...

  5. Identification of novel Cryptosporidium species in aquarium fish.

    PubMed

    Zanguee, N; Lymbery, J A; Lau, J; Suzuki, A; Yang, R; Ng, J; Ryan, U

    2010-11-24

    Little is known about the prevalence and genotypes of Cryptosporidium in fish. The present study investigated the prevalence of Cryptosporidium species in 200 aquarium fish of 39 different species in Western Australia by PCR amplification at the 18S rRNA locus. A total of 21 positives were detected by PCR (10.5% prevalence) from 13 different species of fish. Nineteen of these isolates were successfully sequenced. Of these, 12 were similar or identical to previously described species/genotypes of Cryptosporidium, while the remaining seven isolates appeared to represent three novel species.

  6. A phylogenetic analysis of egg size, clutch size, spawning mode, adult body size, and latitude in reef fishes

    NASA Astrophysics Data System (ADS)

    Kasimatis, Katja; Riginos, Cynthia

    2016-06-01

    Theoretical treatments of egg size in fishes suggest that constraints on reproductive output should create trade-offs between the size and number of eggs produced per spawn. For marine reef fishes, the observation of distinct reproductive care strategies (demersal guarding, egg scattering, and pelagic spawning) has additionally prompted speculation that these strategies reflect alternative fitness optima with selection on egg size differing by reproductive mode and perhaps latitude. Here, we aggregate data from 278 reef fish species and test whether clutch size, reproductive care, adult body size, and latitudinal bands (i.e., tropical, subtropical, and temperate) predict egg size, using a statistically unified framework that accounts for phylogenetic correlations among traits. We find no inverse relationship between species egg size and clutch size, but rather that egg size differs by reproductive mode (mean volume for demersal eggs = 1.22 mm3, scattered eggs = 0.18 mm3, pelagic eggs = 0.52 mm3) and that clutch size is strongly correlated with adult body size. Larger eggs were found in temperate species compared with tropical species in both demersal guarders and pelagic spawners, but this difference was not strong when accounting for phylogenetic correlations, suggesting that differences in species composition underlies regional differences in egg size. In summary, demersal guarders are generally small fishes with small clutch sizes that produce large eggs. Pelagic spawners and egg scatterers are variable in adult and clutch size. Although pelagic spawned eggs are variable in size, those of scatterers are consistently small.

  7. Mobile demersal megafauna at artificial structures in the German Bight - Likely effects of offshore wind farm development

    NASA Astrophysics Data System (ADS)

    Krone, R.; Gutow, L.; Brey, T.; Dannheim, J.; Schröder, A.

    2013-07-01

    Within the next few decades, large underwater structures of thousands of wind turbines in the northern European shelf seas will substantially increase the amount of habitat available for mobile demersal megafauna. As a first indication of the possible effects of this large scale habitat creation on faunal stocks settling on hard substrata, we compared selected taxa of the mobile demersal megafauna (decapods and fish) associated with the foundation of an offshore research platform (a wind-power foundation equivalent) with those of five shipwrecks and different areas of soft bottoms in the southern German Bight, North Sea. When comparing the amount of approximately 5000 planned wind-power foundations (covering 5.1 × 106 m2 of bottom area) with the existing number of at least 1000 shipwrecks (covering 1.2 × 106 m2 of bottom area), it becomes clear that the southern North Sea will provide about 4.3 times more available artificial hard substratum habitats than currently available. With regard to the fauna found on shipwrecks, on soft substrata and on the investigated wind-power foundation, we predict that the amount of added hard substrata will allow the stocks of substrata-limited mobile demersal hard bottom species to increase by 25-165% in that area. The fauna found at the offshore platform foundations is very similar to that at shipwrecks. Megafauna abundances at the foundations, however, are lower compared to those at the highly fractured wrecks and are irregularly scattered over the foundations. The upper regions of the platform construction (5 and 15 m depth) were only sparsely colonized by mobile fauna, the anchorages, however, more densely. The faunal assemblages from the shipwrecks and the foundations, respectively, as well as from the soft bottoms clearly differed from each other. We predict that new wind-power foundations will support the spread of hard bottom fauna into soft bottom areas with low wreck densities.

  8. Genetic calibration of species diversity among North America's freshwater fishes.

    PubMed

    April, Julien; Mayden, Richard L; Hanner, Robert H; Bernatchez, Louis

    2011-06-28

    Freshwater ecosystems are being heavily exploited and degraded by human activities all over the world, including in North America, where fishes and fisheries are strongly affected. Despite centuries of taxonomic inquiry, problems inherent to species identification continue to hamper the conservation of North American freshwater fishes. Indeed, nearly 10% of species diversity is thought to remain undescribed. To provide an independent calibration of taxonomic uncertainty and to establish a more accessible molecular identification key for its application, we generated a standard reference library of mtDNA sequences (DNA barcodes) derived from expert-identified museum specimens for 752 North American freshwater fish species. This study demonstrates that 90% of known species can be delineated using barcodes. Moreover, it reveals numerous genetic discontinuities indicative of independently evolving lineages within described species, which points to the presence of morphologically cryptic diversity. From the 752 species analyzed, our survey flagged 138 named species that represent as many as 347 candidate species, which suggests a 28% increase in species diversity. In contrast, several species of parasitic and nonparasitic lampreys lack such discontinuity and may represent alternative life history strategies within single species. Therefore, it appears that the current North American freshwater fish taxonomy at the species level significantly conceals diversity in some groups, although artificially creating diversity in others. In addition to providing an easily accessible digital identification system, this study identifies 151 fish species for which taxonomic revision is required.

  9. Fishing effects on energy use by North Sea fishes

    NASA Astrophysics Data System (ADS)

    Jennings, Simon; van Hal, Ralf; Hiddink, Jan G.; Maxwell, Tracy A. D.

    Fishing affects patterns of energy use in fish populations, as demonstrated by changes in population energy consumption and the size and age when energy demands are greatest. We compare theoretical predictions and observed patterns of energy use (expressed as the primary production required to support fish production) by North Sea fish, based on simple and widely applicable theory that links life history parameters, fishing mortality ( F), trophic transfer efficiency and relationships between size and trophic level (as determined using nitrogen stable isotope analysis). For the demersal species that dominate total biomass, relationships between size and trophic level were quite consistent among years. There were large decreases in relative energy requirements of all exploited demersal populations except plaice Pleuronectes platessa during the last 3 to 4 decades. Relative energy requirements of plaice were more stable because smaller plaice, which now dominate the exploited population, feed at higher trophic levels than larger plaice. The sizes and ages when population energy demands were greatest fell with increasing fishing mortality and differences between the predicted ( F = 0) and observed ages at maximum energy demand were greater in larger species. Currently, the energy demands of most species peak early in life (1-3 years) and largely reflect patterns of recruitment, leading to a homogenisation of the trophodynamics of the fish community. The fate of energy that is no longer used by commercially exploited species is not clear, partly because of the infrequent and untargeted monitoring of species that are more resilient to fishing. However, we conducted a preliminary assessment of the energy demands of solenette Buglossidium luteum, a very abundant small flatfish in the central North Sea that has increased in abundance in recent years. The solenette's high abundance and resilience to fishing, suggests that it now requires 35% of primary production in part of

  10. Mercury in fishes of Alaska, with emphasis on subsistence species.

    PubMed

    Jewett, Stephen C; Duffy, Lawrence K

    2007-11-15

    In the north, the presence of mercury (Hg) in food leading to chronic exposure is a scientific, economic and political issue. Guidelines have been established for the safe consumption of fish containing Hg, however, adherence to these guidelines must be weighed against the health benefits of consuming fish, such as from the omega-3 polyunsaturated fatty acids, vitamins and minerals. Alaskan Natives generally consume much more fish than the national average. This review summarizes and synthesizes the significant amount of data that has been generated on Hg in Alaska fish, particularly those consumed by Alaskans. Also included are a review of the benefits of eating fish, human health concerns relating to Hg toxicity and various risk assessment guidelines for food consumption. Emphasis was placed on methylmercury (MeHg), the most toxic form to humans. Hg concentrations were examined in 17 freshwater fish species and 24 anadromous and marine fish species, for a total of 2,692 specimens. For freshwater fish the greatest database was on northern pike (Esox lucius). For anadromous and marine fish the greatest database was on Pacific halibut (Hippoglossus stenolepis) and the five species of Pacific salmon (Oncorhynchus spp.). Overall, most fish had muscle Hg concentrations of < or =1 mg kg(-1) (wet wt.), within the USFDA's Action Level and Alaska's guideline for safe concentrations of MeHg in edible fish. Pacific salmon, the most commonly consumed fish group, had exceptionally low (< or =0.1 mg kg(-1)) Hg concentrations. Pacific halibut muscle Hg content was less than 0.3 mg kg(-1). Northern pike, a piscivorous (fish-eating) and long-lived fish, contained the highest muscle Hg values, often exceeding the state's guidelines for food consumption. A discussion of the safe consumption level for pike is included. PMID:17825359

  11. Implication of the visual system in the regulation of activity cycles in the absence of solar light: 2-[125I]iodomelatonin binding sites and melatonin receptor gene expression in the brains of demersal deep-sea gadiform fish

    PubMed Central

    Priede, I. G.; Williams, L. M.; Wagner, H.-J.; Thom, A.; Brierley, I.; Collins, M. A.; Collin, S. P.; Merrett, N. R.; Yau, C.

    1999-01-01

    Relative eye size, gross brain morphology and central localization of 2-[125I]iodomelatonin binding sites and melatonin receptor gene expression were compared in six gadiform fish living at different depths in the north-east Atlantic Ocean: Phycis blennoides (capture depth range 265 to 1260 m), Nezumia aequalis (445 to 1512 m), Coryphaenoides rupestris (706 to 1932 m), Trachyrincus murrayi (1010 to 1884 m), Coryphaenoides guentheri (1030 m) and Coryphaenoides (Nematonurus) armatus (2172 to 4787 m). Amongst these, the eye size range was 0.15 to 0.35 of head length with a value of 0.19 for C. (N.) armatus, the deepest species. Brain morphology reflected behavioural differences with well-developed olfactory regions in P. blennoides, T. murrayi and C. (N.) armatus and evidence of olfactory deficit in N. aequalis, C. rupestris and C. guentheri. All species had a clearly defined optic tectum with 2-[125I]iodomelatonin binding and melatonin receptor gene expression localized to specific brain regions in a similar pattern to that found in shallow-water fish. Melatonin receptors were found throughout the visual structures of the brains of all species. Despite living beyond the depth of penetration of solar light these fish have retained central features associated with the coupling of cycles of growth, behaviour and reproduction to the diel light–dark cycle. How this functions in the deep sea remains enigmatic.

  12. Trace metals in some fish species of South Carolina.

    PubMed

    Koli, A K; Sandhu, S S; Canty, W T; Felix, K L; Reed, R J; Whitmore, R

    1978-09-01

    Samples of fish from freshwater and saltwater sources of ocean, rivers, and lakes over the state of South Carolina were collected. The fish collected were Shrimp, Silver Snapper, White Bass, Catfish, Mudfish and Trout. The sample flasks were incubated in a constant temperature stirring water bath at 58 degrees C until clear solution in reagent-grade nitric acid. Triplicate samples of fish muscle tissue were analyzed by wet digestion and dry digestion methods. Trace metal levels were determined by flame atomic absorption using a Perkin-Elmer Model 306 spectrophotometer. Mercury determination was made by Coleman MAS-50 mercury analyzer. A significant finding of this report is that saltwater fish have more trace metal levels than freshwater fish, and larger fish have higher trace metals than smaller fish. Iron and zinc levels were much higher in Shrimp than any other species analyzed.

  13. Spatial and temporal changes of coastal demersal assemblages in the Gulf of Cadiz (SW Spain) in relation to environmental conditions

    NASA Astrophysics Data System (ADS)

    Catalán, I. A.; Jiménez, M. T.; Alconchel, J. I.; Prieto, L.; Muñoz, J. L.

    2006-06-01

    Changes in space and time in "global values" (numerical abundance, biomass, diversity ( H', Shannon-Wiener), number of species ( S)) and in the structure of demersal assemblages were studied in a coastal fringe of the Gulf of Cadiz between the Guadiana and the Guadalquivir rivers. Further, the seasonal patterns in length-frequency histograms and the percentage of juveniles of 10 selected species were calculated based on literature data on length at first maturity ( Lm). Twenty-four successive monthly demersal fishery surveys were conducted between March 2002 and February 2004 at eight fixed stations between 5 and 30 m depth, from which 175 hauls were analysed. Fifty-seven taxa belonging to four orders of fish, cephalopods and crustaceans were selected for analysis. Environmental characterisation included the variables depth, sediment type, bottom temperature (BT), total bottom chlorophyll (BChl), and bottom suspended solids (BSS). Relationships among environmental variables as well as their spatial and temporal changes were explored through Spearman rank correlation ( Rs) and Kruskall-Wallis tests. Their relation to global values was assessed through Rs. Differences in global values with respect to space (station) and time (year and season) was assessed through ANOVA techniques via GLM. Spatial and temporal differences in demersal structure were analysed through different multivariate routines from PRIMER including between-matrix correlation analysis (RELATE), analysis of similarities (ANOSIM), species contributions to similarity/dissimilarity (SIMPER), non-metric multidimensional scaling (MDS) and group-average cluster analysis. The degree of match between species-similarity matrices (Bray-Curtis, root-root transformed) and environmental similarity matrices (Euclidean distance) was assessed through the BIO-ENV approach also from PRIMER. Individual Rs correlations between selected species and environmental variables also were performed at each station. A strong

  14. Classification of species attributes for Pacific Northwest freshwater fishes

    USGS Publications Warehouse

    Zaroban, D.W.; Mulvey, M.P.; Maret, T.R.; Hughes, R.M.; Merritt, G.D.

    1999-01-01

    Fish assemblages integrate physical and chemical habitat conditions and are used to evaluate the condition of water resources in the Pacific Northwest. To facilitate such evaluations, we classified each of the 132 freshwater fish species known to occur in the Pacific Northwest (Idaho, Oregon, Washington) by its origin, overall pollution tolerance, adult habitat, adult feeding, and water temperature preference. Recommendations from regional fishery experts, published literature, and the aggregate experience of the authors were used to classify species. The attribute classifications were responsive to human disturbance of aquatic habitats when applied to fish assemblages sampled from throughout the region. Our attribute classification of fish species promotes use of fish assemblages to evaluate water resource conditions regionally and fosters greater acceptance of biological measures of water resource quality.

  15. Oral vaccination of fish: Lessons from humans and veterinary species.

    PubMed

    Embregts, Carmen W E; Forlenza, Maria

    2016-11-01

    The limited number of oral vaccines currently approved for use in humans and veterinary species clearly illustrates that development of efficacious and safe oral vaccines has been a challenge not only for fish immunologists. The insufficient efficacy of oral vaccines is partly due to antigen breakdown in the harsh gastric environment, but also to the high tolerogenic gut environment and to inadequate vaccine design. In this review we discuss current approaches used to develop oral vaccines for mass vaccination of farmed fish species. Furthermore, using various examples from the human and veterinary vaccine development, we propose additional approaches to fish vaccine design also considering recent advances in fish mucosal immunology and novel molecular tools. Finally, we discuss the pros and cons of using the zebrafish as a pre-screening animal model to potentially speed up vaccine design and testing for aquaculture fish species. PMID:27018298

  16. Impacts of fishing and environmental factors driving changes on littoral fish assemblages in a subtropical oceanic island

    NASA Astrophysics Data System (ADS)

    Sangil, Carlos; Martín-García, Laura; Hernández, José Carlos; Concepción, Laura; Fernández, Raúl; Clemente, Sabrina

    2013-08-01

    The structure of demersal fish assemblages of commercial interest was studied at 51 sites on La Palma Island (Canary Islands, northeastern Atlantic). On this island, demersal fish populations are limited and independent from other islands. As deep water separates the islands and the shallow sublittoral platforms are not continuous, adult inter-island migrations are not possible except between the islands of Lanzarote and Fuerteventura. Otherwise, each island functions as a closed system, and the status of an island fish assemblage depends on local environmental conditions and activities performed in situ by the islanders. These circumstances provide a unique opportunity to test the intrainsular variability of fish assemblages. With this background, environmental parameters, fishing pressure and distance to the MPA were considered to identify the main factors explaining the spatial variation of fish assemblages off La Palma Island. Twenty-six fish species were recorded, but 60% of the total fish biomass was represented by only five species (Sparisoma cretense, Pomadasys incisus, Canthidermis sufflamen, Diplodus cervinus cervinus and Bodianus scrofa). However, the structure of assemblages was heterogeneous in response to different variables and showed substantial spatial variation. The assemblages were strongly modified by the presence of upright seaweed cover, fishing activities, and certain environmental variables. Differences were more pronounced in species that occupied the higher trophic levels. The most disturbed assemblages were those located in areas with lower upright seaweed cover and with higher fishing pressure, whereas the best-preserved assemblages corresponded to sites with controlled fishing activities, located within the MPA.

  17. Modeling of Valued Fish Species in River Networks

    EPA Science Inventory

    Riverine fish provide many ecosystem services in support of human well-being, including food, recreation, and biodiversity. Under future drivers of land use and climate change, inland waters are likely to be impaired, and conservation and protection of fish species and services ...

  18. Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

    PubMed

    Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

    2010-05-22

    Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region. PMID:20106849

  19. Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

    PubMed

    Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

    2010-05-22

    Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region.

  20. Development of solar drying model for selected Cambodian fish species.

    PubMed

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6 °C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg · h(-1). Based on coefficient of determination (R(2)), chi-square (χ(2)) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing.

  1. Development of solar drying model for selected Cambodian fish species.

    PubMed

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6 °C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg · h(-1). Based on coefficient of determination (R(2)), chi-square (χ(2)) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  2. Development of Solar Drying Model for Selected Cambodian Fish Species

    PubMed Central

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6°C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg·h−1. Based on coefficient of determination (R2), chi-square (χ2) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  3. Beyond the zebrafish: diverse fish species for modeling human disease

    PubMed Central

    Schartl, Manfred

    2014-01-01

    ABSTRACT In recent years, zebrafish, and to a lesser extent medaka, have become widely used small animal models for human diseases. These organisms have convincingly demonstrated the usefulness of fish for improving our understanding of the molecular and cellular mechanisms leading to pathological conditions, and for the development of new diagnostic and therapeutic tools. Despite the usefulness of zebrafish and medaka in the investigation of a wide spectrum of traits, there is evidence to suggest that other fish species could be better suited for more targeted questions. With the emergence of new, improved sequencing technologies that enable genomic resources to be generated with increasing efficiency and speed, the potential of non-mainstream fish species as disease models can now be explored. A key feature of these fish species is that the pathological condition that they model is often related to specific evolutionary adaptations. By exploring these adaptations, new disease-causing and disease-modifier genes might be identified; thus, diverse fish species could be exploited to better understand the complexity of disease processes. In addition, non-mainstream fish models could allow us to study the impact of environmental factors, as well as genetic variation, on complex disease phenotypes. This Review will discuss the opportunities that such fish models offer for current and future biomedical research. PMID:24271780

  4. Seasonal changes in the demersal nekton community off the Changjiang River estuary

    NASA Astrophysics Data System (ADS)

    Jiang, Yazhou; Ling, Jianzhong; Li, Jiansheng; Yang, Linlin; Li, Shengfa

    2014-03-01

    The diversity, community structure and seasonal variation in demersal nekton off the Changjiang (Yangtze) River estuary was evaluated using monthly trawl survey data, collected between December 2008 and November 2009. A total of 95 species (56 teleosts, 11 cephalopods, and 28 decapod crustaceans) from 69 genera, 49 families and 15 orders were collected. These species could be classified into six groups on the basis of temporal distribution patterns. The resident crab Ovalipes punctatus dominated the community, both in number and biomass. A clear seasonal succession was observed in the species composition. Cluster analysis revealed three primary seasonal groups corresponding to the samples collected in winter-spring, late spring-summer and late summer-autumn. The highest biomass and lowest diversity were observed in summer, while the lowest biomass and highest diversity in winter. The abundance-biomass comparison curves and community composition suggested that the investigated community was moderately disturbed. The results suggest that reduction in fishing pressure and in the degree of seasonal hypoxia are essential for sustainable resource management off the Changjiang River estuary.

  5. Genetic assessment of ornamental fish species from North East India.

    PubMed

    Dhar, Bishal; Ghosh, Sankar Kumar

    2015-01-25

    Ornamental fishes are traded with multiple names from various parts around the world, including North East India. Most are collected from the wild, due to lack of species-specific culture or breeding, and therefore, such unmanaged collection of the wild and endemic species could lead to severe threats to biodiversity. Despite many regulatory policies, trade of threatened species, including the IUCN listed species have been largely uncontrolled, due to species identification problems arising from the utilization of multiple trade names. So, the development of species-specific DNA marker is indispensable where DNA Barcoding is proved to be helpful in species identification. Here, we investigated, through DNA Barcoding and morphological assessment, the identification of 128 ornamental fish specimens exported from NE India from different exporters. The generated sequences were subjected to similarity match in BOLD-IDS as well as BLASTN, and analysed using MEGA5.2 for species identification through Neighbour-Joining (NJ) clustering, and K2P distance based approach. The analysis revealed straightforward identification of 84 specimens into 35 species, while 44 specimens were difficult to distinguish based on CO1 barcode alone. However, these cases were resolved through morphology, NJ and distanced based method and found to be belonging to 16 species. Among the 51 identified species, 14 species represented multiple trade names; 17 species belonged to threatened category. Species-level identification through DNA Barcoding along with traditional morphotaxonomy reflects its efficacy in regulating ornamental fish trade and therefore, appeals for their conservation in nature. The use of trade names rather than the zoological name created the passage for trafficking of the threatened species and demands immediate attention for sustaining wildlife conservation. PMID:25447914

  6. Genetic assessment of ornamental fish species from North East India.

    PubMed

    Dhar, Bishal; Ghosh, Sankar Kumar

    2015-01-25

    Ornamental fishes are traded with multiple names from various parts around the world, including North East India. Most are collected from the wild, due to lack of species-specific culture or breeding, and therefore, such unmanaged collection of the wild and endemic species could lead to severe threats to biodiversity. Despite many regulatory policies, trade of threatened species, including the IUCN listed species have been largely uncontrolled, due to species identification problems arising from the utilization of multiple trade names. So, the development of species-specific DNA marker is indispensable where DNA Barcoding is proved to be helpful in species identification. Here, we investigated, through DNA Barcoding and morphological assessment, the identification of 128 ornamental fish specimens exported from NE India from different exporters. The generated sequences were subjected to similarity match in BOLD-IDS as well as BLASTN, and analysed using MEGA5.2 for species identification through Neighbour-Joining (NJ) clustering, and K2P distance based approach. The analysis revealed straightforward identification of 84 specimens into 35 species, while 44 specimens were difficult to distinguish based on CO1 barcode alone. However, these cases were resolved through morphology, NJ and distanced based method and found to be belonging to 16 species. Among the 51 identified species, 14 species represented multiple trade names; 17 species belonged to threatened category. Species-level identification through DNA Barcoding along with traditional morphotaxonomy reflects its efficacy in regulating ornamental fish trade and therefore, appeals for their conservation in nature. The use of trade names rather than the zoological name created the passage for trafficking of the threatened species and demands immediate attention for sustaining wildlife conservation.

  7. [Applicability of DNA barcode for identification of fish species].

    PubMed

    Arami, Shinichiro; Sato, Megumi; Futo, Satoshi

    2011-01-01

    DNA barcoding is a species identification technique, which uses a very short DNA sequence from a region of approximately 650 base-pairs in the 5'-end of the mitochondrial cytochrome c oxidase subunit I gene as a marker to identify species of mammals and fishes. The applicability of DNA barcoding for identification of fish species consumed in Japan was studied. Among thirty-one fresh or processed fishes were obtained from the market, two samples could not be identified due to lack of data in the Barcode of Life Data (BOLD) database. However, BLAST-search of 16S rRNA genes in the National Center for Biotechnology Information (NCBI) database and the PCR-RFLP method published by the Food and Agricultural Materials Inspection Center (FAMIC) were found to be applicable to identify these 2 fishes. The results show that the DNA barcoding technique is potentially useful as a tool for confirming the proper labeling of fish species in the Japanese market. PMID:21720128

  8. Nerocila species (Crustacea, Isopoda, Cymothoidae) from Indian marine fishes.

    PubMed

    Trilles, Jean-Paul; Rameshkumar, Ganapathy; Ravichandran, Samuthirapandian

    2013-03-01

    Eleven Nerocila species are recorded from 22 marine fishes belonging to 15 families. Three, Nerocila arres, Nerocila depressa, and Nerocila loveni, are new for the Indian fauna. N. arres and Nerocila sigani, previously synonymized, are redescribed and their individuality is restored. Nerocila exocoeti, until now inadequately identified, is described and distinctly characterized. A neotype is designated. New hosts were identified for N. depressa, N. loveni, Nerocila phaiopleura, Nerocila serra, and Nerocila sundaica. Host-parasite relationships were considered. The parasitologic indexes were calculated. The site of attachment of the parasites on their hosts was also observed. A checklist of the nominal Nerocila species until now reported from Indian marine fishes was compiled.

  9. Demersal Assemblages in the Irish Sea, St George's Channel and Bristol Channel

    NASA Astrophysics Data System (ADS)

    Ellis, J. R.; Rogers, S. I.; Freeman, S. M.

    2000-09-01

    Macro-epibenthic invertebrate and demersal fish assemblages are described from 101 beam trawl stations in the Irish Sea, St George's Channel and Bristol Channel. Cluster analysis was used to identify those stations where catches were similar, in terms of species composition and biomass, and six assemblages were identified. The average similarity within these assemblages ranged from 44 to 58%. Species that were indicative of the differences between the six assemblages were used to describe their biological characteristics. Plaice and dab dominated on fine substrates in inshore waters ( Pleuronectes- Limanda assemblage), whereas sea urchins and sun-stars dominated on the coarser substrates further offshore ( Echinus- Crossaster assemblage). Thickback sole and hermit crabs were typical of the transitional area ( Microchirus-Pagurus assemblage). Norway lobster and witch dominated on the muddy sediments in the Irish Sea ( Nephrops- Glyptocephalus assemblage). Dead man's fingers beds ( Alcyonium assemblage) occurred on coarse substrates in inshore waters throughout the study area, whereas common spider crabs were only dominant in the Bristol Channel ( Maja assemblage). The common starfish ( Asterias rubens) was an important component of all assemblages. The distribution of these assemblages was primarily correlated with depth, temperature and substrate type. Their spatial distribution was similar to previously described distribution patterns of sediments and infaunal communities in the area.

  10. [Fatty acids in different edible fish species from Mexico].

    PubMed

    Castro González, María Isabel; Rodríguez, Ana Gabriela Maafs; Galindo Gómez, Carlos

    2013-12-01

    Different biotic and abiotic factors determine the fatty acid (FA) composition of fish tissues and organs. This information is useful for humans due to the fact that fish consumption is associated with health benefits. The aim of the present study was to identify the variation in the concentration of fatty acids, according to different factors, among ten edible marine fish species in Mexico, collected from June to December 2009 in the largest fish market in Mexico City: Euthynnus alletteratus, Sciaenops ocellatus, Bairdiella chrysoura, Sphyraena guachancho, Symphurus elongatus, Istiophorus platypterus, Ophichthus rex, Eugerres plumieri, Eucinostomus entomelas and Oreochromrnis mossambicus. Lipid content was gravimetrically quantified, the fatty acids were determined using a gas chromatograph and the results were statistically analyzed. Total lipid content ranged from 0.93 to 1.95 g/100 g in E. entomelas and O. urolepis hornorum, respectively. E. alletteratus, B. chrysoura, S. elongatus, I. platypterus, O. rex and E. plumieri presented the following order in FA concentration: Polyunsaturated FA (PUFA)>Saturated FA (SFA)>Monounsaturated FA (MUFA). S. ocellatus, S. guachancho and E. entomelas presented SFA>PUFA>MUFA; and only O. mossambicus presented SFA>MUFA>PUFA. O. mossambicus had the highest concentration (mg/100 g) of SFA (559.40) and MUFA (442.60), while B. chrysoura presented the highest content (mg/100 g) of PUFA (663.03), n-3 PUFA (514.03), EPA+DHA (506.10) and n-6 PUFA (145.80). Biotic and abiotic factors of the analyzed fish significantly influenced their FA concentration. Subtropical species presented 42.1% more EPA+DHA than tropical specie. Values presented here will vary according to the changes in the ecosystem and characteristics of each fish species, however the information generated in the present study is useful for improving fish consumption recommendations. PMID:24432548

  11. Metal concentrations in various fish organs of different fish species from Poyang Lake, China.

    PubMed

    Wei, YiHua; Zhang, JinYan; Zhang, DaWen; Tu, TianHua; Luo, LinGuang

    2014-06-01

    Concentrations of As, Cd, Cr, Cu, Hg, Ni, Pb, and Zn in the muscle of eleven fish species (bighead carp, bream, catfish, carp, crucian, Culter alburnus, grass carp, mandarin fish, white semiknife carp, silver carp, and yellow catfish) from Poyang Lake were analysed using inductive coupling plasma mass spectrometry. Metal levels in other organs (e.g., bladder, gill, kidney, liver, and spleen) of bighead carp, carp, grass carp, and silver carp were also determined. The results showed that metal concentrations in the muscle of all fish species were significantly lower than the proposed limits. Heavy metal concentrations were found to be substantially higher in benthic fish than in pelagic fish. Higher Hg contents were observed in predatory fish. In addition, various metals showed different affinity to fish organs. Hg was the most abundant in muscle, while Ni and Pb concentrations were highest in gills, Cd and Zn concentrations were highest in kidneys, and Cu was most commonly found in livers. Estimations of health risks revealed no evidence of potential threats to consumers. PMID:24681447

  12. Accounting for Incomplete Species Detection in Fish Community Monitoring

    SciTech Connect

    McManamay, Ryan A; Orth, Dr. Donald J; Jager, Yetta

    2013-01-01

    Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

  13. Abundance and tidal behaviour of pelagic fish in the gateway to the Wadden Sea

    NASA Astrophysics Data System (ADS)

    Couperus, Bram; Gastauer, Sven; Fässler, Sascha M. M.; Tulp, Ingrid; van der Veer, Henk W.; Poos, Jan Jaap

    2016-03-01

    The shallow coast of The Netherlands is an important habitat for small pelagic fish. They form one of the major links between plankton and the higher trophic levels. Predatory fish, sea mammals and birds rely on small pelagic fish as a major food source. Currently, monitoring of fish in the Dutch coastal zone mainly focuses on demersal species, using bottom trawls and fykes. Four hydro-acoustic surveys were carried out in May and October 2010/2011 in the Marsdiep area, a relatively deep tidal inlet in the western Wadden Sea, to quantify abundances of pelagic fish. The aims of this study were to (1) describe temporal and vertical variations in fish distribution and school dimensions in relation to tide, and (2) estimate biomass of pelagic fish and their proportion to total fish biomass. The biomass of pelagic fish in the Marsdiep area ranged between 23 and 411 kg/ha. These were mainly sprat, but also young herring, anchovy and pilchard. The fish was scattered in small schools with volumes smaller than 5m3 and concentrated in the top 10 m below the surface. There was a clear effect of tidal cycle on school volume and fish abundance, with larger densities and larger schools at high tide compared to low tide. In May, sandeel contributed substantially to the pelagic assemblage, whereas in October sandeel was absent in the trawl catches, most likely because they stayed buried in the seabed from late summer to spring. The presence of pilchard and anchovy confirmed their re-establishment in the Southern North Sea and Wadden Sea. The abundance of pelagic fish exceeded the biomass of demersal fish in the western Wadden Sea by an order of magnitude. This finding is relevant for ecosystem studies. The fact that this study suggests that small pelagics outnumber demersal species to such a large extent calls for a rethinking of the allocation of monitoring effort in the Dutch coastal zone.

  14. Fish and wildlife species as sentinels of environmental endocrine disruption

    USGS Publications Warehouse

    Sheffield, S.R.; Matter, J.M.; Rattner, B.A.; Guiney, P.D.; Kendall, Ronald J.; Dickerson, Richard L.; Giesy, John P.; Suk, William P.

    1998-01-01

    This chapter provides an overview of the history and criteria for use of captive and free-ranging fish and wildlife (amphibians, reptiles, birds, and mammals) species as sentinels of potential environmental endocrine disruption. Biochemical, behavioral, physiological, immunological, genetic, reproductive, developmental, and ecological correlates of endocrine disruption in these sentinels are presented and reviewed. In addition, data needs to promote better use of sentinel species in the assessment of endocrine disruption are discussed.

  15. Liquid chromatographic determination of oxytetracycline in edible fish fillets from six species of fish

    USGS Publications Warehouse

    Meinertz, J.R.; Stehly, G.R.; Gingerich, W.H.

    1998-01-01

    The approved use of oxytetracycline (OTC) in U.S. Aquaculture is limited to specific diseases in salmonids and channel catfish. OTC may also be effective in controlling diseases in other fish species important to public aquaculture, but before approved use of OTC can be augmented, an analytical method for determining OTC in fillet tissue from multiple species of fish will be required to support residue depletion studies. The objective of this study was to develop and validate a liquid chromatographic (LC) method that is accurate, precise, and sensitive for OTC in edible fillets from multiple species of fish. Homogenized fillet tissues from walleye, Atlantic salmon, striped bass, white sturgeon, rainbow trout, and channel catfish were fortified with OTC at nominal concentrations of 10, 20, 100, 1000, and 5000 ng/g. In tissues fortified with OTC at 100, 1000, and 5000 ng/g, mean recoveries ranged from 83 to 90%, and relative standard deviations (RSDs) ranged from 0.9 to 5.8%. In all other tissues, mean recoveries ranged from 59 to 98%, and RSDs ranged from 3.3 to 20%. Method quantitation limits ranged from 6 to 22 ng/g for the 6 species. The LC parameters produced easily integratable OTC peaks without coelution of endogenous compounds. The method is accurate, precise, and sensitive for OTC in fillet tissue from 6 species of fish from 5 phylogenetically diverse groups.

  16. Liquid chromatographic determination of oxytetracycline in edible fish fillets from six species of fish.

    PubMed

    Meinertz, J R; Stehly, G R; Gingerich, W H

    1998-01-01

    The approved use of oxytetracycline (OTC) in U.S. aquaculture is limited to specific diseases in salmonids and channel catfish. OTC may also be effective in controlling diseases in other fish species important to public aquaculture, but before approved use of OTC can be augmented, an analytical method for determining OTC in fillet tissue from multiple species of fish will be required to support residue depletion studies. The objective of this study was to develop and validate a liquid chromatographic (LC) method that is accurate, precise, and sensitive for OTC in edible fillets from multiple species of fish. Homogenized fillet tissues from walleye, Atlantic salmon, striped bass, white sturgeon, rainbow trout, and channel catfish were fortified with OTC at nominal concentrations of 10, 20, 100, 1000, and 5000 ng/g. In tissues fortified with OTC at 100, 1000, and 5000 ng/g, mean recoveries ranged from 83 to 90%, and relative standard deviations (RSDs) ranged from 0.9 to 5.8%. In all other tissues, mean recoveries ranged from 59 to 98%, and RSDs ranged from 3.3 to 20%. Method quantitation limits ranged from 6 to 22 ng/g for the 6 species. The LC parameters produced easily integratable OTC peaks without coelution of endogenous compounds. The method is accurate, precise, and sensitive for OTC in fillet tissue from 6 species of fish from 5 phylogenetically diverse groups.

  17. Species Identification of Marine Fishes in China with DNA Barcoding

    PubMed Central

    Zhang, Junbin

    2011-01-01

    DNA barcoding is a molecular method that uses a short standardized DNA sequence as a species identification tool. In this study, the standard 652 base-pair region of the mitochondrial cytochrome oxidase subunit I gene (COI) was sequenced in marine fish specimens captured in China. The average genetic distance was 50-fold higher between species than within species, as Kimura two parameter (K2P) genetic distances averaged 15.742% among congeners and only 0.319% for intraspecific individuals. There are no overlaps of pairwise genetic variations between conspecific and interspecific comparisons apart from the genera Pampus in which the introgressive hybridization was detected. High efficiency of species identification was demonstrated in the present study by DNA barcoding. Due to the incidence of cryptic species, an assumed threshold is suggested to expedite discovering of new species and biodiversity, especially involving biotas of few studies. PMID:21687792

  18. Current and future assisted reproductive technologies for fish species.

    PubMed

    Weber, Gregory M; Lee, Cheng-Sheng

    2014-01-01

    The Food and Agriculture Organization of the United Nations (FAO) estimates that in 2012 aquaculture production of fish will meet or exceed that of the capture fisheries for the first time. Thus, we have just turned the corner from a predominantly hunting gathering approach to meeting our nutritional needs from fish, to a farming approach. In 2012, 327 finfish species and five hybrids were covered by FAO aquaculture statistics, although farming of carps, tilapias, salmonids, and catfishes account for most of food-fish production from aquaculture. Although for most major species at least part of production is based on what might be considered domesticated animals, only limited production in most species is based on farming of improved lines of fish or is fully independent of wild seedstock. Consistent with the infancy of most aquaculture industries, much of the development and implementation of reproductive technologies over the past 100 years has been directed at completion of the life cycle in captivity in order to increase seed production and begin the process of domestication. The selection of species to farm and the emphasis of selective breeding must also take into account other ways to modify performance of an animal. Reproductive technologies have also been developed and implemented to affect many performance traits among fishes. Examples include technologies to control gender, alter time of sexual maturation, and induce sterilization. These technologies help take advantage of sexually dimorphic growth, overcome problems with growth performance and flesh quality associated with sexual maturation, and genetic containment. Reproductive technologies developed to advance aquaculture and how these technologies have been implemented to advance various sectors of the aquaculture industry are discussed. Finally, we will present some thoughts regarding future directions for reproductive technologies and their applications in finfish aquaculture. PMID:24170354

  19. Current and future assisted reproductive technologies for fish species.

    PubMed

    Weber, Gregory M; Lee, Cheng-Sheng

    2014-01-01

    The Food and Agriculture Organization of the United Nations (FAO) estimates that in 2012 aquaculture production of fish will meet or exceed that of the capture fisheries for the first time. Thus, we have just turned the corner from a predominantly hunting gathering approach to meeting our nutritional needs from fish, to a farming approach. In 2012, 327 finfish species and five hybrids were covered by FAO aquaculture statistics, although farming of carps, tilapias, salmonids, and catfishes account for most of food-fish production from aquaculture. Although for most major species at least part of production is based on what might be considered domesticated animals, only limited production in most species is based on farming of improved lines of fish or is fully independent of wild seedstock. Consistent with the infancy of most aquaculture industries, much of the development and implementation of reproductive technologies over the past 100 years has been directed at completion of the life cycle in captivity in order to increase seed production and begin the process of domestication. The selection of species to farm and the emphasis of selective breeding must also take into account other ways to modify performance of an animal. Reproductive technologies have also been developed and implemented to affect many performance traits among fishes. Examples include technologies to control gender, alter time of sexual maturation, and induce sterilization. These technologies help take advantage of sexually dimorphic growth, overcome problems with growth performance and flesh quality associated with sexual maturation, and genetic containment. Reproductive technologies developed to advance aquaculture and how these technologies have been implemented to advance various sectors of the aquaculture industry are discussed. Finally, we will present some thoughts regarding future directions for reproductive technologies and their applications in finfish aquaculture.

  20. Fish species identification in surimi-based products.

    PubMed

    Pepe, Tiziana; Trotta, Michele; Di Marco, Isolina; Anastasio, Aniello; Bautista, José Manuel; Cortesi, Maria Luisa

    2007-05-01

    Whole fish morphologically identified as belonging to Theragra chalcogramma, Merluccius merluccius, Merluccius hubbsi, and Merluccius capensis and 19 fish products commercialized as surimi with different commercial brands and labeled as T. chalcogramma were analyzed by direct sequence analysis of the cytochrome b gene. A phylogenetic analysis of surimi products was performed as well. Results demonstrated that mislabeling is a large-scale phenomenon, since 84.2% of surimi-based fish products sold as T. chalcogramma (16/19) were prepared with species different from the one declared. In fact, only three samples (samples 15-17) were found to belong to T. chalcogramma. In the remaining samples, Merluccidae (samples 4-14), Gadidae (samples 18 and 19), Sparidae (sample 1), and Pomacentridae (samples 2 and 3) families were detected. A phylogenetic tree was constructed, and the bootstrap value was calculated. According to this methodology, 11 samples were grouped in the same clade as Merluccius spp.

  1. Fish introductions reveal the temperature dependence of species interactions

    PubMed Central

    Hein, Catherine L.; Öhlund, Gunnar; Englund, Göran

    2014-01-01

    A major area of current research is to understand how climate change will impact species interactions and ultimately biodiversity. A variety of environmental conditions are rapidly changing owing to climate warming, and these conditions often affect both the strength and outcome of species interactions. We used fish distributions and replicated fish introductions to investigate environmental conditions influencing the coexistence of two fishes in Swedish lakes: brown trout (Salmo trutta) and pike (Esox lucius). A logistic regression model of brown trout and pike coexistence showed that these species coexist in large lakes (more than 4.5 km2), but not in small, warm lakes (annual air temperature more than 0.9–1.5°C). We then explored how climate change will alter coexistence by substituting climate scenarios for 2091–2100 into our model. The model predicts that brown trout will be extirpated from approximately half of the lakes where they presently coexist with pike and from nearly all 9100 lakes where pike are predicted to invade. Context dependency was critical for understanding pike–brown trout interactions, and, given the widespread occurrence of context-dependent species interactions, this aspect will probably be critical for accurately predicting climate impacts on biodiversity. PMID:24307673

  2. Global patterns and predictors of fish species richness in estuaries.

    PubMed

    Vasconcelos, Rita P; Henriques, Sofia; França, Susana; Pasquaud, Stéphanie; Cardoso, Inês; Laborde, Marina; Cabral, Henrique N

    2015-09-01

    1. Knowledge of global patterns of biodiversity and regulating variables is indispensable to develop predictive models. 2. The present study used predictive modelling approaches to investigate hypotheses that explain the variation in fish species richness between estuaries over a worldwide spatial extent. Ultimately, such models will allow assessment of future changes in ecosystem structure and function as a result of environmental changes. 3. A comprehensive worldwide data base was compiled of the fish assemblage composition and environmental characteristics of estuaries. Generalized Linear Models were used to quantify how variation in species richness among estuaries is related to historical events, energy dynamics and ecosystem characteristics, while controlling for sampling effects. 4. At the global extent, species richness differed among marine biogeographic realms and continents and increased with mean sea surface temperature, terrestrial net primary productivity and the stability of connectivity with a marine ecosystem (open vs. temporarily open estuaries). At a smaller extent (within a marine biogeographic realm or continent), other characteristics were also important in predicting variation in species richness, with species richness increasing with estuary area and continental shelf width. 5. The results suggest that species richness in an estuary is defined by predictors that are spatially hierarchical. Over the largest spatial extents, species richness is influenced by the broader distributions and habitat use patterns of marine and freshwater species that can colonize estuaries, which are in turn governed by history contingency, energy dynamics and productivity variables. Species richness is also influenced by more regional and local parameters that can further affect the process of community colonization in an estuary including the connectivity of the estuary with the adjacent marine habitat, and, over smaller spatial extents, the size of these

  3. Global patterns and predictors of fish species richness in estuaries.

    PubMed

    Vasconcelos, Rita P; Henriques, Sofia; França, Susana; Pasquaud, Stéphanie; Cardoso, Inês; Laborde, Marina; Cabral, Henrique N

    2015-09-01

    1. Knowledge of global patterns of biodiversity and regulating variables is indispensable to develop predictive models. 2. The present study used predictive modelling approaches to investigate hypotheses that explain the variation in fish species richness between estuaries over a worldwide spatial extent. Ultimately, such models will allow assessment of future changes in ecosystem structure and function as a result of environmental changes. 3. A comprehensive worldwide data base was compiled of the fish assemblage composition and environmental characteristics of estuaries. Generalized Linear Models were used to quantify how variation in species richness among estuaries is related to historical events, energy dynamics and ecosystem characteristics, while controlling for sampling effects. 4. At the global extent, species richness differed among marine biogeographic realms and continents and increased with mean sea surface temperature, terrestrial net primary productivity and the stability of connectivity with a marine ecosystem (open vs. temporarily open estuaries). At a smaller extent (within a marine biogeographic realm or continent), other characteristics were also important in predicting variation in species richness, with species richness increasing with estuary area and continental shelf width. 5. The results suggest that species richness in an estuary is defined by predictors that are spatially hierarchical. Over the largest spatial extents, species richness is influenced by the broader distributions and habitat use patterns of marine and freshwater species that can colonize estuaries, which are in turn governed by history contingency, energy dynamics and productivity variables. Species richness is also influenced by more regional and local parameters that can further affect the process of community colonization in an estuary including the connectivity of the estuary with the adjacent marine habitat, and, over smaller spatial extents, the size of these

  4. [Species composition and biodiversity of fish community in Dalian Lake, Shanghai].

    PubMed

    Yue, Feng; Luo, Zu-Kui; Wu, Di; Pei, En-Le; Wang, Tian-Hou

    2010-12-01

    A field fish survey of Dalian Lake, Shanghai was undertaken in Apr. 11-19, Apr. 27-May 8 and May 20-29, in total 24,061 fish individuals were collected, representing 22 species from 17 genera and 11 families. The dominant specie is Carassius auratus, accounting for 76.38% of the total. The eigenvalues of species diversity were showing below : Shannon-Wiener's index (H') being 1.0027, Simpson's index (lambda) being 0.5959, Pielous's index (J') being 0.3244, Margalef's index (D) being 2.0816 and relative rare species (R) being 90.91%. The fish community could be classified into 3 ecological types, which including river-sea migratory fish (3 species), river-lake migratory fish (1 species) and sedentary fish (18 species). Also they can be subcategoried into five types according to feeding habits, i.e., piscivorous fish (9 species), invertebrativorous fish (2 species), omnivores fish (7 species), planktotrophic fish (3 species), herbivorous fish (1 species). The results suggested that the biodiversity index and fish community stability are both at a low level. Compare to the lower reaches of Huangpu River, the proportion of piscivorous fish in Dalian Lake is higher, which suggested the water quality of Dalian Lake, located in the upper reaches of Huangpu River, is better than that in the downstream. It's required to intensify supervision and strengthen the environment protection of Dalian Lake to guarantee the sustainable development.

  5. Mineral Element Contents in Commercially Valuable Fish Species in Spain

    PubMed Central

    Peña-Rivas, Luis; Ortega, Eduardo; López-Martínez, Concepción; Olea-Serrano, Fátima; Lorenzo, Maria Luisa

    2014-01-01

    The aim of this study was to measure selected metal concentrations in Trachurus trachurus, Trachurus picturatus, and Trachurus mediterraneus, which are widely consumed in Spain. Principal component analysis suggested that the variable Cr was the main responsible variable for the identification of T. trachurus, the variables As and Sn for T. mediterraneus, and the rest of variables for T. picturatus. This well-defined discrimination between fish species provided by mineral element allows us to distinguish them on the basis of their metal content. Based on the samples collected, and recognizing the inferential limitation of the sample size of this study, the metal concentrations found are below the proposed limit values for human consumption. However, it should be taken into consideration that there are other dietary sources of these metals. In conclusion, metal contents in the fish species analyzed are acceptable for human consumption from a nutritional and toxicity point of view. PMID:24895678

  6. [Trophic webs of reef fishes in northwestern Cuba. I. Stomach contents].

    PubMed

    Hernández, Ivet; Aguilar, Consuelo; González Sanón, Gaspar

    2008-06-01

    Trophic webs of reef fishes in northwestern Cuba. I. Stomach contents. Studies on the reef fishes of Cuba are not rare, but most have two basic limitations: small sample sizes and exclusion of small species. Our study sampled more species and larger samples in the sublitoral region of Havana city (23 degrees 7.587' N, 82 degrees 25.793' W), 2-18 m deep. We collected fish weekly from October 2004 through February 2006 with traps and harpoon. Overfishing has modified the fish communities. We used the relative importance index to describe the diets of carnivore and omnivore species, and a modification of the relative abundance method for the herbivores and sponge-eating species. The main food items are benthonic crustaceans (crabs, shrimp, copepods) and bony fish (mainly demersal species). Most species are eurifagous and thus, less affected by anthropic disturbance than specialist feeders.

  7. Predicting fish species distribution in estuaries: Influence of species' ecology in model accuracy

    NASA Astrophysics Data System (ADS)

    França, Susana; Cabral, Henrique N.

    2016-10-01

    Current threats to biodiversity, combined with limited data availability, have made for species distribution models (SDMs) to be increasingly used due to their ability to predict species' potential distribution, by relating species occurrence with environmental estimates. Often used in ecology, conservation biology and environmental management, SDMs have been informing conservation strategies, and thus it is becoming crucial to understand how trustworthy their predictions are. Uncertainty in model predictions is expected, but knowing the origin of prediction errors may help reducing it. Indeed, uncertainty may be related not only with data quality and the modelling algorithm used, but also with species ecological characteristics. To investigate whether the performance of SDM's may vary with species' ecological characteristics, distribution models for 21 fish species occurring in estuaries from the Portuguese coast were examined. These models were built at two distinct spatial resolutions and seven environmental explanatory variables were used as predictors. SDMs' accuracy was assessed with the area under the curve (AUC) of receiver operating characteristics (ROC) plots, sensitivity and specificity. Relationships between each measure of accuracy and species ecological characteristics were then examined. SDMs of the fish species presented small differences between the considered scales, and predictors as latitude, temperature and salinity were often selected at both scales. Measures of model accuracy presented differences between species and scales, but generally higher accuracy was obtained at smaller spatial scales. Among the ecological traits tested, species feeding mode and estuarine use functional groups were the most influential on the performance of distribution models. Habitat tolerance (number of habitat types frequented), species abundance, body size and spawning period also showed some effect. This analyses will contribute to distinguish, based on species

  8. The influence of oceanographic scenarios on the population dynamics of demersal resources in the western Mediterranean: Hypothesis for hake and red shrimp off Balearic Islands

    NASA Astrophysics Data System (ADS)

    Massutí, Enric; Monserrat, Sebastià; Oliver, Pere; Moranta, Joan; López-Jurado, José Luis; Marcos, Marta; Hidalgo, Manuel; Guijarro, Beatriz; Carbonell, Aina; Pereda, Pilar

    2008-06-01

    The aim of the present paper is to study the relationships between some climatic indices and parental stock, recruitment and accessibility to trawl fishery of hake ( Merluccius merluccius) and red shrimp ( Aristeus antennatus) off Balearic Islands (western Mediterranean). Available annual catch per unit effort, recruitment and spawning stock biomass have been used as biological data. As environmental data, the meso-scale IDEA index and the large-scale North Atlantic Oscillation (NAO) and Mediterranean Oscillation (MO) indices have been used. To analyze possible links between these indices with the population dynamics of demersal resources, two non-linear approaches have been applied: (i) stock-recruitment relationships from Ricker and Beverton-Holt models, by sequentially incorporating environment factors; (ii) generalized additive modelling, both classical general and threshold non-additive models were considered. The latter simulate an abrupt change in explicative variables across different phases (time periods or climatic index values). The results have shown that two oceanographic scenarios around the Balearic Islands, associated with macro and meso-scale climate regimes, can influence the population dynamics of hake and red shrimp. This is especially true for recruitment, which seems to be enhanced during low NAO and IDEA indices periods. During these periods, colder-than-normal winters generate high amounts of cold Western Mediterranean Intermediate Waters (WIW) in the Gulf of Lions, which flow southwards and reach the Balearic Islands channels in spring, increasing the productivity in the area. This oceanographic scenario could also be favourable to the distribution of hake on the fishing grounds where the trawl fleet targets this species, increasing its accessibility to the fishery. Both spawning stock and abundance of red shrimp seems to be also enhanced by high MO index periods, which could reflect the increased presence of the saline and warm Levantine

  9. Ontogenetic variation in the body stoichiometry of two fish species.

    PubMed

    Boros, Gergely; Sály, Péter; Vanni, Michael J

    2015-10-01

    One of the central questions of ecological stoichiometry theory is to what extent animal species maintain constant elemental composition in their bodies. Although several recent studies demonstrate intraspecific variation in animal elemental composition, relatively little is known about ontogenetic changes in vertebrates, especially during early life stages. We studied the intraspecific and interspecific ontogenetic variation in the body stoichiometry of two fish species in two different orders; fathead minnow (Pimephales promelas) and sheepshead minnow (Cyprinodon variegatus), reared under controlled laboratory conditions. During ontogeny, we measured the chemical composition of fish bodies, including carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), and ribonucleic acid (RNA) contents. We found that N and RNA contents were relatively high in early life stages and declined substantially during development. In contrast, body C and C:N ratios were relatively low in embryos, post-embryos and larvae, and increased remarkably thereafter. Concentrations and ratios of some elements (e.g., Ca, P, Ca:P) did not exhibit consistent ontogenetic trends, but fluctuated dynamically between consecutive developmental stages in both species. Specific growth rates correlated significantly with RNA contents in both species. Analyses of the relative importance of different P pools at each developmental stage revealed that RNA was a considerable P pool in post-embryos, while bone-associated P was the dominant body P pool in later stages. Our results suggest that the elemental composition of fish bodies changes considerably during ontogeny. Each ontogenetic stage has its own stoichiometric signature, but the timing, magnitude and direction of ontogenetic changes can vary substantially between taxa.

  10. Place versus response learning in fish: a comparison between species.

    PubMed

    McAroe, Claire L; Craig, Cathy M; Holland, Richard A

    2016-01-01

    Place learning is thought to be an adaptive and flexible facet of navigation. Due to the flexibility of this learning, it is thought to be more complex than the simpler strategies such as learning a particular route or navigating through the use of cues. Place learning is crucial in a familiar environment as it allows an individual to successfully navigate to the same endpoint, regardless of where in the environment the journey begins. Much of the research to date focusing on different strategies employed for navigation has used human subjects or other mammals such as rodents. In this series of experiments, the spatial memory of four different species of fish (goldfish, killifish, zebrafish and Siamese fighting fish) was analysed using a plus maze set-up. Results suggest that three of the species showed a significant preference for the adoption of a place strategy during this task, whereas zebrafish showed no significant preference. Furthermore, zebrafish took significantly longer to learn the task than the other species. Finally, results suggest that zebrafish took the least amount of time (seconds) to complete trials both during training and probe. PMID:26385107

  11. Species-specific patterns of hyperostosis in marine teleost fishes

    USGS Publications Warehouse

    Smith-Vaniz, William F.; Kaufman, L.S.; Glowacki, J.

    1995-01-01

    The occurrence of swollen or hyperostotic bones in skeletal preparations, preserved museum material or whole fresh specimens of marine teleost fishes was identified in 92 species belonging to 22 families. Patterns of hyperostotic skeletal growth were typically consistent and often species-specific in all individuals larger than a certain size. The taxonomic distribution of hyperostosis in diverse phylogenetic groups suggests that it has arisen independently many times. Selected bones from two species of the family Carangidae, horse-eye jack Caranx latus Agassiz and crevalle jackCaranx hippos (Linnaeus), were examined in detail by light and electron microscopy. Nonhyperostotic bone contained osteoid-producing osteoblasts, resorbing osteoclasts, occasional osteocytes, and a rich vascular network, all characteristics of cellular bone. Thus, these fishes have a spatial juxtaposition of cellular and acellular bone tissues in adjacent and often serially homologous bone sites. The functional significance of hyperostosis is unknown, but it is a predictable manifestation of bone growth and development for the many taxa in which it occurs.

  12. Habitat characteristics as determinant of the structure and spatial distribution of epibenthic and demersal communities of Le Danois Bank (Cantabrian Sea, N. Spain)

    NASA Astrophysics Data System (ADS)

    Sánchez, F.; Serrano, A.; Parra, S.; Ballesteros, M.; Cartes, J. E.

    2008-07-01

    The purpose of this paper is to detect and describe general trends in the spatial distribution of epibenthic and demersal communities of Le Danois Bank (El Cachucho) in relation to the environmental variables that characterize their habitat by means of multivariate ordination. Data were derived from two multidisciplinary surveys carried out in October 2003 and April 2004 included in the ECOMARG project. The surveys were focused on the study of the physical scenario, including both geological (seabed characterization from bathymetry and backscatter data) and hydrographic features, and the different compartments of the benthic fauna (endobenthic, epibenthic, suprabenthic and demersal communities). For the present study, epibenthos and demersal species were sampled using two different gears, a 3.5 m beam trawl and a Porcupine 39/52 type baca otter trawl respectively. The total species richness combining both samplers ascended to 221, including 71 species of fishes, 65 crustaceans, 35 molluscs, 29 echinoderms, 10 cnidarians and 5 sponges. Multivariate methods were used for the study of the characteristics of communities and habitats. Hierarchical cluster analysis was applied to calculate and visualize similarities between samples in terms of species composition. To assess the amount of variation of faunal densities related to a set of eight environmental variables, a redundancy analysis (RDA) was used. The set of environmental variables used were: depth, near-bottom temperature and salinity, sedimentary typology (dry weight percentages of coarse sands, medium and fine sands, silt and organic matter) and seafloor reflectivity. Using the spatial distribution of the ranges of depth and seafloor reflectivity that characterize the habitats of the faunal assemblages we defined the spatial distribution of the different communities. The multivariate analysis of 18 beam-trawl samples and 15 otter trawl samples showed the existence of 4 main assemblages associated with the more

  13. Diversity of the skin microbiota of fishes: evidence for host species specificity.

    PubMed

    Larsen, Andrea; Tao, Zhen; Bullard, Stephen A; Arias, Covadonga R

    2013-09-01

    Skin microbiota of Gulf of Mexico fishes were investigated by ribosomal internal spacer analysis (RISA) and 16S rRNA gene sequencing. A total of 102 fish specimens representing six species (Mugil cephalus, Lutjanus campechanus, Cynoscion nebulosus, Cynoscion arenarius, Micropogonias undulatus, and Lagodon rhomboides) were sampled at regular intervals throughout a year. The skin microbiota from each individual fish was analyzed by RISA and produced complex profiles with 23 bands on average. Similarities between RISA profiles ranged from 97.5% to 4.0%. At 70% similarity, 11 clusters were defined, each grouping individuals from the same fish species. Multidimensional scaling and analysis of similarity correlated the RISA-defined clusters with geographic locality, date, and fish species. Global R values indicated that fish species was the most indicative variable for group separation. Analysis of 16S rRNA gene sequences (from pooled samples of 10 individual fish for each fish species) showed that the Proteobacteria was the predominant phylum in skin microbiota, followed by the Firmicutes and the Actinobacteria. The distribution and abundance of bacterial sequences were different among all species analyzed. Aeribacillus was found in all fish species representing 19% of all clones sequenced, while some genera were fish species-specific (Neorickettsia in M. cephalus and Microbacterium in L. campechanus). Our data provide evidence for the existence of specific skin microbiota associated with particular fish species.

  14. Inventory of marine and estuarine fishes in southeast and central Alaska National Parks

    USGS Publications Warehouse

    Arimitsu, M.L.; Litzow, M.A.; Piatt, J.F.; Robards, M.D.; Abookire, A.A.; Drew, G.S.

    2003-01-01

    As part of a national inventory program funded by the National Park Service, we conducted an inventory of marine and estuarine fishes in Glacier Bay National Park and Preserve, Wrangell-St. Elias National Park and Preserve, Sitka National Historical Park, and Klondike Gold Rush National Historical Park in 2001 and 2002. In addition, marine fish data from a previous project that focused on forage fishes and marine predators during 1999 and 2000 in Glacier Bay proper were compiled for this study. Sampling was conducted with modified herring and Isaacs-Kidd midwater trawls, a plumb staff beam trawl, and beach seines. Species lists of relative abundance were generated for nearshore fishes in all parks, and for demersal and pelagic fishes in Glacier Bay National Park and Preserve and Wrangell-St. Elias National Park and Preserve. With a total sampling effort of 531 sets, we captured 100 species in Glacier Bay National Park and Preserve, 31 species in Wrangell-St. Elias National Park and Preserve, 23 species in Sitka National Historical Park, and 11 species in Klondike Gold Rush National Historical Park. We estimated that between 59 and 85 percent of the total marine fish species present were sampled by us in the various habitat-park units. We also combined these data with historical records and prepared an annotated species list of 160 marine and estuarine fishes known to occur in Glacier Bay National Park and Preserve. Shannon-Wiener diversity index and catch per unit effort were used to assess the effects of depth and latitude (distance from tidewater glaciers) on marine fish community ecology in Glacier Bay proper. Our findings suggest that demersal fishes are more abundant and diverse with increased distance from tidewater glaciers, and that pelagic fishes sampled deeper than 50 m are more abundant in areas closer to tidewater glaciers. Fish, Marine, Estuarine, National Parks, Southeast Alaska, Central Alaska, Inventory, Monitoring, Diversity, Abundance, Glacier Bay

  15. Demographic modeling of selected fish species with RAMAS

    SciTech Connect

    Saila, S.; Martin, B.; Ferson, S.; Ginzburg, L.; Millstein, J. )

    1991-03-01

    The microcomputer program RAMAS 3 developed for EPRI, has been used to model the intrinsic natural variability of seven important fish species: cod, Atlantic herring, yellowtail flounder, haddock, striped bass, American shad and white perch. Demographic data used to construct age-based population models included information on spawning biology, longevity, sex ratio and (age-specific) mortality and fecundity. These data were collected from published and unpublished sources. The natural risks of extinction and of falling below threshold population abundances (quasi-extinction) are derived for each of the seven fish species based on measured and estimated values for their demographic parameters. The analysis of these species provides evidence that including density-dependent compensation in the demographic model typically lowers the expected chance of extinction. This is because if density dependence generally acts as a restoring force it seems reasonable to conclude that models which include density dependence would exhibit less fluctuation than models without compensation since density-dependent populations experience a pull towards equilibrium. Since extinction probabilities are determined by the size of the fluctuation of population abundance, models without density dependence will show higher risks of extinction, given identical circumstances. Thus, models without compensation can be used as conservative estimators of risk, that is, if a compensation-free model yields acceptable extinction risk, adding compensation will not increase this risk. Since it is usually difficult to estimate the parameters needed for a model with compensation, such conservative estimates of the risks of extinction based on a model without compensation are very useful in the methodology of impact assessment. 103 refs., 19 figs., 10 tabs.

  16. Distribution of relatively rare demersal elasmobranchs in the eastern Mediterranean

    NASA Astrophysics Data System (ADS)

    Tserpes, George; Maravelias, Christos D.; Pantazi, Maria; Peristeraki, Panagiota

    2013-01-01

    A time series of data for the demersal elasmobranchs Mustelus mustelus, Raja asterias, Torpedo marmorata and Galeus melastomus obtained from the "MEDITS" experimental surveys carried out in the Aegean Sea from 1998 to 2008 were examined to identify depth preferences, together with the spatial and temporal distribution pattern of the species. Survey data have been modelled by means of Generalized Additive Models (GAMs), as functions of depth, sampling position (latitude-longitude interaction) and year. Both depth and geographical coordinates were the key determinants of the presence of all species, while annual abundance fluctuations were found to be either insignificant or without any specific trend. The depth distribution patterns differed between species. M. mustelus, and T. marmorata, were more frequent in continental shelf areas (up to 180-200 m). R. asterias preferred the transitional depth zone between shelf and slope (around 200 m), while depths over 350 m (continental slope) favoured the presence of G. melastomus. Model predictions were used to generate density distributions maps, which could facilitate conservation plans in the area through the identification of abundance hotspots.

  17. Behaviour of fish by-catch in the mouth of a crustacean trawl.

    PubMed

    Queirolo, D; Gaete, E; Montenegro, I; Soriguer, M C; Erzini, K

    2012-06-01

    The behaviour of fish by-catch was recorded and characterized by in situ observations in the mouth of a crustacean trawl using an underwater camera system with artificial light, at depths between 106 and 461 m, along the central coast of Chile. The groups or species studied were rattails (family Macrouridae), Chilean hake Merluccius gayi gayi, sharks (orders Carcharhiniformes and Squaliformes), skates (family Rajidae), flatfishes (genus Hippoglossina) and small benthopelagic and demersal fishes (orders Osmeriformes, Stomiiformes, Gadiformes, Ophidiiformes and Perciformes). The fish behaviour was categorized in terms of (1) position in the water column, (2) initial orientation with respect to the trawl, (3) locomotion and (4) swimming speed with respect to the trawl. Rattails, sharks, skates and flatfishes were passive in response to the trawl and showed similar behavioural patterns, with most fishes observed sitting or touching the bottom with no swimming or other activity. Merluccius gayi gayi was the most active species, displaying a wide combination of behavioural responses when the trawl approached. This species showed several behavioural patterns, mainly characterized by swimming forward at variable speed. A fraction of small bentho-pelagic and demersal fishes also showed an active behaviour but always at lower speed than the trawl. The species-specific differences in behaviour in the mouth of the trawl suggest that improvements at the level of the footrope can be made to reduce by-catch, especially of passive species.

  18. Mercury pollution in fish from South China Sea: levels, species-specific accumulation, and possible sources.

    PubMed

    Liu, Jinling; Xu, Xiangrong; Yu, Shen; Cheng, Hefa; Hong, Yiguo; Feng, Xinbin

    2014-05-01

    Both total mercury (THg) and methylmercury (MeHg) levels in fish collected from South China Sea (SCS) were studied to understand Hg pollution in Chinese tropical marine ecosystems. The average THg concentrations in fish species ranged from 39.6 μg/kg for rabbitfish (Siganus fuscessens) to 417 μg/kg for thornfish (Terapon jarbua), while those of MeHg varied from 13 μg/kg (rabbitfish) to 176 μg/kg (thornfish). The median values of MeHg/THg ratios in different fish species ranged from 36 to 85%. Significant inter-species differences of THg and MeHg in fish were observed due to feeding habits and fish sizes. Overall, carnivorous fish had higher levels of THg, MeHg and MeHg/THg ratios than omnivorous and herbivorous fish. High Hg levels in fish of the SCS were probably related to Hg input from atmospheric deposition and anthropogenic activities.

  19. Fish is Fish: the use of experimental model species to reveal causes of skeletal diversity in evolution and disease

    PubMed Central

    Harris, M. P.; Henke, K.; Hawkins, M. B.; Witten, P. E.

    2014-01-01

    Summary Fishes are wonderfully diverse. This variety is a result of the ability of ray-finned fishes to adapt to a wide range of environments, and has made them more specious than the rest of vertebrates combined. With such diversity it is easy to dismiss comparisons between distantly related fishes in efforts to understand the biology of a particular fish species. However, shared ancestry and the conservation of developmental mechanisms, morphological features and physiology provide the ability to use comparative analyses between different organisms to understand mechanisms of development and physiology. The use of species that are amenable to experimental investigation provides tools to approach questions that would not be feasible in other ‘non-model’ organisms. For example, the use of small teleost fishes such as zebrafish and medaka has been powerful for analysis of gene function and mechanisms of disease in humans, including skeletal diseases. However, use of these fish to aid in understanding variation and disease in other fishes has been largely unexplored. This is especially evident in aquaculture research. Here we highlight the utility of these small laboratory fishes to study genetic and developmental factors that underlie skeletal malformations that occur under farming conditions. We highlight several areas in which model species can serve as a resource for identifying the causes of variation in economically important fish species as well as to assess strategies to alleviate the expression of the variant phenotypes in farmed fish. We focus on genetic causes of skeletal deformities in the zebrafish and medaka that closely resemble phenotypes observed both in farmed as well as natural populations of fishes. PMID:25221374

  20. Molecular identification, morphological characterization and new insights into the ecology of larval Pseudoterranova cattani in fishes from the Argentine coast with its differentiation from the Antarctic species, P. decipiens sp. E (Nematoda: Anisakidae).

    PubMed

    Timi, Juan T; Paoletti, Michela; Cimmaruta, Roberta; Lanfranchi, Ana L; Alarcos, Ana J; Garbin, Lucas; George-Nascimento, Mario; Rodríguez, Diego H; Giardino, Gisela V; Mattiucci, Simonetta

    2014-01-17

    . decipiens sp. E, indicating that larval forms can be distinguished based on their morphology. Pseudoterranova cattani is common and abundant in a variety of fish species from Chile, whereas few host species harbour these larvae in Argentina where they show low levels of parasitism. This pattern could arise from a combination of factors, including environmental conditions, density and dietary preferences of definitive hosts and life-cycle pathways of the parasite. Finally, this study revealed that the life-cycle of P. cattani involves mainly demersal and benthic organisms, with a marked preference by large-sized benthophagous fish. PMID:24161261

  1. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  2. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  3. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  4. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  5. 78 FR 18273 - Draft Guidance for Industry on Purchasing Reef Fish Species Associated With the Hazard of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-26

    ... Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning; Availability AGENCY: Food and...: Purchasing Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning.'' The draft guidance, when finalized, will advise primary seafood processors who purchase reef fish how to minimize the...

  6. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  7. Fish allergy in patients with parvalbumin-specific immunoglobulin E depends on parvalbumin content rather than molecular differences in the protein among fish species.

    PubMed

    Kobayashi, Ayako; Kobayashi, Yukihiro; Shiomi, Kazuo

    2016-10-01

    Allergenic characteristics of purified parvalbumins from different fish species have not been thoroughly investigated. We revealed that purified parvalbumins from nine different fish species have identical IgE-reactivities and high cross-reactivities. We also showed that fish allergenicity is associated with the parvalbumin content of the fish species, rather than species-specific differences in the molecular characteristics of the individual parvalbumin proteins. PMID:27251554

  8. Abundances of demersal sharks and chimaera from 1994-2009 scientific surveys in the central Mediterranean Sea.

    PubMed

    Ragonese, Sergio; Vitale, Sergio; Dimech, Mark; Mazzola, Salvatore

    2013-01-01

    Bibliographic and data gathered in scientific bottom trawl surveys carried out off the Southern Coasts of Sicily (Mediterranean Sea), from 1994 to 2009 and between a depth of 10 and 800 m, were analysed in order to prepare a checklist of demersal sharks and chimaera, which are species sensitive to fisheries exploitation. Out of the 27 previously reported demersal shark and chimaera taxa in the Mediterranean, only 23 were found in literature and 20 sampled during the surveys in the investigated area. Among the species sampled in the surveys, only 2 ubiquitous (Squalusblainville and Scyliorhinuscanicula) and 3 deep-water (Chimaeramonstrosa , Centrophorusgranulosus and Galeusmelastomus) species showed a wide geographical distribution with a consistent abundance. Excluding the rare (such as Oxynotuscentrina) or uncommon shark (e.g. Squalusacanthias), the estimated frequencies of occurrence and abundance indexes show a possible risk of local extinction for the almost exclusively (e.g. angelshark, Squatina spp.) or preferential (e.g. Scyliorhinusstellaris) neritic species.

  9. Abundances of Demersal Sharks and Chimaera from 1994-2009 Scientific Surveys in the Central Mediterranean Sea

    PubMed Central

    Ragonese, Sergio; Vitale, Sergio; Dimech, Mark; Mazzola, Salvatore

    2013-01-01

    Bibliographic and data gathered in scientific bottom trawl surveys carried out off the Southern Coasts of Sicily (Mediterranean Sea), from 1994 to 2009 and between a depth of 10 and 800 m, were analysed in order to prepare a checklist of demersal sharks and chimaera, which are species sensitive to fisheries exploitation. Out of the 27 previously reported demersal shark and chimaera taxa in the Mediterranean, only 23 were found in literature and 20 sampled during the surveys in the investigated area. Among the species sampled in the surveys, only 2 ubiquitous (Squalusblainville and Scyliorhinuscanicula) and 3 deep-water (Chimaeramonstrosa, Centrophorusgranulosus and Galeusmelastomus) species showed a wide geographical distribution with a consistent abundance. Excluding the rare (such as Oxynotuscentrina) or uncommon shark (e.g. Squalusacanthias), the estimated frequencies of occurrence and abundance indexes show a possible risk of local extinction for the almost exclusively (e.g. angelshark, Squatina spp.) or preferential (e.g. Scyliorhinusstellaris) neritic species. PMID:24086386

  10. [Species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China].

    PubMed

    Zhang, Qian; Zhong, Jin-Xin

    2013-05-01

    Based on the related published papers, and by using Geographic Information System (ArcGIS 9.3), this paper analyzed the species composition and geographical distribution of threatened fishes in Yunnan Province of Southwest China. There were 83 threatened species living in the Province, belonging to 5 orders, 13 families, and 47 genera. Cypriniformes was absolutely dominant, with 64 species, followed by Siluriformes, with 16 species. Cyprinidae fishes had 51 species, accounting for 79.7% of Cypriniformes. The most species of Cyprinid fishes were of Barbinae (14 species), Cyprininae (10 species), and Cultrinae (10 species). The threatened fishes could be divided into two zoogeographical regions, i. e., Tibetan Plateau region and Oriental region, and their species composition and geographical distribution were resulted from the historical evolution adapted to the related environments. Whatever in rivers and in lakes, the Cyprinid fishes were both absolutely dominant, occupying 36.1% and 31.3% of the total, respectively. The Cyprinid fishes in rivers were mostly of endangered species, while those in lakes were mostly of vulnerable species. The factors affecting the threatened fishes in the Province were discussed from the two aspects of geodynamic evolution and present situation.

  11. Nutritional and lipid profiles in marine fish species from Brazil.

    PubMed

    Fernandes, Carolina Estevam; Vasconcelos, Margarida Angélica da Silva; Ribeiro, Marisilda de Almeida; Sarubbo, Leonie Asfora; Andrade, Samara Alvachian Cardoso; Filho, Artur Bibiano de Melo

    2014-10-01

    Centesimal composition and lipid profiles were evaluated in muscle tissue of four species of Brazilian fish using the Kjeldahl and Bligh & Dyer gravimetric methods and gas chromatography, respectively. The moisture, protein, total lipid, and ash values (g/100g) ranged from 71.13 to 78.39; 18.10 to 19.87; 1.05 to 9.03; and 1.03 to 1.73, respectively. Palmitic acid was prevalent among the saturated fatty acids (10.89-20.38%) and oleic acid was the main monounsaturated acid identified (4.26-15.77%). The eicosapentaenoic-EPA (6.41-10.66%) and docosahexaenoic-DHA (9.12-30.20%) acids were the most prevalent polyunsaturated acids. The average values, which are indicative of nutritional quality, were: Polyunsaturated/saturated (P/S) (1.11-1.47), ω6/ω3 (0.08-0.21), hypocholesterolemic/hypercholesterolemic acid ratios (HH) (0.87-2.43), atherogenicity index (IA) (0.26-0.60), and thrombogenicity index (IT) (0.20-0.44). These results demonstrated that the lipid profiles of the studied species are of nutritional quality.

  12. Future fish distributions constrained by depth in warming seas

    NASA Astrophysics Data System (ADS)

    Rutterford, Louise A.; Simpson, Stephen D.; Jennings, Simon; Johnson, Mark P.; Blanchard, Julia L.; Schön, Pieter-Jan; Sims, David W.; Tinker, Jonathan; Genner, Martin J.

    2015-06-01

    European continental shelf seas have experienced intense warming over the past 30 years. In the North Sea, fish have been comprehensively monitored throughout this period and resulting data provide a unique record of changes in distribution and abundance in response to climate change. We use these data to demonstrate the remarkable power of generalized additive models (GAMs), trained on data earlier in the time series, to reliably predict trends in distribution and abundance in later years. Then, challenging process-based models that predict substantial and ongoing poleward shifts of cold-water species, we find that GAMs coupled with climate projections predict future distributions of demersal (bottom-dwelling) fish species over the next 50 years will be strongly constrained by availability of habitat of suitable depth. This will lead to pronounced changes in community structure, species interactions and commercial fisheries, unless individual acclimation or population-level evolutionary adaptations enable fish to tolerate warmer conditions or move to previously uninhabitable locations.

  13. Species List of Alaskan Birds, Mammals, Fish, Amphibians, Reptiles, and Invertebrates. Alaska Region Report Number 82.

    ERIC Educational Resources Information Center

    Taylor, Tamra Faris

    This publication contains a detailed list of the birds, mammals, fish, amphibians, reptiles, and invertebrates found in Alaska. Part I lists the species by geographical regions. Part II lists the species by the ecological regions of the state. (CO)

  14. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES, INCLUDING INTERSPECIES TOXICITY CORRELATIONS

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accorda...

  15. Locational differences in mercury and selenium levels in 19 species of saltwater fish from New Jersey.

    PubMed

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2011-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  16. LOCATIONAL DIFFERENCES IN MERCURY AND SELENIUM LEVELS IN 19 SPECIES OF SALTWATER FISH FROM NEW JERSEY

    PubMed Central

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2014-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  17. Quantification of major allergen parvalbumin in 22 species of fish by SDS-PAGE.

    PubMed

    Kobayashi, Yukihiro; Yang, Tao; Yu, Cheng-Tao; Ume, Chiaki; Kubota, Hiroyuki; Shimakura, Kuniyoshi; Shiomi, Kazuo; Hamada-Sato, Naoko

    2016-03-01

    Fish is an important causative material of food allergy. Although the allergenicity of fish is considered to correlate with the content of parvalbumin, the major fish allergen, available information about the parvalbumin content in fish is limited. In this study, a simple and reliable quantification method for fish parvalbumin by SDS-PAGE was first established. Application of the SDS-PAGE method to 22 species of fish revealed a marked variation in parvalbumin content among fish. Furthermore, the parvalbumin content was found to be higher in dorsal white muscle than in ventral white muscle, in rostral part of white muscle than in caudal part of white muscle and in white muscle than in dark muscle. IgE reactivity of fish was roughly proportional to parvalbumin content. Interestingly, large-sized migratory fish, such as salmon, swordfish and tuna, were commonly very low in both parvalbumin content and IgE reactivity. PMID:26471564

  18. [Preparation and analysis of dehydrated mixtures of vegetables and underutilized fish species flours: I. Dehydrated mixtures of cereal-fish].

    PubMed

    Luna, G; Rey, J L; Castro, L M; Corona, N; Ferreiros, E; Luzardo, M

    1990-09-01

    For the purpose of providing possible solutions to the malnutrition problems affecting those populations where cereals and tubers form an important portion of their daily intake, products were prepared from dehydrated mixtures of cereals and under-utilized fish, but which contain high-quality protein. Two cereals were selected for our experiments: rice and corn, and a marine under-utilized fish species (Macrodon ancyclodon). The minced fish muscle recovered by mechanical deboning was mixed with the cereal, obtaining mixtures with 5%, 10% and 15% fish on a dry basis. Feeding experiments using Wistar weaning rats were then carried out to evaluate the most important characteristics. An amino acid profile which reflected high-quality protein was obtained, as evidenced by the excellent PER, NPU, NPR and digestibility values determined. The dehydrated mixtures of fish/cereal flour prepared with 5% and up to 10% fish (dry basis), did not present any odour, but as of the 15% level, fish odour was perceived. Therefore, the use of dehydrated mixtures of fish/cereal flours with up to 10% fish in preparing food products, is recommended, since these would be of great help in solving the scarcity of good-quality protein, particularly in the developing countries. PMID:2134143

  19. Conditions for coexistence of freshwater mussel species via partitioning of fish host resources

    USGS Publications Warehouse

    Rashleigh, B.; DeAngelis, D.L.

    2007-01-01

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larval stage may promote coexistence. A model of resource utilization was developed for two mussel species and analyzed to determine conditions for coexistence. Mussel species were predicted to coexist when they differed in terms of their success in contacting different fish host species; very similar strategies offered limited possibilities for coexistence. Differences in the mussel species' maximum infestation loads on the fish hosts that coincided with differences in their fish host contact success promoted coexistence. Mussel species with a given set of trade-offs in fish host use were predicted to coexist only for a subset of relative fish host abundances, so a shift in relative fish host abundances could result in the loss of a mussel species. An understanding of the conditions for freshwater mussel species coexistence can help explain high mussel diversity in rivers and guide ongoing conservation activities. ?? 2006 Elsevier B.V. All rights reserved.

  20. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species.

    PubMed

    Free, Christopher M; Jensen, Olaf P; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake's fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3-4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009-2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11-15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas.

  1. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species

    PubMed Central

    Free, Christopher M.; Jensen, Olaf P.; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake’s fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3–4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009–2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11–15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas. PMID:26625154

  2. Change in fish community structure in the Barents Sea.

    PubMed

    Aschan, Michaela; Fossheim, Maria; Greenacre, Michael; Primicerio, Raul

    2013-01-01

    Change in oceanographic conditions causes structural alterations in marine fish communities, but this effect may go undetected as most monitoring programs until recently mainly have focused on oceanography and commercial species rather than on whole ecosystems. In this paper, the objective is to describe the spatial and temporal changes in the Barents Sea fish community in the period 1992-2004 while taking into consideration the observed abundance and biodiversity patterns for all 82 observed fish species. We found that the spatial structure of the Barents Sea fish community was determined by abiotic factors such as temperature and depth. The observed species clustered into a deep assemblage, a warm water southern assemblage, both associated with Atlantic water, and a cold water north-eastern assemblage associated with mixed water. The latitude of the cold water NE and warm water S assemblages varied from year to year, but no obvious northward migration was observed over time. In the period 1996-1999 we observed a significant reduction in total fish biomass, abundance, mean fish weight, and a change in community structure including an increase in the pelagic/demersal ratio. This change in community structure is probably due to extremely cold conditions in 1996 impacting on a fish community exposed to historically high fishing rates. After 1999 the fish community variables such as biomass, abundance, mean weight, P/D ratio as well as community composition did not return to levels of the early 90s, although fishing pressure and climatic conditions returned to earlier levels.

  3. Endoparasite species richness of new caledonian butterfly fishes: host density and diet matter.

    PubMed

    Morand, S; Cribb, T H; Kulbicki, M; Rigby, M C; Chauvet, C; Dufour, V; Faliex, E; Galzin, R; Lo, C M; Lo-Yat, A; Pichelin, S; Sasal, P

    2000-07-01

    Ecological factors may influence the number of parasites encountered and, thus, parasite species richness. These factors include diet, gregarity, conspecific and total host density, habitat, body size, vagility, and migration. One means of examining the influence of these factors on parasite species richness is through a comparative analysis of the parasites of different, but related, host species. In contrast to most comparative studies of parasite species richness of fish, which have been conducted by using data from the literature, the present study uses data obtained by the investigators. Coral reef fishes vary widely in the above ecological factors and are frequently parasitized by a diverse array of parasites. We, therefore, chose to investigate how the above ecological factors influence parasite species richness in coral reef fishes. We investigated the endoparasite species richness of 21 species of butterfly fishes (Chaetodontidae) of New Caledonia. We mapped the diet characters on the existing butterfly fish phylogeny and found that omnivory appears to be ancestral. We also mapped the estimated endoparasite species richness, coded from low to high parasite species richness, on the existing butterfly fish phylogeny and found that low parasite species richness appears to be associated with the ancestral state of omnivory. Different dietary and social strategies appear to have evolved more than once, with the exception of obligate coralivory, which appears to have evolved only once. Finally, after controlling for phylogenetic relationships, we found that only the percentage of plankton in the diet and conspecific host density were positively correlated with endoparasite species richness.

  4. Stable isotope and signature fatty acid analyses suggest reef manta rays feed on demersal zooplankton.

    PubMed

    Couturier, Lydie I E; Rohner, Christoph A; Richardson, Anthony J; Marshall, Andrea D; Jaine, Fabrice R A; Bennett, Michael B; Townsend, Kathy A; Weeks, Scarla J; Nichols, Peter D

    2013-01-01

    Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different zooplankton functional groups (i.e. near-surface zooplankton collected during manta ray feeding events and non-feeding periods, epipelagic zooplankton, demersal zooplankton and several different zooplankton taxa). Stable isotope δ(15)N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic zooplankton. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ(13)C values in reef manta ray tissue suggest that they do not feed solely on pelagic zooplankton, but rather obtain part of their diet from another origin. The closest match was with demersal zooplankton, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal zooplankton is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs.

  5. Stable Isotope and Signature Fatty Acid Analyses Suggest Reef Manta Rays Feed on Demersal Zooplankton

    PubMed Central

    Couturier, Lydie I. E.; Rohner, Christoph A.; Richardson, Anthony J.; Marshall, Andrea D.; Jaine, Fabrice R. A.; Bennett, Michael B.; Townsend, Kathy A.; Weeks, Scarla J.; Nichols, Peter D.

    2013-01-01

    Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different zooplankton functional groups (i.e. near-surface zooplankton collected during manta ray feeding events and non-feeding periods, epipelagic zooplankton, demersal zooplankton and several different zooplankton taxa). Stable isotope δ15N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic zooplankton. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ13C values in reef manta ray tissue suggest that they do not feed solely on pelagic zooplankton, but rather obtain part of their diet from another origin. The closest match was with demersal zooplankton, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal zooplankton is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs. PMID:24167562

  6. Survey of parasitic fauna of different ornamental freshwater fish species in Iran.

    PubMed

    Adel, Milad; Ghasempour, Fatemeh; Azizi, Hamid Reza; Shateri, Mohamad Hadi; Safian, Ahmad Reza

    2015-01-01

    Parasitic diseases are harmful and limiting factors in breeding and rearing ornamental fish industry. In this study, 400 apparently healthy ornamental fishes from five species (each species 80 specimens) including: Goldfish (Carassius auratus), guppy (Poecilia reticulate), angelfish (Pterophyllum scalare), discus (Symphsodon discus) and sailfin mollies (Poecilia latipinna) was obtained from a local ornamental fish farm in the north of Iran during 2011 to 2012. The primary purpose of this study was to determine the parasitic infections of aquarium fish in Iran. For this purpose, fish were first examined for ectoparasites using wet mount under a light microscope. Then, the alimentary ducts of fish were observed under light and stereo microscope. In survey of different infection rates for different parasitic infections in examining fish: Dactylogyrus sp., Gyrodactylus sp., Ichthyophthirius multifiliis Trichodina reticulata, Capillaria sp. and Lernaea cyprinacea were collected from five species. All five fish species had Monogenea (Gyrodactylidae and Dactylogyridae) in their skins and gills, the highest prevalence was observed in C. auratus and the lowest was in P. scalare and S. discus. Also, Capillaria sp. was reported as a first record from the abdominal cavity of P. scalare in Iran. Our findings revealed that the protozoal infections are very common among aquarium fishes. Although, no gross pathology was observed among infected fishes, but it is likely that in case of any changes in the environment, then parasitic infections could be harmful. PMID:25992255

  7. Phytoplankton IF-FISH: Species-specific labeling of cellular proteins by immunofluorescence (IF) with simultaneous species identification by fluorescence immunohybridization (FISH).

    PubMed

    Meek, Megan E; Van Dolah, Frances M

    2016-05-01

    Phytoplankton rarely occur as unialgal populations. Therefore, to study species-specific protein expression, indicative of physiological status in natural populations, methods are needed that will both assay for a protein of interest and identify the species expressing it. Here we describe a protocol for IF-FISH, a dual labeling procedure using immunofluorescence (IF) labeling of a protein of interest followed by fluorescence in situ hybridization (FISH) to identify the species expressing that protein. The protocol was developed to monitor expression of the cell cycle marker proliferating cell nuclear antigen (PCNA) in the red tide dinoflagellate, Karenia brevis, using a large subunit (LSU) rRNA probe to identify K. brevis in a mixed population of morphologically similar Karenia species. We present this protocol as proof of concept that IF-FISH can be successfully applied to phytoplankton cells. This method is widely applicable for the analysis of single-cell protein expression of any protein of interest within phytoplankton communities.

  8. Comparative visual ecophysiology of mid-Atlantic temperate reef fishes

    PubMed Central

    Horodysky, Andrij Z.; Brill, Richard W.; Crawford, Kendyl C.; Seagroves, Elizabeth S.; Johnson, Andrea K.

    2013-01-01

    Summary The absolute light sensitivities, temporal properties, and spectral sensitivities of the visual systems of three mid-Atlantic temperate reef fishes (Atlantic spadefish [Ephippidae: Chaetodipterus faber], tautog [Labridae: Tautoga onitis], and black sea bass [Serranidae: Centropristis striata]) were studied via electroretinography (ERG). Pelagic Atlantic spadefish exhibited higher temporal resolution but a narrower dynamic range than the two more demersal foragers. The higher luminous sensitivities of tautog and black sea bass were similar to other benthic and demersal coastal mid-Atlantic fishes. Flicker fusion frequency experiments revealed significant interspecific differences at maximum intensities that correlated with lifestyle and habitat. Spectral responses of the three species spanned 400–610 nm, with high likelihood of cone dichromacy providing the basis for color and contrast discrimination. Significant day-night differences in spectral responses were evident in spadefish and black sea bass but not tautog, a labrid with characteristic structure-associated nocturnal torpor. Atlantic spadefish responded to a wider range of wavelengths than did deeper-dwelling tautog or black sea bass. Collectively, these results suggest that temperate reef-associated fishes are well-adapted to their gradient of brighter to dimmer photoclimates, representative of their unique ecologies and life histories. Continuing anthropogenic degradation of water quality in coastal environments, at a pace faster than the evolution of visual systems, may however impede visual foraging and reproductive signaling in temperate reef fishes. PMID:24285711

  9. Comparative visual ecophysiology of mid-Atlantic temperate reef fishes.

    PubMed

    Horodysky, Andrij Z; Brill, Richard W; Crawford, Kendyl C; Seagroves, Elizabeth S; Johnson, Andrea K

    2013-01-01

    The absolute light sensitivities, temporal properties, and spectral sensitivities of the visual systems of three mid-Atlantic temperate reef fishes (Atlantic spadefish [Ephippidae: Chaetodipterus faber], tautog [Labridae: Tautoga onitis], and black sea bass [Serranidae: Centropristis striata]) were studied via electroretinography (ERG). Pelagic Atlantic spadefish exhibited higher temporal resolution but a narrower dynamic range than the two more demersal foragers. The higher luminous sensitivities of tautog and black sea bass were similar to other benthic and demersal coastal mid-Atlantic fishes. Flicker fusion frequency experiments revealed significant interspecific differences at maximum intensities that correlated with lifestyle and habitat. Spectral responses of the three species spanned 400-610 nm, with high likelihood of cone dichromacy providing the basis for color and contrast discrimination. Significant day-night differences in spectral responses were evident in spadefish and black sea bass but not tautog, a labrid with characteristic structure-associated nocturnal torpor. Atlantic spadefish responded to a wider range of wavelengths than did deeper-dwelling tautog or black sea bass. Collectively, these results suggest that temperate reef-associated fishes are well-adapted to their gradient of brighter to dimmer photoclimates, representative of their unique ecologies and life histories. Continuing anthropogenic degradation of water quality in coastal environments, at a pace faster than the evolution of visual systems, may however impede visual foraging and reproductive signaling in temperate reef fishes.

  10. Species- and tissue-specific mercury bioaccumulation in five fish species from Laizhou Bay in the Bohai Sea of China

    NASA Astrophysics Data System (ADS)

    Liu, Jinhu; Cao, Liang; Huang, Wei; Dou, Shuozeng

    2013-05-01

    Mercury (Hg) concentrations in the tissues (muscle, stomach, liver, gills, skin, and gonads) of five fish species (mullet Liza ha em atocheil us, flathead fish Platycephalus indicus, sea bass Lateolabrax japonic u s, mackerel Scomberomorus niphonius and silver pomfret Pampus argenteus) collected from Laizhou Bay in the Bohai Sea of China were investigated. The results indicate that Hg bioaccumulation in the five fish was tissue-specific, with the highest levels in the muscle and liver, followed by the stomach and gonads. The lowest levels were found in the gills and skin. Fish at higher trophic levels (flathead fish and sea bass) exhibited higher Hg concentrations than consumers at lower trophic levels. Mercury bioaccumulation tended to be positively correlated with fish length in mullet, silver pomfret, mackerel, and flathead fish, but was negatively correlated with fish length in sea bass. The Hg concentrations in the muscles of all fish species in Laizhou Bay were within the permissible limits of food safety set by national and international criteria. However, the suggesting maximum consumption of sea bass is 263 g per week for human health.

  11. Fish status survey of Nordic lakes: effects of acidification, eutrophication and stocking activity on present fish species composition.

    PubMed

    Tammi, Jouni; Appelberg, Magnus; Beier, Ulrika; Hesthagen, Trygve; Lappalainen, Antti; Rask, Martti

    2003-03-01

    The status of fish populations in 3821 lakes in Norway, Sweden and Finland was assessed in 1995-1997. The survey lakes were chosen by stratified random sampling from all (126 482) Fennoscandian lakes > or = 0.04 km2. The water chemistry of the lakes was analyzed and information on fish status was obtained by a postal inquiry. Fish population losses were most frequent in the most highly acidified region of southern Norway and least common in eastern Fennoscandia. According to the inquiry results, the number of lost stocks of brown trout (Salmo trutta), roach (Rutilus rutilus), Arctic char (Salvelinus alpinus) and perch (Perca fluviatilis) was estimated to exceed 10000. The number of stocks of these species potentially affected by the low alkalinity of lake water was estimated to exceed 11000. About 3300 lakes showed high total phosphorus (> 25 microg L(-1)) and cyprinid dominance in eastern Fennoscandia, notably southwestern Finland. This survey did not reveal any extinction of fish species due to eutrophication. One-third of the lakes had been artificially stocked with at least one new species, most often brown trout, whitefish (Coregonus lavaretus s.l.), Arctic char, rainbow trout (Oncorhynchus mykiss), pike-perch (Stizostedion lucioperca), grayling (Thymallus thymallus), pike (Esox lucius), bream (Abramis brama), tench (Tinca tinca) and European minnow (Phoxinus phoxinus). The number of artificially manipulated stocks of these species in Fennoscandian lakes was estimated to exceed 52000. Hence, the number of fish species occurring in Nordic lakes has recently been changed more by stockings than by losses of fish species through environmental changes such as acidification.

  12. Comparative toxicity of 3-trifluormethyl-4-nitrophenol (TFM) to larval lampreys and eleven species of fishes

    USGS Publications Warehouse

    Applegate, Vernon C.; King, Everett L.

    1962-01-01

    The tolerances of larval lampreys, rainbow trout, and 10 species of warmwater fishes to 3-trifluormethyl-4-nitrophenol (TFM), a selective lamprey larvicide, were determined in three dilution waters of different physical and chemical characteristics. Differential toxic effects of the chemical to larval lampreys and test fishes varied broadly with the species of fish. Smallmouth bass and other centrarchids were most tolerant of the chemical; walleye, yellow perch, bullheads, and white suckers were most susceptible. The toxicity of TFM to both lampreys and fishes diminished as the conductivity and alkalinity of the dilution water increased. The differential action of the chemical was retained in all waters, however.

  13. Presence and absence of non-native fish species in the Wet Tropics region, Australia.

    PubMed

    Kroon, F; Phillips, S; Burrows, D; Hogan, A

    2015-03-01

    Distributional records of non-native fish species were identified in the Wet Tropics region, Far North Queensland, Australia, through a compilation of published records and expert knowledge. A total of 1106 records were identified comprising 346 presence and four uncertain records for at least 13 species, and 756 absence records. All current presence records consist of six species from the families Cichlidae and Poeciliidae with established self-sustaining populations in the region, probably affecting the highly diverse native fish fauna.

  14. Matching genetics with oceanography: directional gene flow in a Mediterranean fish species.

    PubMed

    Schunter, C; Carreras-Carbonell, J; Macpherson, E; Tintoré, J; Vidal-Vijande, E; Pascual, A; Guidetti, P; Pascual, M

    2011-12-01

    Genetic connectivity and geographic fragmentation are two opposing mechanisms determining the population structure of species. While the first homogenizes the genetic background across populations the second one allows their differentiation. Therefore, knowledge of processes affecting dispersal of marine organisms is crucial to understand their genetic distribution patterns and for the effective management of their populations. In this study, we use genetic analyses of eleven microsatellites in combination with oceanographic satellite and dispersal simulation data to determine distribution patterns for Serranus cabrilla, a ubiquitous demersal broadcast spawner, in the Mediterranean Sea. Pairwise population F(ST) values ranged between -0.003 and 0.135. Two genetically distinct clusters were identified, with a clear division located between the oceanographic discontinuities at the Ibiza Channel (IC) and the Almeria-Oran Front (AOF), revealing an admixed population in between. The Balearic Front (BF) also appeared to dictate population structure. Directional gene flow on the Spanish coast was observed as S. cabrilla dispersed from west to east over the AOF, from north to south on the IC and from south of the IC towards the Balearic Islands. Correlations between genetic and oceanographic data were highly significant. Seasonal changes in current patterns and the relationship between ocean circulation patterns and spawning season may also play an important role in population structure around oceanographic fronts.

  15. Experimental study to control the upstream migration of invasive alien fish species by submerged weir

    NASA Astrophysics Data System (ADS)

    Sakuma, Masami; Kunimatsu, Fumihiro; Tsuchiya, Taku; Kawamura, Makiko; Fujita, Hiroshi

    Largemouth bass and Bluegill, major invasive alien fish species in Japan, have been extending their habitat ranges over not only Lake Biwa and the lagoons but also surrounding waters connected to them through small rivers and canals. Their increasing number is bringing about the reduction in the number of native fish species. To prevent the spread of these alien species through small rivers and canals during breeding season of the native fish (crucian carp), this study experimentally examined the effect of a submerged weir on controlling upstream migration of the alien species and the native fish. As a result of the experiment, the ratio of the alien species migrating upstream decreased as the weir height rose, whereas the ratio did not show the same trend in the case of the native fish. The ratio of the alien species also decreased as the overflow velocity over the weir rose. On the other hand, the ratio of the native fish increased as the overflow velocity rose up to 1.0m/s and decreased thereafter. These results suggest that the submerged weir may control upstream migration of the alien species to surrounding waters through small rivers and canals without interfering with the reproductive migration of the native fish.

  16. Accumulation features of arsenic species in various fishes collected from coastal cities in Korea

    NASA Astrophysics Data System (ADS)

    Choi, Sung-Deuk; Son, Hee-Sik; Choi, Minkyu; Park, Min-Kyu

    2015-12-01

    In this study, 36 fish species were collected from three coastal cities in Korea to investigate levels and patterns of six arsenicals (arsenite: As (III), arsenate: As (V), arsenocholine: AsC, arsenobetaine: AsB, monomethylarsonic acid: MMA, and dimethylarsinic acid: DMA). The levels of ∑6 As in the different fish species varied substantially, ranging from 0.02 μg As/g ww (Islaeli carp) to 9.65 μg As/g ww (Skate ray) with a median of 0.40 μg As/g ww. All the arsenicals in marine fishes showed higher levels than those in freshwater fishes due to fish feed living in saline water. Overall, marine carnivorous fishes seem to be more contaminated with arsenic. For all the fish samples, AsB (mean fraction: 90.6%) was dominant among the six arsenicals, indicating biomethylation of inorganic arsenic and accumulation of AsB. Fish species with high water contents showed elevated levels of As (III), but there was no further significant correlations between arsenicals and water/lipid contents. Concentrations of As (V) were significantly lower than those of As (III), which implies that As (V) is reduced during biomethylation of inorganic arsenic. Consequently, we hypothesize that the toxicity of arsenic (mainly derived from As (III)) can be increased by the reduction of As (V), especially for the fish species with higher water contents.

  17. Commercial fish species of inland waters: a model for sustainability assessment and management.

    PubMed

    Simić, Vladica M; Simić, Snežana B; Stojković Piperac, Milica; Petrović, Ana; Milošević, Djuradj

    2014-11-01

    The permanent increase in the exploitation of commercial fish species has led to the need for developing practical and effective tools for the sustainability assessment and management of the target fish populations. The aim of this study was to formulate an ESHIPPOfishing model which would provide a reliable assessment of commercial fish population sustainability and indicate the conservation priorities. The existing ESHIPPO model was modified by introducing a new Index of local sustainability of fish populations (ILSFP) which enables the selection of "keystone populations" and "keystone habitats/ecosystems" within the basin being investigated. We employed a self-organizing map (SOM) in order to visualize the spatial distribution of the keystone populations and keystone habitats/ecosystems for each fish species. Based on the ILSFP values, environmental specialization (ES) of a fish species and local environmental factors (HIPPO factors), the model estimates the degree of sustainability (DS) of commercial fish populations in the freshwater ecosystems of the western Balkan Peninsula. The results indicate a low degree of sustainability for the majority of commercial fish species of the Middle Danube Basin, especially Acipenser ruthenus and Hucho hucho. The ESHIPPOfishing model presents a cost effective conservation approach, formulated to be applicable to any kind of river basin. The application of the ESHIPPOfishing model provides a comprehensive insight into the viability of target fish populations, which would not only further improve the selection of conservation priorities, but also facilitate the management of aquatic ecosystems.

  18. Species-specific preferences of German recreational anglers for freshwater fishing experiences, with emphasis on the intrinsic utilities of fish stocking and wild fishes.

    PubMed

    Arlinghaus, R; Beardmore, B; Riepe, C; Meyerhoff, J; Pagel, T

    2014-12-01

    To answer the question, whether anglers have an intrinsic preference for stocking or a preference for catch outcomes (e.g. catch rates) believed to be maintained by stocking, a discrete choice experiment was conducted among a sample of anglers (n = 1335) in Lower Saxony, Germany. After controlling for catch aspects of the fishing experience, no significant influence of two stocking attributes (stocking frequency and composition of the catch in terms of wild v. hatchery fishes) on the utility gained from fishing was found for any of the freshwater species that were studied. It was concluded that the previously documented large appreciation of fish stocking by anglers may be indicative of an underlying preference for sufficiently high catches rather than reflect an intrinsic preference for stocking or the catching of wild fishes per se.

  19. Evaluation of remote-sensing-based potential fishing zones (PFZs) forecast methodology

    NASA Astrophysics Data System (ADS)

    Solanki, H. U.; Mankodi, P. C.; Nayak, S. R.; Somvanshi, V. S.

    2005-11-01

    Satellite-based potential fishing zones (PFZs) forecasts were generated using integration of Ocean Colour Monitor (OCM) derived chlorophyll concentration and Advanced Very High Resolution Radiometer (AVHRR) derived sea surface temperatures (SST). Validation of the PFZ forecasts was carried out during seasons 1999-2000, 2000-2001 and 2001-2002 using Fishery Survey of India vessels. Bottom trawl catches were composed of mixed species from different habitats, i.e. demersal and pelagic. Hence, there is a need to understand the application of satellite-derived PFZs to different species types of fishery resources. The per cent contribution by species was determined from 30 m to 100 m depth range. Those species contributing 5 kg/haul and above were considered as a significant species. Species-wise catch per unit effort (CPUE), seasonal mean CPUE and standard deviation (SD) were computed for remotely sensed PFZs and the entire region. Species-wise comparisons were made between mean CPUE in PFZs and seasonal mean CPUE in other areas from a different habitat. It was observed that fishery resource of pelagic and water column habitats contributed fairly well as compared to the demersal resources in PFZs. The per cent contribution of pelagic and water column species were found more in PFZs catch as compared to the seasonal mean catch in other areas. In this study, diet composition and feeding habitat of fishes and its relationship to satellite-derived parameters have been evaluated.

  20. [Seasonal changes of fish species composition and diversity in mudflat wetlands of Hangzhou Bay].

    PubMed

    Jia, Xing-huan; Zhang, Heng; Jiang, Ke-yi; Wu, Ming

    2010-12-01

    In order to understand the spatiotemporal variation of fish species composition and biodiversity in the mudflat wetlands of Hangzhou Bay, thirty six surveys were conducted in the mudflat area, inning area, and aquaculture area in the south bank of the Bay in. March (early spring), May (spring), July (summer), and October (autumn), 2009. A total of 41 species belonging to 9 orders and 16 families were observed, among which, Cyprinid had the largest species number (14 species, 33.3% of the total), followed by Gobiidae (8 species, 19.1%). According to the lifestyle of fish, these 41 species could be divided into five ecological types, i.e., freshwater type (21 species), brackish-water type (16 species), inshore type (2 species), anadromous type (Coilia ectenes), and catadromios type (Anguilla japonica). The fish abundance was the highest (54. 5 fish per net) in summer, followed by in spring and autumn, and the lowest (17.7 fish per net) in early spring. In the three habitats, mudflat area and inning area had the similar seasonal change of fish abundance, i.e., the lowest in early spring, the highest in summer, and then decreased in autumn. Only two or three species were the dominant species in different seasons. In mudflat area, the dominant species were Mugil cephalus and Liza carinatus; while in inning and aquaculture areas, the dominant species were Carassius auratus, Hemiculter leucisculus, and Pseudorasbora parva. The values of Margalef's richness index (D), Pielou's evenness index (J), and Shannon index (H) were lower in March than in other months, but had no significant differences among May, July, and October (P > 0.05). The H value ranged in 0. 27-2. 13, being the lowest in March and higher in May and October (1.66 and 1.63, respectively). Overall, the fish abundance and biodiversity in the mudflat wetlands of Hangzhou Bay had apparent seasonal changes.

  1. Influence of food availability on the spatial distribution of juvenile fish within soft sediment nursery habitats

    NASA Astrophysics Data System (ADS)

    Tableau, A.; Brind'Amour, A.; Woillez, M.; Le Bris, H.

    2016-05-01

    Soft sediments in coastal shallow waters constitute nursery habitats for juveniles of several flatfishes. The quality of a nursery is defined by its capacity to optimize the growth and the survival of juvenile fish. The influence of biotic factors, such as food availability, is poorly studied at the scale of a nursery ground. Whether food availability limits juvenile survival is still uncertain. A spatial approach is used to understand the influence of food availability on the distribution of juvenile fish of various benthic and demersal species in the Bay of Vilaine (France), a productive nursery ground. We quantified the spatial overlap between benthic macro-invertebrates and their predators (juvenile fish) to assess if the latter were spatially covering the most productive areas of the Bay. Three scenarios describing the shapes of the predator-prey spatial relationship were tested to quantify the strength of the relationship and consequently the importance of food availability in determining fish distribution. Our results underline that both food availability and fish densities vary greatly over the nursery ground. When considering small organisational levels (e.g., a single fish species), the predator-prey spatial relationship was not clear, likely because of additional environmental effects not identified here; but at larger organisational level (the whole juvenile fish community), a strong overlap between the fish predators and their prey was identified. The evidence that fish concentrate in sectors with high food availability suggests that either food is the limiting factor in that nursery or/and fish display behavioural responses by optimising their energetic expenditures associated with foraging. Further investigations are needed to test the two hypotheses and to assess the impact of benthic and demersal juvenile fish in the food web of coastal nurseries.

  2. Species composition of fish communities in northern Wisconsin lakes: Relation to pH

    USGS Publications Warehouse

    Wiener, J.G.; Rago, P.J.; Eilers, J.M.; Hendrey, G.R.

    1984-01-01

    Fish communities in circumneutral Wisconsin lakes contained significantly more species than did those in acidic lakes (pH 5.1-6.0). Common, as well as rare, species occurred with lower frequency in acidic lakes than in circumneutral lakes. Certain taxa, such as minnows and darters, were either absent or rare in the acidic lakes, probably because of pH-related stress. The differences in species composition and richness of fish communities between acidic and circumneutral lakes did not appear to be related to differences in physical habitat characteristics, past fish migrations or productivity between the two lake groups.

  3. Effects of an artificial reef system on demersal nekton assemblages in Xiangshan Bay, China

    NASA Astrophysics Data System (ADS)

    Jiang, Yazhou; Lin, Nan; Yuan, Xingwei; Jiao, Haifeng; Shentu, Jikang; Li, Shengfa

    2016-01-01

    In 2012, an artificial reef system was deployed in Xiangshan Bay, China, to enhance its fishery resources. To determine the effect of the artificial reef system on the demersal nekton assemblages, a beforeafter- control-impact study design was applied. Comparisons of assemblages from impact and control habitats revealed that the assemblage in the impact area had a gradual response to reef deployment. The assemblages in the impact and control areas changed in different ways after reef deployment. During the study period, total biomass, species richness and average body weight in the control area remained relatively stable, whereas there were significant increases in these indicators in the impact area. Responses to the reefs differed among nekton species, inducing assemblage succession in the reefs post-deployment. Sparus macrocephalus and Cynoglossus abbreviatus benefited most from reef deployment. Conversely, smallsized shrimp Palaemon gravieri showed a progressive decrease in biomass following reef deployment. Overall, the artificial reef system diversified the demersal nekton assemblage, enhanced the total biomass, and increased the proportion of large-sized species.

  4. Does pH affect fish species richness when lake area is considered?

    USGS Publications Warehouse

    Rago, P.J.; Wiener, J.G.

    1986-01-01

    Numerous surveys have shown that fish species richness (number of species) is positively correlated with lake pH. However, species richness of fish communities is also correlated with lake size, and low-pH lakes are often small. Thus, conclusions drawn from examination of fish community structure relative to spatial (among- lake) variation in pH have been limited by uncertainties regarding the confounded effects of lake area. The authors used two statistical methods, analysis of covariance and a nonparametric blocked comparison test, to remove effects of lake area and compare fish species richness in low-pH and high-pH lakes. Data from six previous surveys of water chemistry and fish communities in lakes of Ontario and northern Wisconsin were examined. Lakes with low pH ( less than or equal to 6.0) contained significantly fewer fish species than lakes with high pH (> 6.0) when the effect of lake area was considered. A simple probabilistic model showed that the ability to detect differences in species richness is low when lake areas and the pool of potential colonizing species are small. The authors recommend the blocked comparison test for separating the effects of lake area and pH on species richness.

  5. Gnathostoma infection in fish caught for local consumption in Nakhon Nayok Province, Thailand I. Prevalence and fish species.

    PubMed

    Rojekittikhun, Wichit; Chaiyasith, Tossapon; Nuamtanong, Supaporn; Komalamisra, Chalit

    2004-09-01

    Between August 2000 and August 2001, 12,216 fish of 73 species were purchased from several local markets in Nakhon Nayok Province, Thailand, and examined for the presence of Gnathostoma larvae. Almost all species were fresh-water fish that had grown naturally, rather than raised commercially. Eight species were found to be infected with gnathostome larvae. The overall prevalence was 5.1% (626/12,216) and a total of 5,969 larvae was recovered. The highest rate of infection (30.1 %) was found in Monopterus albus (swamp eel). The rates in the remaining infected fish were as follows: Anabas testudineus (climbing perch) 7.7%, Channa striata (striped snake-head fish) 7.4%, Clarius macrocephalus (Gunther's walking catfish) 6.7%, Channa micropeltes (giant snake-head fish) 5.1%, Channa lucius (blotched snake-head fish) 4.0%, Clarius batrachus (Batrachian walking catfish) 1.4%, and Ompok krattensis (butter sheatfish) 0.6%. The mean number of larvae/fish was highest in swamp eels (10.0 larvae/eel), and the maximum number of 698 larvae was recovered from one eel. The body sizes of the recovered G. spinigerum advanced third-stage larvae were 2.70-5.10 mm in length (average, 3.97+/-0.50 mm) and 0.29-0.60 mm in width (average, 0.40+/-0.04 mm). The average number of cephalic hooklets of the larvae from rows 1 to 4 were 41.8+/-0.5 (range, 40-43), 43.6+/-0.6 (range, 42-45), 46.1+/-0.9 (range, 44-48) and 49.3+/-0.7 (range, 48-51), respectively.

  6. Gnathostoma infection in fish caught for local consumption in Nakhon Nayok Province, Thailand I. Prevalence and fish species.

    PubMed

    Rojekittikhun, Wichit; Chaiyasith, Tossapon; Nuamtanong, Supaporn; Komalamisra, Chalit

    2004-09-01

    Between August 2000 and August 2001, 12,216 fish of 73 species were purchased from several local markets in Nakhon Nayok Province, Thailand, and examined for the presence of Gnathostoma larvae. Almost all species were fresh-water fish that had grown naturally, rather than raised commercially. Eight species were found to be infected with gnathostome larvae. The overall prevalence was 5.1% (626/12,216) and a total of 5,969 larvae was recovered. The highest rate of infection (30.1 %) was found in Monopterus albus (swamp eel). The rates in the remaining infected fish were as follows: Anabas testudineus (climbing perch) 7.7%, Channa striata (striped snake-head fish) 7.4%, Clarius macrocephalus (Gunther's walking catfish) 6.7%, Channa micropeltes (giant snake-head fish) 5.1%, Channa lucius (blotched snake-head fish) 4.0%, Clarius batrachus (Batrachian walking catfish) 1.4%, and Ompok krattensis (butter sheatfish) 0.6%. The mean number of larvae/fish was highest in swamp eels (10.0 larvae/eel), and the maximum number of 698 larvae was recovered from one eel. The body sizes of the recovered G. spinigerum advanced third-stage larvae were 2.70-5.10 mm in length (average, 3.97+/-0.50 mm) and 0.29-0.60 mm in width (average, 0.40+/-0.04 mm). The average number of cephalic hooklets of the larvae from rows 1 to 4 were 41.8+/-0.5 (range, 40-43), 43.6+/-0.6 (range, 42-45), 46.1+/-0.9 (range, 44-48) and 49.3+/-0.7 (range, 48-51), respectively. PMID:15689060

  7. Species succession and sustainability of the Great Lakes fish community

    USGS Publications Warehouse

    Eshenroder, Randy L.; Burnham-Curtis, Mary K.; Taylor, William W.; Ferreri, C. Paola

    1999-01-01

    This article concentrates on the sustainability of the offshore pelagic and deepwater fish communities that were historically dominated by lake trout (Salvelinus namaycush). The causes of alteration in these fish communities (i.e., overfishing, introductions, and cultural eutrophication) were identified by Loftus and Regier (1972). Here we look at the ecology of these altered communities in relation to sustainability and discuss the need for restoration.

  8. Species-specific patterns of aggregation of wild fish around fish farms

    NASA Astrophysics Data System (ADS)

    Dempster, T.; Sanchez-Jerez, P.; Uglem, I.; Bjørn, P.-A.

    2010-01-01

    Fish-farming structures are widespread in coastal waters and are highly attractive to wild fish. Several studies have estimated that tons to tens of tons of wild fish aggregate around fish farms. These estimates assumed that the majority of wild fish are concentrated immediately beneath farms, although this assumption has never been explicitly tested. We tested the hypothesis that abundances of wild fish would be greatest immediately beneath farms and progressively diminish with distance at 4 full-scale coastal salmon ( Salmo salar) farms in Norway. At each farm, fish were counted with a video-camera system at 5 different distances from the cages (farm = 0 m, 25, 50, 100 and 200 m) throughout the water column on three separate days. Combined across all locations and times, the total abundance of wild fish was 20 times greater at the farm than at the 200 m sampling distance. Saithe ( Pollachius virens) dominated assemblages at all 4 farms and were consistently significantly more abundant at the farm than at the 25-200 m distances. This 'tight aggregation' around farms corresponds to the reliance of saithe on waste feed when they school near farms. In contrast, patterns of distribution of both cod ( Gadus morhua) and poor cod ( Trisopterus minutus) varied among farms, with either highest abundances at the farm or a more even distribution of abundance across all 5 distances sampled. No specific pattern of aggregation was evident for the bottom-dwelling haddock ( Melanogrammus aeglefinus). Our results suggest that the present 100 m no-fishing zone around salmon farms protects the greatest proportion of farm-aggregated saithe and cod from fishing during the daytime. However, whether this reduces their overall susceptibility to fishing requires further research regarding nighttime distribution and movements.

  9. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches.

    PubMed

    Wagner, Elena L E S; Roche, Dominique G; Binning, Sandra A; Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region.

  10. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches

    PubMed Central

    Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  11. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches.

    PubMed

    Wagner, Elena L E S; Roche, Dominique G; Binning, Sandra A; Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  12. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  13. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  14. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  15. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  16. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  17. Predators reduce abundance and species richness of coral reef fish recruits via non-selective predation

    NASA Astrophysics Data System (ADS)

    Heinlein, J. M.; Stier, A. C.; Steele, M. A.

    2010-06-01

    Predators have important effects on coral reef fish populations, but their effects on community structure have only recently been investigated and are not yet well understood. Here, the effect of predation on the diversity and abundance of young coral reef fishes was experimentally examined in Moorea, French Polynesia. Effects of predators were quantified by monitoring recruitment of fishes onto standardized patch reefs in predator-exclosure cages or uncaged reefs. At the end of the 54-day experiment, recruits were 74% less abundant on reefs exposed to predators than on caged ones, and species richness was 42% lower on reefs exposed to predators. Effects of predators varied somewhat among families, however, rarefaction analysis indicated that predators foraged non-selectively among species. These results indicate that predation can alter diversity of reef fish communities by indiscriminately reducing the abundance of fishes soon after settlement, thereby reducing the number of species present on reefs.

  18. 78 FR 77659 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-24

    ... (16344) was published in the Federal Register on April 14, 2011 (76 FR 20956). Permit 16344 was issued to... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... CFR parts 222-226) governing listed fish and wildlife permits. ] Species Covered in This Notice...

  19. 75 FR 33243 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-11

    ... Register on June 17, 2009 (74 FR 28666). Permit 14268 was issued to TRPA on April 27, 2010. Permit 14268... Anadromous Fish AGENCY: NOAA's National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric...) governing listed fish and wildlife permits. Species Covered in This Notice This notice is relevant to...

  20. Connecting ground water influxes with fish species diversity in an urbanized watershed

    USGS Publications Warehouse

    Steffy, L.Y.; McGinty, A.L.; Welty, C.; Kilham, S.S.

    2004-01-01

    Valley Creek watershed is a small stream system that feeds the Schuylkill River near Philadelphia, Pennsylvania. The watershed is highly urbanized, including over 17 percent impervious surface cover (ISC) by area. Imperviousness in a watershed has been linked to fish community structure and integrity. Generally, above 10 to 12 percent ISC there is marked decline in fish assemblages with fish being absent above 25 percent ISC. This study quantifies the importance of ground water in maintaining fish species diversity in subbasins with over 30 percent ISC. Valley Creek contains an atypical fish assemblage in that the majority of the fish are warm-water species, and the stream supports naturally reproducing brown trout, which were introduced and stocked from the early 1900s to 1985. Fish communities were quantified at 13 stations throughout the watershed, and Simpson's species diversity index was calculated. One hundred and nine springs were located, and their flow rates measured. A cross covariance analysis between Simpson's species diversity index and spring flow rates upstream of fish stations was performed to quantify the spatial correlation between these two variables. The correlation was found to be highest at lag distances up to about 400 m and drop off significantly beyond lag distances of about 800 m.

  1. OCCURRENCE OF TWO LEECH SPECIES (ANNELIDA: HIRUDINEA) ON FISHES IN THE KENTUCKY RIVER

    EPA Science Inventory

    Little is known specifically on the feeding relationships between parasitic leeches and fish in North America. During an electrofishing survey conducted on the main stem of the Kentucky River in the summer of 2000, the presence of leeches was documented on six species of fish. ...

  2. 78 FR 24382 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-25

    ... distribution and diversity of anadromous fish species in water bodies adjacent to and within the county's levee... management practice program and establish in-water work windows that would minimize effects on listed fish... pacificus): Threatened southern (S). Green sturgeon (Acipenser medirostris): Threatened southern...

  3. CONDITIONS FOR COEXISTENCE OF FRESHWATER MUSSEL SPECIES VIA PARTITIONING OF FISH HOST RESOURCES

    EPA Science Inventory

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larv...

  4. [Identification of fish species based on ribosomal DNA ITS2 locus].

    PubMed

    Yuan, Wan-An

    2010-04-01

    To prevent illegal fishing and sale, the most difficult problem is identification of marketed fish species, especially the parts that are difficult to be differentiated with morphological method (e.g., larval, eggs, scales, meat, products etc. To assist conservation and management of fishery resources, this paper reported a molecular genetic approach based on ribosomal internal transcribed spacer 2 locus. The method includes two steps: (1) the order general primers were designed according to the conservative nature of 5.8SrRAN and 28SrRNA genes within an order, and the DNA ribosomal internal transcribed spacer 2 locus fragment were then amplified and sequenced. (2) The species-specific ladders and the species-specific primers for each species were designed according to the sequencing results. The map of molecular taxonomy was constructed. This approach employs multiplex PCR that is formatted for fish species identification. We tested 210 single-species samples and 40 mix-species samples from different regions of China. The approach distinguished accurately and sensitively samples from each of the five species. This genetic and molecular approach will be useful for fish conservation, assessment, management and exploitation, strengthen in law enforcement of fishery manager, combat rare and endangered fish smuggling, and prevent commercial fraud and biological invasion by harmful nonnative species.

  5. Host tropism of infectious salmon anaemia virus in marine and freshwater fish species.

    PubMed

    Aamelfot, M; Dale, O B; McBeath, A; Falk, K

    2015-08-01

    The aquatic orthomyxovirus infectious salmon anaemia virus (ISAV) causes a severe disease in farmed Atlantic salmon, Salmo salar L. Although some ISA outbreaks are caused by horizontal transmission of virus between farms, the source and reservoir of the virus is largely unknown and a wild host has been hypothesized. Atlantic salmon are farmed in open net-pens, allowing transmission of pathogens from wild fish and the surrounding environment to the farmed fish. In this study, a large number of fish species were investigated for ISAV host potential. For orthomyxoviruses, a specific receptor binding is the first requirement for infection; thus, the fish species were investigated for the presence of the ISAV receptor. The receptor was found to be widely distributed across the fish species. All salmonids expressed the receptor. However, only some of the cod-like and perch-like fish did, and all flat fish were negative. In the majority of the positive species, the receptor was found on endothelial cells and/or on red blood cells. The study forms a basis for further investigations and opens up the possibility for screening species to determine whether a wild host of ISAV exists.

  6. 78 FR 43145 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-19

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC767 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

  7. Morphological features to distinguish the larval stage of invasive Ruffe from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  8. Morphological features to distinguish the larval stage of invasive Ruffe (Gymnocephalus cernuus) from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  9. Levels of genetic diversity and taxonomic status of Epinephelus species in United Arab Emirates fish markets.

    PubMed

    Ketchum, Remi N; Dieng, Mame M; Vaughan, Grace O; Burt, John A; Idaghdour, Youssef

    2016-04-30

    Understanding the patterns of genetic diversity of fish species is essential for marine conservation and management. This is particularly important in the Arabian Gulf where marine life is subject to extreme environmental conditions that could impact genetic diversity. Here we assess genetic diversity of the most commercially important fish in the United Arab Emirates; groupers (Epinephelus spp.). Sequencing of 973 bp mitochondrial DNA from 140 tissue samples collected in four main fish markets revealed 58 haplotypes clustered within three groups. Data analysis revealed the presence of three distinct Epinephelus species being marketed as one species (hammour): Epinephelus coioides, Epinephelus areolatus and Epinephelus bleekeri. We report species-specific genetic markers and demonstrate that all three species exhibit relatively low levels of genetic variation, reflecting the effect of overfishing and environmental pressures. In light of the genetic evidence presented here, conservation and management of groupers in the UAE warrant the implementation of species-specific measures. PMID:26656801

  10. Levels of genetic diversity and taxonomic status of Epinephelus species in United Arab Emirates fish markets.

    PubMed

    Ketchum, Remi N; Dieng, Mame M; Vaughan, Grace O; Burt, John A; Idaghdour, Youssef

    2016-04-30

    Understanding the patterns of genetic diversity of fish species is essential for marine conservation and management. This is particularly important in the Arabian Gulf where marine life is subject to extreme environmental conditions that could impact genetic diversity. Here we assess genetic diversity of the most commercially important fish in the United Arab Emirates; groupers (Epinephelus spp.). Sequencing of 973 bp mitochondrial DNA from 140 tissue samples collected in four main fish markets revealed 58 haplotypes clustered within three groups. Data analysis revealed the presence of three distinct Epinephelus species being marketed as one species (hammour): Epinephelus coioides, Epinephelus areolatus and Epinephelus bleekeri. We report species-specific genetic markers and demonstrate that all three species exhibit relatively low levels of genetic variation, reflecting the effect of overfishing and environmental pressures. In light of the genetic evidence presented here, conservation and management of groupers in the UAE warrant the implementation of species-specific measures.

  11. Late winter larval fish assemblage in the southern East China Sea, with emphasis on spatial relations between mesopelagic and commercial pelagic fish larvae

    NASA Astrophysics Data System (ADS)

    Sassa, Chiyuki; Konishi, Yoshinobu

    2015-10-01

    We examined larval fish assemblages in the southern East China Sea during late winter where large spawning grounds of several commercial pelagic fishes are formed. Our samples include a total of 187 species or taxa of larval fish belonging to 118 genera, 96 families, and 18 orders. Mesopelagic fish larvae, mainly Stomiiformes, Aulopiformes, and Myctophiformes, accounted for 66.5% of the total catch, while commercial species such as Trachurus japonicus, Scomber spp., and Trichiurus japonicus for 16.6%. Based on the species composition, three assemblages were recognized: Kuroshio (KUR), Shelf-Break (BRE), and Shelf (SHE) assemblages. KUR assemblage was mainly characterized by various mesopelagic fishes such as Sigmops gracilis, Diaphus spp., and Myctophum asperum, BRE assemblage by both commercial pelagic and mesopelagic species, SHE assemblage by demersal species such as Lepidotrigla spp. and Gobiidae spp. Both abundance and diversity were highest in KUR assemblage, although food availability for the larvae would be poorest. The combination of variables of sea surface temperature-chlorophyll a concentrations best explained the larval distribution. Except for Benthosema pterotum, the center of distribution of mesopelagic fish larvae was clearly separated from that of the commercial species by the Kuroshio front. However, a northward intrusion of the Kuroshio transported mesopelagic fish larvae onto the shelf, forming the BRE assemblage. Competition for prey between mesopelagic and commercial pelagic fish larvae would potentially occur if the intrusion is strong.

  12. Reef Fishes in Biodiversity Hotspots Are at Greatest Risk from Loss of Coral Species

    PubMed Central

    Holbrook, Sally J.; Schmitt, Russell J.; Messmer, Vanessa; Brooks, Andrew J.; Srinivasan, Maya; Munday, Philip L.; Jones, Geoffrey P.

    2015-01-01

    Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems. PMID:25970588

  13. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species.

    PubMed

    Holbrook, Sally J; Schmitt, Russell J; Messmer, Vanessa; Brooks, Andrew J; Srinivasan, Maya; Munday, Philip L; Jones, Geoffrey P

    2015-01-01

    Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems. PMID:25970588

  14. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species.

    PubMed

    Holbrook, Sally J; Schmitt, Russell J; Messmer, Vanessa; Brooks, Andrew J; Srinivasan, Maya; Munday, Philip L; Jones, Geoffrey P

    2015-01-01

    Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems.

  15. Observations of the distributions of five fish species in a small Appalachian stream

    USGS Publications Warehouse

    Larson, Gary L.; Hoffman, Robert L.; Moore, S.E.

    2002-01-01

    The notion has been growing that resident stream fishes exhibit a greater capacity for movement than was previously thought. In this study, we recorded the distributions of four resident fish species (longnose dace Rhinichthys cataractae, blacknose dace R. atratulus, mottled sculpin Cottus bairdi, and rainbow trout Oncorhynchus mykiss) and one nonresident species (central stoneroller Campostoma anomalum) in Rock Creek, a small tributary of Cosby Creek in Great Smoky Mountains National Park, over the period 1979a??1995. During this study, 1,998 individuals of resident species were collected from stream sections considered to be within a common area of distribution for each species. Forty-five individuals of resident and nonresident species were captured upstream of these areas, and eight of these fish were considered to be larger than individuals considered typical for each species. Small mammal dispersal theory concepts were used to classify and describe fish movements outside of common areas of distribution. These movements were identified as important in maintaining population connectivity within stream drainages, contributing to reducing the potential for local extinctions of populations and to the recolonization of unoccupied habitats. This study highlights the need for continued study of fish movements in stream drainages and for development of appropriate resource management strategies based partly on the spatial dynamics of fish populations and communities.

  16. Why are there so few freshwater fish species in most estuaries?

    PubMed

    Whitfield, A K

    2015-04-01

    The freshwater fish assemblage in most estuaries is not as species rich as the marine assemblage in the same systems. Coupled with this differential richness is an apparent inability by most freshwater fish species to penetrate estuarine zones that are mesohaline (salinity: 5·0-17·9), polyhaline (salinity: 18·0-29·9) or euhaline (salinity: 30·0-39·9). The reason why mesohaline waters are avoided by most freshwater fishes is difficult to explain from a physiological perspective as many of these species would be isosmotic within this salinity range. Perhaps, a key to the poor penetration of estuarine waters by freshwater taxa is an inability to develop chloride cells in gill filament epithelia, as well as a lack of other osmoregulatory adaptations present in euryhaline fishes. Only a few freshwater fish species, especially some of those belonging to the family Cichlidae, have become fully euryhaline and have successfully occupied a wide range of estuaries, sometimes even dominating in hyperhaline systems (salinity 40+). Indeed, this review found that there are few fish species that can be termed holohaline (i.e. capable of occupying waters with a salinity range of 0-100+) and, of these taxa, there is a disproportionally high number of freshwater species (e.g. Cyprinodon variegatus, Oreochromis mossambicus and Sarotherodon melanotheron). Factors such as increased competition for food and higher predation rates by piscivorous fishes and birds may also play an important role in the low species richness and abundance of freshwater taxa in estuaries. Added to this is the relatively low species richness of freshwater fishes in river catchments when compared with the normally higher diversity of marine fish species for potential estuarine colonization from the adjacent coastal waters. The almost complete absence of freshwater fish larvae from the estuarine ichthyoplankton further reinforces the poor representation of this guild within these systems. An explanation as

  17. Why are there so few freshwater fish species in most estuaries?

    PubMed

    Whitfield, A K

    2015-04-01

    The freshwater fish assemblage in most estuaries is not as species rich as the marine assemblage in the same systems. Coupled with this differential richness is an apparent inability by most freshwater fish species to penetrate estuarine zones that are mesohaline (salinity: 5·0-17·9), polyhaline (salinity: 18·0-29·9) or euhaline (salinity: 30·0-39·9). The reason why mesohaline waters are avoided by most freshwater fishes is difficult to explain from a physiological perspective as many of these species would be isosmotic within this salinity range. Perhaps, a key to the poor penetration of estuarine waters by freshwater taxa is an inability to develop chloride cells in gill filament epithelia, as well as a lack of other osmoregulatory adaptations present in euryhaline fishes. Only a few freshwater fish species, especially some of those belonging to the family Cichlidae, have become fully euryhaline and have successfully occupied a wide range of estuaries, sometimes even dominating in hyperhaline systems (salinity 40+). Indeed, this review found that there are few fish species that can be termed holohaline (i.e. capable of occupying waters with a salinity range of 0-100+) and, of these taxa, there is a disproportionally high number of freshwater species (e.g. Cyprinodon variegatus, Oreochromis mossambicus and Sarotherodon melanotheron). Factors such as increased competition for food and higher predation rates by piscivorous fishes and birds may also play an important role in the low species richness and abundance of freshwater taxa in estuaries. Added to this is the relatively low species richness of freshwater fishes in river catchments when compared with the normally higher diversity of marine fish species for potential estuarine colonization from the adjacent coastal waters. The almost complete absence of freshwater fish larvae from the estuarine ichthyoplankton further reinforces the poor representation of this guild within these systems. An explanation as

  18. Three peroxisome proliferator-activated receptor isotypes from each of two species of marine fish.

    PubMed

    Leaver, Michael J; Boukouvala, Evridiki; Antonopoulou, Efthimia; Diez, Amalia; Favre-Krey, Laurence; Ezaz, M Tariq; Bautista, José M; Tocher, Douglas R; Krey, Grigorios

    2005-07-01

    The cloning and characterization of cDNAs and genes encoding three peroxisome proliferator-activated receptor (PPAR) isotypes from two species of marine fish, the plaice (Pleuronectes platessa) and the gilthead sea bream (Sparus aurata), are reported for the first time. Although differences in the genomic organization of the fish PPAR genes compared with their mammalian counterparts are evident, sequence alignments and phylogenetic comparisons show the fish genes to be homologs of mammalian PPARalpha, PPARbeta/delta, and PPARgamma. Like their mammalian homologs, fish PPARs bind to a variety of natural PPAR response elements (PPREs) present in the promoters of mammalian or piscine genes. In contrast, the mRNA expression pattern of PPARs in the two fish species differs from that observed in other vertebrates. Thus, PPARgamma is expressed more widely in fish tissues than in mammals, whereas PPARalpha and beta are expressed similarly in profile to mammals. Furthermore, nutritional status strongly influences the expression of all three PPAR isotypes in liver, whereas it has no effect on PPAR expression in intestinal and adipose tissues. Fish PPARalpha and beta exhibit an activation profile similar to that of the mammalian PPAR in response to a variety of activators/ligands, whereas PPARgamma is not activated by mammalian PPARgamma-specific ligands. Amino acid residues shown to be critical for ligand binding in mammalian PPARs are not conserved in fish PPARgamma and therefore, together with the distinct tissue expression profile of this receptor, suggest potential differences in the function of PPARgamma in fish compared with mammals.

  19. Universal primers for amplification of the complete mitochondrial control region in marine fish species.

    PubMed

    Cheng, Y Z; Xu, T J; Jin, X X; Tang, D; Wei, T; Sun, Y Y; Meng, F Q; Shi, G; Wang, R X

    2012-01-01

    Through multiple alignment analysis of mitochondrial tRNA-Thr and tRNA-Phe sequences from 161 fishes, new universal primers specially targeting the entire mitochondrial control region were designed. This new primer set successfully amplified the expected PCR products from various kinds of marine fish species, belonging to various families, and the amplified segments were confirmed to be the control region by sequencing. These primers provide a useful tool to study the control region diversity in economically important fish species, the possible mechanism of control region evolution, and the functions of the conserved motifs in the control region.

  20. Long-term changes in the fish community structure from the Tsushima warm current region of the Japan/East Sea with an emphasis on the impacts of fishing and climate regime shift over the last four decades

    NASA Astrophysics Data System (ADS)

    Tian, Yongjun; Kidokoro, Hideaki; Watanabe, Tatsuro

    2006-02-01

    Japanese fisheries production in the Japan/East Sea between 1958 and 2003 increased to their peak (1.76 million tons) in the late 1980s and decreased abruptly with the collapse of Japanese sardine. Catch results for 58 fisheries and various environmental time-series data sets and community indices, including mean trophic level (MTL) and Simpson’s diversity index (DI), were used to investigate the impacts of fishing and climate changes on the structure of the fish community in the Tsushima warm current (TWC) region of the Japan/East Sea. The long-term trend in fisheries production was largely dependent on the Japanese sardine that, as a single species, contributed up to 60% of the total production in the Japanese waters of the Japan/East Sea during the late 1980s. Excluding Japanese sardine, production of the small pelagic species was higher during 1960s and 1990s but lower during 1970s and 1980s. This variation pattern generally corresponds with the trend in water temperature, warmer before early 1960s and after 1990s but colder during 1970s and 1980s. The warm-water, large predatory fishes and cold water demersal species show opposite responses to the water temperature in the TWC region, indicating the significant impact of oceanic conditions on fisheries production of the Japan/East Sea. Declines in demersal fishes and invertebrates during 1970s and 1980s suggested some impact of fishing. MTL and DI show a similar variation pattern: higher during 1960s and 1990s but lower during 1970s and 1980s. In particular, the sharp decline during the 1980s resulted from the abundant sardine catches, suggesting that dominant species have a large effect on the structure of the fish community in the Japan/East Sea. Principal component analysis for 58 time-series data sets of fisheries catches suggested that the fish community varied on inter-annual to inter-decadal scales; the abrupt changes that occurred in the mid-1970s and late 1980s seemed to correspond closely with the

  1. Discriminant classification of different fish-species backscattering

    NASA Astrophysics Data System (ADS)

    Zhang, Qiao; Xu, Feng; Liu, Yin; Zhang, Chun

    2012-11-01

    The complex structure of fish and multispecies composition complicate the analysis of acoustic data. Consequently, it is difficult to obtain a highly accurate rate of classification by using current approaches. This paper introduces two discriminating methods: the adaptive segmentation temporal centroid method and the wavelet packet multi-scale information entropy method. To verify and compare these two methods, an ex situ experiment has been performed with three kinds of fish: Crucian carp (Carassius auratus), Yellow-headed catfish (Pelteobagrus fulvidraco) and Bluntnose black bream (Megalobrama amblycephale). The backscattering signals of these fishes are obtained. Then the temporal centroid in the divided sub-segmentation of the backscattering envelope is calculated, and the multi-scale information entropy of the wavelet packet decomposition in different frequency bands is extracted. Finally, three kinds of fish are successfully classified by using a BP neural network. The result shows that the adaptive segmentation temporal centroid method is 4% more accurate than the wavelet packet multi-scale information entropy method.

  2. Current and future assisted reproductive technologies for fish species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Food and Agriculture Organization of the United Nations (FAO) estimates that in 2012 aquaculture production of fish will meet or exceed that of the capture fisheries for the first time. Thus, we have just turned the corner from a predominantly hunting gathering approach to meeting our nutrition...

  3. Using a Popular Pet Fish Species to Study Territorial Behaviour

    ERIC Educational Resources Information Center

    Abante, Maria E.

    2005-01-01

    The colourful, vigorous territorial display behaviour of the Siamese fighting fish, "Betta splendens", has great appeal for both pet enthusiasts and animal behaviourists. Their beauty, longevity, easy maintenance and rearing make them a popular pet and an ideal science laboratory specimen. This investigation utilises "B. splendens" to test for the…

  4. DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes

    PubMed Central

    Landi, Monica; Dimech, Mark; Arculeo, Marco; Biondo, Girolama; Martins, Rogelia; Carneiro, Miguel; Carvalho, Gary Robert; Brutto, Sabrina Lo; Costa, Filipe O.

    2014-01-01

    Background DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes to assign species from query sequences. We tested query sequences against 1) a reference library of ranked DNA barcodes from the neighbouring North East Atlantic, and 2) the public databases BOLD and GenBank. In the first case, a reference library comprising DNA barcodes with reliability grades for 146 fish species was used as diagnostic dataset to screen 486 query DNA sequences from fish specimens collected in the central basin of the Mediterranean Sea. Of all query sequences suitable for comparisons 98% were unambiguously confirmed through complete match with reference DNA barcodes. In the second case, it was possible to assign species to 83% (BOLD-IDS) and 72% (GenBank) of the sequences from the Mediterranean. Relatively high intraspecific genetic distances were found in 7 species (2.2%–18.74%), most of them of high commercial relevance, suggesting possible cryptic species. Conclusion/Significance We emphasize the discriminatory power of COI barcodes and their application to cases requiring species level resolution starting from query sequences. Results highlight the value of public reference libraries of reliability grade-annotated DNA barcodes, to identify species from different geographical origins. The ability to assign species with high precision from DNA samples of

  5. Species richness and patterns of invasion in plants, birds, and fishes in the United States

    USGS Publications Warehouse

    Stohlgren, Thomas J.; Barnett, David; Flather, Curtis; Fuller, Pam L.; Peterjohn, Bruce G.; Kartesz, John; Master, Lawrence L.

    2006-01-01

    We quantified broad-scale patterns of species richness and species density (mean # species/km2) for native and non-indigenous plants, birds, and fishes in the continental USA and Hawaii. We hypothesized that the species density of native and non-indigenous taxa would generally decrease in northern latitudes and higher elevations following declines in potential evapotranspiration, mean temperature, and precipitation. County data on plants (n = 3004 counties) and birds (n=3074 counties), and drainage (6 HUC) data on fishes (n = 328 drainages) showed that the densities of native and non-indigenous species were strongly positively correlated for plant species (r = 0.86, P < 0.0001), bird species (r = 0.93, P<0.0001), and fish species (r = 0.41, P<0.0001). Multiple regression models showed that the densities of native plant and bird species could be strongly predicted (adj. R2 = 0.66 in both models) at county levels, but fish species densities were less predictable at drainage levels (adj. R2 = 0.31,P<0.0001). Similarly, non-indigenous plant and bird species densities were strongly predictable (adj. R2 = 0.84 and 0.91 respectively), but non-indigenous fish species density was less predictable (adj. R2 = 0.38). County level hotspots of native and non-indigenous plants, birds, and fishes were located in low elevation areas close to the coast with high precipitation and productivity (vegetation carbon). We show that (1) native species richness can be moderately well predicted with abiotic factors; (2) human populations have tended to settle in areas rich in native species; and (3) the richness and density of non-indigenous plant, bird, and fish species can be accurately predicted from biotic and abiotic factors largely because they are positively correlated to native species densities. We conclude that while humans facilitate the initial establishment, invasions of non-indigenous species, the spread and subsequent distributions of non-indigenous species may be controlled

  6. Persistent chlorinated pesticides in fish species from Qiantang River in East China.

    PubMed

    Zhou, Rongbing; Zhu, Lizhong; Kong, Qingxia

    2007-06-01

    Thirteen organochlorine pesticides (OCPs) in 18 fish species from Qiantang River were firstly determined by GC-ECD. To elucidate the sources and the environment fate of these pollutants, water and sediment samples were also analyzed for OCPs contents. Total concentrations of OCPs in fish muscles ranged from 7.43 to 143.79 ng g(-1) wet weight (ww) with highest concentration recorded in sole fish (Cynoglossus abbreviatus), a benthic carnivore. The results indicated that carnivore fish have higher OCPs concentration than other fish with different feeding modes. OCPs concentration in fish was in the range of 1.86-5.85, 2.65-133.51 and 1.94-12.48 ng g(-1) for HCHs (alpha-, beta-, gamma-, delta-HCH), DDTs (p,p'-DDD, p,p'-DDE, p,p'-DDT, o,p'-DDD) and other OCPs (aldrin, diedrin, endrin, heptachlor, heptachlor expoide), respectively. The highest OCPs concentration in fish organs of four big fish species was found in brain of silver carp (Hypophthalmichthys molitrix), 289.26 ng g(-1) ww followed by kidney, liver, heart and gill. Among the OCPs analyzed, DDE, gamma-HCH and heptachlor were the predominant contaminants in fish muscle, which indicated that there was recent input of lindane. Significant correlation was observed between concentrations of DDTs and lipid content as well as between OCPs and lipid contents in fish species. Both field water bioconcentration factors (BCF) and sediment BCF showed a positive correlation with octanol-water partition coefficients (Kow) in the sole fish.

  7. Changes in wild fish assemblages after the establishment of a fish farming zone in an oligotrophic marine ecosystem

    NASA Astrophysics Data System (ADS)

    Machias, A.; Karakassis, I.; Labropoulou, M.; Somarakis, S.; Papadopoulou, K. N.; Papaconstantinou, C.

    2004-08-01

    The species composition, abundance and diversity of demersal fish assemblages has been investigated in an oligotrophic coastal bay in the Aegean Sea which is a designated zone for the development of aquaculture. Samples were collected using experimental trawling, before the establishment of fish cages in the area during early June 1987 and after attaining the maximal production of the aquaculture zone in late May 2001. The overall abundance of the fish assemblage increased by a factor of 4 and the average trophic level of the fish community increased from 3.59 to 3.79. Traditional diversity indices showed an increase in dominance but the distinctness measures of biodiversity showed that the overall structure obtained after the establishment of fish farming was not phylogenetically impoverished. Multivariate analysis showed that the community differences between the two periods are quantitative rather than qualitative. Comparisons in length frequencies between the two periods indicated that specimens of the species compared were either similar or larger in the second period. The species favoured by the presence of aquaculture were not the ones normally feeding on the food pellets under the cages but those normally occurring in the fishing grounds of the study. It is concluded that the release of nutrients from fish farming in nutrient-poor systems can have a positive effect on local fisheries with no visible negative change in species composition or biodiversity.

  8. Effect of species, life stage, and water temperature on the toxicity of hydrogen peroxide to fish

    USGS Publications Warehouse

    Rach, J.J.; Schreier, T.M.; Howe, G.E.; Redman, S.D.

    1997-01-01

    Hydrogen peroxide is a drug of low regulatory priority status that is effective in treating fish and fish eggs infected by fungi. However, only limited information is available to guide fish culturists in administering hydrogen peroxide to diseased fish. Laboratory tests were conducted to determine (1) the sensitivity of brown trout Salmo trutta, lake trout Salvelinus namaycush, fathead minnow Pimephales promelas, walleye Stizostedion vitreum, channel catfish Ictalurus punctatus, and bluegill Lepomis, machrochirus to hydrogen peroxide treatments; (2) the sensitivity of various life stages of rainbow trout Oncorhynchus mykiss to hydrogen peroxide treatments; and (3) the effect of water temperature on the acute toxicity of hydrogen peroxide to three fish species. Fish were exposed to hydrogen peroxide concentrations ranging from 100 to 5,000 mu L/L (ppm) for 15-min or 45-min treatments every other day for four consecutive treatments to determine the sensitivity of various species and life stages of fish. Except for walleye, most species of fish tested (less than or equal to 2 g) tolerated hydrogen peroxide of 1,000 mu L/L or greater. Walleyes were sensitive to hydrogen peroxide concentrations as low as 100 mu L/L. A correlation was found between the toxicity of hydrogen peroxide and the life stages of rainbow trout; larger fish were more sensitive. Generally, the toxicity of hydrogen peroxide increased for all species as water temperature increased. The results of these experiments demonstrate that it is important to consider the effects of species, life stage, and water temperature when conducting hydrogen peroxide treatments.

  9. Occurrence and abundance of anisakid nematode larvae in five species of fish from southern Australian waters.

    PubMed

    Shamsi, Shokoofeh; Eisenbarth, Albert; Saptarshi, Shruti; Beveridge, Ian; Gasser, Robin B; Lopata, Andreas L

    2011-04-01

    The aim of the present study was to conduct, in southern Australian waters, a preliminary epidemiological survey of five commercially significant species of fish (yellow-eye mullet, tiger flathead, sand flathead, pilchard and king fish) for infections with anisakid nematodes larvae using a combined morphological-molecular approach. With the exception of king fish, which was farmed and fed commercial pellets, all other species were infected with at least one species of anisakid nematode, with each individual tiger flathead examined being infected. Five morphotypes, including Anisakis, Contracaecum type I and II and Hysterothylacium type IV and VIII, were defined genetically using mutation scanning and targeted sequencing of the second internal transcribed spacer of nuclear ribosomal DNA. The findings of the present study provide a basis for future investigations of the genetic composition of anisakid populations in a wide range of fish hosts in Australia and for assessing their public health significance. PMID:21057811

  10. Fish and Phytoplankton Exhibit Contrasting Temporal Species Abundance Patterns in a Dynamic North Temperate Lake

    PubMed Central

    Hansen, Gretchen J. A.; Carey, Cayelan C.

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of “core” (common occurrence and high abundance) and “occasional” (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  11. Fish and phytoplankton exhibit contrasting temporal species abundance patterns in a dynamic north temperate lake.

    PubMed

    Hansen, Gretchen J A; Carey, Cayelan C

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of "core" (common occurrence and high abundance) and "occasional" (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  12. Effects of fish community on occurrences of Yangtze finless porpoise in confluence of the Yangtze and Wanhe Rivers.

    PubMed

    Zhang, Xiaoke; Yu, Daoping; Wang, Huili; Wan, An; Chen, Minmin; Tao, Feng; Song, Zunrong

    2015-06-01

    The Yangtze finless porpoise is a subspecies of narrow-ridged finless porpoise endemic to the middle and lower reaches of the Yangtze River and the adjoining Poyang and Dongting Lakes. With the depletion of fish stocks in the Yangtze River in recent decades, food availability has become the most important factor affecting the survival of this subspecies. Despite this, the relationships between fish community and occurrences of porpoise are far from being fully understood. Therefore, during September 2013 to August 2014, the occurrences of porpoise were investigated in confluence of the Yangtze and Wanhe Rivers; fish community was also surveyed synchronously in confluence and two adjacent transects. The results showed that (1) the confluence had maximum fish species richness, and the main dominant species was upper fish, while the other two transects were mainly dominated by demersal fish. ANOVA analyses showed that individual number and yield of upper fish which can be eaten by porpoise (upper edible fish) in the confluence were significantly higher than other two transects. (2) Average group size of the porpoise was 3.7 ± 1.8 individuals. The occurrences of porpoise in different seasons had great differences, and the porpoise was more likely to be detected in autumn and winter. (3) Fish community had significant effects on occurrences of porpoise, and the main influencing factors were fish species richness, individual number, and yield of edible fish, especially the upper edible fish. The results of this study will have important implications for the conservation of porpoise.

  13. USE OF SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK TO ENDANGERED AND THREATENED FISHES

    EPA Science Inventory

    Surrogate species used in toxicity assessments must be carefully selected in order to be protective of listed species. At present, the rainbow trout is considered to be an acceptable surrogate for coldwater fishes. Similarly, the fathead minnow is considered to be an acceptable s...

  14. Genome analysis of 7 Kengyilia (Triticeae Poaceae) species with FISH and GISH

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genome composition of and genetic relationships among seven Kengyilia species were assessed using a technique of sequential FISH (fluorescence in situ hybridization) and GISH (genomic in situ hybridization). Five of these 7 species, K. kokonorica, K. rigidula, K. hirsula, K. grandiglumis, and K. th...

  15. Longitudinal zonation of Pacific Northwest (USA) fish assemblages and the species-discharge relationship

    EPA Science Inventory

    Fish ecologists often use species-discharge relationships (SDRs) to understand how species richness varies with aquatic habitat availability, but few SDR studies have considered whether the reported SDRs are scale-dependent, or attributed the SDR to a specific causal mechanism. ...

  16. Occurrence of three leech species (Annelida: Hirudinida) on fishes in the Kentucky River

    EPA Science Inventory

    Leeches were collected from six fish species distributed among four of ten sites sampled. The leech species observed were Myzobdella reducta (Meyer, 1940) and Myzobdella lugubris Leidy, 1851 of the family Piscicolidae and Placobdella pediculata Hemingway, 1908 of the family Gloss...

  17. Spatio-seasonal patterns of fish diversity, Haizhou Bay, China

    NASA Astrophysics Data System (ADS)

    Su, Wei; Xue, Ying; Zhang, Chongliang; Ren, Yiping

    2015-01-01

    Spatial-seasonal patterns in fish diversity in Haizhou Bay were studied based on stratified random surveys conducted in 2011. Principal component analysis was conducted to distinguish different diversity components, and the relationships among 11 diversity indices were explored. Generalized additive models were constructed to examine the environmental effects on diversity indices. Eleven diversity indices were grouped into four components: (1) species numbers and richness, (2) heterogeneous indices, (3) evenness, and (4) taxonomic relatedness. The results show that diversity indices among different components are complementary. Spatial patterns show that fish diversity was higher in coastal areas, which was affected by complex bottom topography and spatial variations of water mass and currents. Seasonal trends could be best explained by the seasonal migration of dominant fish species. Fish diversity generally declined with increasing depth except for taxonomic distinctness, which increased with latitude. In addition, bottom temperature had a significant effect on diversity index of richness. These results indicate that substrate complexity and environmental gradients had important influences on fish diversity patterns, and these factors should be considered in fishery resource management and conservation. Furthermore, diversity in two functional groups (demersal/pelagic fishes) was influenced by different environmental factors. Therefore, the distribution of individual species or new indicators in diversity should be applied to examine spatio-seasonal variations in fish diversity.

  18. Spatio-seasonal patterns of fish diversity, Haizhou Bay, China

    NASA Astrophysics Data System (ADS)

    Su, Wei; Xue, Ying; Zhang, Chongliang; Ren, Yiping

    2014-09-01

    Spatial-seasonal patterns in fish diversity in Haizhou Bay were studied based on stratified random surveys conducted in 2011. Principal component analysis was conducted to distinguish different diversity components, and the relationships among 11 diversity indices were explored. Generalized additive models were constructed to examine the environmental effects on diversity indices. Eleven diversity indices were grouped into four components: (1) species numbers and richness, (2) heterogeneous indices, (3) evenness, and (4) taxonomic relatedness. The results show that diversity indices among different components are complementary. Spatial patterns show that fish diversity was higher in coastal areas, which was affected by complex bottom topography and spatial variations of water mass and currents. Seasonal trends could be best explained by the seasonal migration of dominant fish species. Fish diversity generally declined with increasing depth except for taxonomic distinctness, which increased with latitude. In addition, bottom temperature had a significant effect on diversity index of richness. These results indicate that substrate complexity and environmental gradients had important influences on fish diversity patterns, and these factors should be considered in fishery resource management and conservation. Furthermore, diversity in two functional groups (demersal/pelagic fishes) was influenced by different environmental factors. Therefore, the distribution of individual species or new indicators in diversity should be applied to examine spatio-seasonal variations in fish diversity.

  19. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake.

    PubMed

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency's oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  20. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake

    PubMed Central

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency’s oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  1. TOXICITY OF PENTACHLOROPHENOL TO ENDANGERED AND SURROGATE FISH SPECIES

    EPA Science Inventory

    Water quality criteria (WQC) generally are based on the responses of easily cultured and tested surrogate species. Little is known about the relative sensitivity of surrogate and endangered species. The objective of this study was to compare acute and chronic (early life-stage) ...

  2. Host-Parasite Interactions in Some Fish Species

    PubMed Central

    Khan, R. A.

    2012-01-01

    Host-parasite interactions are complex, compounded by factors that are capable of shifting the balance in either direction. The host's age, behaviour, immunological status, and environmental change can affect the association that is beneficial to the host whereas evasion of the host's immune response favours the parasite. In fish, some infections that induce mortality are age and temperature dependent. Environmental change, especially habitat degradation by anthropogenic pollutants and oceanographic alterations induced by climatic, can influence parasitic-host interaction. The outcome of these associations will hinge on susceptibility and resistance. PMID:22900144

  3. Species composition and biomasses of fishes in tropical seagrasses at Groote Eylandt, northern Australia

    NASA Astrophysics Data System (ADS)

    Blaber, S. J. M.; Brewer, D. T.; Salini, J. P.; Kerr, J. D.; Conacher, C.

    1992-12-01

    The species composition and biomasses of fishes in the tropical seagrasses of Groote Eylandt, northern Australia, were studied in 1989 and 1990. A total of 156 species was recorded. Tall dense seagrass, short seagrass and control (no seagrass) sites in different depths were compared. Shallow (<1 m) sites were dominated by small resident species and juveniles of non-resident species, while deeper waters (to 7 m) were dominated by larger species. Species composition was not significantly different between sites, but species diversity ( H) and evenness ( E) were higher in non-vegetated areas. In slightly deeper water (<2 m) species composition was different between habitats and species diversity was highest in tall seagrass and least in open areas. Most species were more abundant in tall seagrass and least abundant in open areas. Most of the larger fishes, including 11 species of sharks, are piscivores, and most move into shallow sea-grass areas at night, irrespective of tide height. Only five species showed abundance patterns related to tide height and there were no significant seasonal patterns of abundance in any of the communities. The biomasses for all sites and sampling methods were mostly from 1 to 2 g m -2, which is low relative to other inshore tropical areas. The possible causes—the characteristics of adjacent habitats (coral reefs and mangroves) and the role of seagrasses in the life cycle of fishes are discussed. It is suggested that habitat structure is a major determinant of the species composition of fish in tropical seagrass areas, primarily because it affects food availability, both for small residents and juveniles, and for visiting predators.

  4. [Effects of fishing on the marine ecosystem of Beibu Gulf].

    PubMed

    Chen, Zuo-Zhi; Qiu, Yong-Song; Jia, Xiao-Ping; Zhong, Zhi-Hui

    2008-07-01

    By using Ecopath with Ecosim 5.1 software, the Ecosim model of Beibu Gulf marine ecosystem in 1959-1960 was constructed, which included about 20 functional groups such as fishery, marine mammals, sea-birds, sharks, pelagic fishes, demersal fishes, and benthic crustaceans, etc. Through the comparison with the investigation data in 1997-1999, the effects of fishing on the structure and function of Beibu Gulf marine ecosystem were analyzed. The results indicated that with the increasing fishing pressure in past forty years, the ecosystem structure and function shifted drastically, with the biomass of long-lived, high trophic level and piscivorous fishes declined while short-lived and small fishes and benthic invertebrates dominated gradually. The biomass of piscivorous species in 1999 was only 6% of that in 1960, while cephalopods increased 2.7 times or more. The trophic level of the catch declined from 3.2 in 1960 to 2.98 in 1999, which fitted the rule of "fishing down the food web" and suggested that the present exploitation patterns were unsustainable. Based on the data of the 1990s, the changes of the ecosystem under decreasing fishing pressure were predicted. This study validated the feasibility of Ecosim model in predicting the effects of fishing pressure on marine ecosystem.

  5. Species diversity of fishes in naturally acidic lakes in New Jersey

    SciTech Connect

    Graham, J.H. )

    1993-11-01

    Fish communities in acidic lakes of New Jersey have fewer species than do those in more alkaline lakes of comparable size. This conclusion is based on a multiple regression analysis of published data on fish communities, area, and pH in 85 lakes. Some interesting patterns emerge, however, when species are partitioned into introduced and native species. As expected, diversity of introduced species declines with increasing acidity. The number of native species in a particular lake, however, is independent of pH (range of 4.1 to 9.1). Although diversity of native species is not influenced by pH, species composition changes. The lack of a significant relationship between species diversity of native species and pH can be attributed to the replacement of acid-intolerant species by tolerant species. The smaller number of introduced species in acidic lakes is attributable to both fewer species stocked and a greater frequency of failure for those that were stocked. Species introduction records for largemouth bass Micropterus salmoides and bluegill Lepomis macrochirus, which are not native to New Jersey, reveal far more failed introduction in acidic waters than in neutral or alkaline waters. 54 refs., 6 figs., 5 tabs.

  6. Content of essential polyunsaturated fatty acids in three canned fish species.

    PubMed

    Gladyshev, Michail I; Sushchik, Nadezhda N; Makhutova, Olesia N; Kalachova, Galina S

    2009-05-01

    Three canned fish species--Pacific saury (Cololabis saira), Pacific herring (Clupea harengus) and Baltic sprat (Sprattus sprattus)--most common and popular in Russia, were analyzed for fatty acids. Special attention was paid to long-chain essential polyunsaturated fatty acids: eicosapentaenoic acid (20:5omega3) and docosahexaenoic acid (22:6omega3). Sums of eicosapentaenoic acid and docosahexaenoic acid in saury, herring and sprat were, on average, 2.42, 1.80 and 1.43 g/100 g product, respectively. Contents of these essential acids in all the canned fish species were found to be very high compared with many other fish reported in the available literature. All the canned fish appeared to be highly valuable products for human nutrition concerning the content of eicosapentaenoic and docosahexaenoic acids. PMID:18608541

  7. Spatial predictability of juvenile fish species richness and abundance in a coral reef environment

    NASA Astrophysics Data System (ADS)

    Mellin, C.; Andréfouët, S.; Ponton, D.

    2007-12-01

    Juvenile reef fish communities represent an essential component of coral reef ecosystems in the current focus of fish population dynamics and coral reef resilience. Juvenile fish survival depends on habitat characteristics and is, following settlement, the first determinant of the number of individuals within adult populations. The goal of this study was to provide methods for mapping juvenile fish species richness and abundance into spatial domains suitable for micro and meso-scale analysis and management decisions. Generalized Linear Models predicting juvenile fish species richness and abundance were developed according to spatial and temporal environmental variables measured from 10 m up to 10 km in the southwest lagoon of New Caledonia. The statistical model was further spatially generalized using a 1.5-m resolution, independently created, remotely sensed, habitat map. This procedure revealed that : (1) spatial factors at 10 to 100-m scale explained up to 71% of variability in juvenile species richness, (2) a small improvement (75%) was gained when a combination of environmental variables at different spatial and temporal scales was used and (3) the coupling of remotely sensed data, geographical information system tools and point-based ecological data showed that the highest species richness and abundance were predicted along a narrow margin overlapping the coral reef flat and adjacent seagrass beds. Spatially explicit models of species distribution may be relevant for the management of reef communities when strong relationships exist between faunistic and environmental variables and when models are built at appropriate scales.

  8. Trophic niche partitioning of littoral fish species from the rocky intertidal of Helgoland, Germany

    NASA Astrophysics Data System (ADS)

    Hielscher, N. N.; Malzahn, A. M.; Diekmann, R.; Aberle, N.

    2015-12-01

    During a 3-year field study, interspecific and interannual differences in the trophic ecology of littoral fish species were investigated in the rocky intertidal of Helgoland island (North Sea). We investigated trophic niche partitioning of common coexisting littoral fish species based on a multi-tracer approach using stable isotope and fatty acids in order to show differences and similarities in resource use and feeding modes. The results of the dual-tracer approach showed clear trophic niche partitioning of the five target fish species, the goldsinny wrasse Ctenolabrus rupestris, the sand goby Pomatoschistus minutus, the painted goby Pomatoschistus pictus, the short-spined sea scorpion Myoxocephalus scorpius and the long-spined sea scorpion Taurulus bubalis. Both stable isotopes and fatty acids showed distinct differences in the trophic ecology of the studied fish species. However, the combined use of the two techniques added an additional resolution on the interannual scale. The sand goby P. minutus showed the largest trophic plasticity with a pronounced variability between years. The present data analysis provides valuable information on trophic niche partitioning of fish species in the littoral zones of Helgoland and on complex benthic food webs in general.

  9. Mercury and selenium in fish from the Savannah river: species, trophic level, and locational differences.

    PubMed

    Burger, J; Gaines, K F; Boring, C S; Stephens, W L; Snodgrass, J; Gochfeld, M

    2001-10-01

    Levels of contaminants in fish are of considerable interest because of potential effects on the fish themselves, as well as on other organisms that consume them. In this article we compare the mercury levels in muscle tissue of 11 fish species from the Savannah River, as well as selenium levels because of its known protective effect against mercury toxicity. We sampled fish from three stretches of the river: upstream, along, and downstream the Department of Energy's Savannah River Site, a former nuclear material production facility. We test the null hypothesis that there were no differences in mercury and selenium levels in fish tissue as a function of species, trophic level, and location along the river. There were significant interspecific differences in mercury levels, with bowfin (Amia calva) having the highest levels, followed by largemouth bass (Micropterus salmoides) and pickerel (Esox niger). Sunfish (Lepomis spp.) had the lowest levels of mercury. As expected, these differences generally reflected trophic levels. There were few significant locational differences in mercury levels, and existing differences were not great, presumably reflecting local movements of fish between the sites examined. Selenium and mercury concentrations were positively correlated only for bass, perch (Perca flavescens), and red-breasted sunfish (Lepomis auritus). Mercury levels were positively correlated with body mass of the fish for all species except American eel (Anguilla rostrata) and bluegill sunfish (L. macrochirus). The mercury and selenium levels in fish tissue from the Savannah River are similar to or lower than those reported in many other studies, and in most cases pose little risk to the fish themselves or to other aquatic consumers, although levels in bowfin and bass are sufficiently high to pose a potential threat to high-level consumers.

  10. Contaminant sensitivity of threatened and endangered fishes compared to standard surrogate species

    USGS Publications Warehouse

    Sappington, L.C.; Mayer, F.L.; Dwyer, F.J.; Buckler, D.R.; Jones, J.R.; Ellersieck, Mark R.

    2001-01-01

    Standard environmental assessment procedures are designed to protect terrestrial and aquatic species. However, it is not known if endangered species are adequately protected by these procedures. At present, toxicological data obtained from studies with surrogate test fishes are assumed to be applicable to endangered fish species, but this assumption has not been validated. Static acute toxicity tests were used to compare the sensitivity of rainbow trout, fathead minnows, and sheepshead minnows to several federally listed fishes (Apache trout, Lahontan cutthroat trout, greenback cutthroat trout, bonytail chub, Colorado pikeminnow, razorback sucker, Leon Springs pupfish, and desert pupfish). Chemicals tested included carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin. Results indicated that the surrogates and listed species were of similar sensitivity. In two cases, a listed species had a 96-h LC50 (lethal concentration to 50% of the population) that was less than one half of its corresponding surrogate. In all other cases, differences between listed and surrogate species were less than twofold. A safety factor of two would provide a conservative estimate for listed cold-water, warm-water, and euryhaline fish species.

  11. Differentiation of neotropical fish species with statistical analysis of fourier transform infrared photoacoustic spectroscopy data.

    PubMed

    Almeida, Francylaine S; Lima, Sandro M; Andrade, Luis H C; Súarez, Yzel R

    2012-07-01

    Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS) was applied to nineteen fish species in Brazil's Upper Paraná River basin to identify differences in the structural composition of their scales. To differentiate the species, a canonical discriminant analysis was used to indicate the most important absorption peaks in the mid-infrared region. Significant differences were found in the chemical composition of scales among the studied fish species, with Wilk's lambda = 5.2 × 10(-6), F((13,18,394)) = 37.57, and P < 0.001, indicating that O-CH(2) wag at 1396 cm(-1) can be used as a biomarker of this species group. The species could be categorized into four groups according to phylogenetic similarity, suggesting that the O-CH(2) 1396 cm(-1) absorbance is related to the biological traits of each species. This procedure can also be used to complement evolutionary studies.

  12. Measuring marine fish biodiversity: temporal changes in abundance, life history and demography

    PubMed Central

    Hutchings, Jeffrey A; Baum, Julia K

    2005-01-01

    Patterns in marine fish biodiversity can be assessed by quantifying temporal variation in rate of population change, abundance, life history and demography concomitant with long-term reductions in abundance. Based on data for 177 populations (62 species) from four north-temperate oceanic regions (Northeast Atlantic and Pacific, Northwest Atlantic, North mid-Atlantic), 81% of the populations in decline prior to 1992 experienced reductions in their rate of loss thereafter; species whose rate of population decline accelerated after 1992 were predominantly top predators such as Atlantic cod (Gadus morhua), sole (Solea solea) and pelagic sharks. Combining population data across regions and species, marine fish have declined 35% since 1978 and are currently less than 70% of recorded maxima; demersal species are generally at historic lows, pelagic species are generally stable or increasing in abundance. Declines by demersal species have been associated with substantive increases in pelagic species, a pattern consistent with the hypothesis that increases in the latter may be attributable to reduced predation mortality. There is a need to determine the consequences to population growth effected by the reductions in age (21%) and size (13%) at maturity and in mean age (5%) and size (18%) of spawners, concomitant with population decline. We conclude that reductions in the rate of population decline, in the absence of targets for population increase, will be insufficient to effect a recovery of marine fish biodiversity, and that great care must be exercised when interpreting multi-species patterns in abundance. Of fundamental importance is the need to explain the geographical, species-specific and habitat biases that pervade patterns of marine fish recovery and biodiversity. PMID:15814348

  13. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France.

    PubMed

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Dei-Cas, Eduardo; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  14. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France

    PubMed Central

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  15. Chlamydial infections of fish: diverse pathogens and emerging causes of disease in aquaculture species.

    PubMed

    Stride, M C; Polkinghome, A; Nowak, B F

    2014-06-25

    Chlamydial infections of fish are emerging as an important cause of disease in new and established aquaculture industries. To date, epitheliocystis, a skin and gill disease associated with infection by these obligate intracellular pathogens, has been described in over 90 fish species, including hosts from marine and fresh water environments. Aided by advances in molecular detection and typing, recent years have seen an explosion in the description of these epitheliocystis-related chlamydial pathogens of fish, significantly broadening our knowledge of the genetic diversity of the order Chlamydiales. Remarkably, in most cases, it seems that each new piscine host studied has revealed the presence of a phylogenetically unique and novel chlamydial pathogen, providing researchers with a fascinating opportunity to understand the origin, evolution and adaptation of their traditional terrestrial chlamydial relatives. Despite the advances in this area, much still needs to be learnt about the epidemiology of chlamydial infections in fish if these pathogens are to be controlled in farmed environments. The lack of in vitro methods for culturing of chlamydial pathogens of fish is a major hindrance to this field. This review provides an update on our current knowledge of the taxonomy and diversity of chlamydial pathogens of fish, discusses the impact of these infections on the health, and highlights further areas of research required to understand the biology and epidemiology of this important emerging group of fish pathogens of aquaculture species.

  16. Salinity and temperature tolerance of an emergent alien species, the Amazon fish Astronotus ocellatus

    USGS Publications Warehouse

    Gutierrel, Silvia M M; Schofield, Pam; Prodocimo, Viviane

    2016-01-01

    Astronotus ocellatus (oscar), is native to the Amazon basin and, although it has been introduced to many countries, little is known regarding its tolerances for salinity and temperature. In this report, we provide data on the tolerance of A. ocellatus to abrupt and gradual changes in salinity, its high and low temperature tolerance, and information on how salinity, temperature, and fish size interact to affect survival. Fish were able to survive abrupt transfer to salinities as high as 16 ppt with no mortality. When salinity change was gradual (2 ppt/day), fish in the warm-temperature experiment (28°C) survived longer than fish in the cool-temperature experiment (18°C). Larger fish survived longer than smaller ones at the higher salinities when the temperature was warm, but when the temperature was cool fish size had little effect on survival. In the temperature-tolerance experiments, fish survived from 9 to 41°C for short periods of time. Overall, the species showed a wide range of temperature and salinity tolerance. Thus, in spite of the tropical freshwater origin of this species, physiological stress is not likely to hinder its dispersal to brackish waters, especially when temperatures are warm.

  17. Chlamydial infections of fish: diverse pathogens and emerging causes of disease in aquaculture species.

    PubMed

    Stride, M C; Polkinghorne, A; Nowak, B F

    2014-05-14

    Chlamydial infections of fish are emerging as an important cause of disease in new and established aquaculture industries. To date, epitheliocystis, a skin and gill disease associated with infection by these obligate intracellular pathogens, has been described in over 90 fish species, including hosts from marine and fresh water environments. Aided by advances in molecular detection and typing, recent years have seen an explosion in the description of these epitheliocystis-related chlamydial pathogens of fish, significantly broadening our knowledge of the genetic diversity of the order Chlamydiales. Remarkably, in most cases, it seems that each new piscine host studied has revealed the presence of a phylogenetically unique and novel chlamydial pathogen, providing researchers with a fascinating opportunity to understand the origin, evolution and adaptation of their traditional terrestrial chlamydial relatives. Despite the advances in this area, much still needs to be learnt about the epidemiology of chlamydial infections in fish if these pathogens are to be controlled in farmed environments. The lack of in vitro methods for culturing of chlamydial pathogens of fish is a major hindrance to this field. This review provides an update on our current knowledge of the taxonomy and diversity of chlamydial pathogens of fish, discusses the impact of these infections on the health, and highlights further areas of research required to understand the biology and epidemiology of this important emerging group of fish pathogens of aquaculture species.

  18. Effects of low-frequency naval sonar exposure on three species of fish.

    PubMed

    Halvorsen, Michele B; Zeddies, David G; Chicoine, David; Popper, Arthur N

    2013-08-01

    To address growing concern over the impact of anthropogenic sound on fishes, a series of experiments was conducted that exposed several fish species to high-intensity low-frequency naval sonar. This study extends auditory findings by adding largemouth bass, yellow perch, and channel catfish. No effects on hearing were found in largemouth bass and yellow perch and only small effects in channel catfish (a fish with morphological adaptations for enhanced pressure reception). Together with prior findings, these results suggest limited impact on hearing from high-intensity sonar. Susceptibility may be due to genetic stock, developmental conditions, seasonal variation, and/or buoyancy during exposure.

  19. Effects of low-frequency naval sonar exposure on three species of fish.

    PubMed

    Halvorsen, Michele B; Zeddies, David G; Chicoine, David; Popper, Arthur N

    2013-08-01

    To address growing concern over the impact of anthropogenic sound on fishes, a series of experiments was conducted that exposed several fish species to high-intensity low-frequency naval sonar. This study extends auditory findings by adding largemouth bass, yellow perch, and channel catfish. No effects on hearing were found in largemouth bass and yellow perch and only small effects in channel catfish (a fish with morphological adaptations for enhanced pressure reception). Together with prior findings, these results suggest limited impact on hearing from high-intensity sonar. Susceptibility may be due to genetic stock, developmental conditions, seasonal variation, and/or buoyancy during exposure. PMID:23927226

  20. [Inner- and inter-species differences of mercury concentration in common fishes from the Yellow Sea].

    PubMed

    Zhu, Ai-Jia; Xu, Zhan-Zhou; Liu, Gui-Ze; Deng, Li-Jie; Fang, Hong-Da; Huang, Liang-Min

    2014-02-01

    Mercury concentration in marine fishes and its influencing factors are the key problems in the study of mercury biomagnification in marine ecosystems. In order to understand the inner- and inter-species differences of mercury concentration in fishes from the Yellow Sea, a total of 164 marine wild fishes covering nine different species were collected from the area from August to October, 2012. Mercury (total mercury) concentration in fish muscle tissue was measured by a direct mercury analyzer. Body length and wet weight of each sample were also determined. Moreover, feeding habit and trophic level of different species were examined. Hg concentrations (dry weight) in the muscle tissues of the 164 individuals ranged from 0.025 micro x g(-1) to 0.526 microg x g(-1), with an average of (0.124 +/- 0.096) microg x g(-1). By an inner-species analysis, log10 Hg concentration was significantly correlated to their body length and wet weight. Predator fishes with trophic level > 2.8 were more readily to be contaminated by Hg than the filter feeder with trophic level < 2.8. Furthermore, species with higher increasing rate of weight had lower Hg concentration in the muscle due to growth dilution. The results suggest that length and weight are the main factors affecting the inner- species difference of mercury concentration in common fishes from the Yellow Sea, while dietary preference, trophic level and increasing rate of weight are the main factors affecting the inter-species difference from the Yellow Sea.

  1. Projecting future changes in distributions of pelagic fish species of Northeast Pacific shelf seas

    NASA Astrophysics Data System (ADS)

    Cheung, William W. L.; Brodeur, Richard D.; Okey, Thomas A.; Pauly, Daniel

    2015-01-01

    Marine life is being affected by changes in ocean conditions resulting from changes in climate and chemistry triggered by combustion of fossil fuels. Shifting spatial distributions of fish species is a major observed and predicted impact of these oceanographic changes, and such shifts may modify fish community structure considerably in particular locations and regions. We projected future range shifts of pelagic marine fishes of the Northeast Pacific shelf seas by 2050 relative to the present. We combined published data, expert knowledge, and pelagic fish survey data to predict current species distribution ranges of 28 fish species of the Northeast Pacific shelf seas that occur in the epipelagic zone and are well-represented in pelagic fish surveys. These represent a wide spectrum of sub-tropical to sub-polar species, with a wide range of life history characteristics. Using projected ocean condition changes from three different Earth System Models, we simulated changes in the spatial distribution of each species. We show that Northeast Pacific shelf seas may undergo considerable changes in the structure of its pelagic marine communities by mid-21st century. Ensembles of model projections suggest that the distribution centroids of the studied species are expected to shift poleward at an average rate of 30.1 ± 2.34 (S.E.) km decade-1 under the SRES A2 scenario from 2000 to 2050. The projected species range shifts result in a high rate of range expansion of this group of species into the Gulf of Alaska and the Bering Sea. Rate of range contraction of these species is highest at the Aleutian Islands, and in the California Current Large Marine Ecosystem. We also predict increasing dominance of warmer water species in all regions. The projected changes in species assemblages may have large ecological and socio-economic implications through mismatches of co-evolved species, unexpected trophic effects, and shifts of fishing grounds. These results provide hypotheses of

  2. Parasitic infections of two invasive fish species, the Caucasian dwarf goby and the Amur sleeper, in Hungary.

    PubMed

    Antal, László; Székely, Csaba; Molnár, Kálmán

    2015-12-01

    In recent years and decades, two new fish species, the Caucasian dwarf goby (Knipowitschia caucasica) and the Amur sleeper (Perccottus glenii) have become members of the Hungarian fish fauna. In a 14-month study on the parasite fauna of these species, the authors detected 11 parasite species in the Caucasian dwarf goby and 17 species in the Amur sleeper. All parasites found in dwarf goby belong to species commonly occurring also in native Hungarian fishes, but three species (Goussia obstinata, Gyrodactylus perccotti and Nippotaenia mogurndae) collected from the Amur sleeper are introduced species new for the Hungarian fauna.

  3. Trace metals health risk appraisal in fish species of Arabian Sea.

    PubMed

    Yasmeen, Kousar; Mirza, Muhammad Aslam; Khan, Namra A; Kausar, Nazish; Rehman, Atta-Ur; Hanif, Muddasir

    2016-01-01

    Fish is a vital food for humans and many animals. We report an environmental monitoring study to assess the trace metals in fish species caught from Arabian Sea and commercially available in the coastal city Karachi, Pakistan. Heavy metals such as copper, iron, lead and cadmium were determined in the skin, fillet and heart of the fish species Pampus argenteus, Epinephelus chlorostigma, Rachycentron canadum, Scomberomorus commerson, Johnius belangerii, Labeo rohita, Lutjanus argentimaculatus, Trachinotus blochii, Pomadsys olivaceum and Acanthopagrus berda by the atomic absorption spectrophotometer. The concentration (mg kg(-1), dry weight) range was: Cd (0.00-0.041), Cu (0.006-0.189), Fe (0.413-4.952) and Pb (0.00-0.569). Cadmium, copper and iron levels were below the tolerable limits whereas concentration of lead in the skins of S. commerson, E. chlorostigma, J. belangerii, A. berda; L. argentimaculatus, fillets of J. belangerii, E. chlorostigma and in the heart of J. belangerii exceeded the recommended limits. Therefore fish skin should be discouraged as food for humans or animals. The results indicate that a number of fish species have higher concentration of heavy metals dangerous for human health. Since the fish P. olivaceum (Dhotar) has the lowest level of trace metals therefore we recommend it for breeding and human consumption.

  4. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (South Atlantic)

    SciTech Connect

    Hill, J. . School of Forest Resources); Evans, J.W.; Van Den Avyle, M.J. . Georgia Cooperative Fish and Wildlife Research Unit)

    1989-12-01

    This species profile is one of a series on coastal aquatic organisms, principally fish, of sport, commercial, or ecological importance. The profiles are designed to provide coastal managers, engineers, and biologists with a brief comprehensive sketch of the biological characteristics and environmental requirements of the species and to describe how populations of the species may be expected to react to environmental changes caused by coastal development. Each profile has sections on taxonomy, life history, ecological role, environmental requirements, and economic importance, if applicable. Striped bass are native to coastal rivers and nearshore areas. Populations along the South Atlantic coast are primarily riverine. Spawning begins as early as February and peaks at temperatures of 18--21{degrees}C. Spawning usually occurs in downstream portions of river systems having appropriate waterflow, salinity, temperature, and other water quality characteristics. Striped bass populations have declined since the early 1900's, but enough fish have survived or been restored to support commercial fishing in Albemarle Sound and recreational fishing in most major rivers along the South Atlantic coastline. Striped bass are predators and prey on many sympatric invertebrates and fishes. Larval striped bass feed on aquatic invertebrates and switch to feed on small fish as juveniles and adults. 200 refs., 2 figs., 3 tabs.

  5. Trace metals health risk appraisal in fish species of Arabian Sea.

    PubMed

    Yasmeen, Kousar; Mirza, Muhammad Aslam; Khan, Namra A; Kausar, Nazish; Rehman, Atta-Ur; Hanif, Muddasir

    2016-01-01

    Fish is a vital food for humans and many animals. We report an environmental monitoring study to assess the trace metals in fish species caught from Arabian Sea and commercially available in the coastal city Karachi, Pakistan. Heavy metals such as copper, iron, lead and cadmium were determined in the skin, fillet and heart of the fish species Pampus argenteus, Epinephelus chlorostigma, Rachycentron canadum, Scomberomorus commerson, Johnius belangerii, Labeo rohita, Lutjanus argentimaculatus, Trachinotus blochii, Pomadsys olivaceum and Acanthopagrus berda by the atomic absorption spectrophotometer. The concentration (mg kg(-1), dry weight) range was: Cd (0.00-0.041), Cu (0.006-0.189), Fe (0.413-4.952) and Pb (0.00-0.569). Cadmium, copper and iron levels were below the tolerable limits whereas concentration of lead in the skins of S. commerson, E. chlorostigma, J. belangerii, A. berda; L. argentimaculatus, fillets of J. belangerii, E. chlorostigma and in the heart of J. belangerii exceeded the recommended limits. Therefore fish skin should be discouraged as food for humans or animals. The results indicate that a number of fish species have higher concentration of heavy metals dangerous for human health. Since the fish P. olivaceum (Dhotar) has the lowest level of trace metals therefore we recommend it for breeding and human consumption. PMID:27386308

  6. Quantitative determination of rarity of freshwater fishes and implications for imperiled-species designations.

    PubMed

    Pritt, Jeremy J; Frimpong, Emmanuel A

    2010-10-01

    Conserving rare species and protecting biodiversity and ecosystem functioning depends on sound information on the nature of rarity. Rarity is multidimensional and has a variety of definitions, which presents the need for a quantitative classification scheme with which to categorize species as rare or common. We constructed such a classification for North American freshwater fishes to better describe rarity in fishes and provide researchers and managers with a tool to streamline conservation efforts. We used data on range extents, habitat specificities, and local population sizes of North American freshwater fishes and a variety of quantitative methods and statistical decision criteria, including quantile regression and a cost-function algorithm to determine thresholds for categorizing a species as rare or common. Species fell into eight groups that conform to an established framework for rarity. Fishes listed by the American Fisheries Society (AFS) as endangered, threatened, or vulnerable were most often rare because their local population sizes were low, ranges were small, and they had specific habitat needs, in that order, whereas unlisted species were most often considered common on the basis of these three factors. Species with large ranges generally had few specific habitat needs, whereas those with small ranges tended to have narrow habitat specificities. We identified 30 species not designated as imperiled by AFS that were rare along all dimensions of rarity and may warrant further study or protection, and we found three designated species that were common along all dimensions and may require a review of their imperilment status. Our approach could be applied to other taxa to aid conservation decisions and serve as a useful tool for future revisions of listings of fish species. PMID:20337684

  7. Bed disturbance via foraging fish increases bedload transport during subsequent high flows and is controlled by fish size and species

    NASA Astrophysics Data System (ADS)

    Pledger, A. G.; Rice, S. P.; Millett, J.

    2016-01-01

    Benthic foraging by fish can modify the nature and rates of fine sediment accrual and the structure and topography of coarse-grained fluvial substrates, with the potential to alter bed material characteristics, particle entrainment thresholds, and bedload transport fluxes. However, knowledge of what controls the nature, extent, and intensity of benthic foraging and the consequent influence of these controls on geomorphic impact remain rudimentary. An ex-situ experiment utilising Barbel Barbus barbus and Chub Leuciscus cephalus extended previous work by considering the role of fish size and species as controls of sediment disturbance by foraging and the implications for bed material characteristics and bedload transport. In a laboratory flume, changes in bed microtopography and structure were measured when a water-worked bed of 5.6-22.6 mm gravels was exposed to four size classes of Barbel (4-5″, 5-6″, 6-8″, 8-10″ in length) and a single size class of Chub (8-10″). In line with other studies that have investigated animal size as a control of zoogeomorphic agency, increasing the size of Barbel had a significant effect on measured disturbance and transport metrics. Specifically, the area of disturbed substrate, foraging depth, and the fish's impact on microtopographic roughness and imbrication all increased as a function of fish size. In a comparison of the foraging effects of like-sized Barbel and Chub, 8-10″ in length, Barbel foraged a larger area of the test bed and had a greater impact on microtopographic roughness and sediment structure. Relative to water-worked beds that were not foraged, bed conditioning by both species was associated with increased bedload transport during the subsequent application of high flows. However, the bedload flux after foraging by Barbel, which is a specialist benthivore, was 150% higher than that following foraging by Chub, which feed opportunistically from the bed, and the total transported mass of sediment was 98

  8. Biomagnification of DDT and its metabolites in four fish species of a tropical lake.

    PubMed

    Deribe, Ermias; Rosseland, Bjørn Olav; Borgstrøm, Reidar; Salbu, Brit; Gebremariam, Zinabu; Dadebo, Elias; Skipperud, Lindis; Eklo, Ole Martin

    2013-09-01

    The concentrations and biomagnifications of dichlorodiphenyltrichloroethane (DDT) and its metabolites were examined in four fish species (Clarias gariepinus, Oreochromis niloticus, Tilapia zillii, and Carassius auratus) from Lake Ziway, Rift Valley, Ethiopia. Paired stomach content analysis, and stable isotope ratio of nitrogen (δ(15)N, ‰) and carbon (δ(13)C, ‰) were used to study the trophic position of the fish species in the lake. 4,4'-DDE, 4,4'-DDT and 4,4'-DDD were the main DDTs identified in the fish samples, with 4,4'-DDE as the most predominant metabolite, with mean concentration ranging from 1.4 to 17.8 ng g(-1) wet weight (ww). The concentrations of DDTs found in fish from Lake Ziway were, in general lower than those found in most studies carried out in other African Lakes. However, the presence of DDT in all tissue samples collected from all fish species in the lake indicates the magnitude of the incidence. Moreover, the observed mean 4,4'-DDE to 4,4'-DDT ratio below 1 in C. auratus from Lake Ziway may suggest a recent exposure of these species to DDT, indicating that a contamination source is still present. 4,4'-DDE was found to biomagnify in the fish species of the lake, and increases with trophic level, however, the biomagnification rate was generally lower than what has been reported from other areas. Significantly higher concentrations of 4,4'-DDE were found in the top consumer fish in Lake Ziway, C. gariepinus than in O. niloticus (t=2.6, P<0.01), T. zillii (t=2.5, P<0.02) and C. auratus (t=2.2, P<0.03).

  9. Nearshore fish distributions in an Alaskan estuary in relation to stratification, temperature, and salinity

    USGS Publications Warehouse

    Abookire, A.A.; Piatt, J.F.; Robards, M.D.

    2000-01-01

    Fish were sampled with beach seines and small-meshed beam trawls in nearshore (<1 km) and shallow (<25 m) habitats on the southern coast of Kachemak Bay, Cook Inlet, Alaska, from June to August, 1996-1998. Fish distributions among habitats were analysed for species composition, catch-per-unit-effort (CPUE) and frequency of occurrence. Two oceanographically distinct areas of Kachemak Bay were sampled and compared: the Outer Bay and the Inner Bay. Outer Kachemak Bay is exposed and receives oceanic, upwelled water from the Gulf of Alaska, whereas the Inner Bay is more estuarine. Thermohaline properties of bottom water in the Outer and Inner Bay were essentially the same, whereas the Inner Bay water-column was stratified with warmer, less saline waters near the surface. Distribution and abundance of pelagic schooling fish corresponded with area differences in stratification, temperature and salinity. The Inner Bay supported more species and higher densities of schooling and demersal fish than the Outer Bay. Schooling fish communities sampled by beach seine differed between the Outer and Inner Bays. Juvenile and adult Pacific sand lance (Ammodytes hexapterus), Pacific herring (Clupea harengus pallasi), osmerids (Osmeridae) and sculpins (Cottidae) were all more abundant in the Inner Bay. Gadids (Gadidae) were the only schooling fish taxa more abundant in the Outer Bay. Thermohaline characteristics of bottom water were similar throughout Kachemak Bay. Correspondingly, bottom fish communities were similar in all areas. Relative abundances (CPUE) were not significantly different between areas for any of the five demersal fish groups: flatfishes (Pleuronectidae), ronquils (Bathymasteridae), sculpins (Cottidae), gadids (Gadidae) and pricklebacks (Stichaeidae).

  10. Fish species substitution and misnaming in South Africa: An economic, safety and sustainability conundrum revisited.

    PubMed

    Cawthorn, Donna-Mareè; Duncan, John; Kastern, Chris; Francis, Junaid; Hoffman, Louwrens C

    2015-10-15

    While fish species mislabelling has emerged as a global problem, the tracking of improvements or deteriorations in seafood trading practices is challenging without a consistent basis for monitoring. The aim of this study was to develop a robust, repeatable species authentication protocol that could be used to benchmark the current and future incidences of fish mislabelling in South Africa. Using this approach, 149 fish samples collected from restaurants and retailers in three provinces (KwaZulu-Natal, Western Cape and Gauteng) were identified using DNA barcoding, supplemented in certain cases with mitochondrial control region sequencing. Overall, 18% of samples were incorrectly described in terms of species, with similar misrepresentation rates in restaurants (18%) and retail outlets (19%). While there appears to be some improvement in the transparency of local seafood marketing compared to previous studies, the results remain of concern and signal the need for enhanced seafood labelling regulations, monitoring and law enforcement. PMID:25952855

  11. Fish species substitution and misnaming in South Africa: An economic, safety and sustainability conundrum revisited.

    PubMed

    Cawthorn, Donna-Mareè; Duncan, John; Kastern, Chris; Francis, Junaid; Hoffman, Louwrens C

    2015-10-15

    While fish species mislabelling has emerged as a global problem, the tracking of improvements or deteriorations in seafood trading practices is challenging without a consistent basis for monitoring. The aim of this study was to develop a robust, repeatable species authentication protocol that could be used to benchmark the current and future incidences of fish mislabelling in South Africa. Using this approach, 149 fish samples collected from restaurants and retailers in three provinces (KwaZulu-Natal, Western Cape and Gauteng) were identified using DNA barcoding, supplemented in certain cases with mitochondrial control region sequencing. Overall, 18% of samples were incorrectly described in terms of species, with similar misrepresentation rates in restaurants (18%) and retail outlets (19%). While there appears to be some improvement in the transparency of local seafood marketing compared to previous studies, the results remain of concern and signal the need for enhanced seafood labelling regulations, monitoring and law enforcement.

  12. Hierarchical faunal filters: An approach to assessing effects of habitat and nonnative species on native fishes

    USGS Publications Warehouse

    Quist, M.C.; Rahel, F.J.; Hubert, W.A.

    2005-01-01

    Understanding factors related to the occurrence of species across multiple spatial and temporal scales is critical to the conservation and management of native fishes, especially for those species at the edge of their natural distribution. We used the concept of hierarchical faunal filters to provide a framework for investigating the influence of habitat characteristics and normative piscivores on the occurrence of 10 native fishes in streams of the North Platte River watershed in Wyoming. Three faunal filters were developed for each species: (i) large-scale biogeographic, (ii) local abiotic, and (iii) biotic. The large-scale biogeographic filter, composed of elevation and stream-size thresholds, was used to determine the boundaries within which each species might be expected to occur. Then, a local abiotic filter (i.e., habitat associations), developed using binary logistic-regression analysis, estimated the probability of occurrence of each species from features such as maximum depth, substrate composition, submergent aquatic vegetation, woody debris, and channel morphology (e.g., amount of pool habitat). Lastly, a biotic faunal filter was developed using binary logistic regression to estimate the probability of occurrence of each species relative to the abundance of nonnative piscivores in a reach. Conceptualising fish assemblages within a framework of hierarchical faunal filters is simple and logical, helps direct conservation and management activities, and provides important information on the ecology of fishes in the western Great Plains of North America. ?? Blackwell Munksgaard, 2004.

  13. Fish, fans and hydroids: host species of pygmy seahorses

    PubMed Central

    Reijnen, Bastian T.; van der Meij, Sancia E.T.; van Ofwegen, Leen P.

    2011-01-01

    Abstract An overview of the octocoral and hydrozoan host species of pygmy seahorses is provided based on literature records and recently collected field data for Hippocampus bargibanti, Hippocampus denise and Hippocampus pontohi. Seven new associations are recognized and an overview of the so far documented host species is given. A detailed re-examination of octocoral type material and a review of the taxonomic history of the alcyonacean genera Annella (Subergorgiidae) and Muricella (Acanthogorgiidae) are included as baseline for future revisions. The host specificity and colour morphs of pygmy seahorses are discussed, as well as the reliability of (previous) identifications and conservation issues. PMID:21747677

  14. Induction of CYP1A in marine fish species from the Gulf of Mexico

    SciTech Connect

    Willett, K.L.; McDonald, S.; Narasimhan, T.R.; Connor, K.; Safe, S.; Kennicutt, M.C.

    1994-12-31

    Ethoxyresorufin O-deethylase (EROD) and aryl hydrocarbon hydroxylase (AHH) activities in over twenty species of fish, invertebrates, and fauna were used as biomarkers of exposure to polynuclear aromatic hydrocarbons (PAHs) in the Gulf of Mexico. The highest AHH and EROD activities in fish were detected in pinfish, tile, flounder, and hardhead catfish. In contrast, minimal to non-detectable induction was observed in invertebrates. Analysis of induction results showed that with the exception of a few species, there was a linear correlation between the induction of EROD vs AHH activity suggesting that ethoxyresorufin and benzo[a]pyrene serve as comparable substrates for CYP1A. In contrast, AHH activity was not induced in either hardhead catfish or lizard fish; whereas, the levels of EROD activity varied from 4.0 to 155 pmol/min/mg. These results indicate that there is some species-dependent variability in the catalytic activity of CYP1A protein in marine fish species, and that more reliable indicators of exposure to PAHs such as CYP1A mRNA levels should also be utilized in environmental monitoring studies. The results of Northern analysis of CYP1A mRNA levels in fish will be presented.

  15. Mercury and selenium levels in 19 species of saltwater fish from New Jersey as a function of species, size, and season.

    PubMed

    Burger, Joanna; Gochfeld, Michael

    2011-03-15

    There are few data on risks to biota and humans from mercury levels in saltwater fish. This paper examines mercury and selenium levels in muscle of 19 species of fish caught by recreational fisherfolk off the New Jersey shore, as a function of species of fish, size, and season, and risk of mercury to consumers. Average mercury levels ranged from 0.01 ppm (wet weight) (Menhaden Brevoortia tyrannus) to 1.83 ppm (Mako Shark Isurus oxyrinchus). There were four categories of mercury levels: very high (only Mako), high (averaging 0.3-0.5 ppm, 3 species), medium (0.14-0.20 ppm, 10 species), and low (below 0.13 ppm, 5 species). Average selenium levels for the fish species ranged from 0.18 ppm to 0.58 ppm, and had lower variability than mercury (coefficient of variation=38.3 vs 69.1%), consistent with homeostatic regulation of this essential element. The correlation between mercury and selenium was significantly positive for five and negative for two species. Mercury levels showed significant positive correlations with fish size for ten species. Size was the best predictor of mercury levels. Selenium showed no consistent relationship to fish length. Over half of the fish species had some individual fish with mercury levels over 0.3 ppm, and a third had fish with levels over 0.5 ppm, levels that pose a human health risk for high end consumers. Conversely several fish species had no individuals above 0.5 ppm, and few above 0.3 ppm, suggesting that people who eat fish frequently, can reduce their risk from mercury by selecting which species (and which size) to consume. Overall, with the exception of shark, Bluefin Tuna (Thunnus thynnus), Bluefish (Pomatomus saltatrix) and Striped Bass (Morone saxatilis), the species sampled are generally medium to low in mercury concentration. Selenium:mercury molar ratios were generally above 1:1, except for the Mako shark. PMID:21292311

  16. Multi-Scale Approach for Predicting Fish Species Distributions across Coral Reef Seascapes

    PubMed Central

    Pittman, Simon J.; Brown, Kerry A.

    2011-01-01

    Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5–300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided ‘outstanding’ model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided ‘outstanding’ model predictions for two of five species, with the remaining three models considered ‘excellent’ (AUC = 0.8–0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support

  17. Shifts in a Pacific ocean fish assemblage: the potential influence of exploitation.

    PubMed

    Levin, Phillip S; Holmes, Elizabeth E; Piner, Kevin R; Harvey, Chris J

    2006-08-01

    As in many regions of the world, marine fishes and invertebrates along the Pacific coast of the United States have long been subjected to overexploitation. Despite this history, however we lack basic information on the current status of many fishes along this coastline. We used data from a quarter century of fishery-independent, coast-wide trawl surveys to study systematically the demersal fish assemblages along the U.S. Pacific coast. We documented fundamental shifts in this fish assemblage. Average fish size, across a diversity of species, has declined 45% in 21 years. There have been major shifts in the constituent species of the assemblage, with some species achieving annual population growth rates of >10% and others declining in excess of 10% per year Annual rate of change in population size appeared to be a function of life history interacting with fishing pressure. Negative trends in population size were particularly apparent in rockfish (Sebastes spp.). However across all taxa examined, trends in population size were associated with size of maturity, maximum size, and growth rate. Trends in population size were associated inversely with harvest levels, but stocks that mature late tended to decline faster than would be predicted by catch rates alone. Our results are disquieting because they raise the possibility that fishing-induced phase shifts in fish communities may affect the recovery offishes, even after the implementation of severe fishing restrictions.

  18. Identification of novel and zoonotic Cryptosporidium species in fish from Papua New Guinea.

    PubMed

    Koinari, M; Karl, S; Ng-Hublin, J; Lymbery, A J; Ryan, U M

    2013-11-15

    There is still limited information on the distribution of Cryptosporidium species and genotypes in fish. The present study investigated the prevalence of Cryptosporidium species in cultured freshwater (n=132), wild freshwater (n=206) and wild marine (n=276) fish in Papua New Guinea (PNG) by PCR screening at the 18S rRNA locus. A total of seven fish (2 cultured freshwater, 1 wild freshwater and 4 wild marine fish) were identified as positive for Cryptosporidium. Specifically, Cryptosporidium was found in four different host species (Nile tilapia, Oreochromis niloticus; silver barb, Puntius gonionotus; mackerel scad, Decapterus maracellus and oblong silver biddy, Gerres oblongus), giving an overall prevalence of 1.14% (95% CI: 0.3-2%, n=7/614). Of the seven positive isolates, five were identified as C. parvum and two were a novel piscine genotype, which we have named piscine genotype 8. Piscine genotype 8 was identified in two marine oblong silver biddies and exhibited 4.3% genetic distance from piscine genotype 3 at the 18S locus. Further subtyping of C. parvum isolates at the 60 kDa glycoprotein (gp60) locus identified 3 C. parvum subtypes (IIaA14G2R1, IIaA15G2R1 and IIaA19G4R1) all of which are zoonotic and a C. hominis subtype (IdA15G1). The zoonotic Cryptosporidium were identified in fish samples from all three groups; cultured and wild freshwater and wild marine fish. Detection of Cryptosporidium among aquaculture fingerlings warrants further research to gain a better understanding of the epidemiology of Cryptosporidium infection in cultured fish. The identification of zoonotic Cryptosporidium genotypes in fish from PNG has important public health implications and should be investigated further.

  19. Experimental infection of Aphanomyces invadans and susceptibility in seven species of tropical fish

    PubMed Central

    Afzali, Seyedeh F.; Mohd Daud, Hassan Hj.; Sharifpour, Issa; Afsharnasab, Mohammad; Shankar, Shiv

    2015-01-01

    Aim: Epizootic ulcerative syndrome (EUS) causes by aquatic oomycete fungus, Aphanomyces invadans is a dangerous fish disease of a wide range of fresh and brackish water, wild and farmed fish throughout the world. The objective of the present study was to determine the susceptibility of a number of tropical fish species to the EUS and compare the severity of infection between experimental groups. Materials and Methods: Snakehead, Channa striata (Bloch, 1793); snakeskin gourami, Trichopodus pectoralis (Regan, 1910); koi carp, Cyprinus carpio (Linnaeus, 1758); broadhead catfish, Clarias macrocephalus (Günther, 1864); goldfish, Carassius auratus (Linnaeus, 1758); climbing perch, Anabas testudineus (Bloch, 1792); and Nile tilapia, Oreochromis niloticus (Linnaeus, 1758) were challenged by intramuscular injection using zoospores of Aphanomyces invadans (NJM9701). The infected fish skins and muscles were examined for EUS histopathological characteristics, and the results on the severity of lesions and mortality were analyzed using SPSS program. Results: All zoospore-injected fish were shown to be susceptible to the EUS infection except Nile tilapia. Although, the general histopathological pattern was similar in the zoospore-injected group, but there were some variation in granulomatous reaction, that is the presence or absence of giant cells, and time of mortality were detected. The result of statistical analysis showed that there was a significant difference between species, (c2=145.11 and p<0.01). Conclusion: Gourami, koi carp, and catfish were demonstrated to be highly susceptible while goldfish and climbing perch were found to be moderately susceptible to the EUS infection. These findings suggested that the cellular response of fish to mycotic infection and granulomatous reaction varied in different fish species, which could not be an indicator of susceptibility or resistant to the EUS itself, although it was shown that the granulation rate and the level of maturity

  20. Digenean species diversity in teleost fishes from the Gulf of Gabes, Tunisia (Western Mediterranean)

    PubMed Central

    Derbel, H.; Châari, M.; Neifar, L.

    2012-01-01

    This study is the first attempt to survey the diversity of fish digeneans in the Gulf of Gabes (southern coast of Tunisia). A total of 779 fishes belonging to 32 species were sampled. 53 species of Digenea belonging to 15 families were recorded. Among these species, 24 are reported for the first time from the coast of Tunisia. We report one new host record, Lecithochirium sp. from Sardinella aurita. The Hemiuridae is the dominant family. A host-parasite list is presented with the information on the prevalence, abundance and mean intensity of each species collected. The diversity of Digenea is compared with other localities in the Mediterranean Sea and the northern east of Tunisia. The Gulf of Gabes shows the lowest diversity linked to the anthropogenic activities and impact of exotic species. The use of Digenea as indicators of the state of the ecosystem is discussed. PMID:22550623

  1. Genetic diversity and species diversity of stream fishes covary across a land-use gradient

    USGS Publications Warehouse

    Blum, M.J.; Bagley, M.J.; Walters, D.M.; Jackson, S.A.; Daniel, F.B.; Chaloud, D.J.; Cade, B.S.

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems. ?? 2011 Springer-Verlag.

  2. Assessment of fish abundance and species composition at selected sites in South Dakota: an overview

    USGS Publications Warehouse

    Harwood, Alison

    2010-01-01

    The U.S. Geological Survey (USGS) conducted surveys of streams throughout the State of South Dakota during 2008-09 as part of the U.S. Environmental Protection Agency?s (USEPA) National Rivers and Streams Assessment (NRSA) Program. During 2008-09, as part of the stream assessment, the USGS completed surveys of fish populations and species composition at 64 sites. Fish were inventoried at 60 of the 64 sites, but not at four of the sites because water was too low to sustain fish or specific conductivity was too high to electroshock effectively. Four of the sites were surveyed in 2000-04 during the USEPA's Environmental Monitoring and Assessment Program-West (EMAP-West) project. Two wadeable sites and two boatable sites were revisited for quality-assurance/quality-control requirements. During the study, both wadeable and boatable streams were sampled using electrofishing equipment and methods. Of the 64 sites, 62 were wadeable and 2 were boatable. Procedures for sampling wadeable streams differed slightly from procedures for boatable streams. Backpack electrofishing equipment was used for wadeable streams, whereas boat electrofishing equipment was used for boatable streams. Wadeable streams also were fished in an opposite direction than boatable streams. Several species of fish were collected during the NRSA. Species diversity ranged from 0-11 species in wadeable streams and from 6-26 species in boatable streams. Many common species were sampled during the study. The most frequently sampled fish was the sand shiner (Notropis stramineus), with 609 individuals sampled. In contrast, only one heritage species, the skipjack herring (Alosa chrysochloris), was identified during 2008-09. Common anomalies found in fish caught were parasitic lesions, "black spot disease," and tumors. When comparing the fish sampling results for the four sites visited in both 2000-04 and in 2008-09, more individuals and species were collected during 2008-09 than in 2000-04 at two sites, whereas

  3. Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.

    PubMed

    King, Gregory D; Chapman, Jacqueline M; Cooke, Steven J; Suski, Cory D

    2016-03-15

    Anthropogenic alterations to terrestrial habitat (e.g., urbanization, deforestation, agriculture) can have a variety of negative effects on watercourses that flow through disturbed landscapes. Currently, the relationship between stream habitat quality and fish condition remains poorly understood. The use of physiological metrics such as glucocorticoids (GCs) provides a useful tool for quantifying these effects by relating the health of resident fishes to stream quality. To date, however, most studies that measure GC levels tend to focus on a single, large-bodied species, rather than evaluating how GCs may be influenced differently between species in a community. In this study, we measured cortisol, the glucocorticoid found in fishes, from fish tissues to quantify effects of habitat degradation on the glucocorticoid function of five species of juvenile and small-bodied stream fish which differ ecologically and phylogenetically. Largemouth bass Micropterus salmoides, brown bullhead Ameiurus nebulosus, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and logperch Percina caprodes were sampled from a reference and a degraded stream. Upon capture, fish were either euthanized immediately, to quantify baseline stress parameters, or following a standardized stressor, to quantify GC responsiveness. As a result of stream degradation largemouth bass possessed altered baseline GC concentrations and brown bullhead and logperch had altered GC responses to a stressor. White sucker and pumpkinseed did not demonstrate any alteration in baseline or post-stress GC concentrations. Together, our results show that different species residing in identical habitats can demonstrate a variety of responses to environmental stress, highlighting the variation in physiological ability to cope under poor environmental conditions, as well as the difficulty of predicting GC dynamics in wild animals. Understanding the relationships between GC function, habitat quality, and

  4. Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.

    PubMed

    King, Gregory D; Chapman, Jacqueline M; Cooke, Steven J; Suski, Cory D

    2016-03-15

    Anthropogenic alterations to terrestrial habitat (e.g., urbanization, deforestation, agriculture) can have a variety of negative effects on watercourses that flow through disturbed landscapes. Currently, the relationship between stream habitat quality and fish condition remains poorly understood. The use of physiological metrics such as glucocorticoids (GCs) provides a useful tool for quantifying these effects by relating the health of resident fishes to stream quality. To date, however, most studies that measure GC levels tend to focus on a single, large-bodied species, rather than evaluating how GCs may be influenced differently between species in a community. In this study, we measured cortisol, the glucocorticoid found in fishes, from fish tissues to quantify effects of habitat degradation on the glucocorticoid function of five species of juvenile and small-bodied stream fish which differ ecologically and phylogenetically. Largemouth bass Micropterus salmoides, brown bullhead Ameiurus nebulosus, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and logperch Percina caprodes were sampled from a reference and a degraded stream. Upon capture, fish were either euthanized immediately, to quantify baseline stress parameters, or following a standardized stressor, to quantify GC responsiveness. As a result of stream degradation largemouth bass possessed altered baseline GC concentrations and brown bullhead and logperch had altered GC responses to a stressor. White sucker and pumpkinseed did not demonstrate any alteration in baseline or post-stress GC concentrations. Together, our results show that different species residing in identical habitats can demonstrate a variety of responses to environmental stress, highlighting the variation in physiological ability to cope under poor environmental conditions, as well as the difficulty of predicting GC dynamics in wild animals. Understanding the relationships between GC function, habitat quality, and

  5. Distribution and habitat association of benthic fish on the Condor seamount (NE Atlantic, Azores) from in situ observations

    NASA Astrophysics Data System (ADS)

    Porteiro, Filipe M.; Gomes-Pereira, José N.; Pham, Christopher K.; Tempera, Fernando; Santos, Ricardo S.

    2013-12-01

    Distribution of fish assemblages and habitat associations of demersal fishes on the Condor seamount were investigated by analyzing in situ video imagery acquired by the Remotely-Operated Vehicles ROV SP300 and Luso 6000. A total of 51 fish taxa from 32 families were inventoried. Zooplanktivores (10 species) were the most abundant group followed by carnivores (23 species) and benthivores (18 species). Non-metric multidimensional scaling (MDS) analyses were performed on dive segments to visualize the spatial relationships between species and habitat type, substrate type or depth, with depth being the most significant parameter influencing fish distribution. Four major fish groups were identified from their vertical distribution alone: summit species (generally to <300 m depth); broad ranging species (ca. from 200 to 800 m); intermediate ranging slope species (ca. from 400 m to 800-850 m); and deeper species (800-850-1100 m). The fish fauna observed at the summit is more abundant (15.2 fish/100 m2) and habitat-specialized than the fish observed along the seamount slope. Down the seamount slope, the summit fish assemblage is gradually replaced as depth increases, with an overall reduction in abundance. On the summit, three species (Callanthias ruber, Anthias anthias and Lappanella fasciata) had higher affinity to coral habitats compared to non-coral habitats. A coherent specialized fish assemblage associated to coral habitats could not be identified, because most species were observed also in non-coral areas. On the seamount's slope (300-1100 m), no relationship between fish and coral habitats could be identified, although these might occur at larger scales. This study shows that in situ video imagery complements traditional fishing surveys, by providing information on unknown or rarely seen species, being fundamental for the development of more comprehensive ecosystem-based management towards a sustainable use of the marine environment.

  6. The fish fauna of Anambra river basin, Nigeria: species abundance and morphometry.

    PubMed

    Odo, Gregory Ejikeme; Didigwu, Nwani Christopher; Eyo, Joseph Effiong

    2009-01-01

    The fish yields of most Nigeria inland waters are generally on the decline for causes that may range from inadequate management of the fisheries to degradation of the water bodies. Sustainable exploitation requires knowledge of the ichthyofaunal composition in the water bodies. We did a survey of fish species in Anambra river basin for 22 months. Fish samples were collected using four different gears -hook and line of size 13, caste nets, gill nets, and cages of mesh sizes of 50 mm, 75 mm, and 100 mm each. We recorded 52 fish species belonging to 17 families: 171, 236, and 169 individuals at Ogurugu, Otuocha, and Nsugbe stations respectively. Two families, Characidae, 19.5%, and Mochokidae, 11.8%, constituted the dominant fish families in the river. The dominant fish species were Citherinus citherius, 9.02%, and Alestes nurse, 7.1%. Other fish species with significant abundance were Synodontis clarias 6.9%, Macrolepidotus curvier 5.7%, Labeo coubie 5.4%, Distichodus rostrtus 4.9%, and Schilbe mystus 4.5%. The meristic features of the two most abundant fish species caught are as follows: Citharinus citharius dorsal fins 20, anal fins 30, caudal fins 21, pectoral fins, 9 and 8 ventral fins, and Alestes nurse 10 dorsal fins, 14 anal fins, 31 caudal fins, 7 pectoral fins and 6 ventral fins. The morphometric features of the two most abundant fish species are Citharinus citharius total length 300 mm, standard length 231 mm, head length 69 mm, body length 101 mm, body girth 176 mm, body weight 900 mg. Alestes nurse total length 200, standard length 140 mm, head length 60 mm, body length 80 mm, body girth 120 mm, body weight 400 mg. The most abundant animal utilizing the basin was Ardea cinerea (D3) with 22.2% occurrence (D4) and this was followed by Caprini with 13.51%, and Varanus niloticus, 10.04%. The least abundant animals utilizing basin were Chephalophus rufilatus, and Erythrocebus patas, with 0.58% each of occurrence. PMID:19637699

  7. Resilience of predators to fishing pressure on coral patch reefs

    USGS Publications Warehouse

    Schroeder, R.E.; Parrish, J.D.

    2005-01-01

    Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could

  8. Characterization factors for water consumption and greenhouse gas emissions based on freshwater fish species extinction.

    PubMed

    Hanafiah, Marlia M; Xenopoulos, Marguerite A; Pfister, Stephan; Leuven, Rob S E W; Huijbregts, Mark A J

    2011-06-15

    Human-induced changes in water consumption and global warming are likely to reduce the species richness of freshwater ecosystems. So far, these impacts have not been addressed in the context of life cycle assessment (LCA). Here, we derived characterization factors for water consumption and global warming based on freshwater fish species loss. Calculation of characterization factors for potential freshwater fish losses from water consumption were estimated using a generic species-river discharge curve for 214 global river basins. We also derived characterization factors for potential freshwater fish species losses per unit of greenhouse gas emission. Based on five global climate scenarios, characterization factors for 63 greenhouse gas emissions were calculated. Depending on the river considered, characterization factors for water consumption can differ up to 3 orders of magnitude. Characterization factors for greenhouse gas emissions can vary up to 5 orders of magnitude, depending on the atmospheric residence time and radiative forcing efficiency of greenhouse gas emissions. An emission of 1 ton of CO₂ is expected to cause the same impact on potential fish species disappearance as the water consumption of 10-1000 m³, depending on the river basin considered. Our results make it possible to compare the impact of water consumption with greenhouse gas emissions.

  9. Sperm quality and cryopreservation of Brazilian freshwater fish species: a review.

    PubMed

    Viveiros, A T M; Godinho, H P

    2009-03-01

    The Brazilian freshwater fish diversity is the richest in the world. Only 0.7% of all Brazilian species have had any aspect of their sperm biology addressed up to this date. The majority of the fish species described in this review migrate during the spawning season (a phenomenon known as piracema). Urbanization, pollution, hydroelectric dams and deforestation are some of the causes of stock depletion or even local extinction of some of these species. The knowledge concerning sperm quality and minimum sperm:egg ratio is important to maximize the use of males without reducing hatching rates. Furthermore, sperm cryopreservation and gene banking can guarantee the conservation of genetic diversity and development of adequate breeding programs of native fish species. In this review, we present and evaluate the existing information on Brazilian fish species that have been subject to sperm quality and cryopreservation studies. The following parameters were evaluated: volume of extractable sperm, sperm motility, sperm concentration, freezing media, freezing methods, and post-thaw sperm quality. Although the existing protocols yield relatively high post-thaw motility and fertilization rates, the use of cryopreserved sperm in routine hatchery production is still limited in Brazil.

  10. Comparative study of infection with Tetrahymena of different ornamental fish species.

    PubMed

    Sharon, G; Pimenta Leibowitz, M; Chettri, J Kumar; Isakov, N; Zilberg, D

    2014-01-01

    Tetrahymena is a ciliated protozoan that can infect a wide range of fish species, although it is most commonly reported in guppies (Poecilia reticulata). The aim of this study was to compare the susceptibility to infection with Tetrahymena of five different ornamental fish species from two different super orders. The species examined were platy (Xiphophorus), molly (Poecilia sphenops) and angelfish (Pterophyllum scalare) of the Acanthopterygii super order (which also includes guppies) and goldfish (Carassius auratus auratus) and koi carp (Cyprinus carpio) of the Ostariophysi super order. These two super orders are phylogenetically distant from each other. Infection with Tetrahymena resulted in parasite invasion of internal organs, skin and muscle in all fish species. A relatively strong inflammatory response was observed in infected goldfish and koi, with negligible response in fish species of the Acanthopterygii super order. Guppies were the most susceptible to Tetrahymena infection, exhibiting a mortality rate of 87% and 100% in two separate experiments. A high mortality rate was also observed in platy (77%), while that of molly and angelfish was significantly lower (23% and 33%, respectively). Goldfish and koi carp were less susceptible to infection compared with guppies (24% and 59% mortality, respectively). Immunization studies revealed that the Tetrahymena are immunogenic, since infection of koi carp increased their Tetrahymena immobilization response by approximately three-fold at 3 weeks post infection, while immunization with Tetrahymena plus adjuvant increased their immobilization response by approximately 30-fold.

  11. Testing the influence of environmental heterogeneity on fish species richness in two biogeographic provinces

    PubMed Central

    Proulx, Raphaël; Cabana, Gilbert; Rodríguez, Marco A.

    2015-01-01

    Environmental homogenization in coastal ecosystems impacted by human activities may be an important factor explaining the observed decline in fish species richness. We used fish community data (>200 species) from extensive surveys conducted in two biogeographic provinces (extent >1,000 km) in North America to quantify the relationship between fish species richness and local (grain <10 km2) environmental heterogeneity. Our analyses are based on samples collected at nearly 800 stations over a period of five years. We demonstrate that fish species richness in coastal ecosystems is associated locally with the spatial heterogeneity of environmental variables but not with their magnitude. The observed effect of heterogeneity on species richness was substantially greater than that generated by simulations from a random placement model of community assembly, indicating that the observed relationship is unlikely to arise from veil or sampling effects. Our results suggest that restoring or actively protecting areas of high habitat heterogeneity may be of great importance for slowing current trends of decreasing biodiversity in coastal ecosystems. PMID:25699209

  12. Molecular characterization of anisakid nematode larvae from 13 species of fish from Western Australia.

    PubMed

    Jabbar, Abdul; Fong, Rachel W J; Kok, Kia X; Lopata, Andreas L; Gasser, Robin B; Beveridge, Ian

    2013-02-15

    This study characterized anisakid nematodes in estuarine and near-shore species of fish in southern Western Australia. A total of 108 fish representing 13 species were examined for anisakid larvae. For the molecular characterization of anisakid larvae (n=218), we used PCR-coupled mutation scanning-sequencing-phylogenetic analyses of sequence variation in the internal transcribed spacers of nuclear ribosomal DNA. With the exception of Sillaginoides punctatus and Sillago schomburgkii, all the fish species examined (Aldrichetta forsteri, Arripis georgianus, Hyporhamphus regularis, Mugil cephalus, Platycephalus speculator, Pomatomus saltatrix, Pseudocaranx dentex, Pseudocaranx wrighti, Thysanophrys cirronatus, Trachurus novaezeelandiae and Upeneichthys lineatus) harboured at least one species of anisakid. Mutation scanning analysis identified 11 different genotypes of anisakid larvae. Phylogenetic analyses of the sequence data, employing reference sequence data for a wide range of anisakids (31 species) from public databases, revealed the presence of Anisakis pegreffii (n=3), Contracaecum multipapillatum (49), Contracaecum ogmorhini (1), Hysterothylacium larval type IV (82), Hysterothylacium larval type Vb (14), Hysterothylacium larval type VIII (3), Hysterothylacium larval type X (65), and Terranova type I (1) in the fish examined. The present study provides valuable information on the diversity of anisakids in southern Western Australia and also a basis for future investigations to assess the public health significance of these parasites. PMID:23353682

  13. The Lake Huron pelagic fish community: persistent spatial pattern along biomass and species composition gradients

    USGS Publications Warehouse

    Warner, D.M.; Schaeffer, J.S.; O'Brien, T. P.

    2009-01-01

    Spatial patterns in the biomass of pelagic fish in Lake Huron have persisted over 10 years even though biomass decreased 86% and the fish community shifted from dominance by non-native species (rainbow smelt, Osmerus mordax) to dominance by native species (bloater, Coregonus hoyi). Based on multivariate analyses of acoustic biomass data and abiotic variables from the years 1997, 2004, 2005, and 2007, the strength of relationships between abiotic variables (primarily bottom depth) and fish community composition gradients decreased with fish biomass, suggesting that at high biomass, the influence of the measured abiotic variables is minimal. We observed consistently higher biomass in the North Channel and Georgian Bay than in the Main Basin, and as a result, we conclude that these smaller basins are likely important contributors to lakewide fish biomass, production, and dynamics. These results suggest that at current biomass levels, efforts to understand ecology, population dynamics, and lakewide abundance need to incorporate the effects of depth and geographic variation on fish distributions and ecology.

  14. Effects of exposure to seismic airgun use on hearing of three fish species

    NASA Astrophysics Data System (ADS)

    Popper, Arthur N.; Smith, Michael E.; Cott, Peter A.; Hanna, Bruce W.; MacGillivray, Alexander O.; Austin, Melanie E.; Mann, David A.

    2005-06-01

    Seismic airguns produce considerable amounts of acoustic energy that have the potential to affect marine life. This study investigates the effects of exposure to a 730 in.3 airgun array on hearing of three fish species in the Mackenzie River Delta, the northern pike (Esox lucius), broad whitefish (Coregonus nasus), and lake chub (Couesius plumbeus). Fish were placed in cages in the 1.9 m of water and exposed to five or 20 airgun shots, while controls were placed in the same cage but without airgun exposure. Hearing in both exposed and control fish were then tested using the auditory brainstem response (ABR). Threshold shifts were found for exposed fish as compared to controls in the northern pike and lake chub, with recovery within 24 hours of exposure, while there was no threshold shift in the broad whitefish. It is concluded that these three species are not likely to be substantially impacted by exposure to an airgun array used in a river seismic survey. Care must be taken, however, in extrapolation to other species and to fishes exposed to airguns in deeper water or where the animals are exposed to a larger number of airgun shots over a longer period of time. .

  15. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (South Florida)

    SciTech Connect

    Zale, A.V.; Merrifield, S.G. )

    1989-07-01

    Species profiles are literature summaries of the taxonomy, morphology, distribution, life history, habitats, and environmental requirements of coastal species of fishes and aquatic invertebrates. They are designed to assist in environmental impact assessment. The tarpon and ladyfish are popular gamefishes. Adults spawn offshore. Larval and juvenile stages inhabit coastal marshes and mangroves. Both species are thermophilic (preferring warm water), euryhaline (tolerant of a wide range of salinity), and are capable of surviving at low oxygen concentrations. Wetlands destruction and degradation negatively affect these species by reducing nursery areas. 3 figs.

  16. Fish species from a micro-tidal delta in the Caribbean Sea.

    PubMed

    Correa-Herrera, T; Jiménez-Segura, L F; Barletta, M

    2016-07-01

    A total of 66 fish species belonging to 32 families were recorded between November 2012 and April 2014 in the southern arm of the delta to the Atrato River. Total length (LT ; range: 1·7-48 cm), total mass (MT ), LT and MT relationships (b values ranged from 1·8 to 3·7, mostly with negative allometric growth), and LT frequency (for 25 species) were estimated for freshwater, estuarine and marine species. LT and MT of Porichthys pauciradiatus and Membras argentea are given for the first time and maximum LT records for 14 species exceed those in the literature.

  17. Two new species of Phyllodistomum Braun, 1899 (Trematoda: Gorgoderidae Looss, 1899) from Great Barrier Reef fishes.

    PubMed

    Ho, Hei Wa; Bray, Rodney A; Cutmore, Scott C; Ward, Selina; Cribb, Thomas H

    2014-01-01

    Two new species of Phyllodistomum Braun, 1899 are described from the urinary bladder of fishes of the Great Barrier Reef. Phyllodistomum hoggettae n. sp. is described from Plectropomus leopardus (leopard coralgrouper) (Serranidae) and P. vaili n. sp. is described from Mulloidichthys vanicolensis (yellowfin goatfish) and M. flavolineatus (yellowstripe goatfish) (Mullidae). These species are compared with 26 previously described marine Phyllodistomum species and found to be distinct in combinations of body shape, sucker ratio and shape of the gonads. Preliminary molecular data also demonstrate that they are distinct from each other and for those other species for which data are available. PMID:24871750

  18. Fish species from a micro-tidal delta in the Caribbean Sea.

    PubMed

    Correa-Herrera, T; Jiménez-Segura, L F; Barletta, M

    2016-07-01

    A total of 66 fish species belonging to 32 families were recorded between November 2012 and April 2014 in the southern arm of the delta to the Atrato River. Total length (LT ; range: 1·7-48 cm), total mass (MT ), LT and MT relationships (b values ranged from 1·8 to 3·7, mostly with negative allometric growth), and LT frequency (for 25 species) were estimated for freshwater, estuarine and marine species. LT and MT of Porichthys pauciradiatus and Membras argentea are given for the first time and maximum LT records for 14 species exceed those in the literature. PMID:27401485

  19. Two new species of Phyllodistomum Braun, 1899 (Trematoda: Gorgoderidae Looss, 1899) from Great Barrier Reef fishes.

    PubMed

    Ho, Hei Wa; Bray, Rodney A; Cutmore, Scott C; Ward, Selina; Cribb, Thomas H

    2014-03-19

    Two new species of Phyllodistomum Braun, 1899 are described from the urinary bladder of fishes of the Great Barrier Reef. Phyllodistomum hoggettae n. sp. is described from Plectropomus leopardus (leopard coralgrouper) (Serranidae) and P. vaili n. sp. is described from Mulloidichthys vanicolensis (yellowfin goatfish) and M. flavolineatus (yellowstripe goatfish) (Mullidae). These species are compared with 26 previously described marine Phyllodistomum species and found to be distinct in combinations of body shape, sucker ratio and shape of the gonads. Preliminary molecular data also demonstrate that they are distinct from each other and for those other species for which data are available.

  20. Global mismatch between species richness and vulnerability of reef fish assemblages.

    PubMed

    Parravicini, Valeriano; Villéger, Sébastien; McClanahan, Tim R; Arias-González, Jesus Ernesto; Bellwood, David R; Belmaker, Jonathan; Chabanet, Pascale; Floeter, Sergio R; Friedlander, Alan M; Guilhaumon, François; Vigliola, Laurent; Kulbicki, Michel; Mouillot, David

    2014-09-01

    The impact of anthropogenic activity on ecosystems has highlighted the need to move beyond the biogeographical delineation of species richness patterns to understanding the vulnerability of species assemblages, including the functional components that are linked to the processes they support. We developed a decision theory framework to quantitatively assess the global taxonomic and functional vulnerability of fish assemblages on tropical reefs using a combination of sensitivity to species loss, exposure to threats and extent of protection. Fish assemblages with high taxonomic and functional sensitivity are often exposed to threats but are largely missed by the global network of marine protected areas. We found that areas of high species richness spatially mismatch areas of high taxonomic and functional vulnerability. Nevertheless, there is strong spatial match between taxonomic and functional vulnerabilities suggesting a potential win-win conservation-ecosystem service strategy if more protection is set in these locations. PMID:24985880

  1. Classification accuracy of algorithms for blood chemistry data for three aquaculture-affected marine fish species.

    PubMed

    Coz-Rakovac, R; Topic Popovic, N; Smuc, T; Strunjak-Perovic, I; Jadan, M

    2009-11-01

    The objective of this study was determination and discrimination of biochemical data among three aquaculture-affected marine fish species (sea bass, Dicentrarchus labrax; sea bream, Sparus aurata L., and mullet, Mugil spp.) based on machine-learning methods. The approach relying on machine-learning methods gives more usable classification solutions and provides better insight into the collected data. So far, these new methods have been applied to the problem of discrimination of blood chemistry data with respect to season and feed of a single species. This is the first time these classification algorithms have been used as a framework for rapid differentiation among three fish species. Among the machine-learning methods used, decision trees provided the clearest model, which correctly classified 210 samples or 85.71%, and incorrectly classified 35 samples or 14.29% and clearly identified three investigated species from their biochemical traits.

  2. A new fish species of the subfamily Serraninae (Perciformes, Serranidae) from the Philippines.

    PubMed

    Williams, Jeffrey T; Carpenter, Kent E

    2015-01-19

    A new species of serranine fish is described from the Philippine Islands. A single specimen of a new species, Chelidoperca santosi, captured by fishermen working in Palawan waters was discovered in the public fish market in Iloilo City, Panay, Philippines. Two additional specimens of the new species, also from the Philippines, were subsequently discovered in the collections of the Museum Victoria, Australia. The new species is currently known only from the Philippines and is characterized by its distinctive coloration with a row of four small dark spots on the snout (two in front of each eye) and two dark spots on the chin (one on each side of the symphysis of the dentaries), a white anal fin with six large yellow spots separated by broad white interspaces and a narrow yellow distal border, caudal fin with narrow yellow bars and a yellowish distal margin and no dark spots, and a combination of meristic and morphological characters. 

  3. A new fish species of the subfamily Serraninae (Perciformes, Serranidae) from the Philippines.

    PubMed

    Williams, Jeffrey T; Carpenter, Kent E

    2015-01-01

    A new species of serranine fish is described from the Philippine Islands. A single specimen of a new species, Chelidoperca santosi, captured by fishermen working in Palawan waters was discovered in the public fish market in Iloilo City, Panay, Philippines. Two additional specimens of the new species, also from the Philippines, were subsequently discovered in the collections of the Museum Victoria, Australia. The new species is currently known only from the Philippines and is characterized by its distinctive coloration with a row of four small dark spots on the snout (two in front of each eye) and two dark spots on the chin (one on each side of the symphysis of the dentaries), a white anal fin with six large yellow spots separated by broad white interspaces and a narrow yellow distal border, caudal fin with narrow yellow bars and a yellowish distal margin and no dark spots, and a combination of meristic and morphological characters.  PMID:25661613

  4. Mercury Contamination in an Indicator Fish Species from Andean Amazonian Rivers Affected by Petroleum Extraction.

    PubMed

    Webb, Jena; Coomes, Oliver T; Mainville, Nicolas; Mergler, Donna

    2015-09-01

    Elevated mercury (Hg) concentrations in fish from Amazonia have been associated with gold-mining, hydroelectric dams and deforestation but few studies consider the role of petroleum extraction. Hg levels were determined in fish samples collected in three river basins in Ecuador and Peru with contrasting petroleum exploitation and land-use characteristics. The non-migratory, piscivorous species, Hoplias malabaricus, was used as a bioindicator. The rate of Hg increase with body weight for this species was significantly higher on the Corrientes River, near the site of a recent oil spill, than on the other two rivers. In the absence of substantial deforestation and other anthropogenic sources in the Corrientes River basin, this finding suggests that oil contamination in Andean Amazonia may have a significant impact on Hg levels in fish. PMID:26205230

  5. Mercury Contamination in an Indicator Fish Species from Andean Amazonian Rivers Affected by Petroleum Extraction.

    PubMed

    Webb, Jena; Coomes, Oliver T; Mainville, Nicolas; Mergler, Donna

    2015-09-01

    Elevated mercury (Hg) concentrations in fish from Amazonia have been associated with gold-mining, hydroelectric dams and deforestation but few studies consider the role of petroleum extraction. Hg levels were determined in fish samples collected in three river basins in Ecuador and Peru with contrasting petroleum exploitation and land-use characteristics. The non-migratory, piscivorous species, Hoplias malabaricus, was used as a bioindicator. The rate of Hg increase with body weight for this species was significantly higher on the Corrientes River, near the site of a recent oil spill, than on the other two rivers. In the absence of substantial deforestation and other anthropogenic sources in the Corrientes River basin, this finding suggests that oil contamination in Andean Amazonia may have a significant impact on Hg levels in fish.

  6. Vast assembly of vocal marine mammals from diverse species on fish spawning ground.

    PubMed

    Wang, Delin; Garcia, Heriberto; Huang, Wei; Tran, Duong D; Jain, Ankita D; Yi, Dong Hoon; Gong, Zheng; Jech, J Michael; Godø, Olav Rune; Makris, Nicholas C; Ratilal, Purnima

    2016-03-17

    Observing marine mammal (MM) populations continuously in time and space over the immense ocean areas they inhabit is challenging but essential for gathering an unambiguous record of their distribution, as well as understanding their behaviour and interaction with prey species. Here we use passive ocean acoustic waveguide remote sensing (POAWRS) in an important North Atlantic feeding ground to instantaneously detect, localize and classify MM vocalizations from diverse species over an approximately 100,000 km(2) region. More than eight species of vocal MMs are found to spatially converge on fish spawning areas containing massive densely populated herring shoals at night-time and diffuse herring distributions during daytime. We find the vocal MMs divide the enormous fish prey field into species-specific foraging areas with varying degrees of spatial overlap, maintained for at least two weeks of the herring spawning period. The recorded vocalization rates are diel (24 h)-dependent for all MM species, with some significantly more vocal at night and others more vocal during the day. The four key baleen whale species of the region: fin, humpback, blue and minke have vocalization rate trends that are highly correlated to trends in fish shoaling density and to each other over the diel cycle. These results reveal the temporospatial dynamics of combined multi-species MM foraging activities in the vicinity of an extensive fish prey field that forms a massive ecological hotspot, and would be unattainable with conventional methodologies. Understanding MM behaviour and distributions is essential for management of marine ecosystems and for accessing anthropogenic impacts on these protected marine species. PMID:26934221

  7. Future land use threats to range-restricted fish species in the United States

    DOE PAGES

    Januchowski-Hartley, Stephanie R.; Holtz, Lauren A.; Martinuzzi, Sebastian; McIntyre, Peter B.; Radeloff, Volker C.; Pracheil, Brenda M.

    2016-03-04

    Land use change is one major threat to freshwater biodiversity, and land use change scenarios can help to assess threats from future land use change, thereby guiding proactive conservation decisions. Furthermore, our goal was to identify which range-restricted freshwater fish species are most likely to be affected by land use change and to determine where threats to these species from future land use change in the conterminous United States are most pronounced.

  8. Vast assembly of vocal marine mammals from diverse species on fish spawning ground.

    PubMed

    Wang, Delin; Garcia, Heriberto; Huang, Wei; Tran, Duong D; Jain, Ankita D; Yi, Dong Hoon; Gong, Zheng; Jech, J Michael; Godø, Olav Rune; Makris, Nicholas C; Ratilal, Purnima

    2016-03-17

    Observing marine mammal (MM) populations continuously in time and space over the immense ocean areas they inhabit is challenging but essential for gathering an unambiguous record of their distribution, as well as understanding their behaviour and interaction with prey species. Here we use passive ocean acoustic waveguide remote sensing (POAWRS) in an important North Atlantic feeding ground to instantaneously detect, localize and classify MM vocalizations from diverse species over an approximately 100,000 km(2) region. More than eight species of vocal MMs are found to spatially converge on fish spawning areas containing massive densely populated herring shoals at night-time and diffuse herring distributions during daytime. We find the vocal MMs divide the enormous fish prey field into species-specific foraging areas with varying degrees of spatial overlap, maintained for at least two weeks of the herring spawning period. The recorded vocalization rates are diel (24 h)-dependent for all MM species, with some significantly more vocal at night and others more vocal during the day. The four key baleen whale species of the region: fin, humpback, blue and minke have vocalization rate trends that are highly correlated to trends in fish shoaling density and to each other over the diel cycle. These results reveal the temporospatial dynamics of combined multi-species MM foraging activities in the vicinity of an extensive fish prey field that forms a massive ecological hotspot, and would be unattainable with conventional methodologies. Understanding MM behaviour and distributions is essential for management of marine ecosystems and for accessing anthropogenic impacts on these protected marine species.

  9. Ocean warming, a rapid distributional shift, and the hybridization of a coastal fish species.

    PubMed

    Potts, Warren M; Henriques, Romina; Santos, Carmen V; Munnik, Kate; Ansorge, Isabelle; Dufois, Francois; Booth, Anthony J; Kirchner, Carola; Sauer, Warwick H H; Shaw, Paul W

    2014-09-01

    Despite increasing awareness of large-scale climate-driven distribution shifts in the marine environment, no study has linked rapid ocean warming to a shift in distribution and consequent hybridization of a marine fish species. This study describes rapid warming (0.8 °C per decade) in the coastal waters of the Angola-Benguela Frontal Zone over the last three decades and a concomitant shift by a temperature sensitive coastal fish species (Argyrosomus coronus) southward from Angola into Namibia. In this context, rapid shifts in distribution across Economic Exclusive Zones will complicate the management of fishes, particularly when there is a lack of congruence in the fisheries policy between nations. Evidence for recent hybridization between A. coronus and a congener, A. inodorus, indicate that the rapid shift in distribution of A. coronus has placed adults of the two species in contact during their spawning events. Ocean warming may therefore revert established species isolation mechanisms and alter the evolutionary history of fishes. While the consequences of the hybridization on the production of the resource remain unclear, this will most likely introduce additional layers of complexity to their management.

  10. 77 FR 75611 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-21

    ..., and for a period following, dam removal when natural productivity conditions will be poor. The... levels are high and detrimental to natural-origin fish survival due to dam removal activities. The... intended to protect five species of salmon and steelhead (two of them ESA-listed) during the removal of...

  11. Ecological tracers reveal resource convergence among prey fish species in a large lake ecosystem

    USGS Publications Warehouse

    Paterson, Gord; Rush, Scott A.; Arts, Michael T.; Drouillard, Ken G.; Haffner, G. Doug; Johnson, Tim B.; Lantry, Brian F.; Hebert, Craig E.; McGoldrick, Daryl J.; Backus, Sean M.; Fisk, Aaron T.

    2014-01-01

    5. These results indicate a temporal convergence of the food niche, whereas food partitioning has historically supported the coexistence of prey fish species in Lake Ontario. This convergence is consistent with changes in food-web processes associated with the invasion of dreissenid mussels.

  12. Ocean warming, a rapid distributional shift, and the hybridization of a coastal fish species.

    PubMed

    Potts, Warren M; Henriques, Romina; Santos, Carmen V; Munnik, Kate; Ansorge, Isabelle; Dufois, Francois; Booth, Anthony J; Kirchner, Carola; Sauer, Warwick H H; Shaw, Paul W

    2014-09-01

    Despite increasing awareness of large-scale climate-driven distribution shifts in the marine environment, no study has linked rapid ocean warming to a shift in distribution and consequent hybridization of a marine fish species. This study describes rapid warming (0.8 °C per decade) in the coastal waters of the Angola-Benguela Frontal Zone over the last three decades and a concomitant shift by a temperature sensitive coastal fish species (Argyrosomus coronus) southward from Angola into Namibia. In this context, rapid shifts in distribution across Economic Exclusive Zones will complicate the management of fishes, particularly when there is a lack of congruence in the fisheries policy between nations. Evidence for recent hybridization between A. coronus and a congener, A. inodorus, indicate that the rapid shift in distribution of A. coronus has placed adults of the two species in contact during their spawning events. Ocean warming may therefore revert established species isolation mechanisms and alter the evolutionary history of fishes. While the consequences of the hybridization on the production of the resource remain unclear, this will most likely introduce additional layers of complexity to their management. PMID:24753154

  13. Metal speciation in sediment and their bioaccumulation in fish species of three urban rivers in Bangladesh.

    PubMed

    Islam, Md Saiful; Ahmed, Md Kawser; Raknuzzaman, Mohammad; Habibullah-Al-Mamun, Md; Masunaga, Shigeki

    2015-01-01

    Six trace metals (chromium [Cr], nickel [Ni], copper [Cu], arsenic [As], cadmium [Cd] and lead [Pb]) were measured in sediments and soft tissues of three commonly consumed fish species (Channa punctatus, Heteropneustes fossilis, and Trichogaster fasciata) collected from three urban rivers around Dhaka City, Bangladesh. The abundance of total metals in sediments varied in the decreasing order of Cr > Ni > Pb > Cu > As > Cd. Sequential extraction tests showed that the studied metals were predominantly associated with the residual fraction followed by the organically bound phase. The range of metal concentration in fish species were as follows: Cr (0.75-4.8), Ni (0.14-3.1), Cu (1.1-7.2), As (0.091-0.53), Cd (0.008-0.13), and Pb (0.052-2.7 mg/kg wet weight [ww]). The rank of biota-sediment accumulation factor for fish species were in the descending order of Cu > As > Pb > Ni > Cr > Cd. Metal concentrations in fish exceeded the international permissible standards suggesting that these species are not safe for human consumption.

  14. 77 FR 61562 - Atlantic Highly Migratory Species; 2013 Atlantic Shark Commercial Fishing Season

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-10

    ... accompanied the 2011 shark quota specifications rule (75 FR 76302; December 8, 2010). Thus, NMFS proposes to... Species; 2013 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... season for the Atlantic commercial shark fisheries. Quotas would be adjusted as allowable based on...

  15. 76 FR 27017 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-10

    ... National Oceanic and Atmospheric Administration RIN 0648-XA419 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric.... The study's additional goals are to define what life history strategies are present in these areas...

  16. Habitat associations of fish species of greatest conservation need in wadeable Iowa streams

    USGS Publications Warehouse

    Sindt, Anthony R.; Quist, Michael C.; Pierce, Clay

    2012-01-01

    Fish and habitat data were collected from 84 wadeable stream reaches in the Mississippi River drainage of Iowa to predict the occurrences of seven fish species of greatest conservation need and to identify the relative importance of habitat variables measured at small (e.g., depth, velocity, and substrate) and large (e.g., stream order, elevation, and gradient) scales in terms of their influence on species occurrences. Multiple logistic regression analysis was used to predict fish species occurrences, starting with all possible combinations of variables (5 large-scale variables, 13 small-scale variables, and all 18 variables) but limiting the final models to a maximum of five variables. Akaike's information criterion was used to rank candidate models, weight model parameters, and calculate model-averaged predictions. On average, the correct classification rate (CCR = 80%) and Cohen's kappa (κ = 0.59) were greatest for multiple-scale models (i.e., those including both large-scale and small-scale variables), intermediate for small-scale models (CCR = 75%; κ = 0.49), and lowest for large-scale models (CCR = 73%; κ = 0.44). The occurrence of each species was associated with a unique combination of large-scale and small-scale variables. Our results support the necessity of understanding factors that constrain the distribution of fishes across spatial scales to ensure that management decisions and actions occur at the appropriate scale.

  17. Arsenic Toxicity to Juvenile Fish: Effects of Exposure Route, Arsenic Speciation, and Fish Species

    EPA Science Inventory

    Arsenic toxicity to juvenile rainbow trout and fathead minnows was evaluated in 28-day tests using both dietborne and waterborne exposures, both inorganic and organic arsenic species, and both a live diet and an arsenic-spiked pellet diet. Effects of inorganic arsenic on rainbow...

  18. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

    PubMed Central

    Miya, M.; Sato, Y.; Fukunaga, T.; Sado, T.; Poulsen, J. Y.; Sato, K.; Minamoto, T.; Yamamoto, S.; Yamanaka, H.; Araki, H.; Kondoh, M.; Iwasaki, W.

    2015-01-01

    We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial genome (mitogenome) sequences from 880 species, supplemented by partial mitogenome sequences from 160 elasmobranchs (sharks and rays). The primers target a hypervariable region of the 12S rRNA gene (163–185 bp), which contains sufficient information to identify fishes to taxonomic family, genus and species except for some closely related congeners. To test versatility of the primers across a diverse range of fishes, we sampled eDNA from four tanks in the Okinawa Churaumi Aquarium with known species compositions, prepared dual-indexed libraries and performed paired-end sequencing of the region using high-throughput next-generation sequencing technologies. Out of the 180 marine fish species contained in the four tanks with reference sequences in a custom database, we detected 168 species (93.3%) distributed across 59 families and 123 genera. These fishes are not only taxonomically diverse, ranging from sharks and rays to higher teleosts, but are also greatly varied in their ecology, including both pelagic and benthic species living in shallow coastal to deep waters. We also sampled natural seawaters around coral reefs near the aquarium and detected 93 fish species using this approach. Of the 93 species, 64 were not detected in the four aquarium tanks, rendering the total number of species detected to 232 (from 70 families and 152 genera). The metabarcoding approach presented here is non-invasive, more efficient, more cost-effective and more sensitive than the traditional survey methods. It has the potential to serve as an alternative (or complementary) tool for biodiversity monitoring that revolutionizes natural resource management and ecological studies of fish communities on larger spatial and temporal scales. PMID:26587265

  19. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species.

    PubMed

    Miya, M; Sato, Y; Fukunaga, T; Sado, T; Poulsen, J Y; Sato, K; Minamoto, T; Yamamoto, S; Yamanaka, H; Araki, H; Kondoh, M; Iwasaki, W

    2015-07-01

    We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial genome (mitogenome) sequences from 880 species, supplemented by partial mitogenome sequences from 160 elasmobranchs (sharks and rays). The primers target a hypervariable region of the 12S rRNA gene (163-185 bp), which contains sufficient information to identify fishes to taxonomic family, genus and species except for some closely related congeners. To test versatility of the primers across a diverse range of fishes, we sampled eDNA from four tanks in the Okinawa Churaumi Aquarium with known species compositions, prepared dual-indexed libraries and performed paired-end sequencing of the region using high-throughput next-generation sequencing technologies. Out of the 180 marine fish species contained in the four tanks with reference sequences in a custom database, we detected 168 species (93.3%) distributed across 59 families and 123 genera. These fishes are not only taxonomically diverse, ranging from sharks and rays to higher teleosts, but are also greatly varied in their ecology, including both pelagic and benthic species living in shallow coastal to deep waters. We also sampled natural seawaters around coral reefs near the aquarium and detected 93 fish species using this approach. Of the 93 species, 64 were not detected in the four aquarium tanks, rendering the total number of species detected to 232 (from 70 families and 152 genera). The metabarcoding approach presented here is non-invasive, more efficient, more cost-effective and more sensitive than the traditional survey methods. It has the potential to serve as an alternative (or complementary) tool for biodiversity monitoring that revolutionizes natural resource management and ecological studies of fish communities on larger spatial and temporal scales. PMID:26587265

  20. Introduced species and abiotic factors affect longitudinal variation in small fish assemblages in the Wind River watershed, Wyoming

    USGS Publications Warehouse

    Lionberger, P.S.; Hubert, W.A.

    2007-01-01

    We assessed longitudinal variation in small fish assemblages in the Wind River watershed upstream from Boysen Reservoir, Wyoming and into the reservoir. Twenty-six species were found in the study area, and 12 of the species were believed to have been introduced since settlement by Europeans. Additions and losses of fish species occurred with downstream progression, especially the addition of introduced species. Introduced species increased from 25% of the total number of species in the upper-most river segment (31.5-35.3 km upstream from the reservoir), to 46% in the river segment immediately upstream from the reservoir, to 48% in the reservoir. The most abundant species in the riverine portion of the watershed was the introduced sand shiner (Notropis stramineus). The results suggest that cyprinid species introduced to the upstream watershed and Boysen Reservoir are influencing small fish assemblages upstream from the reservoir and may be impacting native fishes, particularly native cyprinids.

  1. Spatial heterogeneity in fishing creates de facto refugia for endangered Celtic Sea elasmobranchs.

    PubMed

    Shephard, Samuel; Gerritsen, Hans; Kaiser, Michel J; Reid, David G

    2012-01-01

    The life history characteristics of some elasmobranchs make them particularly vulnerable to fishing mortality; about a third of all species are listed by the IUCN as Threatened or Near Threatened. Marine Protected Areas (MPAs) have been suggested as a tool for conservation of elasmobranchs, but they are likely to be effective only if such populations respond to fishing impacts at spatial-scales corresponding to MPA size. Using the example of the Celtic Sea, we modelled elasmobranch biomass (kg h(-1)) in fisheries-independent survey hauls as a function of environmental variables and 'local' (within 20 km radius) fishing effort (h y(-1)) recorded from Vessel Monitoring Systems data. Model selection using AIC suggested strongest support for linear mixed effects models in which the variables (i) fishing effort, (ii) geographic location and (iii) demersal fish assemblage had approximately equal importance in explaining elasmobranch biomass. In the eastern Celtic Sea, sampling sites that occurred in the lowest 10% of the observed fishing effort range recorded 10 species of elasmobranch including the critically endangered Dipturus spp. The most intensely fished 10% of sites had only three elasmobranch species, with two IUCN listed as Least Concern. Our results suggest that stable spatial heterogeneity in fishing effort creates de facto refugia for elasmobranchs in the Celtic Sea. However, changes in the present fisheries management regime could impair the refuge effect by changing fisher's behaviour and displacing effort into these areas.

  2. The importance of the regional species pool, ecological species traits and local habitat conditions for the colonization of restored river reaches by fish.

    PubMed

    Stoll, Stefan; Kail, Jochem; Lorenz, Armin W; Sundermann, Andrea; Haase, Peter

    2014-01-01

    It is commonly assumed that the colonization of restored river reaches by fish depends on the regional species pools; however, quantifications of the relationship between the composition of the regional species pool and restoration outcome are lacking. We analyzed data from 18 German river restoration projects and adjacent river reaches constituting the regional species pools of the restored reaches. We found that the ability of statistical models to describe the fish assemblages established in the restored reaches was greater when these models were based on 'biotic' variables relating to the regional species pool and the ecological traits of species rather than on 'abiotic' variables relating to the hydromorphological habitat structure of the restored habitats and descriptors of the restoration projects. For species presence in restored reaches, 'biotic' variables explained 34% of variability, with the occurrence rate of a species in the regional species pool being the most important variable, while 'abiotic' variables explained only the negligible amount of 2% of variability. For fish density in restored reaches, about twice the amount of variability was explained by 'biotic' (38%) compared to 'abiotic' (21%) variables, with species density in the regional species pool being most important. These results indicate that the colonization of restored river reaches by fish is largely determined by the assemblages in the surrounding species pool. Knowledge of species presence and abundance in the regional species pool can be used to estimate the likelihood of fish species becoming established in restored reaches.

  3. Do human activities influence survival and orientation abilities of larval fishes in the ocean?

    PubMed

    Siebeck, Ulrike E; O'Connor, Jack; Braun, Christoph; Leis, Jeffrey M

    2015-01-01

    The larval stages of most marine fishes spend days to weeks in the pelagic environment, where they must find food and avoid predators in order to survive. Some fish only spend part of their life history in the pelagic environment before returning to their adult habitat, for example, a coral reef. The sensory systems of larval fish develop rapidly during the first few days of their lives, and here we concentrate on the various sensory cues the fish have available to them for survival in the pelagic environment. We focus on the larvae of reef fishes because most is known about them. We also review the major threats caused by human activities that have been identified to have worldwide impact and evaluate how these threats may impact larval-fish survival and orientation abilities. Many human activities negatively affect larval-fish sensory systems or the cues the fish need to detect. Ultimately, this could lead to decreased numbers of larvae surviving to settlement, and, therefore, to decreased abundance of adult fishes. Although we focus on species wherein the larvae and adults occupy different habitats (pelagic and demersal, respectively), it is important to acknowledge that the potential anthropogenic effects we identify may also apply to larvae of species like tuna and herring, where both larvae and adults are pelagic.

  4. Multilevel assessment of fish species traits to evaluate habitat degradation in streams of the upper midwest

    USGS Publications Warehouse

    Goldstein, R.M.; Meador, M.R.

    2005-01-01

    We used species traits to examine the variation in fish assemblages for 21 streams in the Northern Lakes and Forests Ecoregion along a gradient of habitat disturbance. Fish species were classified based on five species trait-classes (trophic ecology, substrate preference, geomorphic preference, locomotion morphology, and reproductive strategy) and 29 categories within those classes. We used a habitat quality index to define a reference stream and then calculated Euclidean distances between the reference and each of the other sites for the five traits. Three levels of species trait analyses were conducted: (1) a composite measure (the sum of Euclidean distances across all five species traits), (2) Euclidean distances for the five individual species trait-classes, and (3) frequencies of occurrence of individual trait categories. The composite Euclidean distance was significantly correlated to the habitat index (r = -0.81; P = 0.001), as were the Euclidean distances for four of the five individual species traits (substrate preference: r = -0.70, P = 0.001; geomorphic preference: r = -0.69, P = 0.001; trophic ecology: r = -0.73, P = 0.001; and reproductive strategy: r = -0.64, P = 0.002). Although Euclidean distances for locomotion morphology were not significantly correlated to habitat index scores (r = -0.21; P = 0.368), analysis of variance and principal components analysis indicated that Euclidean distances for locomotion morphology contributed to significant variation in the fish assemblages among sites. Examination of trait categories indicated that low habitat index scores (degraded streams) were associated with changes in frequency of occurrence within the categories of all five of the species traits. Though the objectives and spatial scale of a study will dictate the level of species trait information required, our results suggest that species traits can provide critical information at multiple levels of data analysis. ?? Copyright by the American Fisheries

  5. Concentration of arsenic in water, sediments and fish species from naturally contaminated rivers.

    PubMed

    Rosso, Juan José; Schenone, Nahuel F; Pérez Carrera, Alejo; Fernández Cirelli, Alicia

    2013-04-01

    Arsenic (As) may occur in surface freshwater ecosystems as a consequence of both natural contamination and anthropogenic activities. In this paper, As concentrations in muscle samples of 10 fish species, sediments and surface water from three naturally contaminated rivers in a central region of Argentina are reported. The study area is one of the largest regions in the world with high As concentrations in groundwater. However, information of As in freshwater ecosystems and associated biota is scarce. An extensive spatial variability of As concentrations in water and sediments of sampled ecosystems was observed. Geochemical indices indicated that sediments ranged from mostly unpolluted to strongly polluted. The concentration of As in sediments averaged 6.58 μg/g ranging from 0.23 to 59.53 μg/g. Arsenic in sediments barely followed (r = 0.361; p = 0.118) the level of contamination of water. All rivers showed high concentrations of As in surface waters, ranging from 55 to 195 μg/L. The average concentration of As in fish was 1.76 μg/g. The level of contamination with As differed significantly between species. Moreover, the level of bioaccumulation of As in fish species related to the concentration of As in water and sediments also differed between species. Whilst some fish species seemed to be able to regulate the uptake of this metalloid, the concentration of As in the large catfish Rhamdia quelen mostly followed the concentration of As in abiotic compartments. The erratic pattern of As concentrations in fish and sediments regardless of the invariable high levels in surface waters suggests the existence of complex biogeochemical processes behind the distribution patterns of As in these naturally contaminated ecosystems.

  6. Comparisons of fish species traits from small streams to large rivers

    USGS Publications Warehouse

    Goldstein, R.M.; Meador, M.R.

    2004-01-01

    To examine the relations between fish community function and stream size, we classified 429 lotic freshwater fish species based on multiple categories within six species traits: (1) substrate preference, (2) geomorphic preference, (3) trophic ecology, (4) locomotion morphology, (5) reproductive strategy, and (6) stream size preference. Stream size categories included small streams, small, medium, and large rivers, and no size preference. The frequencies of each species trait category were determined for each stream size category based on life history information from the literature. Cluster analysis revealed the presence of covarying groups of species trait categories. One cluster (RUN) included the traits of planktivore and herbivore feeding ecology, migratory reproductive behavior and broadcast spawning, preferences for main-channel habitats, and a lack of preferences for substrate type. The frequencies of classifications for the RUN cluster varied significantly across stream size categories (P = 0.009), being greater for large rivers than for small streams and rivers. Another cluster (RIFFLE) included the traits of invertivore feeding ecology, simple nester reproductive behavior, a preference for riffles, and a preference for bedrock, boulder, and cobble-rubble substrate. No significant differences in the frequency of classifications among stream size categories were detected for the RIFFLE cluster (P = 0.328). Our results suggest that fish community function is structured by large-scale differences in habitat and is different for large rivers than for small streams and rivers. Our findings support theoretical predictions of variation in species traits among stream reaches based on ecological frameworks such as landscape filters, habitat templates, and the river continuum concept. We believe that the species trait classifications presented here provide an opportunity for further examination of fish species' relations to physical, chemical, and biological factors

  7. Pollution Problem in River Kabul: Accumulation Estimates of Heavy Metals in Native Fish Species

    PubMed Central

    Ahmad, Habib; Yousafzai, Ali Muhammad; Siraj, Muhammad; Ahmad, Rashid; Ahmad, Israr; Nadeem, Muhammad Shahid; Ahmad, Waqar; Akbar, Nazia; Muhammad, Khushi

    2015-01-01

    The contamination of aquatic systems with heavy metals is affecting the fish population and hence results in a decline of productivity rate. River Kabul is a transcountry river originating at Paghman province in Afghanistan and inters in Khyber Pakhtunkhwa province of Pakistan and it is the major source of irrigation and more than 54 fish species have been reported in the river. Present study aimed at the estimation of heavy metals load in the fish living in River Kabul. Heavy metals including chromium, nickel, copper, zinc, cadmium, and lead were determined through atomic absorption spectrophotometer after tissue digestion by adopting standard procedures. Concentrations of these metals were recorded in muscles and liver of five native fish species, namely, Wallago attu, Aorichthys seenghala, Cyprinus carpio, Labeo dyocheilus, and Ompok bimaculatus. The concentrations of chromium, nickel, copper, zinc, and lead were higher in both of the tissues, whereas the concentration of cadmium was comparatively low. However, the concentration of metals was exceeding the RDA (Recommended Dietary Allowance of USA) limits. Hence, continuous fish consumption may create health problems for the consumers. The results of the present study are alarming and suggest implementing environmental laws and initiation of a biomonitoring program of the river. PMID:26339622

  8. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (South Atlantic): Bluefish

    SciTech Connect

    Oliver, J.D.; Van Den Avyle, M.J.; Bozeman, E.L. Jr.

    1989-04-01

    Species profiles are literature summaries of the life history, distribution, and environmental requirements of coastal fishes and invertebrates. Profiles are prepared to assist with environmental impact assessment. The bluefish (Pomatomus saltatrix) is a valuable recreational and commercial fish on the Atlantic coast. In the South Atlantic Region the recreational catch exceeds the commercial catch. The bluefish is a migratory pelagic fish that generally travels northward in spring and summer and southward in fall and winter along the Atlantic seaboard. In the South Atlantic Region, spawning occurs primarily during spring waters just shoreward of the Gulf Stream form southern North Carolina to Florida. Most larvae are carried northward by the Gulf Stream and are dispersed over the continental slope of the Middle Atlantic Region. Adult bluefish inhabit nearshore areas in the South Atlantic Region during their southerly migration in fall and winter. Larval bluefish eat mostly copepods, cladocerans, and invertebrate eggs; juveniles eat larger invertebrates and fishes. Adult bluefish eat fishes and seem to prefer schooling coastal species. Bluefish have been reported to avoid areas of low dissolved oxygen. Water turbidity may affect feeding because bluefish rely on vision to locate prey. Environmental disturbances which affect the dissolved oxygen concentration or turbidity of estuarine and nearshore waters may, therefore, affect bluefish distribution and feeding. 40 refs., 4 figs., 2 tabs.

  9. Marine protected areas facilitate parasite populations among four fished host species of central Chile.

    PubMed

    Wood, Chelsea L; Micheli, Fiorenza; Fernández, Miriam; Gelcich, Stefan; Castilla, Juan Carlos; Carvajal, Juan

    2013-11-01

    1. Parasites comprise a substantial proportion of global biodiversity and exert important ecological influences on hosts, communities and ecosystems, but our knowledge of how parasite populations respond to human impacts is in its infancy. 2. Here, we present the results of a natural experiment in which we used a system of highly successful marine protected areas and matched open-access areas in central Chile to assess the influence of fishing-driven biodiversity loss on parasites of exploited fish and invertebrate hosts. We measured the burden of gill parasites for two reef fishes (Cheilodactylus variegatus and Aplodactylus punctatus), trematode parasites for a keyhole limpet (Fissurella latimarginata), and pinnotherid pea crab parasites for a sea urchin (Loxechinus albus). We also measured host density for all four hosts. 3. We found that nearly all parasite species exhibited substantially greater density (# parasites m(-2)) in protected than in open-access areas, but only one parasite species (a gill monogenean of C. variegatus) was more abundant within hosts collected from protected relative to open-access areas. 4. These data indicate that fishing can drive declines in parasite abundance at the parasite population level by reducing the availability of habitat and resources for parasites, but less commonly affects the abundance of parasites at the infrapopulation level (within individual hosts). 5. Considering the substantial ecological role that many parasites play in marine communities, fishing and other human impacts could exert cryptic but important effects on marine community structure and ecosystem functioning via reductions in parasite abundance.

  10. 50 CFR 222.309 - Permits for listed species of sea turtles involving the Fish and Wildlife Service.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... International Trade in Endangered Species of Wild Fauna and Flora (CITES) (TIAS 8249, July 1, 1975) (50 CFR part... involving the Fish and Wildlife Service. 222.309 Section 222.309 Wildlife and Fisheries NATIONAL MARINE... species of sea turtles involving the Fish and Wildlife Service. (a) This section establishes...

  11. Nutritional Evaluation of Commercially Important Fish Species of Lakshadweep Archipelago, India

    PubMed Central

    Dhaneesh, Kottila Veettil; Noushad, Kunnamgalam Mohammed; Ajith Kumar, Thipramalai Thankappan

    2012-01-01

    Estimation of nutrition profile of edible fishes is essential and thus a bio-monitoring study was carried out to find out the nutritional composition of commonly available fishes in Agatti Island water of Lakshadweep Sea. Protein, carbohydrate, lipid, ash, vitamin, amino acid and fatty acid composition in the muscle of ten edible fish species were studied. Proximate analysis revealed that the protein, carbohydrate, lipid and ash contents were high in Thunnus albacares (13.69%), Parupeneus bifasciatus (6.12%), Hyporhamphus dussumieri (6.97%) and T. albacares (1.65%), respectively. Major amino acids were lysine, leucine and methionine, registering 2.84–4.56%, 2.67–4.18% and 2.64–3.91%, respectively. Fatty acid compositions ranged from 31.63% to 38.97% saturated (SFA), 21.99–26.30% monounsaturated (MUFAs), 30.32–35.11% polyunsaturated acids (PUFAs) and 2.86–7.79% branched fatty acids of the total fatty acids. The ω-3 and ω-6 PUFAs were ranged 13.05–21.14% and 6.88–9.82% of the total fatty acids, respectively. Hence, the fishes of Lakshadweep Sea are highly recommended for consumption, since these fishes are highly enriched with nutrition. The results can be used as a baseline data for comparing the various nutritional profiles of fishes in future. PMID:23029011

  12. Nutritional evaluation of commercially important fish species of Lakshadweep archipelago, India.

    PubMed

    Dhaneesh, Kottila Veettil; Noushad, Kunnamgalam Mohammed; Kumar, Thipramalai Thankappan Ajith

    2012-01-01

    Estimation of nutrition profile of edible fishes is essential and thus a bio-monitoring study was carried out to find out the nutritional composition of commonly available fishes in Agatti Island water of Lakshadweep Sea. Protein, carbohydrate, lipid, ash, vitamin, amino acid and fatty acid composition in the muscle of ten edible fish species were studied. Proximate analysis revealed that the protein, carbohydrate, lipid and ash contents were high in Thunnus albacares (13.69%), Parupeneus bifasciatus (6.12%), Hyporhamphus dussumieri (6.97%) and T. albacares (1.65%), respectively. Major amino acids were lysine, leucine and methionine, registering 2.84-4.56%, 2.67-4.18% and 2.64-3.91%, respectively. Fatty acid compositions ranged from 31.63% to 38.97% saturated (SFA), 21.99-26.30% monounsaturated (MUFAs), 30.32-35.11% polyunsaturated acids (PUFAs) and 2.86-7.79% branched fatty acids of the total fatty acids. The ω-3 and ω-6 PUFAs were ranged 13.05-21.14% and 6.88-9.82% of the total fatty acids, respectively. Hence, the fishes of Lakshadweep Sea are highly recommended for consumption, since these fishes are highly enriched with nutrition. The results can be used as a baseline data for comparing the various nutritional profiles of fishes in future. PMID:23029011

  13. Do wild fish species contribute to the transmission of koi herpesvirus to carp in hatchery ponds?

    PubMed

    Fabian, M; Baumer, A; Steinhagen, D

    2013-05-01

    The koi herpesvirus (KHV) has spread worldwide since its discovery in 1998 and causes disease and mortality in koi and common carp populations with a high impact on the carp production industry. Many investigations have been conducted to examine ways of distribution and to identify possible transmission vectors. The answers, however, raise many new questions. In the present study, different wild fish species taken from carp ponds with a history of KHV infection were examined for their susceptibility to the virus. In the tissue of these fish, the virus load was determined and it was tested whether a release of the virus could be induced by stress and the virus then could be transferred to naive carp. Wild fish were gathered from carp ponds during acute outbreaks of virus-induced mortality in summer and from ponds stocked with carp carrying a latent KHV infection. From these ponds, wild fish were collected during the harvesting process in autumn or spring when the ponds were drained. We found that regardless of season, temperature variation, age and infection status of the carp stock, wild fish from carp ponds and its outlets could be tested positive for the KHV genome using real-time PCR with a low prevalence and virus load. Furthermore, virus transfer to naive carp was observed after a period of cohabitation. Cyprinid and non-cyprinid wild fish can therefore be considered as an epidemiological risk for pond carp farms.

  14. Effects of bottom trawling on fish foraging and feeding

    PubMed Central

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-01

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  15. Four new records of fish species (Cypriniformes: Nemacheilidae, Balitoridae; Characiformes: Prochilodontidae) and corrections of two misidentified fish species (Tetraodontiformes: Tetraodontidae; Beloniformes: Belonidae) in Yunnan, China

    PubMed Central

    Endruweit, Marco

    2014-01-01

    In this study, six fish species of five families are reported for the first time from Yunnan Province, China. The nemacheilid Schistura amplizona Kottelat, 2000 is reported from the Luosuojiang River and Nanlahe River subbasins, Mekong basin; the prochilodontid Prochilodus lineatus (Valenciennes, 1837), the balitorid Vanmanenia serrilineata Kottelat, 2000, and the tetraodontid Monotrete turgidus Kottelat, 2000, from Nanlahe River subbasin, Mekong basin; the balitorid Beaufortia daon (Mai, 1978), and the belonid Xenentodon canciloides (Bleeker, 1854), both, from Black River subbasin, Red River basin. The freshwater puffer M. turgidus and the needlefish X. canciloides have been previously misidentified as Tetraodon leiurus (Bleeker, 1950) and Tylosurus strongylurus (van Hasselt, 1823), respectively. PMID:24470454

  16. Tumor suppressor gene P53 in fish species as a target for genotoxic effects monitoring

    SciTech Connect

    Kusser, W.C.; Brand, D.; Glickman, B.W.; Cretney, W.

    1995-12-31

    Analysis of environmentally induced molecular changes in DNA from fish was initiated with a study of tumor suppressor gene p53. This gene was chosen because of the high number of documented mutations in p53 from humans and their relevance in tumorigenesis. Bottom-feeding flatfish (e.g. English sole, Pleuronectes vetulus) and members of the salmonid family (e.g. rainbow trout, Oncorhynchus mykiss and chinook salmon, O. tschaaytsha) were chosen, because they are widespread and of commercial and recreational importance. The studies include the use of histopathological, biochemical, and molecular genetic tools in aquatic systems. The authors are currently examining the deposition of DNA damage and mutation in the p53 gene in fish. Parallel histopathology of liver showed idiopathic liver lesions that were strongly dependent on location of capture (0.01 < p(X{sup 2} 0.05, 2 > 6.89) < 0.025) with a prevalence of 30% for fish collected from the vicinity of pulp mills. To assess DNA damage and mutation analysis, DNA was extracted from fish liver. Polymerase chain reaction (PCR) and DNA sequencing of the p53 gene was performed for rainbow trout, chinook and sockeye salmon, O. nerka. Southern blotting with a labeled p53 probe from rainbow trout was performed using genomic DNA from various teleost fish species. The presence of p53 could be shown in all fish species examined, including salmonids and sentinel species for environmental monitoring like English sole and white sucker (Catostomus commersom). To correlate histopathology with molecular analysis the authors initiated the determination of DNA damage, DNA adducts and mutations in the p53 gene (conserved exons 5 to 9).

  17. Assessing Historical Fish Community Composition Using Surveys, Historical Collection Data, and Species Distribution Models

    PubMed Central

    Labay, Ben; Cohen, Adam E.; Sissel, Blake; Hendrickson, Dean A.; Martin, F. Douglas; Sarkar, Sahotra

    2011-01-01

    Accurate establishment of baseline conditions is critical to successful management and habitat restoration. We demonstrate the ability to robustly estimate historical fish community composition and assess the current status of the urbanized Barton Creek watershed in central Texas, U.S.A. Fish species were surveyed in 2008 and the resulting data compared to three sources of fish occurrence information: (i) historical records from a museum specimen database and literature searches; (ii) a nearly identical survey conducted 15 years earlier; and (iii) a modeled historical community constructed with species distribution models (SDMs). This holistic approach, and especially the application of SDMs, allowed us to discover that the fish community in Barton Creek was more diverse than the historical data and survey methods alone indicated. Sixteen native species with high modeled probability of occurrence within the watershed were not found in the 2008 survey, seven of these were not found in either survey or in any of the historical collection records. Our approach allowed us to more rigorously establish the true baseline for the pre-development fish fauna and then to more accurately assess trends and develop hypotheses regarding factors driving current fish community composition to better inform management decisions and future restoration efforts. Smaller, urbanized freshwater systems, like Barton Creek, typically have a relatively poor historical biodiversity inventory coupled with long histories of alteration, and thus there is a propensity for land managers and researchers to apply inaccurate baseline standards. Our methods provide a way around that limitation by using SDMs derived from larger and richer biodiversity databases of a broader geographic scope. Broadly applied, we propose that this technique has potential to overcome limitations of popular bioassessment metrics (e.g., IBI) to become a versatile and robust management tool for determining status of

  18. Species assemblages of pelagic fish embryos in the southern North Sea between 1984 and 2000

    NASA Astrophysics Data System (ADS)

    von Westernhagen, Hein; Dethlefsen, Volkert; Bade, Tim; Wosniok, Werner

    2002-02-01

    The occurrence and abundance of the pelagic eggs of southern North Sea spring-spawning fish were analysed between 1984 and 2000. Species number varied between six (1986) and 14 (1999) and was positively correlated with sea surface temperature. With one exception, dab eggs were always the most abundant and usually highly dominant. Ranking of species depended on temperature, but no significant differences in ranking between years was discernible. Although with the increase in temperature in the 1990s a change in species assemblage was evident [species belonging to the boreal-Mediterranean (Lusitanian) group became more apparent in the species assemblage] this did not lead to an increased species diversity (Shannon Index) or a change in other community parameters. It appears that the recent developments regarding spawning stock biomass of commercial North Sea fish is reflected in the declining egg abundance of the respective commercial and larger species (i.e. cod, flounder, plaice) and an increase in abundance of the eggs of small species (i.e. long rough dab, rockling) over the years.

  19. Differential Hepatic Metal and Metallothionein Levels in Three Feral Fish Species along a Metal Pollution Gradient

    PubMed Central

    Bervoets, Lieven; Knapen, Dries; De Jonge, Maarten; Van Campenhout, Karen; Blust, Ronny

    2013-01-01

    The accumulation of cadmium, copper and zinc and the induction of metallothioneins (MT) in liver of three freshwater fish species was studied. Gudgeon (Gobio gobio), roach (Rutilus rutilus) and perch (Perca fluviatilis) were captured at 6 sampling sites along a cadmium and zinc gradient and one reference site in a tributary of the Scheldt River in Flanders (Belgium). At each site up to 10 individuals per species were collected and analyzed on their general condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI). From each individual fish the liver was dissected and analyzed on Cd, Cu and Zn and MT-content. Although not all species were present at each site, hepatic Cd and Zn levels generally followed the pollution gradient and highest levels were measured in perch, followed by roach and gudgeon. Nevertheless also an effect of site was observed on this order. MT-levels appeared to be the highest in gudgeon although differences with the other species were not very pronounced and depended on the site. Significant relationships were found between hepatic zinc accumulation and MT levels. For each species the ratio MTtheoretical/ MTmeasured was calculated, which gives an indication of the relative capacity to induce MTs and thus immobilize the metals. Perch had the lowest capacity in inducing MTs (highest ratio). Relationships between hepatic metal levels and fish condition indices were absent or very weak. PMID:23556004

  20. Electrocommunication behaviour during social interactions in two species of pulse-type weakly electric fishes (Mormyridae).

    PubMed

    Gebhardt, K; Böhme, M; von der Emde, G

    2012-12-01

    This study compares electrocommunication behaviour in groups of freely swimming weakly electric fishes of two species, Marcusenius altisambesi and Mormyrus rume. Animals emitted variable temporal sequences of stereotyped electric organ discharges (EOD) that served as communication signals. While the waveform of individual signals remained constant, the inter-discharge interval (IDI) patterns conveyed situation-specific information. Both species showed different types of group behaviour, e.g. they engaged in collective (group) foraging. The results show that in each species, during different behavioural conditions (resting, foraging and agonistic encounters), certain situation-specific IDI patterns occurred. In both species, neighbouring fishes swimming closely together interacted electrically by going in and out of synchronization episodes, i.e. periods of temporally correlated EOD production. These often resulted in echo responses between neighbours. During group foraging, fishes often signalled in a repetitive fixed order (fixed-order signalling). During foraging, EOD emission rates of M. altisambesi were higher and more regular than those of M. rume. The two species also differed in the quantity of group behaviours with M. altisambesi being more social than M. rume, which was reflected in the lack of specific agonistic IDI patterns, more fixed-order signalling and more communal resting behaviour in M. altisambesi.

  1. Population and biological parameters of selected fish species from the middle Xingu River, Amazon Basin.

    PubMed

    Camargo, M; Giarrizzo, T; Isaac, V J

    2015-08-01

    This study estimates the main biological parameters, including growth rates, asymptotic length, mortality, consumption by biomass, biological yield, and biomass, for the most abundant fish species found on the middle Xingu River, prior to the construction of the Belo Monte Dam. The specimens collected in experimental catches were analysed with empirical equations and length-based FISAT methods. For the 63 fish species studied, high growth rates (K) and high natural mortality (M) were related to early sexual maturation and low longevity. The predominance of species with short life cycles and a reduced number of age classes, determines high rates of stock turnover, which indicates high productivity for fisheries, and a low risk of overfishing. PMID:26691084

  2. Population and biological parameters of selected fish species from the middle Xingu River, Amazon Basin.

    PubMed

    Camargo, M; Giarrizzo, T; Isaac, V J

    2015-08-01

    This study estimates the main biological parameters, including growth rates, asymptotic length, mortality, consumption by biomass, biological yield, and biomass, for the most abundant fish species found on the middle Xingu River, prior to the construction of the Belo Monte Dam. The specimens collected in experimental catches were analysed with empirical equations and length-based FISAT methods. For the 63 fish species studied, high growth rates (K) and high natural mortality (M) were related to early sexual maturation and low longevity. The predominance of species with short life cycles and a reduced number of age classes, determines high rates of stock turnover, which indicates high productivity for fisheries, and a low risk of overfishing.

  3. Feeding habits and habitats preferences affecting mercury bioaccumulation in 37 subtropical fish species from Wujiang River, China.

    PubMed

    Li, Sixin; Zhou, Lianfeng; Wang, Hongjun; Liang, Youguang; Chang, Jianbo; Xiong, Meihua; Zhang, Yichao; Hu, Juxiang

    2009-02-01

    The present study is the first to report the total mercury concentration of 37 fish species collected from Wujiang River, which is the largest branch on the southern bank of Yangtze River, China and proposed for hydropower development. Total mercury concentrations varied among the 37 subtropical species examined. We found higher mercury concentrations in carnivorous species demonstrating greater mercury bioaccumulation in species with more predatory feeding habits. There is no significant difference between fish grouped by habitat preference and feeding habit. However, carnivorous species preferring benthic positions had higher total mercury concentrations than others suggesting that mercury accumulation is related to the interaction of feeding habit and habitat preference. In our study, fish that are bottom living and feed on other fish or aquatic animals are more likely at high risk of mercury exposure. Additional mercury contamination and future impoundment may raise mercury concentration in fish in the Wujiang causing concern for human health and ecological impacts.

  4. Cadmium and lead in selected tissues of two commercially important fish species from the Adriatic Sea.

    PubMed

    Gaspić, Z Kljaković; Zvonarić, T; Vrgoc, N; Odzak, N; Barić, A

    2002-12-01

    Baseline levels of cadmium and lead were determined in muscle tissue and liver of hake (Merluccius merluccius) and red mullet (Mullus barbatus), two commercially important fish species from the eastern Adriatic. Concentrations of trace metals in liver (Cd: 6-183 microg kg(-1) w. wt. ; Pb: 39-970 microg kg(-1) w. wt.) were within the range of recently published data for the Mediterranean. In the muscle tissue, cadmium concentrations (4.1-29 microg kg(-1) w. wt.) were among the lowest reported values for the Mediterranean, whereas lead levels (49-158 microg kg(-1) w. wt.) were within the range of values reported for various coastal areas of the Mediterranean. Presented data on cadmium and lead content in the studied fish species provide no proof of the general pollution of the Adriatic. Obtained data were tested in relation to fish length. Metal concentrations in liver decreased with the increase in fish size, whereas no significant correlation was found between trace metal levels in the muscle tissue and the length of both species. Relationships between metal concentrations and sex were also tested, but they gave no significant results. A comparison of contaminant concentrations in the edible tissue of hake and red mullet with the Croatian legislation shows that the consumption of their meat is not harmful for humans, not even for the most endangered population from the coastal region.

  5. Isolation and characterisation of flavobacteria from wild and cultured freshwater fish species in Hungary.

    PubMed

    Varga, Zsuzsanna; Sellyei, Boglárka; Paulus, Petra; Papp, Melitta; Molnár, Kálmán; Székely, Csaba

    2016-03-01

    The objective of this study was to survey the incidence of Flavobacterium columnare in wild and cultured freshwater fish species in Hungary. This bacterium usually causes disease in waters of more than 25 °C temperature. However, with the introduction of intensive fish farming systems, infected fish exposed to stress develop disease signs also at lower temperatures; in addition, the temperature of natural waters rises to the critical level due to global warming. Twenty-five isolates from wild and cultured freshwater fishes were identified as F. columnare by specific PCR, although both the fragment lengths and the results of PCRRFLP genotyping with BsuRI (HaeIII) and RsaI restriction enzymes raised doubts regarding this species classification. Sequencing of the 16S ribosomal RNA gene revealed that 23 isolates belonged to the species F. johnsoniae and two represented Chryseobacterium spp. The isolates were found to have high-level multidrug resistance: all were resistant to ampicillin and polymyxin B, the 23 F. johnsoniae strains to cotrimoxazole, 88% of them to gentamicin, and 72% to chloramphenicol. The majority of the 25 isolates were sensitive to erythromycin (88%), furazolidone (76%), and florfenicol (68%).

  6. Isolation and characterisation of flavobacteria from wild and cultured freshwater fish species in Hungary.

    PubMed

    Varga, Zsuzsanna; Sellyei, Boglárka; Paulus, Petra; Papp, Melitta; Molnár, Kálmán; Székely, Csaba

    2016-03-01

    The objective of this study was to survey the incidence of Flavobacterium columnare in wild and cultured freshwater fish species in Hungary. This bacterium usually causes disease in waters of more than 25 °C temperature. However, with the introduction of intensive fish farming systems, infected fish exposed to stress develop disease signs also at lower temperatures; in addition, the temperature of natural waters rises to the critical level due to global warming. Twenty-five isolates from wild and cultured freshwater fishes were identified as F. columnare by specific PCR, although both the fragment lengths and the results of PCRRFLP genotyping with BsuRI (HaeIII) and RsaI restriction enzymes raised doubts regarding this species classification. Sequencing of the 16S ribosomal RNA gene revealed that 23 isolates belonged to the species F. johnsoniae and two represented Chryseobacterium spp. The isolates were found to have high-level multidrug resistance: all were resistant to ampicillin and polymyxin B, the 23 F. johnsoniae strains to cotrimoxazole, 88% of them to gentamicin, and 72% to chloramphenicol. The majority of the 25 isolates were sensitive to erythromycin (88%), furazolidone (76%), and florfenicol (68%). PMID:26919138

  7. Assessment of trace metals in fish species of urban rivers in Bangladesh and health implications.

    PubMed

    Islam, Md Saiful; Ahmed, Md Kawser; Habibullah-Al-Mamun, Md; Masunaga, Shigeki

    2015-01-01

    Levels of six metals i.e. chromium (Cr), nickel (Ni), copper (Cu), arsenic (As), cadmium (Cd) and lead (Pb) in three fish species (Channa punctatus, Heteropneustes fossilis and Trichogaster fasciata) from three urban rivers in Bangladesh were measured. Concentrations of Cr, Ni, Cu, As, Cd and Pb in fish species were 0.75-4.8, 0.14-3.1, 1.1-7.2, 0.091-0.53, 0.007-0.13, and 0.052-2.7mg/kg ww, respectively. The analyzed metals were significantly different between species and seasons (p<0.05). The target hazard quotients (THQs) and carcinogenic risk (CR) for individual metal showed that As and Pb in muscle was particularly hazardous and potential risk for the low, medium and high fish consumer in Bangladesh. Some of the trace metals' concentrations are higher than the recommended value, which suggest that the water and fish of these rivers are not completely safe for human health.

  8. Biomarker sensitivity for polynuclear and halogenated aromatic hydrocarbon contamination in fish species from Galveston Bay

    SciTech Connect

    Willett, K.; McDonald, S.; Steinberg, M.; Beatty, K.; Safe, S.

    1995-12-31

    The Galveston Bay estuary exhibits a contamination gradient for polynuclear aromatic hydrocarbons (PAHs) and halogenated aromatic hydrocarbons, which is useful for comparing biomarker response sensitivity in fish taken from different bay locations. Two fish species, hardhead catfish (Arius felis) and Atlantic croaker (Micropogon undulatus), were collected from four stations where sediment total PAHs ranged from 68 to > 1,000 ng/g. Hardhead catfish showed no consistent CYP1A mediated responses (hepatic ethoxyresorufin-O-deethylase activity (EROD), CYP1A mRNA levels, or CYP1A immunoreactive protein) in the field collected fish or in fish dosed with up to 15 mg/kg benzo(a)pyrene (BaP). Significant differences were seen in field collected hardhead catfish in biliary concentrations of naphthalene, phenanthrene, and BaP metabolites. Conversely, in croakers taken from the same four Galveston Bay locations, there were significant elevations IN EROD and glutathione-S-transferase activities, CYP1A immunoreactive protein, and biliary PAH metabolites at the contaminated stations. These studies suggest that croaker is a good monitoring species especially with respect to induction of CYP1A mediated responses by PAHs. Biliary PAH metabolites and PAH-DNA adducts were sensitive to PAH contamination in both species.

  9. Liquid chromatographic determination of florfenicol in the plasma of multiple species of fish

    USGS Publications Warehouse

    Vue, C.; Schmidt, L.J.; Stehly, G.R.; Gingerich, W.H.

    2002-01-01

    A simple method was developed for determining florfenicol concentration in a small volume (250 mul) of plasma from five phylogenetically diverse species of freshwater fish. Florfenicol was isolated from the plasma matrix through C-18 solid-phase extraction and quantified by reversed-phase high-performance liquid chromatography with UV detection. The accuracy (84-104%), precision (%RSDless than or equal to8), and sensitivity (quantitation limit <30 ng/ml) of the method indicate its usefulness for conducting pharmacokinetic studies on a variety of freshwater fish. Published by Elsevier Science B.V.

  10. Bioaccumulation of trace mercury in trophic levels of benthic, benthopelagic, pelagic fish species, and sea birds from Arvand River, Iran.

    PubMed

    Hosseini, Mehdi; Nabavi, Seyed Mohammad Bagher; Parsa, Yaghob

    2013-12-01

    In this study, concentration of mercury was determined in the trophic levels of benthic, benthopelagic, pelagic fish species, and river birds from Arvand River, located in the Khuzestan province in the lowlands of southwestern Iran at the head of the Persian Gulf. The order of mercury concentrations in tissues of the fish species was as follows: liver>gill>muscle and in tissues of the kingfisher species was as follows: feather>liver>kidney>muscle. Therefore, liver in fish and feather in kingfisher exhibited higher mercury concentration than the other tissues. There was a positive correlation between mercury concentrations in fish and kingfisher species with size of its food items. We expected to see higher mercury levels in tissues of female species because they are larger and can eat larger food items. The results of this study show that the highest mean mercury level were found in the kingfisher (Anas crecca), followed by benthic (Epinephelus diacanthus), benthopelagic (Chanos chanos), and pelagic fish (Strongylura strongylura). Mean value of mercury in fish species, S. strongylura were (0.61 μg g(-1) dry weight), C. chanos (0.45 μg g(-1) dry weight), E. diacanthus (0.87 μg g(-1) dry weight), and in kingfisher species A. crecca was (2.64 μg g(-1) dry weight). Significant correlation between mercury concentration in fish and kingfisher may be related to high variability of mercury in the fish.

  11. Evaluation of trace metal levels in tissues of two commercial fish species in Kapar and Mersing coastal waters, Peninsular Malaysia.

    PubMed

    Bashir, Fathi Alhashmi; Shuhaimi-Othman, Mohammad; Mazlan, A G

    2012-01-01

    This study is focused on evaluating the trace metal levels in water and tissues of two commercial fish species Arius thalassinus and Pennahia anea that were collected from Kapar and Mersing coastal waters. The concentrations of Fe, Zn, Al, As, Cd and Pb in these coastal waters and muscle, liver and gills tissues of the fishes were quantified. The relationship among the metal concentrations and the height and weight of the two species were also examined. Generally, the iron has the highest concentrations in both water and the fish species. However, Cd in both coastal waters showed high levels exceeding the international standards. The metal level concentration in the sample fishes are in the descending order livers > gills > muscles. A positive association between the trace metal concentrations and weight and length of the sample fishes was investigated. Fortunately the level of these metal concentrations in fish has not exceeded the permitted level of Malaysian and international standards. PMID:22046193

  12. Evaluation of Trace Metal Levels in Tissues of Two Commercial Fish Species in Kapar and Mersing Coastal Waters, Peninsular Malaysia

    PubMed Central

    Bashir, Fathi Alhashmi; Shuhaimi-Othman, Mohammad; Mazlan, A. G.

    2012-01-01

    This study is focused on evaluating the trace metal levels in water and tissues of two commercial fish species Arius thalassinus and Pennahia anea that were collected from Kapar and Mersing coastal waters. The concentrations of Fe, Zn, Al, As, Cd and Pb in these coastal waters and muscle, liver and gills tissues of the fishes were quantified. The relationship among the metal concentrations and the height and weight of the two species were also examined. Generally, the iron has the highest concentrations in both water and the fish species. However, Cd in both coastal waters showed high levels exceeding the international standards. The metal level concentration in the sample fishes are in the descending order livers > gills > muscles. A positive association between the trace metal concentrations and weight and length of the sample fishes was investigated. Fortunately the level of these metal concentrations in fish has not exceeded the permitted level of Malaysian and international standards. PMID:22046193

  13. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Southwest)

    SciTech Connect

    Rackowski, J.P.; Pikitch, E.K. . Dept. of Fisheries and Wildlife; Washington Univ., Seattle, WA . Fisheries Research Inst.)

    1989-08-01

    Species profiles are literature summaries of taxonomy, morphology, range, growth characteristics, ecology, life history, and commercial importance of coastal species. Pacific sanddab, Citharichthys sordidus, and speckled sanddab, Citharichthys stigmaeus, are common along the California coast from the intertidal zone to depths of 306 m. Pacific sanddabs spawn from July to September and speckled sanddabs, from April to September. Eggs and larvae are common throughout the range of the species. Average life span is 8--10 years in Pacific sanddabs and 3--4 years in speckled sanddabs. Females of both species live longer than males. Female Pacific sanddabs attain sexual maturity at age 3 and female speckled sanddabs, at age 2. Postlarvae feed on zooplankton; adults eat a variety of crustaceans and fish. Both species prefer sandy bottoms. The speckled sanddab was the most abundant species caught in trawl surveys off southern California. Commercial catch statistics lump both species under sanddabs''. Average annual landings, 1930--70, were 500,000 pounds and from 1971--86, landings rose to 900,000 pounds. Commercial fish buyers paid $0.37 per pound for sanddabs in April, 1987. 48 refs., 9 figs.

  14. Integrative taxonomy detects cryptic and overlooked fish species in a neotropical river basin.

    PubMed

    Gomes, Laís Carvalho; Pessali, Tiago Casarim; Sales, Naiara Guimarães; Pompeu, Paulo Santos; Carvalho, Daniel Cardoso

    2015-10-01

    The great freshwater fish diversity found in the neotropical region makes management and conservation actions challenging. Due to shortage of taxonomists and insufficient infrastructure to deal with such great biodiversity (i.e. taxonomic impediment), proposed remedies to accelerate species identification and descriptions include techniques that combine DNA-based identification and concise morphological description. The building of a DNA barcode reference database correlating meristic and genetic data was developed for 75 % of the Mucuri River basin's freshwater fish. We obtained a total of 141 DNA barcode sequences from 37 species belonging to 30 genera, 19 families, and 5 orders. Genetic distances within species, genera, and families were 0.74, 9.5, and 18.86 %, respectively. All species could be clearly identified by the DNA barcodes. Divergences between meristic morphological characteristics and DNA barcodes revealed two cryptic species among the Cyphocharax gilbert and Astyanax gr. bimaculatus specimens, and helped to identify two overlooked species within the Gymnotus and Astyanax taxa. Therefore, using a simplified model of neotropical biodiversity, we tested the efficiency of an integrative taxonomy approach for species discovery, identification of cryptic diversity, and accelerating biodiversity descriptions.

  15. Small Fish Species as Powerful Model Systems to Study Vertebrate Physiology in Space

    NASA Astrophysics Data System (ADS)

    Muller, M.; Aceto, J.; Dalcq, J.; Alestrom, P.; Nourizadeh-Lillabadi, R.; Goerlich, R.; Schiller, V.; Winkler, C.; Renn, J.; Eberius, M.; Slenzka, K.

    2008-06-01

    Small fish models, mainly zebrafish (Danio rerio) and medaka (Oryzias latipes), have been used for many years as powerful model systems for vertebrate developmental biology. Moreover, these species are increasingly recognized as valuable systems to study vertebrate physiology, pathology, pharmacology and toxicology, including in particular bone physiology. The biology of small fishes presents many advantages, such as transparency of the embryos, external and rapid development, small size and easy reproduction. Further characteristics are particularly useful for space research or for large scale screening approaches. Finally, many technologies for easily characterizing bones are available. Our objective is to investigate the changes induced by microgravity in small fish. By combining whole genome analysis (microarray, DNA methylation, chromatin modification) with live imaging of selected genes in transgenic animals, a comprehensive and integrated characterization of physiological changes in space could be gained, especially concerning bone physiology.

  16. The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics

    NASA Astrophysics Data System (ADS)

    Salzburger, Walter; Meyer, Axel

    With more than 3,000 species, the fish family Cichlidae is one of the most species-rich families of vertebrates. Cichlids occur in southern and central America, Africa, Madagascar, and India. The hotspot of their biodiversity is East Africa, where they form adaptive radiations composed of hundreds of endemic species in several lakes of various sizes and ages. The unparalleled species richness of East African cichlids has been something of a conundrum for evolutionary biologists and ecologists, since it has been in doubt whether these hundreds of species arose by allopatric speciation or whether it is necessary to invoke somewhat less traditional models of speciation, such as micro-allopatric, peripatric, or even sympatric speciation or evolution through sexual selection mediated by female choice. Ernst Mayr's analyses of these evolutionary uniquely diverse species assemblages have contributed to a more direct approach to this problem and have led to a deeper understanding of the patterns and processes that caused the formation of these huge groups of species. We review here recent molecular data on population differentiation and phylogenetics, which have helped to unravel, to some extent, the patterns and processes that led to the formation and ecological maintenance of cichlid species flocks. It is becoming apparent that sexually selected traits do play an important role in speciation in micro-allopatric or even sympatric settings. Species richness seems to be roughly correlated with the surface area, but not the age, of the lakes. We observe that the oldest lineages of a species flock of cichlids are often less species-rich and live in the open water or deepwater habitats. While the species flocks of the Lake Malawai and the Lake Victoria areas were shown to be monophyletic, the cichlid assemblage of Lake Tanganyika seems to consist of several independent species flocks. Cichlids emerge as an evolutionary model system in which many fundamental questions in

  17. Nursery use patterns of commercially important marine fish species in estuarine systems along the Portuguese coast

    NASA Astrophysics Data System (ADS)

    Vasconcelos, R. P.; Reis-Santos, P.; Maia, A.; Fonseca, V.; França, S.; Wouters, N.; Costa, M. J.; Cabral, H. N.

    2010-03-01

    Analysing the estuarine use patterns of juveniles of marine migrant fish species is vital for identifying important sites for juveniles as well as the basic environmental features that characterize these sites for different species. This is a key aspect towards understanding nursery function. Various estuarine systems along the Portuguese coast (Minho, Douro, Ria de Aveiro, Mondego, Tejo, Sado, Mira, Ria Formosa and Guadiana) were sampled during Spring and Summer 2005 and 2006. Juveniles of commercially important marine fish species Solea solea, Solea senegalensis, Platichthys flesus, Diplodus vulgaris and Dicentrarchus labrax, predominantly 0-group individuals, were amongst the most abundant species and had distinct patterns of estuarine use as well as conspicuous associations with several environmental features. Juvenile occurrence and density varied amongst estuaries and sites within them, and differed with species. Sites with consistently high juvenile densities were identified as important juvenile sites (i.e. putative nursery grounds). Through generalized linear models (GLM), intra-estuarine variation in occurrence and density of each of the individual species was largely explained by environmental variables (temperature; salinity; depth; percentage of mud in the sediment; presence of seagrass; importance of intertidal areas; relative distance to estuary mouth; macrozoobenthos densities; and latitude). Decisive environmental factors defining important sites for juveniles varied depending on the system as a result of different environmental gradients, though there were common dominant features for each species regardless of the estuary considered. Analysed environmental variables in the GLM also accounted for inter-estuarine variation in species' occurrence and density. In several estuaries, the identified important juvenile sites were used by many of these species simultaneously and may be of increased value to both management and conservation. Overall, the

  18. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (south Florida)

    SciTech Connect

    Jory, D.E.; Iversen, E.S. . Rosenstiel School of Marine and Atmospheric Sciences)

    1989-08-01

    Black, red, and Nassau groupers (Mycteroperca bonaci, Epinephelus morio, and E. striatus, respectively) are widely distributed on rocky bottoms and reefs along the south Florida coast. They are the most valuable marine finfish group in Florida, comprising about 25% of the total value of landings in 1984. The three species can be distinguished by morphometric, meristic, and body color characteristics. Younger fish are typically found in shallow, inshore grass beds, and larger, older fish are generally restricted to deep waters. The three species are protogynous hermaphrodites. Sexual transition can occur at any length over about 300 mm SL. An offshore movement apparently coincides with the onset of sexual maturity. Spawning aggregations have been observed throughout the year, but occur mostly between late spring and early summer. Fecundity estimates range from about 800,000 to 5,000,000 eggs per female. Both the eggs and the larvae are planktonic. Their early life history is poorly known. Larvae probably leave the plankton and become benthic at around 20--30 mm SL. Growth rates range from about 2 to 10 mm/month. The three species are unspecialized carnivores, feeding on a variety of fishes, crustaceans, and mollusks. Interspecific competition for food and shelter may be common because of the overlap in distribution, habitat, size, and food habitats. For the three species, a number of predators and parasites have been reported. Both the black and red groupers have been implicated in ciguatera poisonings in south Florida. 70 refs., 3 figs., 3 tabs.

  19. Heavy metals' concentration in sediment, shrimp and two fish species from the northwest Persian Gulf.

    PubMed

    Monikh, Fazel Abdolahpur; Maryamabadi, Ammar; Savari, Ahmad; Ghanemi, Kamal

    2015-06-01

    The concentrations of heavy metals (cadmium (Cd), copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn)) were measured in hepatopancreas and muscle of a commercial shrimp (Metapenaeus affinis), in the muscle, liver and gills of two fish species (Thryssa vitrirostris and Johnius belangerii) and in the sediment samples taken from the mouth of the Arvand river, Meleh estuary and Musa estuary in the northeast Persian Gulf. Concentration of heavy metals varied depending on different tissues, species and sampling sites. Liver of fish and hepatopancreas of shrimp exhibited higher metals' concentration than the other tissues. Generally, in the mouth of the Arvand river, the highest concentration of metals was found in benthic species; while in the mouth of Musa estuary, the highest level of the metals was found in pelagic fish species. Bioaccumulation factors were observed to follow the order: J. belangerii-liver-Cd > T. vitrirostris-liver-Pb > M. affinis-hepatopancreas-Zn >M. affinis-hepatopancreas-Cu >M. affinis- hepatopancreas-Ni. The analysed heavy metals were found in sediment samples at mean concentration in the sediment quality guideline proposed by National Oceanic and Atmospheric Administration (NOAA) and Regional Organization for the Protection of The Marine Environment (ROPME), except for Ni concentration in some cases.

  20. Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (South Atlantic). Atlantic Menhaden

    SciTech Connect

    Rogers, S.G.; Van Den Avyle, M.J.

    1983-10-01

    Species profiles are literature summaries of the taxonomy, range, life history, environmental requirements, and significance of coastal aquatic species. The Atlantic menhaden, Brevoortia tyrannus, contributes 25% to 40% of the landings of the largest commercial fishery (by weight) in the United States. Landings for 1979 to 1981 averaged about 400,000 mt (440,920 t) and $38 million annually. All ages are important prey for many fishes and birds; the species is a seasonally important and migratory component of estuarine and shelf fish assemblages. In the South Atlantic, major spawning occurs from December through February near Cape Hatteras, North Carolina, in shelf waters that are 100 to 200 m (328 to 655 ft) deep. Larval Atlantic menhaden feed on zooplankton and move shoreward to estuaries after 1 to 3 months at sea. With growth, the juveniles gradually change to a less-selective, filter-feeding mode and generally migrate from estuaries to open shelf areas during late fall. Fish that exit estuaries everywhere along the Atlantic seaboard eventually disperse throughout the species' range. Atlantic menhaden occur in a broad range of temperatures and salinities. Larvae move toward low-salinity areas upon entering estuaries, and prejuveniles are dependent on low-salinity marsh habitats and river shoals for nurseries. 88 references, 2 figures, 2 tables.

  1. Host species as a strong determinant of the intestinal microbiota of fish larvae.

    PubMed

    Li, Xuemei; Yu, Yuhe; Feng, Weisong; Yan, Qingyun; Gong, Yingchun

    2012-02-01

    We investigated the influence of host species on intestinal microbiota by comparing the gut bacterial community structure of four cohabitating freshwater fish larvae, silver carp, grass carp, bighead carp, and blunt snout bream, using denaturing gradient gel electrophoresis (DGGE) of the amplified 16S and 18S rRNA genes. Similarity clustering indicated that the intestinal microbiota derived from these four fish species could be divided into four groups based on 16S rRNA gene similarity, whereas the eukaryotic 18S rRNA genes showed no distinct groups. The water sample from the shared environment contained microbiota of an independent group as indicated by both 16S and 18S rRNA genes segments. The bacterial community structures were visualized using rank-abundance plots fitted with linear regression models. Results showed that the intestinal bacterial evenness was significantly different between species (P<0.05) and between species and the water sample (P<0.01). Thirty-five relatively dominant bands in DGGE patterns were sequenced and grouped into five major taxa: Proteobacteria (26), Actinobacteria (5), Bacteroidetes (1), Firmicutes (2), and Cyanobacterial (1). Six eukaryotes were detected by sequencing 18S rRNA genes segments. The present study suggests that the intestines of the four fish larvae, although reared in the same environment, contained distinct bacterial populations, while intestinal eukaryotic microorganisms were almost identical. PMID:22367934

  2. Susceptibility of Japanese Cyprininae fish species to cyprinid herpesvirus 2 (CyHV-2).

    PubMed

    Ito, Takafumi; Maeno, Yukio

    2014-03-14

    Cyprinid herpesvirus 2 (CyHV-2) is known as the causative agent of herpesviral haematopoietic necrosis (HVHN) of goldfish (Carassius auratus). Recently, the virus has also been detected from Prussian carp (C. gibelio) and crucian carp (C. carassius) from European and Asian countries. To analyze the risk of spreading to new host species, the susceptibility of other fish species to the virus is essential. In this study experimental infections of indigenous Cyprininae species in Japan were performed by immersion in and intraperitoneal injection of a CyHV-2 isolate. Although Edonishiki, a variety of goldfish, immersed with the virus showed a cumulative mortality of 90%, no mortality was observed in ginbuna C. auratus langsdorfii, nagabuna C. auratus buergeri, nigorobuna C. auratus grandoculis and common carp Cyprinus carpio. Cumulative mortality was 100, 20 and 10% in intraperitoneally injected Edonishiki, ginbuna and nagabuna, respectively. Furthermore all Edonishiki immersed with the virus died. However, even after stimuli of sudden temperature changes, the immersed ginbuna and nagabuna did not die. Moreover no mortality was observed in co-reared Ranchu, another variety of goldfish, with immersed ginbuna and nagabuna although all three Ranchu co-reared with immersed Edonishiki died. CyHV-2 DNA was detected and the virus was re-isolated from all dead fish. Moreover CyHV-2 DNA was detected from some of the surviving Carassius spp. These results revealed that susceptibility of Japanese indigenous Cyprininae fish species to CyHV-2 is much lower than for goldfish. In addition, ability of replication of CyHV-2 might be different among Carassius fish species.

  3. Selenium and mercury in native and introduced fish species of patagonian lakes, Argentina.

    PubMed

    Arribére, M A; Ribeiro Guevara, S; Bubach, D F; Arcagni, M; Vigliano, P H

    2008-04-01

    A survey of mercury (Hg) and selenium (Se) contents was performed in fish collected from lakes located in two National Parks of the northern patagonian Andean range. Two native species, catfish (Diplomystes viedmensis) and creole perch (Percichthys trucha), and three introduced species, brown trout (Salmo trutta), rainbow trout (Oncorhynchus mykiss), and brook trout (Salvelinus fontinalis), were caught from lakes Nahuel Huapi, Moreno, Traful, Espejo Chico, and Guillelmo belonging to Nahuel Huapi National Park and from lakes Futalaufquen and Rivadavia, Los Alerces National Park. In lake Moreno, fish diet items were analyzed and rainbow trout grown in a farm. Hg and Se were measured in muscle and liver tissues by instrumental neutron activation analysis. The average concentrations in muscle of Hg for all species, ages, and lakes are between 0.4 to 1.0 microg g(-1) dry weight (DW) with a few fish, mainly native, exceeding the United States Environmental Protection Agency health advisory for freshwater fish limited consumption, and from 0.8 to 1.5 microg g(-1) DW for Se. Average concentrations in liver of Hg in all species range from 0.4 to 0.9 microg g(-1) DW. Brown trout, the top predator in these lakes, showed the lowest average Hg burden in both tissues. Se concentrations in the liver of brown and rainbow trout, up to 279 microg g(-1) DW, are higher than those expected for nearly pristine lakes, exceeding 20 microg g(-1) DW, the threshold concentration associated with Se toxicity. These species show lower Hg contents in muscle, suggesting a possible detoxification of Hg by a Se-rich diet. Creole perch and velvet catfish livers have lower Se concentrations, with a narrower span of values (2.3 to 8.5 microg g(-1) and 3.3 to 5.5 microg g(-1) DW respectively).

  4. Brain levels of nonapeptides in four labrid fish species with different levels of mutualistic behavior.

    PubMed

    Kulczykowska, Ewa; Cardoso, Sónia C; Gozdowska, Magdalena; André, Gonçalo I; Paula, José R; Ślebioda, Marek; Oliveira, Rui F; Soares, Marta C

    2015-10-01

    There is strong evidence that brain nonapeptides are implicated as modulators of a wide array of social and reproductive behaviors in fishes. However, the question remains, as to whether there is a link between the distribution of active nonapeptides across brain regions and fishes specific behavioral phenotypes. To explore this link we compared the nonapeptides' profile across the brains of fishes representing different degrees of mutualistic behavior (here: cleaning behavior). Herein we studied the quantitative distribution of both nonapeptides, arginine vasotocin (AVT) and isotocin (IT), in the brains of four species of fish belonging to the family Labridae: two are obligatory cleaners throughout their entire life (Labroides dimidiatus and Labroides bicolor), one species is a facultative cleaner (Labropsis australis; juveniles are cleaners and adults are corallivorous), and one is a non-cleaner species, corallivorous throughout its entire life (Labrichthys unilineatus). The biologically available AVT and IT concentrations were measured simultaneously in distinct brain macro-areas: forebrain, optic tectum, cerebellum and brain stem, using liquid chromatography-tandem mass spectrometry (LC-MS/MS). We showed that the levels of both AVT and IT varied significantly across species, as measured in the whole brain or in the specific macro-areas. Significantly higher AVT concentrations in the cerebellum which were found in the obligate cleaners seemed to be related to expression of mutualistic behavior. On the other hand, the higher levels of brain IT in the non-cleaner L. unilineatus suggested that these might be linked to the development of sexual dimorphism, which occurs only in this non-cleaner species. PMID:26095225

  5. Impact of salinity on early life history traits of three estuarine fish species in Senegal

    NASA Astrophysics Data System (ADS)

    Labonne, Maylis; Morize, Eric; Scolan, Pierre; Lae, Raymond; Dabas, Eric; Bohn, Marcel

    2009-05-01

    The adaptive mechanisms on the early life stages of fishes to hypersaline stress are still poorly understood and probably determine the resistance of a population to disruption, compared with other less plastic species. The Casamance River in Senegal is an ideal location to test the adaptation to salinity as a dam was built in 1998 to exclude saline water intrusion. This lowered the salinity from 70 to 5 upstream and 60 downstream. The salinity influence on the growth in the early life of three West African fish species ( Ethmalosa fimbriata, Sarotherodon melanotheron, and Tilapia guineensis) was studied using the width of microstructures in the otoliths and the individual migratory behaviour analysed from strontium (Sr) to calcium (Ca) ratios in the otoliths. The Sr:Ca ratio was quantified along individual transects measured from the posterior edge of the otolith to the core. The fishes were sampled on both sides of the dam that separated water with low salinity upstream from metahaline and hyperhaline water downstream. The results showed that salinity has different influence on the growth of each species. Ethmalosa fimbriata has the highest growth during the first 180 days in the freshwaters, indicating growth inhibition in the hyperhaline areas. For the two other species no growth difference were found. The Sr/Ca ratio varied widely, in Tilapia and Sarotherodon from below the dam. Individual life histories were more heterogeneous than upstream and showed a crossing of the dam for some individuals which could reach half of the fishes analysed. On the contrary in E. fimbriata, despite the large range of salinity, identical Sr/Ca profiles were found both upstream and downstream. This indicated that Sr/Ca ratio was not appropriate to evaluate life history patterns linked to salinity for this specie.

  6. Brain levels of nonapeptides in four labrid fish species with different levels of mutualistic behavior.

    PubMed

    Kulczykowska, Ewa; Cardoso, Sónia C; Gozdowska, Magdalena; André, Gonçalo I; Paula, José R; Ślebioda, Marek; Oliveira, Rui F; Soares, Marta C

    2015-10-01

    There is strong evidence that brain nonapeptides are implicated as modulators of a wide array of social and reproductive behaviors in fishes. However, the question remains, as to whether there is a link between the distribution of active nonapeptides across brain regions and fishes specific behavioral phenotypes. To explore this link we compared the nonapeptides' profile across the brains of fishes representing different degrees of mutualistic behavior (here: cleaning behavior). Herein we studied the quantitative distribution of both nonapeptides, arginine vasotocin (AVT) and isotocin (IT), in the brains of four species of fish belonging to the family Labridae: two are obligatory cleaners throughout their entire life (Labroides dimidiatus and Labroides bicolor), one species is a facultative cleaner (Labropsis australis; juveniles are cleaners and adults are corallivorous), and one is a non-cleaner species, corallivorous throughout its entire life (Labrichthys unilineatus). The biologically available AVT and IT concentrations were measured simultaneously in distinct brain macro-areas: forebrain, optic tectum, cerebellum and brain stem, using liquid chromatography-tandem mass spectrometry (LC-MS/MS). We showed that the levels of both AVT and IT varied significantly across species, as measured in the whole brain or in the specific macro-areas. Significantly higher AVT concentrations in the cerebellum which were found in the obligate cleaners seemed to be related to expression of mutualistic behavior. On the other hand, the higher levels of brain IT in the non-cleaner L. unilineatus suggested that these might be linked to the development of sexual dimorphism, which occurs only in this non-cleaner species.

  7. Niches of dominant fish in the waters surrounding the Taishan Islands, China

    NASA Astrophysics Data System (ADS)

    Yang, Lu; Chen, Jie; Yang, Shengyun; Zhong, Huiqi; Ju, Peilong; Yang, Shunliang; Sun, Qinqin; Chen, Mingru

    2016-07-01

    An index of relative importance (IRI) was employed to screen for dominant fish in the waters surrounding the Taishan Islands, China, using data from four seasonal trawl surveys undertaken between 2012 and 2013. Niche breadth and niche overlap were measured using the Feinsinger and Morisita-Horn indices, respectively, and the characteristics and seasonal variations in the niches of dominant fish were assessed via non-metric multidimensional scaling (NMDS) and cluster analysis. A total of 80 fish species, including 16 dominant species, were recorded. Only Amblychaeturichthys hexanema was dominant in all seasons. According to niche breadth values and NMDS, the 16 dominant species were grouped into the following three types: (1) wide niche breadth species, including Cynoglossus macrolepidotus, A. hexanema, and Trypauchen vagina, among others; (2) medium niche breadth species, including Setipinna taty and Johnius belangerii; and (3) narrow niche breadth species, including Atrobucca nibe and Coilia mystus. Most species with a wider niche breadth were demersal fish with a lower swimming capability and even distribution. The niche breadth of migrating fish was narrower than that of settled fish. At a given spatial scale, fish with stronger swimming capabilities had a narrower niche breadth. Niche overlap, which is associated with niche specialization, ranged from 0.000 to 0.886 and had an annual mean value of 0.314. In summer and autumn, niche overlap was relatively high within species of the Sciaenidae family and within species of the Gobiidae in autumn. Differences in thermophily, feeding habits, food organism abundance/distribution and predator-prey relationships affected the niche overlap of fish in this area. Cluster analysis revealed that species with the narrowest niche breadth and lowest niche overlap values usually displayed lower aggregation and greater distribution differences compared with other species.

  8. Accumulation of metals in three fish species from the Yaounde Municipal Lake in Cameroon.

    PubMed

    Léopold, Ekengele Nga; Jung, Myung Chae; Emmanuel, Ekodeck Georges

    2015-09-01

    Metals are dangerous to aquatic organisms and they can bioaccumulate in the food chain and represent risk for humans. In order to appraise their levels in fish species, concentrations of various elements including Na, Mg, K, Ca, Al, Fe, Mn, Cr, Ni, Co, Cd, Cu, Pb, Zn, Ba, and Sr were determined in the muscles and gills of three fish species (Oreochromis niloticus, Sarotherodon galilaeus, and Clarias sp.) which are more fished and consumed in the Yaounde Municipal Lake, Cameroon. According to chemical results of the fish samples analyzed by ICP-AES, the concentrations of metals (mg kg(-1), wet tissues) in those fish tissues varied as follows for the muscle (and gill) Na 1480-3780 (4180-9310), Mg 897-1250 (843-1450), K 9600-18,500 (6020-10,400), Ca 430-3900 (22,200-62,400), Al 8.10-615 (113-951), Fe 12.0-725 (307-1160), Mn 1.61-30.1 (14.3-433), Cr 1.58-267 (0.31-35.4), Ni 0.16-1.85 (1.06-2.82), Co 0.10-0.47 (0.07-0.16), Cd 0.11-0.23 (0.10-0.22), Cu 0.59-5.13 (1.31-5.13), Pb 1.11-5.12 (2.56-5.74), Zn 15.4-47.2 (45.3-69.2), Ba 0.61-51.15 (0.35-83.2), and Sr 2.31-5.74 (2.09-5.75). The results revealed that Na, Ca, Zn, Fe, and Mn were higher concentrated in the gills than in the muscles, while K, Cr, Ni, Co, and Cd were more concentrated in the muscles of the species. In addition, all the elements were bioaccumulated in the fish species and the bioaccumulation factors (BAFs) were decreased in the following order: Cr > Ni > Zn > Al > Ca > Pb > Mn > Ba > K > Fe > Mg > Cu > Na > Sr > Co > Cd. Compared to international standards, Pb, Cd, Cr, Ni, and Zn were over the recommendations of the European Community, WHO, and Norwegian guidance values for human health. Therefore, fishes from the Yaounde Municipal Lake are not advised for human consumption as toxic elements might be taken above the recommended levels. PMID:26251061

  9. Spatial variation in elemental composition of otoliths of three species of fish (family Sparidae)

    NASA Astrophysics Data System (ADS)

    Gillanders, B. M.; Kingsford, M. J.

    2003-08-01

    Determining the nursery habitat of fishes that have moved from estuarine nursery habitats is difficult. The elemental fingerprints of otoliths of three species of sparids were determined to investigate their utility as a natural tag of the nursery habitat. Juvenile Pagrus auratus (snapper), Rhabdosargus sarba (tarwhine) and Acanthopagrus australis (bream) were collected from two sites in each of 15, six and three estuaries, respectively, and their otoliths analysed by solution-based inductively coupled plasma-mass spectrometry. Significant differences in otolith chemistry were found for all three species of juveniles collected from different estuaries. The same patterns among estuaries were not seen for all species, although it was not possible to sample the same sites within an estuary for all species. For bream, significant differences in otolith chemistry were found among all three estuaries, whereas for tarwhine the six estuaries were separated into three groups. For snapper, a number of estuaries could be separated, but there was some overlap for other estuaries. All three species were collected from the same site within one estuary and their otoliths analysed. Significant differences were found among species, but the implication of this finding remains unclear as the three species show differences in microhabitat use and may also differ in age. Because the elemental fingerprints of juveniles vary among estuaries or groups of estuaries, the nursery or recruitment estuary of adult fish could now be determined by analysing the juvenile region of adult otoliths. Thus, connectivity between estuaries and open coastal populations could be determined. Such information will have major implications for fisheries management because it will provide information on the distance that fish have moved from their recruitment estuary and the number of estuaries that contribute to each adult population.

  10. Ocean acidification alters the otoliths of a pantropical fish species with implications for sensory function.

    PubMed

    Bignami, Sean; Enochs, Ian C; Manzello, Derek P; Sponaugle, Su; Cowen, Robert K

    2013-04-30

    Ocean acidification affects a wide diversity of marine organisms and is of particular concern for vulnerable larval stages critical to population replenishment and connectivity. Whereas it is well known that ocean acidification will negatively affect a range of calcareous taxa, the study of fishes is more limited in both depth of understanding and diversity of study species. We used new 3D microcomputed tomography to conduct in situ analysis of the impact of ocean acidification on otolith (ear stone) size and density of larval cobia (Rachycentron canadum), a large, economically important, pantropical fish species that shares many life history traits with a diversity of high-value, tropical pelagic fishes. We show that 2,100 μatm partial pressure of carbon dioxide (pCO2) significantly increased not only otolith size (up to 49% greater volume and 58% greater relative mass) but also otolith density (6% higher). Estimated relative mass in 800 μatm pCO2 treatments was 14% greater, and there was a similar but nonsignificant trend for otolith size. Using a modeling approach, we demonstrate that these changes could affect auditory sensitivity including a ∼50% increase in hearing range at 2,100 μatm pCO2, which may alter the perception of auditory information by larval cobia in a high-CO2 ocean. Our results indicate that ocean acidification has a graded effect on cobia otoliths, with the potential to substantially influence the dispersal, survival, and recruitment of a pelagic fish species. These results have important implications for population maintenance/replenishment, connectivity, and conservation efforts for other valuable fish stocks that are already being deleteriously impacted by overfishing. PMID:23589887

  11. Biomarkers of immunotoxicity in fish and other non-mammalian sentinel species: predictive value for mammals?

    PubMed

    Zelikoff, J T

    1998-08-01

    Through the efforts of different laboratories, a battery of immunological assays is available to predict the immunotoxicity of xenobiotics. These assays, originally developed in rodents, have been adapted for use in a variety of animal species and are now used routinely in these models to assess the immunotoxicity of different chemical classes. For example, our laboratory has employed assays that measure antibody-forming cell response to T-dependent antigens, T- and B-cell lymphoproliferation, macrophage function, and host resistance against infectious bacteria to assess metal-induced immunotoxicity in laboratory-reared Japanese medaka (Oryzias latipes); immunologically-related assays measuring antioxidant activity have also been used in this capacity. Results of the aforementioned investigations have shown the usefulness of these endpoints to reliably demonstrate chemical-mediated immunotoxicity in teleost systems. Many of these same endpoints have also proved successful for predicting the immunotoxic effects of contaminated aquatic environments in feral fish populations. For example, smallmouth bass collected from a chlorinated hydrocarbon-contaminated site demonstrated significant changes in blood cell profiles and kidney phagocyte function compared to fish collected from a 'clean water' reference site. Some of these same immune parameters have also been used successfully to predict the immunotoxicity of polluted aquatic environments in feral populations of fish-eating birds and harbor seals. While interspecies extrapolation is difficult and should be approached with caution due to variables such as metabolism and pharmacokinetics, results from these studies demonstrate the usefulness of these immune assays to predict the immunomodulating effects of xenobiotics in fish and other wildlife species, as well as the applicability of fish to serve as additional/alternate animal models for mammalian species in immunotoxicological studies. PMID:9769111

  12. Characterization of Vibrio anguillarum and closely related species isolated from farmed fish in Norway.

    PubMed Central

    Myhr, E; Larsen, J L; Lillehaug, A; Gudding, R; Heum, M; Håstein, T

    1991-01-01

    A total of 264 bacterial strains tentatively or definitely classified as Vibrio anguillarum were examined. The strains were isolated from diseased or healthy Norwegian fish after routine autopsy. With the exception of five isolates from wild saithe (Pollachius virens), the strains originated from nine different species of farmed fish. The bacteria were subjected to morphological, physiological, and biochemical studies, numerical taxonomical analyses, serotyping by slide agglutination and enzyme-linked immunosorbent assay, DNA-plasmid profiling, and in vitro antimicrobial drug susceptibility testing. The results of the microbiological studies were correlated to anamnestic information. The bacterial strains were identified as V. anguillarum serovar O1 (n = 132), serovar O2 (n = 89), serovar O4 (n = 2), serovar O8 (n = 1), and not typeable (n = 1) as well as Vibrio splendidus biovar I (n = 36) and biovar II (n = 1), Vibrio tubiashii (n = 1), and Vibrio fischerii (n = 1). V. anguillarum serovar O1 or O2 was isolated in 176 out of 179 cases of clinical vibriosis in Atlantic salmon (Salmo salar). V. anguillarum serovar O1 was the only serovar isolated from salmonid fish species other than Atlantic salmon, while V. anguillarum serovar O2 was isolated from all marine fish suffering from vibriosis. A 48-Mda plasmid was isolated from all V. anguillarum serovar O1 isolates examined. Serovar O2 isolates did not harbor any plasmids. Resistance against commonly used antibiotic compounds was not demonstrated among V. anguillarum isolates. Neither V. splendidus biovar I nor other V. anguillarum-related species appeared to be of clinical importance among salmonid fish.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1768147

  13. Ocean acidification alters the otoliths of a pantropical fish species with implications for sensory function.

    PubMed

    Bignami, Sean; Enochs, Ian C; Manzello, Derek P; Sponaugle, Su; Cowen, Robert K

    2013-04-30

    Ocean acidification affects a wide diversity of marine organisms and is of particular concern for vulnerable larval stages critical to population replenishment and connectivity. Whereas it is well known that ocean acidification will negatively affect a range of calcareous taxa, the study of fishes is more limited in both depth of understanding and diversity of study species. We used new 3D microcomputed tomography to conduct in situ analysis of the impact of ocean acidification on otolith (ear stone) size and density of larval cobia (Rachycentron canadum), a large, economically important, pantropical fish species that shares many life history traits with a diversity of high-value, tropical pelagic fishes. We show that 2,100 μatm partial pressure of carbon dioxide (pCO2) significantly increased not only otolith size (up to 49% greater volume and 58% greater relative mass) but also otolith density (6% higher). Estimated relative mass in 800 μatm pCO2 treatments was 14% greater, and there was a similar but nonsignificant trend for otolith size. Using a modeling approach, we demonstrate that these changes could affect auditory sensitivity including a ∼50% increase in hearing range at 2,100 μatm pCO2, which may alter the perception of auditory information by larval cobia in a high-CO2 ocean. Our results indicate that ocean acidification has a graded effect on cobia otoliths, with the potential to substantially influence the dispersal, survival, and recruitment of a pelagic fish species. These results have important implications for population maintenance/replenishment, connectivity, and conservation efforts for other valuable fish stocks that are already being deleteriously impacted by overfishing.

  14. Chromosomal diversity in three species of electric fish (Apteronotidae, Gymnotiformes) from the Amazon Basin.

    PubMed

    Silva, Fernando Henrique Ramos; Pieczarka, Julio Cesar; Cardoso, Adauto Lima; da Silva, Patrícia Corrêa; de Oliveira, Jonas Alves; Nagamachi, Cleusa Yoshiko

    2014-10-01

    Cytogenetic studies were carried out on samples of Parapteronotus hasemani, Sternarchogiton preto and Sternarchorhamphus muelleri (Apteronotidae, Gymnotiformes) from the Amazon basin. The first two species exhibited both a 2n = 52 karyotype, but differed in their karyotypic formulae, distribution of constitutive heterochromatin, and chromosomal location of the NOR. The third species, Sternarchorhamphus muelleri, was found to have a 2n = 32 karyotype. In all three species the DAPI and chromomycin A3 staining results were consistent with the C-banding results and nucleolar organizer region (NOR) localization. The 18S rDNA probe confirmed that there was only one pair of ribosomal DNA cistron bearers per species. The telomeric probe did not reveal interstitial telomeric sequences (ITS). The karyotypic differences among these species can be used for taxonomic identification. These data will be useful in future studies of these fishes and help understanding the phylogenetic relationships and chromosomal evolution of the Apteronotidae.

  15. Chromosomal diversity in three species of electric fish (Apteronotidae, Gymnotiformes) from the Amazon Basin

    PubMed Central

    Silva, Fernando Henrique Ramos; Pieczarka, Julio Cesar; Cardoso, Adauto Lima; da Silva, Patrícia Corrêa; de Oliveira, Jonas Alves; Nagamachi, Cleusa Yoshiko

    2014-01-01

    Cytogenetic studies were carried out on samples of Parapteronotus hasemani, Sternarchogiton preto and Sternarchorhamphus muelleri (Apteronotidae, Gymnotiformes) from the Amazon basin. The first two species exhibited both a 2n = 52 karyotype, but differed in their karyotypic formulae, distribution of constitutive heterochromatin, and chromosomal location of the NOR. The third species, Sternarchorhamphus muelleri, was found to have a 2n = 32 karyotype. In all three species the DAPI and chromomycin A3 staining results were consistent with the C-banding results and nucleolar organizer region (NOR) localization. The 18S rDNA probe confirmed that there was only one pair of ribosomal DNA cistron bearers per species. The telomeric probe did not reveal interstitial telomeric sequences (ITS). The karyotypic differences among these species can be used for taxonomic identification. These data will be useful in future studies of these fishes and help understanding the phylogenetic relationships and chromosomal evolution of the Apteronotidae. PMID:25505838

  16. Genotoxic effects of water pollution on two fish species living in Karasu River, Erzurum, Turkey.

    PubMed

    Yazıcı, Zehra; Sişman, Turgay

    2014-11-01

    Karasu River, which is the only river in the Erzurum plain, is the source of the Euphrates River (Eastern Anatolia of Turkey). The river is in a serious environmental situation as a result of pollution by agricultural and industrial sewage and domestic discharges. The present study aims to evaluate genotoxic effects of toxic metals in chub, Leuciscus cephalus, and transcaucasian barb, Capoeta capoeta, collected from contaminated site of the Karasu River, in comparison with fish from an unpolluted reference site. Heavy metal concentrations in surface water of the river were determined. The condition factor (CF) was taken as a general biomarker of the health of the fish, and genotoxicity assays such as micronucleus (MN) and other nuclear abnormalities (NA) were carried out on the fish species studied. MN and NA such as kidney-shaped nucleus, notched nucleus, binucleated, lobed nucleus, and blebbed nucleus were assessed in peripheral blood erythrocytes, gill epithelial cells, and liver cells of the fish. A significant decrease in CF values associated with a significant elevation in MN and NA frequencies was observed in fish collected from the polluted sites compared with those from the reference site. Results of the current study show the significance of integrating a set of biomarkers to identify the effects of anthropogenic pollution. High concentrations of heavy metals have a potential genotoxic effects, and the toxicity is possibly related to industrial, agricultural, and domestic activities.

  17. Risk-benefit evaluation of fish from Chinese markets: nutrients and contaminants in 24 fish species from five big cities and related assessment for human health.

    PubMed

    Du, Zhen-Yu; Zhang, Jian; Wang, Chunrong; Li, Lixiang; Man, Qingqing; Lundebye, Anne-Katrine; Frøyland, Livar

    2012-02-01

    The risks and benefits of fish from markets in Chinese cities have not previously been fully evaluated. In the present study, 24 common fish species with more than 400 individual samples were collected from markets from five big Chinese cities in 2007. The main nutrients and contaminants were measured and the risk-benefit was evaluated based on recommended nutrient intakes and risk level criteria set by relevant authorities. The comprehensive effects of nutrients and contaminants in marine oily fish were also evaluated using the data of two related human dietary intervention trials performed in dyslipidemic Chinese men and women in 2008 and 2010, respectively. The results showed that concentrations of contaminants analyzed including DDT, PCB(7), arsenic and cadmium were much lower than their corresponding maximum limits with the exception of the mercury concentration in common carp. Concentrations of POPs and n-3 LCPUFA, mainly EPA and DHA, were positively associated with the lipid content of the fish. With a daily intake of 80-100g marine oily fish, the persistent organic pollutants in fish would not counteract the beneficial effects of n-3 LCPUFA in reducing cardiovascular disease (CVD) risk markers. Marine oily fish provided more effective protection against CVD than lean fish, particularly for the dyslipidemic populations. The risk-benefit assessment based on the present daily aquatic product intake in Chinese urban residents (44.9 and 62.3g for the average values for all cities and big cities, respectively) indicated that fish, particularly marine oily fish, can be regularly consumed to achieve optimal nutritional benefits from n-3 LCPUFA, without causing significant contaminant-related health risks. However, the potential health threat from contaminants in fish should still be emphasized for the populations consuming large quantities of fish, particularly wild fish.

  18. Variations in the Microcystin Content of Different Fish Species Collected from a Eutrophic Lake

    PubMed Central

    Schmidt, Justine R.; Shaskus, Mylynda; Estenik, John F.; Oesch, Carl; Khidekel, Roman; Boyer, Gregory L.

    2013-01-01

    Microcystins produced from cyanobacteria can accumulate in fish tissues. Liquid chromatography coupled with tandem quadrupole mass spectrometry (LC-MS/MS) is an attractive alternative to immunoassays for the determination of low concentrations of microcystins in tissues. Fish taken from Grand Lake St. Marys, a eutrophic lake in Ohio, USA, were analyzed for microcystin-LR in their fillets using LC-MS/MS. Of 129 fish tested for microcystins, only black crappie (Pomoxis nigromaculatus) and common carp (Cyprinus carpio) tested positive for microcystin-LR. Less than 10% of Pomoxis and 7% of Cyprinus samples contained measurable levels of microcystin-LR. Statistical analysis yielded a p-value of 0.07 between Pomoxis and the pooled results of the other four fish species. However, this comparison was complicated by the large difference in sample size between species. Further sampling in Grand Lake St. Marys for microcystin-LR would help determine if microcystin-LR exposure occurs through foodweb transfer. PMID:23676698

  19. Identification of Anisakis species (Nematoda: Anisakidae) in marine fish hosts from Papua New Guinea.

    PubMed

    Koinari, M; Karl, S; Elliot, A; Ryan, U; Lymbery, A J

    2013-03-31

    The third-stage larvae of several genera of anisakid nematodes are important etiological agents for zoonotic human anisakiasis. The present study investigated the prevalence of potentially zoonotic anisakid larvae in fish collected on the coastal shelves off Madang and Rabaul in Papua New Guinea (PNG) where fish represents a major component of the diet. Nematodes were found in seven fish species including Decapterus macarellus, Gerres oblongus, Pinjalo lewisi, Pinjalo pinjalo, Selar crumenophthalmus, Scomberomorus maculatus and Thunnus albacares. They were identified by both light and scanning electron microscopy as Anisakis Type I larvae. Sequencing and phylogenetic analysis of the ribosomal internal transcribed spacer (ITS) and the mitochondrial cytochrome C oxidase subunit II (cox2) gene identified all nematodes as Anisakis typica. This study represents the first in-depth characterisation of Anisakis larvae from seven new fish hosts in PNG. The overall prevalence of larvae was low (7.6%) and no recognised zoonotic Anisakis species were identified, suggesting a very low threat of anisakiasis in PNG.

  20. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic)

    SciTech Connect

    Rogers, S.G.; Van Den Avyle, M.J.

    1989-08-01

    Species profiles are literature summaries of the life history, distribution and environmental requirements of coastal fishes and invertebrates. Profiles are prepared to assist with environmental impact assessment. The Atlantic menhaden (Brevoortia tyrannus) is an important commercial fish along the Atlantic coast. In the South Atlantic Region, Atlantic menhaden spawn during winter in continental shelf waters. Adults then move inshore and northward in spring; some move into estuaries as far as the brackish-freshwater boundary. Atlantic menhaden larvae in the South Atlantic Region enter estuaries after 1 to 3 months at sea. Young fish move into the shallow regions of estuaries and seem to prefer vegetated marsh habitats. Atlantic menhaden are size-selective plankton feeders as larvae, and filter feeders as juveniles and adults. Due to their large population size, individual growth rates, and seasonal movements, Atlantic menhaden annually consume and redistribute large amounts of energy and materials. They are also important prey for large game fishes such as bluefish (Pomatomus saltatrix), striped bass (Morone saxatilis), and bluefin tuna (Thunnus thynnus). The Atlantic menhaden is associated with estuarine and nearshore systems during all phases of its life cycle. Young menhaden require these food-rich habitats to survive and grown. Destruction of estuarine wetlands has decreased nursery habitat available to Atlantic menhaden and other estuarine wetlands has decreased nursery habitat available to Atlantic menhaden and other estuarine-dependent species. 115 refs., 2 figs., 2 tabs.

  1. Identification of Anisakis species (Nematoda: Anisakidae) in marine fish hosts from Papua New Guinea.

    PubMed

    Koinari, M; Karl, S; Elliot, A; Ryan, U; Lymbery, A J

    2013-03-31

    The third-stage larvae of several genera of anisakid nematodes are important etiological agents for zoonotic human anisakiasis. The present study investigated the prevalence of potentially zoonotic anisakid larvae in fish collected on the coastal shelves off Madang and Rabaul in Papua New Guinea (PNG) where fish represents a major component of the diet. Nematodes were found in seven fish species including Decapterus macarellus, Gerres oblongus, Pinjalo lewisi, Pinjalo pinjalo, Selar crumenophthalmus, Scomberomorus maculatus and Thunnus albacares. They were identified by both light and scanning electron microscopy as Anisakis Type I larvae. Sequencing and phylogenetic analysis of the ribosomal internal transcribed spacer (ITS) and the mitochondrial cytochrome C oxidase subunit II (cox2) gene identified all nematodes as Anisakis typica. This study represents the first in-depth characterisation of Anisakis larvae from seven new fish hosts in PNG. The overall prevalence of larvae was low (7.6%) and no recognised zoonotic Anisakis species were identified, suggesting a very low threat of anisakiasis in PNG. PMID:23290280

  2. Development of a probabilistic PCB-bioaccumulation model for six fish species in the Hudson River

    SciTech Connect

    Stackelberg, K. von; Menzie, C.

    1995-12-31

    In 1984 the US Environmental Protection Agency (USEPA) completed a Feasibility Study on the Hudson River that investigated remedial alternatives and issued a Record of Decision (ROD) later that year. In December 1989 USEPA decided to reassess the No Action decision for Hudson River sediments. This reassessment consists of three phases: Interim Characterization and Evaluation (Phase 1); Further Site Characterization and Analysis (Phase 2); and, Feasibility study (Phase 3). A Phase 1 report was completed in August, 1991. The team then completed a Final Work Plan for Phase 2 in September 1992. This work plan identified various PCB fate and transport modeling activities to support the Hudson River PCB Reassessment Remedial Investigation and Feasibility Study (RI/FS). This talk provides a description of the development of a Probabilistic bioaccumulation models to describe the uptake of PCBs on a congener-specific basis in six fish species. The authors have developed a framework for relating body burdens of PCBs in fish to exposure concentrations in Hudson River water and sediments. This framework is used to understand historical and current relationships as well as to predict fish body burdens for future conditions under specific remediation and no action scenarios. The framework incorporates a probabilistic approach to predict distributions in PCB body burdens for selected fish species. These models can predict single population statistics such as the average expected values of PCBs under specific scenarios as well as the distribution of expected concentrations.

  3. Evaluation of a method for quantifying eugenol concentrations in the fillet tissue from freshwater fish species

    USGS Publications Warehouse

    Meinertz, Jeffery R.; Schreier, Theresa M.; Porcher, Scott T.; Smerud, Justin R.

    2016-01-01

    AQUI-S 20E® (active ingredient, eugenol; AQUI-S New Zealand Ltd, Lower Hutt, New Zealand) is being pursued for approval as an immediate-release sedative in the United States. A validated method to quantify the primary residue (the marker residue) in fillet tissue from AQUI-S 20E–exposed fish was needed. A method was evaluated for determining concentrations of the AQUI-S 20E marker residue, eugenol, in freshwater fish fillet tissue. Method accuracies from fillet tissue fortified at nominal concentrations of 0.15, 1, and 60 μg/g from six fish species ranged from 88–102%. Within-day and between-day method precisions (% CV) from the fortified tissue were ≤8.4% CV. There were no coextracted compounds from the control fillet tissue of seven fish species that interfered with eugenol analyses. Six compounds used as aquaculture drugs did not interfere with eugenol analyses. The lower limit of quantitation (LLOQ) was 0.012 μg/g. The method was robust, i.e., in most cases, minor changes to the method did not impact method performance. Eugenol was stable in acetonitrile–water (3 + 7, v/v) for at least 14 days, in fillet tissue extracts for 4 days, and in fillet tissue stored at ~ −80°C for at least 84 days.

  4. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (North Atlantic)

    SciTech Connect

    Buckley, J.

    1989-08-01

    Species profiles are literature summaries of the taxonomy, life history, and environmental requirements of coastal fishes and aquatic invertebrates. They are designed to assist with environmental impact assessments. The rainbow smelt is an abundant forage fish for commercially and recreationally valuable fishes such as striped bass and bluefish on the East Coast and several species of salmon and trout in the Great Lakes. The rainbow smelt also supports an important sportfishery throughout most of its range. In 1976, the total smelt harvest in the coastal waters of New England was 105,000 lb. Coastal rainbow smelt are anadromous, spawning in freshwater and maturing in saline water. Spawning peaks in spring. Salinities above 12 ppt were fatal to eggs. Reported fecundities are 7,000 to 44,000 eggs per female. Smelt are always found in shallow water (<6 m deep) and within 2 km of the shore. Larval and juvenile smelt along the coast feed on planktonic crustaceans. Larger juveniles and adults feed on euphausiids, amphipods, on planktonic crustaceans. Larger juveniles and adults feed on euphausiids, amphipods, polychaetes, and fish. Smelt move locally to search for optimum water temperatures. 46 refs., 2 figs., 1 tab.

  5. Organochlorine pesticides in bird species and their prey (fish) from the Ethiopian Rift Valley region, Ethiopia.

    PubMed

    Yohannes, Yared Beyene; Ikenaka, Yoshinori; Nakayama, Shouta M M; Ishizuka, Mayumi

    2014-09-01

    Organochlorine pesticides (OCPs) and stable isotopes were measured in muscle from 4 bird and 5 fish species from the Ethiopian Rift Valley region where DDT is used for malaria control and vast agricultural activities are carried out. We investigated the bioaccumulation of OCPs such as DDTs, HCHs, chlordanes, and heptachlors between the species, and examined the potential risk posed by these compounds for bird species. Significant differences in contaminant profiles and levels were observed within the species. Levels of total OCPs ranged from 3.7 to 148.7 μg/g lipid in bird and 0.04 to 10.9 μg/g lipid in fish species. DDTs were the predominant contaminant, and a positive relationship between δ(15)N and ΣDDT concentrations was found. The main DDT metabolite, p,p'-DDE was the most abundant and significantly greater concentrations in bird species (up to 138.5 μg/g lipid), which could have deleterious effects on survival and/or reproduction of birds. PMID:24907858

  6. Organochlorine pesticides in bird species and their prey (fish) from the Ethiopian Rift Valley region, Ethiopia.

    PubMed

    Yohannes, Yared Beyene; Ikenaka, Yoshinori; Nakayama, Shouta M M; Ishizuka, Mayumi

    2014-09-01

    Organochlorine pesticides (OCPs) and stable isotopes were measured in muscle from 4 bird and 5 fish species from the Ethiopian Rift Valley region where DDT is used for malaria control and vast agricultural activities are carried out. We investigated the bioaccumulation of OCPs such as DDTs, HCHs, chlordanes, and heptachlors between the species, and examined the potential risk posed by these compounds for bird species. Significant differences in contaminant profiles and levels were observed within the species. Levels of total OCPs ranged from 3.7 to 148.7 μg/g lipid in bird and 0.04 to 10.9 μg/g lipid in fish species. DDTs were the predominant contaminant, and a positive relationship between δ(15)N and ΣDDT concentrations was found. The main DDT metabolite, p,p'-DDE was the most abundant and significantly greater concentrations in bird species (up to 138.5 μg/g lipid), which could have deleterious effects on survival and/or reproduction of birds.

  7. Testing for synchrony in recruitment among four Lake Michigan fish species

    USGS Publications Warehouse

    Bunnell, David; Höök, Tomas O.; Troy, Cary D.; Liu, Wentao; Madenjian, Charles P.; Adams, Jean V.

    2016-01-01

    In the Great Lakes region, multiple fish species display intra-specific spatial synchrony in 28 recruitment success, with inter-annual climate variation hypothesized as the most likely driver. 29 In Lake Michigan, we evaluated whether climatic or other physical variables could also induce 30 spatial synchrony across multiple species, including bloater (Coregonus hoyi), rainbow smelt 31 (Osmerus mordax), yellow perch (Perca flavescens), and alewife (Alosa pseudoharengus). The 32 residuals from stock-recruitment relationships revealed yellow perch recruitment to be correlated 33 with recruitment of both rainbow smelt (r = 0.37) and alewife (r = 0.36). Across all four species, 34 higher than expected recruitment occurred in 5 years between 1978 and 1987 and then switched 35 to lower than expected recruitment in 5 years between 1996 and 2004. Generalized additive 36 models revealed warmer spring and summer water temperatures and lower wind speeds 37 corresponded to higher than expected recruitment for the nearshore-spawning species, and 38 overall variance explained ranged from 14% (yellow perch) to 61% (alewife). For all species 39 but rainbow smelt, higher recruitment also occurred in extremely high or low years of the North 40 Atlantic Oscillation index. Future development of indices that describe the physical Great Lakes 41 environment could improve understanding of how climate can synchronize fish populations 42 within and across species.

  8. Feeding ecology of indigenous and non-indigenous fish species within the family Sphyraenidae.

    PubMed

    Kalogirou, S; Mittermayer, F; Pihl, L; Wennhage, H

    2012-06-01

    The feeding ecology of two common indigenous (Sphyraena viridensis and Sphyraena sphyraena) and one abundant non-indigenous sphyraenid species, Sphyraena chrysotaenia, of Indo-Pacific Ocean origin, was investigated in an area of the eastern Mediterranean Sea. The stomach contents of 738 individuals of varying size, collected during the period December 2008 to August 2009, were examined. The dietary analyses revealed that all three species were specialized piscivores with a diet consisting of >90% fish, both by number and mass. Concurrent sampling of the fish assemblage made it possible to calculate selectivity as well as diet breadth and overlap of these strict piscivores. Even though several prey species were found in the stomachs of the three predators examined, selectivity towards Atherina boyeri was highly significant. For all species examined, >70% of the diet by mass was made up by three indigenous species of commercial value: Spicara smaris, Boops boops and A. boyeri. Diet breadth and size of prey increased with increasing body size for all predators. With increased body size, the diet overlap between indigenous and non-indigenous species decreased. This could be attributed to increased diet breadth and the specific life-history characteristics of indigenous species developing into larger individuals. During winter, the condition factor of the non-indigenous species was significantly lower than that of the indigenous, indicating that winter conditions in the Mediterranean Sea may limit its further expansion north and westward. With this study, the gap in knowledge of the feeding preferences of the most abundant piscivorous species found in coastal areas of the study region is filled. Additionally, the results indicate that non-indigenous species familial affiliation to indigenous ones does not facilitate invasion success. PMID:22650432

  9. Can Species Distribution Models Aid Bioassessment when Reference Sites are Lacking? Tests Based on Freshwater Fishes

    NASA Astrophysics Data System (ADS)

    Labay, Ben J.; Hendrickson, Dean A.; Cohen, Adam E.; Bonner, Timothy H.; King, Ryan S.; Kleinsasser, Leroy J.; Linam, Gordon W.; Winemiller, Kirk O.

    2015-10-01

    Recent literature reviews of bioassessment methods raise questions about use of least-impacted reference sites to characterize natural conditions that no longer exist within contemporary landscapes. We explore an alternate approach for bioassessment that uses species site occupancy data from museum archives as input for species distribution models (SDMs) stacked to predict species assemblages of freshwater fishes in Texas. When data for estimating reference conditions are lacking, deviation between richness of contemporary versus modeled species assemblages could provide a means to infer relative biological integrity at appropriate spatial scales. We constructed SDMs for 100 freshwater fish species to compare predicted species assemblages to data on contemporary assemblages acquired by four independent surveys that sampled 269 sites. We then compared site-specific observed/predicted ratios of the number of species at sites to scores from a multimetric index of biotic integrity (IBI). Predicted numbers of species were moderately to strongly correlated with the numbers observed by the four surveys. We found significant, though weak, relationships between observed/predicted ratios and IBI scores. SDM-based assessments identified patterns of local assemblage change that were congruent with IBI inferences; however, modeling artifacts that likely contributed to over-prediction of species presence may restrict the stand-alone use of SDM-derived patterns for bioassessment and therefore warrant examination. Our results suggest that when extensive standardized survey data that include reference sites are lacking, as is commonly the case, SDMs derived from generally much more readily available species site occupancy data could be used to provide a complementary tool for bioassessment.

  10. Variability of PCB burden in 5 fish and sharks species of the French Mediterranean continental slope.

    PubMed

    Cresson, Pierre; Fabri, Marie Claire; Miralles, Françoise Marco; Dufour, Jean-Louis; Elleboode, Romain; Sevin, Karine; Mahé, Kelig; Bouchoucha, Marc

    2016-05-01

    Despite being generally located far from contamination sources, deep marine ecosystems are impacted by chemicals like PCB. The PCB contamination in five fish and shark species collected in the continental slope of the Gulf of Lions (NW Mediterranean Sea) was measured, with a special focus on intra- and interspecific variability and on the driving factors. Significant differences occurred between species. Higher values were measured in Scyliorhinus canicula, Galeus melastomus and Helicolenus dactylopterus and lower values in Phycis blennoides and Lepidorhombus boscii. These differences might be explained by specific abilities to accumulate and eliminate contaminant, mostly through cytochrome P450 pathway. Interindividual variation was also high and no correlation was observed between contamination and length, age or trophic level. Despite its major importance, actual bioaccumulation of PCB in deep fish is not as documented as in other marine ecosystems, calling for a better assessment of the factors driving individual bioaccumulation mechanisms and originating high variability in PCB contamination. PMID:26874319

  11. Changes over 50 years in fish fauna of a temperate coastal sea: Degradation of trophic structure and nursery function

    NASA Astrophysics Data System (ADS)

    van der Veer, Henk W.; Dapper, Rob; Henderson, Peter A.; Jung, A. Sarina; Philippart, Catharina J. M.; Witte, Johannes IJ.; Zuur, Alain F.

    2015-03-01

    The ongoing daily sampling programme of the fish fauna in the Dutch Wadden Sea using fixed gear was analysed for the years 1960-2011. Spring sampling caught immigrating fish from the coastal zone and autumn samples reflected emigration of young-of-the-year. In total 82 fish species were caught with no clear trend in biodiversity. In both spring and autumn total daily catch fluctuated and peaked in the late 1970s. From 1980 to the present catches of both pelagic and demersal species showed a 10-fold decrease in total biomass. Mean individual biomass decreased in spring between 1980 and the present from about 150 to 20 g wet weight. No trend was found in autumn mean individual biomass which fluctuated around 20 g wet weight. The trophic structure remained constant for both the demersal and benthopelagic fish fauna from 1980 to 2011, whilst the trophic position of pelagic fish in spring fell from about 3.9 to 3.1. Min/max auto-correlation factor analysis showed similar trends in spring and autumn species biomass time series: the first axis represented a decrease from the 1960s followed by stabilization from the mid-1990s. The second trend showed an increase with a maximum around 1980 followed by a steady decrease in spring and a decrease and stabilization from 2000 in autumn. It is argued that the most likely explanatory variables are a combination of external factors: increased water temperature, habitat destruction in the coastal zone (sand dredging and beach nourishment, fishing) and increased predation by top predators for the first trend, and large-scale hydrodynamic circulation for the second trend. We conclude that both the trophic structure of the coastal zone fauna and the nursery function of the Wadden Sea have been reduced since the 1980s. Our findings corroborate that ecological change in coastal ecosystems has not only occurred in the past but still continues.

  12. A comparison of spring larval fish assemblages in the Strait of Georgia (British Columbia, Canada) between the early 1980s and late 2000s

    NASA Astrophysics Data System (ADS)

    Guan, Lu; Dower, John F.; McKinnell, Skip M.; Pepin, Pierre; Pakhomov, Evgeny A.; Hunt, Brian P. V.

    2015-11-01

    The concentration and composition of the larval fish assemblage in the Strait of Georgia (British Columbia, Canada) has changed between the early 1980s (1980 and 1981) and the late 2000s (2007, 2009 and 2010). During both periods, the spring larval fish assemblages were dominated by pelagic species: Clupea pallasi (Pacific herring), Merluccius productus (Pacific hake), Leuroglossus schmidti (northern smoothtongue) and Theragra chalcogramma (walleye Pollock). The average concentration of Merluccius productus, Theragra chalcogramma, Leuroglossus schmidti, and Sebastes spp. declined between the early 1980s and the late 2000s; in contrast, the absolute concentration and proportion of Pleuronectidae and several demersal fish taxa increased in the spring larval assemblage. Examination of the associations between larval fish assemblages and environmental fluctuations suggests that large-scale climate processes are potential contributors to variations in overall larval concentrations of the dominant taxa and assemblage composition in the Strait of Georgia.

  13. Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae).

    PubMed

    Bagley, Justin C; Alda, Fernando; Breitman, M Florencia; Bermingham, Eldredge; van den Berghe, Eric P; Johnson, Jerald B

    2015-01-01

    Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve biodiversity. However, species delimitation is problematic in many taxa, including 'non-adaptive radiations' containing morphologically cryptic lineages. Fortunately, coalescent-based species delimitation methods hold promise for objectively estimating species limits in such radiations, using multilocus genetic data. Using coalescent-based approaches, we delimit species and infer evolutionary relationships in a morphologically conserved group of Central American freshwater fishes, the Poecilia sphenops species complex. Phylogenetic analyses of multiple genetic markers (sequences of two mitochondrial DNA genes and five nuclear loci) from 10/15 species and genetic lineages recognized in the group support the P. sphenops species complex as monophyletic with respect to outgroups, with eight mitochondrial 'major-lineages' diverged by ≥2% pairwise genetic distances. From general mixed Yule-coalescent models, we discovered (conservatively) 10 species within our concatenated mitochondrial DNA dataset, 9 of which were strongly supported by subsequent multilocus Bayesian species delimitation and species tree analyses. Results suggested species-level diversity is underestimated or overestimated by at least ~15% in different lineages in the complex. Nonparametric statistics and coalescent simulations indicate genealogical discordance among our gene tree results has mainly derived from interspecific hybridization in the nuclear genome. However, mitochondrial DNA show little evidence for introgression, and our species delimitation results appear robust to effects of this process. Overall, our findings support the utility of combining multiple lines of genetic evidence and broad phylogeographical sampling to discover and validate species using coalescent-based methods. Our study also highlights the importance of testing for

  14. Assessing Species Boundaries Using Multilocus Species Delimitation in a Morphologically Conserved Group of Neotropical Freshwater Fishes, the Poecilia sphenops Species Complex (Poeciliidae)

    PubMed Central

    Bagley, Justin C.; Alda, Fernando; Breitman, M. Florencia; Bermingham, Eldredge; van den Berghe, Eric P.; Johnson, Jerald B.

    2015-01-01

    Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve biodiversity. However, species delimitation is problematic in many taxa, including ‘non-adaptive radiations’ containing morphologically cryptic lineages. Fortunately, coalescent-based species delimitation methods hold promise for objectively estimating species limits in such radiations, using multilocus genetic data. Using coalescent-based approaches, we delimit species and infer evolutionary relationships in a morphologically conserved group of Central American freshwater fishes, the Poecilia sphenops species complex. Phylogenetic analyses of multiple genetic markers (sequences of two mitochondrial DNA genes and five nuclear loci) from 10/15 species and genetic lineages recognized in the group support the P. sphenops species complex as monophyletic with respect to outgroups, with eight mitochondrial ‘major-lineages’ diverged by ≥2% pairwise genetic distances. From general mixed Yule-coalescent models, we discovered (conservatively) 10 species within our concatenated mitochondrial DNA dataset, 9 of which were strongly supported by subsequent multilocus Bayesian species delimitation and species tree analyses. Results suggested species-level diversity is underestimated or overestimated by at least ~15% in different lineages in the complex. Nonparametric statistics and coalescent simulations indicate genealogical discordance among our gene tree results has mainly derived from interspecific hybridization in the nuclear genome. However, mitochondrial DNA show little evidence for introgression, and our species delimitation results appear robust to effects of this process. Overall, our findings support the utility of combining multiple lines of genetic evidence and broad phylogeographical sampling to discover and validate species using coalescent-based methods. Our study also highlights the importance of

  15. Selenium and mercury molar ratios in saltwater fish from New Jersey: individual and species variability complicate use in human health fish consumption advisories.

    PubMed

    Burger, Joanna; Gochfeld, Michael

    2012-04-01

    Balancing risk versus benefits to humans and other organisms from consuming fish is a national concern in the USA, as well as in many other parts of the world. Protecting public health is both a federal and state responsibility, and states respond by issuing fish consumption advisories, particularly for mercury. Recently it has been emphasized that the protective role of selenium against mercury toxicity depends on their molar ratios, which should be evaluated as an indication of selenium's protective capacity, and incorporated in risk assessments for fish consumption. However, there is no single "protective" ratio agreed upon. In this paper we examine the selenium:mercury (Se:Hg) molar ratios in a wide range of saltwater fish caught and eaten by recreational fishers along the New Jersey coast. We were particularly interested in interspecific and intraspecific variability, and whether the molar ratios were consistent within a species, allowing for its use in managing risk. The selenium-mercury molar ratio showed significant variation among and within fish species. The molar ratio decreased with the size of the fish species, decreased with the mercury levels, and within a fish species, the selenium:mercury ratio decreased with fish size. As an essential element, selenium undergoes some homeostatic regulation, but it is also highly toxic. Within species, mercury level tends to increase with size, accounting for the negative relationship between size and ratio. This variability may make it difficult to use the selenium:mercury molar ratio in risk assessment, risk management, and risk communication at this time, and more information is needed on how mercury and selenium actually interact and on the relationship between the molar ratios and health outcomes. PMID:22405995

  16. Selenium and mercury molar ratios in saltwater fish from New Jersey: Individual and species variability complicate use in human health fish consumption advisories☆

    PubMed Central

    Burger, Joanna; Gochfeld, Michael

    2014-01-01

    Balancing risk versus benefits to humans and other organisms from consuming fish is a national concern in the USA, as well as in many other parts of the world. Protecting public health is both a federal and state responsibility, and states respond by issuing fish consumption advisories, particularly for mercury. Recently it has been emphasized that the protective role of selenium against mercury toxicity depends on their molar ratios, which should be evaluated as an indication of selenium’s protective capacity, and incorporated in risk assessments for fish consumption. However, there is no single “protective” ratio agreed upon. In this paper we examine the selenium:mercury (Se:Hg) molar ratios in a wide range of saltwater fish caught and eaten by recreational fishers along the New Jersey coast. We were particularly interested in interspecific and intraspecific variability, and whether the molar ratios were consistent within a species, allowing for its use in managing risk. The selenium–mercury molar ratio showed significant variation among and within fish species. The molar ratio decreased with the size of the fish species, decreased with the mercury levels, and within a fish species, the selenium:mercury ratio decreased with fish size. As an essential element, selenium undergoes some homeostatic regulation, but it is also highly toxic. Within species, mercury level tends to increase with size, accounting for the negative relationship between size and ratio. This variability may make it difficult to use the selenium:mercury molar ratio in risk assessment, risk management, and risk communication at this time, and more information is needed on how mercury and selenium actually interact and on the relationship between the molar ratios and health outcomes. PMID:22405995

  17. [Fish community structure and its relationships with environmental factors in Haizhou Bay and adjacent waters of East China in winter].

    PubMed

    Wang, Xiao-Lin; Xu, Bin-Duo; Ji, Yu-Peng; Ren, Yi-Ping

    2013-06-01

    Based on the bottom trawl survey and environmental investigation data in December 2011, and by using species diversity indices and multi-element analysis, this paper studied the species composition, species diversity, and spatial pattern of fish community as well as their relationships with environmental factors in Haizhou Bay and adjacent waters. A total of 60 fish species were captured, belonging to 51 genera, 34 families, and 10 orders, and mainly composed of warm temperature and warm water demersal fishes. The Margalef species richness index, Shannon diversity index, and Pielou evenness index ranged from 1.14 to 2.84, 1.08 to 2.64, and 0.41 to 0.83, respectively. Cluster analysis and non-metric multidimensional scaling (MDS) analysis showed that the fish community could be spatially clustered into three groups. Group I was in the north of 35 N, group II was in the inshore waters near bay-head, and group III was in the south of 35 degrees N. ANOSIM analysis showed that there existed highly significant differences (R = 0.45-0.91) in the fish species composition among the groups. The canonical correspondence analysis (CCA) indicated that the bottom water temperature, water depth, and sea surface salinity were the most important environmental variables affecting the spatial pattern of fish community in Haizhou Bay and adjacent waters in winter.

  18. Genome analysis of Betanodavirus from cultured marine fish species in Malaysia.

    PubMed

    Ransangan, Julian; Manin, Benny Obrain

    2012-04-23

    Betanodavirus is the causative agent of the viral nervous necrosis (VNN) or viral encephalopathy and retinopathy disease in marine fish. This disease is responsible for most of the mass mortalities that occurred in marine fish hatcheries in Malaysia. The genome of this virus consists of two positive-sense RNA molecules which are the RNA1 and RNA2. The RNA1 molecule contains the RdRp gene which encodes for the RNA-dependent RNA polymerase and the RNA2 molecule contains the Cp gene which encodes for the viral coat protein. In this study, total RNAs were extracted from 32 fish specimens representing the four most cultured marine fish species in Malaysia. The fish specimens were collected from different hatcheries and aquaculture farms in Malaysia. The RNA1 was successfully amplified using three pairs of overlapping PCR primers whereas the RNA2 was amplified using a pair of primers. The nucleotide analysis of RdRp gene revealed that the Betanodavirus in Malaysia were 94.5-99.7% similar to the RGNNV genotype, 79.8-82.1% similar to SJNNV genotype, 81.5-82.4% similar to BFNNV genotype and 79.8-80.7% similar to TPNNV genotype. However, they showed lower similarities to FHV (9.4-14.2%) and BBV (7.2-15.7%), respectively. Similarly, the Cp gene revealed that the viruses showed high nucleotide similarity to RGNNV (95.9-99.8%), SJNNV (72.2-77.4%), BFNNV (80.9-83.5%), TPNNV (77.2-78.1%) and TNV (75.1-76.5%). However, as in the RdRp gene, the coat protein gene was highly dissimilar to FHV (3.0%) and BBV (2.6-4.1%), respectively. Based on the genome analysis, the Betanodavirus infecting cultured marine fish species in Malaysia belong to the RGNNV genotype. However, the phylogenetic analysis of the genes revealed that the viruses can be further divided into nine sub-groups. This has been expected since various marine fish species of different origins are cultured in Malaysia.

  19. Metals and other elements in tissues of wild fish from fish farms and comparison with farmed species in sites with oxic and anoxic sediments.

    PubMed

    Kalantzi, Ioanna; Black, Kenneth D; Pergantis, Spiros A; Shimmield, Tracy M; Papageorgiou, Nafsika; Sevastou, Katerina; Karakassis, Ioannis

    2013-11-15

    Farmed fish and wild fish aggregating in the vicinity of four Mediterranean fish farms with different environmental conditions were sampled. Levels of metals (including As and Se) were measured in the muscle, liver, gills, bone and intestine. The wild fish from sites with anoxic substrata accumulate metals (including As and Se) from the ambient habitat in their gills whereas those from sites with oxic substrata concentrate these elements through their diet in their intestine. Tissues of wild fish aggregating around farm cages accumulate a greater number of these elements and with higher concentrations than farmed fish. Habitat, diet, ecological needs, fat content of fish, and protein expression may play an important role in these element differences between fish species. Fe in flathead grey mullet, As in surmullet, rainbow wrasse, grey gurnard and picarel and Hg in bogue may pose a risk for human health. Farmed and wild fish are good sources of P, K, Cr and Se while flathead grey mullet, picarel and comber are excellent sources of Ca and Se.

  20. Relation between species assemblages of fishes and water quality in salt ponds and sloughs in South San Francisco Bay

    USGS Publications Warehouse

    Mejia, F.; Saiki, M.K.; Takekawa, J.Y.

    2008-01-01

    This study was conducted to characterize fishery resources inhabiting salt-evaporation ponds and sloughs in South San Francisco Bay, and to identify key environmental variables that influence distribution of fishes. The ponds, which were originally constructed and operated for commercial production of salt, have undergone preliminary modifications (installation of culverts, gates, and other water-control structures) in preparation for full restoration to mostly tidal wetlands over the next 2 decades. We sampled fish from two salt-pond complexes (Alviso complex and Eden Landing complex), each consisting of several pond systems and their associated sloughs. Cluster analysis of species of fish indicated that at least two species assemblages were present, one characteristic of ponds and the other characteristic of sloughs and slough-like ponds. The slough-like ponds exhibited water-quality conditions (especially salinity) that resembled conditions found in the sloughs. Pond fishes were represented by 12 species, whereas slough fishes were represented by 22 species. Except for bay pipefish (Syngnathus leptorhynchus), which was unique to ponds, all species present in ponds also were in sloughs and slough-like ponds. These results indicated that species of fish in ponds originated from the sloughs. According to canonical-discriminant analysis, four environmental variables were useful for discriminating between the two species assemblages. Most discriminatory power was contributed by the index of habitat connectivity, a measure of minimum distance that a fish must travel to reach a particular pond from the nearest slough. Apparently, as fish from sloughs enter and move through interconnected salt ponds, environmental stress factors increase in severity until only the more tolerant species remain. The most likely source of stress is salinity, because this variable was second in importance to the index of habitat connectivity in discriminating between the two species

  1. Evidence of population resistance to extreme low flows in a fluvial-dependent fish species

    USGS Publications Warehouse

    Katz, Rachel A.; Freeman, Mary C.

    2015-01-01

    Extreme low streamflows are natural disturbances to aquatic populations. Species in naturally intermittent streams display adaptations that enhance persistence during extreme events; however, the fate of populations in perennial streams during unprecedented low-flow periods is not well-understood. Biota requiring swift-flowing habitats may be especially vulnerable to flow reductions. We estimated the abundance and local survival of a native fluvial-dependent fish species (Etheostoma inscriptum) across 5 years encompassing historic low flows in a sixth-order southeastern USA perennial river. Based on capturemark-recapture data, the study shoal may have acted as a refuge during severe drought, with increased young-of-the-year (YOY) recruitment and occasionally high adult immigration. Contrary to expectations, summer and autumn survival rates (30 days) were not strongly depressed during low-flow periods, despite 25%-80% reductions in monthly discharge. Instead, YOY survival increased with lower minimum discharge and in response to small rain events that increased low-flow variability. Age-1+ fish showed the opposite pattern, with survival decreasing in response to increasing low-flow variability. Results from this population dynamics study of a small fish in a perennial river suggest that fluvial-dependent species can be resistant to extreme flow reductions through enhanced YOY recruitment and high survival

  2. The evolution of aryl hydrocarbon signaling proteins: diversity of ARNT isoforms among fish species.

    PubMed

    Powell, W H; Hahn, M E

    2000-01-01

    The aryl hydrocarbon receptor nuclear translocator (ARNT) mediates aryl hydrocarbon signaling and toxicity by dimerizing with the ligand-activated aryl hydrocarbon receptor (AHR), forming a complex that binds specific DNA elements and alters transcription of target genes. Two genes encode different forms of ARNT in rodents: ARNT1, which is widely expressed, and ARNT2, which exhibits a very restricted expression pattern. In an effort to characterize aryl hydrocarbon signaling mechanisms in fishes, we previously isolated an ARNT cDNA from Fundulus heteroclitus and discovered that this species expresses ARNT2 ubiquitously. This situation differs not only from mammals, but also from rainbow trout, which expresses a divergent ARNT gene that we hypothesized was peculiar to salmonids (rtARNTa/b). In this communication, we examine the ARNT sequences of multiple fish species, including a newly isolated cDNA from scup (Stenotomus chrysops). Our phylogenetic analysis demonstrates that zebrafish ARNT, like the Fundulus protein, is an ARNT2. Contrary to expectations, the scup ARNT is closely related to the rainbow trout protein, demonstrating that the existence of this ARNT isoform predates the divergence of salmonids from the other teleosts. Thus, different species of fish express distinct and highly conserved isoforms of ARNT. The number, type, and expression pattern of ARNT proteins may contribute to interspecies differences in aryl hydrocarbon toxicity, possibly through distinct interactions with additional PAS-family proteins.

  3. Endoparasite fauna of five Gadiformes fish species from the coast of Chile: host ecology versus phylogeny.

    PubMed

    Chávez, R A; González, M T; Oliva, M E; Valdivia, I M

    2012-03-01

    The aims of the present study were to compare, using multivariate analyses, the degree of similarity of the endoparasite fauna of five fish species belonging to the order Gadiformes: Merluccius gayi, Merluccius australis, Macruronus magellanicus (Gadoidei) and Micromesistius australis and Nezumia pulchella (Macrouroidei), from the southern and central Chilean coast, and to evaluate whether the composition of the endoparasite fauna was determined by phylogenetic or ecological relationships. We employed our database of Merluccius australis, M. magellanicus and Micromesistius australis, which was complemented with published information for M. magellanicus, Merluccius australis, Micromesistius australis, M. gayi and N. pulchella. A higher number of endoparasite species was recorded for Merluccius australis, Micromesistius australis and M. magellanicus, namely Anisakis sp. and Hepatoxylon trichiuri, which is the most prevalent parasite among these hosts. Aporocotyle wilhelmi and Hysterothylacium sp. were detected only in M. gayi, whereas Lepidapedon sp. was found exclusively in N. pulchella. These results suggest that fish ecology rather than host phylogeny was the most important factor for the determination of similarity in parasite composition. This result could be explained by the similar trophic patterns of hosts and by the predominance of generalist larval species among these fish parasite communities. PMID:21251342

  4. Rapidly shifting baselines in Yangtze fishing communities and local memory of extinct species.

    PubMed

    Turvey, Samuel T; Barrett, Leigh A; Yujiang, Hao; Lei, Zhang; Xinqiao, Zhang; Xianyan, Wang; Yadong, Huang; Kaiya, Zhou; Hart, Tom; Ding, Wang

    2010-06-01

    Local ecological knowledge can provide a unique source of data for conservation, especially in efforts to investigate the status of rare or possibly extinct species, but it is unlikely to remain constant over time. Loss of perspective about past ecological conditions caused by lack of communication between generations may create "shifting baseline syndrome," in which younger generations are less aware of local species diversity or abundance in the recent past. This phenomenon has been widely discussed, but has rarely been examined quantitatively. We present new evidence of shifting baselines in local perception of regional species declines and on the duration of "community memory" of extinct species on the basis of extensive interviews with fishers in communities across the middle-lower Yangtze basin. Many Yangtze species have expe