Denitrification in the Upper Mississippi River: Rates, controls, and contribution to nitrate flux

USGS Publications Warehouse

Richardson, W.B.; Strauss, E.A.; Bartsch, L.A.; Monroe, E.M.; Cavanaugh, J.C.; Vingum, L.; Soballe, D.M.

2004-01-01

We evaluated patterns of denitrification and factors effecting denitrification in the upper Mississippi River. Measurements were taken over 2 years, during which river discharge ranged from record flooding to base flow conditions. Over the period of study, average denitrification enzyme activity was highest in backwater lakes and lowest in the main channel. Throughout the study reach, highest denitrification enzyme activity occurred during fall and lowest occurred in winter. Rates during spring floods (2001) were only slightly higher than during the preceding winter. Mean unamended denitrification rates ranged from 0.02 (fall 2001 in backwaters) to 0.40 ??g N??cm -2??h-1 (spring 2001 in backwaters). Laboratory experiments showed that denitrification rates increased significantly with addition of NO3- regardless of sediment C content, while rates increased little with addition of labile C (glucose). Denitrification in this reach of the upper Mississippi River appears to be NO3- limited throughout the growing season and the delivery of NO 3- is strongly controlled by river discharge and hydrologie connectivity across the floodplain. We estimate that denitrification removes 6939 t N??year-1 or 6.9% of the total annual NO 3- input to the reach. Hydrologic connectivity and resultant NO3- delivery to high-C sediments is a critical determinant of reach-scale processing of N in this floodplain system.

Performance of heterotrophic partial denitrification under feast-famine condition of electron donor: a case study using acetate as external carbon source.

PubMed

Gong, Lingxiao; Huo, Mingxin; Yang, Qing; Li, Jun; Ma, Bin; Zhu, Rulong; Wang, Shuying; Peng, Yongzhen

2013-04-01

Recently, the combination of anammox and post heterotrophic partial denitrification (nitrate to nitrite) was increasingly popular to treat anammox effluent with excessive nitrate, whereas achieving nitrite accumulation stably was a major bottleneck for post-denitrification. This work focused on the performance of heterotrophic partial denitrification under acetate feast-famine condition. The results showed that readily biodegradable COD to nitrate (RBCOD/NO3(-)) ratio of 2.5 facilitated an ideal nitrite accumulation ratio (NAR) of 71.7% under complete nitrate reduction. When RBCOD/NO3(-) ratio was below 3.5, in terms of efficiency and nitrite accumulation, higher NAR obtained during exogenous denitrification identified that the external acetate depletion was the optimal ending point of denitrification, which could be indicated by pH accurately. The indication of pH realized NAR of 60% ideally under batch-flow mode with RBCOD/NO3(-) ratio of 2.7, which might promote the scale-up of partial denitrification. Furthemore, alkaline environment (pH 9.0-9.6) repressed N2O emission even during endogenous denitrification. Copyright © 2012 Elsevier Ltd. All rights reserved.

Denitrification-Efficiencies of Alternate Carbon Sources

DTIC Science & Technology

1984-07-01

carbon source evaluated, while sweet whey, corn steep liquor , acid whey and soluble potato solids followed in order of decreasing efficiency. Three of...denitrification and total organic carbon removal with ’I. sweet whey 11 3. Percent denitrification and total organic carbon removal with corn steep liquor ...and total organic carbon removal with hydrolyzed sludge 18 10. Percent denitrification and total organic carbon removal with fish stick 19 11

Denitrification in nitrate-rich streams: Application of N2:Ar and 15N-tracer methods in intact cores

USGS Publications Warehouse

Smith, Lesley K.; Voytek, M.A.; Böhlke, J.K.; Harvey, J.W.

2006-01-01

Rates of benthic denitrification were measured using two techniques, membrane inlet mass spectrometry (MIMS) and isotope ratio mass spectrometry (IRMS), applied to sediment cores from two NO3--rich streams draining agricultural land in the upper Mississippi River Basin. Denitrification was estimated simultaneously from measurements of N 2:Ar (MIMS) and 15N[N2] (IRMS) after the addition of low-level 15NO3- tracer ( 15N:N = 0.03-0.08) in stream water overlying intact sediment cores. Denitrification rates ranged from about 0 to 4400 lmol N??m -2??h-1 in Sugar Creek and from 0 to 1300 ??mol N??m-2??h-1 in Iroquois River, the latter of which possesses greater streamflow discharge and a more homogeneous streambed and water column. Within the uncertainties of the two techniques, there is good agreement between the MIMS and IRMS results, which indicates that the production of N2 by the coupled process of nitrification/denitrification was relatively unimportant and surface-water NO3- was the dominant source of NO3- for benthic denitrification in these streams. Variation in stream NO3- concentration (from about 20 ??mol/L during low discharge to 1000 ??mol/L during high discharge) was a significant control of benthic denitrification rates, judging from the more abundant MIMS data. The interpretation that NO3- concentration directly affects denitrification rate was corroborated by increased rates of denitrification in cores amended with NO 3-. Denitrification in Sugar Creek removed ???11% per day of the instream NO3- in late spring and removed roughly 15-20% in late summer. The fraction of NO3- removed in Iroquois River was less than that of Sugar Creek. Although benthic denitrification rates were relatively high during periods of high stream flow, when NO3 concentrations were also high, the increase in benthic denitrification could not compensate for the much larger increase in stream NO3- fluxes during high flow. Consequently, fractional NO3- losses were relatively low during high flow. ?? 2006 by the Ecological Society of America.

Biological nitrate removal from water and wastewater by solid-phase denitrification process.

PubMed

Wang, Jianlong; Chu, Libing

2016-11-01

Nitrate pollution in receiving waters has become a serious issue worldwide. Solid-phase denitrification process is an emerging technology, which has received increasing attention in recent years. It uses biodegradable polymers as both the carbon source and biofilm carrier for denitrifying microorganisms. A vast array of natural and synthetic biopolymers, including woodchips, sawdust, straw, cotton, maize cobs, seaweed, bark, polyhydroxyalkanoate (PHA), polycaprolactone (PCL), polybutylene succinate (PBS) and polylactic acid (PLA), have been widely used for denitrification due to their good performance, low cost and large available quantities. This paper presents an overview on the application of solid-phase denitrification in nitrate removal from drinking water, groundwater, aquaculture wastewater, the secondary effluent and wastewater with low C/N ratio. The types of solid carbon source, the influencing factors, the microbial community of biofilm attached on the biodegradable carriers, the potential adverse effect, and the cost of denitrification process are introduced and evaluated. Woodchips and polycaprolactone are the popular and competitive natural plant-like and synthetic biodegradable polymers used for denitrification, respectively. Most of the denitrifiers reported in solid-phase denitrification affiliated to the family Comamonadaceae in the class Betaproteobacteria. The members of genera Diaphorobacter, Acidovorax and Simplicispira were mostly reported. In future study, more attention should be paid to the simultaneous removal of nitrate and toxic organic contaminants such as pesticide and PPCPs by solid-phase denitrification, to the elucidation of the metabolic and regulatory relationship between decomposition of solid carbon source and denitrification, and to the post-treatment of the municipal secondary effluent. Solid-phase denitrification process is a promising technology for the removal of nitrate from water and wastewater. Copyright © 2016 Elsevier Inc. All rights reserved.

Using rates of oxygen and nitrate reduction to map the subsurface distribution of groundwater denitrification

NASA Astrophysics Data System (ADS)

Kolbe, T.; De Dreuzy, J. R.; Abbott, B. W.; Aquilina, L.; Babey, T.; Green, C. T.; Fleckenstein, J. H.; Labasque, T.; Laverman, A.; Marçais, J.; Peiffer, S.; Thomas, Z.; Pinay, G.

2017-12-01

Widespread fertilizer application over the last 70 years has caused serious ecological and socioeconomic problems in aquatic and estuarine ecosystems. When surplus nitrogen leaches as nitrate (a major groundwater pollutant) to the aquifer, complex flow dynamics and naturally occurring degradation processes control its transport. Under the conditions of depleted oxygen and abundant electron donors, microorganisms reduce NO3- to N2 (denitrification). Denitrification rates vary over orders of magnitude among sites within the same aquifer, complicating estimation of denitrification capacity at the catchment scale. Because it is impractical or impossible to access the subsurface to directly quantify denitrification rates, reactivity is often assumed to occur continuous along flowlines, potentially resulting in substantial over- or underestimation of denitrification. Here we investigated denitrification in an unconfined crystalline aquifer in western France using a combination of common tracers (chlorofluorocarbons, O2, NO3-, and N2) measured in 16 wells to inform a time-based modeling approach. We found that spatially variable denitrification rates arise from the intersection of nitrate rich water with reactive zones defined by the abundance of electron donors (primarily pyrite). Furthermore, based on observed reaction rates of the sequential reduction of oxygen and nitrate, we present a general framework to estimate the location and intensity of the reactive zone in aquifers. Accounting for the vertical distribution of reaction rates results in large differences in estimations of net denitrification rates that assume homogeneous reactivity. This new framework provides a tractable approach for quantifying catchment and regional groundwater denitrification rates that could be used to improve estimation of groundwater resilience to nitrate pollution and develop more realistic management strategies.

The Denitrification Characteristics and Microbial Community in the Cathode of an MFC with Aerobic Denitrification at High Temperatures.

PubMed

Zhao, Jianqiang; Wu, Jinna; Li, Xiaoling; Wang, Sha; Hu, Bo; Ding, Xiaoqian

2017-01-01

Microbial fuel cells (MFCs) have attracted much attention due to their ability to generate electricity while treating wastewater. The performance of a double-chamber MFC with simultaneous nitrification and denitrification (SND) in the cathode for treating synthetic high concentration ammonia wastewater was investigated at different dissolved oxygen (DO) concentrations and high temperatures. The results showed that electrode denitrification and traditional heterotrophic denitrification co-existed in the cathode chamber. Electrode denitrification by aerobic denitrification bacterium (ADB) is beneficial for achieving a higher voltage of the MFC at high DO concentrations (3.0-4.2 mg/L), while traditional heterotrophic denitrification is conducive to higher total nitrogen (TN) removal at low DO (0.5-1.0 mg/L) concentrations. Under high DO conditions, the nitrous oxide production and TN removal efficiency were higher with a 50 Ω external resistance than with a 100 Ω resistance, which demonstrated that electrode denitrification by ADB occurred in the cathode of the MFC. Sufficient electrons were inferred to be provided by the electrode to allow ADB survival at low carbon:nitrogen ratios (≤0.3). Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) results showed that increasing the DO resulted in a change of the predominant species from thermophilic autotrophic nitrifiers and facultative heterotrophic denitrifiers at low DO concentrations to thermophilic ADB at high DO concentrations. The predominant phylum changed from Firmicutes to Proteobacteria , and the predominant class changed from Bacilli to Alpha, Beta , and Gamma Proteobacteria .

Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas

NASA Astrophysics Data System (ADS)

Tomasek, Abigail; Kozarek, Jessica L.; Hondzo, Miki; Lurndahl, Nicole; Sadowsky, Michael J.; Wang, Ping; Staley, Christopher

2017-08-01

Intensive agriculture in the Midwestern United States contributes to excess nitrogen in surface water and groundwater, negatively affecting human health and aquatic ecosystems. Complete denitrification removes reactive nitrogen from aquatic environments and releases inert dinitrogen gas. We examined denitrification rates and the abundances of denitrifying genes and total bacteria at three sites in an agricultural watershed and in an experimental stream in Minnesota. Sampling was conducted along transects with a gradient from always inundated (in-channel), to periodically inundated, to noninundated conditions to determine how denitrification rates and gene abundances varied from channels to riparian areas with different inundation histories. Results indicate a coupling between environmental parameters, gene abundances, and denitrification rates at the in-channel locations, and limited to no coupling at the periodically inundated and noninundated locations, respectively. Nutrient-amended potential denitrification rates for the in-channel locations were significantly correlated (α = 0.05) with five of six measured denitrifying gene abundances, whereas the periodically inundated and noninundated locations were each only significantly correlated with the abundance of one denitrifying gene. These results suggest that DNA-based analysis of denitrifying gene abundances alone cannot predict functional responses (denitrification potential), especially in studies with varying hydrologic regimes. A scaling analysis was performed to develop a predictive functional relationship relating environmental parameters to denitrification rates for in-channel locations. This method could be applied to other geographic and climatic regions to predict the occurrence of denitrification hot spots.

Modeling nitrous oxide production and reduction in soil through explicit representation of denitrification enzyme kinetics.

PubMed

Zheng, Jianqiu; Doskey, Paul V

2015-02-17

An enzyme-explicit denitrification model with representations for pre- and de novo synthesized enzymes was developed to improve predictions of nitrous oxide (N2O) accumulations in soil and emissions from the surface. The metabolic model of denitrification is based on dual-substrate utilization and Monod growth kinetics. Enzyme synthesis/activation was incorporated into each sequential reduction step of denitrification to regulate dynamics of the denitrifier population and the active enzyme pool, which controlled the rate function. Parameterizations were developed from observations of the dynamics of N2O production and reduction in soil incubation experiments. The model successfully reproduced the dynamics of N2O and N2 accumulation in the incubations and revealed an important regulatory effect of denitrification enzyme kinetics on the accumulation of denitrification products. Pre-synthesized denitrification enzymes contributed 20, 13, 43, and 62% of N2O that accumulated in 48 h incubations of soil collected from depths of 0-5, 5-10, 10-15, and 15-25 cm, respectively. An enzyme activity function (E) was defined to estimate the relative concentration of active enzymes and variation in response to environmental conditions. The value of E allows for activities of pre-synthesized denitrification enzymes to be differentiated from de novo synthesized enzymes. Incorporating explicit representations of denitrification enzyme kinetics into biogeochemical models is a promising approach for accurately simulating dynamics of the production and reduction of N2O in soils.

Sedimentary denitrification: Isotope fractionation and its impact on water column nitrate isotopes

NASA Astrophysics Data System (ADS)

Dähnke, K.; Thamdrup, B.

2012-04-01

The global marine nitrogen cycle is constrained by one major source and two processes that act as nitrogen sinks: nitrogen fixation on the one side and denitrification or anammox on the other. These processes with their respective isotope effecst set the marine nitrate 15N-isotope value to a relatively constant average of 5 per mil. This value can be used to better assess the magnitude of these source and sink terms, but the underlying assumption at present is that sedimentary denitrification, a process responsible for approximately one third of global nitrogen removal, has little to no isotope effect on the water column. We tested this hypothesis in sediment incubations, measuring net denitrification and nitrogen and oxygen stable isotope fractionation in surface sediments from the coastal Baltic Sea (Boknis Eck, Northern Germany). We found tremendously high denitrification rates, and regardless of current paradigms assuming little fractionation during sediment denitrification, we measured fractionation factors of 19 per mil for nitrogen and 11 per mil for oxygen in nitrate. These results potentially challenge the current view of fractionation during sedimentary denitrification and imply that nitrogen budget calculation may need to consider this variability. Furthermore, the ratio of fractionation factors for nitrogen and oxygen is distinct from the 1 : 1 ratio otherwise found in marine systems, and suggests that isotope kinetics of sedimentary denitrification might be entirely different from water column denitrification. Acknowledgements: This work was funded by the German Research Foundation (DFG) and in parts by the Danish National Research Foundation.

Human land uses enhance sediment denitrification and N2O production in Yangtze lakes primarily by influencing lake water quality

NASA Astrophysics Data System (ADS)

Liu, W.; Yao, L.; Wang, Z.; Xiong, Z.; Liu, G.

2015-10-01

Sediment denitrification in lakes alleviates the effects of eutrophication through the removal of nitrogen to the atmosphere as N2O and N2. However, N2O contributes notably to the greenhouse effect and global warming. Human land uses (e.g. agricultural and urban areas) strongly affect lake water quality and sediment characteristics, which, in turn, may regulate lake sediment denitrification and N2O production. In this study, we investigated sediment denitrification and N2O production and their relationships to within-lake variables and watershed land uses in 20 lakes from the Yangtze River basin in China. The results indicated that both lake water quality and sediment characteristics were significantly influenced by watershed land uses. N2O production rates increased with increasing background denitrification rates. Background denitrification and N2O production rates were positively related to water nitrogen concentrations but were not significantly correlated with sediment characteristics and plant community structure. A significant positive relationship was observed between background denitrification rate and percentage of human-dominated land uses (HDL) in watersheds. Structural equation modelling revealed that the indirect effects of HDL on sediment denitrification and N2O production in Yangtze lakes were mediated primarily through lake water quality. Our findings also suggest that although sediments in Yangtze lakes can remove large quantities of nitrogen through denitrification, they may also be an important source of N2O, especially in lakes with high nitrogen content.

Linkages between denitrification and dissolved organicmatter quality, Boulder Creek watershed, Colorado

USGS Publications Warehouse

Barnes, Rebecca T.; Smith, Richard L.; Aiken, George R.

2012-01-01

Dissolved organic matter (DOM) fuels the majority of in-stream microbial processes, including the removal of nitrate via denitrification. However, little is known about how the chemical composition of DOM influences denitrification rates. Water and sediment samples were collected across an ecosystem gradient, spanning the alpine to plains, in central Colorado to determine whether the chemical composition of DOM was related to denitrification rates. Laboratory bioassays measured denitrification potentials using the acetylene block technique and carbon mineralization via aerobic bioassays, while organic matter characteristics were evaluated using spectroscopic and fractionation methods. Denitrification potentials under ambient and elevated nitrate concentrations were strongly correlated with aerobic respiration rates and the percent mineralized carbon, suggesting that information about the aerobic metabolism of a system can provide valuable insight regarding the ability of the system to additionally reduce nitrate. Multiple linear regressions (MLR) revealed that under elevated nitrate concentrations denitrification potentials were positively related to the presence of protein-like fluorophores and negatively related to more aromatic and oxidized fractions of the DOM pool. Using MLR, the chemical composition of DOM, carbon, and nitrate concentrations explained 70% and 78% of the observed variability in denitrification potential under elevated and ambient nitrate conditions, respectively. Thus, it seems likely that DOM optical properties could help to improve predictions of nitrate removal in the environment. Finally, fluorescence measurements revealed that bacteria used both protein and humic-like organic molecules during denitrification providing further evidence that larger, more aromatic molecules are not necessarily recalcitrant in the environment.

Denitrification of the polar winter stratosphere - Implications of SAM II cloud formation temperatures

NASA Technical Reports Server (NTRS)

Hamill, Patrick; Toon, O. B.

1990-01-01

The SAM II extinction profiles and the associated temperature profiles are used to determine the amount of denitrification of the winter polar stratospheres. Clear evidence of the denitrification process in the Antarctic data is seen. There are indications in the Arctic data that denitrification mechanisms may be at work there also. At the latitudes observed by the SAM II satellite system, denitrification begins before the formation of extensive ice clouds and may be due to sedimentation of nitric acid particles. However, the possibility of dinitrification by type II PSCs at latitudes not observed by SAM II cannot be excluded.

Seasonal effects of the zebra mussel (Dreissena polymorpha) on sediment denitrification rates in Pool 8 of the Upper Mississippi River

USGS Publications Warehouse

Bruesewitz, Denise A.; Tank, Jennifer L.; Bernot, Melody J.; Richardson, William B.; Strauss, Eric A.

2006-01-01

Zebra mussels (Dreissena polymorpha) have altered the structure of invaded ecosystems and exhibit characteristics that suggest they may influence ecosystem processes such as nitrogen (N) cycling. We measured denitrification rates seasonally on sediments underlying zebra mussel beds collected from the impounded zone of Navigation Pool 8 of the Upper Mississippi River. Denitrification assays were amended with nutrients to characterize variation in nutrient limitation of denitrification in the presence or absence of zebra mussels. Denitrification rates at zebra mussel sites were high relative to sites without zebra mussels in February 2004 (repeated measures analysis of variance (RM ANOVA), p = 0.005), potentially because of high NO3-N variability from nitrification of high NH4+ zebra mussel waste. Denitrification rates were highest in June 2003 (RM ANOVA, p 3-N concentrations during the study (linear regression, R2 = 0.72, p p ≤ 0.01). Examining how zebra mussels influence denitrification rates will aid in developing a more complete understanding of the impact of zebra mussels and more effective management strategies of eutrophic waters.

Influence of environmental factors on denitrification in sediment contaminated with JP-4 jet fuel

USGS Publications Warehouse

Bradley, Paul M.; Aelion, C. Marjorie; Vroblesky, Don A.

1992-01-01

In 1975, the loss of approximately 83,000 gallons of JP-4 grade jet fuel resulted in contamination of the shallow aquifer near North Charleston, South Carolina. To identify those factors likely to influence microbial activity under denitrifying conditions, we examined the fate of amended NO3, the effect of pH, NO3, and PO4 on denitrification, and the variability of denitrification in sediments collected at the site. Denitrification (N2O-N production) accounted for 98% of the depletion of NO3-N under anaerobic conditions. Both carbon mineralization and denitrification rates increased asymptotically with increasing NO3 to a maximum at approximately 1 mM NO3. Addition of up to 1 mM PO4 did not significantly increase N2O and CO2 production. Denitrification rates were at least 38% lower at pH = 4 than observed at pH = 7. Comparison of samples with differing degrees of hydrocarbon contamination indicated that at least a tenfold variation in sediment denitrification occurs at the North Charleston site.

Seasonal variation in denitrification and dissimilatory nitrate reduction to ammonia process rates and corresponding key functional genes along an estuarine nitrate gradient

PubMed Central

Smith, Cindy J.; Dong, Liang F.; Wilson, John; Stott, Andrew; Osborn, A. Mark; Nedwell, David B.

2015-01-01

This research investigated spatial-temporal variation in benthic bacterial community structure, rates of denitrification and dissimilatory nitrate reduction to ammonium (DNRA) processes and abundances of corresponding genes and transcripts at three sites—the estuary-head, mid-estuary and the estuary mouth (EM) along the nitrate gradient of the Colne estuary over an annual cycle. Denitrification rates declined down the estuary, while DNRA rates were higher at the estuary head and middle than the EM. In four out of the six 2-monthly time-points, rates of DNRA were greater than denitrification at each site. Abundance of gene markers for nitrate-reduction (nitrate reductase narG and napA), denitrification (nitrite reductase nirS) and DNRA (DNRA nitrite reductase nrfA) declined along the estuary with significant relationships between denitrification and nirS abundance, and DNRA and nrfA abundance. Spatially, rates of denitrification, DNRA and corresponding functional gene abundances decreased along the estuary. However, temporal correlations between rate processes and functional gene and transcript abundances were not observed. PMID:26082763

Mathematical modeling of nitrous oxide production in an anaerobic/oxic/anoxic process.

PubMed

Ding, Xiaoqian; Zhao, Jianqiang; Hu, Bo; Chen, Ying; Ge, Guanghuan; Li, Xiaoling; Wang, Sha; Gao, Kun; Tian, Xiaolei

2016-12-01

This study incorporates three currently known nitrous oxide (N 2 O) production pathways: ammonium-oxidizing bacteria (AOB) denitrification, incomplete hydroxylamine (NH 2 OH) oxidation, and heterotrophic denitrification on intracellular polymers, into a mathematical model to describe N 2 O production in an anaerobic/oxic/anoxic (AOA) process for the first time. The developed model was calibrated and validated by four experimental cases, then evaluated by two independent anaerobic/aerobic (AO) studies from literature. The modeling results displayed good agreement with the measured data. N 2 O was primarily generated in the aerobic stage by AOB denitrification (67.84-81.64%) in the AOA system. Smaller amounts of N 2 O were produced via incomplete NH 2 OH oxidation (15.61-32.17%) and heterotrophic denitrification on intracellular polymers (0-12.47%). The high nitrite inhibition on N 2 O reductase led to the increased N 2 O accumulation in heterotrophic denitrification on intracellular polymers. The new model was capable of modeling nitrification-denitrification dynamics and heterotrophic denitrification on intracellular polymers in the AOA system. Copyright © 2016 Elsevier Ltd. All rights reserved.

The mechanisms governing low denitrification capacity and high nitrogen oxide gas emissions in subtropical forest soils in China

NASA Astrophysics Data System (ADS)

Zhang, Jinbo; Yu, Yongjie; Zhu, Tongbin; Cai, Zucong

2014-08-01

Previous studies have demonstrated that denitrification rates are low in subtropical forest soils. However, the mechanisms governing this process are not well known. This study seeks to identify the mechanisms responsible for the low denitrification capacity and high nitrogen oxide gas ratio in subtropical forest soils in China. The denitrification capacity and nitric oxide (NO), nitrous oxide (N2O), and dinitrogen (N2) emission rates were measured using the acetylene inhibition method under conditions of added nitrate and anoxia. The abundance of nitrate reductase (narG), nitrite reductase (nirK), nitric oxide reductase (cnorB), and nitrous oxide reductase (nosZ) was measured using real-time, quantitative polymerase chain reaction, and sequencing of the nirK and norB products was performed to analyze the population structure of denitrifying bacteria. These results showed that the denitrification capacity in subtropical forest soils was lower than in temperate forest soils (p < 0.05). Multiple regression analysis showed that redox potential at the start of incubation (Ehi), rather than soil pH or soil organic C, was the key soil variable influencing denitrification, and Ehi alone could explain 68% of the variations in denitrification capacity. The high Ehi in subtropical soils led to a low abundance of nirK and significant differences in the population structure of denitrifying bacteria between subtropical and temperate soils. Therefore, Ehi was responsible for the low denitrification capacity in subtropical forest soils. The ratio of NO to total denitrification gas products (p < 0.01) and the ratio of NO and N2O to total denitrification gas products (p < 0.05) were significantly higher in subtropical forest soils than in temperate forest soils, while the reverse trend was observed for the ratio of N2 to total denitrification gas products (p < 0.05). A high Ehi reduced the specific reduction activity of each nosZ copy and, in turn, resulted in a large ratio of NO and N2O to total denitrification gas products in subtropical soils. Thus, NO and N2O, but not N2, were the dominant denitrification gas products, accounting for 80%, even under the highly anaerobic conditions in subtropical forest soils and despite low denitrification capacity. These results were significant for understanding the "Hole in the Pipe" model and NO and N2O gases emission in subtropical forest soils. Despite the fact that the nitrogen flowing through the pipe (denitrification capacity) was low, the large holes in the pipe resulted in a large quantity of NO and N2O gases leaking out. This leakage may be a potential mechanism for the high levels of NO and N2O gas emission in subtropical forest soils and could partly explain why NO and N2O emissions are generally high in subtropical and tropical soils.

Using soil isotopes as an indicator of denitrification in weetlands

EPA Science Inventory

Denitrification is an important ecosystem service provided by wetlands, which results in removal of excess nitrogen that can threaten aquatic systems. Unfortunately, direct measurement of denitrification has traditionally been expensive, time intensive, and difficult. However, ...

Influence of denitrification reactor retention time distribution (RTD) on dissolved oxygen control and nitrogen removal efficiency.

PubMed

Raboni, Massimo; Gavasci, Renato; Viotti, Paolo

2015-01-01

Low concentrations of dissolved oxygen (DO) are usually found in biological anoxic pre-denitrification reactors, causing a reduction in nitrogen removal efficiency. Therefore, the reduction of DO in such reactors is fundamental for achieving good nutrient removal. The article shows the results of an experimental study carried out to evaluate the effect of the anoxic reactor hydrodynamic model on both residual DO concentration and nitrogen removal efficiency. In particular, two hydrodynamic models were considered: the single completely mixed reactor and a series of four reactors that resemble plug-flow behaviour. The latter prove to be more effective in oxygen consumption, allowing a lower residual DO concentration than the former. The series of reactors also achieves better specific denitrification rates and higher denitrification efficiency. Moreover, the denitrification food to microrganism (F:M) ratio (F:MDEN) demonstrates a relevant synergic action in both controlling residual DO and improving the denitrification performance.

Validating soil denitrification models based on laboratory N_{2} and N_{2}O fluxes and underlying processes derived by stable isotope approaches

NASA Astrophysics Data System (ADS)

Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Müller, Carsten; Müller, Christoph; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole

2016-04-01

Robust denitrification data suitable to validate soil N2 fluxes in denitrification models are scarce due to methodical limitations and the extreme spatio-temporal heterogeneity of denitrification in soils. Numerical models have become essential tools to predict denitrification at different scales. Model performance could either be tested for total gaseous flux (NO + N2O + N2), individual denitrification products (e.g. N2O and/or NO) or for the effect of denitrification factors (e.g. C-availability, respiration, diffusivity, anaerobic volume, etc.). While there are numerous examples for validating N2O fluxes, there are neither robust field data of N2 fluxes nor sufficiently resolved measurements of control factors used as state variables in the models. To the best of our knowledge there has been only one published validation of modelled soil N2 flux by now, using a laboratory data set to validate an ecosystem model. Hence there is a need for validation data at both, the mesocosm and the field scale including validation of individual denitrification controls. Here we present the concept for collecting model validation data which is be part of the DFG-research unit "Denitrification in Agricultural Soils: Integrated Control and Modelling at Various Scales (DASIM)" starting this year. We will use novel approaches including analysis of stable isotopes, microbial communities, pores structure and organic matter fractions to provide denitrification data sets comprising as much detail on activity and regulation as possible as a basis to validate existing and calibrate new denitrification models that are applied and/or developed by DASIM subprojects. The basic idea is to simulate "field-like" conditions as far as possible in an automated mesocosm system without plants in order to mimic processes in the soil parts not significantly influenced by the rhizosphere (rhizosphere soils are studied by other DASIM projects). Hence, to allow model testing in a wide range of conditions, denitrification control factors will be varied in the initial settings (pore volume, plant residues, mineral N, pH) but also over time, where moisture, temperature, and mineral N will be manipulated according to typical time patterns in the field. This will be realized by including precipitation events, fertilization (via irrigation), drainage (via water potential) and temperature in the course of incubations. Moreover, oxygen concentration will be varied to simulate anaerobic events. These data will be used to calibrate the newly to develop DASIM models as well as existing denitrification models. One goal of DASIM is to create a public data base as a joint basis for model testing by denitrification modellers. Therefore we invite contributions of suitable data-sets from the scientific community. Requirements will be briefly outlined.

3-D microphysical model studies of Arctic denitrification: comparison with observations

NASA Astrophysics Data System (ADS)

Davies, S.; Mann, G. W.; Carslaw, K. S.; Chipperfield, M. P.; Kettleborough, J. A.; Santee, M. L.; Oelhaf, H.; Wetzel, G.; Sasano, Y.; Sugita, T.

2005-11-01

Simulations of Arctic denitrification using a 3-D chemistry-microphysics transport model are compared with observations for the winters 1994/95, 1996/97 and 1999/2000. The model of Denitrification by Lagrangian Particle Sedimentation (DLAPSE) couples the full chemical scheme of the 3-D chemical transport model, SLIMCAT, with a nitric acid trihydrate (NAT) growth and sedimentation scheme. We use observations from the Microwave Limb Sounder (MLS) and Improved Limb Atmospheric Sounder (ILAS) satellite instruments, the balloon-borne Michelsen Interferometer for Passive Atmospheric Sounding (MIPAS-B), and the in situ NOy instrument on-board the ER-2. As well as directly comparing model results with observations, we also assess the extent to which these observations are able to validate the modelling approach taken. For instance, in 1999/2000 the model captures the temporal development of denitrification observed by the ER-2 from late January into March. However, in this winter the vortex was already highly denitrified by late January so the observations do not provide a strong constraint on the modelled rate of denitrification. The model also reproduces the MLS observations of denitrification in early February 2000. In 1996/97 the model captures the timing and magnitude of denitrification as observed by ILAS, although the lack of observations north of ~67° N in the beginning of February make it difficult to constrain the actual timing of onset. The comparison for this winter does not support previous conclusions that denitrification must be caused by an ice-mediated process. In 1994/95 the model notably underestimates the magnitude of denitrification observed during a single balloon flight of the MIPAS-B instrument. Agreement between model and MLS HNO3 at 68 hPa in mid-February 1995 is significantly better. Sensitivity tests show that a 1.5 K overall decrease in vortex temperatures, or a factor 4 increase in assumed NAT nucleation rates, produce the best statistical fit to MLS observations. Both adjustments would be required to bring the model into agreement with the MIPAS-B observations. The agreement between the model and observations suggests that a NAT-only denitrification scheme (without ice), which was discounted by previous studies, must now be considered as one mechanism for the observed Arctic denitrification. The timing of onset and the rate of denitrification remain poorly constrained by the available observations.

3-D microphysical model studies of Arctic denitrification: comparison with observations

NASA Astrophysics Data System (ADS)

Davies, S.; Mann, G. W.; Carslaw, K. S.; Chipperfield, M. P.; Kettleborough, J. A.; Santee, M. L.; Oelhaf, H.; Wetzel, G.; Sasano, Y.; Sugita, T.

2005-01-01

Simulations of Arctic denitrification using a 3-D chemistry-microphysics transport model are compared with observations for the winters 1994/1995, 1996/1997 and 1999/2000. The model of Denitrification by Lagrangian Particle Sedimentation (DLAPSE) couples the full chemical scheme of the 3-D chemical transport model, SLIMCAT, with a nitric acid trihydrate (NAT) growth and sedimentation scheme. We use observations from the Microwave Limb Sounder (MLS) and Improved Limb Atmospheric Sounder (ILAS) satellite instruments, the balloon-borne Michelsen Interferometer for Passive Atmospheric Sounding (MIPAS-B), and the in situ NOy instrument on-board the ER-2. As well as directly comparing model results with observations, we also assess the extent to which these observations are able to validate the modelling approach taken. For instance, in 1999/2000 the model captures the temporal development of denitrification observed by the ER-2 from late January into March. However, in this winter the vortex was already highly denitrified by late January so the observations do not provide a strong constraint on the modelled rate of denitrification. The model also reproduces the MLS observations of denitrification in early February 2000. In 1996/1997 the model captures the timing and magnitude of denitrification as observed by ILAS, although the lack of observations north of ~67° N make it difficult to constrain the actual timing of onset. The comparison for this winter does not support previous conclusions that denitrification must be caused by an ice-mediated process. In 1994/1995 the model notably underestimates the magnitude of denitrification observed during a single balloon flight of the MIPAS-B instrument. Agreement between model and MLS HNO3 at 68 hPa in mid-February 1995 was significantly better. Sensitivity tests show that a 1.5 K overall decrease in vortex temperatures or a factor 4 increase in assumed NAT nucleation rates produce the best statistical fit to MLS observations. Both adjustments would be required to bring the model into agreement with the MIPAS-B observations. The agreement between the model and observations suggests that a NAT-only denitrification scheme (without ice), which was discounted by previous studies, must now be considered as one mechanism for the observed Arctic denitrification. The timing of onset and the rate of denitrification remain poorly constrained by the available observations.

Reach-scale isotope tracer experiment to quantify denitrification and related processes in a nitrate-rich stream, midcontinent United States

USGS Publications Warehouse

Böhlke, J.K.; Harvey, J.W.; Voytek, M.A.

2004-01-01

We conducted an in-stream tracer experiment with Br and 15N-enriched NO3- to determine the rates of denitrification and related processes in a gaining NO3- -rich stream in an agricultural watershed in the upper Mississippi basin in September 2001. We determined reach-averaged rates of N fluxes and reactions from isotopic analyses of NO3-, NO2-, N2, and suspended particulate N in conjunction with other data in a 1.2-km reach by using a forward time-stepping numerical simulation that included groundwater discharge, denitrification, nitrification, assimilation, and air-water gas exchange with changing temperature. Denitrification was indicated by a systematic downstream increase in the d15N values of dissolved N2. The reach-averaged rate of denitrification of surface-water NO3- indicated by the isotope tracer was approximately 120 ± 20 µmol m-2 h-1 (corresponding to zero- and first-order rate constants of 0.63 µmol L-1 h-1 and 0.009 h-1, respectively). The overall rate of NO3- loss by processes other than denitrification (between 0 and about 200 µmol m-2 h-1) probably was less than the denitrification rate but had a large relative uncertainty because the NO3- load was large and was increasing through the reach. The rates of denitrification and other losses would have been sufficient to reduce the stream NO3- load substantially in the absence of NO3- sources, but the losses were more than offset by nitrification and groundwater NO3- inputs at a combined rate of about 500-700 µmol m-2 h-1. Despite the importance of denitrification, the overall mass fluxes of N2 were dominated by discharge of denitrified groundwater and air-water gas exchange in response to changing temperature, whereas the flux of N2 attributed to denitrification was relatively small. The in-stream isotope tracer experiment provided a sensitive direct reach-scale measurement of denitrification and related processes in a NO3- -rich stream where other mass-balance methods were not suitable because of insufficient sensitivity or offsetting sources and sinks. Despite the increasing NO3- load in the experimental reach, the isotope tracer data indicate that denitrification was a substantial permanent sink for N leaving this agricultural watershed during low-flow conditions.

Does denitrification occur within porous carbonate sand grains?

NASA Astrophysics Data System (ADS)

Miall Cook, Perran Louis; Kessler, Adam John; Eyre, Bradley David

2017-09-01

Permeable carbonate sands form a major habitat type on coral reefs and play a major role in organic matter recycling. Nitrogen cycling within these sediments is likely to play a major role in coral reef productivity, yet it remains poorly studied. Here, we used flow-through reactors and stirred reactors to quantify potential rates of denitrification and the dependence of denitrification on oxygen concentrations in permeable carbonate sands at three sites on Heron Island, Australia. Our results showed that potential rates of denitrification fell within the range of 2-28 µmol L-1 sediment h-1 and were very low compared to oxygen consumption rates, consistent with previous studies of silicate sands. Denitrification was observed to commence at porewater oxygen concentrations as high as 50 µM in stirred reactor experiments on the coarse sediment fraction (2-10 mm) and at oxygen concentrations of 10-20 µM in flow-through and stirred reactor experiments at a site with a median sediment grain size of 0.9 mm. No denitrification was detected in sediments under oxic conditions from another site with finer sediment (median grain size: 0.7 mm). We interpret these results as confirmation that denitrification may occur within anoxic microniches present within porous carbonate sand grains. The occurrence of such microniches has the potential to enhance denitrification rates within carbonate sediments; however further work is required to elucidate the extent and ecological significance of this effect.

Factors controlling denitrification rates of tidal mudflats and fringing salt marshes in south-west England

NASA Astrophysics Data System (ADS)

Koch, M. S.; Maltby, E.; Oliver, G. A.; Bakker, S. A.

1992-05-01

Denitrification rates were determined utilizing the acetylene blockage technique at three sites: upper mudflat, lower mudflat, and Halimione portulacoides marsh on the fringing wetlands of the Torridge River Estuary in South-west England. Denitrification rates were calculated from nitrous oxide (N 2O) production each month for 1 year with intact sediment cores extracted at low tide (0-5 cm). In the lower and upper mudflat sites denitrification rates were low ranging from 0·52 to 5·78 μmol and 1·28 to 4·36 μmol N 2 m -2 h -1, respectively. Denitrification rates in marsh sediments were consistently higher than those of the mudflat ranging from 2·51 to 59·00 μmol N 2 m -2 h -1. Amending river water to sediment cores stimulated lower and upper mudflat denitrification rates approximately 10-fold up to 106·39 and 96·73 μmol N 2 m -2 h -1, respectively. In marsh sediments, a two-fold increase in denitrification was found with river water amended resulting in a maximum rate of 114·80 μmol N 2 m -2 h -1. During the winter months, when riverine NO 3-N levels were at a maximum (2·47 to 2·93 mg l -1), denitrification rates were highest (75·24 to 114·99 μmol N 2 m -2 h -1) and conversely, during the summer both NO 3-N concentrations (1·0 to 1·70 mg l -1) and denitrification (0·95 to 37·38 μmol N 2 m -2 h -1) rates were at a minimum. Mudflat sediment redox potentials (Eh), within the theoretical range of NO 3-1 instability, were limited to the upper 5 mm, thus maximum denitrification rates may be restricted to the sediment surface. When calculating annual denitrification rates in tidal estuaries several factors should be considered including: seasonal NO 3-1 concentrations in tidal water, tidal flooding duration and amplitude, and the depth of the aerobic/anaerobic zone of the sediment.

Implication of using different carbon sources for denitrification in wastewater treatments.

PubMed

Cherchi, Carla; Onnis-Hayden, Annalisa; El-Shawabkeh, Ibrahim; Gu, April Z

2009-08-01

Application of external carbon sources for denitrification becomes necessary for wastewater treatment plants that have to meet very stringent effluent nitrogen limits (e.g., 3 to 5 mgTN/L). In this study, we evaluated and compared three carbon sources--MicroC (Environmental Operating Solutions, Bourne, Massachusetts), methanol, and acetate-in terms of their denitrification rates and kinetics, effect on overall nitrogen removal performance, and microbial community structure of carbon-specific denitrifying enrichments. Denitrification rates and kinetics were determined with both acclimated and non-acclimated biomass, obtained from laboratory-scale sequencing batch reactor systems or full-scale plants. The results demonstrate the feasibility of the use of MicroC for denitrification processes, with maximum denitrification rates (k(dmax)) of 6.4 mgN/gVSSh and an observed yield of 0.36 mgVSS/mgCOD. Comparable maximum nitrate uptake rates were found with methanol, while acetate showed a maximum denitrification rate nearly twice as high as the others. The maximum growth rates measured at 20 degrees C for MicroC and methanol were 3.7 and 1.2 day(-1), respectively. The implications resulting from the differences in the denitrification rates and kinetics of different carbon sources on the full-scale nitrogen removal performance, under various configurations and operational conditions, were assessed using Biowin (EnviroSim Associates, Ltd., Flamborough, Ontario, Canada) simulations for both pre- and post-denitrification systems. Examination of microbial population structures using Automated Ribosomal Intergenic Spacer Analysis (ARISA) throughout the study period showed dynamic temporal changes and distinct microbial community structures of different carbon-specific denitrifying cultures. The ability of a specific carbon-acclimated denitrifying population to instantly use other carbon source also was investigated, and the chemical-structure-associated behavior patterns observed suggested that the complex biochemical pathways/enzymes involved in the denitrification process depended on the carbon sources used.

Physicochemical properties influencing denitrification rate and microbial activity in denitrification bioreactors

NASA Astrophysics Data System (ADS)

Schmidt, C. A.

2012-12-01

The use of N-based fertilizer will need to increase to meet future demands, yet existing applications have been implicated as the main source of coastal eutrophication and hypoxic zones. Producing sufficient crops to feed a growing planet will require efficient production in combination with sustainable treatment solutions. The long-term success of denitrification bioreactors to effectively remove nitrate (NO¬3), indicates this technology is a feasible treatment option. Assessing and quantifying the media properties that affect NO¬3 removal rate and microbial activity can improve predictions on bioreactor performance. It was hypothesized that denitrification rates and microbial biomass would be correlated with total C, NO¬3 concentration, metrics of organic matter quality, media surface area and laboratory measures of potential denitrification rate. NO¬3 removal rates and microbial biomass were evaluated in mesocosms filled with different wood treatments and the unique influence of these predictor variables was determined using a multiple linear regression analysis. NO3 reduction rates were independent of NO¬3 concentration indicating zero order reaction kinetics. Temperature was strongly correlated with denitrification rate (r2=0.87; Q10=4.7), indicating the variability of bioreactor performance in differing climates. Fiber quality, and media surface area were strong (R>0.50), unique predictors of rates and microbial biomass, although C:N ratio and potential denitrification rate did not predict actual denitrification rate or microbial biomass. Utilizing a stepwise multiple linear regression, indicates that the denitrification rate can be effectively (r2=0.56;p<0.0001) predicted if the groundwater temperature, neutral detergent fiber and surface area alone are quantified. These results will assist with the widespread implementation of denitrification bioreactors to achieve significant N load reductions in large watersheds. The nitrate reduction rate as a function of groundwater temperature for all treatments. Correlations between nitrate reduction rate and properties of carbon media;

Simultaneous removal of SO2 and NOx from flue gas by wet scrubbing using a urea solution.

PubMed

Li, Ge; Wang, Baodong; Xu, Wayne Qiang; Li, Yonglong; Han, Yifan; Sun, Qi

2018-03-27

Nitrogen oxides (NO x ) and sulfur dioxide (SO 2 ) are major air pollutants, so simultaneously removing them from gases emitted during fossil fuel combustion in stationary systems is important. Wet denitrification using urea is used for a wide range of systems. Additives have strong effects on wet denitrification using urea, and different mechanisms are involved and different effects found using different additives. In this study, the effects of different additives, initial urea concentrations, reaction temperatures, initial pH values, gas flow rates, and reaction times on the simultaneous desulfurization and denitrification efficiencies achieved using wet denitrification using urea were studied in single factor experiment. The optimum reaction conditions for desulfurization and denitrification were found. Desulfurization and denitrification efficiencies of 97.5% and 96.3%, respectively, were achieved at a KMnO 4 concentration 5 mmol/L, a reaction temperature of 70°C, initial urea solution pH 8, a urea concentration of 9%, and a gas flow rate of 40 L/h. The concentrations of the desulfurization and denitrification reaction products in the solution were determined. NO x was mainly transformed into N 2 , and the [Formula: see text] and [Formula: see text] concentrations in the solution became very low. The reactions involved in SO 2 and NO x removal using urea were analyzed from the thermodynamic viewpoint. Increasing the temperature was not conducive to the reactions but increased the rate constant, so an optimum temperature was determined. The simultaneous desulfurization and denitrification kinetics were calculated. The urea consumption and [Formula: see text], [Formula: see text], and [Formula: see text] generation reactions were all zero order. The [Formula: see text] generation rate was greater than the [Formula: see text] generation rate. The simultaneous desulfurization and denitrification process and mechanism were studied. The results provide reference data for performing flue gas desulfurization and denitrification in factories.

Relative importance of plant uptake and plant associated denitrification for removal of nitrogen from mine drainage in sub-arctic wetlands.

PubMed

Hallin, Sara; Hellman, Maria; Choudhury, Maidul I; Ecke, Frauke

2015-11-15

Reactive nitrogen (N) species released from undetonated ammonium-nitrate based explosives used in mining or other blasting operations are an emerging environmental problem. Wetlands are frequently used to treat N-contaminated water in temperate climate, but knowledge on plant-microbial interactions and treatment potential in sub-arctic wetlands is limited. Here, we compare the relative importance of plant uptake and denitrification among five plant species commonly occurring in sub-arctic wetlands for removal of N in nitrate-rich mine drainage in northern Sweden. Nitrogen uptake and plant associated potential denitrification activity and genetic potential for denitrification based on quantitative PCR of the denitrification genes nirS, nirK, nosZI and nosZII were determined in plants growing both in situ and cultivated in a growth chamber. The growth chamber and in situ studies generated similar results, suggesting high relevance and applicability of results from growth chamber experiments. We identified denitrification as the dominating pathway for N-removal and abundances of denitrification genes were strong indicators of plant associated denitrification activity. The magnitude and direction of the effect differed among the plant species, with the aquatic moss Drepanocladus fluitans showing exceptionally high ratios between denitrification and uptake rates, compared to the other species. However, to acquire realistic estimates of N-removal potential of specific wetlands and their associated plant species, the total plant biomass needs to be considered. The species-specific plant N-uptake and abundance of denitrification genes on the root or plant surfaces were affected by the presence of other plant species, which show that both multi- and inter-trophic interactions are occurring. Future studies on N-removal potential of wetland plant species should consider how to best exploit these interactions in sub-arctic wetlands. Copyright © 2015 Elsevier Ltd. All rights reserved.

Similar temperature responses suggest future climate warming will not alter partitioning between denitrification and anammox in temperate marine sediments.

PubMed

Brin, Lindsay D; Giblin, Anne E; Rich, Jeremy J

2017-01-01

Removal of biologically available nitrogen (N) by the microbially mediated processes denitrification and anaerobic ammonium oxidation (anammox) affects ecosystem N availability. Although few studies have examined temperature responses of denitrification and anammox, previous work suggests that denitrification could become more important than anammox in response to climate warming. To test this hypothesis, we determined whether temperature responses of denitrification and anammox differed in shelf and estuarine sediments from coastal Rhode Island over a seasonal cycle. The influence of temperature and organic C availability was further assessed in a 12-week laboratory microcosm experiment. Temperature responses, as characterized by thermal optima (T opt ) and apparent activation energy (E a ), were determined by measuring potential rates of denitrification and anammox at 31 discrete temperatures ranging from 3 to 59 °C. With a few exceptions, T opt and E a of denitrification and anammox did not differ in Rhode Island sediments over the seasonal cycle. In microcosm sediments, E a  was somewhat lower for anammox compared to denitrification across all treatments. However, T opt  did not differ between processes, and neither E a  nor T opt  changed with warming or carbon addition. Thus, the two processes behaved similarly in terms of temperature responses, and these responses were not influenced by warming. This led us to reject the hypothesis that anammox is more cold-adapted than denitrification in our study system. Overall, our study suggests that temperature responses of both processes can be accurately modeled for temperate regions in the future using a single set of parameters, which are likely not to change over the next century as a result of predicted climate warming. We further conclude that climate warming will not directly alter the partitioning of N flow through anammox and denitrification. © 2016 John Wiley & Sons Ltd.

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

PubMed

Jones, Christopher M; Stres, Blaz; Rosenquist, Magnus; Hallin, Sara

2008-09-01

Denitrification is a facultative respiratory pathway in which nitrite (NO2(-)), nitric oxide (NO), and nitrous oxide (N2O) are successively reduced to nitrogen gas (N(2)), effectively closing the nitrogen cycle. The ability to denitrify is widely dispersed among prokaryotes, and this polyphyletic distribution has raised the possibility of horizontal gene transfer (HGT) having a substantial role in the evolution of denitrification. Comparisons of 16S rRNA and denitrification gene phylogenies in recent studies support this possibility; however, these results remain speculative as they are based on visual comparisons of phylogenies from partial sequences. We reanalyzed publicly available nirS, nirK, norB, and nosZ partial sequences using Bayesian and maximum likelihood phylogenetic inference. Concomitant analysis of denitrification genes with 16S rRNA sequences from the same organisms showed substantial differences between the trees, which were supported by examining the posterior probability of monophyletic constraints at different taxonomic levels. Although these differences suggest HGT of denitrification genes, the presence of structural variants for nirK, norB, and nosZ makes it difficult to determine HGT from other evolutionary events. Additional analysis using phylogenetic networks and likelihood ratio tests of phylogenies based on full-length sequences retrieved from genomes also revealed significant differences in tree topologies among denitrification and 16S rRNA gene phylogenies, with the exception of the nosZ gene phylogeny within the data set of the nirK-harboring genomes. However, inspection of codon usage and G + C content plots from complete genomes gave no evidence for recent HGT. Instead, the close proximity of denitrification gene copies in the genomes of several denitrifying bacteria suggests duplication. Although HGT cannot be ruled out as a factor in the evolution of denitrification genes, our analysis suggests that other phenomena, such gene duplication/divergence and lineage sorting, may have differently influenced the evolution of each denitrification gene.

Autotrophic denitrification supported by biotite dissolution in crystalline aquifers (1): New insights from short-term batch experiments.

PubMed

Aquilina, Luc; Roques, Clément; Boisson, Alexandre; Vergnaud-Ayraud, Virginie; Labasque, Thierry; Pauwels, Hélène; Pételet-Giraud, Emmanuelle; Pettenati, Marie; Dufresne, Alexis; Bethencourt, Lorine; Bour, Olivier

2018-04-01

We investigate denitrification mechanisms through batch experiments using crushed rock and groundwater from a granitic aquifer subject to long term pumping (Ploemeur, France). Except for sterilized experiments, extensive denitrification reaction induces NO 3 decreases ranging from 0.3 to 0.6mmol/L. Carbon concentrations, either organic or inorganic, remain relatively stable and do not document potential heterotrophic denitrification. Batch experiments show a clear effect of mineral dissolution which is documented through cation (K, Na, Ca) and Fluoride production. These productions are tightly related to denitrification progress during the experiment. Conversely, limited amounts of SO 4 , systematically lower than autotrophic denitrification coupled to sulfur oxidation stoichiometry, are produced during the experiments which indicates that sulfur oxidation is not likely even when pyrite is added to the experiments. Analysis of cation ratios, both in isolated minerals of the granite and within water of the batch, allow the mineral dissolution during the experiments to be quantified. Using cation ratios, we show that batch experiments are characterized mainly by biotite dissolution. As biotite contains 21 to 30% of Fe and 0.3 to 1.7% of F, it constitutes a potential source for these two elements. Denitrification could be attributed to the oxidation of Fe(II) contained in biotite. We computed the amount of K and F produced through biotite dissolution when entirely attributing denitrification to biotite dissolution. Computed amounts show that this process may account for the observed K and F produced. We interpret these results as the development of microbial activity which induces mineral dissolution in order to uptake Fe(II) which is used for denitrification. Although pyrite is probably available, SO 4 and cation measurements favor a large biotite dissolution reaction which could account for all the observed Fe production. Chemical composition of groundwater produced from the Ploemeur site indicates similar denitrification processes although original composition shows mainly plagioclase dissolution. Copyright © 2017 Elsevier B.V. All rights reserved.

[Feasibility and Economic Analysis of Denitrification of Photovoltaic Wastewater Containing High Fluorine].

PubMed

Li, Xiang; Zhu, Liang; Huang, Yong; Yang, Peng-bing; Cui, Jian-hong; Ma, Hang

2016-04-15

In order to reduce acid and alkali dosing in wastewater treatment process of polycrystalline silicon by using denitrification after fluoride removal. This experiment studied the feasibility of first removing nitrogen using the denitrification process by start-up denitrifying reactor before fluoride removal. The results showed that the F⁻ concentration in the waste water to had a certain influence on the denitrification. When the concentration of F⁻ was controlled to about 750 mg · L⁻¹, the activity of denitrifying bacteria was not significantly influenced; when the concentration of F⁻ continued to increase, the denitrification efficiency of denitrifying sludge gradually reduced. In wastewater treatment of polycrystalline silicon, if the concentration of F⁻ was kept below 800 mg · L⁻¹, the denitrification performance of denitrifying sludge was not obviously affected. After 93 d operation, the total nitrogen in effluent was stabilized below 50 mg · L⁻¹, the total nitrogen removal efficiency reached 90%, and the removal rate reached 5 kg · (m³ · d)⁻¹. The calculation result showed, compared with the conventional denitrification process after fluoride removal, the proposed process could save about 70% of acid and 100% of alkali dosing, greatly reducing the cost of wastewater treatment.

Biological denitrification in marine aquaculture systems: A multiple electron donor microcosm study.

PubMed

He, Qiaochong; Zhang, Dongqing; Main, Kevan; Feng, Chuanping; Ergas, Sarina J

2018-05-08

There is a lack of information on denitrification of saline wastewaters, such as those from marine recirculating aquaculture systems (RAS), ion exchange brines and wastewater in areas where sea water is used for toilet flushing. In this study, side-by-side microcosms were used to compare methanol, fish waste (FW), wood chips, elemental sulfur (S 0 ) and a combination of wood chips and sulfur for saline wastewater denitrification. The highest denitrification rate was obtained with methanol (23.4 g N/(m 3 ·d)), followed by FW (4.5 g N/(m 3 ·d)), S 0 (3.5 g N/(m 3 ·d)), eucalyptus mulch (2.6 g N/(m 3 ·d)), and eucalyptus mulch with sulfur (2.2 g N/(m 3 ·d)). Significant differences were observed in denitrification rate for different wood species (pine > oak ≫ eucalyptus) due to differences in readily biodegradable organic carbon released. A pine wood-sulfur heterotrophic-autotrophic denitrification (P-WSHAD) process provided a high denitrification rate (7.2-11.9 g N/(m 3 ·d)), with lower alkalinity consumption and sulfate generation than sulfur alone. Copyright © 2018 Elsevier Ltd. All rights reserved.

Monitoring induced denitrification during managed aquifer recharge in an infiltration pond

NASA Astrophysics Data System (ADS)

Grau-Martínez, Alba; Folch, Albert; Torrentó, Clara; Valhondo, Cristina; Barba, Carme; Domènech, Cristina; Soler, Albert; Otero, Neus

2018-06-01

Managed aquifer recharge (MAR) is a well-known technique for improving water quality and increasing groundwater resources. Denitrification (i.e. removal of nitrate) can be enhanced during MAR by coupling an artificial recharge pond with a permeable reactive layer (PRL). In this study, we examined the suitability of a multi-isotope approach for assessing the long-term effectiveness of enhancing denitrification in a PRL containing vegetal compost. Batch laboratory experiments confirmed that the PRL was still able to enhance denitrification two years after its installation in the infiltration pond. At the field scale, changes in redox indicators along a flow path and below the MAR-PRL system were monitored over 21 months during recharge and non-recharge periods. Results showed that the PRL was still releasing non-purgeable dissolved organic carbon five years after its installation. Nitrate concentration coupled with isotopic data collected from the piezometer network at the MAR system indicated that denitrification was occurring in the saturated zone immediately beneath the infiltration pond, where recharged water and native groundwater mix. Furthermore, longer operational periods of the MAR-PRL system increased denitrification extent. Multi-isotope analyses are therefore proved to be useful tools in identifying and quantifying denitrification in MAR-PRL systems.

Ambient and potential denitrification rates in marsh soils of Northeast Creek and Bass Harbor Marsh watersheds, Mount Desert Island, Maine

USGS Publications Warehouse

Huntington, Thomas G.; Culbertson, Charles W.; Duff, John H.

2012-01-01

Nutrient enrichment from atmospheric deposition, agricultural activities, wildlife, and domestic sources is a concern at Acadia National Park on Mount Desert Island, Maine, because of the potential problems of degradation of water quality and eutrophication in estuaries. Degradation of water quality has been observed at Bass Harbor Marsh estuary in the park but only minimally in Northeast Creek estuary. Previous studies at Acadia National Park have estimated nutrient inputs to estuaries from atmospheric deposition and surface-water runoff, and have identified shallow groundwater as an additional potential source of nutrients. Previous studies at Acadia National Park have assumed that a certain fraction of the nitrogen input was removed through microbial denitrification, but rates of denitrification (natural or maximum potential) in marsh soils have not been determined. The U.S. Geological Survey, in cooperation with Acadia National Park, measured in-place denitrification rates in marsh soils in Northeast Creek and in Bass Harbor Marsh watersheds during summer 2008 and summer 2009. Denitrification was measured under ambient conditions as well as after additions of inorganic nitrogen and glucose. In-place denitrification rates under ambient conditions were similar to those reported for other coastal wetlands, although they were generally lower than those reported for salt marshes having high ambient concentrations of nitrate (NO3). Denitrification rates generally increased by at least an order of magnitude following NO3 additions, with or without glucose (as the carbohydrate) additions, compared with the ambient treatments that received no nutrient additions. The treatment that added both glucose and NO3 resulted in a variety of denitrification responses when compared with the addition of NO3 alone. In most cases, the addition of glucose to a given rate of NO3 addition resulted in higher rates of denitrification. These variable responses indicate that the amount of labile carbohydrates can limit denitrification even if NO3 is present. For most sites in both watersheds, the maximum denitrification rates ranged from of 150 to 900 micromoles of nitrous oxide per square meter per hour. These rates were equivalent to the release of 37 to 221 grams of nitrogen per square meter per year. Weak positive correlations were observed for soil temperature and for measured ammonium concentration in groundwater. Weak negative correlations were observed between denitrification rate and water level and specific conductance. The rates of denitrification in Bass Harbor Marsh and Northeast Creek under ambient conditions, both of which were relatively low, indicate that NO3 availability is low in both systems. It is evident from the addition of combined treatments of NO3 and glucose that these marsh soils are capable of comparatively high rates of denitrification, therefore, estuarine eutrophication is not a result of nitrogen inputs to marsh soils that are in excess of the denitrification capacity in these systems. If terrestrial inputs to the estuary are the cause of the observed eutrophic condition in Bass Harbor Marsh, then these inputs to the estuary must bypass the marsh in channelized surface flow, or perhaps they circumvent the marsh in shallow groundwater seepage along subsurface pathways that enter the estuary directly.

Effects of long-term pig manure application on antibiotics, abundance of antibiotic resistance genes (ARGs), anammox and denitrification rates in paddy soils.

PubMed

Rahman, M Mizanur; Shan, Jun; Yang, Pinpin; Shang, Xiaoxia; Xia, Yongqiu; Yan, Xiaoyuan

2018-05-09

Previous studies of long-term manure applications in paddy soil mostly focused on the effects on denitrification, occurrence of antibiotics and antibiotic resistance genes (ARGs) without considering the effects on anaerobic ammonium oxidation (anammox). Here, we investigated the potential rates of anammox and denitrification, occurrence of antibiotics and AGRs in response to three fertilization regimes (C, no fertilizer; N, mineral fertilizer; and NM, N plus pig manure) in six long-term paddy experiment sites across China. The potential rates of anammox (0.11-3.64 nmol N g -1 h -1 ) and denitrification (1.5-29.05 nmol N g -1 h -1 ) were correlated with the abundance of anammox genes (hzsB) and denitrification functional genes (narG, nirK, nirS and nosZ), respectively. The anammox and denitrification rates were affected by soil organic carbon (SOC) and significantly (p < 0.05) increased in NM treatments relative to those in N treatments. Although pig manure application increased antibiotic concentrations and abundance of ARGs compared with N treatments, the increased antibiotics did not directly affect the anammox and denitrification rates. Our results suggested that long-term pig manure application significantly increased antibiotic concentrations, abundance of ARGs, and rates of anammox and denitrification, and that the effects of pig manure-derived antibiotics on anammox and denitrification were marginal. This is the first report that investigates the effects of long-term pig manure application on anammox in paddy soils. More attention should be paid to the potential ecological risk of increased ARGs caused by pig manure application in paddy soils. Copyright © 2018 Elsevier Ltd. All rights reserved.

Denitrification and potential nitrous oxide and carbon dioxide production in brownfield wetland soils.

PubMed

Palta, Monica M; Ehrenfeld, Joan G; Groffman, Peter M

2013-09-01

Brownfields, previously developed sites that are derelict, vacant, or underused, are ubiquitous in urban areas. Wetlands on brownfields often retain rain and stormwater longer than the surrounding landscape because they are low-lying; this increases the possibility for these areas to process waterborne contaminants from the urban environment. In the northeastern United States, atmospheric deposition of nitrate (NO) is high. Denitrification, a microbial process common in wetlands, is a means of removing excess NO. Nitrogen gas is the desired end product of denitrification, but incomplete denitrification results in the production of NO, a greenhouse gas. The goal of this study was to investigate the potential of brownfield wetlands to serve as sinks for inorganic nitrogen and sources of greenhouse gases. We examined limitations to denitrification and NO production in brownfield wetland soils in New Jersey. Soil C:N ratios were high (18-40) and intact core denitrification (-0.78 to 11.6 μg NO-N kg dry soil d) and N mineralization (0.11-2.97 mg N kg dry soil d) were low for all sites. However, soil NO increased during dry periods. Nitrate additions to soil slurries increased denitrification rates, whereas labile C additions did not, indicating that soil denitrifiers were nitrogen limited. Incubations indicated that the end product of denitrification was primarily NO and not N. These results indicate that brownfield wetlands can develop significant denitrification capacity, potentially causing NO limitation. They might be significant sinks for atmospheric NO but may also become a significant source of NO if NO deposition were to increase. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Anaerobic soil volume as a major controlling factor for soil denitrification and respiration

NASA Astrophysics Data System (ADS)

Reent Köster, Jan; Tong, Bingxin; Grosz, Balázs; Burkart, Stefan; Ruoss, Nicolas; Well, Reinhard

2017-04-01

Gas diffusion in soil is a key variable to control denitrification and its N2O to N2 product ratio since it affects two major proximal denitrification factors, i.e. the concentrations of O2 and of N2O. Gas diffusivity is governed by the structure and the state of water saturation of the pore system. At a given O2 consumption rate decreasing diffusivity causes an enhanced anaerobic soil volume where denitrification can occur. Gas diffusivity is generally quantified as bulk diffusion coefficients that represent the lineal diffusive gas flux through the soil matrix. However, the spatial distribution of respiratory O2 consumption and denitrification - and hence the local concentration of O2 and N2O - is highly non-homogeneous. Knowledge of the anaerobic soil volume fraction (ansvf) has been proposed as a key control on denitrification, and has subsequently been used in many denitrification models. The ansvf has previously been quantified by direct measurement of O2 distribution in individual soil aggregates using microsensors. The measured ansvf corresponded to modelled values based on measured aggregate diffusivity and respiration, but was not yet correlated with measured denitrification rates. In the present ongoing study, we are incubating soil cores amended with nitrate and organic litter in an automated mesocosm system under aerobic as well as anaerobic conditions. An N2 depleted incubation atmosphere and the 15N labeled soil nitrate pool facilitate quantification of the N2 production in the soil by IRMS, and fluxes of N2O and CO2 are monitored via gas chromatography. The ansvf and the measured denitrification and respiration rates will then be used for model validation. During the session we will present first results of this study.

Nitrate removal in stream ecosystems measured by 15N addition experiments: Denitrification

USGS Publications Warehouse

Mulholland, P.J.; Hall, R.O.; Sobota, D.J.; Dodds, W.K.; Findlay, S.E.G.; Grimm, N. B.; Hamilton, S.K.; McDowell, W.H.; O'Brien, J. M.; Tank, J.L.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Gregory, S.V.; Johnson, S.L.; Meyer, J.L.; Peterson, B.J.; Poole, G.C.; Valett, H.M.; Webster, J.R.; Arango, C.P.; Beaulieu, J.J.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Helton, A.M.; Johnson, L.T.; Niederlehner, B.R.; Potter, J.D.; Sheibley, R.W.; Thomasn, S.M.

2009-01-01

We measured denitrification rates using a field 15N-NO- 3 tracer-addition approach in a large, cross-site study of nitrate uptake in reference, agricultural, and suburban-urban streams. We measured denitrification rates in 49 of 72 streams studied. Uptake length due to denitrification (SWden) ranged from 89 m to 184 km (median of 9050 m) and there were no significant differences among regions or land-use categories, likely because of the wide range of conditions within each region and land use. N2 production rates far exceeded N2O production rates in all streams. The fraction of total NO-3 removal from water due to denitrification ranged from 0.5% to 100% among streams (median of 16%), and was related to NHz 4 concentration and ecosystem respiration rate (ER). Multivariate approaches showed that the most important factors controlling SWden were specific discharge (discharge / width) and NO-3 concentration (positive effects), and ER and transient storage zones (negative effects). The relationship between areal denitrification rate (Uden) and NO- 3 concentration indicated a partial saturation effect. A power function with an exponent of 0.5 described this relationship better than a Michaelis-Menten equation. Although Uden increased with increasing NO- 3 concentration, the efficiency of NO-3 removal from water via denitrification declined, resulting in a smaller proportion of streamwater NO-3 load removed over a given length of stream. Regional differences in stream denitrification rates were small relative to the proximate factors of NO-3 concentration and ecosystem respiration rate, and land use was an important but indirect control on denitrification in streams, primarily via its effect on NO-3 concentration. ?? 2009.

Applying Reactive Barrier Technology to Enhance Microbially-mediated Denitrification during Managed Aquifer Recharge

NASA Astrophysics Data System (ADS)

Beganskas, S.; Weir, W. B.; Harmon, R. E.; Gorski, G.; Fisher, A. T.; Saltikov, C.; Young, K. S.; Runneals, D.; Teo, E. K.; Stoneburner, B.; Hernandez, J.

2015-12-01

We are running field experiments to observe and quantify microbially-mediated water quality improvement via denitrification during infiltration in the shallow subsurface. Nitrate is a pervasive groundwater contaminant, and nitrate removal through denitrification can occur during infiltration in natural and anthropogenic systems, including during managed aquifer recharge (MAR). The rate of denitrification can vary depending on factors such as infiltration rate; previous work suggests that denitrification rates can increase monotonically with infiltration rates until reaching a critical threshold. We are performing controlled field tests of variables that affect denitrification rate, including sampling to link water chemistry changes to microbial ecology and activity. This study explores how microbial activity and denitrification rates respond to different infiltration rates and the presence or absence of a reactive material (wood chips, a carbon source). We are conducting four two-week-long tests, each under different conditions. For each test, we measure bulk infiltration rate (the sum of lateral and vertical infiltration), vertical infiltration rate using heat as a tracer, and water level. We collect surface and subsurface water samples daily, and we collect soil samples at the start and end of each test. For each water sample, we are measuring NO3-, NO2-, NH3, DOC, and N and O isotopes in nitrate. Soil samples will be tested for grain size, total C/N, and the presence of microbiological genes associated with denitrification. These results will expand our knowledge of the conditions under which denitrification occurs by implicating specific microorganisms and physical infiltration parameters. Our design has the potential for additional experimentation with variables that impact water chemistry during infiltration. This study has broad applications for designing MAR systems that effectively improve water supply and water quality.

Hyporheic zone denitrification: controls on effective reaction depth and contribution to whole-stream mass balance

USGS Publications Warehouse

Harvey, Judson W.; Böhlke, John Karl; Voytek, Mary A.; Scott, Durelle; Tobias, Craig R.

2013-01-01

Stream denitrification is thought to be enhanced by hyporheic transport but there is little direct evidence from the field. To demonstrate at a field site, we injected 15NO3−, Br (conservative tracer), and SF6 (gas exchange tracer) and compared measured whole-stream denitrification with in situ hyporheic denitrification in shallow and deeper flow paths of contrasting geomorphic units. Hyporheic denitrification accounted for between 1 and 200% of whole-stream denitrification. The reaction rate constant was positively related to hyporheic exchange rate (greater substrate delivery), concentrations of substrates DOC and nitrate, microbial denitrifier abundance (nirS), and measures of granular surface area and presence of anoxic microzones. The dimensionless product of the reaction rate constant and hyporheic residence time, λhzτhz define a Damköhler number, Daden-hz that was optimal in the subset of hyporheic flow paths where Daden-hz ≈ 1. Optimal conditions exclude inefficient deep pathways transport where substrates are used up and also exclude inefficient shallow pathways that require repeated hyporheic entries and exits to complete the reaction. The whole-stream reaction significance, Rs (dimensionless), was quantified by multiplying Daden-hz by the proportion of stream discharge passing through the hyporheic zone. Together these two dimensionless metrics, one flow-path scale and the other reach-scale, quantify the whole-stream significance of hyporheic denitrification. One consequence is that the effective zone of significant denitrification often differs from the full depth of the hyporheic zone, which is one reason why whole-stream denitrification rates have not previously been explained based on total hyporheic-zone metrics such as hyporheic-zone size or residence time.

The role of C:N:P stoichiometry in affecting denitrification in sediments from agricultural surface and tile-water wetlands.

PubMed

Grebliunas, Brian D; Perry, William L

2016-01-01

Nutrient stoichiometry within a wetland is affected by the surrounding land use, and may play a significant role in the removal of nitrate (NO3-N). Tile-drained, agricultural watersheds experience high seasonal inputs of NO3-N, but low phosphorus (PO4-P) and dissolved organic carbon (DOC) loads relative to surface water dominated systems. This difference may present stoichiometric conditions that limit denitrification within receiving waterways. We investigated how C:N:P ratios affected denitrification rates of sediments from tile-drained mitigation wetlands incubated for: 0, 5, 10, and 20 days. We then tested whether denitrification rates of sediments from surface-water and tile-drained wetlands responded differently to C:N ratios of 2:1 versus 4:1. Ratios of C:N:P (P < 0.05) and incubation length (P < 0.05) had a significant effect on denitrification in tile-drained wetland sediments. Carbon limitation of denitrification became evident at elevated NO3-N concentrations (20 mg L(-1)). Denitrification measured from tile water and surface water wetland sediments increased significantly (P < 0.05) at the 2:1 and 4:1 C:N treatments. The results from both experiments suggest wetland sediments provide a limiting pool of labile DOC to maintain prolonged NO3-N removal. Also, DOC limitation became more evident at elevated NO3-N concentrations (20 mg L(-1)). Irrespective of NO3-N concentrations, P did not limit denitrification rates. In addition to wetting period, residence time, and maintenance of anaerobic conditions, the availability of labile DOC is playing an important limiting role in sediment denitrification within mitigation wetlands.

Assessment of the denitrification process in alluvial wetlands at floodplain scale using the SWAT model

USDA-ARS?s Scientific Manuscript database

As alluvial plains support intensive agricultural activities, they often suffer from groundwater nitrate pollution. Denitrification is recognized as an important process in nitrate pollution control in riparian zones. In shallow aquifer zones influenced by recharged surface water, denitrification ...

Denitrification and N20 emissions from Carolina Bays receiving poultry runoff

USDA-ARS?s Scientific Manuscript database

On the southeastern Coastal Plain, there are depressional wetlands known as Carolina Bays that may receive runoff from agricultural land. Little is known about denitrification and gas emission within these isolated wetlands. Three forested Carolina Bays were selected to observe denitrification enzym...

Identifizierung der Nitratabbauprozesse und Prognose des Nitratabbaupotenzials in den Sedimenten des Hessischen Rieds

NASA Astrophysics Data System (ADS)

Kludt, Christoph; Weber, Frank-Andreas; Bergmann, Axel; Knöller, Kay; Berthold, Georg; Schüth, Christoph

2016-09-01

Microbial denitrification contributes significantly to the mitigation of nitrate contamination in sedimentary aquifers by reducing nitrate coupled to the consumption of organic carbon (heterotrophic) and iron sulphides like pyrite (autotrophic). However, these phases are often only present in trace amounts and can become depleted, so that denitrification will eventually cease. In order to implement measures within the EC-Water Framework Directive, we investigated the denitrification potential and the denitrification processes in the sediments of the Hessian Ried. The reduction potential was quantified and characterized by solid-phase analyses of drill core samples. Depth-oriented investigations of hydrochemistry (i.e. stable isotopes, N2Excess) allowed determining nitrate input, reduction progress and average reduction kinetics upstream of selected wells. Despite low sulphide contents (max. 123 mg-S/kg), autotrophic denitrification was typically the dominant process. The results can be used to delineate risk areas, downstream of which denitrification can be expected to cease in the near future.

Nitrate removal from high strength nitrate-bearing wastes in granular sludge sequencing batch reactors.

PubMed

Krishna Mohan, Tulasi Venkata; Renu, Kadali; Nancharaiah, Yarlagadda Venkata; Satya Sai, Pedapati Murali; Venugopalan, Vayalam Purath

2016-02-01

A 6-L sequencing batch reactor (SBR) was operated for development of granular sludge capable of denitrification of high strength nitrates. Complete and stable denitrification of up to 5420 mg L(-1) nitrate-N (2710 mg L(-1) nitrate-N in reactor) was achieved by feeding simulated nitrate waste at a C/N ratio of 3. Compact and dense denitrifying granular sludge with relatively stable microbial community was developed during reactor operation. Accumulation of large amounts of nitrite due to incomplete denitrification occurred when the SBR was fed with 5420 mg L(-1) NO3-N at a C/N ratio of 2. Complete denitrification could not be achieved at this C/N ratio, even after one week of reactor operation as the nitrite levels continued to accumulate. In order to improve denitrification performance, the reactor was fed with nitrate concentrations of 1354 mg L(-1), while keeping C/N ratio at 2. Subsequently, nitrate concentration in the feed was increased in a step-wise manner to establish complete denitrification of 5420 mg L(-1) NO3-N at a C/N ratio of 2. The results show that substrate concentration plays an important role in denitrification of high strength nitrate by influencing nitrite accumulation. Complete denitrification of high strength nitrates can be achieved at lower substrate concentrations, by an appropriate acclimatization strategy. Copyright © 2015 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Nitrifier-induced denitrification is an important source of soil nitrous oxide and can be inhibited by a nitrification inhibitor 3,4-dimethylpyrazole phosphate.

PubMed

Shi, Xiuzhen; Hu, Hang-Wei; Zhu-Barker, Xia; Hayden, Helen; Wang, Juntao; Suter, Helen; Chen, Deli; He, Ji-Zheng

2017-12-01

Soil ecosystem represents the largest contributor to global nitrous oxide (N 2 O) production, which is regulated by a wide variety of microbial communities in multiple biological pathways. A mechanistic understanding of these N 2 O production biological pathways in complex soil environment is essential for improving model performance and developing innovative mitigation strategies. Here, combined approaches of the 15 N- 18 O labelling technique, transcriptome analysis, and Illumina MiSeq sequencing were used to identify the relative contributions of four N 2 O pathways including nitrification, nitrifier-induced denitrification (nitrifier denitrification and nitrification-coupled denitrification) and heterotrophic denitrification in six soils (alkaline vs. acid soils). In alkaline soils, nitrification and nitrifier-induced denitrification were the dominant pathways of N 2 O production, and application of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) significantly reduced the N 2 O production from these pathways; this is probably due to the observed reduction in the expression of the amoA gene in ammonia-oxidizing bacteria (AOB) in the DMPP-amended treatments. In acid soils, however, heterotrophic denitrification was the main source for N 2 O production, and was not impacted by the application of DMPP. Our results provide robust evidence that the nitrification inhibitor DMPP can inhibit the N 2 O production from nitrifier-induced denitrification, a potential significant source of N 2 O production in agricultural soils. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Using natural biomass microorganisms for drinking water denitrification.

PubMed

Costa, Darleila Damasceno; Gomes, Anderson Albino; Fernandes, Mylena; Lopes da Costa Bortoluzzi, Roseli; Magalhães, Maria de Lourdes Borba; Skoronski, Everton

2018-07-01

Among the methods that are studied to eliminate nitrate from drinking water, biological denitrification is an attractive strategy. Although several studies report the use of denitrifying bacteria for nitrate removal, they usually involve the use of sewage sludge as biomass to obtain the microbiota. In the present study, denitrifying bacteria was isolated from bamboo, and variable parameters were controlled focusing on optimal bacterial performance followed by physicochemical analysis of water adequacy. In this way, bamboo was used as a source of denitrifying microorganisms, using either Immobilized Microorganisms (IM) or Suspended Microorganisms (SM) for nitrate removal. Denitrification parameters optimization was carried out by analysis of denitrification at different pH values, temperature, nitrate concentrations, carbon sources as well as different C/N ratios. In addition, operational stability and denitrification kinetics were evaluated. Microorganisms present in the biomass responsible for denitrification were identified as Proteus mirabilis. The denitrified water was submitted to physicochemical treatment such as coagulation and flocculation to adjust to the parameters of color and turbidity to drinking water standards. Denitrification using IM occurred with 73% efficiency in the absence of an external carbon source. The use of SM provided superior denitrification efficiency using ethanol (96.46%), glucose (98.58%) or glycerol (98.5%) as carbon source. The evaluation of the operational stability allowed 12 cycles of biomass reuse using the IM and 9 cycles using the SM. After physical-chemical treatment, only SM denitrified water remained within drinking water standards parameters of color and turbidity. Copyright © 2018 Elsevier Ltd. All rights reserved.

Non-linear hydraulic properties of woodchips necessary to design denitrification beds

USDA-ARS?s Scientific Manuscript database

Denitrification beds are being used to reduce the transport of water-soluble nitrate via subsurface drainage systems to surface water. Only recently has the non-linearity of water flow through woodchips been ascertained. To successfully design and model denitrification beds for optimum nitrate remov...

The effect of floating vegetation on denitrification and greenhouse gas production in wetland mesocosms

NASA Astrophysics Data System (ADS)

Jacobs, A. E.; Harrison, J. A.

2012-12-01

Anthropogenic intensification of nitrogen (N) loading to aquatic ecosystems is widespread and can lead to the degradation of these systems. Wetlands are important sites for N removal via denitrification, the microbially mediated reduction of reactive nitrate to inert N2 gas, but they can also produce high levels of greenhouse gases. Floating plants play an important role in encouraging denitrification, since they create low oxygen conditions that may favor denitrification. We investigated whether wetland sediments with floating plant cover had higher denitrification and greenhouse gas production rates than wetland sediments without floating plants. Replicate flow-through mesocosms with wetland sediment and water were constructed in a growth chamber to mimic the wetland where the sediment and water were collected. Mesocosm treatments were covered with floating vegetation (duckweed), an opaque tarp, or no cover to determine how cover type affects denitrification and greenhouse gas production and whether biotic or abiotic factors are likely responsible for observed differences. Denitrification and greenhouse gas production rates were calculated by measuring excess N2 gas, methane, and nitrous oxide concentrations in the water column and measuring the gas exchange rates between the water column and the atmosphere. Gas exchange rates were measured using an inert volatile tracer added to the water column and accumulation of gas in the mesocosm headspace. Additional mesocosm experiments were performed to determine how duckweed-dominated wetland systems respond to nitrogen loading and which mechanism for lowering dissolved oxygen concentrations is important in affecting denitrification under floating vegetation. Mesocosms with floating vegetation had lower dissolved oxygen than no cover or tarp-covered mesocosms, which is consistent with field and literature observations. Water flowing out of the mesocosms had statistically lower total nitrogen and nitrate concentrations compared to inflow water, and calculated denitrification was statistically higher in the floating vegetation treatments compared to the other treatments. Greenhouse gas production, measured in CO2 equivalents for N2O and CH4, was highly variable and not statistically different between the treatments. Denitrification in the tarp covered mesocosms was similar to the no-cover treatment, indicating that biotic effects in the floating vegetation treatment may be important in lowering water column oxygen levels and increasing denitrification. Understanding how floating vegetation affects total nitrogen loss, denitrification, and greenhouse gas production can be used to weigh ecological costs and benefits of different vegetation types, especially in constructed and managed wetlands.

Denitrification nitrogen gas formation and gene expression in alpine grassland soil as affected by climate change conditions

NASA Astrophysics Data System (ADS)

Chen, Zhe; Wang, Changhui; Gschwendtner, Silvia; Schloter, Michael; Butterbach-Bahl, Klaus; Dannenmann, Michael

2013-04-01

Due to methodological problems, reliable data on soil dinitrogen (N2) emission by denitrification are extremely scarce, and the impacts of climate change on nitrogen (N) gas formation by denitrification and N gas product ratios as well as the underlying microbial drivers remain unclear. We combined the helium-gas-flow-soil-core technique for simultaneously quantification of nitrous oxide (N2O) and N2 emission with the reverse transcript qPCR technology. Our goals were to characterize denitrification dynamics and N gas product ratios in alpine grassland soil as affected by climate change conditions and to evaluate relationships between denitrification gene expression and N gas emission. We used soils from the pre-alpine grassland Terrestrial Environmental Observatory (TERENO), exposed to ambient temperature and precipitation (control treatment), or three years of simulated climate change conditions (increased temperature, reduction of summer precipitation and reduced snow cover). Soils were amended with glucose and nitrate and incubated subsequently at 1) 5°C and 20% oxygen; 2) 5°C and 0% oxygen; 3) 20°C and 0% oxygen until stabilization of N gas emissions in each incubation step. After switching incubation conditions to 0% oxygen and 20°C, N2O emission peaked immediately and declined again, followed by a delayed peak in N2 emission. The dynamics of cnorB gene expression, encoding the reduction of nitric oxide (NO) to N2O, followed the N2O emission pattern, while nosZ gene expression, encoding N2O reduction to N2 followed the course of N2 emission. The mean N2O:N2 ratios were 1.31 + 0.10 and 1.56 + 0.16 for control and climate change treatment respectively, but the denitrification potential was overall lower in climate change treatment. Hence, simulated climate change promoted N2O but lessened N2 emission. This stimulation of N2O was in accordance with increased cnorB gene expression in soil of the climate change treatment. N mass balance calculations revealed that denitrification N gas formation accounted for 21%, dissimilatory nitrate reduction to ammonium for 8%, and microbial immobilization for 73% of nitrate consumption. Overall, our study shows that changes in climate exert feedback on denitrification N gas formation and N gas product ratios via changes in microbial activity at the level of single denitrification steps. The close relationships found between denitrification N gas formation, N gas product ratios and denitrification gene expression suggests a large potential of molecular methods to predict denitrification dynamics in soil.

Nitrification and denitrification activity in simulated beef cattle bedded manure packs

USDA-ARS?s Scientific Manuscript database

Besides significant nitrogen (N) losses through ammonia, N can also be lost as nitrous oxide (N2O) via microbial incomplete nitrification and denitrification in the manure. We conducted lab-scale experiments to determine N2O, denitrification enzyme activity (DEA) and nitrification activity potential...

Screening identification of aerobic denitrification bacteria with high soil desalinization capacity

NASA Astrophysics Data System (ADS)

Jin, H.; Chen, H.; Jin, H.; Qian, Y.; Zhang, K.

2017-08-01

In order to study the mechanism of bacteria used in the saline soil remediation process, the aerobic denitrification bacteria were isolated from an agricultural greenhouse soil in a farm in East China’s Zhejiang Province. The identification, nitrogen reducing characteristics and the denitrification effect of bacteria from different soils at various locations were investigated. The results showed that the NO3- removal rate was 91% with bacteria from the greenhouse soil under aerobic conditions in 52 h, and the bacteria were identified as Gram-positive Castellaniella denitrification bacteria.

Denitrification likely catalyzed by endobionts in an allogromiid foraminifer

PubMed Central

Bernhard, Joan M; Edgcomb, Virginia P; Casciotti, Karen L; McIlvin, Matthew R; Beaudoin, David J

2012-01-01

Nitrogen can be a limiting macronutrient for carbon uptake by the marine biosphere. The process of denitrification (conversion of nitrate to gaseous compounds, including N2 (nitrogen gas)) removes bioavailable nitrogen, particularly in marine sediments, making it a key factor in the marine nitrogen budget. Benthic foraminifera reportedly perform complete denitrification, a process previously considered nearly exclusively performed by bacteria and archaea. If the ability to denitrify is widespread among these diverse and abundant protists, a paradigm shift is required for biogeochemistry and marine microbial ecology. However, to date, the mechanisms of foraminiferal denitrification are unclear, and it is possible that the ability to perform complete denitrification is because of the symbiont metabolism in some foraminiferal species. Using sequence analysis and GeneFISH, we show that for a symbiont-bearing foraminifer, the potential for denitrification resides in the endobionts. Results also identify the endobionts as denitrifying pseudomonads and show that the allogromiid accumulates nitrate intracellularly, presumably for use in denitrification. Endobionts have been observed within many foraminiferal species, and in the case of associations with denitrifying bacteria, may provide fitness for survival in anoxic conditions. These associations may have been a driving force for early foraminiferal diversification, which is thought to have occurred in the Neoproterozoic era when anoxia was widespread. PMID:22134648

Vegetation Loss Decreases Salt Marsh Denitrification Capacity: Implications for Marsh Erosion.

PubMed

Hinshaw, Sarra E; Tatariw, Corianne; Flournoy, Nikaela; Kleinhuizen, Alice; Taylor, Caitlin; Sobecky, Patricia A; Mortazavi, Behzad

2017-08-01

Salt marshes play a key role in removing excess anthropogenic nitrogen (N) loads to nearshore marine ecosystems through sediment microbial processes such as denitrification. However, in the Gulf of Mexico, the loss of marsh vegetation because of human-driven disturbances such as sea level rise and oil spills can potentially reduce marsh capacity for N removal. To investigate the effect of vegetation loss on ecosystem N removal, we contrasted denitrification capacity in marsh and subtidal sediments impacted by the Deepwater Horizon oil spill using a combination of 29 N 2 and 30 N 2 production (isotope pairing), denitrification potential measurements (acetylene block), and quantitative polymerase chain reaction (qPCR) of functional genes in the denitrification pathway. We found that, on average, denitrification capacity was 4 times higher in vegetated sediments because of a combination of enhanced nitrification and higher organic carbon availability. The abundance of nirS-type denitrifers indicated that marsh vegetation regulates the activity, rather than the abundance, of denitrifier communities. We estimated that marsh sediments remove an average of 3.6 t N km -2 y -1 compared to 0.9 t N km -2 y -1 in unvegetated sediments. Overall, our findings indicate that marsh loss results in a substantial loss of N removal capacity in coastal ecosystems.

Limited denitrification in glacial deposit aquifers having thick unsaturated zones (Long Island, USA)

NASA Astrophysics Data System (ADS)

Young, Caitlin; Kroeger, Kevin D.; Hanson, Gilbert

2013-12-01

The goal of this study was to demonstrate how the extent of denitrification, which is indirectly related to dissolved organ carbon and directly related to oxygen concentrations, can also be linked to unsaturated-zone thickness, a mappable aquifer property. Groundwater from public supply and monitoring wells in Northport on Long Island, New York state (USA), were analyzed for denitrification reaction progress using dissolved N2/Ar concentrations by membrane inlet mass spectrometry. This technique allows for discernment of small amounts of excess N2, attributable to denitrification. Results show an average 15 % of total nitrogen in the system was denitrified, significantly lower than model predictions of 35 % denitrification. The minimal denitrification is due to low dissolved organic carbon (29.3-41.1 μmol L-1) and high dissolved oxygen concentrations (58-100 % oxygen saturation) in glacial sediments with minimal solid-phase electron donors to drive denitrification. A mechanism is proposed that combines two known processes for aquifer re-aeration in unconsolidated sands with thick (>10 m) unsaturated zones. First, advective flux provides 50 % freshening of pore space oxygen in the upper 2 m due to barometric pressure changes. Then, oxygen diffusion across the water-table boundary occurs due to high volumetric air content in the unsaturated-zone catchment area.

Sulfur-oxidizing autotrophic and mixotrophic denitrification processes for drinking water treatment: elimination of excess sulfate production and alkalinity requirement.

PubMed

Sahinkaya, Erkan; Dursun, Nesrin

2012-09-01

This study evaluated the elimination of alkalinity need and excess sulfate generation of sulfur-based autotrophic denitrification process by stimulating simultaneous autotrophic and heterotrophic (mixotrophic) denitrification process in a column bioreactor by methanol supplementation. Also, denitrification performances of sulfur-based autotrophic and mixotrophic processes were compared. In autotrophic process, acidity produced by denitrifying sulfur-oxidizing bacteria was neutralized by the external NaHCO(3) supplementation. After stimulating mixotrophic denitrification process, the alkalinity need of the autotrophic process was satisfied by the alkalinity produced by heterotrophic denitrifiers. Decreasing and lastly eliminating the external alkalinity supplementation did not adversely affect the process performance. Complete denitrification of 75 mg L(-1) NO(3)-N under mixotrophic conditions at 4 h hydraulic retention time was achieved without external alkalinity supplementation and with effluent sulfate concentration lower than the drinking water guideline value of 250 mg L(-1). The denitrification rate of mixotrophic process (0.45 g NO(3)-N L(-1) d(-1)) was higher than that of autotrophic one (0.3 g NO(3)-N L(-1) d(-1)). Batch studies showed that the sulfur-based autotrophic nitrate reduction rate increased with increasing initial nitrate concentration and transient accumulation of nitrite was observed. Copyright © 2012 Elsevier Ltd. All rights reserved.

Orbital-scale denitrification changes in the Eastern Arabian Sea during the last 800 kyrs.

PubMed

Kim, Ji-Eun; Khim, Boo-Keun; Ikehara, Minoru; Lee, Jongmin

2018-05-04

Denitrification in the Arabian Sea is closely related to the monsoon-induced upwelling and subsequent phytoplankton production in the surface water. The δ 15 N values of bulk sediments collected at Site U1456 of the International Ocean Discovery Program (IODP) Expedition 355 reveal the orbital-scale denitrification history in response to the Indian Monsoon. Age reconstruction based on the correlation of planktonic foraminifera (Globigerinoides ruber) δ 18 O values with the LR04 stack together with the shipboard biostratigraphic and paleomagnetic data assigns the study interval to be 1.2 Ma. Comparison of δ 15 N values during the last 800 kyrs between Site U1456 (Eastern Arabian Sea) and Site 722B (Western Arabian Sea) showed that δ 15 N values were high during interglacial periods, indicating intensified denitrification, while the opposite was observed during glacial periods. Taking 6‰ as the empirical threshold of denitrification, the Eastern Arabian Sea has experienced a persistent oxygen minimum zone (OMZ) to maintain strong denitrification whereas the Western Arabian Sea has undergone OMZ breakdown during some glacial periods. The results of this study also suggests that five principal oceanographic conditions were changed in response to the Indian Monsoon following the interglacial and glacial cycles, which controls the degree of denitrification in the Arabian Sea.

Using T-RFLP data on denitrifier community composition to inform understanding of denitrification in stream sediments (Invited)

NASA Astrophysics Data System (ADS)

Wang, S.; Somers, K.; Sudduth, E.; Hassett, B.; Bernhardt, E. S.; Urban, D. L.

2010-12-01

We used terminal restriction fragment length polymorphism (T-RFLP), a molecular fingerprinting method, to characterize denitrifier communities in sediments taken from 48 study streams in North Carolina, USA. In addition to characterizing denitrifier communities, we also used denitrification enzyme activity (DEA) assays to measure potential denitrification rates. Due to differences in watershed land-use, study streams covered a gradient of nitrogen and carbon concentrations, as well as a gradient of contaminant loading from stormwater and sanitary sewers. Nitrogen and carbon (i.e., substrate) concentrations are commonly used to make predictions about denitrification rates in streams. Such models do not take into account denitrifier community composition, which may be an important, independent control of denitrification rates, particularly under stressful conditions (e.g., high contaminant loading) that prevent communities from capitalizing on high substrate availability. Our results indicate that substrate availability by itself was a weak predictor of denitrification rates; the same was also true for denitrifier community composition. However, when both factors were incorporated in a multiple regression model, the percent variation explained increased substantially. These findings suggest that T-RFLP, a relatively cost-effective method, can be used to improve our understanding of controls on denitrification rates in streams with varying watershed land-uses.

Glacial-Holocene variability in pelagic denitrification and OMZ intensity along the NW Mexican Margin

NASA Astrophysics Data System (ADS)

Ontiveros Cuadras, J. F.; Thunell, R.; Ruiz-Fernandez, A. C.; Machain-Castillo, M. L.; Tappa, E.

2017-12-01

Denitrification of fixed nitrogen represents a substantial loss of bioavailable nitrogen from the ocean, thus playing a major role in the global nitrogen cycle. Water-column (pelagic) denitrification occurs mostly in the oxygen minimum zones (OMZs), which are situated beneath coastal upwelling areas that are characterized by high settling fluxes of organic detritus and high rates of oxygen utilization from remineralization. Our study uses biogenic components (total organic carbon and opal) and δ15N values of sediments from the NW Mexican Margin to reconstruct variations in denitrification and strength of the OMZ in the eastern tropical North Pacific (ETNP) for the last 36,000 years. During the last glacial period (LGM, 23-18 kyr) the associations between relatively low δ15N values (7-8‰) and low TOC (2-4%) and opal (1-4%) content indicates reduced denitrification due to reduced upwelling and decreased flux of organic matter through the OMZ. This was followed by abrupt acceleration of water-column denitrification (δ15N, 7-10‰) and the strengthening of the OMZ during the latter half of Heinrich Stadial 1 (HS1; 18-14.7 kyr). However, the biogenic component of sediments deposited during HS1 do not increase appreciably, suggesting that the increase in denitrification was not driven by an increase in productivity. Furthermore, the increase in δ15N precedes the deglacial decrease in planktonic foraminiferal δ18O which mostly occurs during the Bolling Alerod (14.7-12.9 kyr). This suggests that the increase in denitrification was not a response to surface warming. Rather, we attribute the rapid increase in denitrification during HS1 to reduced ventilation of the ETNP OMZ. Following the peak in denitrification at the end of HS1, we observe a small but steady decline in δ15N over the last 15 kyr. Higher TOC in Holocene sediments relative to glacial sediments suggests that increased productivity has played a role in maintaining a strong OMZ throughout the Holocene.

Isotopic Expression of Soil Denitrification across Gradients in Nitrogen and Carbon Availability

NASA Astrophysics Data System (ADS)

Walker, R.; Houlton, B. Z.; Perakis, S. S.

2016-12-01

Denitrification removes biologically available nitrogen (N) from ecosystems, making it an important control over the biosphere's N balance, with implications for air quality, human health and climate change. Despite its importance, estimates of the global soil denitrification flux remain highly uncertain. Major challenges lie in directly measuring the gaseous by-products of denitrification and scaling this complex microbial processes in both space and time. Process-based models constrained by empirical isotopic evidence have emerged as a method to help overcome these challenges. These models use the terrestrial 15N budget, along with soil moisture and N input data, to quantify denitrification fluxes and its gaseous forms, including NO, N2O and N2. However, the robustness of this method is limited by incomplete understanding of isotopic expression of denitrification and how it varies across known controls, such as carbon (C) and nitrate (NO3) availability. Here, we present a quantitative assessment of the isotope effect expression of in situ soil denitrification across gradients in N and C concentrations. This experiment tests the hypothesis that isotopic expression of soil denitrification (a kinetic process) increases with NO3 availability (reaction substrate) and decreases with increasing availability of organic C (electron donor). To test the impact of NO3 availability on the isotope effect of denitrification, field incubations experiments were conducted across a natural soil N gradient, ranging from 0.11 to 0.69% N. Similarly, the impact of electron donor availability was tested by conducting field incubations across a natural soil C gradient ranging from 1.94 to 11.60%. Data show that in lower N sites, the percent of NO3 consumed during the incubation was higher, while C availability neither affected the fraction of NO3 consumed nor the rate of consumption. These findings suggest that greater NO3 concentrations allow for greater isotope expression of denitrification in soil, supporting the working hypothesis. These results will be complemented by laboratory experiments in which NO3 concentration, C availability, and temperature are systematically varied. Future goals include the incorporation of these data into existing models to improve estimates of global N fluxes.

The influence of stormwater management practices on denitrification rates of receiving streams in an urban watershed

NASA Astrophysics Data System (ADS)

Cronenberger, M. S.; McMillan, S. K.

2011-12-01

Increasing urbanization and the subsequent disruption of floodplains has led to the need for implementing stormwater management strategies to mitigate the effects of urbanization, including soil and streambank erosion, increased export of nutrients and contaminants and decreased biotic richness. Excessive stormwater runoff due to the abundance of impervious surfaces associated with an urban landscape has led to the ubiquitous use of best management practices (BMPs) to attenuate runoff events and prevent the destructive delivery of large volumes of water to stream channels. As a result, effluent from BMPs (i.e. wetlands and wet ponds) has the potential to alter the character of the receiving stream channel and thus, key ecosystem processes such as denitrification. The purpose of this study was to determine the extent to which BMPs, in the form of constructed wetlands and wet ponds, influence in-stream denitrification rates in the urban landscape of Charlotte, NC. Four sites, two of each BMP type, were evaluated. Sediment samples were collected upstream and downstream of the BMP outflow from May-July 2011 to determine the effect of wetland discharge on in-stream nitrogen removal via denitrification. Denitrification rates were determined using the acetylene block method; water column nutrient and carbon concentrations and sediment organic matter content were also measured. Generally, wetland sites exhibited higher denitrification rates, nitrate concentrations and sediment organic matter content. Our work and others has demonstrated a significant positive correlation between nitrate concentration and denitrification rates, which is the likely driver of the higher observed rates at the wetland sites. Geomorphology was also found to be a key factor in elevated denitrification rates at sites with riffles and boulder jams. Sediment organic matter was found to be higher downstream of BMP outflows at all four sites, but demonstrated no significant relationship with denitrification rates. We are continuing to investigate these spatial (e.g. BMPs, streams) and temporal (e.g. storm pulse, delayed wetland release) patterns, particularly in the context of factors that influence the specific drivers of denitrification. Understanding these patterns is critical to managing stormwater in urban landscapes as we aim to improve water quality while enhancing ecosystem functions.

A coordinated increase in export production and denitrification on the Costa Rica margin during the early Pleistocene

NASA Astrophysics Data System (ADS)

Yuan, V.; Bascom, C., Jr.; Robinson, R. S.

2013-12-01

The oceanic carbon, nitrogen, and oxygen cycles are linked through export production, oxygen consumption, and denitrification. Denitrification, the bacterial reduction of nitrate, is an anoxic process that serves as the primary sink for fixed nitrogen in the ocean. The Eastern Tropical Pacific (ETP) houses an oxygen minimum zone (OMZ) where pelagic denitrification proceeds as a result of both large scale circulation and regionally high export of organic matter that fuels oxygen consumption in the subsurface. Here we present a 2.4 million year long record of denitrification and productivity in the ETP using ODP Site 1242. Site 1242 is located ~70 km off the west coast of Costa Rica, beneath the OMZ. Downcore records of bulk sedimentary nitrogen isotope values (δ15N) and opal and organic matter accumulation rates show near synchronous increases in δ15N values and biogenic sediment accumulation at approximately 1.6 My. The concurrent increase in the denitrification and productivity proxies suggests that regional oxygen demand could be driving the increase in denitrification observed at Site 1242. This is in contrast to what is observed elsewhere, where export productivity and denitrification changes do not appear to be coupled locally. Moreover, the timing of this increase is distinct from a previously observed increase in δ15N at California Margin Site 1012 which occurred at ~2.1 Ma (Liu et al., G-cubed, 2008) and is also attributed to enhanced denitrification in the OMZ. These differences suggest that the Site 1242 record reflects a purely local or regional process. Interestingly, the later increase in denitrification at 1.6 Ma observed at Site 1242 does not appear to be restricted to the ETP, but rather shows similar timing to a δ15N shift in a site from the Arabian Sea OMZ (Muzuka et al., Proceedings of the ODP, 1991). The new data presented here will help in the development of a mechanistic understanding of relative roles of local and regional processes over global controls on intermediate water OMZ intensity.

Influence of plant communities on denitrification in a tidal freshwater marsh of the Potomac River, United States.

PubMed

Hopfensperger, Kristine N; Kaushal, Sujay S; Findlay, Stuart E G; Cornwell, Jeffrey C

2009-01-01

We investigated whether marsh surface elevation, plant community composition (annuals vs. perennials), and organic matter quantity/quality were associated with differences in denitrification rates in an urban tidal freshwater marsh of the Potomac River, United States. We measured denitrification rates using both denitrification enzyme activity (DEA) with acetylene inhibition (June: n = 38, 3234 +/- 303; October: n = 38, 1557 +/- 368 ng N g dry soil(-1) h(-1)) and direct N(2) flux measurements with membrane inlet mass spectrometry (MIMS) (November: n = 6, 147 +/- 24 mumol m(-2) h(-1)). Organic carbon content and nitrate concentrations in soil, and plant community composition were correlated with elevation, but DEA rates did not differ across marsh surface elevation. Soil organic carbon was highest in plots dominated by perennial graminoids, but DEA rates did not differ across plant community types. The DEA rates increased with increasing soil ammonium concentrations and total N content, and DEA rates differed between summer and fall sampling. The MIMS rates did not differ across plant community types, but were correlated with soil organic N content. Denitrification rates suggest that potential N removal at the site could be substantial. In addition, denitrification rates measured in Dyke Marsh were higher than rates for sediments measured in the adjacent Potomac River. Tidal freshwater marshes can represent an important site for denitrification, and factors fostering denitrification should be considered when restoring urban tidal freshwater wetlands as they are faced with pressures from increasing land use change and sea level rise.

Quantity-activity relationship of denitrifying bacteria and environmental scaling in streams of a forested watershed

USGS Publications Warehouse

O'Connor, B.L.; Hondzo, Miki; Dobraca, D.; LaPara, T.M.; Finlay, J.A.; Brezonik, P.L.

2006-01-01

The spatial variability of subreach denitrification rates in streams was evaluated with respect to controlling environmental conditions, molecular examination of denitrifying bacteria, and dimensional analysis. Denitrification activities ranged from 0 and 800 ng-N gsed-1 d-1 with large variations observed within short distances (<50 m) along stream reaches. A log-normal probability distribution described the range in denitrification activities and was used to define low (16% of the probability distributibn), medium (68%), and high (16%) denitrification potential groups. Denitrifying bacteria were quantified using a competitive polymerase chain reaction (cPCR) technique that amplified the nirK gene that encodes for nitrite reductase. Results showed a range of nirK quantities from 103 to 107 gene-copy-number gsed.-1 A nonparametric statistical test showed no significant difference in nirK quantifies among stream reaches, but revealed that samples with a high denitrification potential had significantly higher nirK quantities. Denitrification activity was positively correlated with nirK quantities with scatter in the data that can be attributed to varying environmental conditions along stream reaches. Dimensional analysis was used to evaluate denitrification activities according to environmental variables that describe fluid-flow properties, nitrate and organic material quantities, and dissolved oxygen flux. Buckingham's pi theorem was used to generate dimensionless groupings and field data were used to determine scaling parameters. The resulting expressions between dimensionless NO3- flux and dimensionless groupings of environmental variables showed consistent scaling, which indicates that the subreach variability in denitrification rates can be predicted by the controlling physical, chemical, and microbiological conditions. Copyright 2006 by the American Geophysical Union.

Exposure Time Distributions reveal Denitrification Rates along Groundwater Flow Path of an Agricultural Unconfined Aquifer

NASA Astrophysics Data System (ADS)

Kolbe, T.; Abbott, B. W.; Thomas, Z.; Labasque, T.; Aquilina, L.; Laverman, A.; Babey, T.; Marçais, J.; Fleckenstein, J. H.; Peiffer, S.; De Dreuzy, J. R.; Pinay, G.

2016-12-01

Groundwater contamination by nitrate is nearly ubiquitous in agricultural regions. Nitrate is highly mobile in groundwater and though it can be denitrified in the aquifer (reduced to inert N2 gas), this process requires the simultaneous occurrence of anoxia, an electron donor (e.g. organic carbon, pyrite), nitrate, and microorganisms capable of denitrification. In addition to this the ratio of the time groundwater spent in a denitrifying environment (exposure time) to the characteristic denitrification reaction time plays an important role, because denitrification can only occur if the exposure time is longer than the characteristic reaction time. Despite a long history of field studies and numerical models, it remains exceedingly difficult to measure or model exposure times in the subsurface at the catchment scale. To approach this problem, we developed a unified modelling approach combining measured environmental proxies with an exposure time based reactive transport model. We measured groundwater age, nitrogen and sulfur isotopes, and water chemistry from agricultural wells in an unconfined aquifer in Brittany, France, to quantify changes in nitrate concentration due to dilution and denitrification. Field data showed large differences in nitrate concentrations among wells, associated with differences in the exposure time distributions. By constraining a catchment-scale characteristic reaction time for denitrification with water chemistry proxies and exposure times, we were able to assess rates of denitrification along groundwater flow paths. This unified modeling approach is transferable to other catchments and could be further used to investigate how catchment structure and flow dynamics interact with biogeochemical processes such as denitrification.

Using soil isotopes as an indicator of site-specific to national-scale denitrification in wetlands

EPA Science Inventory

Denitrification is an anaerobic, microbial process that converts nitrate to inert dinitrogen (N2) gas and nitrous oxide (N2O), a potent greenhouse and ozone depleting gas. High rates of denitrification can be found in wetlands, resulting in the removal of large quantities of nitr...

Modeling denitrification in a tile-drained, corn and soybean agroecosystem of Illinois, USA

USDA-ARS?s Scientific Manuscript database

Denitrification is known as an important pathway for nitrate loss in agroecosystems. It is important to estimate denitrification fluxes to close field and watershed N mass balances, determine greenhouse gas emissions (N2O), and help constrain estimates of other major N fluxes (e.g., nitrate leaching...

Simultaneous heterotrophic and sulfur-oxidizing autotrophic denitrification process for drinking water treatment: control of sulfate production.

PubMed

Sahinkaya, Erkan; Dursun, Nesrin; Kilic, Adem; Demirel, Sevgi; Uyanik, Sinan; Cinar, Ozer

2011-12-15

A long-term performance of a packed-bed bioreactor containing sulfur and limestone was evaluated for the denitrification of drinking water. Autotrophic denitrification rate was limited by the slow dissolution rate of sulfur and limestone. Dissolution of limestone for alkalinity supplementation increased hardness due to release of Ca(2+). Sulfate production is the main disadvantage of the sulfur autotrophic denitrification process. The effluent sulfate concentration was reduced to values below drinking water guidelines by stimulating the simultaneous heterotrophic and autotrophic denitrification with methanol supplementation. Complete removal of 75 mg/L NO(3)-N with effluent sulfate concentration of around 225 mg/L was achieved when methanol was supplemented at methanol/NO(3)-N ratio of 1.67 (mg/mg), which was much lower than the theoretical value of 2.47 for heterotrophic denitrification. Batch studies showed that sulfur-based autotrophic NO(2)-N reduction rate was around three times lower than the reduction rate of NO(3)-N, which led to NO(2)-N accumulation at high loadings. Copyright © 2011 Elsevier Ltd. All rights reserved.

Exploring the Denitrification Proteome of Paracoccus denitrificans PD1222

PubMed Central

Olaya-Abril, Alfonso; Hidalgo-Carrillo, Jesús; Luque-Almagro, Víctor M.; Fuentes-Almagro, Carlos; Urbano, Francisco J.; Moreno-Vivián, Conrado; Richardson, David J.; Roldán, María D.

2018-01-01

Denitrification is a respiratory process that produces nitrous oxide as an intermediate, which may escape to the atmosphere before its reduction to dinitrogen through the nitrous oxide reductase NosZ. In this work, the denitrification process carried out by Paracoccus denitrificans PD1222 has been explored through a quantitative proteomic analysis. Under anaerobic conditions, with nitrate as sole nitrogen source, the synthesis of all the enzymes involved in denitrification, the respiratory nitrate, nitrite, nitric oxide, and nitrous oxide reductases, was increased. However, the periplasmic and assimilatory nitrate reductases decreased. Synthesis of transporters for alcohols, D-methionine, sulfate and copper, most of the enzymes involved in the tricarboxylic acid cycle, and proteins involved in other metabolic processes like lysine catabolism, fatty acids degradation and acetyl-CoA synthesis, was increased during denitrification in P. denitrificans PD1222. As consequence, an enhanced production of the central metabolite acetyl-CoA was observed. After establishing the key features of the denitrification proteome, its changes by the influence of a competitive electron acceptor, oxygen, or competitive nitrogen source, ammonium, were evaluated. PMID:29896187

Exploring the Denitrification Proteome of Paracoccus denitrificans PD1222.

PubMed

Olaya-Abril, Alfonso; Hidalgo-Carrillo, Jesús; Luque-Almagro, Víctor M; Fuentes-Almagro, Carlos; Urbano, Francisco J; Moreno-Vivián, Conrado; Richardson, David J; Roldán, María D

2018-01-01

Denitrification is a respiratory process that produces nitrous oxide as an intermediate, which may escape to the atmosphere before its reduction to dinitrogen through the nitrous oxide reductase NosZ. In this work, the denitrification process carried out by Paracoccus denitrificans PD1222 has been explored through a quantitative proteomic analysis. Under anaerobic conditions, with nitrate as sole nitrogen source, the synthesis of all the enzymes involved in denitrification, the respiratory nitrate, nitrite, nitric oxide, and nitrous oxide reductases, was increased. However, the periplasmic and assimilatory nitrate reductases decreased. Synthesis of transporters for alcohols, D-methionine, sulfate and copper, most of the enzymes involved in the tricarboxylic acid cycle, and proteins involved in other metabolic processes like lysine catabolism, fatty acids degradation and acetyl-CoA synthesis, was increased during denitrification in P. denitrificans PD1222. As consequence, an enhanced production of the central metabolite acetyl-CoA was observed. After establishing the key features of the denitrification proteome, its changes by the influence of a competitive electron acceptor, oxygen, or competitive nitrogen source, ammonium, were evaluated.

[Inhibition of Denitrification by Total Phenol Load of Coal Gasification Wastewater].

PubMed

Zhang, Yu-ying; Chen, Xiu-rong; Wang, Lu; Li, Jia-hui; Xu, Yan; Zhuang, You-jun; Yu, Ze-ya

2016-03-15

High loaded phenolic pollutants, refractory and high toxic, which existed in coal gasification wastewater, could cause the inhibition of sludge activity. In biological denitrification process of activated sludge treatment system, people tend to focus on the phenol inhibition on the efficiency and activity of nitrifying bacteria while there are few researches on the denitrification process. In order to investigate the inhibition of phenolic compounds from coal gasification wastewater on the denitrification and sludge activity, we used anoxic denitrification system to indentify the influence of different phenol load on denitrification efficiency (removal efficiency of NO₃⁻-N and NO₂⁻-N) as well as the stress and degradation activity of sludge. The results showed that when the concentration of total phenol was changed from 50 mg · L⁻¹ to 200 mg · L⁻¹, the removal rates of NO₃⁻-N and NO₂⁻-N were changed from 55% and 25% to 83% and 83% respectively. In the process of sludge domestication, the characteristics of denitrifying sludge were influenced to a certain degree.

Denitrification synergized with ANAMMOX for the anaerobic degradation of benzene: performance and microbial community structure.

PubMed

Peng, Shuchan; Zhang, Lilan; Zhang, DaiJun; Lu, Peili; Zhang, Xiaoting; He, Qiang

2017-05-01

To evaluate the effect of anaerobic ammonium oxidation (ANAMMOX) on benzene degradation under denitrification, a sequencing batch reactor (SBR) under denitrification synergized with ANAMMOX (SBR-DenAna) for benzene degradation was established by inoculating anaerobic ammonium-oxidizing bacteria (AnAOB) into a SBR under denitrification reactor (SBR-Den) for benzene degradation. The average rate of benzene degradation and the maximum first-order kinetic constant in SBR-DenAna were 2.34- and 1.41-fold those in SBR-Den, respectively, indicating that ANAMMOX improved the degradation of benzene under denitrification synergized with ANAMMOX. However, the average rate of benzene degradation decreased by 35% in the denitrification-ANAMMOX synergistic reactor when 10 mg N L -1 NO 2 - was added; the rate recovered once NO 2 - was depleted, indicating that ANAMMOX might detoxify NO 2 - . Results from high-throughput sequencing analysis revealed that Azoarcus within the family Rhodocyclaceae might be associated with benzene degradation in the two SBRs. AnAOB affiliated with the family Candidatus Brocadiaceae were just detected in SBR-DenAna.

Use of bioreactor landfill for nitrogen removal to enhance methane production through ex situ simultaneous nitrification-denitrification and in situ denitrification.

PubMed

Sun, Xiaojie; Zhang, Hongxia; Cheng, Zhaowen

2017-08-01

High concentrations of nitrate-nitrogen (NO 3 - -N) derived from ex situ nitrification phase can inhibit methane production during ex situ nitrification and in situ denitrification bioreactor landfill. A combined process comprised of ex situ simultaneous nitrification-denitrification (SND) in an aged refuse bioreactor (ARB) and in situ denitrification in a fresh refuse bioreactor (FRB) was conducted to reduce the negative effect of high concentrationsof NO 3 - -N. Ex situ SND can be achieved because NO 3 - -N concentration can be reduced and the removal rate of ammonium-nitrogen (NH 4 + -N) remains largely unchanged when the ventilation rate of ARB-A2 is controlled. The average NO 3 - -N concentrations of effluent were 470mg/L in ex situ nitrification ARB-A1 and 186mg/L in ex situ SND ARB-A2. The average NH 4 + -N removal rates of ARB-A1 and ARB-A2 were 98% and 94%, respectively. Based on the experimental data from week 4 to week 30, it is predicted that NH 4 + -N concentration in FRB-F1 of the ex situ nitrification and in situ denitrification process would reach 25mg/L after 63weeks, and about 40weeks for the FRB-F2 of ex situ SND and in situ denitrification process . Ex situ SND and in situ denitrification process can improve themethane production of FRB-F2. The lag phase time of methane production for the FRB-F2 was 11weeks. This phase was significantly shorter than the 15-week phases of FRB-F1 in ex situ nitrification and in situ denitrification process. A seven-week stabilizationphase was required to increase methane content from 5% to 50% for FRB-F2. Methane content in FRB-F1 did not reach 50% but reached the 45% peak after 20weeks. Copyright © 2017 Elsevier Ltd. All rights reserved.

Assessment of denitrification gaseous end-products in the soil profile under two water table management practices using repeated measures analysis.

PubMed

Elmi, Abdirashid A; Astatkie, Tess; Madramootoo, Chandra; Gordon, Robert; Burton, David

2005-01-01

The denitrification process and nitrous oxide (N2O) production in the soil profile are poorly documented because most research into denitrification has concentrated on the upper soil layer (0-0.15 m). This study, undertaken during the 1999 and 2000 growing seasons, was designed to examine the effects of water table management (WTM), nitrogen (N) application rate, and depth (0.15, 0.30, and 0.45 m) on soil denitrification end-products (N2O and N2) from a corn (Zea mays L.) field. Water table management treatments were free drainage (FD) with open drains and subirrigation (SI) with a target water table depth of 0.6 m. Fertility treatments (ammonium nitrate) were 120 kg N ha(-1) (N120) and 200 kg N ha(-1) (N200). During both growing seasons greater denitrification rates were measured in SI than in FD, particularly in the surface soil (0-0.15 m) and at the intermediate (0.15-0.30 m) soil depths under N200 treatment. Greater denitrification rates under the SI treatment, however, were not accompanied with greater N2O production. The decrease in N2O production under SI was probably caused by a more complete reduction of N2O to N2, which resulted in lower N2O to (N2O + N2) ratios. Denitrification rate, N2O production and N2O to (N2O + N2) ratios were only minimally affected by N treatments, irrespective of sampling date and soil depth. Overall, half of the denitrification occurred at the 0.15- to 0.30- and 0.30- to 0.45-m soil layers, and under SI, regardless of fertility treatment level. Consequently, sampling of the 0- to 0.15-m soil layer alone may not give an accurate estimation of denitrification losses under SI practice.

Effects of multiple antibiotics exposure on denitrification process in the Yangtze Estuary sediments.

PubMed

Yin, Guoyu; Hou, Lijun; Liu, Min; Zheng, Yanling; Li, Xiaofei; Lin, Xianbiao; Gao, Juan; Jiang, Xiaofen; Wang, Rong; Yu, Chendi

2017-03-01

Denitrification is a dominant reactive nitrogen removal pathway in most estuarine and coastal ecosystems, and plays a significant role in regulating N 2 O release. Although multiple antibiotics residues are widely detected in aquatic environment, combined effects of antibiotics on denitrification remain indistinct. In this work, 5 classes of antibiotics (sulfonamides, chloramphenicols, tetracyclines, macrolides, and fluoroquinolones) were selected to conduct orthogonal experiments in order to explore their combined effects on denitrification. 15 N-based denitrification and N 2 O release rates were determined in the orthogonal experiments, while denitrifying functional genes were examined to illustrate the microbial mechanism of the combined antibiotics effect. Denitrification rates were inhibited by antibiotics treatments, and synergistic inhibition effect was observed for multiple antibiotics exposure. Different classes of antibiotics had different influence on N 2 O release rates, but multiple antibiotics exposure mostly led to stimulatory effect. Abundances of denitrifying functional genes were inhibited by multiple antibiotics exposure due to the antimicrobial properties, and different inhibition on denitrifiers may be the major mechanism for the variations of N 2 O release rates. Combined effects of antibiotics on denitrification may lead to nitrate retention and N 2 O release in estuarine and coastal ecosystems, and consequently cause cascading environmental problems, such as greenhouse effects and hyper-eutrophication. Copyright © 2016 Elsevier Ltd. All rights reserved.

Limited denitrification in glacial deposit aquifers having thick unsaturated zones (Long Island, USA)

USGS Publications Warehouse

Young, Caitlin; Kroeger, Kevin D.; Hanson, Gilbert

2013-01-01

The goal of this study was to demonstrate how the extent of denitrification, which is indirectly related to dissolved organ carbon and directly related to oxygen concentrations, can also be linked to unsaturated-zone thickness, a mappable aquifer property. Groundwater from public supply and monitoring wells in Northport on Long Island, New York state (USA), were analyzed for denitrification reaction progress using dissolved N2/Ar concentrations by membrane inlet mass spectrometry. This technique allows for discernment of small amounts of excess N2, attributable to denitrification. Results show an average 15 % of total nitrogen in the system was denitrified, significantly lower than model predictions of 35 % denitrification. The minimal denitrification is due to low dissolved organic carbon (29.3–41.1 μmol L−1) and high dissolved oxygen concentrations (58–100 % oxygen saturation) in glacial sediments with minimal solid-phase electron donors to drive denitrification. A mechanism is proposed that combines two known processes for aquifer re-aeration in unconsolidated sands with thick (>10 m) unsaturated zones. First, advective flux provides 50 % freshening of pore space oxygen in the upper 2 m due to barometric pressure changes. Then, oxygen diffusion across the water-table boundary occurs due to high volumetric air content in the unsaturated-zone catchment area.

Modeling nitrous oxide production during biological nitrogen removal via nitrification and denitrification: extensions to the general ASM models.

PubMed

Ni, Bing-Jie; Ruscalleda, Maël; Pellicer-Nàcher, Carles; Smets, Barth F

2011-09-15

Nitrous oxide (N(2)O) can be formed during biological nitrogen (N) removal processes. In this work, a mathematical model is developed that describes N(2)O production and consumption during activated sludge nitrification and denitrification. The well-known ASM process models are extended to capture N(2)O dynamics during both nitrification and denitrification in biological N removal. Six additional processes and three additional reactants, all involved in known biochemical reactions, have been added. The validity and applicability of the model is demonstrated by comparing simulations with experimental data on N(2)O production from four different mixed culture nitrification and denitrification reactor study reports. Modeling results confirm that hydroxylamine oxidation by ammonium oxidizers (AOB) occurs 10 times slower when NO(2)(-) participates as final electron acceptor compared to the oxic pathway. Among the four denitrification steps, the last one (N(2)O reduction to N(2)) seems to be inhibited first when O(2) is present. Overall, N(2)O production can account for 0.1-25% of the consumed N in different nitrification and denitrification systems, which can be well simulated by the proposed model. In conclusion, we provide a modeling structure, which adequately captures N(2)O dynamics in autotrophic nitrification and heterotrophic denitrification driven biological N removal processes and which can form the basis for ongoing refinements.

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments.

PubMed

Canion, Andy; Overholt, Will A; Kostka, Joel E; Huettel, Markus; Lavik, Gaute; Kuypers, Marcel M M

2014-10-01

The temperature dependency of denitrification and anaerobic ammonium oxidation (anammox) rates from Arctic fjord sediments was investigated in a temperature gradient block incubator for temperatures ranging from -1 to 40°C. Community structure in intact sediments and slurry incubations was determined using Illumina SSU rRNA gene sequencing. The optimal temperature (Topt ) for denitrification was 25-27°C, whereas anammox rates were optimal at 12-17°C. Both denitrification and anammox exhibited temperature responses consistent with a psychrophilic community, but anammox bacteria may be more specialized for psychrophilic activity. Long-term (1-2 months) warming experiments indicated that temperature increases of 5-10°C above in situ had little effect on the microbial community structure or the temperature response of denitrification and anammox. Increases of 25°C shifted denitrification temperature responses to mesophilic with concurrent community shifts, and anammox activity was eliminated above 25°C. Additions of low molecular weight organic substrates (acetate and lactate) caused increases in denitrification rates, corroborating the hypothesis that the supply of organic substrates is a more dominant control of respiration rates than low temperature. These results suggest that climate-related changes in sinking particulate flux will likely alter rates of N removal more rapidly than warming. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

A network biology approach to denitrification in Pseudomonas aeruginosa

DOE PAGES

Arat, Seda; Bullerjahn, George S.; Laubenbacher, Reinhard

2015-02-23

Pseudomonas aeruginosa is a metabolically flexible member of the Gammaproteobacteria. Under anaerobic conditions and the presence of nitrate, P. aeruginosa can perform (complete) denitrification, a respiratory process of dissimilatory nitrate reduction to nitrogen gas via nitrite (NO₂), nitric oxide (NO) and nitrous oxide (N₂O). This study focuses on understanding the influence of environmental conditions on bacterial denitrification performance, using a mathematical model of a metabolic network in P. aeruginosa. To our knowledge, this is the first mathematical model of denitrification for this bacterium. Analysis of the long-term behavior of the network under changing concentration levels of oxygen (O₂), nitrate (NO₃),more » and phosphate (PO₄) suggests that PO₄ concentration strongly affects denitrification performance. The model provides three predictions on denitrification activity of P. aeruginosa under various environmental conditions, and these predictions are either experimentally validated or supported by pertinent biological literature. One motivation for this study is to capture the effect of PO₄ on a denitrification metabolic network of P. aeruginosa in order to shed light on mechanisms for greenhouse gas N₂O accumulation during seasonal oxygen depletion in aquatic environments such as Lake Erie (Laurentian Great Lakes, USA). Simulating the microbial production of greenhouse gases in anaerobic aquatic systems such as Lake Erie allows a deeper understanding of the contributing environmental effects that will inform studies on, and remediation strategies for, other hypoxic sites worldwide.« less

Temperature coefficient for modeling denitrification in surface water sediments using the mass transfer coefficient

Treesearch

T.W. Appelboom; G.M. Chescheir; F. Birgand; R.W. Skaggs; J.W. Gilliam; D. Amatya

2010-01-01

Watershed modeling has become an important tool for researchers. Modeling nitrate transport within drainage networks requires quantifying the denitrification within the sediments in canals and streams. In a previous study, several of the authors developed an equation using a term called a mass transfer coefficient to mathematically describe sediment denitrification....

Temperature coefficient for modeling denitrification in surface water sediments using the mass transfer coefficient.

Treesearch

T.W. Appelboom; G.M. Chescheir; F. Birgand; R.W. Skaggs; J.W. Gilliam; D. Amatya

2010-01-01

Watershed modeling has become an important tool for researchers. Modeling nitrate transport within drainage networks requires quantifying the denitrification within the sediments in canals and streams. In a previous study, several of the authors developed an equation using a term called a mass transfer coefficient to mathematically describe sediment denitrification....

Development of a method for in situ measurement of denitrification in aquifers using 15N tracer tests and membrane inlet mass spectrometry

NASA Astrophysics Data System (ADS)

Eschenbach, W.; Well, R.; Flessa, H.; Walther, W.; Duijnisveld, W. H. M.

2009-04-01

In NO3- contaminated aquifers containing reduced compounds like organic carbon or sulfides, denitrification is an intense process. Its characterization is of interest because NO3- consump-tion improves water quality and N2O production can cause emission of this greenhouse gas to the atmosphere. Spatial distribution of NO3- and N2 produced by denitrification in groundwa-ter (excess N2) reflects the NO3- input as well as cumulative denitrification during aquifer pas-sage. Reaction progress (RP) at a given location, i.e. the relative consumption by denitrifica-tion of the NO3- that had been leached to the aquifers, characterizes the stage of the denitrifi-cation process. RP can be derived from the ratio between accumulated gaseous denitrification products and initial NO3- concentrations. The amount and spatial distribution of reduced com-pounds within denitrifying aquifers is not well known. Recent findings from parallel investi-gations on in situ denitrification and reactive compounds suggests that single-well 15N tracer tests might be suitable to characterize the stock of reduced compounds in aquifers (Konrad 2007). The overall objective of our studies is measure the spatial dynamics of denitrification within two sandy aquifers in northern Germany. This includes measurement of the actually occurring denitrification process. Moreover we want to determine the long-term denitrification potential which is governed by the stock of reactive material. Here we present a new approach for in situ-measurement of denitrification at monitoring wells using a combination of 15N-tracer push-pull experiments with in situ analysis of 15N-labled N2 and N2O using membrane inlet mass spectrometry (MIMS). We will present first results from a laboratory test with aquifer mesocosms using the MIMS method. In this test we supplemented aquifer material of two depths (2 and 7 m below surface) of a drinking water catchment in Northwest Germany with K15NO3 solution. After tracer application we took wa-ter samples at regular intervals with an automated sampling device over 5 days. A small part of the sample was directly conducted in the membrane inlet of our mass spectrometer and the other part was collected in serum bottles which were immediately sealed with rubber septa and stored for later measurement by isotope ratio mass spectrometer (IRMS). Results available up to now showed for both types of measurement a linear increase of deni-trification products (15(N2O+N2)) over time. At the end of our laboratory test we measured up to 270 and 2400 µg/L 15(N2O+N2) in the water samples from the supplemented aquifer mate-rial of 3 and 7 m depth respectively. Because of the online measurement with MIMS we were able to see during the experiment if and when the production of the labeled denitrification products started. Later-on this approach will be used in the field. Here, the MIMS-technique will be especially advantageous, because the success of tracer test can be immediately seen during in situ sampling. Results of excess-N2 measurements at the monitoring wells within the two aquifers showed a range of 0 to 30 mg L-1 excess-N2 and a RP between 0 and 100%. References: Konrad, C. (2007): Methoden zur Bestimmung des Umsatzes von Stickstoff, dargestellt für drei Pleistozäne Grundwasserleiter Norddeutschlands, PhD thesis, Dresden Univ. of Techn., Germany, 157 pp.

Controls on Mixing-Dependent Denitrification in Hyporheic Zones

NASA Astrophysics Data System (ADS)

Hester, E. T.; Young, K. I.; Widdowson, M. A.

2013-12-01

Interaction of surface water and groundwater in hyporheic sediments of river systems is known to create unique biogeochemical conditions that can attenuate contaminants flowing downstream. Oxygen, carbon, and the contaminants themselves (e.g., excess nitrate) often advect together through the hyporheic zone from sources in surface water. However, the ability of the hyporheic zone to attenuate contaminants in upwelling groundwater plumes as they exit to rivers is less known. Such reactions may be more dependent on mixing of carbon and oxygen sources from surface water with contaminants from deeper groundwater. We simulated hyporheic flow cells and upwelling groundwater together with mixing-dependent denitrification of an upwelling nitrate plume in shallow riverbed sediments using MODFLOW and SEAM3D. For our first set of model scenarios, we set biogeochemical boundary conditions to be consistent with situations where only mixing-dependent denitrification occurred within the model domain. This occurred where dissolved organic carbon (DOC) advecting from surface water through hyporheic flow cells meets nitrate upwelling from deeper groundwater. This would be common where groundwater is affected by septic systems which contribute nitrate that upwells into streams that do not have significant nitrate sources from upstream. We conducted a sensitivity analysis that showed that mixing-dependent denitrification increased with parameters that increase mixing itself, such as the degree of heterogeneity of sediment hydraulic conductivity (K). Mixing-dependent denitrification also increased with certain biogeochemical boundary concentrations such as increasing DOC or decreasing dissolved oxygen (DO) advecting from surface water. For our second set of model scenarios, we set biogeochemical boundary conditions to be consistent with common situations where non-mixing-dependent denitrification also occurred within the model domain. For example, when nitrate concentrations are substantial in water advecting from surface water, non-mixing-dependent denitrification can occur within the hyporheic flow cells. This would be common where surface water and groundwater have high nitrate concentrations in agricultural areas. We conducted a sensitivity analysis for this set of model scenarios as well, to evaluate controls on the relative balance of mixing-dependent and non-mixing-dependent denitrification. We found that non-mixing-dependent denitrification often has higher potential to consume nitrate than mixing-dependent denitrification. This is because non-mixing-dependent denitrification is not confined to the relatively small mixing zone between upwelling groundwater and hyporheic flow cells, and hence often has longer residence times available for consumption of existing oxygen followed by consumption of nitrate. Nevertheless, the potential for hyporheic zones to attenuate upwelling nitrate plumes appears to be substantial, yet is variable depending on geomorphic, hydraulic, and biogeochemical conditions.

Optimization and evaluation of a bottom substrate denitrification tank for nitrate removal from a recirculating aquaculture system.

PubMed

Pungrasmi, Wiboonluk; Playchoom, Cholticha; Powtongsook, Sorawit

2013-08-01

A bottom substrate denitrification tank for a recirculating aquaculture system was developed. The laboratory scale denitrification tank was an 8 L tank (0.04 m2 tank surface area), packed to a depth of 5 cm with a bottom substrate for natural denitrifying bacteria. An aquarium pump was used for gentle water mixing in the tank; the dissolved oxygen in the water was maintained in aerobic conditions (e.g. > 2 mg/L) while anoxic conditions predominated only at the bottom substrate layer. The results showed that, among the four substrates tested (soil, sand, pumice stone and vermiculite), pumice was the most preferable material. Comparing carbon supplementation using methanol and molasses, methanol was chosen as the carbon source because it provided a higher denitrification rate than molasses. When methanol was applied at the optimal COD:N ratio of 5:1, a nitrate removal rate of 4591 +/- 133 mg-N/m2 tank bottom area/day was achieved. Finally, nitrate removal using an 80 L denitrification tank was evaluated with a 610 L recirculating tilapia culture system. Nitrate treatment was performed by batch transferring high nitrate water from the nitrification tank into the denitrification tank and mixing with methanol at a COD:N ratio of 5:1. The results from five batches of nitrate treatment revealed that nitrate was successfully removed from water without the accumulation of nitrite and ammonia. The average nitrate removal efficiency was 85.17% and the average denitrification rate of the denitrification tank was 6311 +/- 945 mg-N/m2 tank bottom area/day or 126 +/- 18 mg-N/L of pumice packing volume/day.

Analysis of Antarctic Denitrification in 2003 Winter Observed by ILAS-II Onboard the ADEOS-II Satellite

NASA Astrophysics Data System (ADS)

Nakajima, H.; Saeki, K.; Sugita, T.

2005-12-01

Polar Stratospheric Clouds (PSC) play an important role in ozone destruction in both Arctic and Antarctic stratosphere in winter. They take up gas-phase nitric acid (HNO3) and grow up when temperature is below nitric acid saturation temperature (TNAT). When PSC becomes large, it starts to descend and nitric acid is removed from the air mass, resulting in denitrification. The Improved Limb Atmospheric Spectrometer-II (ILAS-II) onboard the Advanced Earth Observing Satellite-II (ADEOS-II) successfully made measurements for the whole Antarctic winter in 2003. ILAS-II measured vertical profiles of O3, HNO3, NO2, H2O, N2O, CH4, ClONO2, N2O5, etc. in addition to the aerosol extinction coefficients at 780 nm. In this study, we analyzed denitrification from ILAS-II HNO3 and N2O data in regard to temperature history on the trajectory. The quantity of denitrification was estimated from the difference between measured HNO3 and HNO3* assumed from HNO3-- N2O correlation. In this analysis, it was found that denitrification was observed only for those airmass that experienced temperature below TICE (ice saturation temperature) in late June, 2003. In late July, it was found that most airmass inside the polar vortex was denitrified regardless of temperature history. This suggests that permanent denitrification has occurred in June-July period. The transition of relationship between denitrification and airmass temperature history was discovered from the ILAS-II data. Also, major types of PSC have found to be changed from nitric acid trihydrate (NAT) in June to ice in July, from the ILAS-II data. This is considered to be due to the lack of nitric acid in the airmass due to the denitrification in July.

Denitrification in Agriculturally Impacted Streams: Seasonal Changes in Structure and Function of the Bacterial Community

PubMed Central

Manis, Erin; Royer, Todd V.; Johnson, Laura T.; Leff, Laura G.

2014-01-01

Denitrifiers remove fixed nitrogen from aquatic environments and hydrologic conditions are one potential driver of denitrification rate and denitrifier community composition. In this study, two agriculturally impacted streams in the Sugar Creek watershed in Indiana, USA with different hydrologic regimes were examined; one stream is seasonally ephemeral because of its source (tile drainage), whereas the other stream has permanent flow. Additionally, a simulated flooding experiment was performed on the riparian benches of the ephemeral stream during a dry period. Denitrification activity was assayed using the chloramphenicol amended acetylene block method and bacterial communities were examined based on quantitative PCR and terminal restriction length polymorphisms of the nitrous oxide reductase (nosZ) and 16S rRNA genes. In the stream channel, hydrology had a substantial impact on denitrification rates, likely by significantly lowering water potential in sediments. Clear patterns in denitrification rates were observed among pre-drying, dry, and post-drying dates; however, a less clear scenario was apparent when analyzing bacterial community structure suggesting that denitrifier community structure and denitrification rate were not strongly coupled. This implies that the nature of the response to short-term hydrologic changes was physiological rather than increases in abundance of denitrifiers or changes in composition of the denitrifier community. Flooding of riparian bench soils had a short-term, transient effect on denitrification rate. Our results imply that brief flooding of riparian zones is unlikely to contribute substantially to removal of nitrate (NO3 -) and that seasonal drying of stream channels has a negative impact on NO3 - removal, particularly because of the time lag required for denitrification to rebound. This time lag is presumably attributable to the time required for the denitrifiers to respond physiologically rather than a change in abundance or community composition. PMID:25171209

Oxygen at Nanomolar Levels Reversibly Suppresses Process Rates and Gene Expression in Anammox and Denitrification in the Oxygen Minimum Zone off Northern Chile

PubMed Central

Stewart, Frank J.; Thamdrup, Bo; De Brabandere, Loreto; Revsbech, Niels Peter; Ulloa, Osvaldo; Canfield, Don E.; DeLong, Edward F.

2014-01-01

ABSTRACT A major percentage (20 to 40%) of global marine fixed-nitrogen loss occurs in oxygen minimum zones (OMZs). Concentrations of O2 and the sensitivity of the anaerobic N2-producing processes of anammox and denitrification determine where this loss occurs. We studied experimentally how O2 at nanomolar levels affects anammox and denitrification rates and the transcription of nitrogen cycle genes in the anoxic OMZ off Chile. Rates of anammox and denitrification were reversibly suppressed, most likely at the enzyme level. Fifty percent inhibition of N2 and N2O production by denitrification was achieved at 205 and 297 nM O2, respectively, whereas anammox was 50% inhibited at 886 nM O2. Coupled metatranscriptomic analysis revealed that transcripts encoding nitrous oxide reductase (nosZ), nitrite reductase (nirS), and nitric oxide reductase (norB) decreased in relative abundance above 200 nM O2. This O2 concentration did not suppress the transcription of other dissimilatory nitrogen cycle genes, including nitrate reductase (narG), hydrazine oxidoreductase (hzo), and nitrite reductase (nirK). However, taxonomic characterization of transcripts suggested inhibition of narG transcription in gammaproteobacteria, whereas the transcription of anammox narG, whose gene product is likely used to oxidatively replenish electrons for carbon fixation, was not inhibited. The taxonomic composition of transcripts differed among denitrification enzymes, suggesting that distinct groups of microorganisms mediate different steps of denitrification. Sulfide addition (1 µM) did not affect anammox or O2 inhibition kinetics but strongly stimulated N2O production by denitrification. These results identify new O2 thresholds for delimiting marine nitrogen loss and highlight the utility of integrating biogeochemical and metatranscriptomic analyses. PMID:25352619

Isotopic signals of summer denitrification in a northern hardwood forested catchment.

PubMed

Wexler, Sarah K; Goodale, Christine L; McGuire, Kevin J; Bailey, Scott W; Groffman, Peter M

2014-11-18

Despite decades of measurements, the nitrogen balance of temperate forest catchments remains poorly understood. Atmospheric nitrogen deposition often greatly exceeds streamwater nitrogen losses; the fate of the remaining nitrogen is highly uncertain. Gaseous losses of nitrogen to denitrification are especially poorly documented and are often ignored. Here, we provide isotopic evidence (δ(15)NNO3 and δ(18)ONO3) from shallow groundwater at the Hubbard Brook Experimental Forest indicating extensive denitrification during midsummer, when transient, perched patches of saturation developed in hillslopes, with poor hydrological connectivity to the stream, while streamwater showed no isotopic evidence of denitrification. During small rain events, precipitation directly contributed up to 34% of streamwater nitrate, which was otherwise produced by nitrification. Together, these measurements reveal the importance of denitrification in hydrologically disconnected patches of shallow groundwater during midsummer as largely overlooked control points for nitrogen loss from temperate forest catchments.

Isotopic signals of summer denitrification in a northern hardwood forested catchment

PubMed Central

Wexler, Sarah K.; Goodale, Christine L.; Bailey, Scott W.; Groffman, Peter M.

2014-01-01

Despite decades of measurements, the nitrogen balance of temperate forest catchments remains poorly understood. Atmospheric nitrogen deposition often greatly exceeds streamwater nitrogen losses; the fate of the remaining nitrogen is highly uncertain. Gaseous losses of nitrogen to denitrification are especially poorly documented and are often ignored. Here, we provide isotopic evidence (δ15NNO3 and δ18ONO3) from shallow groundwater at the Hubbard Brook Experimental Forest indicating extensive denitrification during midsummer, when transient, perched patches of saturation developed in hillslopes, with poor hydrological connectivity to the stream, while streamwater showed no isotopic evidence of denitrification. During small rain events, precipitation directly contributed up to 34% of streamwater nitrate, which was otherwise produced by nitrification. Together, these measurements reveal the importance of denitrification in hydrologically disconnected patches of shallow groundwater during midsummer as largely overlooked control points for nitrogen loss from temperate forest catchments. PMID:25368188

The development and application of SCR denitrification technology in power plant

NASA Astrophysics Data System (ADS)

Wu, Junnan

2017-12-01

In recent decades, the emission of the nitrogen oxides (NOX) has been increasing with the years of the thermal power plant. The environment pollution caused by the emission of quantities of nitrogen oxides became more and more serious, so people now put more emphasis on the control of the emission of the nitrogen oxides. Especially, our country and the society are paying much more attention to the environment protection and the environment problems cannot be neglected. In this paper, we introduced the related research background of the technology of SCR denitrification which was as the symbol of the technology of the catalytic denitrification and discussed the reaction principles of the SCR denitrification and frequently used catalysts, the process of the technology, and the configuration. In the end, we pointed the way of the future research of the technology of the SCR denitrification.

Meiofauna increases bacterial denitrification in marine sediments.

PubMed

Bonaglia, S; Nascimento, F J A; Bartoli, M; Klawonn, I; Brüchert, V

2014-10-16

Denitrification is a critical process that can alleviate the effects of excessive nitrogen availability in aquatic ecosystems subject to eutrophication. An important part of denitrification occurs in benthic systems where bioturbation by meiofauna (invertebrates <1 mm) and its effect on element cycling are still not well understood. Here we study the quantitative impact of meiofauna populations of different abundance and diversity, in the presence and absence of macrofauna, on nitrate reduction, carbon mineralization and methane fluxes. In sediments with abundant and diverse meiofauna, denitrification is double that in sediments with low meiofauna, suggesting that meiofauna bioturbation has a stimulating effect on nitrifying and denitrifying bacteria. However, high meiofauna densities in the presence of bivalves do not stimulate denitrification, while dissimilatory nitrate reduction to ammonium rate and methane efflux are significantly enhanced. We demonstrate that the ecological interactions between meio-, macrofauna and bacteria are important in regulating nitrogen cycling in soft-sediment ecosystems.

First evidence of denitrification vis-à-vis monsoon in the Arabian Sea since Late Miocene.

PubMed

Tripathi, Shubham; Tiwari, Manish; Lee, Jongmin; Khim, Boo-Keun

2017-02-21

In the Arabian Sea, South Asian monsoon (SAM)-induced high surface water productivity coupled with poor ventilation of intermediate water results in strong denitrification within the oxygen minimum zone (OMZ). Despite the significance of denitrification in the Arabian Sea, we have no long-term record of its evolution spanning the past several million years. Here, we present the first record of denitrification evolution since Late Miocene (~10.2 Ma) in the Eastern Arabian Sea, where the SAM generates moderate surface water productivity, based on the samples retrieved during the International Ocean Discovery Program (IODP) Expedition 355. We find that (i) the SAM was persistently weaker from ~10.2 to 3.1 Ma; it did not intensify at ~8 Ma in contrast to a few previous studies, (ii) on tectonic timescale, both the SAM and the East Asian Monsoon (EAM) varied synchronously, (iii) the first evidence of denitrification and productivity/SAM intensification was at ~3.2-2.8 Ma that coincided with Mid-Pliocene Warm Period (MPWP), and (iv) the modern strength of the OMZ where denitrification is a permanent feature was attained at ~1.0 Ma.

First evidence of denitrification vis-à-vis monsoon in the Arabian Sea since Late Miocene

NASA Astrophysics Data System (ADS)

Tripathi, Shubham; Tiwari, Manish; Lee, Jongmin; Khim, Boo-Keun; Pandey, Dhananjai K.; Clift, Peter D.; Kulhanek, Denise K.; Andò, Sergio; Bendle, James A. P.; Aharonovich, Sophia; Griffith, Elizabeth M.; Gurumurthy, Gundiga P.; Hahn, Annette; Iwai, Masao; Kumar, Anil; Kumar, A. Ganesh; Liddy, Hannah M.; Lu, Huayu; Lyle, Mitchell W.; Mishra, Ravi; Radhakrishna, Tallavajhala; Routledge, Claire M.; Saraswat, Rajeev; Saxena, Rakesh; Scardia, Giancarlo; Sharma, Girish K.; Singh, Arun D.; Steinke, Stephan; Suzuki, Kenta; Tauxe, Lisa; Xu, Zhaokai; Yu, Zhaojie

2017-02-01

In the Arabian Sea, South Asian monsoon (SAM)-induced high surface water productivity coupled with poor ventilation of intermediate water results in strong denitrification within the oxygen minimum zone (OMZ). Despite the significance of denitrification in the Arabian Sea, we have no long-term record of its evolution spanning the past several million years. Here, we present the first record of denitrification evolution since Late Miocene (~10.2 Ma) in the Eastern Arabian Sea, where the SAM generates moderate surface water productivity, based on the samples retrieved during the International Ocean Discovery Program (IODP) Expedition 355. We find that (i) the SAM was persistently weaker from ~10.2 to 3.1 Ma it did not intensify at ~8 Ma in contrast to a few previous studies, (ii) on tectonic timescale, both the SAM and the East Asian Monsoon (EAM) varied synchronously, (iii) the first evidence of denitrification and productivity/SAM intensification was at ~3.2-2.8 Ma that coincided with Mid-Pliocene Warm Period (MPWP), and (iv) the modern strength of the OMZ where denitrification is a permanent feature was attained at ~1.0 Ma.

Discovery of Fungal Denitrification Inhibitors by Targeting Copper Nitrite Reductase from Fusarium oxysporum.

PubMed

Matsuoka, Masaki; Kumar, Ashutosh; Muddassar, Muhammad; Matsuyama, Akihisa; Yoshida, Minoru; Zhang, Kam Y J

2017-02-27

The efficient application of nitrogenous fertilizers is urgently required, as their excessive and inefficient use is causing substantial economic loss and environmental pollution. A significant amount of applied nitrogen in agricultural soils is lost as nitrous oxide (N 2 O) in the environment due to the microbial denitrification process. The widely distributed fungus Fusarium oxysporum is a major denitrifier in agricultural soils and its denitrification activity could be targeted to reduce nitrogen loss in the form of N 2 O from agricultural soils. Here, we report the discovery of first small molecule inhibitors of copper nitrite reductase (NirK) from F. oxysporum, which is a key enzyme in the fungal denitrification process. The inhibitors were discovered by a hierarchical in silico screening approach consisting of pharmacophore modeling and molecular docking. In vitro evaluation of F. oxysporum NirK activity revealed several pyrimidone and triazinone based compounds with potency in the low micromolar range. Some of these compounds suppressed the fungal denitrification in vivo as well. The compounds reported here could be used as starting points for the development of nitrogenous fertilizer supplements and coatings as a means to prevent nitrogen loss by targeting fungal denitrification.

Denitrification in the Mississippi River network controlled by flow through river bedforms

USGS Publications Warehouse

Gomez-Velez, Jesus D.; Harvey, Judson W.; Cardenas, M. Bayani; Kiel, Brian

2015-01-01

Increasing nitrogen concentrations in the world’s major rivers have led to over-fertilization of sensitive downstream waters. Flow through channel bed and bank sediments acts to remove riverine nitrogen through microbe-mediated denitrification reactions. However, little is understood about where in the channel network this biophysical process is most efficient, why certain channels are more effective nitrogen reactors, and how management practices can enhance the removal of nitrogen in regions where water circulates through sediment and mixes with groundwater - hyporheic zones. Here we present numerical simulations of hyporheic flow and denitrification throughout the Mississippi River network using a hydrogeomorphic model. We find that vertical exchange with sediments beneath the riverbed in hyporheic zones, driven by submerged bedforms, has denitrification potential that far exceeds lateral hyporheic exchange with sediments alongside river channels, driven by river bars and meandering banks. We propose that geomorphic differences along river corridors can explain why denitrification efficiency varies between basins in the Mississippi River network. Our findings suggest that promoting the development of permeable bedforms at the streambed - and thus vertical hyporheic exchange - would be more effective at enhancing river denitrification in large river basins than promoting lateral exchange through induced channel meandering.

A Theoretical Basis for the Transition to Denitrification at Nanomolar Oxygen Concentrations

NASA Astrophysics Data System (ADS)

Zakem, E.; Follows, M. J.

2016-02-01

Current climate change is likely to expand the size and intensity of marine oxygen minimum zones. How will this affect denitrification rates? Current global biogeochemical models typically prescribe a critical oxygen concentration below which anaerobic activity occurs, rather than resolve the underlying microbial processes. Here, we explore the dynamics of an idealized, simulated anoxic zone in which multiple prokaryotic metabolisms are resolved mechanistically, defined by redox chemistry and biophysical constraints. We first ask, what controls the critical oxygen concentration governing the favorability of aerobic or anaerobic respiration? The predicted threshold oxygen concentration varies as a function of the environment as well as of cell physiology, and lies within the nanomolar range. The model thus provides a theoretical underpinning for the recent observations of nanomolar oxygen concentrations in oxygen minimum zones. In the context of an idealized, two-dimensional intensified upwelling simulation, we also predict denitrification at oxygen concentrations orders of magnitude higher due to physical mixing, reconciling observations of denitrification over a similar range and demonstrating a decoupling of denitrification from the local oxygen concentration. In a sensitivity study with the idealized ocean model, we comment upon the relationship between the volume of anoxic waters and total denitrification.

Identification of key nitrous oxide production pathways in aerobic partial nitrifying granules.

PubMed

Ishii, Satoshi; Song, Yanjun; Rathnayake, Lashitha; Tumendelger, Azzaya; Satoh, Hisashi; Toyoda, Sakae; Yoshida, Naohiro; Okabe, Satoshi

2014-10-01

The identification of the key nitrous oxide (N2O) production pathways is important to establish a strategy to mitigate N2O emission. In this study, we combined real-time gas-monitoring analysis, (15)N stable isotope analysis, denitrification functional gene transcriptome analysis and microscale N2O concentration measurements to identify the main N2O producers in a partial nitrification (PN) aerobic granule reactor, which was fed with ammonium and acetate. Our results suggest that heterotrophic denitrification was the main contributor to N2O production in our PN aerobic granule reactor. The heterotrophic denitrifiers were probably related to Rhodocyclales bacteria, although different types of bacteria were active in the initial and latter stages of the PN reaction cycles, most likely in response to the presence of acetate. Hydroxylamine oxidation and nitrifier denitrification occurred, but their contribution to N2O emission was relatively small (20-30%) compared with heterotrophic denitrification. Our approach can be useful to quantitatively examine the relative contributions of the three pathways (hydroxylamine oxidation, nitrifier denitrification and heterotrophic denitrification) to N2O emission in mixed microbial populations. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Denitrification Temperature Dependence in Remote, Cold, and N-Poor Lake Sediments

NASA Astrophysics Data System (ADS)

Palacin-Lizarbe, Carlos; Camarero, Lluís.; Catalan, Jordi

2018-02-01

The reservoir size and pathway rates of the nitrogen (N) cycle have been deeply modified by the human enhancement of N fixation, atmospheric emissions, and climate warming. Denitrification (DEN) transforms nitrate into nitrogenous gas and thus removes reactive nitrogen (Nr) back to the atmospheric reservoir. There is still a rather limited knowledge of the denitrification rates and their temperature dependence across ecosystems; particularly, for the abundant cold and N-poor freshwater systems (e.g., Arctic and mountain lakes). We experimentally investigated the denitrification rates of mountain lake sediments by manipulating nitrate concentration and temperature on field collected cores. DEN rates were nitrate limited in field conditions and showed a large potential for an immediate DEN increase with both warming and higher Nr load. The estimated activation energy (Ea) for denitrification at nitrate saturation was 46 ± 7 kJ mol-1 (Q10 1.7 ± 0.4). The apparent Ea increased with nitrate (μM) limitation as Ea = 46 + 419 [NO3-]-1. Accordingly, we suggest that climate warming may have a synergistic effect with N emission reduction to readjusting the N cycle. Changes of nitrate availability might be more relevant than direct temperature effects on denitrification.

Nitrate removal with lateral flow sulphur autotrophic denitrification reactor.

PubMed

Lv, Xiaomei; Shao, Mingfei; Li, Ji; Xie, Chuanbo

2014-01-01

An innovative lateral flow sulphur autotrophic denitrification (LFSAD) reactor was developed in this study; the treatment performance was evaluated and compared with traditional sulphur/limestone autotrophic denitrification (SLAD) reactor. Results showed that nitrite accumulation in the LFSAD reactor was less than 1.0 mg/L during the whole operation. Denitrification rate increased with the increased initial alkalinity and was approaching saturation when initial alkalinity exceeded 2.5 times the theoretical value. Higher influent nitrate concentration could facilitate nitrate removal capacity. In addition, denitrification efficiency could be promoted under an appropriate reflux ratio, and the highest nitrate removal percentage was achieved under reflux ratio of 200%, increased by 23.8% than that without reflux. Running resistance was only about 1/9 of that in SLAD reactor with equal amount of nitrate removed, which was the prominent excellence of the new reactor. In short, this study indicated that the developed reactor was feasible for nitrate removal from waters with lower concentrations, including contaminated surface water, groundwater or secondary effluent of municipal wastewater treatment with fairly low running resistance. The innovation in reactor design in this study may bring forth new ideas of reactor development of sulphur autotrophic denitrification for nitrate-contaminated water treatment.

Denitrification, anammox and fixed nitrogen removal in the water column of a tropical great lake

NASA Astrophysics Data System (ADS)

Darchambeau, François; Roland, Fleur; Crowe, Sean A.; De Brabandere, Loreto; Llirós, Marc; Garcia-Armisen, Tamara; Inceoglu, Ozgul; Michiels, Céline; Servais, Pierre; Morana, Cédric D. T.; Bouillon, Steven; Meysman, Filip; Veuger, Bart; Masilya, Pascal M.; Descy, Jean-Pierre; Borges, Alberto V.

2013-04-01

If rates of microbial denitrification in aquatic systems are poorly constrained, it is much more the case for tropical water bodies. Lake Kivu [2.50° S 1.59° S, 29.37° E 28.83° E] is one of the great lakes of the East African Rift. It is an oligotrophic lake characterized by anoxic deep waters rich in dissolved gases (methane and carbon dioxide) and nutrients, and by well oxygenated and nutrient-depleted surface waters. During the seasonally stratified rainy season (October to May), a nitrogenous zone characterized by the accumulation of nitrite (NO2-) and nitrate (NO3-) is often observed in the lower layer of the mixolimnion. It results from nitrification of ammonium released by decaying organic matter. With the seasonal uplift of the oxygen minimum zone, the nitrogenous zone becomes anoxic and might be the most preferential area for fixed nitrogen (N) removal in Lake Kivu. Our work aimed at identifying and quantifying the processes of N losses by denitrification and/or anammox in the nitrogenous zone of the Lake Kivu water column. During 5 sampling campaigns (March 2010, October 2010, June 2011, February 2012 and September 2012), isotopic labelling experiments were used to quantify denitrification and anammox rates along vertical profiles at two pelagic stations of the main lake. Moreover, N2:Ar ratios were estimated during the September 2012 campaign, and 16S rDNA pyrosequencing was used to describe bacterial community composition during the last 2 campaigns. No bacteria related to organisms performing anammox was observed and labelling experiments failed to detect anammox at any locations and any depths. In Lake Kivu, denitrifying bacteria were mainly related to Denitratisoma and Thiobacillus genus. Significant denitrification rates were observed at several occasions, especially under the oxic-anoxic interface in the bottom of the nitracline. The annual average denitrification rate was estimated at ~150 μmoles N m-2 d-1. Denitrification was not the only nitrate-consuming process: dissimilative nitrate reduction to ammonium led to oxidized N removal with the same magnitude than denitrification alone. Isotopic labelling accompanied by addition of elemental sulfur evidenced that the upper vertical expansion of denitrification was limited by the abundance of reducing agents, while oxidized forms of N limited the lower expansion of denitrification.

Buried particulate organic carbon stimulates denitrification and nitrate retention in stream sediments at the groundwater-surface water interface

USGS Publications Warehouse

Stelzer, Robert S.; Scott, J. Thad; Bartsch, Lynn

2015-01-01

The interface between ground water and surface water in streams is a hotspot for N processing. However, the role of buried organic C in N transformation at this interface is not well understood, and inferences have been based largely on descriptive studies. Our main objective was to determine how buried particulate organic C (POC) affected denitrification and NO3− retention in the sediments of an upwelling reach in a sand-plains stream in Wisconsin. We manipulated POC in mesocosms inserted in the sediments. Treatments included low and high quantities of conditioned red maple leaves (buried beneath combusted sand), ambient sediment (sand containing background levels of POC), and a control (combusted sand). We measured denitrification rates in sediments by acetylene-block assays in the laboratory and by changes in N2 concentrations in the field using membrane inlet mass spectrometry. We measured NO3−, NH4+, and dissolved organic N (DON) retention as changes in concentrations and fluxes along groundwater flow paths in the mesocosms. POC addition drove oxic ground water to severe hypoxia, led to large increases in dissolved organic C (DOC), and strongly increased denitrification rates and N (NO3− and total dissolved N) retention relative to the control. In situ denitrification accounted for 30 to 60% of NO3− retention. Our results suggest that buried POC stimulated denitrification and NO3− retention by producing DOC and by creating favorable redox conditions for denitrification.

Numerical modeling of coupled nitrification-denitrification in sediment perfusion cores from the hyporheic zone of the Shingobee River, MN

USGS Publications Warehouse

Sheibley, R.W.; Jackman, A.P.; Duff, J.H.; Triska, F.J.

2003-01-01

Nitrification and denitrification kinetics in sediment perfusion cores were numerically modeled and compared to experiments on cores from the Shingobee River MN, USA. The experimental design incorporated mixing groundwater discharge with stream water penetration into the cores, which provided a well-defined, one-dimensional simulation of in situ hydrologic conditions. Ammonium (NH+4) and nitrate (NO-3) concentration gradients suggested the upper region of the cores supported coupled nitrification-denitrification, where groundwater-derived NH+4 was first oxidized to NO-3 then subsequently reduced via denitrification to N2. Nitrification and denitrification were modeled using a Crank-Nicolson finite difference approximation to a one-dimensional advection-dispersion equation. Both processes were modeled using first-order reaction kinetics because substrate concentrations (NH+4 and NO-3) were much smaller than published Michaelis constants. Rate coefficients for nitrification and denitrification ranged from 0.2 to 15.8 h-1 and 0.02 to 8.0 h-1, respectively. The rate constants followed an Arrhenius relationship between 7.5 and 22 ??C. Activation energies for nitrification and denitrification were 162 and 97.3 kJ/mol, respectively. Seasonal NH+4 concentration patterns in the Shingobee River were accurately simulated from the relationship between perfusion core temperature and NH+4 flux to the overlying water. The simulations suggest that NH+4 in groundwater discharge is controlled by sediment nitrification that, consistent with its activation energy, is strongly temperature dependent. ?? 2003 Elsevier Ltd. All rights reserved.

Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal.

PubMed

Magalhães, Catarina M; Joye, Samantha B; Moreira, Rosa M; Wiebe, William J; Bordalo, Adriano A

2005-05-01

The regulatory effects of salinity and inorganic nitrogen compounds on nitrification and denitrification were studied in intertidal sandy sediments and rocky biofilms in the Douro River estuary, Portugal, over a 12-month period. Nitrification and denitrification rates were measured in slurries of field samples and enrichment experiments using the difluoromethane and the acetylene inhibition techniques, respectively. Salinity did not regulate denitrification in either environment, suggesting that halotolerant bacteria dominated the denitrifier communities. However, nitrification rates were stimulated when salinity increased from 0 to 15 practical salinity units. NO3- addition experiments revealed that NO3- availability stimulates denitrification rates in sandy sediments, but not in rocky biofilms; however, in rocky biofilms a positive and linear relationship was observed between denitrification rates and water column NO3- concentrations (r=0.92) during the monthly surveys. The N2O:N2 ratios increased rapidly when NO3- increased from 63 to 363 microM; however, results from monthly surveys showed that environmental parameters other than NO3- availability may be important in controlling the variation in N2O production via denitrification. Ammonium additions to sandy sediments stimulated nitrification rates by 35% for the 20 microM NH4+ addition, but NH4+ appeared to inhibit nitrification at high concentration addition (200 microM NH4+). In contrast, rocky biofilm nitrification was stimulated by 65% when 200 microM NH4+ was added.

Predicting the denitrification capacity of sandy aquifers from in situ measurements using push-pull 15N tracer tests

NASA Astrophysics Data System (ADS)

Eschenbach, W.; Well, R.; Walther, W.

2014-12-01

Knowledge about the spatial variability of in situ denitrification rates (Dr(in situ)) and their relation to the denitrification capacity in nitrate-contaminated aquifers is crucial to predict the development of groundwater quality. Therefore, 28 push-pull 15N tracer tests for the measurement of in situ denitrification rates were conducted in two sandy Pleistocene aquifers in Northern Germany. The 15N analysis of denitrification derived 15N labelled N2 and N2O dissolved in water samples collected during the push-pull 15N tracer tests was performed by isotope ratio mass spectrometry (IRMS) in the lab and additionally for some tracer tests online in the field with a quadrupole membrane inlet mass spectrometer (MIMS), in order to test the feasibility of on-site real-time 15N analysis. Aquifer material from the same locations and depths as the push-pull injection points was incubated and the initial and cumulative denitrification after one year of incubation (Dcum(365)) as well as the stock of reduced compounds (SRC) was compared with in situ measurements of denitrification. This was done to derive transfer functions suitable to predict Dcum(365) and SRC from Dr(in situ). Dr(in situ) ranged from 0 to 51.5 μg N kg-1 d-1. Denitrification rates derived from on-site isotope analysis using membrane-inlet mass spectrometry satisfactorily coincided with laboratory analysis by conventional isotope ratio mass spectrometry, thus proving the feasibility of in situ analysis. Dr(in situ) was significantly higher in the sulphidic zone of both aquifers compared to the zone of non-sulphidic aquifer material. Overall, regressions between the Dcum(365) and SRC of the tested aquifer material with Dr(in situ) exhibited only a modest linear correlation for the full data set. But the predictability of Dcum(365) and SRC from Dr(in situ) data clearly increased for aquifer samples from the zone of NO3--bearing groundwater. In the NO3--free aquifer zone a lag phase of denitrification after NO3- injections was observed, which confounded the relationship between reactive compounds and in situ denitrification activity. This finding was attributed to adaptation processes in the microbial community after NO3- injections. Exemplarily, it was demonstrated that the microbial community in the NO3--free zone close below the NO3--bearing zone can be adapted to denitrification by amending wells with NO3--injections for an extended period. In situ denitrification rates were 30 to 65% higher after pre-conditioning with NO3-. Results from this study suggest that such pre-conditioning is crucial for the measurement of Dr(in situ) in deeper aquifer material from the NO3--free groundwater zone and thus for the prediction of Dcum(365) and SRC from Dr(in situ).

Predicting the denitrification capacity of sandy aquifers from in situ measurements using push-pull 15N tracer tests

NASA Astrophysics Data System (ADS)

Eschenbach, W.; Well, R.; Walther, W.

2015-04-01

Knowledge about the spatial variability of in situ denitrification rates (Dr(in situ)) and their relation to the denitrification capacity in nitrate-contaminated aquifers is crucial to predict the development of groundwater quality. Therefore, 28 push-pull 15N tracer tests for the measurement of in situ denitrification rates were conducted in two sandy Pleistocene aquifers in northern Germany. The 15N analysis of denitrification-derived 15N-labelled N2 and N2O dissolved in water samples collected during the push-pull 15N tracer tests was performed using isotope ratio mass spectrometry (IRMS) in the lab and additionally for some tracer tests online in the field with a quadrupole membrane inlet mass spectrometer (MIMS) in order to test the feasibility of on-site real-time 15N analysis. Aquifer material from the same locations and depths as the push-pull injection points was incubated, and the initial and cumulative denitrification after 1 year of incubation (Dcum(365)) as well as the stock of reduced compounds (SRC) was compared with in situ measurements of denitrification. This was done to derive transfer functions suitable to predict Dcum(365) and SRC from Dr(in situ). Dr(in situ) ranged from 0 to 51.5 μg N kg-1 d-1. Denitrification rates derived from on-site isotope analysis using MIMS satisfactorily coincided with laboratory analysis by conventional IRMS, thus proving the feasibility of in situ analysis. Dr(in situ) was significantly higher in the sulfidic zone of both aquifers compared to the zone of non-sulfidic aquifer material. Overall, regressions between the Dcum(365) and SRC of the tested aquifer material with Dr(in situ) exhibited only a modest linear correlation for the full data set. However, the predictability of Dcum(365) and SRC from Dr(in situ) data clearly increased for aquifer samples from the zone of NO3--bearing groundwater. In the NO3--free aquifer zone, a lag phase of denitrification after NO3- injections was observed, which confounded the relationship between reactive compounds and in situ denitrification activity. This finding was attributed to adaptation processes in the microbial community after NO3- injections. It was also demonstrated that the microbial community in the NO3--free zone just below the NO3--bearing zone can be adapted to denitrification by NO3- injections into wells for an extended period. In situ denitrification rates were 30 to 65 times higher after pre-conditioning with NO3-. Results from this study suggest that such pre-conditioning is crucial for the measurement of Dr(in situ) in deeper aquifer material from the NO3--free groundwater zone and thus for the prediction of Dcum(365) and SRC from Dr(in situ).

Effect of Soil pH Increase by Biochar on NO, N2O and N2 Production during Denitrification in Acid Soils

PubMed Central

Obia, Alfred; Cornelissen, Gerard; Mulder, Jan; Dörsch, Peter

2015-01-01

Biochar (BC) application to soil suppresses emission of nitrous- (N2O) and nitric oxide (NO), but the mechanisms are unclear. One of the most prominent features of BC is its alkalizing effect in soils, which may affect denitrification and its product stoichiometry directly or indirectly. We conducted laboratory experiments with anoxic slurries of acid Acrisols from Indonesia and Zambia and two contrasting BCs produced locally from rice husk and cacao shell. Dose-dependent responses of denitrification and gaseous products (NO, N2O and N2) were assessed by high-resolution gas kinetics and related to the alkalizing effect of the BCs. To delineate the pH effect from other BC effects, we removed part of the alkalinity by leaching the BCs with water and acid prior to incubation. Uncharred cacao shell and sodium hydroxide (NaOH) were also included in the study. The untreated BCs suppressed N2O and NO and increased N2 production during denitrification, irrespective of the effect on denitrification rate. The extent of N2O and NO suppression was dose-dependent and increased with the alkalizing effect of the two BC types, which was strongest for cacao shell BC. Acid leaching of BC, which decreased its alkalizing effect, reduced or eliminated the ability of BC to suppress N2O and NO net production. Just like untreated BCs, NaOH reduced net production of N2O and NO while increasing that of N2. This confirms the importance of altered soil pH for denitrification product stoichiometry. Addition of uncharred cacao shell stimulated denitrification strongly due to availability of labile carbon but only minor effects on the product stoichiometry of denitrification were found, in accordance with its modest effect on soil pH. Our study indicates that stimulation of denitrification was mainly due to increases in labile carbon whereas change in product stoichiometry was mainly due to a change in soil pH. PMID:26397367

Effect of Soil pH Increase by Biochar on NO, N2O and N2 Production during Denitrification in Acid Soils.

PubMed

Obia, Alfred; Cornelissen, Gerard; Mulder, Jan; Dörsch, Peter

2015-01-01

Biochar (BC) application to soil suppresses emission of nitrous- (N2O) and nitric oxide (NO), but the mechanisms are unclear. One of the most prominent features of BC is its alkalizing effect in soils, which may affect denitrification and its product stoichiometry directly or indirectly. We conducted laboratory experiments with anoxic slurries of acid Acrisols from Indonesia and Zambia and two contrasting BCs produced locally from rice husk and cacao shell. Dose-dependent responses of denitrification and gaseous products (NO, N2O and N2) were assessed by high-resolution gas kinetics and related to the alkalizing effect of the BCs. To delineate the pH effect from other BC effects, we removed part of the alkalinity by leaching the BCs with water and acid prior to incubation. Uncharred cacao shell and sodium hydroxide (NaOH) were also included in the study. The untreated BCs suppressed N2O and NO and increased N2 production during denitrification, irrespective of the effect on denitrification rate. The extent of N2O and NO suppression was dose-dependent and increased with the alkalizing effect of the two BC types, which was strongest for cacao shell BC. Acid leaching of BC, which decreased its alkalizing effect, reduced or eliminated the ability of BC to suppress N2O and NO net production. Just like untreated BCs, NaOH reduced net production of N2O and NO while increasing that of N2. This confirms the importance of altered soil pH for denitrification product stoichiometry. Addition of uncharred cacao shell stimulated denitrification strongly due to availability of labile carbon but only minor effects on the product stoichiometry of denitrification were found, in accordance with its modest effect on soil pH. Our study indicates that stimulation of denitrification was mainly due to increases in labile carbon whereas change in product stoichiometry was mainly due to a change in soil pH.

Indian Monsoon and denitrification change in the Laxmi Basin (IODP Exp. 355 Site U1456) of the Eastern Arabian Sea during the last 800 kyrs

NASA Astrophysics Data System (ADS)

Kim, J. E.; Khim, B. K.; Ikehara, M.; Lee, J.

2017-12-01

The Arabian Sea is a famous site for the basin-wide denitrification in the globe. The Western Arabian Sea has been acknowledged by its upwelling-induced denitrification related to the Indian Monsoon system (Altabet et al., 1999). It was recently reported that the denitrification in the Eastern Arabian Sea (IODP Exp. 355 Site U1456) has been persistent and consistent during the mid-Pleistocene as reflected in the bulk sediment δ15N values (Tripathi et al., 2017). Based on the age model reconstructed by δ18O stratigraphy of planktonic foraminifera (Globigerinoides ruber) together with shipboard biostratigraphic and paleomagnetic data at Site U1456 drilled in the Laxmi Basin of the Eastern Arabian Sea, the glacial-interglacial fluctuations of denitrification in association with the development of oxygen minimum zone (OMZ) were resolved in the context of Indian Monsoon activity. One of striking features in the Eastern Arabian Sea is that the δ15N values of bulk sediment show clear and consistent denitrification with minimum δ15N values exceeding 6‰ even during glacial periods, when its western counterpart experienced a temporal collapse of OMZ and denitrification. The Eastern Arabian Sea is fed not only by the upwelling-induced productivity in the western margin during the summer monsoon but also by the high productivity during the winter monsoon, both of which maintain the increased productivity affecting the OMZ through the consumption of dissolved oxygen by the degradation of sinking organic particles. The Eastern Arabian Sea is further influenced by the clockwise surface currents, intermediate water ventilation change by the blockage of Antarctic Intermediate Water, limited inflow from the Red Sea/Persian Gulf, and the freshwater salinity stratification due to nearby riverine discharges, all of which make the denitrification process more complicated than the Western Arabian Sea. Nonetheless, the glacial-interglacial denitrification change in the Eastern Arabian Sea is interpreted to be linked strongly with the intensity of Indian Monsoon.

The impact of nitrification inhibitor DMPP on N2O, NO and N2 emissions at different soil moisture conditions in grassland soil

NASA Astrophysics Data System (ADS)

Wu, D.; Cardenas, L. M.; Sanz, S. C.; Brueggemann, N.; Loick, N.; Liu, S.; Bol, R.

2016-12-01

Emissions of gaseous forms of nitrogen from soil, such as nitrous oxide (N2O) and nitric oxide (NO), have shown great impact on global warming and atmospheric chemistry. Although in soil both nitrification and denitrification could cause N2O and NO emissions, most recent studies demonstrated that denitrification is the dominant process responsible for the increase of atmospheric N2O, while nitrification produces most of NO. The use of nitrification inhibitors (NI) has repeatedly been shown to lower both N2O and NO emissions from agricultural soils; nevertheless, the efficiency of the mitigation effect varies greatly. It is generally assumed that nitrification inhibitors have no direct effect on denitrification. However, the indirect impact, due to the reduced substrate delivery (NO3-) to microsites where denitrification occurs, may have significant effects on denitrification product stoichiometry that may significantly lower soil born N2O emissions. In the present study, soil incubation experiments were carried out in a fully automated continuous-flow incubation system under a He/O2 atmosphere. Ammonium sulfate was applied with and without NI (DMPP) to a UK grassland soil under three different soil moisture conditions (50% WFPS, 65% WFPS, 80% WFPS). With every treatment glucose was applied to supply enough carbon for denitrification. We examined the effect of DMPP on NO, N2O and N2 emissions at different soil moisture conditions which favor nitrification, a mixture of both nitrification and denitrification, or denitrification, respectively. Generally cumulative NO emissions were about 17% of cumulative N2O emissions, while N2 emissions were only detected at high soil moisture condition (80% WFPS). Higher soil moisture increased both N2O and NO emissions. DMPP application increased N2 emissions at soil moisture condition favoring denitrification. Although the application of DMPP significantly mitigated both N2O and NO emissions in all DMPP treatments, the efficiency of the mitigation effect varied with different soil moisture conditions. Overall, DMPP application mitigated about 40- 60% N2O emissions and 50-70% NO emissions during the 44-day incubation period.

Cell biology and molecular basis of denitrification.

PubMed Central

Zumft, W G

1997-01-01

Denitrification is a distinct means of energy conservation, making use of N oxides as terminal electron acceptors for cellular bioenergetics under anaerobic, microaerophilic, and occasionally aerobic conditions. The process is an essential branch of the global N cycle, reversing dinitrogen fixation, and is associated with chemolithotrophic, phototrophic, diazotrophic, or organotrophic metabolism but generally not with obligately anaerobic life. Discovered more than a century ago and believed to be exclusively a bacterial trait, denitrification has now been found in halophilic and hyperthermophilic archaea and in the mitochondria of fungi, raising evolutionarily intriguing vistas. Important advances in the biochemical characterization of denitrification and the underlying genetics have been achieved with Pseudomonas stutzeri, Pseudomonas aeruginosa, Paracoccus denitrificans, Ralstonia eutropha, and Rhodobacter sphaeroides. Pseudomonads represent one of the largest assemblies of the denitrifying bacteria within a single genus, favoring their use as model organisms. Around 50 genes are required within a single bacterium to encode the core structures of the denitrification apparatus. Much of the denitrification process of gram-negative bacteria has been found confined to the periplasm, whereas the topology and enzymology of the gram-positive bacteria are less well established. The activation and enzymatic transformation of N oxides is based on the redox chemistry of Fe, Cu, and Mo. Biochemical breakthroughs have included the X-ray structures of the two types of respiratory nitrite reductases and the isolation of the novel enzymes nitric oxide reductase and nitrous oxide reductase, as well as their structural characterization by indirect spectroscopic means. This revealed unexpected relationships among denitrification enzymes and respiratory oxygen reductases. Denitrification is intimately related to fundamental cellular processes that include primary and secondary transport, protein translocation, cytochrome c biogenesis, anaerobic gene regulation, metalloprotein assembly, and the biosynthesis of the cofactors molybdopterin and heme D1. An important class of regulators for the anaerobic expression of the denitrification apparatus are transcription factors of the greater FNR family. Nitrate and nitric oxide, in addition to being respiratory substrates, have been identified as signaling molecules for the induction of distinct N oxide-metabolizing enzymes. PMID:9409151

Dynamic interplay between microbial denitrification and antibiotic resistance under enhanced anoxic denitrification condition in soil.

PubMed

Sun, Mingming; Ye, Mao; Liu, Kuan; Schwab, Arthur P; Liu, Manqiang; Jiao, Jiaguo; Feng, Yanfang; Wan, Jinzhong; Tian, Da; Wu, Jun; Li, Huixin; Hu, Feng; Jiang, Xin

2017-03-01

Mixed contamination of nitrate and antibiotics/antibiotic-resistant genes (ARGs) is an emerging environmental risk to farmland soil. This is the first study to explore the role of excessive anthropogenic nitrate input in the anoxic dissipation of soil antibiotic/ARGs. During the initial 10 days of incubation, the presence of soil antibiotics significantly inhibited NO 3 - dissipation, N 2 O production rate, and denitrifying genes (DNGs) abundance in soil (p < 0.05). Between days 10 and 30, by contrast, enhanced denitrification clearly prompted the decline in antibiotic contents and ARG abundance. Significantly negative correlations were detected between DNGs and ARGs, suggesting that the higher the DNG activity, the more dramatic is the denitrification and the greater are the antibiotic dissipation and ARG abundance. This study provides crucial knowledge for understanding the mutual interaction between soil DNGs and ARGs in the enhanced anoxic denitrification condition. Copyright © 2016 Elsevier Ltd. All rights reserved.

Denitrification by the mix-culturing of fungi and bacteria with shell.

PubMed

Liu, Deli; Zhang, Shan; Zheng, Yongliang; Shoun, Hirofumi

2006-01-01

Denitrification by pure and mixed culture of Fusarium oxysporum and Pseudomonas stutzeri in different mineral medium and in synthetic wastewater were examined. The results obtained revealed that a rapid N2 evolution by F. oxysporum and P. stutzeri in mineral medium and synthetic wastewater was observed. In co-cultures of F. oxysporum and P. stutzeri, N2O produced by F. oxysporum was rapidly consumed by P. stutzeri. This indicated that mixed culture of F. oxysporum and P. stutzeri could be used for efficient nitrate and nitrite removal. Using synthetic wastewater, about 87% of nitrate was reduced by co-denitrification of F. oxysporum and P. stutzeri after incubation for 6 days. In the further denitrification tests, the interaction of shell and mixed culture of F. oxysporum and P. stutzeri was investigated. The dinitrogen was rapidly evolved (442.48 micromol N2 produced from 1.0 mmol of NO3(-) in 36 h). These results clearly showed that shell provide a suitable microenvironment for P. stutzeri, which is beneficial to the denitrification.

Interaction of organic carbon, reduced sulphur and nitrate in anaerobic baffled reactor for fresh leachate treatment.

PubMed

Yin, Zhixuan; Xie, Li; Khanal, Samir Kumar; Zhou, Qi

2016-01-01

Interaction of organic carbon, reduced sulphur and nitrate was examined using anaerobic baffled reactor for fresh leachate treatment by supplementing nitrate and/or sulphide to compartment 3. Nitrate was removed completely throughout the study mostly via denitrification (>80%) without nitrite accumulation. Besides carbon source, various reduced sulphur (e.g. sulphide, elemental sulphur and organic sulphur) could be involved in the nitrate reduction process via sulphur-based autotrophic denitrification when dissolved organic carbon/nitrate ratio decreased below 1.6. High sulphide concentration not only stimulated autotrophic denitrification, but it also inhibited heterotrophic denitrification, resulting in a shift (11-20%) from heterotrophic denitrification to dissimilatory nitrate reduction to ammonia. High-throughput 16S rRNA gene sequencing analysis further confirmed that sulphur-oxidizing nitrate-reducing bacteria were stimulated with increase in the proportion of bacterial population from 18.6% to 27.2% by high sulphide concentration, meanwhile, heterotrophic nitrate-reducing bacteria and fermentative bacteria were inhibited with 25.5% and 66.6% decrease in the bacterial population.

Nitrous oxide production by nitrification and denitrification in the Eastern Tropical South Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Ji, Qixing; Babbin, Andrew R.; Jayakumar, Amal; Oleynik, Sergey; Ward, Bess B.

2015-12-01

The Eastern Tropical South Pacific oxygen minimum zone (ETSP-OMZ) is a site of intense nitrous oxide (N2O) flux to the atmosphere. This flux results from production of N2O by nitrification and denitrification, but the contribution of the two processes is unknown. The rates of these pathways and their distributions were measured directly using 15N tracers. The highest N2O production rates occurred at the depth of peak N2O concentrations at the oxic-anoxic interface above the oxygen deficient zone (ODZ) because slightly oxygenated waters allowed (1) N2O production from both nitrification and denitrification and (2) higher nitrous oxide production yields from nitrification. Within the ODZ proper (i.e., anoxia), the only source of N2O was denitrification (i.e., nitrite and nitrate reduction), the rates of which were reflected in the abundance of nirS genes (encoding nitrite reductase). Overall, denitrification was the dominant pathway contributing the N2O production in the ETSP-OMZ.

Carbon source recovery from excess sludge by mechanical disintegration for biological denitrification.

PubMed

Zubrowska-Sudol, M

2018-04-01

The goal of the study was to evaluate the possibility of carbon source recovery from excess sludge by mechanical disintegration for biological denitrification. The total efficiency of denitrification, unit demand for organic compounds for denitrification, unit volume of disintegrated sludge and unit cost of nitrogen removal as a function of energy density used for excess sludge disintegration (70, 140 and 210 kJ/L) were analyzed. In the study a full-scale disc disintegrator was used (motor power: 30 kWh, motor speed: 2,950 rpm). It was shown that the amounts of organic compounds released from the activated sludge flocs at all tested levels of energy density are high enough to be used to intensify the removal of nitrogen compounds from wastewater. It was also documented that the energy density provided during process of disintegration was an important factor determining the characteristics of organic compounds obtained under the disintegration for their use in order to intensify the process of denitrification. The highest value of total efficiency of denitrification (50.5 ± 3.1 mg N/L) was obtained for carbon source recovery from excess sludge at 70 kJ/L, but the lowest unit cost of nitrogen removal occurred for 140 kJ/L (0.0019 ± 0.0011 EUR/g N).

Denitrification in the Mississippi River network controlled by flow through river bedforms

USGS Publications Warehouse

Gomez-Velez, Jesus D.; Harvey, Judson W.; Cardenas, M. Bayani; Kiel, Brian

2015-01-01

Increasing nitrogen concentrations in the world’s major rivers have led to over-fertilization of sensitive downstream waters1, 2, 3, 4. Flow through channel bed and bank sediments acts to remove riverine nitrogen through microbe-mediated denitrification reactions5, 6, 7, 8, 9, 10. However, little is understood about where in the channel network this biophysical process is most efficient, why certain channels are more effective nitrogen reactors, and how management practices can enhance the removal of nitrogen in regions where water circulates through sediment and mixes with groundwater - hyporheic zones8, 11, 12. Here we present numerical simulations of hyporheic flow and denitrification throughout the Mississippi River network using a hydrogeomorphic model. We find that vertical exchange with sediments beneath the riverbed in hyporheic zones, driven by submerged bedforms, has denitrification potential that far exceeds lateral hyporheic exchange with sediments alongside river channels, driven by river bars and meandering banks. We propose that geomorphic differences along river corridors can explain why denitrification efficiency varies between basins in the Mississippi River network. Our findings suggest that promoting the development of permeable bedforms at the streambed - and thus vertical hyporheic exchange - would be more effective at enhancing river denitrification in large river basins than promoting lateral exchange through induced channel meandering. 

Microbial ecology of denitrification in biological wastewater treatment.

PubMed

Lu, Huijie; Chandran, Kartik; Stensel, David

2014-11-01

Globally, denitrification is commonly employed in biological nitrogen removal processes to enhance water quality. However, substantial knowledge gaps remain concerning the overall community structure, population dynamics and metabolism of different organic carbon sources. This systematic review provides a summary of current findings pertaining to the microbial ecology of denitrification in biological wastewater treatment processes. DNA fingerprinting-based analysis has revealed a high level of microbial diversity in denitrification reactors and highlighted the impacts of carbon sources in determining overall denitrifying community composition. Stable isotope probing, fluorescence in situ hybridization, microarrays and meta-omics further link community structure with function by identifying the functional populations and their gene regulatory patterns at the transcriptional and translational levels. This review stresses the need to integrate microbial ecology information into conventional denitrification design and operation at full-scale. Some emerging questions, from physiological mechanisms to practical solutions, for example, eliminating nitrous oxide emissions and supplementing more sustainable carbon sources than methanol, are also discussed. A combination of high-throughput approaches is next in line for thorough assessment of wastewater denitrifying community structure and function. Though denitrification is used as an example here, this synergy between microbial ecology and process engineering is applicable to other biological wastewater treatment processes. Copyright © 2014 Elsevier Ltd. All rights reserved.

Oxygen requirement for denitrification by the fungus Fusarium oxysporum.

PubMed

Zhou, Z; Takaya, N; Sakairi, M A; Shoun, H

2001-01-01

The effects of dioxygen (O2) on the denitrification activity of the fungus Fusarium oxysporum MT-811 in fed-batch culture in a stirred jar fermentor were examined. The results revealed that fungal denitrifying activity requires a minimal amount of O2 for induction, which is repressed by excess O2. The optimal O2 supply differed between the denitrification substrates : 690 micromol O2 x h(-1) (g dry cell wt.)(-1) for nitrate (NO3-) and about 250 micromol O2 x h(-1) (g dry cell wt.)(-1) for nitrite (NO2-). The reduction of NO3- required more O2 than that of NO2- . With an optimal O2 supply, 80% and 52% of nitrogen atoms in NO3- and NO2-, respectively, were recovered as the denitrification product N2O. These features of F. oxysporum differ from those of bacterial denitrifiers that work exclusively under anoxic conditions. The denitrification activity of F. oxysporum MT-811 mutants with impaired NO3- assimilation was about double that of the wild-type strain, suggesting competition for the substrate between assimilatory and dissimilatory types of NO3- reduction. These results showed that denitrification by F. oxysporum has unique features, namely, a minimal O2 requirement and competition with assimilatory NO3-.

Potential nitrification and denitrification and the corresponding composition of the bacterial communities in a compact constructed wetland treating landfill leachates.

PubMed

Sundberg, C; Tonderski, K; Lindgren, P E

2007-01-01

Constructed wetlands can be used to decrease the high ammonium concentrations in landfill leachates. We investigated nitrification/denitrification activity and the corresponding bacterial communities in landfill leachate that was treated in a compact constructed wetland, Tveta Recycling Facility, Sweden. Samples were collected at three depths in a filter bed and the sediment from a connected open pond in July, September and November 2004. Potential ammonia oxidation was measured by short-term incubation method and potential denitrification by the acetylene inhibition technique. The ammonia-oxidising and the denitrifying bacterial communities were investigated using group-specific PCR primers targeting 16S rRNA genes and the functional gene nosZ, respectively. PCR products were analysed by denaturing gradient gel electrophoresis and nucleotide sequencing. The same degree of nitrification activity was observed in the pond sediment and at all levels in the filter bed, whereas the denitrification activity decreased with filter bed depth. Denitrification rates were higher in the open pond, even though the denitrifying bacterial community was more diverse in the filter bed. The ammonia-oxidising community was also more varied in the filter bed. In the filter bed and the open pond, there was no obvious relationship between the nitrification/denitrification activities and the composition of the corresponding bacterial communities.

Isotopologue data reveal denitrification as the primary source of nitrous oxide along a fertilization gradient in a temperature agricultural field

NASA Astrophysics Data System (ADS)

Ostrom, N. E.; Ostrom, P. H.; Gandhi, H.; Millar, N.; Robertson, G. P.

2009-12-01

The microbial source of nitrous oxide in terrestrial ecosystems has long been debated. Both nitrification and denitrification produce nitrous oxide but their relative importance remains uncertain. Here we apply site preference, SP, (the difference in δ15N between the central and outer N atom in nitrous oxide), to estimate production of nitrous oxide from bacterial denitrification (including nitrifier denitrification). Soil flux chambers were deployed within 3 agricultural plots planted with wheat in corn-soybean wheat rotation as part of ongoing studies at the Kellogg Biological Stations Long-Term Ecosystem Research site. Distinct levels of urea-ammonium nitrate (28%) fertilizer were applied to each plot in the spring of 2007 to obtain totals of 0, 134, and 246 kg-N ha-1. Samples for nitrous oxide flux and isotopologue composition were collected approximately 4 times per week from May through December, 2007, in each of the plots. The average annual nitrous oxide flux weighted N isotope values increased along the fertilization gradient (-14.7, -12.3 and -9.1 ‰, for the no, medium and high N additions, respectively) whereas O isotope values decreased (33.2, 28.7 and 25.3 ‰, respectively). Flux weighted SP values along the fertilization gradient (0.7, 4.0 and 3.8 ‰, respectively) were low and consistent with an origin predominantly from denitrification based on SP values found for nitrification and denitrification in pure culture studies. Consequently, we find that irregardless of the level of fertilizer applied denitrification was the predominant source of nitrous oxide.

Methods for measuring denitrification: Diverse approaches to a difficult problem

USGS Publications Warehouse

Groffman, Peter M; Altabet, Mary A.; Böhlke, J.K.; Butterbach-Bahl, Klaus; David, Mary B.; Firestone, Mary K.; Giblin, Anne E.; Kana, Todd M.; Nielsen , Lars Peter; Voytek, Mary A.

2006-01-01

Denitrification, the reduction of the nitrogen (N) oxides, nitrate (NO3−) and nitrite (NO2−), to the gases nitric oxide (NO), nitrous oxide (N2O), and dinitrogen (N2), is important to primary production, water quality, and the chemistry and physics of the atmosphere at ecosystem, landscape, regional, and global scales. Unfortunately, this process is very difficult to measure, and existing methods are problematic for different reasons in different places at different times. In this paper, we review the major approaches that have been taken to measure denitrification in terrestrial and aquatic environments and discuss the strengths, weaknesses, and future prospects for the different methods. Methodological approaches covered include (1) acetylene-based methods, (2) 15N tracers, (3) direct N2 quantification, (4) N2:Ar ratio quantification, (5) mass balance approaches, (6) stoichiometric approaches, (7) methods based on stable isotopes, (8) in situ gradients with atmospheric environmental tracers, and (9) molecular approaches. Our review makes it clear that the prospects for improved quantification of denitrification vary greatly in different environments and at different scales. While current methodology allows for the production of accurate estimates of denitrification at scales relevant to water and air quality and ecosystem fertility questions in some systems (e.g., aquatic sediments, well-defined aquifers), methodology for other systems, especially upland terrestrial areas, still needs development. Comparison of mass balance and stoichiometric approaches that constrain estimates of denitrification at large scales with point measurements (made using multiple methods), in multiple systems, is likely to propel more improvement in denitrification methods over the next few years.

Effect of atrazine on potential denitrification in aquifer sediments

USGS Publications Warehouse

Bradley, P.M.; Chapelle, F.H.; Jagucki, M.L.; McMahon, P.B.

1994-01-01

Agriculturaf use of fertilizers and herbicides has often resulted in nitrate and atrazine contamination of the shallow aquifers that underlay cultivated fields. In several cases, the concentrations of atrazine and nitrate dissolved in ground water are positively correlated (Spalding ef al., 1979; Chen and Druliner, 1987; Spalding et al., 1989). Because simultaneous application of nitrate fertilizers and the herbicide, atrazine, is common, the co-occurrence of these contaminants in ground water is not entirely unexpected. However, the possibility also exists that this co-occurrence may ret&t interactions of atrazine with nitrate in the subsurface environment. R&ton and Cervelh (1980), McElhannon ei al. (1984) and Mills (1984) have reported that atrazine inhibits denitrification in‘soil’lf this i‘s indeed the case, atrazine contamination may contribute to nitrate preservation and accumulation in anaerobic aquifers by inhibiting denitrification, the principal mechanism for nitrate removal in anaerobic systems. Huwever, the effect of atrazine on the rate of denit~ficat~on in soils remains controversial, because atrazine has been reported variously to enhance denitrification (Cervelli and Ralston, 1983) or to have no effect on denitrification in soils (Bollag and Henninger, 1976; Yeomans and Bremner, IQ85, 1987). Moreover, the effect of dissolved atrazine concentrations on the rate of denitrification in aquifer sediments has not been reported. Our purpose was to determine the elects of dissolved atrazine concentrations on potential rates ofdenitri~~t~on in aquifer sediments from two different agricultural areas to evaluate the hypothesis that, by inhibiting denitrification, atrazine contributes to nitrate preservation in anaerobic aquifer systems.

Denitrification 'Woodchip' Bioreactors for Productive and Sustainable Agricultural Systems

NASA Astrophysics Data System (ADS)

Christianson, L. E.; Summerfelt, S.; Sharrer, K.; Lepine, C.; Helmers, M. J.

2014-12-01

Growing alarm about negative cascading effects of reactive nitrogen in the environment has led to multifaceted efforts to address elevated nitrate-nitrogen levels in water bodies worldwide. The best way to mitigate N-related impacts, such as hypoxic zones and human health concerns, is to convert nitrate to stable, non-reactive dinitrogen gas through the natural process of denitrification. This means denitrification technologies need to be one of our major strategies for tackling the grand challenge of managing human-induced changes to our global nitrogen cycle. While denitrification technologies have historically been focused on wastewater treatment, there is great interest in new lower-tech options for treating effluent and drainage water from one of our largest reactive nitrogen emitters -- agriculture. Denitrification 'woodchip' bioreactors are able to enhance this natural N-conversion via addition of a solid carbon source (e.g., woodchips) and through designs that facilitate development of anoxic conditions required for denitrification. Wood-based denitrification technologies such as woodchip bioreactors and 'sawdust' walls for groundwater have been shown to be effective at reducing nitrate loads in agricultural settings around the world. Designing these systems to be low-maintenance and to avoid removing land from agricultural production has been a primary focus of this "farmer-friendly" technology. This presentation provides a background on woodchip bioreactors including design considerations, N-removal performance, and current research worldwide. Woodchip bioreactors for the agricultural sector are an accessible new option to address society's interest in improving water quality while simultaneously allowing highly productive agricultural systems to continue to provide food in the face of increasing demand, changing global diets, and fluctuating weather.

The capability of estuarine sediments to remove nitrogen: implications for drinking water resource in Yangtze Estuary.

PubMed

Liu, Lin; Wang, Dongqi; Deng, Huanguang; Li, Yangjie; Chang, Siqi; Wu, Zhanlei; Yu, Lin; Hu, Yujie; Yu, Zhongjie; Chen, Zhenlou

2014-09-01

Water in the Yangtze Estuary is fresh most of the year because of the large discharge of Yangtze River. The Qingcaosha Reservoir built on the Changxing Island in the Yangtze Estuary is an estuarine reservoir for drinking water. Denitrification rate in the top 10 cm sediment of the intertidal marshes and bare mudflat of Yangtze Estuarine islands was measured by the acetylene inhibition method. Annual denitrification rate in the top 10 cm of sediment was 23.1 μmol m(-2) h(-1) in marshes (ranged from 7.5 to 42.1 μmol m(-2) h(-1)) and 15.1 μmol m(-2) h(-1) at the mudflat (ranged from 6.6 to 26.5 μmol m(-2) h(-1)). Annual average denitrification rate is higher at mashes than at mudflat, but without a significant difference (p = 0.084, paired t test.). Taking into account the vegetation and water area of the reservoir, a total 1.42 × 10(8) g N could be converted into nitrogen gas (N2) annually by the sediment, which is 97.7 % of the dissolved inorganic nitrogen input through precipitation. Denitrification in reservoir sediment can control the bioavailable nitrogen level of the water body. At the Yangtze estuary, denitrification primarily took place in the top 4 cm of sediment, and there was no significant spatial or temporal variation of denitrification during the year at the marshes and mudflat, which led to no single factor determining the denitrification process but the combined effects of the environmental factors, hydrologic condition, and wetland vegetation.

Denitrification of nitrogen released from senescing algal biomass in coastal agricultural headwater streams.

PubMed

McMillan, Sara K; Piehler, Michael F; Thompson, Suzanne P; Paerl, Hans W

2010-01-01

Assimilation of inorganic N by photoautotrophs has positive impacts on nutrient retention; however this retention is only temporary. As the biomass senesces, organic and inorganic forms of N are released back to the stream where they can be further transformed (i.e., nitrification, denitrification) or exported downstream. The purpose of this study was to assess the fate of the remineralized N, particularly the potential for removal by denitrification. Experiments were conducted on intact sediment cores from streams in an agricultural watershed. Cores were amended with varying ages of algal leachate and denitrification rates were measured with a membrane inlet mass spectrometer. Results of this study demonstrated that senescing algal biomass stimulated denitrification rates and provided a source of N and labile C to denitrifiers. Regardless of leachate age, addition of leachate to intact cores revealed a net loss of dissolved inorganic N from the water column. Denitrification rates were most strongly related to concentrations of dissolved and particulate C in the overlying water and secondarily to C quality (molar C to N ratio of total dissolved C and N) and NO(3)(-) flux. Using a mass balance approach, the proportion of N from senescing algal biomass that was denitrified accounted for as much as 10% of the total dissolved nitrogen (TDN) and up to 100% of the NO(3)(-) during a 3-h experiment. These results suggest an important link between instream algal uptake and eventual denitrification thereby providing a pathway for permanent removal of watershed-derived N from the stream ecosystem.

Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons

PubMed Central

Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

2016-01-01

Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and denitrification processes. The results presented here show that the potential activity of anaerobic nitrate-reducing organisms is not dependent on the availability of environmental NO3-. PMID:27175907

Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons.

PubMed

Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

2016-01-01

Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and denitrification processes. The results presented here show that the potential activity of anaerobic nitrate-reducing organisms is not dependent on the availability of environmental NO3-.

Environmental and Microbial Features Affecting Denitrification and Anammox Hotspots in an Estuarine Ecosystem

NASA Astrophysics Data System (ADS)

Lisa, J.; Song, B.; Lefcheck, J. S.; Tobias, C. R.

2016-02-01

Biogeochemical hotspots are characterized as a few sites that exhibit extremely high reaction rates relative to surrounding area, and often account for a high percentage of the overall reaction rates in an ecosystem. Criteria for quantitatively identifying these sites have not been well established. Further, the underlying mechanisms of hotspots have been described in terms of environmental conditions, with little attention paid to the microbial community. The objectives of this study were to establish quantitative criteria to identify denitrification and anammox hotspots, and determine the underlying microbial and environmental factors responsible for elevated N2 production. We used 15N isotope pairing incubation experiments to measure denitrification and anammox rates in the New River Estuary, NC. Quantitative PCR assays of nitrous oxide reductase (nosZ Clades I and II) and hydrazine oxidoreductase (hzo) genes were conducted to estimate denitrifier and anammox abundance. Structural Equation Modeling (SEM) was used to elucidate complex causal relationships between environmental and biological variables. Denitrification hotspots, quantitatively defined as statistical outliers, accounted for 35.6% total denitrification while comprising only 7.3% of the sites. Anammox hotspots,10.6% of the sites, accounted for 60.9% of total anammox. SEM revealed increased sediment organics at lower salinities supported higher functional gene abundance, which in turn resulted in higher N2 production. Surprisingly, denitrification rates were significantly and positively correlated with nosZ Clade II gene abundance, after accounting for the non-significant contributions of the naturally more abundant nosZ Clade I, and other environmental covariates. This is the first time that a quantitative definition of biogeochemical hotspots was put forth and used to determine the importance of anammox and denitrification hotspots in estuarine nitrogen removal capacity. Despite the low area coverage, denitrification and anammox hotspots are major nitrogen removal components and may play a significant role in mitigating eutrophication.

Low molecular carbon compounds present in the rhizosphere control denitrification kinetics

NASA Astrophysics Data System (ADS)

Herold, M.; Morley, N.; Baggs, E.

2013-12-01

Nitrogen and carbon cycles play key roles in plant-microbe interactions in soils. Carbon is supplied by plants to microbes in the form of root exudates which includes both high and low molecular compounds. Nitrogen in turn is taken up by plants and rhizosphere microbes metabolise nitrogen compounds in several biochemical pathways. The conversion of nitrogen compounds to volatile products in the process of denitrification leads to increasing amounts of nitrous oxide (N2O) in the atmosphere. Nitrous oxide is a potent greenhouse gas and increasing emissions of N2O through intense agriculture have lead to intensified research to find possible mitigation strategies to reduce N2O production from soil. In our study we show the effect of low molecular carbon compounds, typically found in root exudates, on the dynamics of denitrification as well as the dose response effect of the single compounds. The hypothesis was tested that different compound groups change the kinetics of the different reduction steps in the biochemical pathway of denitrification, which results in lower N2O production. Experiments were performed in soil-microcosms using 15N labelling approaches to monitor denitrification products . Microcosms were maintained as slurries in order to create oxygen limiting conditions, which favours denitrification. Carbon dioxide and N2O were monitored throughout the experiments and on three destructive sampling days NO3, NO2, NO and 15N-N2 were measured. Results showed that the denitrification process was differently affected by amino acids and organic acids with higher denitrification activity observed in the presence of organic acids. The dynamics of the single reduction steps were time dependent which indicates that substrate availability plays an important role in soil microbial activity. We concluded that the activity of denitrifiers are significantly influenced by different carbon compounds, and that further studies on the effects of the composition of root exudates could contribute to N2O mitigation strategies.

Control of denitrification in a septage-treating artificial wetland: the dual role of particulate organic carbon.

PubMed

Hamersley, M Robert; Howes, Brian L

2002-10-01

We examined the factors controlling organic carbon (C) cycling and its control of nitrogen (N) removal via denitrification in an aerated artificial wetland treating highly concentrated wastewater to nutrient-removal standards. Processing of organic material by the septage-treating wetland affected the biological reactivity (half-life, or t1/2) of organic C pools through microbial degradation and gravity fractionation of the influent septage. Primary sedimentation fractionated the initial septage material (t1/2 = 8.4d) into recalcitrant waste solids (t1/2 = 16.7d) and highly labile supernatant (t1/2 = 5.0d), allowing this reactive fraction to be further degraded during treatment in aerobic wetland tanks until a less labile material (t1/2 = 7.3d) remained. Organic C contributions from in situ fixation by nitrifying bacteria or algae in these tanks were small, about 1% of the C degradation rate. In the aerated tanks, denitrification was correlated with particulate organic C loading rates, although the average C required (0.35 mg C L(-1)h(-1)) to support denitrification was only 12% of the total C respiration rate (2.9 mg C L(-1)h(-1)). Additions of plant litter (2.5g C L(-1)) to the aerated tanks under normal operating conditions doubled denitrification rates to 0.58 mg N L(-1)h(-1), and reduced effluent nitrate levels by half, from 12.7 to 6.4 mg N L(-1). However, C degradation within the plant litter (0.15mg C L(-1)h(-1)) was sufficient to have accounted for only 35% of the additional denitrification. Evidence from laboratory and full-scale plant litter additions as well as process monitoring indicates that the stimulation of denitrification is due to the respiration-driven formation of anaerobic microsites within particulate organic C. In this aerated highly C-loaded septage-treating wetland, anaerobic microsite, rather than C substrate availability limits denitrification.

Using Pure Cultures to Define the Site Preference of Nitrous Oxide Produced by Microbial Nitrification and Denitrification

NASA Astrophysics Data System (ADS)

Sutka, R. L.; Breznak, J. A.; Ostrom, N. E.; Ostrom, P. H.; Gandhi, H.

2004-12-01

Defining the site preference of nitrous oxide (N2O) produced in pure culture studies is crucial to interpreting field data. We have previously demonstrated that the intramolecular distribution of nitrogen isotopes (isotopomers) can be used to differentiate N2O produced by nitrifier denitrification and nitrification in cultures of Nitrosomonas europaea. Here, we have expanded on our initial results and evaluated the isotopomeric composition of N2O produced during nitrification and nitrifier denitrification with cultures of Nitrosospira multiformis. In addition, we have analyzed N2O produced during methanotrophic nitrification, denitrification, and fungal denitrification. To evaluate N2O production during nitrification and nitrifier denitrification, we compared the site preference of N2O formed as a result of nitrite reduction and hydroxylamine oxidation with Nitrosomonas europaea and Nitrosospira multiformis. The average site preference of N2O produced by hydroxylamine oxidation was similar for Nitrosomonas europaea (33.0 ± 3.5 ‰ ) and Nitrosospira multiformis (33.1 ± 4.2 ‰ ). Nitrous oxide produced by nitrifier-denitrification by Nitrosomonas europaea and Nitrosospira multiformis had a similar site preference of - 1.4 ± 4.4 ‰ and - 1.1 ± 2.6 ‰ respectively. The results indicate that it is possible to differentiate between N2O produced by nitrite reduction and hydroxylamine oxidation by ammonia oxidizing bacteria. Methanotrophic nitrification was evaluated by analyzing the N2O produced during hydroxylamine oxidation in concentrated cell suspensions of two methane oxidizing bacteria. The site preference of N2O produced by the two methane oxidizers, Methylococcus capsulatus Bath and Methylosinus trichosporium was 31.8 ± 4.7 ‰ and 33.0 ± 4.5 ‰ respectively. The results indicate that a site preference of 33 ‰ is applicable for nitrification regardless of whether a methane oxidizer or ammonia oxidizer is involved in the reaction. To determine the site preference of N2O produced during denitrification we used concentrated cell suspensions of two organisms (Pseudomonas chlororaphis and Pseudomonas aureofaciens) that lack N2O reductase. The site preference of N2O produced during nitrite reduction was similar for P. chlororaphis (0.3 ± 2.7 ‰ ) and P. aureofaciens (- 0.3 ± 1.7 ‰ ). The results indicate that the site preference of N2O produced during nitrite reduction is 0 ‰ regardless of whether the organism is a denitrifier or nitrifier. Fungal denitrification was investigated using pure cultures of Fusarium oxysporum and Cylindrocarpon tonkinense. The site preference of N2O produced during nitrite reduction was similar for the cultures with an average site preference of 34.7 ± 2.2 ‰ for Fusarium oxysporum and 29.7 ± 1.7 ‰ for Cylindrocarpon tonkinense. The data indicate that fungal denitrification and bacterial denitrification can be distinguished based on site preference. The results from all of the pure culture studies indicate that isotopomers can be used to apportion bacterial nitrification and denitrification and in field studies.

In Situ Denitrification and Biological Nitrogen Fixation Under Enhanced Atmospheric Reactive Nitrogen Deposition in UK Peatlands

NASA Astrophysics Data System (ADS)

Ullah, Sami; Saiz Val, Ernesto; Sgouridis, Fotis; Peichl, Matthias; Nilsson, Mats

2017-04-01

Dinitrogen (N2) and nitrous oxide (N2O) losses due to denitrification and biological N2 fixation (BNF) are the most uncertain components of the nitrogen (N) cycle in peatlands under enhanced atmospheric reactive nitrogen (Nr) deposition. This uncertainty hampers our ability to assess the contribution of denitrification to the removal of biologically fixed and/or atmospherically deposited Nr in peatlands. This uncertainty emanates from the difficulty in measuring in situ soil N2 and N2O production and consumption in peatlands. In situ denitrification and its contribution to total N2O flux was measured monthly between April 2013 and October 2014 in peatlands in two UK catchments. An adapted 15N-Gas Flux method1 with low level addition of 15N tracer (0.03 ± 0.005 kg 15N ha-1) was used to measure denitrification and its contribution to net N2O production (DN2O/TN2O). BNF was measured in situ through incubation of selected sphagnum species under 15N2 gas tracer. Denitrification2 varied temporally and averaged 8 kg N-N2 ha-1 y-1. The contribution of denitrification was about 48% to total N2O flux3 of 0.05 kg N ha-1 y-1. Soil moisture, temperature, ecosystem respiration, pH and mineral N content mainly regulated the flux of N2 and N2O. Preliminary results showed suppression of BNF, which was 1.8 to 7 times lower in peatland mosses exposed to ˜15 to 20 kg N ha-1 y-1 Nr deposition in the UK than in peatland mosses in northern Sweden with background Nr deposition. Overall, the contribution of denitrification to Nr removal in the selected peatlands was ˜50% of the annual Nr deposition rates, making these ecosystems vulnerable to chronic N saturation. These results point to a need for a more comprehensive annual BNF measurement to more accurately account for total Nr input into peatlands and its atmospheric loss due to denitrification. References Sgouridis F, Stott A & Ullah S, 2016. Application of the 15N-Gas Flux method for measuring in situ N2 and N2O fluxes due to denitrification in natural and semi-natural terrestrial ecosystems and comparison with the acetylene inhibition technique. Biogeosciences, 13, 1821-1835. Sgouridis F and Ullah S. 2015. Relative magnitude and controls of in situ N2 and N2O fluxes due to denitrification in natural and semi-natural terrestrial ecosystems using 15N tracers. Environmental Science & Technology, vol. 49(24), 14110-14119. Sgouridis F and Ullah S. 2017. Environmental controls on soil greenhouse gas (CO2, CH4, N2O) fluxes and the partitioning of N2O sources in natural and semi-natural land use types in the UK. JGR-B (under review)

Denitrification controls in urban riparian soils: implications for reducing urban nonpoint source nitrogen pollution.

PubMed

Li, Yangjie; Chen, Zhenlou; Lou, Huanjie; Wang, Dongqi; Deng, Huanguang; Wang, Chu

2014-09-01

The purpose of this research was to thoroughly analyze the influences of environmental factors on denitrification processes in urban riparian soils. Besides, the study was also carried out to identify whether the denitrification processes in urban riparian soils could control nonpoint source nitrogen pollution in urban areas. The denitrification rates (DR) over 1 year were measured using an acetylene inhibition technique during the incubation of intact soil cores from six urban riparian sites, which could be divided into three types according to their vegetation. The soil samples were analyzed to determine the soil organic carbon (SOC), soil total nitrogen (STN), C/N ratio, extractable NO3 (-)-N and NH4 (+)-N, pH value, soil water content (SWC), and the soil nitrification potential to evaluate which of these factors determined the final outcome of denitrification. A nitrate amendment experiment further indicated that the riparian DR was responsive to added nitrate. Although the DRs were very low (0.099 ~ 33.23 ng N2O-N g(-1) h(-1)) due to the small amount of nitrogen moving into the urban riparian zone, the spatial and temporal patterns of denitrification differed significantly. The extractable NO3 (-)-N proved to be the dominant factor influencing the spatial distribution of denitrification, whereas the soil temperature was a determinant of the seasonal DR variation. The six riparian sites could also be divided into two types (a nitrate-abundant and a nitrate-stressed riparian system) according to the soil NO3 (-)-N concentration. The DR in nitrate-abundant riparian systems was significantly higher than that in the nitrate-stressed riparian systems. The DR in riparian zones that were covered with bushes and had adjacent cropland was higher than in grass-covered riparian sites. Furthermore, the riparian DR decreased with soil depth, which was mainly attributed to the concentrated nitrate in surface soils. The DR was not associated with the SOC, STN, C/N ratio, and pH. Nitrate supply and temperature finally decided the spatiotemporal distribution patterns of urban riparian denitrification. Considering both the low DR of existing riparian soils and the significance of nonpoint source nitrogen pollution, the substantial denitrification potential of urban riparian soils should be utilized to reduce nitrogen pollution using proper engineering measures that would collect the polluted urban rainfall runoff and make it flow through the riparian zones.

Denitrification in the Arabian Sea: A 3D ecosystem modelling study

NASA Astrophysics Data System (ADS)

Anderson, Thomas R.; Ryabchenko, Vladimir A.; Fasham, Michael J. R.; Gorchakov, Victor A.

2007-12-01

A three-dimensional hydrodynamic-ecosystem model was used to examine the factors determining the spatio-temporal distribution of denitrification in the Arabian Sea. The ecosystem model includes carbon and nitrogen as currencies, cycling of organic matter via detritus and dissolved organic matter, and both remineralization and denitrification as sinks for material exported below the euphotic zone. Model results captured the marked seasonality in plankton dynamics of the region, with characteristic blooms of chlorophyll in the coastal upwelling regions and central Arabian Sea during the southwest monsoon, and also in the northern Arabian Sea during the northeast monsoon as the mixed layer shoals. Predicted denitrification was 26.2 Tg N yr -1,the greatest seasonal contribution being during the northeast monsoon when primary production is co-located with the zone of anoxia. Detritus was the primary organic substrate consumed in denitrification (97%), with a small (3%) contribution by dissolved organic matter. Denitrification in the oxygen minimum zone was predicted to be fuelled almost entirely by organic matter supplied by particles sinking vertically from the euphotic zone above (0.73 mmol N m -2 d -1) rather than from lateral transport of organic matter from elsewhere in the Arabian Sea (less than 0.01 mmol N m -2 d -1). Analysis of the carbon budget in the zone of denitrification (north of 10°N and east of 55°E) indicates that the modelled vertical export flux of detritus, which is similar in magnitude to estimates from field data based on the 234Th method, is sufficient to account for measured bacterial production below the euphotic zone in the Arabian Sea.

Denitrification in Agricultural Soils: Integrated control and Modelling at various scales (DASIM)

NASA Astrophysics Data System (ADS)

Müller, Christoph; Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole; Müller, Carsten

2016-04-01

The new research unit DASIM brings together the expertise of 11 working groups to study the process of denitrification at unprecedented spatial and temporal resolution. Based on state-of-the art analytical techniques our aim is to develop improved denitrification models ranging from the microscale to the field/plot scale. Denitrification, the process of nitrate reduction allowing microbes to sustain respiration under anaerobic conditions, is the key process returning reactive nitrogen as N2to the atmosphere. Actively denitrifying communities in soil show distinct regulatory phenotypes (DRP) with characteristic controls on the single reaction steps and end-products. It is unresolved whether DRPs are anchored in the taxonomic composition of denitrifier communities and how environmental conditions shape them. Despite being intensively studied for more than 100 years, denitrification rates and emissions of its gaseous products can still not be satisfactorily predicted. While the impact of single environmental parameters is well understood, the complexity of the process itself with its intricate cellular regulation in response to highly variable factors in the soil matrix prevents robust prediction of gaseous emissions. Key parameters in soil are pO2, organic matter content and quality, pH and the microbial community structure, which in turn are affected by the soil structure, chemistry and soil-plant interactions. In the DASIM research unit, we aim at the quantitative prediction of denitrification rates as a function of microscale soil structure, organic matter quality, DRPs and atmospheric boundary conditions via a combination of state-of-the-art experimental and analytical tools (X-ray μCT, 15N tracing, NanoSIMS, microsensors, advanced flux detection, NMR spectroscopy, and molecular methods including next generation sequencing of functional gene transcripts). We actively seek collaboration with researchers working in the field of denitrification.

Groundwater nitrate reduction versus dissolved gas production: A tale of two catchments.

PubMed

McAleer, E B; Coxon, C E; Richards, K G; Jahangir, M M R; Grant, J; Mellander, Per E

2017-05-15

At the catchment scale, a complex mosaic of environmental, hydrogeological and physicochemical characteristics combine to regulate the distribution of groundwater and stream nitrate (NO 3 - ). The efficiency of NO 3 - removal (via denitrification) versus the ratio of accumulated reaction products, dinitrogen (excess N 2 ) & nitrous oxide (N 2 O), remains poorly understood. Groundwater was investigated in two well drained agricultural catchments (10km 2 ) in Ireland with contrasting subsurface lithologies (sandstone vs. slate) and landuse. Denitrification capacity was assessed by measuring concentration and distribution patterns of nitrogen (N) species, aquifer hydrogeochemistry, stable isotope signatures and aquifer hydraulic properties. A hierarchy of scale whereby physical factors including agronomy, water table elevation and permeability determined the hydrogeochemical signature of the aquifers was observed. This hydrogeochemical signature acted as the dominant control on denitrification reaction progress. High permeability, aerobic conditions and a lack of bacterial energy sources in the slate catchment resulted in low denitrification reaction progress (0-32%), high NO 3 - and comparatively low N 2 O emission factors (EF 5g 1). In the sandstone catchment denitrification progress ranged from 4 to 94% and was highly dependent on permeability, water table elevation, dissolved oxygen concentration solid phase bacterial energy sources. Denitrification of NO 3 - to N 2 occurred in anaerobic conditions, while at intermediate dissolved oxygen; N 2 O was the dominant reaction product. EF 5g 1 (mean: 0.0018) in the denitrifying sandstone catchment was 32% less than the IPCC default. The denitrification observations across catchments were supported by stable isotope signatures. Stream NO 3 - occurrence was 32% lower in the sandstone catchment even though N loading was substantially higher than the slate catchment. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Limited occurrence of denitrification in four shallow aquifers in agricultural areas of the United States

USGS Publications Warehouse

Green, C.T.; Puckett, L.J.; Böhlke, J.K.; Bekins, B.A.; Phillips, S.P.; Kauffman, L.J.; Denver, J.M.; Johnson, H.M.

2008-01-01

The ability of natural attenuation to mitigate agricultural nitrate contamination in recharging aquifers was investigated in four important agricultural settings in the United States. The study used laboratory analyses, field measurements, and flow and transport modeling for monitoring well transects (0.5 to 2.5 km in length) in the San Joaquin watershed, California, the Elkhorn watershed, Nebraska, the Yakima watershed, Washington, and the Chester watershed, Maryland. Ground water analyses included major ion chemistry, dissolved gases, nitrogen and oxygen stable isotopes, and estimates of recharge date. Sediment analyses included potential electron donors and stable nitrogen and carbon isotopes. Within each site and among aquifer-based medians, dissolved oxygen decreases with ground water age, and excess N2 from denitrification increases with age. Stable isotopes and excess N2 imply minimal denitrifying activity at the Maryland and Washington sites, partial denitrification at the California site, and total denitrification across portions of the Nebraska site. At all sites, recharging electron donor concentrations are not sufficient to account for the losses of dissolved oxygen and nitrate, implying that relict, solid phase electron donors drive redox reactions. Zero-order rates of denitrification range from 0 to 0.14 μmol N L−1d−1, comparable to observations of other studies using the same methods. Many values reported in the literature are, however, orders of magnitude higher, which is attributed to a combination of method limitations and bias for selection of sites with rapid denitrification. In the shallow aquifers below these agricultural fields, denitrification is limited in extent and will require residence times of decades or longer to mitigate modern nitrate contamination.

Factors controlling nitrate fluxes in groundwater in agricultural areas

USGS Publications Warehouse

Liao, Lixia; Green, Christopher T.; Bekins, Barbara A.; Böhlke, J.K.

2012-01-01

The impact of agricultural chemicals on groundwater quality depends on the interactions of biogeochemical and hydrologic factors. To identify key processes affecting distribution of agricultural nitrate in groundwater, a parsimonious transport model was applied at 14 sites across the U.S. Simulated vertical profiles of NO3-, N2 from denitrification, O2, Cl-, and environmental tracers of groundwater age were matched to observations by adjusting the parameters for recharge rate, unsaturated zone travel time, fractions of N and Cl- inputs leached to groundwater, O2 reduction rate, O2 threshold for denitrification, and denitrification rate. Model results revealed important interactions among biogeochemical and physical factors. Chloride fluxes decreased between the land surface and water table possibly because of Cl- exports in harvested crops (averaging 22% of land-surface Cl- inputs). Modeled zero-order rates of O2 reduction and denitrification were correlated. Denitrification rates at depth commonly exceeded overlying O2 reduction rates, likely because shallow geologic sources of reactive electron donors had been depleted. Projections indicated continued downward migration of NO3- fronts at sites with denitrification rates -1 yr-1. The steady state depth of NO3- depended to a similar degree on application rate, leaching fraction, recharge, and NO3- and O2 reaction rates. Steady state total mass in each aquifer depended primarily on the N application rate. In addition to managing application rates at land surface, efficient water use may reduce the depth and mass of N in groundwater because lower recharge was associated with lower N fraction leached. Management actions to reduce N leaching could be targeted over aquifers with high-recharge and low-denitrification rates.

Mustard catch crop enhances denitrification in shallow groundwater beneath a spring barley field.

PubMed

Jahangir, M M R; Minet, E P; Johnston, P; Premrov, A; Coxon, C E; Hackett, R; Richards, K G

2014-05-01

Over-winter green cover crops have been reported to increase dissolved organic carbon (DOC) concentrations in groundwater, which can be used as an energy source for denitrifiers. This study investigates the impact of a mustard catch crop on in situ denitrification and nitrous oxide (N2O) emissions from an aquifer overlain by arable land. Denitrification rates and N2O-N/(N2O-N+N2-N) mole fractions were measured in situ with a push-pull method in shallow groundwater under a spring barley system in experimental plots with and without a mustard cover crop. The results suggest that a mustard cover crop could substantially enhance reduction of groundwater nitrate NO3--N via denitrification without significantly increasing N2O emissions. Mean total denitrification (TDN) rates below mustard cover crop and no cover crop were 7.61 and 0.002 μg kg(-1) d(-1), respectively. Estimated N2O-N/(N2O-N+N2-N) ratios, being 0.001 and 1.0 below mustard cover crop and no cover crop respectively, indicate that denitrification below mustard cover crop reduces N2O to N2, unlike the plot with no cover crop. The observed enhanced denitrification under the mustard cover crop may result from the higher groundwater DOC under mustard cover crop (1.53 mg L(-1)) than no cover crop (0.90 mg L(-1)) being added by the root exudates and root masses of mustard. This study gives insights into the missing piece in agricultural nitrogen (N) balance and groundwater derived N2O emissions under arable land and thus helps minimise the uncertainty in agricultural N and N2O-N balances. Copyright © 2013 Elsevier Ltd. All rights reserved.

Nutrient Removal through Oyster Habitat Restoration in the Indian River Lagoon, Florida

NASA Astrophysics Data System (ADS)

Gallagher, S. M.; Schmidt, C. A.; Walters, L.; Blank, R.

2017-12-01

In 2016, an algae bloom in the Indian River Lagoon (IRL) caused a state of emergency in Florida. As with many estuaries, nutrient loading in the IRL has led to periodic eutrophication. While previous studies have shown oyster bed restoration reduces suspended organic matter in estuaries, similar reductions to net nutrient loads are not well established. In addition, previous studies have focused on seasonal variation rather than ongoing yearly effects. Here, we determine the net nitrogen and phosphorus effects of oyster restoration in the IRL over seven years. Analysis of aerial images from 1943 and 2009 showed 14.7 ha of oyster beds were destroyed by boat traffic in the IRL (40% loss). According to our measurements of restored oyster bed sediment, this equates to a maximum of 1,580,000 kg•N•yr-1 of lost denitrification potential; this is equivalent to 150% of estimated current nitrogen loading in the IRL. Oyster restoration began in the IRL in 2007 and has recovered 7.7% of the lost beds and denitrification potential (1.13 ha and 107,000 kg•N•yr-1•ha-1). In all cases, denitrification reached a maximum within two years and remained significantly higher than open sediment for at least the seven years observed. Denitrification benefits came at the cost of mobilizing a maximum of 3450 kg ha-1 of recalcitrant phosphorus from restored bed sediment. This effect was limited to the two years following restoration, whereas increased denitrification was ongoing. Overall, our results show oyster restoration achieved maximum denitrification within two years and maintained significant denitrification benefits for at least seven years. In addition, our results are useful for future oyster restoration projects since they quantify nitrogen benefits in terms of phosphorus mobilization.

Labile Dissolved Organic Carbon Availability Controls Hyporheic Denitrification: a 15N Tracer Study

NASA Astrophysics Data System (ADS)

Zarnetske, J. P.; Haggerty, R.; Wondzell, S. M.; Baker, M. A.

2009-12-01

We used an in situ 15N-labeled nitrate (15NO3-) and acetate injection experiment to determine how the availability of labile dissolved organic carbon (DOC) as acetate influences microbial denitrification in the hyporheic zone (HZ) of an upland (3rd-order) agricultural stream. A 48 h steady-state injection of a conservative tracer, chloride, and 15NO3- was used to quantify ambient HZ denitrification via 15N2 production. Following ambient plateau measurements of denitrification during the first 24 h, a second conservative tracer, bromide, and labile DOC source, acetate, were co-injected for an additional 24 h to measure HZ denitrification under increased DOC supply. Conservative tracers were observed at 4 of the 6 down gradient wells. Receiving wells represented HZ median residence times of 7.0 to 13.1 h, nominal flowpath lengths of 0.7 to 3.7 m, and hypoxic conditions (7.5 to 9.3 mg-O2 L-1 deficit). All 4 receiving wells demonstrated 15N2 production during ambient conditions indicating that the HZ was an active denitrification environment. Acetate addition stimulated significant increases in 15N2 production by factors of 2.7 to 26.1 in all receiving wells, and significant decreases of NO3- and DOC aromaticity (via SUVA254) in the two wells most hydrologically connected to the injection. In all receiving wells, increases of bromide and 15N2 production occurred without concurrent increases in acetate indicating that 100% of acetate was retained in the HZ, a portion of which is due to biological consumption. These results support our hypothesis that microbial denitrification in anaerobic portions of the hyporheic zone is limited by labile DOC supply.

Alteration of intracellular protein expressions as a key mechanism of the deterioration of bacterial denitrification caused by copper oxide nanoparticles.

PubMed

Su, Yinglong; Zheng, Xiong; Chen, Yinguang; Li, Mu; Liu, Kun

2015-10-28

The increasing production and utilization of copper oxide nanoparticles (CuO NPs) result in the releases into the environment. However, the influence of CuO NPs on bacterial denitrification, one of the most important pathways to transform nitrate to dinitrogen in environment, has seldom been studied. Here we reported that CuO NPs caused a significant alteration of key protein expressions of a model denitrifier, Paracoccus denitrificans, leading to severe inhibition to denitrification. Total nitrogen removal efficiency was decreased from 98.3% to 62.1% with the increase of CuO NPs from 0.05 to 0.25 mg/L. Cellular morphology and integrity studies indicated that nanoparticles entered the cells. The proteomic bioinformatics analysis showed that CuO NPs caused regulation of proteins involved in nitrogen metabolism, electron transfer and substance transport. The down-regulation of GtsB protein (responsible for glucose transport) decreased the production of NADH (electron donor for denitrification). Also, the expressions of key electron-transfer proteins (including NADH dehydrogenase and cytochrome) were suppressed by CuO NPs, which adversely affected electrons transfer for denitrification. Further investigation revealed that CuO NPs significantly inhibited the expressions and catalytic activities of nitrate reductase and nitrite reductase. These results provided a fundamental understanding of the negative influences of CuO NPs on bacterial denitrification.

Alteration of intracellular protein expressions as a key mechanism of the deterioration of bacterial denitrification caused by copper oxide nanoparticles

PubMed Central

Su, Yinglong; Zheng, Xiong; Chen, Yinguang; Li, Mu; Liu, Kun

2015-01-01

The increasing production and utilization of copper oxide nanoparticles (CuO NPs) result in the releases into the environment. However, the influence of CuO NPs on bacterial denitrification, one of the most important pathways to transform nitrate to dinitrogen in environment, has seldom been studied. Here we reported that CuO NPs caused a significant alteration of key protein expressions of a model denitrifier, Paracoccus denitrificans, leading to severe inhibition to denitrification. Total nitrogen removal efficiency was decreased from 98.3% to 62.1% with the increase of CuO NPs from 0.05 to 0.25 mg/L. Cellular morphology and integrity studies indicated that nanoparticles entered the cells. The proteomic bioinformatics analysis showed that CuO NPs caused regulation of proteins involved in nitrogen metabolism, electron transfer and substance transport. The down-regulation of GtsB protein (responsible for glucose transport) decreased the production of NADH (electron donor for denitrification). Also, the expressions of key electron-transfer proteins (including NADH dehydrogenase and cytochrome) were suppressed by CuO NPs, which adversely affected electrons transfer for denitrification. Further investigation revealed that CuO NPs significantly inhibited the expressions and catalytic activities of nitrate reductase and nitrite reductase. These results provided a fundamental understanding of the negative influences of CuO NPs on bacterial denitrification. PMID:26508362

Relative importance of time, land use and lithology on determining aquifer-scale denitrification

NASA Astrophysics Data System (ADS)

Kolbe, Tamara; de Dreuzy, Jean-Raynald; Abbott, Benjamin W.; Marçais, Jean; Babey, Tristan; Thomas, Zahra; Peiffer, Stefan; Aquilina, Luc; Labasque, Thierry; Laverman, Anniet; Fleckenstein, Jan; Boulvais, Philippe; Pinay, Gilles

2017-04-01

Unconfined shallow aquifers are commonly contaminated by nitrate in agricultural regions, because of excess fertilizer application over the last decades. Watershed studies have indicated that 1) changes in agricultural practices have caused changes in nitrate input over time, 2) denitrification occurs in localized hotspots within the aquifer, and 3) heterogeneous groundwater flow circulation has led to strong nitrate gradients in aquifers that are not yet well understood. In this study we investigated the respective influence of land use, groundwater transit time distribution, and hotspot distribution on groundwater denitrification with a particular interest on how a detailed understanding of transit time distributions could be used to upscale the point denitrification measurements to the aquifer-scale. We measured CFC-based groundwater age, oxygen, nitrate, and dinitrogen gas excess in 16 agricultural wells of an unconfined crystalline aquifer in Brittany, France. Groundwater age data was used to calibrate a mechanistic groundwater flow model of the study site. Historical nitrate inputs were reconstructed by using measured nitrate concentrations, dinitrogen gas excess and transit time distributions of the wells. Field data showed large differences in denitrification activity among wells, strongly associated with differences in transit time distribution. This suggests that knowing groundwater flow dynamics and consequent transit time distributions at the catchment-scale could be used to estimate the overall denitrification capacity of agricultural aquifers.

Effect of Chlorella sorokiniana on the biological denitrification of drinking water.

PubMed

Petrovič, Aleksandra; Simonič, Marjana

2015-04-01

The influence of Chlorella sorokiniana on drinking water's biological denitrification was studied at two different initial nitrate concentrations, 50 and 100 mg/L, respectively. Sucrose and grape juice were used as carbon sources. The experiments showed that the denitrification process in the presence of algae was, even at low concentrations, i.e. 50 mg/L of nitrate, slower than without them, but yet still more than 95% of nitrate was removed in 24 h. It was also discovered that, with the addition of ammonium and urea, the urea interfered much more with the denitrification process, as less than 50% of the initial nitrate was removed. However, algae did not contribute to the nitrate and ammonium removals, as the final concentrations of both in the presence of algae were higher by approx 5%. At 100 mg/L of initial nitrate, the denitrification kinetics in the presence of algae was apparently slower regarding those experiments at lower levels of nitrate and only 65-70% of nitrate was removed over 24 h. Using grape juice instead of sucrose improved the nitrate removal slightly.

Nitrogen removal through N cycling from sediments in a constructed coastal marsh as assessed by 15N-isotope dilution.

PubMed

Ro, Hee-Myong; Kim, Pan-Gun; Park, Ji-Suk; Yun, Seok-In; Han, Junho

2018-04-01

Constructed coastal marsh regulates land-born nitrogen (N) loadings through salinity-dependent microbial N transformation processes. A hypothesis that salinity predominantly controls N removal in marsh was tested through incubation in a closed system with added- 15 NH 4 + using sediments collected from five sub-marshes in Shihwa marsh, Korea. Time-course patterns of concentrations and 15 N-atom% of soil-N pools were analyzed. Sediments having higher salinity and lower soil organic-C and acid-extractable organic-N exhibited slower rates of N mineralization and immobilization, nitrification, and denitrification. Rates of denitrification were not predicted well by sediment salinity but by its organic-C, indicating heterotrophic denitrification. Denitrification dominated N-loss from this marsh, and nitrogen removal capacity of this marsh was estimated at 337 kg N day -1 (9.9% of the daily N-loadings) considering the current rooting depth of common reeds (1.0 m). We showed that sediment N removal decreases with increasing salinity and can increase with increasing organic-C for heterotrophic denitrification. Copyright © 2018 Elsevier Ltd. All rights reserved.

Impact of partial nitritation degree and C/N ratio on simultaneous Sludge Fermentation, Denitrification and Anammox process.

PubMed

Wang, Bo; Peng, Yongzhen; Guo, Yuanyuan; Yuan, Yue; Zhao, Mengyue; Wang, Shuying

2016-11-01

This study presents a novel process (i.e. PN/SFDA) to remove nitrogen from low C/N domestic wastewater. The process mainly involves two reactors, a pre-Sequencing Batch Reactor for partial nitritation (termed as PN-SBR) and an anoxic reactor for integrated Denitrification and Anammox with carbon sources produced from Sludge Fermentation (termed as SFDA). During long-term Runs, NO2(-)/NH4(+) ratio (i.e. NO2(-)-N/NH4(+)-N calculated by mole) in the PN-SBR effluent was gradually increased from 0.2 to 37 by extending aerobic duration, meaning that partial nitritation turning to full nitritation could be achieved. Impact of partial nitritation degree on SFDA process was investigated and the result showed that, NO2(-)/NH4(+) ratios between 2 and 10 were appropriate for the co-existence of denitrification and anammox together in the SFDA reactor, and denitrification instead of anammox contributed greater for nitrogen removal. Further batch tests indicated that anammox collaborated well with denitrification at low C/N (1.0 in this study). Copyright © 2016 Elsevier Ltd. All rights reserved.

Effect of temperature on anoxic sulfide oxidation and denitrification in the bulk wastewater phase of sewer networks.

PubMed

Mathioudakis, V L; Aivasidis, A

2009-01-01

Artificial dosage of nitrate in sewer networks is considered as one of the most effective methods for odor and corrosion control. However, there is limited knowledge on the effect of temperature on the transformations that takes place during anoxic conditions. Thus, two groups of batch experiments were conducted to gain insight in the involved processes in bulk phase of a septic municipal wastewater. It can be concluded that sewer denitrification, in bulk phase, can be simplified in three stages. According to the experimental results, nitrate or nitrite is utilized for autotrophic denitrification with sulfide, while heterotrophic utilization is initiated after the completion of anoxic sulfide oxidation. Moreover, temperature is proved to have a significant impact on sewer denitrification kinetic profile, as it determines the extent of temporal nitrite accumulation. The temperature coefficient of each anoxic process, including sulfide oxidation, nitrate utilization and denitrification/nitrite utilization is experimentally calculated and temperature dependent equations are developed, providing the rate of all anoxic processes in bulk phase of sewer wastewater, in any given temperature.

Biological nitrification/denitrification of high sodium nitrite (navy shipyard) wastewater.

PubMed

Kamath, S; Sabatini, D A; Canter, L W

1991-01-01

In the hydroblasting of ships' boiler tubes, a wastewater high in nitrite (as high as 1200 mg litre(-1)) is produced by the US Navy. This research has evaluated the use of a suspended-growth biological system to treat this wastewater by denitrification. Two biological treatment configurations were evaluated (direct denitrification versus nitrification/denitrification) with nitrification/denitrification producing better nitrite removal efficiencies (54 to 62% versus 40%, respectively). The introduction of metals (cadmium, chromium, lead, copper and iron) in concentrations typical for this wastewater did not inhibit the nitrite removal efficiencies. The influent metal concentrations ranged from 0.02 mg litre(-1) for cadmium to 22 mg litre(-1) for iron and the metal removal efficiencies ranged from 4.8% for cadmium to 50% for copper. Increasing sludge age resulted in improved nitrite removal efficiencies (52%, 57% and 74% for sludge ages of 4, 6 and 8 days, respectively). The resulting biokinetic constants were similar to those reported by others for lower influent concentrations of nitrite or nitrate (Ygs=0.02 mg/mg; Ygn=0.16 mg/mg; Yb=0.8 mg/mg; and b=0.006 h(-1)).

Effect of dissolved oxygen on biological denitrification using biodegradable plastic as the carbon source

NASA Astrophysics Data System (ADS)

Zhang, Xucai; Zhang, Jianmei

2018-02-01

Biological denitrification is currently a common approach to remove nitrate from wastewater. This study was conducted to evaluate the influence of dissolved oxygen on denitrification in wastewater treatment using biodegradable plastic as carbon source by designing the aerated, anoxic, and low-oxygen experimental treatment groups. The results showed that the removal rates of nitrate in anoxic and low-oxygen groups were 30.6 g NO3 --Nm-3 d-1 and 30.8 g NO3 --N m-3 d-1 at 83 h, respectively, both of which were higher than that of the aerated group. There was no significant difference between the anoxic and low-oxygen treatment groups for the nitrate removal. Additional, the nitrite accumulated during the experiments, and the nitrite concentrations in anoxic and aerated groups were lower than those in low-oxygen group. No nitrite was detected in all groups at the end of the experiments. These findings indicated that dissolved oxygen has important influence on denitrification, and anoxic and low-oxygen conditions can support completely denitrification when using BP as carbon source in nitrate-polluted wastewater treatment.

The use of fermentation liquid of wastewater primary sedimentation sludge as supplemental carbon source for denitrification based on enhanced anaerobic fermentation.

PubMed

Liu, Feng; Tian, Yu; Ding, Yi; Li, Zhipeng

2016-11-01

Wastewater primary sedimentation sludge was prepared into fermentation liquid as denitrification carbon source, and the main components of fermentation liquid was short-chain volatile fatty acids. Meanwhile, the acetic acid and propionic acid respectively accounted for about 29.36% and 26.56% in short-chain volatile fatty acids. The performance of fermentation liquid, methanol, acetic acid, propionic acid and glucose used as sole carbon source were compared. It was found that the denitrification rate with fermentation liquid as carbon source was 0.17mgNO3(-)-N/mg mixed liquor suspended solid d, faster than that with methanol, acetic acid, and propionic acid as sole carbon source, and lower than that with glucose as sole carbon source. For the fermentation liquid as carbon source, the transient accumulation of nitrite was insignificantly under different initial total nitrogen concentration. Therefore, the use of fermentation liquid for nitrogen removal could improve denitrification rate, and reduce nitrite accumulation in denitrification process. Copyright © 2016 Elsevier Ltd. All rights reserved.

The effect of carbon as an energy source for biological denitrification through Pseudomonas stutzeri.

PubMed

Shivran, Hari Singh; Kumar, S; Kumar, Dinesh; Singh, R V

2005-04-01

The biological denitrification processes possess many advantages in comparison to other denitrification processes. The present study was undertaken to observe the effect of quantity of carbon on biological denitrification with Pseudomonas stutzeri at different C/N ratios. The results obtained in the present investigations show that the pH and alkalinity of the effluent increased with increase in C/N ratio due to alkalinity generated during denitrification. The COD of the influent was increased with increase in C/N ratio. The effluent COD was nil under pseudo-steady state condition up to the C/N ratio of 2.5. Above this C/N ratio, the organics started entering in the treated water. The maximum feasible economic reduction of NO(3-)N from 51.6 mg/l to 1.2 mg/l occurred at C/N ratio of 2.5 and the obtained concentration of NO(3-)N was found to be lower than the tolerance limit (10 mg/l) prescribed by the WHO. The present work provides a feasible approach for a more efficient NO(3-)N removal process.

Nitric oxide in denitrification - an elusive signal molecule emitted from soil

NASA Astrophysics Data System (ADS)

Bakken, L. R.; Frostegard, A.

2010-12-01

Soils emit variable amounts of NO and N2O, with environmental consequences (atmosphere chemistry and global warming). Nitrification was for some time considered the main source of NO emission, but several investigations have indicated that denitrification may be a potent source as well. However, strong emission of NO from denitrifying organisms is in some conflict with common understanding of the role of NO in the regulation of denitrification, as based on paradigm model strains. NO appears to be an important signal molecule for denitrifying organisms by exerting a positive feedback on the expression of the genes coding for denitrification. On the other hand, a careful control of the NO concentrations at nanomolar concentrations has long been considered an essential fitness character for denitrifying organisms, since micromolar concentrations of NO is toxic to many organisms. For the same reason, organisms lacking genes encoding NO reductase (NOR) have been considered unfit for denitrification. This view is challenged by isolation of organisms whose primary product of denitrification is NO, either because they lack the genes for NO reductase, or because their synthesis of the denitrification proteome is extremely unbalanced, resulting in transient NO accumulation to micromolar concentrations when grown in pure culture. Such paralyzing NO concentrations are probably never reached in natural environments, however, due to diffusion and NO-absorption by adjacent organisms, be it by NOR or other NO scavenging enzymes. Hypothetically, the production of NO by denitrifying organisms may be an advantage by fending off nearby competitors. We have embarked on a comparative study of denitrification phenotypes regarding their denitrification gene expression and control of NO and N2O concentrations in response to anoxic spells. This includes model strains (Paracoccus denitrificans and Agrobacterium tumefaciens) and recently isolated strains within several genera. Some are found to robustly control NO at nanomolar levels, others reach micromolar concentrations of NO. These phenotypes appear to be congruent with phylogeny: closely related strains have very similar phenotypes regarding NO concentrations. This contrasts N2O production, which appears not to be related to phylogeny. We hypothesize that community DNA or transcriptome analyses may have predictive capacity for a soil’s propensity to produce NO but not N2O. More data on the relationship between phylogeny and phenotypes is clearly needed, however. Biogeochemical models of denitrification and its NO and N2O emission are based on a ”community phenotype”. In theory, the characteristics of this community phenotype could be predicted by analyses of community DNA or transcriptomes, but to reach this goal we need more information about the genotype/phenotype relationship.

Isotopic signals from precipitation and denitrification in nitrate in a northern hardwood forest

NASA Astrophysics Data System (ADS)

Goodale, C. L.; Wexller, S.

2012-12-01

Denitrification can represent an important term in the nitrogen budget of small catchments; however, this process varies greatly over space and time and is notoriously difficult to quantify. Measurements of the natural abundance of stable isotopes of nitrogen and oxygen in dissolved nitrate in stream- and river water can sometimes provide evidence of denitrification, particularly in large river basins or agriculturally impacted catchments. To date, however, this approach has provided little to no evidence of denitrification in catchments in temperate forests. Here, we examined d15N and d18O of nitrate in water samples collected during summer 2011 not only from streams and precipitation, but also from groundwater from the hydrologic reference watershed (W3) drained by Paradise Brook, at the Hubbard Brook Experimental Forest, in the White Mountains, New Hampshire. Despite low nitrate concentrations (< 0.5 to 8.8 uM nitrate) dual-isotopic signals of nitrate sources and nitrogen cycle processes were clearly distinguishable, including sources from atmospheric deposition, and from nitrification of atmospheric ammonium and from or soil organic nitrogen, as well as nitrate affected by soil denitrification. An atmospheric signal from nitrate in precipitation (enriched with 18O) was observed immediately following a precipitation event in mid-July contributing roughly 22% of stream nitrate export on this date. Stream samples the day following this and other storms showed this export of event nitrate to be short-lived. Hillslope piezometers showed low nitrate concentrations and high d15N- and d18O-nitrate values (averaging 12 and 18 per mil, repectively) indicating denitrification, which preferentially removes isotopically light N and O in N gases and leaves isotopically heavy nitrate behind. These samples showed a positive relationship between nitrogen and oxygen isotopic composition with a regression line slope of 0.76 (R2 = 0.68), and an isotope enrichment factor -12.7 per mil for denitrification removal of nitrate in these hillslope soils. The isotopic composition of a time series of samples from three riparian piezometers crossing Paradise Brook shows strong connections between the riparian soil water and the stream, as well as a different dominant source of nitrate in each piezometer. Repeated surveys of stream nitrate show modest positive enrichment in N and O isotopes with a slope between 18O and 15N of 0.96, indicating either in- or near-stream denitrification or mixing between stream and hillslope water bearing a stronger denitrification signal. The dual isotope approach provides detailed information on nitrogen cycling dynamics during the summer in a northern hardwood forested catchment. Together, these observations provide strong isotopic evidence for rapid rates of denitrification during summer in the soils of this small forested catchment.

In-Situ Denitrification and N2O Emission from Natural and Semi-natural Land Use Types in two UK Catchments

NASA Astrophysics Data System (ADS)

Sgouridis, F.; Ullah, S.

2014-12-01

Whilst data and understanding of the controls of denitrification process and the subsequent emission of N2O at microbial and plot scale exist, quantification of in situ annual denitrification rates at catchment scales is scarce due to methodological constraints in measuring in situ denitrification in large temporal and spatial scales. In situ denitrification (DNT) was measured monthly (April 2013 - October 2014) in organic (peat bog, heathland, acid grassland), forest (mixed and deciduous), and grassland (improved and semi-improved) land use types in the Ribble-Wyre and Conwy River catchments in the UK. A static chamber technique according to the 15N-Gas Flux method1 was employed for quantifying the fluxes of 15N-N2 and 15N-N2O gases after labelling the soil with 98 at% K15NO3- at tracer level amounts (10% of the ambient nitrate concentration) and sampling the chamber headspace at 0, 1, 2 and 20 hour intervals. The DNT rates ranged between 0 and 2.3 mg N m-2 h-1 and were significantly influenced by land use type (p<0.05). The annual denitrification rate of organic and forest soils (4 kg N ha-1 y-1) was 3 and 6 times less than that of semi-improved (12 kg N ha-1 y-1) and improved (23 kg N ha-1 y-1) grassland soils, respectively. The N2O emission, due to denitrification, followed a similar trend with lower fluxes from organic and higher from improved grassland soils (range: 0 - 0.04 mg N m-2 h-1), whilst the N2O:N2 ratio ranged between 0.2 and 4%. The relative contribution of denitrification to net N2O flux varied temporally and across the different land use types and ranged from 0.2 to 75%. The 15N-Gas Flux method can be successfully applied in a variety of land use types for relatively high temporal and spatial resolution measurement of in situ denitrification and the simultaneous quantification of N2 and N2O fluxes due to denitrification. Therefore the ratio of N2O:N2 and also the source apportionment for N2O can be estimated more accurately. The results suggested a difference in DNT rates between unmanaged/ low nitrate content versus managed/ high nitrate content land use types, which was further supported by the significant positive correlation between DNT and soil nitrate content. 1R. Stevens and R. Laughlin, Nutr. Cycling Agroecosyst., 1998, 52, 131-139.

[Effects of different mulching materials on nitrate metabolism in soil of apple root-zone in summer and autumn.

PubMed

Zhang, Rui Xue; Yang, Hong Qiang; Xu, Ying; Lyu, Ting Wen; Cao, Hui; Ning, Liu Fang; Zhou, Chun Ran; Fan, Wei Guo

2016-08-01

This study explored the effects of mulching straw mat, agricultural carpet, transparent-plastic film and horticultural fabric on nitrification-denitrification, nitrate reductase (NR), nitrite reductase (NiR), ammonium, nitrate and nitrite nitrogen in root-zone soil grown with three-year old apple trees (Malus domestica cv. Starkrimson) during summer and autumn. Results showed that the four treatments decreased nitrification intensity in summer soil, NiR activity in summer-autumn soil and the variation coefficient of nitrification-denitrification intensity and NR in both summer and autumn soil. The treatments increased the denitrification intensity, NR activity, ammonium nitrogen contents in summer-autumn soil and ammonium nitrogen contents in autumn soil. Straw mat treatment increased denitrification intensity and nitrate nitrogen contents in both summer and autumn soil and decreased the activity of NR and NiR in summer soil. The coefficient of variation of nitrification-denitrification intensity and NR activity treated by mulching straw mat was lower than those in the other treatments in both summer and autumn soil. Agricultural carpet increased the NR and NiR activity in summer soil, the nitrate nitrogen contents in summer-autumn soil and the denitrification intensity in autumn soil and decreased denitrification intensity in summer soil. Transparent-plastic film increased the nitrite nitrogen contents in summer soil, the contents of nitrate nitrogen in summer-autumn soil, the nitrification intensity and NiR activity in autumn soil, and decreased nitrate nitrogen contents in summer soil. Horticultural fabric increased denitrification intensity in summer soil, nitrification intensity in summer-autumn and autumn soil and the nitrate nitrogen contents in autumn soil. The four mulching treatments all promoted plant growth. In the four mulching treatments, the new shoot and trunk thickening growth were more under straw mat and horticultural fabric treatments. The four mulching treatments had different effects on nitrate metabolism in summer and autumn soil, but they were able to stabilize the soil nitrate metabolism and transformation. Among the treatments, straw mat had the best stable effect.

Controls on Hyporheic Nitrate Removal: Assessing Transport and Substrate Limitations with 15N Tracer Studies (Invited)

NASA Astrophysics Data System (ADS)

Zarnetske, J. P.; Haggerty, R.; Wondzell, S. M.; Baker, M. A.

2010-12-01

We examined transport time and substrate controls on hyporheic (HZ) nitrification and denitrification in an upland agricultural stream with a series of 15N tracer studies - whole-stream and in situ well-to-well steady-state 15NO3- and conservative tracer (Cl-) addition experiments. For the whole-stream experiment, we measured relevant solute, 15N isotope, and hydraulic transport conditions of the reach and along HZ flowpaths of an instrumented gravel bar. HZ exchange was observed across the entire gravel bar with flowpath lengths up to 4.2m and corresponding median residence times greater than 28.5h. The HZ transitioned from a net nitrification environment at its head (small residence times, <6.9h) to a net denitrification environment at its tail (large residence times, 6.9-28.5h). HZ denitrification was confirmed as 15N2 was produced across the entire gravel bar. Production of 15N2 across all observed flowpaths and residence times indicated that denitrification microsites are present even where net nitrification occurred. At large residence times, the rate of denitrification decreased despite persistent anoxic conditions, indicating substrate (NO3- and carbon) limitations. Consequently, we conducted in situ 15NO3-, conservative tracers (Cl- and Br), and acetate injection experiments to determine how the availability of labile dissolved organic carbon (DOC) as acetate influences microbial denitrification in the HZ, especially along anoxic flowpaths with large residence times. The acetate addition to the HZ stimulated significant increases in 15N2 production by factors of 2.7 to 26.1 in all receiving wells, and significant decreases of NO3- and DOC aromaticity in the wells most hydrologically connected to the injection. Further, 100% of acetate was retained in the HZ, a portion of which is due to biological consumption. These studies demonstrate that: 1. the HZ is an active nitrogen sink in this study system, 2. the distinction between net nitrification and denitrification in the HZ is a function of residence time and exhibits threshold behavior, and 3. microbial denitrification in anaerobic portions of the HZ can be limited by labile DOC supply.

Denitrification in a South Louisiana wetland forest receiving treated sewage effluent

USGS Publications Warehouse

Boustany, R.G.; Crozier, C.R.; Rybczyk, J.M.; Twilley, R.R.

1996-01-01

Although denitrification has the potential to reduce nitrate (NO3a??) pollution of surface waters, the quantification of denitrification rates is complex because it requires differentiation from other mechanisms and is highly variable in both space and time. This study first measured potential denitrification rates at a wetland forest site in south Louisiana before receipt of secondary wastewater effluent, and then, following 30 months of effluent application, landscape gradients of dissolved nitrate (NO3a??) and nitrous oxide (N2O) were measured. A computer model was developed to quantify N transformations. Floodwater NO3a?? and N2O concentrations were higher in the forest receiving effluent than in the adjacent control forest. Denitrification rates of NO3a?? -amended soil cores ranged from 0.03a??0.45 g N ma??2 da??1 with an overall mean of 0.10 g N ma??2 da??1. Effluent N is being applied at a rate of approximately 0.034 g N ma??2 da??1, with approximately 95% disappearing along a 1 km transect. In the treatment forest, floodwater NO3a?? concentrations decreased from 1000 M at the inflow point to 50 M along the 1 km transect. Nitrous oxide concentrations increased from 0.25 M to 1.2 M within the first 100 m, but decreased to 0.1 M over the next 900 m. The initial increase in N2O was presumably a result ofin situ denitrification. Model analyses indicated that denitrification was directly associated with nitrification and was limited by the availability of NO3a?? produced by nitrification. Due to different redox potential optima, coupling of nitrification and denitrification was a function of a balance of environmental conditions that was moderately favorable to both processes. N removal efficiency was largely dependent on the proportion of effluent NH4+ to NO3a?? . When NH4+ /NO3a?? was 1, average N removal efficiency ranged from 95a??100%, but ratios that were >1 reduced average efficiencies to as low as 57%. Actual effluent NH4+ /NO3a?? loading ratios at this site are approximately 0.2 and are consistently <1.

Simultaneous measurement at multiple depths of in situ rates of denitrification in the bed of a groundwater-fed river

NASA Astrophysics Data System (ADS)

Lansdown, Katrina; Trimmer, Mark; Heppell, Kate

2010-05-01

Typically characterised by steep chemical gradients and variable redox conditions, the hyporheic zone is considered a 'hotpot' or site of enhanced biogeochemical activity in the aquatic environment. As such the importance of the hyporheic zone for the attenuation of nutrients such as nitrate in a fluvial network has long been recognised. Controls on nitrogen transformations, however, especially at depths greater than 10cm below the sediment-water interface, remain comparatively less understood. Most work aimed at quantifying denitrification in the hyporheic zone has involved laboratory incubation of recovered sediments which is likely to affect the estimate of the true in situ rate. Results of such studies are usually cited as 'potential' rates of denitrification and have undoubtedly improved the understanding of nitrogen cycling in the aquatic environment. There is, however, a need for in situ measurement to improve our knowledge of nitrogen cycling in the river bed. Here, rates of denitrification in the hyporheic zone have been measured at multiple depths, simultaneously using 'push-pull' methodology (e.g. Snodgrass and Kitanidis 1998). The 'push-pull' technique involves injection of a solution containing reactant(s) (e.g. nitrate) and a conservative tracer (e.g. chloride) into the sediment and extraction of pore water samples over time. Recovered samples are screened for the removal of reactant(s) and/or the accumulation of products(s). Temporal changes in the conservative tracer are used to correct the concentration of the reactant(s) and product(s) for dispersion and advection. The disadvantage of the 'traditional' 'push-pull' methodology is that rates of nitrate removal are measured rather than rates of denitrification. In this research, comparison of measured and 'corrected' nitrate concentrations allowed the rate of nitrate removal (or production) to be quantified. In order to determine in situ rates of denitrification we used 15N-enriched nitrate as the reactant in the 'push-pull' experiments and measured the accumulation of 29N2 and 30N2 over time. Rates of denitrification were then calculated using the isotope pairing technique (as per Nielsen 1992; Sanders and Trimmer 2006). Measurements have been made at up to 40cm depth in the river bed using a miniprobe system developed from the design of Sanders and Trimmer (2006) in order to validate the experimental approach. Previous work conducted at the study site (R. Leith, Cumbria, UK) suggested than ambient conditions would not be ideal for in situ measurement of denitrification rates using 'push-pull' methodology. Slow rates of denitrification were measured during laboratory incubations of the sandy sediment (M. Trimmer, unpublished data), and the velocity of flow in the hyporheic zone would limit the duration of the in situ measurement (Käser et al. 2009). Despite difficulties posed by the site, we have measured in situ rates of denitrification at multiple depths in the hyporheic zone simultaneously. We also report measurement of in situ rates of denitrification below the zone of surface water - ground water mixing. In future we will use the experimental technique described in this paper to quantify (i) variation in N transformation rates with depth; and (ii) spatial variation in rates of nitrate consumption/production within the river bed. Käser, DH, Binley, A, Heathwaite, AL and Krause, S (2009) Spatio-temporal variations of hyporheic flow in a riffle-pool sequence. Hydrological Processes 23: 2138 - 2149. Nielsen, LP (1992) Denitrification in sediment determined from nitrogen isotope pairing. FEMS Microbiology Ecology 86: 357 - 362. Sanders, IA and Trimmer, M (2006) In situ application of the 15NO3- isotope pairing technique to measure denitrification in sediments at the surface water-groundwater interface. Limnology and oceanography: Methods 4: 142 - 152. Snodgrass, MF and Kitanidis, PK (1998) A method to infer in situ reaction rates from push-pull experiments. Ground Water 36(4): 645 - 650.

Wetland Characteristics and Denitrification

EPA Science Inventory

This presentation serves as an initial summary of our wetland field work's watershed characteristics hydrologic characteristics, water quality measurements, and denitrification assays. We present our measurement results in the context of wetland type (Estuarine, Freshwater Mars...

Biological denitrification of high concentration nitrate waste

DOEpatents

Francis, Chester W.; Brinkley, Frank S.

1977-01-01

Biological denitrification of nitrate solutions at concentrations of greater than one kilogram nitrate per cubic meter is accomplished anaerobically in an upflow column having as a packing material a support for denitrifying bacteria.

Denitrification Associated with Periphyton Communities

PubMed Central

Triska, Frank J.; Oremland, Ronald S.

1981-01-01

Scrapings of decomposing Cladophora sp. mats (periphyton) covering stream bed rocks produced N2O when incubated under N2 plus 15% C2H2. Denitrification (N2O formation) was enhanced by NO3− and was inhibited by autoclaving, Hg2+, and O2. No N2O was formed in the absence of C2H2 (air or N2 atmosphere). Chloramphenicol did not block N2O formation, indicating that the enzymes were constitutive. In field experiments, incubation of periphyton scrapings in the light inhibited denitrification because of algal photosynthetic O2 production. The diurnal periphyton-associated denitrification rate was estimated to be 45.8 μmol of N2O·m−2·day−1, as determined by averaging light, aerobic plus dark, and anaerobic rates over a 24-h period. PMID:16345874

Kinetic analysis of simultaneous denitrification and biomineralization of novel Acinetobacter sp. CN86.

PubMed

Su, Jun-Feng; Shi, Jing-Xin; Huang, Ting-Lin; Ma, Fang

2016-08-15

A novel aerobic denitrification and biomineralization strain CN86 was isolated from the Qu Jiang artificial lake. Based on phylogenetic characteristics, the isolated strain was identified as Acinetobacter species. Strain CN86 was confirmed to have the ability to perform simultaneous denitrification and biomineralization. Exponential decay equation was used for the matching of kinetic processes on denitrification and biomineralization. A highest nitrate removal rate was achieved at the pH7.0, organic concentration of 1.5g/L and temperature of 30°C. An optimal hardness removal rate was obtained at the pH9.0, organic concentration of 2.0g/L and temperature of 30°C. Strain CN86 is a suitable candidate for the simultaneous removal of nitrate and hardness in groundwater treatment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Organic carbon, and not copper, controls denitrification in oxygen minimum zones of the ocean

NASA Astrophysics Data System (ADS)

Ward, Bess B.; Tuit, Caroline B.; Jayakumar, Amal; Rich, Jeremy J.; Moffett, James; Naqvi, S. Wajih A.

2008-12-01

Incubation experiments under trace metal clean conditions and ambient oxygen concentrations were used to investigate the response of microbial assemblages in oxygen minimum zones (OMZs) to additions of organic carbon and copper, two factors that might be expected to limit denitrification in the ocean. In the OMZs of the Eastern Tropical North and South Pacific, denitrification appeared to be limited by organic carbon; exponential cell growth and rapid nitrate and nitrite depletion occurred upon the addition of small amounts of carbon, but copper had no effect. In the OMZ of the Arabian Sea, neither carbon nor copper appeared to be limiting. We hypothesize that denitrification is variable in time and space in the OMZs in ways that may be predictable based on links to the episodic supply of organic substrates from overlying productive surface waters.

Effect of dissolved oxygen tension and agitation rates on sulfur-utilizing autotrophic denitrification: batch tests.

PubMed

Qambrani, Naveed Ahmed; Oh, Sang-Eun

2013-01-01

The effect of dissolved oxygen (DO) and agitation rate in open and closed reactors was examined for sulfur-utilizing autotrophic denitrification. The reaction rate constants were determined based on a half-order kinetic model. Declining denitrification rate constants obtained for open reactors those of 8.46, 8.03, and 2.18 for 50 mg NO(3) (-)-N/L, while 11.12, 9.14, and 0.12 mg(1/2)/L(1/2) h were for 100 mg NO(3) (-)-N/L at agitation speeds of 0, 100, and 200 rpm. In closed reactors, the ever-increasing denitrification rates were 10.13, 22.56, and 37.03, whereas for the same nitrate concentrations and speeds the rates were 13.17, 15.63, and 26.67 mg(1/2)/L(1/2) h. The rate constants correlated well (r ( 2 ) = 0.89-0.99) with a half-order kinetic model. In open reactors, high SO(4) (2-)/N ratios (8.02-75.10) while in closed reactors comparatively low SO(4) (2-)/N ratios (6.10-13.39) were obtained. Sulfur oxidation occurred continuously in the presence of DO, resulting in mixed cultures acclimated to sulfur and nitrate. SO(4) (2-) was produced as an end product, which reduced alkalinity and lowered pH over time. Furthermore, DO inhibited sulfur denitrification in open reactors, while agitation in closed reactors increased the rate of denitrification.

Denitrification and anammox in tropical aquaculture settlement ponds: an isotope tracer approach for evaluating N2 production.

PubMed

Castine, Sarah A; Erler, Dirk V; Trott, Lindsay A; Paul, Nicholas A; de Nys, Rocky; Eyre, Bradley D

2012-01-01

Settlement ponds are used to treat aquaculture discharge water by removing nutrients through physical (settling) and biological (microbial transformation) processes. Nutrient removal through settling has been quantified, however, the occurrence of, and potential for microbial nitrogen (N) removal is largely unknown in these systems. Therefore, isotope tracer techniques were used to measure potential rates of denitrification and anaerobic ammonium oxidation (anammox) in the sediment of settlement ponds in tropical aquaculture systems. Dinitrogen gas (N(2)) was produced in all ponds, although potential rates were low (0-7.07 nmol N cm(-3) h(-1)) relative to other aquatic systems. Denitrification was the main driver of N(2) production, with anammox only detected in two of the four ponds. No correlations were detected between the measured sediment variables (total organic carbon, total nitrogen, iron, manganese, sulphur and phosphorous) and denitrification or anammox. Furthermore, denitrification was not carbon limited as the addition of particulate organic matter (paired t-Test; P = 0.350, n = 3) or methanol (paired t-Test; P = 0.744, n = 3) did not stimulate production of N(2). A simple mass balance model showed that only 2.5% of added fixed N was removed in the studied settlement ponds through the denitrification and anammox processes. It is recommended that settlement ponds be used in conjunction with additional technologies (i.e. constructed wetlands or biological reactors) to enhance N(2) production and N removal from aquaculture wastewater.

Denitrification and Anammox in Tropical Aquaculture Settlement Ponds: An Isotope Tracer Approach for Evaluating N2 Production

PubMed Central

Castine, Sarah A.; Erler, Dirk V.; Trott, Lindsay A.; Paul, Nicholas A.; de Nys, Rocky; Eyre, Bradley D.

2012-01-01

Settlement ponds are used to treat aquaculture discharge water by removing nutrients through physical (settling) and biological (microbial transformation) processes. Nutrient removal through settling has been quantified, however, the occurrence of, and potential for microbial nitrogen (N) removal is largely unknown in these systems. Therefore, isotope tracer techniques were used to measure potential rates of denitrification and anaerobic ammonium oxidation (anammox) in the sediment of settlement ponds in tropical aquaculture systems. Dinitrogen gas (N2) was produced in all ponds, although potential rates were low (0–7.07 nmol N cm−3 h−1) relative to other aquatic systems. Denitrification was the main driver of N2 production, with anammox only detected in two of the four ponds. No correlations were detected between the measured sediment variables (total organic carbon, total nitrogen, iron, manganese, sulphur and phosphorous) and denitrification or anammox. Furthermore, denitrification was not carbon limited as the addition of particulate organic matter (paired t-Test; P = 0.350, n = 3) or methanol (paired t-Test; P = 0.744, n = 3) did not stimulate production of N2. A simple mass balance model showed that only 2.5% of added fixed N was removed in the studied settlement ponds through the denitrification and anammox processes. It is recommended that settlement ponds be used in conjunction with additional technologies (i.e. constructed wetlands or biological reactors) to enhance N2 production and N removal from aquaculture wastewater. PMID:22962581

Nitrogen removal from the saline sludge liquor by electrochemical denitrification.

PubMed

Xie, Z M; Li, X Y; Chan, K Y

2006-01-01

Sludge liquor from the sludge dewatering process has a high ammonia content. In the present study, a lab-scale electrochemical (EC) system with a pair of Ti electrode plates was used for treating the sludge centrate liquor of digested wastewater sludge with a NH4(+) - N content of around 500 mg/L. The sludge liquor had a high salinity due to seawater being used for toilet flushing in Hong Kong. The results show that the EC process is highly effective for denitrification of the saline sludge liquor. Complete nitrogen removal could be achieved within 1 hr or so. The rate of EC denitrification increased with the current intensity applied. The best current efficiency for nitrogen removal was obtained for a gap distance between the electrodes at 8 mm. Electro-chlorination was considered to be the major mechanism of EC denitrification. The formation of chlorination by-products (CBPs) appeared to be minimal with the total trihalomethanes (THM) detected at a level of 300 microg/L or lower. The power consumption for EC denitrification was around 23 kWh/kg N. Additional electro-flocculation with a pair of iron needle electrodes could enhance the flocculation and subsequent sedimentation of colloidal organics in the sludge liquor, increasing the organic removal from less than 30% to more than 70%. Therefore, the EC process including both electro-denitrification and electro-flocculation can be developed as the most cost-effective method for treatment of the saline sludge liquor.

Denitrification and nitrification in the Arctic stratosphere during the winter of 1996-1997

NASA Astrophysics Data System (ADS)

Kondo, Y.; Irie, H.; Koike, M.; Bodeker, G. E.

2000-02-01

The concentrations of HNO3, N2O, ozone, and aerosol in the lower stratosphere inside the Arctic vortex were observed by the Improved Limb Atmospheric Spectrometer (ILAS) in the winter of 1996-1997. These data demonstrate that irreversible loss of reactive nitrogen by sedimentation of HNO3 containing particles (denitrification) at 18-23 km occurred in mid-late February soon after the Arctic vortex cooled below ice saturation temperature (TICE). Denitrification exceeding 40% was observed only in air masses which experienced temperature below TICE. It occurred within 2 days in some of these air masses. Increases in HNO3 by evaporation of the particles (nitrification) at 13-15 km occurred 0-3 days after denitrification was observed, indicating particle radii of 5-10 µm or larger. It is likely that these particles were composed of nitric acid trihydrate (NAT) or NAT-coated ice particles, given that the temperatures below 16 km were higher than TICE. Continued exposure of air masses below NAT saturation temperature for 1-4 days did not lead to any significant denitrification as long as the temperature did not fall below TICE, indicating that possible nucleation of NAT at these temperatures within 4 days did not play a significant role in causing denitrification. There was little change in the average HNO3 column from February 11 to 28 since HNO3 decreases at 18-23 km were almost completely offset by increases at 12-17 km.

Mechanism of biological denitrification inhibition: procyanidins induce an allosteric transition of the membrane-bound nitrate reductase through membrane alteration.

PubMed

Bardon, Clément; Poly, Franck; Piola, Florence; Pancton, Muriel; Comte, Gilles; Meiffren, Guillaume; Haichar, Feth el Zahar

2016-05-01

Recently, it has been shown that procyanidins from Fallopia spp. inhibit bacterial denitrification, a phenomenon called biological denitrification inhibition (BDI). However, the mechanisms involved in such a process remain unknown. Here, we investigate the mechanisms of BDI involving procyanidins, using the model strain Pseudomonas brassicacearum NFM 421. The aerobic and anaerobic (denitrification) respiration, cell permeability and cell viability of P. brassicacearum were determined as a function of procyanidin concentration. The effect of procyanidins on the bacterial membrane was observed using transmission electronic microscopy. Bacterial growth, denitrification, NO3- and NO2-reductase activity, and the expression of subunits of NO3- (encoded by the gene narG) and NO2-reductase (encoded by the gene nirS) under NO3 or NO2 were measured with and without procyanidins. Procyanidins inhibited the denitrification process without affecting aerobic respiration at low concentrations. Procyanidins also disturbed cell membranes without affecting cell viability. They specifically inhibited NO3- but not NO2-reductase.Pseudomonas brassicacearum responded to procyanidins by over-expression of the membrane-bound NO3-reductase subunit (encoded by the gene narG). Our results suggest that procyanidins can specifically inhibit membrane-bound NO3-reductase inducing enzymatic conformational changes through membrane disturbance and that P. brassicacearum responds by over-expressing membrane-bound NO3-reductase. Our results lead the way to a better understanding of BDI. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Inhibition of existing denitrification enzyme activity by chloramphenicol

USGS Publications Warehouse

Brooks, M.H.; Smith, R.L.; Macalady, D.L.

1992-01-01

Chloramphenicol completely inhibited the activity of existing denitrification enzymes in acetylene-block incubations with (i) sediments from a nitrate-contaminated aquifer and (ii) a continuous culture of denitrifying groundwater bacteria. Control flasks with no antibiotic produced significant amounts of nitrous oxide in the same time period. Amendment with chloramphenicol after nitrous oxide production had begun resulted in a significant decrease in the rate of nitrous oxide production. Chloramphenicol also decreased (>50%) the activity of existing denitrification enzymes in pure cultures of Pseudomonas denitrificans that were harvested during log- phase growth and maintained for 2 weeks in a starvation medium lacking electron donor. Short-term time courses of nitrate consumption and nitrous oxide production in the presence of acetylene with P. denitrificans undergoing carbon starvation were performed under optimal conditions designed to mimic denitrification enzyme activity assays used with soils. Time courses were linear for both chloramphenicol and control flasks, and rate estimates for the two treatments were significantly different at the 95% confidence level. Complete or partial inhibition of existing enzyme activity is not consistent with the current understanding of the mode of action of chloramphenicol or current practice, in which the compound is frequently employed to inhibit de novo protein synthesis during the course of microbial activity assays. The results of this study demonstrate that chloramphenicol amendment can inhibit the activity of existing denitrification enzymes and suggest that caution is needed in the design and interpretation of denitrification activity assays in which chloramphenicol is used to prevent new protein synthesis.

Denitrification rates in marsh soils and hydrologic and water quality data for Northeast Creek and Bass Harbor Marsh watersheds, Mount Desert Island, Maine

USGS Publications Warehouse

Huntington, Thomas G.; Culbertson, Charles W.; Duff, John H.

2011-01-01

Nutrient enrichment from atmospheric deposition, agricultural activities, wildlife, and domestic sources is a concern at Acadia National Park because of the potential problem of water-quality degradation and eutrophication in estuaries. Water-quality degradation has been observed at the park's Bass Harbor Marsh estuary but minimal degradation is observed in Northeast Creek estuary. Previous studies at Acadia National Park have estimated nutrient inputs to estuaries from atmospheric deposition and surface-water runoff, and have identified shallow groundwater as an additional potential nutrient source. Previous studies at Acadia National Park have assumed that a certain fraction of the nitrogen input was removed through microbial denitrification, but rates of denitrification (natural or maximum potential) in marsh soils have not been determined. The U.S. Geological Survey, in cooperation with Acadia National Park, measured in situ denitrification rates in marsh soils in Northeast Creek and Bass Harbor Marsh watersheds during the summer seasons of 2008 and 2009. Denitrification was measured under ambient conditions and following inorganic nitrogen and glucose additions. Laboratory incubations of marsh soils with and without acetylene were conducted to determine average ratios of nitrous oxide (N2O) to nitrogen (N2) produced during denitrification. Surface water and groundwater samples were analyzed for nutrients, specific conductance, temperature, and dissolved oxygen. Water level was recorded continuously during the growing season in Fresh Meadow Marsh in the Northeast Creek Watershed.

Source portioning of N_{2}O emissions after long term elevation of soil temperature in a permanent grassland soil

NASA Astrophysics Data System (ADS)

Jansen-Willems, Anne; Lanigan, Gary; Clough, Timothy; Andresen, Louise; Müller, Christoph

2016-04-01

Several methods, such as source portioning, have been used to quantify the contributions of individual N pools to N2O emissions. These methods however, assume the absence of hybrid reactions such as co-denitrification, which were previously identified as important. A straight forward method portioning N2O fluxes into four different production processes, including a hybrid reaction, was therefore developed. This method portioned the N2O fluxes in nitrification, denitrification, oxidation of organic matter and co-denitrification, using data on 45R and 46R of the N2O flux and the 15N content of the NO3- and NH4+ in the soil. This newly developed method was used to analyse the N2O emissions from incubated soil, which was previously subjected to 6 years of elevated soil temperature of +0, +1, +2 or +3 ° C. N2O emissions were measured and analysed at four time points in the six days following, NO315NH4 Gly or 15NO3NH4 Gly, label addition. The oxidation of organic N was found to be the main source of N2O fluxes at all sampling dates, comprising between 63 and 85% of the total N2O flux. The percentage contribution made by organic N to N2O fluxes increased over the sampling period, rising from a minimum of 40% in the control treatment, to virtually 100% across all treatments by Day 6. Compared to the control treatment, denitrification contributed less to N2O from soil subjected to +2 and +3 ° C warming (p <0.0001 and p=0.002, respectively). Co-denitrification only contributed to the N2O flux during the first day after substrate addition. The highest amount of N2O produced via co-denitrification was found under the control treatment. From soil subjected to +2 and +3 ° C treatments, the contribution of co-denitrification was minor. However, these differences in co-denitrification were not significant. This research showed the importance of the oxidation of organic N in N2O emissions. It should therefore not be omitted as a potential source in source portioning. Emissions of N2O in the first six days after fertilisation decreased for soils previously subjected to higher temperatures as a consequence of a reduction in the rates of denitrification and the oxidation of organic N.

Fine-scale in situ measurement of riverbed nitrate production and consumption in an armored permeable riverbed.

PubMed

Lansdown, Katrina; Heppell, Catherine M; Dossena, Matteo; Ullah, Sami; Heathwaite, A Louise; Binley, Andrew; Zhang, Hao; Trimmer, Mark

2014-04-15

Alteration of the global nitrogen cycle by man has increased nitrogen loading in waterways considerably, often with harmful consequences for aquatic ecosystems. Dynamic redox conditions within riverbeds support a variety of nitrogen transformations, some of which can attenuate this burden. In reality, however, assessing the importance of processes besides perhaps denitrification is difficult, due to a sparseness of data, especially in situ, where sediment structure and hydrologic pathways are intact. Here we show in situ within a permeable riverbed, through injections of (15)N-labeled substrates, that nitrate can be either consumed through denitrification or produced through nitrification, at a previously unresolved fine (centimeter) scale. Nitrification and denitrification occupy different niches in the riverbed, with denitrification occurring across a broad chemical gradient while nitrification is restricted to more oxic sediments. The narrow niche width for nitrification is in effect a break point, with the switch from activity "on" to activity "off" regulated by interactions between subsurface chemistry and hydrology. Although maxima for denitrification and nitrification occur at opposing ends of a chemical gradient, high potentials for both nitrate production and consumption can overlap when groundwater upwelling is strong.

Experimental study on removal of NO using adsorption of activated carbon/reduction decomposition of microwave heating.

PubMed

Shuang-Chen, Ma; Yao, Juan-Juan; Gao, Li

2012-01-01

Experimental studies were carried out on flue gas denitrification using activated carbon irradiated by microwave. The effects of microwave irradiation power (reaction temperature), the flow rate of flue gas, the concentration of NO and the flue gas coexisting compositions on the adsorption property of activated carbon and denitrification efficiency were investigated. The results show that: the higher of microwave power, the higher of denitrification efficiency; denitrification efficiency would be greater than 99% and adsorption capacity of NO is relatively stable after seven times regeneration if the microwave power is more than 420 W; adsorption capacity of NO in activated carbon bed is 33.24 mg/g when the space velocity reaches 980 per hour; adsorption capacity declines with increasing of the flow rate of flue gas; the change in denitrification efficiency is not obvious with increasing oxygen content in the flue gas; and the maximum adsorption capacity of NO was observed when moisture in flue gas was about 5.88%. However, the removal efficiency of NO reduces with increasing moisture, and adsorption capacity and removal efficiency of NO reduce with increasing of SO2 concentration in the flue gas.

Microbial denitrification dominates nitrate losses from forest ecosystems

PubMed Central

Fang, Yunting; Koba, Keisuke; Makabe, Akiko; Takahashi, Chieko; Zhu, Weixing; Hayashi, Takahiro; Hokari, Azusa A.; Urakawa, Rieko; Bai, Edith; Houlton, Benjamin Z.; Xi, Dan; Zhang, Shasha; Matsushita, Kayo; Tu, Ying; Liu, Dongwei; Zhu, Feifei; Wang, Zhenyu; Zhou, Guoyi; Chen, Dexiang; Makita, Tomoko; Toda, Hiroto; Liu, Xueyan; Chen, Quansheng; Zhang, Deqiang; Li, Yide; Yoh, Muneoki

2015-01-01

Denitrification removes fixed nitrogen (N) from the biosphere, thereby restricting the availability of this key limiting nutrient for terrestrial plant productivity. This microbially driven process has been exceedingly difficult to measure, however, given the large background of nitrogen gas (N2) in the atmosphere and vexing scaling issues associated with heterogeneous soil systems. Here, we use natural abundance of N and oxygen isotopes in nitrate (NO3−) to examine dentrification rates across six forest sites in southern China and central Japan, which span temperate to tropical climates, as well as various stand ages and N deposition regimes. Our multiple stable isotope approach across soil to watershed scales shows that traditional techniques underestimate terrestrial denitrification fluxes by up to 98%, with annual losses of 5.6–30.1 kg of N per hectare via this gaseous pathway. These N export fluxes are up to sixfold higher than NO3− leaching, pointing to widespread dominance of denitrification in removing NO3− from forest ecosystems across a range of conditions. Further, we report that the loss of NO3− to denitrification decreased in comparison to leaching pathways in sites with the highest rates of anthropogenic N deposition. PMID:25605898

Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions

PubMed Central

Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu

2014-01-01

Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD. PMID:24245852

Stratospheric Polar Freezing Belt Causes Denitrification

NASA Technical Reports Server (NTRS)

Tabazadeh, A.; Jensen, E. J.; Toon, O. B.; Drdla, K.; Schoeberl, M. R.; Gore, Warren J. (Technical Monitor)

2001-01-01

Trajectory cloud model calculations are presented to show that homogeneous freezing of nitric acid hydrates can produce a polar freezing belt in both hemispheres that can cause denitrification. While hydrate cloud microphysical properties are similar over both poles, the shorter persistence of clouds in the Arctic prevents the depth of the denitrified layers from growing beyond a few kilometers. The 1999-2000 Arctic winter is unique in showing a distinct denitrification profile with a depth of approx. 4.5 km that is nearly half as deep as that computed for a typical Antarctic winter.

Suppression of N2O and NO from denitrification by biochar: the role of pH

NASA Astrophysics Data System (ADS)

Obia, Alfred; Cornelissen, Gerard; Mulder, Jan; Dörsch, Peter

2015-04-01

Denitrification reduces NO3- to N2 and returns excess nitrogen to the atmosphere. NO and N2O are gaseous intermediates of denitrification which, once escaped to the atmosphere, have adverse effects on chemistry and radiative forcing in the atmosphere. We studied the effect of biochar on denitrification and its gaseous intermediates in two acidic soils and tried to distinguish between the alkalizing effect of biochars on soil pH, and other, unknown effects of biochar on denitrification. Anoxic soil slurries were incubated with untreated biochars or biochars from which part of the alkalinity had been removed by water- and acid leaching. Soils amended with NaOH and uncharred cacao shell were used as controls. Biochar addition stimulated overall denitrification depending on biochar and soil type. This stimulation was not strictly coupled to pH increase, suggesting that biochar fueled respiration processes by contributing microbially available C. High resolution gas kinetics of NO, N2O and N2 showed that biochar amended soils induced denitrification enzymes earlier and with higher activity, resulting in less NO and N2O accumulation relative to N2 production. The extent to which biochar suppressed NO and N2O was dose-dependent and clearly related to the effective pH increase during incubation. Acid leaching of BC reduced or eliminated its ability to suppress N2O and NO net production. Comparison of BC with NaOH-amended soils showed that the reduction of N2O and NO net production was mainly an effect of increase in soil pH. Even though other factors supporting N2O reductase activity could not be excluded, our results indicate that soil pH increase might be an important driver behind the often-reported suppression of N2O emissions after biochar addition.

Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability

PubMed Central

Zhu, Xia; Burger, Martin; Doane, Timothy A.; Horwath, William R.

2013-01-01

The continuous increase of nitrous oxide (N2O) abundance in the atmosphere is a global concern. Multiple pathways of N2O production occur in soil, but their significance and dependence on oxygen (O2) availability and nitrogen (N) fertilizer source are poorly understood. We examined N2O and nitric oxide (NO) production under 21%, 3%, 1%, 0.5%, and 0% (vol/vol) O2 concentrations following urea or ammonium sulfate [(NH4)2SO4] additions in loam, clay loam, and sandy loam soils that also contained ample nitrate. The contribution of the ammonia (NH3) oxidation pathways (nitrifier nitrification, nitrifier denitrification, and nitrification-coupled denitrification) and heterotrophic denitrification (HD) to N2O production was determined in 36-h incubations in microcosms by 15N-18O isotope and NH3 oxidation inhibition (by 0.01% acetylene) methods. Nitrous oxide and NO production via NH3 oxidation pathways increased as O2 concentrations decreased from 21% to 0.5%. At low (0.5% and 3%) O2 concentrations, nitrifier denitrification contributed between 34% and 66%, and HD between 34% and 50% of total N2O production. Heterotrophic denitrification was responsible for all N2O production at 0% O2. Nitrifier denitrification was the main source of N2O production from ammonical fertilizer under low O2 concentrations with urea producing more N2O than (NH4)2SO4 additions. These findings challenge established thought attributing N2O emissions from soils with high water content to HD due to presumably low O2 availability. Our results imply that management practices that increase soil aeration, e.g., reducing compaction and enhancing soil structure, together with careful selection of fertilizer sources and/or nitrification inhibitors, could decrease N2O production in agricultural soils. PMID:23576736

Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability.

PubMed

Zhu, Xia; Burger, Martin; Doane, Timothy A; Horwath, William R

2013-04-16

The continuous increase of nitrous oxide (N2O) abundance in the atmosphere is a global concern. Multiple pathways of N2O production occur in soil, but their significance and dependence on oxygen (O2) availability and nitrogen (N) fertilizer source are poorly understood. We examined N2O and nitric oxide (NO) production under 21%, 3%, 1%, 0.5%, and 0% (vol/vol) O2 concentrations following urea or ammonium sulfate [(NH4)2SO4] additions in loam, clay loam, and sandy loam soils that also contained ample nitrate. The contribution of the ammonia (NH3) oxidation pathways (nitrifier nitrification, nitrifier denitrification, and nitrification-coupled denitrification) and heterotrophic denitrification (HD) to N2O production was determined in 36-h incubations in microcosms by (15)N-(18)O isotope and NH3 oxidation inhibition (by 0.01% acetylene) methods. Nitrous oxide and NO production via NH3 oxidation pathways increased as O2 concentrations decreased from 21% to 0.5%. At low (0.5% and 3%) O2 concentrations, nitrifier denitrification contributed between 34% and 66%, and HD between 34% and 50% of total N2O production. Heterotrophic denitrification was responsible for all N2O production at 0% O2. Nitrifier denitrification was the main source of N2O production from ammonical fertilizer under low O2 concentrations with urea producing more N2O than (NH4)2SO4 additions. These findings challenge established thought attributing N2O emissions from soils with high water content to HD due to presumably low O2 availability. Our results imply that management practices that increase soil aeration, e.g., reducing compaction and enhancing soil structure, together with careful selection of fertilizer sources and/or nitrification inhibitors, could decrease N2O production in agricultural soils.

Impact of chloride on denitrification potential in roadside wetlands.

PubMed

Lancaster, Nakita A; Bushey, Joseph T; Tobias, Craig R; Song, Bongkeun; Vadas, Timothy M

2016-05-01

Developed landscapes are exposed to changes in hydrology and water chemistry that limit their ability to mitigate detrimental impacts to coastal water bodies, particularly those that result from stormwater runoff. The elevated level of impervious cover increases not only runoff but also contaminant loading of nutrients, metals, and road salt used for deicing to water bodies. Here we investigate the impact that road salt has on denitrification in roadside environments. Sediments were collected from a series of forested and roadside wetlands and acclimated with a range of Cl(-) concentrations from 0 to 5000 mg L(-1) for 96 h. Denitrification rates were measured by the isotope pairing technique using (15)N-NO3(-), while denitrifying community structures were compared using terminal restriction fragment length polymorphism (T-RFLP) of nitrous oxide reductase genes (nosZ). Chloride significantly (p < 0.05) inhibited denitrification in forested wetlands at a Cl(-) dosage of 2500 or 5000 mg L(-1), but the decrease in denitrification rates was less and not significant for the roadside wetlands historically exposed to elevated concentrations of Cl(-). The difference could not be attributed to other significant changes in conditions, such as DOC concentrations, N species concentrations, or pH levels. Denitrifying communities, as measured by T-RFs of the nosZ gene, in the roadside wetlands with elevated concentration of Cl(-) were distinctly different and more diverse compared to forested wetlands, and also different in roadside wetlands after 96 h exposures to Cl(-). The shifts in denitrifying communities seem to minimize the decrease in denitrification rates in the wetlands previously exposed to Cl. As development results in more Cl(-) use and exposure to a broad range of natural or manmade wetland structures, an understanding of the seasonal effect of Cl on denitrification processes in these systems would aid in design or mitigation of the effects on N removal rates. Copyright © 2016 Elsevier Ltd. All rights reserved.

Enhanced nitrogen loss from rivers through coupled nitrification-denitrification caused by suspended sediment.

PubMed

Xia, Xinghui; Liu, Ting; Yang, Zhifeng; Michalski, Greg; Liu, Shaoda; Jia, Zhimei; Zhang, Sibo

2017-02-01

Present-day estimations of global nitrogen loss (N-loss) are underestimated. Commonly, N-loss from rivers is thought to be caused by denitrification only in bed-sediments. However, coupled nitrification-denitrification occurring in overlying water with suspended sediments (SPS) where oxic and anoxic/low oxygen zones may coexist is ignored for N-loss in rivers. Here the Yellow and Yangtze Rivers were taken as examples to investigate the effect of SPS, which exists in many rivers of the world, on N loss through coupled nitrification-denitrification with nitrogen stable ( 15 N) isotopic tracer simulation experiments and in-situ investigation. The results showed even when SPS was surrounded by oxic waters, there were redox conditions that transitioned from an oxic surface layer to anoxic layer near the particle center, enabling coupled nitrification-denitrification to occur around SPS. The production rate of 15 N 2 from 15 NH 4 + -N (R 15N2-production ) increased with increasing SPS concentration ([SPS]) as a power function (R 15N2-production =a·[SPS] b ) for both the SPS-water and bed sediment-SPS-water systems. The power-functional increase of nitrifying and denitrifying bacteria population with [SPS] accounted for the enhanced coupled nitrification-denitrification rate in overlying water. SPS also accelerated denitrification in bed-sediment due to increased NO 3 - concentration caused by SPS-mediated nitrification. For these two rivers, 1gL -1 SPS will lead to N-loss enhancement by approximately 25-120%, and the enhancement increased with organic carbon content of SPS. Thus, we conclude that SPS in overlying water is a hot spot for nitrogen loss in river systems and current estimates of in-stream N-loss are underestimated without consideration of SPS; this may partially compensate for the current imbalance of global nitrogen inputs and sinks. Copyright © 2016 Elsevier B.V. All rights reserved.

Fungal oxygen exchange between denitrification intermediates and water.

PubMed

Rohe, Lena; Anderson, Traute-Heidi; Braker, Gesche; Flessa, Heinz; Giesemann, Anette; Wrage-Mönnig, Nicole; Well, Reinhard

2014-02-28

Fungi can contribute greatly to N2O production from denitrification. Therefore, it is important to quantify the isotopic signature of fungal N2O. The isotopic composition of N2O can be used to identify and analyze the processes of N2O production and N2O reduction. In contrast to bacteria, information about the oxygen exchange between denitrification intermediates and water during fungal denitrification is lacking, impeding the explanatory power of stable isotope methods. Six fungal species were anaerobically incubated with the electron acceptors nitrate or nitrite and (18)O-labeled water to determine the oxygen exchange between denitrification intermediates and water. After seven days of incubation, gas samples were analyzed for N2O isotopologues by isotope ratio mass spectrometry. All the fungal species produced N2O. N2O production was greater when nitrite was the sole electron acceptor (129 to 6558 nmol N2O g dw(-1)  h(-1)) than when nitrate was the electron acceptor (6 to 47 nmol N2O g dw(-1)  h(-1)). Oxygen exchange was complete with nitrate as electron acceptor in one of five fungi and with nitrite in two of six fungi. Oxygen exchange of the other fungi varied (41 to 89% with nitrite and 11 to 61% with nitrate). This is the first report on oxygen exchange with water during fungal denitrification. The exchange appears to be within the range previously reported for bacterial denitrification. This adds to the difficulty of differentiating N2O producing processes based on the origin of N2O-O. However, the large oxygen exchange repeatedly observed for bacteria and now also fungi could lead to less variability in the δ(18)O values of N2O from soils, which could facilitate the assessment of the extent of N2O reduction. Copyright © 2013 John Wiley & Sons, Ltd.

The enzymes associated with denitrification

NASA Technical Reports Server (NTRS)

Hochstein, L. I.; Tomlinson, G. A.

1988-01-01

The enzymes involved in the reduction of nitrogenous oxides are thought to be intermediates in denitrification processes. This review examines the roles of nitrate reductase, nitrite reductases, nitric oxide reductase, mechanisms of N-N bond formation, and nitrous oxide reductases.

Environmental controls on denitrifying communities and denitrification rates--Insights from molecular methods

USGS Publications Warehouse

Wallenstein, Matthew D.; Myrold, David D.; Firestone, Mary; Voytek, Mary

2006-01-01

The advent of molecular techniques has improved our understanding of the microbial communities responsible for denitrification and is beginning to address their role in controlling denitrification processes. There is a large diversity of bacteria, archaea, and fungi capable of denitrification, and their community composition is structured by long-term environmental drivers. The range of temperature and moisture conditions, substrate availability, competition, and disturbances have long-lasting legacies on denitrifier community structure. These communities may differ in physiology, environmental tolerances to pH and O2, growth rate, and enzyme kinetics. Although factors such as O2, pH, C availability, and NO3− pools affect instantaneous rates, these drivers act through the biotic community. This review summarizes the results of molecular investigations of denitrifier communities in natural environments and provides a framework for developing future research for addressing connections between denitrifier community structure and function.

Physical Controls on Oxygen Distribution and Denitrification Potential in the North West Arabian Sea

NASA Astrophysics Data System (ADS)

Queste, Bastien Y.; Vic, Clément; Heywood, Karen J.; Piontkovski, Sergey A.

2018-05-01

At suboxic oxygen concentrations, key biogeochemical cycles change and denitrification becomes the dominant remineralization pathway. Earth system models predict oxygen loss across most ocean basins in the next century; oxygen minimum zones near suboxia may become suboxic and therefore denitrifying. Using an ocean glider survey and historical data, we show oxygen loss in the Gulf of Oman (from 6-12 to <2 μmol kg-1) not represented in climatologies. Because of the nonlinearity between denitrification and oxygen concentration, resolutions of current Earth system models are too coarse to accurately estimate denitrification. We develop a novel physical proxy for oxygen from the glider data and use a high-resolution physical model to show eddy stirring of oxygen across the Gulf of Oman. We use the model to investigate spatial and seasonal differences in the ratio of oxic and suboxic water across the Gulf of Oman and waters exported to the wider Arabian Sea.

A soil infiltration system incorporated with sulfur-utilizing autotrophic denitrification (SISSAD) for domestic wastewater treatment.

PubMed

Kong, Zhe; Feng, Chuanping; Chen, Nan; Tong, Shuang; Zhang, Baogang; Hao, Chunbo; Chen, Kun

2014-05-01

To enhance the denitrification performance of soil infiltration, a soil infiltration system incorporated with sulfur-utilizing autotrophic denitrification (SISSAD) for domestic wastewater treatment was developed, and the SISSAD performance was evaluated using synthetic domestic wastewater in this study. The aerobic respiration and nitrification were mainly taken place in the upper aerobic stage (AES), removed 88.44% COD and 89.99% NH4(+)-N. Moreover, autotrophic denitrification occurred in the bottom anaerobic stage (ANS), using the CO2 produced from AES as inorganic carbon source. Results demonstrated that the SISSAD showed a remarkable performance on COD removal efficiency of 95.09%, 84.86% for NO3(-)-N, 95.25% for NH4(+)-N and 93.15% for TP. This research revealed the developed system exhibits a promising application prospect for domestic wastewater in the future. Copyright © 2014 Elsevier Ltd. All rights reserved.

Understanding Nitrifier Denitrification: How far are we?

NASA Astrophysics Data System (ADS)

Wrage-Mönnig, N.

2014-12-01

Nitrifier denitrification is the oxidation of ammonia (NH3) via hydroxylamine (NH2OH) to nitrite (NO2-) and subsequent reduction of NO2- via nitric oxide (NO) to the greenhouse gas nitrous oxide (N2O) and possibly to dinitrogen (N2) by autotrophic nitrifiers. Especially in recent years, a lot of research has been conducted on this pathway. Under some conditions, it might dominate the N2O production from soils. Methods for studying nitrifier denitrification include selective inhibition, stable isotope and isotopomer methods, molecular and modelling approaches. They are applied from pure culture and pot studies to the field scale, trying to improve our knowledge of the conditions and factors controlling nitrifier denitrification. But how far are we? What have we learned so far and what remains to be discovered? With this contribution, I am trying to give an update of our understanding of this less well-known but important pathway.

Influence of porewater advection on denitrification in carbonate sands: Evidence from repacked sediment column experiments

NASA Astrophysics Data System (ADS)

Santos, Isaac R.; Eyre, Bradley D.; Glud, Ronnie N.

2012-11-01

Porewater flow enhances mineralization rates in organic-poor permeable sands. Here, a series of sediment column experiments were undertaken to assess the potential effect of advective porewater transport on denitrification in permeable carbonate sands collected from Heron Island (Great Barrier Reef). Experimental conditions (flow path length, advection rate, and temperature) were manipulated to represent conditions similar to near shore tropical environments. HgCl2-poisoned controls were used to assess whether reactions were microbially mediated. Overall, significant correlations were found between oxygen consumption and N2 production. The N:O2 slope of 0.114 implied that about 75% of all the nitrogen mineralized was denitrified. A 4-fold increase in sediment column length (from 10 to 40 cm) resulted in an overall increase in oxygen consumption (1.6-fold), TCO2 production (1.8-fold), and denitrification (1.9-fold). Oxic respiration increased quickly until advection reached 80 L m-2 h-1 and then plateaued at higher advection rates. Interestingly, denitrification peaked (up to 336 μmol N2 m-2 h-1) at intermediate advection rates (30-80 L m-2 h-1). We speculate that intermediate advection rates enhance the development of microniches (i.e., steep oxygen gradients) within porous carbonate sands, perhaps providing optimum conditions for denitrification. The denitrification peak fell within the broad range of advection rates (often on scales of 1-100 L m-2 h-1) typically found on continental shelves implying that carbonate sands may play a major, but as yet unquantified, role in oceanic nitrogen budgets.

Redistribution of nitric acid in the Arctic lower stratosphere during the winter of 1996-1997

NASA Astrophysics Data System (ADS)

Irie, H.; Koike, M.; Kondo, Y.; Bodeker, G. E.; Danilin, M. Y.; Sasano, Y.

2001-10-01

Vertical profiles of HNO3, N2O, O3, and the aerosol extinction coefficient at 780 nm were observed by the Improved Limb Atmospheric Spectrometer (ILAS) on board the Advanced Earth Observing Satellite (ADEOS) during the Arctic winter of 1996-1997. Irreversible redistribution of HNO3 is evaluated using HNO3-N2O and HNO3-O3 correlations. Denitrification and nitrification started to be observed just after the Arctic vortex cooled to below the ice frost point (TICE) on February 10. Trajectory analyses show that denitrification occurred only in air masses, which were once cooled to near TICE and were kept at temperatures below the nitric acid trihydrate saturation threshold continuously for more than 4 days. Such a temperature history provides the necessary conditions for nucleation and growth of particles causing denitrification. The average extent of denitrification at 19 km reached 43% at the center of the vortex, suggesting that stratospheric ozone could be affected by denitrification deep inside the vortex. Denitrification (>2 ppbv) and nitrification (>1 ppbv) covered 40±10% and 35±10% of the vortex area, respectively. Redistributed numbers of HNO3 molecules at each altitude were calculated by integrating the area-weighted changes in the HNO3 concentration. The decreases in total HNO3 concentration at 17-21 km in late February and early March agreed with the increases at 12-15 km to within 25%, confirming conservation of HNO3 during sedimentation and evaporation of HNO3-containing polar stratospheric cloud particles.

[Feasibility of 3BER-S Process for the Deep Denitrification in Synch with the Removal of PAEs from Reclaimed Water].

PubMed

Xu, Peng-cheng; Hao, Rui-xia; Zhang, Ya; Wang, Dong-yue; Zhong, Li-yan; Xu, Hao-dan

2016-02-15

In order to investigate the feasibility of deep denitrification and simultaneous removing phthalate esters (PAEs) in the process of reclaimed water treatment uses three-dimensional biofilm-electrode reactor coupled with sulfur autotrophic deep denitrification technology (3BER-S), the technological characteristics and mechanisms were analyzed based on determining the static adsorption capacity of biofilm cultured active carbon fillers in 3BER-S reactor together with the operation results of dynamic denitrification and simultaneous PAEs removing. The results showed that the average adsorption rates of DBP, DEHP were 85.84% and 97.12% in the biofilm cultured active carbon fillers, the equilibrium adsorption capacities were 0.1426 mg x g(-1) and 0.162 mg(-1) and the time spans of reaching adsorption saturation were 120 min and 60 min, respectively; The existence of PAEs had no obvious effect on denitrification, the reactor effluent concentration of TN was in range of 1-2 mg x L(-1) before and after the addition of PAEs, and the average removal rate of TN reached above 94%; 3BER-S denitrification system showed significant ability in removing PAEs, leading to effluent concentrations of DBP and DEHP of no more than 6 microg x L(-1) with removal rates of above 96%; this was due to the synergistic effect of absorption, biodegradation and electrochemistry. After treatment with 3BER-S technology, DBP and DEHP in simulative municipal secondary effluent met the regulated limitation of The Reuse of Urban Recycling Water Quality Standard for Groundwater Recharge (GB/T 19772-2005).

Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments.

PubMed

Wang, Yanping; Wiatrowski, Heather A; John, Ria; Lin, Chu-Ching; Young, Lily Y; Kerkhof, Lee J; Yee, Nathan; Barkay, Tamar

2013-02-01

The contamination of groundwater with mercury (Hg) is an increasing problem worldwide. Yet, little is known about the interactions of Hg with microorganisms and their processes in subsurface environments. We tested the impact of Hg on denitrification in nitrate reducing enrichment cultures derived from subsurface sediments from the Oak Ridge Integrated Field Research Challenge site, where nitrate is a major contaminant and where bioremediation efforts are in progress. We observed an inverse relationship between Hg concentrations and onset and rates of denitrification in nitrate enrichment cultures containing between 53 and 1.1 μM of inorganic Hg; higher Hg concentrations increasingly extended the time to onset of denitrification and inhibited denitrification rates. Microbial community complexity, as indicated by terminal restriction fragment length polymorphism (tRFLP) analysis of the 16S rRNA genes, declined with increasing Hg concentrations; at the 312 nM Hg treatment, a single tRFLP peak was detected representing a culture of Bradyrhizobium sp. that possessed the merA gene indicating a potential for Hg reduction. A culture identified as Bradyrhizobium sp. strain FRC01 with an identical 16S rRNA sequence to that of the enriched peak in the tRFLP patterns, reduced Hg(II) to Hg(0) and carried merA whose amino acid sequence has 97 % identity to merA from the Proteobacteria and Firmicutes. This study demonstrates that in subsurface sediment incubations, Hg may inhibit denitrification and that inhibition may be alleviated when Hg resistant denitrifying Bradyrhizobium spp. detoxify Hg by its reduction to the volatile elemental form.

Heterotrophic denitrification of aquaculture effluent using fluidized sand biofilters

USDA-ARS?s Scientific Manuscript database

The ability to consistently and cost-effectively reduce nitrate-nitrogen loads in effluent from recirculating aquaculture systems would enhance the industry's environmental stewardship and allow improved facility proximity to large markets in sensitive watersheds. Heterotrophic denitrification techn...

Excessive use of nitrogen in Chinese agriculture results in high N2O/(N2O+N2) product ratio of denitrification, primarily due to acidification of the soils

PubMed Central

Qu, Zhi; Wang, Jingguo; Almøy, Trygve; Bakken, Lars R

2014-01-01

China is the world's largest producer and consumer of fertilizer N, and decades of overuse has caused nitrate leaching and possibly soil acidification. We hypothesized that this would enhance the soils' propensity to emit N2O from denitrification by reducing the expression of the enzyme N2O reductase. We investigated this by standardized oxic/anoxic incubations of soils from five long-term fertilization experiments in different regions of China. After adjusting the nitrate concentration to 2 mM, we measured oxic respiration (R), potential denitrification (D), substrate-induced denitrification, and the denitrification product stoichiometry (NO, N2O, N2). Soils with a history of high fertilizer N levels had high N2O/(N2O+N2) ratios, but only in those field experiments where soil pH had been lowered by N fertilization. By comparing all soils, we found a strong negative correlation between pH and the N2O/(N2O+N2) product ratio (r2 = 0.759, P < 0.001). In contrast, the potential denitrification (D) was found to be a linear function of oxic respiration (R), and the ratio D/R was largely unaffected by soil pH. The immediate effect of liming acidified soils was lowered N2O/(N2O+N2) ratios. The results provide evidence that soil pH has a marginal direct effect on potential denitrification, but that it is the master variable controlling the percentage of denitrified N emitted as N2O. It has been known for long that low pH may result in high N2O/(N2O+N2) product ratios of denitrification, but our documentation of a pervasive pH-control of this ratio across soil types and management practices is new. The results are in good agreement with new understanding of how pH may interfere with the expression of N2O reductase. We argue that the management of soil pH should be high on the agenda for mitigating N2O emissions in the future, particularly for countries where ongoing intensification of plant production is likely to acidify the soils. PMID:24249526

Relationship Between Watershed Land Use and Denitrification Enzyme Activity in Headwater Streams

EPA Science Inventory

Headwater streams are the dominant land-water interface across much of the landscape. Denitrification is an important ecological service provided by headwater streams. Anthropogenic inputs of N to terrestrial ecosystems largely result from agricultural practices. Animal agricultu...

Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities

PubMed Central

Green, Stefan J.; Rishishwar, Lavanya; Prakash, Om; Katz, Lee S.; Mariño-Ramírez, Leonardo; Jordan, I. King; Munk, Christine; Ivanova, Natalia; Mikhailova, Natalia; Watson, David B.; Brown, Steven D.; Palumbo, Anthony V.; Brooks, Scott C.

2012-01-01

We report the first genome sequences for six strains of Rhodanobacter species isolated from a variety of soil and subsurface environments. Three of these strains are capable of complete denitrification and three others are not. However, all six strains contain most of the genes required for the respiration of nitrate to gaseous nitrogen. The nondenitrifying members of the genus lack only the gene for nitrate reduction, the first step in the full denitrification pathway. The data suggest that the environmental role of bacteria from the genus Rhodanobacter should be reevaluated. PMID:22843592

Complete genome sequence of the aerobically denitrifying thermophilic bacterium Chelatococcus daeguensis TAD1.

PubMed

Yang, Yunlong; Lin, Ershu; Huang, Shaobin

Chelatococcus daeguensis TAD1 is a themophilic bacterium isolated from a biotrickling filter used to treat NOx in Ruiming Power Plant, located in Guangzhou, China, which shows an excellent aerobic denitrification activity at high temperature. The complete genome sequence of this strain was reported in the present study. Genes related to the aerobic denitrification were identified through whole genome analysis. This work will facilitate the mechanism of aerobic denitrification and provide evidence for its potential application in the nitrogen removal. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Simultaneous phosphorus uptake and denitrification by EBPR-r biofilm under aerobic conditions: effect of dissolved oxygen.

PubMed

Wong, Pan Yu; Ginige, Maneesha P; Kaksonen, Anna H; Cord-Ruwisch, Ralf; Sutton, David C; Cheng, Ka Yu

2015-01-01

A biofilm process, termed enhanced biological phosphorus removal and recovery (EBPR-r), was recently developed as a post-denitrification approach to facilitate phosphorus (P) recovery from wastewater. Although simultaneous P uptake and denitrification was achieved despite substantial intrusion of dissolved oxygen (DO >6 mg/L), to what extent DO affects the process was unclear. Hence, in this study a series of batch experiments was conducted to assess the activity of the biofilm under various DO concentrations. The biofilm was first allowed to store acetate (as internal storage) under anaerobic conditions, and was then subjected to various conditions for P uptake (DO: 0-8 mg/L; nitrate: 10 mg-N/L; phosphate: 8 mg-P/L). The results suggest that even at a saturating DO concentration (8 mg/L), the biofilm could take up P and denitrify efficiently (0.70 mmol e(-)/g total solids*h). However, such aerobic denitrification activity was reduced when the biofilm structure was physically disturbed, suggesting that this phenomenon was a consequence of the presence of oxygen gradient across the biofilm. We conclude that when a biofilm system is used, EBPR-r can be effectively operated as a post-denitrification process, even when oxygen intrusion occurs.

Isotopic evidence of nitrate sources and denitrification in the Mississippi River, Illinois

USGS Publications Warehouse

Panno, S.V.; Hackley, Keith C.; Kelly, W.R.; Hwang, H.-H.

2006-01-01

Anthropogenic nitrate (NO3-) within the Mississippi-Atchafalaya River basin and discharge to the Gulf of Mexico has been linked to serious environmental problems. The sources of this NO 3- have been estimated by others using mass balance methods; however, there is considerable uncertainty in these estimates. Part of the uncertainty is the degree of denitrification that the NO3- has undergone. The isotopic composition of NO3- in the Mississippi River adjacent to Illinois and tile drain (subsurface drain) discharge in agricultural areas of east-central Illinois was examined using N and O isotopes to help identify the major sources of NO 3- and assess the degree of denitrification in the samples. The isotopic evidence suggests that most of the NO3- in the river is primarily derived from synthetic fertilizers and soil organic N, which is consistent with published estimates of N inputs to the Mississippi River. The 1:2 relationship between ??18O and ??15N also indicate that, depending on sample location and season, NO3- in the river and tile drains lias undergone significant denitrification, ranging from about 0 to 55%. The majority of the denitrification appears to have occurred before discharge into the Mississippi River. ?? ASA, CSSA, SSSA.

Contribution of different PSC types to Arctic ozone depletion caused by chlorine activation and denitrification

NASA Astrophysics Data System (ADS)

Kirner, Oliver; Khosrawi, Farah; Müller, Rolf; Weimer, Michael; Ruhnke, Roland

2017-04-01

Heterogeneous reactions on the surfaces of PSC particles and denitrification of the stratosphere are the cause for polar ozone depletion in spring. In a former study we investigated the impact of different types of PSCs on Antarctic ozone depletion with the help of the chemistry-climate model ECHAM5/MESSy Atmospheric chemistry (EMAC). In this study, we investigate the impact of PSCs on Arctic ozone loss. One standard and four sensitivity EMAC simulations (nudged with ERA-Interim) have been performed to evaluate the contribution of liquid, NAT and ice particles to ozone depletion in the Arctic winters 2010/2011 and 2015/2016 due to chlorine activation by heterogeneous chemistry on their surfaces and due to denitrification of the stratosphere. In the first three sensitivity simulations, we changed the heterogeneous chemistry on PSC particles by switching on and off the chemistry on liquid, NAT and ice particles. One further sensitivity simulation without NAT formation (only liquid and ice particles) was performed to evaluate the contribution of NAT to Arctic ozone depletion due to denitrification of the stratosphere. With the help of these different EMAC simulations, we will show the significance of liquid, NAT and ice particles to Arctic ozone depletion caused by chlorine activation and denitrification.

Interactions between Benthic Copepods, Bacteria and Diatoms Promote Nitrogen Retention in Intertidal Marine Sediments

PubMed Central

Stock, Willem; Heylen, Kim; Sabbe, Koen; Willems, Anne; De Troch, Marleen

2014-01-01

The present study aims at evaluating the impact of diatoms and copepods on microbial processes mediating nitrate removal in fine-grained intertidal sediments. More specifically, we studied the interactions between copepods, diatoms and bacteria in relation to their effects on nitrate reduction and denitrification. Microcosms containing defaunated marine sediments were subjected to different treatments: an excess of nitrate, copepods, diatoms (Navicula sp.), a combination of copepods and diatoms, and spent medium from copepods. The microcosms were incubated for seven and a half days, after which nutrient concentrations and denitrification potential were measured. Ammonium concentrations were highest in the treatments with copepods or their spent medium, whilst denitrification potential was lowest in these treatments, suggesting that copepods enhance dissimilatory nitrate reduction to ammonium over denitrification. We hypothesize that this is an indirect effect, by providing extra carbon for the bacterial community through the copepods' excretion products, thus changing the C/N ratio in favour of dissimilatory nitrate reduction. Diatoms alone had no effect on the nitrogen fluxes, but they did enhance the effect of copepods, possibly by influencing the quantity and quality of the copepods' excretion products. Our results show that small-scale biological interactions between bacteria, copepods and diatoms can have an important impact on denitrification and hence sediment nitrogen fluxes. PMID:25360602

Denitrification in a sand and gravel aquifer

USGS Publications Warehouse

Smith, R.L.; Duff, J.H.

1988-01-01

Denitrification was assayed by the acetylene blockage technique in slurried core material obtained from a freshwater sand and gravel aquifer. The aquifer, which has been contaminated with treated sewage for more than 50 years, had a contaminant plume greater than 3.5-km long. Near the contaminant source, groundwater nitrate concentrations were greater than 1 mM, whereas 0.25 km downgradient the central portion of the contaminant plume was anoxic and contained no detectable nitrate. Samples were obtained along the longitudinal axis of the plume (0 to 0.25 km) at several depths from four sites. Denitrification was evident at in situ nitrate concentrations at all sites tested; rates ranged from 2.3 to 260 pmol of N20 produced (g of wet sediment)-' h-'. Rates were highest nearest the contaminant source and decreased with increasing distance downgradient. Denitrification was the predominant nitrate-reducing activity; no evidence was found for nitrate reduction to ammonium at any site. Denitrifying activity was carbon limited and not nitrate limited, except when the ambient nitrate level was less than the detection limit, in which case, even when amended with high concentrations of glucose and nitrate, the capacity to denitrify on a short-term basis was lacking. These results demonstrate that denitrification can occur in groundwater systems and, thereby, serve as a mechanism for nitrate remoyal from groundwater.

Characterization of Biogenic Gas and Mineral Formation Process by Denitrification in Porous Media

NASA Astrophysics Data System (ADS)

Hall, C. A.; Kim, D.; Mahabadi, N.; van Paassen, L. A.

2017-12-01

Biologically mediated processes have been regarded and developed as an alternative approach to traditional ground improvement techniques. Denitrification has been investigated as a potential ground improvement process towards liquefaction hazard mitigation. During denitrification, microorganisms reduce nitrate to dinitrogen gas and facilitate calcium carbonate precipitation as a by-product under adequate environmental conditions. The formation of dinitrogen gas desaturates soils and allows for potential pore pressure dampening during earthquake events. While, precipitation of calcium carbonate can improve the mechanical properties by filling the voids and cementing soil particles. As a result of small changes in gas and mineral phases, the mechanical properties of soils can be significantly affected. Prior research has primarily focused on quantitative analysis of overall residual calcium carbonate mineral and biogenic gas products in lab-scale porous media. However, the distribution of these products at the pore-scale has not been well-investigated. In this research, denitrification is activated in a microfluidic chip simulating a homogenous pore structure. The denitrification process is monitored by sequential image capture, where gas and mineral phase changes are evaluated by image processing. Analysis of these images correspond with previous findings, which demonstrate that biogenic gas behaviour at the pore scale is affected by the balance between reaction, diffusion, and convection rates.

Central Composite Design (CCD) applied for statistical optimization of glucose and sucrose binary carbon mixture in enhancing the denitrification process

NASA Astrophysics Data System (ADS)

Lim, Jun-Wei; Beh, Hoe-Guan; Ching, Dennis Ling Chuan; Ho, Yeek-Chia; Baloo, Lavania; Bashir, Mohammed J. K.; Wee, Seng-Kew

2017-11-01

The present study provides an insight into the optimization of a glucose and sucrose mixture to enhance the denitrification process. Central Composite Design was applied to design the batch experiments with the factors of glucose and sucrose measured as carbon-to-nitrogen (C:N) ratio each and the response of percentage removal of nitrate-nitrogen (NO3 --N). Results showed that the polynomial regression model of NO3 --N removal had been successfully derived, capable of describing the interactive relationships of glucose and sucrose mixture that influenced the denitrification process. Furthermore, the presence of glucose was noticed to have more consequential effect on NO3 --N removal as opposed to sucrose. The optimum carbon sources mixture to achieve complete removal of NO3 --N required lesser glucose (C:N ratio of 1.0:1.0) than sucrose (C:N ratio of 2.4:1.0). At the optimum glucose and sucrose mixture, the activated sludge showed faster acclimation towards glucose used to perform the denitrification process. Later upon the acclimation with sucrose, the glucose uptake rate by the activated sludge abated. Therefore, it is vital to optimize the added carbon sources mixture to ensure the rapid and complete removal of NO3 --N via the denitrification process.

Enriched groundwater seeps in two Vermont headwater catchments are hotspots of nitrate turnover

USGS Publications Warehouse

Kaur, Amninder J.; Ross, Donald S.; Shanley, James B.; Yatzor, Anna R.

2016-01-01

Groundwater seeps in upland catchments are often enriched relative to stream waters, higher in pH, Ca2+ and sometimes NO3¯. These seeps could be a NO3¯ sink because of increased denitrification potential but may also be ‘hotspots’ for nitrification because of the relative enrichment. We compared seep soils with nearby well-drained soils in two upland forested watersheds in Vermont that are sites of ongoing biogeochemical studies. Gross N transformation rates were measured over three years along with denitrification rates in the third year. Gross ammonification rates were not different between the seep and upland soils but gross nitrification rates were about 3 × higher in the seep soils. Net nitrification rates trended higher in the upland soils and NO3¯ consumption (gross—net) was 8 times higher in the seep soils. The average denitrification rate for seep soils was about equal to the difference in NO3¯ consumption between seep and upland soils, suggesting denitrification can make up the difference. Temporal variation in seep water NO3¯ concentration was correlated with watershed outlet NO3¯ concentration. However, it is not clear that in-seep processes greatly altered seep water NO3¯ contribution to the streams. Seep soils appear to be hotspots of both nitrification and denitrification.

Study of a combined heterotrophic and sulfur autotrophic denitrification technology for removal of nitrate in water.

PubMed

Liu, Huijuan; Jiang, Wei; Wan, Dongjin; Qu, Jiuhui

2009-09-30

A combined two-step process of heterotrophic denitrification in a fluidized reactor and sulfur autotrophic denitrification processes (CHSAD) was developed for the removal of nitrate in drinking water. In this process, the advantage of high efficiency of heterotrophic denitrification with non-excessive methanol and the advantage of non-pollution of sulfur autotriphic denitrification were integrated in this CHSAD process. And, this CHSAD process had the capacity of pH balance and could control the concentration of SO(4)(2-) in effluent by adjusting the operation condition. When the influent nitrate was 30 mg NO(3)(-)-N/L, the reactor could be operated efficiently at the hydraulic retention time (HRT) ranging from 20 to 40 min with C:N ratio (mg CH(3)OH:mg NO(3)(-)-N) of 2.0 (methanol as carbon source). The nitrate removal was nearly 100% and there was no accumulated nitrite or residual methanol in the effluent. The effluent pH was about 7.5 and the sulfate concentration was lower than 130 mg/L. The maximum volume-loading rate of the reactor was 2.16 kg NO(3)(-)-N/(m(3)d). The biomass and scanning electron microscopy graphs of biofilm were also analyzed.

Denitrification in a large river: consideration of geomorphic controls on microbial activity and community structure.

PubMed

Tatariw, Corianne; Chapman, Elise L; Sponseller, Ryan A; Mortazavi, Behzad; Edmonds, Jennifer W

2013-10-01

Ecological theory argues that the controls over ecosystem processes are structured hierarchically, with broader-scale drivers acting as constraints over the interactions and dynamics at nested levels of organization. In river ecosystems, these interactions may arise from broadscale variation in channel form that directly shapes benthic habitat structure and indirectly constrains resource supply and biological activity within individual reaches. To evaluate these interactions, we identified sediment characteristics, water chemistry, and denitrifier community structure as factors influencing benthic denitrification rates in a sixth-order river that flows through two physiographic provinces and the transitional zone between them, each with distinct geomorphological properties. We found that denitrification rates tracked spatial changes in sediment characteristics and varied seasonally with expected trends in stream primary production. Highest rates were observed during the spring and summer seasons in the physiographic province dominated by fine-grained sediments, illustrating how large-scale changes in river structure can constrain the location of denitrification hotspots. In addition, nirS and nirK community structure each responded differently to variation in channel form, possibly due to changes in dissolved oxygen and organic matter supply. This shift in denitrifier community structure coincident with higher rates of N removal via denitrification suggests that microbial community structure may influence biogeochemical processes.

Effect of substrate availability on nitrous oxide production by deammonification processes under anoxic conditions

PubMed Central

Schneider, Yvonne; Beier, Maike; Rosenwinkel, Karl‐Heinz

2012-01-01

Summary Due to its high global warming potential, nitrous oxide (N2O) emissions from wastewater treatment processes have recently received a high degree of attention. Nevertheless, there is still a lack of information regarding the microbiological processes leading to N2O production. In this study, two lab‐scale sequencing batch reactors were operated with deammonification biomass to investigate the role of denitrification and the influence of substrate availability regarding N2O formation during the anoxic phase of deammonification. Three different operational phases were established: within the first phase conversion by anammox was favoured and after a transition phase, denitrification activity was promoted. Low nitrous oxide production was observed during stable operation aiming for anammox conversion. Pulsed inflow of the wastewater containing ammonium (NH4+) and nitrite (NO2‐) led to increased N2O production rates. Within the period of denitrification as dominating nitrogen conversion process, the nitrous oxide concentration level was higher during continuous inflow conditions, but the reaction to pulsed inflow was less pronounced. The results indicated that denitrification was responsible for N2O formation from the deammonification biomass. Operational settings to achieve suppression of denitrification processes to a large extend were deducted from the results of the experiments. PMID:22296600

Denitrification: an important pathway for nitrous oxide production in tropical mangrove sediments (Goa, India).

PubMed

Fernandes, Sheryl Oliveira; Bharathi, P A Loka; Bonin, Patricia C; Michotey, Valérie D

2010-01-01

Net nitrous oxide production and denitrification activity were measured in two mangrove ecosystems of Goa, India. The relatively pristine site Tuvem was compared to Divar, which is prone to high nutrient input. Stratified sampling at 2-cm intervals within the 0- to 10-cm depth range showed that N2O production at both the locations decreased with depth. Elevated denitrification activity at Divar resulted in maximum production of up to 1.95 nmol N2O-N g(-1) h(-1) at 2 to 4 cm, which was three times higher than at Tuvem. Detailed investigations to understand the major pathway contributing to N2O production performed at Tuvem showed that incomplete denitrification was responsible for up to 43 to 93% of N2O production. Nitrous oxide production rates closely correlated to nitrite concentration (n = 15; r = -0.47; p < 0.05) and denitrifier abundance (r = 0.55; p < 0.05), suggesting that nitrite utilization by microbial activity leads to N2O production. Nitrous oxide production through nitrification was below detection, affirming that denitrification is the major pathway responsible for production of the greenhouse gas. Net N2O production in these mangrove systems are comparatively higher than those reported from other natural estuarine sediments and therefore warrant mitigation measures.

Nitrogen removal from sludge digester liquids by nitrification/denitrification or partial nitritation/anammox: environmental and economical considerations.

PubMed

Fux, C; Siegrist, H

2004-01-01

In wastewater treatment plants with anaerobic sludge digestion, 15-20% of the nitrogen load is recirculated to the main stream with the return liquors from dewatering. Separate treatment of this ammonium-rich digester supernatant significantly reduces the nitrogen load of the activated sludge system. Two biological applications are considered for nitrogen elimination: (i) classical autotrophic nitrification/heterotrophic denitrification and (ii) partial nitritation/autotrophic anaerobic ammonium oxidation (anammox). With both applications 85-90% nitrogen removal can be achieved, but there are considerable differences in terms of sustainability and costs. The final gaseous products for heterotrophic denitrification are generally not measured and are assumed to be nitrogen gas (N2). However, significant nitrous oxide (N2O) production can occur at elevated nitrite concentrations in the reactor. Denitrification via nitrite instead of nitrate has been promoted in recent years in order to reduce the oxygen and the organic carbon requirements. Obviously this "achievement" turns out to be rather disadvantageous from an overall environmental point of view. On the other hand no unfavorable intermediates are emitted during anaerobic ammonium oxidation. A cost estimate for both applications demonstrates that partial nitritation/anammox is also more economical than classical nitrification/denitrification. Therefore autotrophic nitrogen elimination should be used in future to treat ammonium-rich sludge liquors.

Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions.

PubMed

Liu, Jingjing; Sun, Faqian; Wang, Liang; Ju, Xi; Wu, Weixiang; Chen, Yingxu

2014-01-01

Methane can be used as an alternative carbon source in biological denitrification because it is nontoxic, widely available and relatively inexpensive. A microbial consortium involved in methane oxidation coupled to denitrification (MOD) was enriched with nitrite and nitrate as electron acceptors under micro-aerobic conditions. The 16S rRNA gene combined with pmoA phylogeny of methanotrophs and nirK phylogeny of denitrifiers were analysed to reveal the dominant microbial populations and functional microorganisms. Real-time quantitative polymerase chain reaction results showed high numbers of methanotrophs and denitrifiers in the enriched consortium. The 16S rRNA gene clone library revealed that Methylococcaceae and Methylophilaceae were the dominant populations in the MOD ecosystem. Phylogenetic analyses of pmoA gene clone libraries indicated that all methanotrophs belonged to Methylococcaceae, a type I methanotroph employing the ribulose monophosphate pathway for methane oxidation. Methylotrophic denitrifiers of the Methylophilaceae that can utilize organic intermediates (i.e. formaldehyde, citrate and acetate) released from the methanotrophs played a vital role in aerobic denitrification. This study is the first report to confirm micro-aerobic denitrification and to make phylogenetic and functional assignments for some members of the microbial assemblages involved in MOD. © 2013 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Alternative solutions for the bio-denitrification of landfill leachates using pine bark and compost.

PubMed

Trois, Cristina; Pisano, Giulia; Oxarango, Laurent

2010-06-15

Nitrified leachate may still require an additional bio-denitrification step, which occurs with the addition of often-expensive chemicals as carbon source. This study explores the applicability of low-cost carbon sources such as garden refuse compost and pine bark for the denitrification of high strength landfill leachates. The overall objective is to assess efficiency, kinetics and performance of the substrates in the removal of high nitrate concentrations. Garden refuse and pine bark are currently disposed of in general waste landfills in South Africa, separated from the main waste stream. A secondary objective is to assess the feasibility of re-using green waste as by-product of an integrated waste management system. Denitrification processes in fixed bed reactors were simulated at laboratory scale using anaerobic batch tests and leaching columns packed with immature compost and pine bark. Biologically treated leachate from a Sequencing Batch Reactor (SBR) with nitrate concentrations of 350, 700 and 1100 mgN/l were used for the trials. Preliminary results suggest that, passed the acclimatization step (40 days for both substrates), full denitrification is achieved in 10-20 days for the pine bark and 30-40 days for the compost. Copyright 2010 Elsevier B.V. All rights reserved.

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach

PubMed Central

Bowman, Jeff S.; Piehler, Michael

2017-01-01

The eastern oyster (Crassostrea virginica) is a foundation species providing significant ecosystem services. However, the roles of oyster microbiomes have not been integrated into any of the services, particularly nitrogen removal through denitrification. We investigated the composition and denitrification potential of oyster microbiomes with an approach that combined 16S rRNA gene analysis, metabolic inference, qPCR of the nitrous oxide reductase gene (nosZ), and N2 flux measurements. Microbiomes of the oyster digestive gland, the oyster shell, and sediments adjacent to the oyster reef were examined based on next generation sequencing (NGS) of 16S rRNA gene amplicons. Denitrification potentials of the microbiomes were determined by metabolic inferences using a customized denitrification gene and genome database with the paprica (PAthway PRediction by phylogenetIC plAcement) bioinformatics pipeline. Denitrification genes examined included nitrite reductase (nirS and nirK) and nitrous oxide reductase (nosZ), which was further subdivided by genotype into clade I (nosZI) or clade II (nosZII). Continuous flow through experiments measuring N2 fluxes were conducted with the oysters, shells, and sediments to compare denitrification activities. Paprica properly classified the composition of microbiomes, showing similar classification results from Silva, Greengenes and RDP databases. Microbiomes of the oyster digestive glands and shells were quite different from each other and from the sediments. The relative abundance of denitrifying bacteria inferred by paprica was higher in oysters and shells than in sediments suggesting that oysters act as hotspots for denitrification in the marine environment. Similarly, the inferred nosZI gene abundances were also higher in the oyster and shell microbiomes than in the sediment microbiome. Gene abundances for nosZI were verified with qPCR of nosZI genes, which showed a significant positive correlation (F1,7 = 14.7, p = 6.0x10-3, R2 = 0.68). N2 flux rates were significantly higher in the oyster (364.4 ± 23.5 μmol N-N2 m-2 h-1) and oyster shell (355.3 ± 6.4 μmol N-N2 m-2 h-1) compared to the sediment (270.5 ± 20.1 μmol N-N2 m-2 h-1). Thus, bacteria carrying nosZI genes were found to be an important denitrifier, facilitating nitrogen removal in oyster reefs. In addition, this is the first study to validate the use of 16S gene based metabolic inference as a method for determining microbiome function, such as denitrification, by comparing inference results with qPCR gene quantification and rate measurements. PMID:28934286

The mechanism of oxygen isotopic fractionation during fungal denitrification - A pure culture study

NASA Astrophysics Data System (ADS)

Wrage-Moennig, Nicole; Rohe, Lena; Anderson, Traute-Heidi; Braker, Gesche; Flessa, Heinz; Giesemann, Annette; Lewicka-Szczebak, Dominika; Well, Reinhard

2014-05-01

Nitrous oxide (N2O) from soil denitrification originates from bacteria and - to an unknown extent - also from fungi. During fungal denitrification, oxygen (O) exchange takes place between H2O and intermediates of the denitrification process as in bacterial exchange[1,2]. However, information about enzymes involved in fungal O exchanges and the associated fractionation effects is lacking. The objectives of this study were to estimate the O fractionation and O exchange during the fungal denitrifying steps using a conceptual model[2] adapted from concepts for bacterial denitrification[3], implementing controls of O exchange proposed by Aerssens, et al.[4] and using fractionation models by Snider et al.[5] Six different pure fungal cultures (five Hypocreales, one Sordariales) known to be capable of denitrification were incubated under anaerobic conditions, either with nitrite or nitrate. Gas samples were analyzed for N2O concentration and its isotopic signatures (SP, average δ15N, δ18O). To investigate O exchange, both treatments were also established with 18O-labelled water as a tracer in the medium. The Hypocreales strains showed O exchange mainly at NO2- reductase (Nir) with NO2- as electron acceptor and no additional O exchange at NO3- reductase (Nar) with NO3- as electron acceptor. The only Hypocreales species having higher O exchange with NO3- than with NO2- also showed O exchange at Nar. The Sordariales species tested seems capable of O exchange at NO reductase (Nor) additionally to O exchange at Nir with NO2-. The data will help to better interpret stable isotope values of N2O from soils. .[1] D. M. Kool, N. Wrage, O. Oenema, J. Dolfing, J. W. Van Groenigen. Oxygen exchange between (de)nitrification intermediates and H2O and its implications for source determination of NO?3- and N2O: a review. Rapid Commun. Mass Spec. 2007, 21, 3569. [2] L. Rohe, T.-H. Anderson, B. Braker, H. Flessa, A. Giesemann, N. Wrage-Mönnig, R. Well. Fungal Oxygen Exchange between Denitrification Intermediates and Water. Rapid Commun. Mass Spec. 2014, 28, 377. [3] K. L. Casciotti, J. K. Böhlke, M. R. McIlvin, S. J. Mroczkowski, J. E. Hannon. Oxygen Isotopes in Nitrite: Analysis, Calibration, and Equilibration. Anal. Chem. 2007, 79, 2427. [4] E. Aerssens, J. M. Tiedje, B. A. Averill. Isotope Labeling Studies on the Mechanisms of N-bond Formation in Denitrification J. Biol. Chem. 1986, 261, 9652. [5] D. M. Snider, J. J. Venkiteswaran, S. L. Schiff, J. Spoelstra. Deciphering the oxygen isotope composition of nitrous oxide produced by nitrification. Glob. Change Biol. 2012, 18, 356.

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach.

PubMed

Arfken, Ann; Song, Bongkeun; Bowman, Jeff S; Piehler, Michael

2017-01-01

The eastern oyster (Crassostrea virginica) is a foundation species providing significant ecosystem services. However, the roles of oyster microbiomes have not been integrated into any of the services, particularly nitrogen removal through denitrification. We investigated the composition and denitrification potential of oyster microbiomes with an approach that combined 16S rRNA gene analysis, metabolic inference, qPCR of the nitrous oxide reductase gene (nosZ), and N2 flux measurements. Microbiomes of the oyster digestive gland, the oyster shell, and sediments adjacent to the oyster reef were examined based on next generation sequencing (NGS) of 16S rRNA gene amplicons. Denitrification potentials of the microbiomes were determined by metabolic inferences using a customized denitrification gene and genome database with the paprica (PAthway PRediction by phylogenetIC plAcement) bioinformatics pipeline. Denitrification genes examined included nitrite reductase (nirS and nirK) and nitrous oxide reductase (nosZ), which was further subdivided by genotype into clade I (nosZI) or clade II (nosZII). Continuous flow through experiments measuring N2 fluxes were conducted with the oysters, shells, and sediments to compare denitrification activities. Paprica properly classified the composition of microbiomes, showing similar classification results from Silva, Greengenes and RDP databases. Microbiomes of the oyster digestive glands and shells were quite different from each other and from the sediments. The relative abundance of denitrifying bacteria inferred by paprica was higher in oysters and shells than in sediments suggesting that oysters act as hotspots for denitrification in the marine environment. Similarly, the inferred nosZI gene abundances were also higher in the oyster and shell microbiomes than in the sediment microbiome. Gene abundances for nosZI were verified with qPCR of nosZI genes, which showed a significant positive correlation (F1,7 = 14.7, p = 6.0x10-3, R2 = 0.68). N2 flux rates were significantly higher in the oyster (364.4 ± 23.5 μmol N-N2 m-2 h-1) and oyster shell (355.3 ± 6.4 μmol N-N2 m-2 h-1) compared to the sediment (270.5 ± 20.1 μmol N-N2 m-2 h-1). Thus, bacteria carrying nosZI genes were found to be an important denitrifier, facilitating nitrogen removal in oyster reefs. In addition, this is the first study to validate the use of 16S gene based metabolic inference as a method for determining microbiome function, such as denitrification, by comparing inference results with qPCR gene quantification and rate measurements.

Modeling nitrate removal in a denitrification bed

USDA-ARS?s Scientific Manuscript database

Denitrification beds are being promoted to reduce nitrate concentrations in agricultural drainage water to alleviate the adverse environmental effects associated with nitrate pollution in surface water. In this system, water flows through a trench filled with a carbon media where nitrate is transfor...

Microbial Biomass and Activity in Geomorphic Features in Forested and Urban Restored and Degraded Streams

EPA Science Inventory

Geomorphic spatial heterogeneity affects sediment denitrification, an anaerobic microbial process that results in the loss of nitrogen (N), and other anaerobic microbial processes such as methanogenesis in urban streams. We measured sediment denitrification potential (DEA), metha...

Denitrification Rates in a Lake Superior Coastal Wetland

EPA Science Inventory

In recent years, nitrogen has increased substantially in the Nation’s aquatic ecosystems mainly due to the increased use of fertilizers and land use practices. Denitrification is a process that can potentially mitigate this increased influx of fixed nitrate. Coastal wetlands are ...

Restoring “hot spots” of denitrification along hydrologic flow-paths

EPA Science Inventory

Objectives: What are the relationships among N, C, and hydrology in degraded streams? What level of biogeochemical function remains with respect to N transformation processes (i.e. denitrification)? What could the results tell us about effectively restoring streams to process ...

Denitrification in Alluvial Wetlands in an Urban Landscape

EPA Science Inventory

Riparian wetlands have been shown to be particularly effective “sinks” for nitrate-N (NO3-), minimizing the downstream export of nitrogen (N) to streams and coastal water bodies. However, the vast majority of riparian denitrification research has been in agricultural and forested...

Herbicide and antibiotic removal by woodchip denitrification filters: Sorption processes

USDA-ARS?s Scientific Manuscript database

Batch sorption and desorption experiments to evaluate the retention of the agrichemicals onto wood chips from an in situ wood chip denitrification wall were conducted for atrazine, enrofloxacin, monensin and sulfamethazine. Estimated Freundlich distribution coefficients (Kf) showed that the order of...

Herbicide and antibiotic removal by woodchip denitrification filters: Sorption processes

USDA-ARS?s Scientific Manuscript database

Batch sorption and desorption experiments to evaluate the retention of the agrichemicals onto wood chips from an in situ wood chip denitrification wall were conducted for atrazine, enrofloxacin, monensin, and sulfamethazine. Estimated Freundlich distribution coefficients (Kf) showed that the order o...

Low elevation inland habitats of the Willamette River floodplain support enhanced denitrification

EPA Science Inventory

Floodplain nitrate removal via denitrification in sediment provides an important ecosystem service that may be a valuable sink for nitrate pollution. At this time, much floodplain restoration is taking place with little consideration for in-situ nutrient processing, necessitating...

Mimicking floodplain reconnection and disconnection using 15N mesocosm incubations

NASA Astrophysics Data System (ADS)

Welti, N.; Bondar-Kunze, E.; Mair, M.; Bonin, P.; Wanek, W.; Pinay, G.; Hein, T.

2012-11-01

Floodplain restoration changes the nitrate delivery pattern and dissolved organic matter pool in backwaters, though the effects these changes have are not yet well known. We performed two mesocosm experiments on floodplain sediments to quantify the nitrate metabolism in two types of floodplains. Rates of denitrification, dissimilatory nitrate reduction to ammonium (DNRA) and anammox were measured using 15N-NO3 tracer additions in mesocosms of undisturbed floodplain sediments originating from (1) restored and (2) disconnected sites in the Alluvial Zone National Park on the Danube River downstream of Vienna, Austria. DNRA rates were an order of magnitude lower than denitrification and neither rate was affected by changes in nitrate delivery pattern or organic matter quality. Anammox was not detected at any of the sites. Denitrification was out-competed by assimilation, which was estimated to use up to 70% of the available nitrate. Overall, denitrification was higher in the restored sites, with mean rates of 5.7 ± 2.8 mmol N m-2 h-1 compared to the disconnected site (0.6 ± 0.5 mmol N m-2 h-1). In addition, ratios of N2O : N2 were lower in the restored site indicating a more complete denitrification. Nitrate addition had neither an effect on denitrification, nor on the N2O : N2 ratio. However, DOM (dissolved organic matter) quality significantly changed the N2O : N2 ratio in both sites. Addition of riverine-derived organic matter lowered the N2O : N2 ratio in the disconnected site, whereas addition of floodplain-derived organic matter increased the N2O : N2 ratio in the restored site. These results demonstrate that increasing floodplains hydrological connection to the main river channel increases nitrogen retention and decreases nitrous oxide emissions.

Analysis of Microbial Communities in Biofilms from CSTR-Type Hollow Fiber Membrane Biofilm Reactors for Autotrophic Nitrification and Hydrogenotrophic Denitrification.

PubMed

Shin, Jung-Hun; Kim, Byung-Chun; Choi, Okkyoung; Kim, Hyunook; Sang, Byoung-In

2015-10-01

Two hollow fiber membrane biofilm reactors (HF-MBfRs) were operated for autotrophic nitrification and hydrogenotrophic denitrification for over 300 days. Oxygen and hydrogen were supplied through the hollow fiber membrane for nitrification and denitrification, respectively. During the period, the nitrogen was removed with the efficiency of 82-97% for ammonium and 87-97% for nitrate and with the nitrogen removal load of 0.09-0.26 kg NH4(+)-N/m(3)/d and 0.10-0.21 kg NO3(-)-N/m(3)/d, depending on hydraulic retention time variation by the two HF-MBfRs for autotrophic nitrification and hydrogenotrophic denitrification, respectively. Biofilms were collected from diverse topological positions in the reactors, each at different nitrogen loading rates, and the microbial communities were analyzed with partial 16S rRNA gene sequences in denaturing gradient gel electrophoresis (DGGE). Detected DGGE band sequences in the reactors were correlated with nitrification or denitrification. The profile of the DGGE bands depended on the NH4(+) or NO3(-) loading rate, but it was hard to find a major strain affecting the nitrogen removal efficiency. Nitrospira-related phylum was detected in all biofilm samples from the nitrification reactors. Paracoccus sp. and Aquaspirillum sp., which are an autohydrogenotrophic bacterium and an oligotrophic denitrifier, respectively, were observed in the denitrification reactors. The distribution of microbial communities was relatively stable at different nitrogen loading rates, and DGGE analysis based on 16S rRNA (341f /534r) could successfully detect nitrate-oxidizing and hydrogen-oxidizing bacteria but not ammonium-oxidizing bacteria in the HF-MBfRs.

Community structures and activity of denitrifying microbes in a forested catchment in central Japan: survey using nitrite reductase genes

NASA Astrophysics Data System (ADS)

Ohte, N.; Aoki, M.; Katsuyama, C.; Suwa, Y.; Tange, T.

2012-12-01

To elucidate the mechanisms of denitrification processes in the forested catchment, microbial ecological approaches have been applied in an experimental watershed that has previously investigated its hydrological processes. The study catchment is located in the Chiba prefecture in central Japan under the temperate Asian monsoon climate. Potential activities of denitrification of soil samples were measured by incubation experiments under anoxic condition associated with Na15NO3 addition. Existence and variety of microbes having nitrite reductase genes were investigated by PCR amplification, cloning and sequencings of nirK and nirS fragments after DNA extraction. Contrary to our early expectation that the potential denitrification activity was higher at deeper soil horizon with consistent groundwater residence than that in the surface soil, denitrification potential was higher in shallower soil horizons than deeper soils. This suggested that the deficiency of NO3- as a respiratory substrate for denitrifier occurred in deeper soils especially in the summer. However, high denitrification activity and presence of microbes having nirK and nirS in surface soils usually under aerobic condition was explainable by the fact that the majority of denitrifying bacteria have been recognized as a facultative anaerobic bacterium. This also suggests the possibility of that denitrification occurs even in the surface soils if the wet condition is provided by rainwater during and after a storm event. Community structures of microbes having nirK were different between near surface and deeper soil horizons, and ones having nirS was different between saturated zone (under groundwater table) and unsaturated soil horizons. These imply that microbial communities with nisK are sensitive to the concentration of soil organic matters and ones with nirS is sensitive to soil moisture contents.

Nitrogen and carbon flow from rock to water: Regulation through soil biogeochemical processes, Mokelumne River watershed, California, and Grand Valley, Colorado

USGS Publications Warehouse

Holloway, J.M.; Smith, R.L.

2005-01-01

Soil denitrification is an ecologically important nitrogen removal mechanism that releases to the atmosphere the greenhouse gas N2O, an intermediate product from the reduction of NO3- to N 2. In this study we evaluate the relationship between soil carbon and denitrification potential in watersheds with bedrock acting as a nonpoint source of nitrogen, testing the hypothesis that nitrate leaching to stream water is in part regulated by denitrification. Two sites, one in a Mediterranean climate and the other in an arid climate, were investigated to understand the interplay between carbon and denitrification potential. Both sites included carbonaceous bedrock with relatively high nitrogen concentrations (> 1,000 mg N kg-1) and had low background nitrogen concentrations in surface and groundwater. There was a net accumulation of carbon and nitrogen in soil relative to the corresponding bedrock, with the exception of carbonaceous shale from the arid site. There the concentration of carbon in the soil (15,620 mg C kg-1) was less than the shale parent (22,460 mg C kg-1), consistent with the bedrock being a source of soil carbon. Rates of denitrification potential (0.5-83 ??g N kg-1 hr-1) derived from laboratory incubations appeared to be related to the ratio of dissolved organic carbon and nitrate extracted from soils. These data indicate that microbial processes such as denitrification can help maintain background nitrogen concentrations to tens of ??M N in relatively undisturbed ecosystems when nitrogen inputs from weathering bedrock are accompanied by sufficient organic carbon concentrations to promote microbial nitrogen transformations.

Denitrification gene expression in clay-soil bacterial community

NASA Astrophysics Data System (ADS)

Pastorelli, R.; Landi, S.

2009-04-01

Our contribution in the Italian research project SOILSINK was focused on microbial denitrification gene expression in Mediterranean agricultural soils. In ecosystems with high inputs of nitrogen, such as agricultural soils, denitrification causes a net loss of nitrogen since nitrate is reduced to gaseous forms, which are released into the atmosphere. Moreover, incomplete denitrification can lead to emission of nitrous oxide, a potent greenhouse gas which contributes to global warming and destruction of ozone layer. A critical role in denitrification is played by microorganisms and the ability to denitrify is widespread among a variety of phylogenetically unrelated organisms. Data reported here are referred to wheat cultivation in a clay-rich soil under different environmental impact management (Agugliano, AN, Italy). We analysed the RNA directly extracted from soil to provide information on in situ activities of specific populations. The expression of genes coding for two nitrate reductases (narG and napA), two nitrite reductases (nirS and nirK), two nitric oxide reductases (cnorB and qnorB) and nitrous oxide reductase (nosZ) was analyzed by reverse transcription (RT)-nested PCR. Only napA, nirS, nirK, qnorB and nosZ were detected and fragments sequenced showed high similarity with the corresponding gene sequences deposited in GenBank database. These results suggest the suitability of the method for the qualitative detection of denitrifying bacteria in environmental samples and they offered us the possibility to perform the denaturing gradient gel electrophoresis (DGGE) analyzes for denitrification genes.. Earlier conclusions showed nirK gene is more widely distributed in soil environment than nirS gene. The results concerning the nosZ expression indicated that microbial activity was clearly present only in no-tilled and no-fertilized soils.

Municipal wastewater treatment by biofiltration: comparisons of various treatment layouts. Part 1: assessment of carbon and nitrogen removal.

PubMed

Rocher, Vincent; Paffoni, Catherine; Gonçalves, Alexandre; Guérin, Sabrina; Azimi, Sam; Gasperi, Johnny; Moilleron, Régis; Pauss, André

2012-01-01

One of the largest wastewater treatment plants in the Paris conurbation (240,000 m(3)/d) has been studied over several years in order to provide technical and economical information about biological treatment by biofiltration. Biofiltration systems are processes in which carbon and nitrogen pollution of wastewater are treated by ascendant flow through immersed fixed cultures. This paper, focused on technical information, aims: (1) to compare performances of the three biological treatment layouts currently used in biofiltration systems: upstream denitrification (UD), downstream denitrification (DD) and combined upstream-downstream denitrification (U-DD) layouts; and (2) to describe in detail each treatment step. Our study has shown that more than 90% of the carbon and ammoniacal pollution is removed during biological treatment, whatever the layout used. Nitrate, produced during nitrification, is then reduced to atmospheric nitrogen. This reduction is more extensive when the denitrification stage occurs downstream from the treatment (DD layout with methanol addition), whereas it is only partial when it is inserted upstream from the treatment (UD layout - use of endogenous carbonaceous substrate). So, the UD layout leads to a nitrate concentration that exceeds the regulatory threshold in the effluent, and the treatment must be supplemented with a post-denitrification step (U-DD layout). Our work has also shown that the optimal ammonium-loading rate is about 1.1-1.2 kg N-NH(4)(+) per m(3) media (polystyrene) and day. For denitrification, the optimal nitrate-loading rate is about 2.5 kg N per m(3) media (expanded clay) and day in the case of DD with methanol, and is about 0.25 kg N-NO(3)(-) per m(3) media and day in the case of UD with exogenous carbonaceous substrate.

Dissimilatory nitrate reduction processes in sediments of urban river networks: Spatiotemporal variations and environmental implications.

PubMed

Cheng, Lv; Li, Xiaofei; Lin, Xianbiao; Hou, Lijun; Liu, Min; Li, Ye; Liu, Sai; Hu, Xiaoting

2016-12-01

Urbanizations have increased the loadings of reactive nitrogen in urban riverine environments. However, limited information about dissimilatory nitrate reduction processes and associated contributions to nitrogen removal is available for urban riverine environments. In this study, sediment slurry experiments were conducted with nitrogen isotope-tracing technique to investigate the potential rates of denitrification, anaerobic ammonium oxidation (anammox) and dissimilatory nitrate reduction to ammonium (DNRA) and their contributions to nitrate reduction in sediments of urban river networks, Shanghai. The potential rates of denitrification, anammox and DNRA measured in the study area ranged from 0.193 to 98.7 nmol N g -1  h -1 dry weight (dw), 0.0387-23.7 nmol N g -1  h -1  dw and 0-10.3 nmol N g -1  h -1  dw, respectively. Denitrification and DNRA rates were higher in summer than in winter, while anammox rates were greater in winter than in summer for most sites. Dissolved oxygen, total organic carbon, nitrate, ammonium, sulfide, Fe(II) and Fe(III) were found to have significant influence on these nitrate reduction processes. Denitrification contributed 11.5-99.5%% to total nitrate reduction, as compared to 0.343-81.6% for anammox and 0-52.3% for DNRA. It is estimated that nitrogen loss of approximately 1.33 × 10 5  t N year -1 was linked to both denitrification and anammox processes, which accounted for about 20.1% of total inorganic nitrogen transported annually into the urban river networks of Shanghai. Overall, these results show the potential importance of denitrification and anammox in nitrogen removal and provide new insight into the mechanisms of nitrogen cycles in urban riverine environments. Copyright © 2016 Elsevier Ltd. All rights reserved.

Assessing denitrification in groundwater using natural gradient tracer tests with 15N: In situ measurement of a sequential multistep reaction

USGS Publications Warehouse

Smith, Richard L.; Böhlke, John Karl; Garabedian, Stephen P.; Revesz, Kinga M.; Yoshinari, Tadashi

2004-01-01

Denitrification was measured within a nitrate‐contaminated aquifer on Cape Cod, Massachusetts, using natural gradient tracer tests with 15N nitrate. The aquifer contained zones of relatively high concentrations of nitrite (up to 77 μM) and nitrous oxide (up to 143 μM) and has been the site of previous studies examining ground water denitrification using the acetylene block technique. Small‐scale (15–24 m travel distance) tracer tests were conducted by injecting 15N nitrate and bromide as tracers into a depth interval that contained nitrate, nitrite, nitrous oxide, and excess nitrogen gas. The timing of the bromide breakthrough curves at down‐gradient wells matched peaks in 15N abundance above background for nitrate, nitrite, nitrous oxide, and nitrogen gas after more than 40 days of travel. Results were simulated with a one‐dimensional transport model using linked reaction kinetics for the individual steps of the denitrification reaction pathway. It was necessary to include within the model spatial variations in background concentrations of all nitrogen oxide species. The model indicated that nitrite production (0.036–0.047 μmol N (L aquifer)−1 d−1) was faster than the subsequent denitrification steps (0.013–0.016 μmol N (L aquifer)−1 d−1 for nitrous oxide and 0.013–0.020 μmol N (L aquifer)−1 d−1 for nitrogen gas) and that the total rate of reaction was slower than indicated by both acetylene block tracer tests and laboratory incubations. The rate of nitrate removal by denitrification was much slower than the rate of transport, indicating that nitrate would migrate several kilometers down‐gradient before being completely consumed.

O2 reduction and denitrification rates in shallow aquifers

NASA Astrophysics Data System (ADS)

Tesoriero, Anthony J.; Puckett, Larry J.

2011-12-01

O2 reduction and denitrification rates were determined in shallow aquifers of 12 study areas representing a wide range in sedimentary environments and climatic conditions. Zero- and first-order rates were determined by relating reactant or product concentrations to apparent groundwater age. O2 reduction rates varied widely within and between sites, with zero-order rates ranging from <3 μmol L-1 yr-1 to more than 140 μmol L-1 yr-1 and first-order rates ranging from 0.02 to 0.27 yr-1. Moderate denitrification rates (10-100 μmol N L-1 yr-1; 0.06-0.30 yr-1) were observed in most areas with O2 concentrations below 60 μmol L-1, while higher rates (>100 μmol N L-1 yr-1; >0.36 yr-1) occur when changes in lithology result in a sharp increase in the supply of electron donors. Denitrification lag times (i.e., groundwater travel times prior to the onset of denitrification) ranged from <20 yr to >80 yr. The availability of electron donors is indicated as the primary factor affecting O2 reduction rates. Concentrations of dissolved organic carbon (DOC) and/or sulfate (an indicator of sulfide oxidation) were positively correlated with groundwater age at sites with high O2 reduction rates and negatively correlated at sites with lower rates. Furthermore, electron donors from recharging DOC are not sufficient to account for appreciable O2 and nitrate reduction. These relations suggest that lithologic sources of DOC and sulfides are important sources of electrons at these sites but surface-derived sources of DOC are not. A review of published rates suggests that denitrification tends to occur more quickly when linked with sulfide oxidation than with carbon oxidation.

Effects of specific inhibitors on anammox and denitrification in marine sediments.

PubMed

Jensen, Marlene Mark; Thamdrup, Bo; Dalsgaard, Tage

2007-05-01

The effects of three metabolic inhibitors (acetylene, methanol, and allylthiourea [ATU]) on the pathways of N2 production were investigated by using short anoxic incubations of marine sediment with a 15N isotope technique. Acetylene inhibited ammonium oxidation through the anammox pathway as the oxidation rate decreased exponentially with increasing acetylene concentration; the rate decay constant was 0.10+/-0.02 microM-1, and there was 95% inhibition at approximately 30 microM. Nitrous oxide reduction, the final step of denitrification, was not sensitive to acetylene concentrations below 10 microM. However, nitrous oxide reduction was inhibited by higher concentrations, and the sensitivity was approximately one-half the sensitivity of anammox (decay constant, 0.049+/-0.004 microM-1; 95% inhibition at approximately 70 microM). Methanol specifically inhibited anammox with a decay constant of 0.79+/-0.12 mM-1, and thus 3 to 4 mM methanol was required for nearly complete inhibition. This level of methanol stimulated denitrification by approximately 50%. ATU did not have marked effects on the rates of anammox and denitrification. The profile of inhibitor effects on anammox agreed with the results of studies of the process in wastewater bioreactors, which confirmed the similarity between the anammox bacteria in bioreactors and natural environments. Acetylene and methanol can be used to separate anammox and denitrification, but the effects of these compounds on nitrification limits their use in studies of these processes in systems where nitrification is an important source of nitrate. The observed differential effects of acetylene and methanol on anammox and denitrification support our current understanding of the two main pathways of N2 production in marine sediments and the use of 15N isotope methods for their quantification.

Co-occurring anammox, denitrification, and codenitrification in agricultural soils.

PubMed

Long, Andrew; Heitman, Joshua; Tobias, Craig; Philips, Rebecca; Song, Bongkeun

2013-01-01

Anammox and denitrification mediated by bacteria are known to be the major microbial processes converting fixed N to N(2) gas in various ecosystems. Codenitrification and denitrification by fungi are additional pathways producing N(2) in soils. However, fungal codenitrification and denitrification have not been well investigated in agricultural soils. To evaluate bacterial and fungal processes contributing to N(2) production, molecular and (15)N isotope analyses were conducted with soil samples collected at six different agricultural fields in the United States. Denitrifying and anammox bacterial abundances were measured based on quantitative PCR (qPCR) of nitrous oxide reductase (nosZ) and hydrazine oxidase (hzo) genes, respectively, while the internal transcribed spacer (ITS) of Fusarium oxysporum was quantified to estimate the abundance of codenitrifying and denitrifying fungi. (15)N tracer incubation experiments with (15)NO(3)(-) or (15)NH(4)(+) addition were conducted to measure the N(2) production rates from anammox, denitrification, and codenitrification. Soil incubation experiments with antibiotic treatments were also used to differentiate between fungal and bacterial N(2) production rates in soil samples. Denitrifying bacteria were found to be the most abundant, followed by F. oxysporum based on the qPCR assays. The potential denitrification rates by bacteria and fungi ranged from 4.118 to 42.121 nmol N(2)-N g(-1) day(-1), while the combined potential rates of anammox and codenitrification ranged from 2.796 to 147.711 nmol N(2)-N g(-1) day(-1). Soil incubation experiments with antibiotics indicated that fungal codenitrification was the primary process contributing to N(2) production in the North Carolina soil. This study clearly demonstrates the importance of fungal processes in the agricultural N cycle.

O 2 reduction and denitrification rates in shallow aquifers

USGS Publications Warehouse

Tesoriero, A.J.; Puckett, L.J.

2011-01-01

O 2 reduction and denitrification rates were determined in shallow aquifers of 12 study areas representing a wide range in sedimentary environments and climatic conditions. Zero-and first-order rates were determined by relating reactant or product concentrations to apparent groundwater age. O 2 reduction rates varied widely within and between sites, with zero-order rates ranging from <3 ??mol L -1 yr -1 to more than 140 ??mol L -1 yr -1 and first-order rates ranging from 0.02 to 0.27 yr -1. Moderate denitrification rates (10-100 ??mol N L -1 yr -1; 0.06-0.30 yr -1) were observed in most areas with O 2 concentrations below 60 mol L -1, while higher rates (>100 mol N L -1 yr -1; >0.36 yr -1) occur when changes in lithology result in a sharp increase in the supply of electron donors. Denitrification lag times (i.e., groundwater travel times prior to the onset of denitrification) ranged from <20 yr to >80 yr. The availability of electron donors is indicated as the primary factor affecting O 2 reduction rates. Concentrations of dissolved organic carbon (DOC) and/or sulfate (an indicator of sulfide oxidation) were positively correlated with groundwater age at sites with high O 2 reduction rates and negatively correlated at sites with lower rates. Furthermore, electron donors from recharging DOC are not sufficient to account for appreciable O 2 and nitrate reduction. These relations suggest that lithologic sources of DOC and sulfides are important sources of electrons at these sites but surface-derived sources of DOC are not. A review of published rates suggests that denitrification tends to occur more quickly when linked with sulfide oxidation than with carbon oxidation. copyright 2011 by the American Geophysical Union.

Denitrification in nitrate-contaminated groundwater: Occurrence in steep vertical geochemical gradients

USGS Publications Warehouse

Smith, R.L.; Howes, B.L.; Duff, J.H.

1991-01-01

A relatively narrow vertical zone (5-6 m thick) of NO3- containing groundwater was identified using multilevel sampling devices in a sand and gravel aquifer on Cape Cod, MA, USA. The aquifer has been chronically contaminated by surface disposal of treated sewage 0.3 km upgradient from the study area. The NO3- zone was anoxic and contained high concentrations of N2O (16.5 ??M), suggesting that it was a zone of active denitrification. Denitrifying activity was confirmed with direct measurement using acetylene block incubations with aquifer core material; the peak rate was 2.4 nmol N reduced (g sed)-1 day-1. Concentrations of dissolved inorganic carbon and N2 were close to atmospheric equilibrium in uncontaminated groundwater, but were more than 2 times higher within the contaminant plume. Excess CO2 and N2 suggested in situ formation with a stoichiometry of C and N mineralized via denitrification of 0.8 (C/N). Denitrification within the aquifer resulted in an increase in the natural ??15N of NO3- (from +13.6 to +42.0%.) and the N2 produced, with an isotopic enrichment factor, ??{lunate}, of -13.9%.. Vertical profiles of NH4+ and ??15N of NH4+ indicated that dissimilatory reduction of NO3- to NH4+ was also occurring but mass balance calculations indicated that denitrification was the predominant process. These results demonstrate that a combination approach using field mass balance, stable isotope analysis, and laboratory incubations yields useful insight as to the significance of denitrification in aquifer sediments and that closely spaced vertical sampling is necessary to adequately quantify the processes controlling C and N transport and transformation within these environments. ?? 1991.

Enhanced Denitrification in Roadside Ditches with Bioreactors

NASA Astrophysics Data System (ADS)

Pluer, W.; Schneider, R.; Walter, M. T.

2016-12-01

Nitrate (NO3) pollution remains a water quality problem in agriculture-dominated watersheds despite decades of research and concerted efforts. Excess NO3 causes eutrophication in estuarine and marine ecosystems far downstream of the pollution source. Denitrification reduces NO3 to inert dinitrogen gas; this process occurs naturally in saturated areas of the landscape but this rate cannot keep up with the runoff rate due to fertilizer and manure applications. Researchers developed denitrifying bioreactors as a solution to encourage denitrification at the field level. Denitrifying bioreactors remove NO3 at a significantly higher rate (>2 g N m-2 d-1) than natural systems such as wetlands (<0.5 g N m-2 d-1). Most current designs of denitrifying bioreactors necessitate connection with tile drainage as the inflow source of water and NO3. It also requires a portion of farmland (typically <1% of field area is needed) which farmers can be reluctant to relinquish. Meanwhile, road ditches commonly run along agricultural fields, channeling runoff and NO3 to surface water. Because the ditches are designed to avoid flooding, they channel water rapidly and minimize time and contact with soil microbes for denitrification (denitrification rates in ditches are typically <0.1 g N m-2 d-1). Modified denitrifying bioreactors placed in road ditches could provide high NO3 removal in already marginal land, especially at baseflow conditions. A pilot study of this shows instantaneous NO3 removal rates up to 110 g N m-2 d-1 in the first year. Continued results similar to this pilot study and wider application could significantly increase ditch denitrification and help mitigate NO3 pollution.

Nutrient and carbon availability influences on denitrification in the regulated Lower Colorado River, Austin

NASA Astrophysics Data System (ADS)

Spector, J.

2016-12-01

The Lower Colorado River in Austin, Texas receives nitrogen-rich runoff and treated wastewater effluent and is subject to periodic water releases from the Longhorn Dam, which cause fluctuations in groundwater stage downstream. This research examined groundwater denitrification at the Hornsby Bend riparian area (located approximately 24 km downstream of downtown Austin) and characterized how dam-induced hyporheic exchange affects denitrification rates. Conductivity, temperature, water level, and dissolved oxygen concentrations were measured continuously throughout flood pulses for six months using dataloggers installed in a transect of seven monitoring wells on the river bank. Hourly samples were collected using an autosampler in one monitoring well (MW-5) during various flood conditions during the six month monitoring period. Water samples were analyzed for total organic carbon, total nitrogen, anions (NO3- and NO2-), NH4+ concentrations, alkalinity, and specific ultraviolet absorbance (SUVA) to characterize dissolved organic matter. Following large flood events (up to 4 m of water level stage increase), average conductivity increased 300 µs/centimeter in MW-5 as the water level receded. Analysis of water samples indicated that NO3- reduction occurred as conductivity and alkalinity increased. In addition, NH4+ concentrations increased during high conductivity periods. Increased denitrification activity corresponded with high SUVA. High conductivity and alkalinity increase the availability of electron donors (HCO3- and CO32-) and enhances denitrification potential. Higher SUVA values indicate increased dissolved organic carbon aromaticity and corresponding NO3- reduction. Additionally, changes in dissolved organic matter lability indicate the residence times of possible reactive organic carbon in the riparian area. This study has implications for determining advantageous geochemical conditions for hyporheic zone denitrification following large flood events.

Sediment nitrification and denitrification rates in a Lake Superior estuary

EPA Science Inventory

Microbially-mediated nitrogen (N) cycling in aquatic sediments has been recognized as an ecosystem service due to mitigation of N-transport to receiving waters. In 2011 and 2012, we compared nitrification (NIT), unamended (DeNIT) and amended (DEA) denitrification rates among spat...

Denitrification Potential, Root Biomass and Organic Matter in Degraded and Restored Urban Riparian Zones

EPA Science Inventory

Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitroge...

Denitrification Potential, Root Biomass, and Organic Matter in Degraded and Restored Urban Riparian Zones

EPA Science Inventory

Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitrogen...

Spatial variability in denitrification rates in an Oregon tidal salt marsh

EPA Science Inventory

Modeling denitrification (DeN) is particularly challenging in tidal systems, which play a vital role in buffering adjacent coastal waters from nitrogen inputs. These systems are hydrologically and biogeochemically complex, varying on fine temporal and spatial scales. As part of a...

Directly measured denitrification reveals oyster aquaculture and restored oyster reefs remove nitrogen at comparable high rates

EPA Science Inventory

Coastal systems are increasingly impacted by over-enrichment of nutrients, which has cascading effects for ecosystem functioning. Oyster restoration and aquaculture are both hypothesized to mitigate excessive nitrogen (N) loads via benthic denitrification (DNF). However, this has...

Labile dissolved organic carbon supply limits hyporheic denitrification

Treesearch

Jay P. Zarnetske; Roy Haggerty; Steven M. Wondzell; Michelle A. Baker

2012-01-01

We used an in situ steady state 15N-labeled nitrate and acetate well-to-wells injection experiment to determine how the availability of labile dissolved organic carbon as acetate influences microbial denitrification in the hyporheic zone of an upland (third-order) agricultural stream.

Effect of solids retention time on the bioavailability of organic carbon in anaerobically digested swine waste.

PubMed

Kinyua, Maureen N; Cunningham, Jeffrey; Ergas, Sarina J

2014-06-01

Anaerobic digestion (AD) can be used to stabilize and produce energy from livestock waste; however, digester effluents may require further treatment to remove nitrogen. This paper quantifies the effects of varying solids retention time (SRT) methane yield, volatile solids (VS) reduction and organic carbon bioavailability for denitrification during swine waste AD. Four bench-scale anaerobic digesters, with SRTs of 14, 21, 28 and 42 days, operated with swine waste feed. Effluent organic carbon bioavailability was measured using anoxic microcosms and respirometry. Excellent performance was observed for all four digesters, with >60% VS removal and CH4 yields between 0.1 and 0.3(m(3)CH4)/(kg VS added). Organic carbon in the centrate as an internal organic carbon source for denitrification supported maximum specific denitrification rates between 47 and 56(mg NO3(-)-N)/(g VSS h). The digester with the 21-day SRT had the highest CH4 yield and maximum specific denitrification rates. Copyright © 2014 Elsevier Ltd. All rights reserved.

[Contribution of fungi to soil nitrous oxide emission and their research methods: a review].

PubMed

Huang, Ying; Long, Xi-En

2014-04-01

Nitrous oxide is an important greenhouse gas. Soil is one major emission source of N2O, which is a by-product of microorganisms-driven nitrification and denitrification processes. Extensive research has demonstrated archaea and bacteria are the predominant contributors in nitrification and denitrification. However, fungi may play a predominant role in the N transformation in a certain soil ecosystem. The fungal contribution to N2O production has been rarely investigated. Here, we reviewed the mechanism of N2O production by soil fungi. The mechanisms of denitrification, autotrophic and heterotrophic nitrification and their key microbes and functional genes were described, respectively. We discriminated the differences in denitrification between bacteria and fungi and discussed the methods being used to determine the contribution of fungi to soil N2O emission, including selective inhibitors, 15N stable isotope probing, isolation and pure culturing and uncultured molecular detection methods. The existing problems and research prospects were also presented.

Sulfur-based autotrophic denitrification from the micro-polluted water.

PubMed

Zhou, Weili; Liu, Xu; Dong, Xiaojing; Wang, Zheng; Yuan, Ying; Wang, Hui; He, Shengbing

2016-06-01

Eutrophication caused by high concentrations of nutrients is a huge problem for many natural lakes and reservoirs. Removing the nitrogen contamination from the low C/N water body has become an urgent need. Autotrophic denitrification with the sulfur compound as electron donor was investigated in the biofilter reactors. Through the lab-scale experiment, it was found that different sulfur compounds and different carriers caused very different treatment performances. Thiosulfate was selected to be the best electron donor and ceramsite was chosen as the suitable carrier due to the good denitrification efficiency, low cost and the good resistibility against the high hydraulic loads. Later the optimum running parameters of the process were determined. Then the pilot-scale experiment was carried out with the real micro-polluted water from the West Lake, China. The results indicated that the autotrophic denitrification with thiosulfate as electron donor was feasible and applicable for the micro-polluted lake water. Copyright © 2016. Published by Elsevier B.V.

Selective enhancement and verification of woody biomass digestibility as a denitrification carbon source.

PubMed

Hu, Rongting; Zheng, Xilai; Xin, Jia; Sun, Zhaoyue; Zheng, Tianyuan

2017-11-01

The denitrification efficiency of woody biomass as carbon source is low because of its poor carbon availability. In this study, representative poplar sawdust was pretreated with lime and peracetic acid to enhance the biomass digestibility to different degrees; sawdust was then mixed with soil to investigate its denitrification efficiency. Under controllable conditions (25-95°C, 12-24h, varying dosages), sawdust digestibility (characterized by reducing sugar yield) was selectively enhanced 1.0-21.8 times over that of the raw sawdust (28.8mgeq.glucoseg -1 dry biomass). This increase was mainly attributed to the removal of lignin from the biomass. As a carbon source, the sawdust (digestibility enhanced by 5.4 times) increased the nitrate removal rate by 4.7 times, without N 2 O emission. However, the sawdust with high digestibility (12.6 or 18.0 times), despite releasing more dissolved organic carbon (DOC), did not exhibit further increase in denitrification efficiency, and emitted N 2 O. Copyright © 2017 Elsevier Ltd. All rights reserved.

Groundwater nitrate remediation using plant-chip bioreactors under phosphorus-limited environment

NASA Astrophysics Data System (ADS)

Satake, Shunichi; Tang, Changyuan

2018-02-01

Groundwater denitrification bioreactors under limited phosphorus conditions were studied in column experiments using four types of plant-chips. When the phosphate-P concentration in the influent increased from 0.04 mg/L to 0.4 mg/L, the nitrate removal ratio increased from 61.6% to 86.1% in reed, from 7.2% to 12.6% in Japanese cedar, from 37.0% to 73.6% in Moso bamboo, and from 19.2% to 50.5% in Lithocarpus edulis. The carbon source of the denitrifiers' growth was indicated by the content of acid detergent soluble organic matter in the chips. Furthermore, according to the modified Michaelis-Menten-type equation proposed in the study, the denitrification rate was largely limited by the phosphate-P concentration in reed and L. eduilis, and by the dissolved organic carbon (DOC) in Japanese cedar. Denitrification in Moso bamboo was affected by both phosphate-P and DOC. Besides the DOC, phosphorus emerged as an important limiting element of denitrification in some bioreactor plant-chips.

Biological removal of nitrate and ammonium under aerobic atmosphere by Paracoccus versutus LYM.

PubMed

Shi, Zhuang; Zhang, Yu; Zhou, Jiti; Chen, Mingxiang; Wang, Xiaojun

2013-11-01

The bacterium isolated from sea sludge Paracoccus versutus LYM was characterized with the ability of aerobic denitrification. Strain LYM performs perfect activity in aerobically converting over 95% NO3(-)-N (approximate 400mg L(-1)) to gaseous products via nitrite with maximum reduction rate 33 mg NO3(-)-N L(-1) h(-1). Besides characteristic of aerobic denitrification, strain LYM was confirmed in terms of the ability to be heterotrophic nitrification and aerobic denitrification (HNAD) with few accumulations of intermediates. After the nitrogen balance and enzyme assays, the putative nitrogen pathway of HNAD could be NH4(+) → NH2OH → NO2(-)→ NO3(-), then NO3(-) was denitrified to gaseous products via nitrite. N2 was sole denitrification product without any detection of N2O by gas chromatography. Strain LYM could also simultaneously remove ammonium and additional nitrate. Meanwhile, the accumulated nitrite had inhibitory effect on ammonium reduction rate. Copyright © 2013 Elsevier Ltd. All rights reserved.

Feasibility of two low-cost organic substrates for inducing denitrification in artificial recharge ponds: Batch and flow-through experiments

NASA Astrophysics Data System (ADS)

Grau-Martínez, Alba; Torrentó, Clara; Carrey, Raúl; Rodríguez-Escales, Paula; Domènech, Cristina; Ghiglieri, Giorgio; Soler, Albert; Otero, Neus

2017-03-01

Anaerobic batch and flow-through experiments were performed to assess the capacity of two organic substrates to promote denitrification of nitrate-contaminated groundwater within managed artificial recharge systems (MAR) in arid or semi-arid regions. Denitrification in MAR systems can be achieved through artificial recharge ponds coupled with a permeable reactive barrier in the form of a reactive organic layer. In arid or semi-arid regions, short-term efficient organic substrates are required due to the short recharge periods. We examined the effectiveness of two low-cost, easily available and easily handled organic substrates, commercial plant-based compost and crushed palm tree leaves, to determine the feasibility of using them in these systems. Chemical and multi-isotopic monitoring (δ15NNO3, δ18ONO3, δ34SSO4, δ18OSO4) of the laboratory experiments confirmed that both organic substrates induced denitrification. Complete nitrate removal was achieved in all the experiments with a slight transient nitrite accumulation. In the flow-through experiments, ammonium release was observed at the beginning of both experiments and lasted longer for the experiment with palm tree leaves. Isotopic characterisation of the released ammonium suggested ammonium leaching from both organic substrates at the beginning of the experiments and pointed to ammonium production by DNRA for the palm tree leaves experiment, which would only account for a maximum of 15% of the nitrate attenuation. Sulphate reduction was achieved in both column experiments. The amount of organic carbon consumed during denitrification and sulphate reduction was 0.8‰ of the total organic carbon present in commercial compost and 4.4% for the palm tree leaves. The N and O isotopic fractionation values obtained (εN and εO) were - 10.4‰ and - 9.0‰ for the commercial compost (combining data from both batch and column experiments), and - 9.9‰ and - 8.6‰ for the palm tree column, respectively. Both materials showed a satisfactory capacity for denitrification, but the palm tree leaves gave a higher denitrification rate and yield (amount of nitrate consumed per amount of available C) than commercial compost

Effect of Potassium Chlorate on the Treatment of Domestic Sewage by Achieving Shortcut Nitrification in a Constructed Rapid Infiltration System.

PubMed

Fang, Qinglin; Xu, Wenlai; Yan, Zhijiao; Qian, Lei

2018-04-04

A constructed rapid infiltration (CRI) system is a new type of sewage biofilm treatment technology, but due to its anaerobic zone it lacks the carbon sources and the conditions for nitrate retention, and its nitrogen removal performance is very poor. However, a shortcut nitrification–denitrification process presents distinctive advantages, as it saves oxygen, requires less organic matter, and requires less time for denitrification compared to conventional nitrogen removal methods. Thus, if the shortcut nitrification–denitrification process could be applied to the CRI system properly, a simpler, more economic, and efficient nitrogen removal method will be obtained. However, as its reaction process shows that the first and the most important step of achieving shortcut nitrification–denitrification is to achieve shortcut nitrification, in this study we explored the feasibility to achieve shortcut nitrification, which produces nitrite as the dominant nitrogen species in effluent, by the addition of potassium chlorate (KClO₃) to the influent. In an experimental CRI test system, the effects on nitrogen removal, nitrate inhibition, and nitrite accumulation were studied, and the advantages of achieving a shortcut nitrification–denitrification process were also analysed. The results showed that shortcut nitrification was successfully achieved and maintained in a CRI system by adding 5 mM KClO₃ to the influent at a constant pH of 8.4. Under these conditions, the nitrite accumulation percentage was increased, while a lower concentration of 3 mM KClO₃ had no obvious effect. The addition of 5mM KClO₃ in influent presumably inhibited the activity of ammonia-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria (NOB), but inhibition of nitrite-oxidizing bacteria (NOB) was so strong that it resulted in a maximum nitrite accumulation percentage of up to over 80%. As a result, nitrite became the dominant nitrogen product in the effluent. Moreover, if the shortcut denitrification process will be achieved in the subsequent research, it could save 60.27 mg CH₃OH per litre of sewage in the CRI system compared with the full denitrification process.

Isotopologue fractionation during N(2)O production by fungal denitrification.

PubMed

Sutka, Robin L; Adams, Gerard C; Ostrom, Nathaniel E; Ostrom, Peggy H

2008-12-01

Identifying the importance of fungi to nitrous oxide (N2O) production requires a non-intrusive method for differentiating between fungal and bacterial N2O production such as natural abundance stable isotopes. We compare the isotopologue composition of N2O produced during nitrite reduction by the fungal denitrifiers Fusarium oxysporum and Cylindrocarpon tonkinense with published data for N2O production during bacterial nitrification and denitrification. The fractionation factors for bulk nitrogen isotope values for fungal denitrification were in the range -74.7 to -6.6 per thousand. There was an inverse relationship between the absolute value of the fractionation factors and the reaction rate constant. We interpret this in terms of variation in the relative importance of the rate constants for diffusion and enzymatic reduction in controlling the net isotope effect for N2O production during fungal denitrification. Over the course of nitrite reduction, the delta(18)O values for N2O remained constant and did not exhibit a relationship with the concentration characteristic of an isotope effect. This probably reflects isotopic exchange with water. Similar to the delta(18)O data, the site preference (SP; the difference in delta(15)N between the central and outer N atoms in N2O) was unrelated to concentration during nitrite reduction and, therefore, has the potential to act as a conservative tracer of production from fungal denitrification. The SP values of N2O produced by F. oxysporum and C. tonkinense were 37.1 +/- 2.5 per thousand and 36.9 +/- 2.8 per thousand, respectively. These SP values are similar to those obtained in pure culture studies of bacterial nitrification but quite distinct from SP values for bacterial denitrification. The large magnitude of the bulk nitrogen isotope fractionation and the delta(18)O values associated with fungal denitrification are distinct from bacterial production pathways; thus multiple isotopologue data holds much promise for resolving bacterial and fungal production. Our work further provides insight into the role that fungal and bacterial nitric oxide reductases have in determining site preference during N2O production. Copyright 2008 John Wiley & Sons, Ltd.

Fact and Fiction of Nitrous Oxide Production By Nitrification

NASA Astrophysics Data System (ADS)

Stein, L. Y.; Kozlowski, J.; Stieglmeier, M.; Klotz, M. G.; Schleper, C.

2014-12-01

An accepted dogma in nitrification research is that ammonia-oxidizing bacteria (AOB) produce a modicum of nitrous oxide (N2O) during nitritation via incomplete oxidation of hydroxylamine, and substantially more at low oxygen concentrations via nitrifier denitrification.The nitrifier denitrification pathway involves the reduction of nitrite to N2O via nitric oxide and was thought to require activities of a copper-containing nitrite reductase (NirK) and nitric oxide reductase (NorB); inventory encoded in most, but not all AOB genome sequences. The discovery of nirK genes in ammonia-oxidizing Thaumarchaeota (AOA) resulted in a slew of publications stating that AOA must also perform nitrifier denitrification and, due to their high abundance, must control the majority of nitrification-linked N2O emissions. Prior to a publication by Stieglmeier et al. (2014), which definitively showed a lack of nitrifier denitrification by two axenic AOA cultures, other researchers relied on enrichment cultures, negative data, and heavy inferencing without direct demonstration of either a functional pathway or involvement of specific genes or enzymes. AOA genomes lack recognizable nitric oxide reductases and thermophilic AOA also lack nirK genes. Physiological and microrespirometry experiments with axenic AOB and AOA cultures allowed us to demonstrate that: 1) AOB produce N2O via nitrifier denitrification even though some lack annotated nirK and/or norB genes; 2) nitrifier denitrification by AOB is reliant on nitric oxide but ammonia oxidation is not; 3) ammonia oxidation by AOA is reliant on production of nitric oxide; 4) AOA are incapable of generating N2O via nitrifier denitrification; 5) N2O production by AOA is from chemical interactions between NO and media components, most likely not by enzyme activity. Our results reveal operation of different N oxide transformation pathways in AOB and AOA governed by different environmental controls and involving different mechanisms of N2O production. Critical controls on these mechanisms are levels of oxygen and ammonium. Future calculations of relative contributions of AOB and AOA to N2O emissions must take into account physiological, enzymatic, and environmental differences between these two nitrifying microorganisms.

Investigating controls on denitrification rates during managed aquifer recharge: Field studies of infiltration

NASA Astrophysics Data System (ADS)

Beganskas, S.; Gorski, G.; Fisher, A. T.; Weir, W. B.; Schmidt, C. M.; Saltikov, C.; Stoneburner, B.; Hernandez, J.; Harmon, R. E.; Weathers, T. S.

2016-12-01

We have designed field experiments to observe and quantify water quality improvement during infiltration in the shallow subsurface, as part of managed aquifer recharge (MAR). We are exploring how microbial diversity and denitrification rate respond to different infiltration rates and the presence or absence of carbon-rich reactive materials (woodchips or biochar). In 2015, we conducted a series of two-week-long field infiltration tests, and in 2016 we are running tests at a new site. For each test, nitrate-rich water (20-25 ppm NO3-N) was continuously applied to 1-m square plots instrumented to measure infiltration rates and sample subsurface water at multiple depths. Soil samples were collected before and after each test to assess microbial diversity. In 2015, we observed infiltration rates of 4-18 m/d, consistent with very sandy soils at our field site. All water samples had >20 ppm DOC, indicating that denitrification was unlikely carbon-limited. There was a net increase in DOC in fluids sampled below woodchips, but no change in DOC in samples from un-amended native soil. Up to 20% of NO3- was removed below woodchips on days with infiltration rates below 15 m/d. Nitrate removal was not observed in native soil, even though infiltration rates were considerably lower, 4 m/d. Isotopic analyses indicate that denitrification is likely the mechanism for nitrate removal. Genomic sequencing of soil microbes shows that microbial populations' relative abundance shifted significantly due to infiltration; further analyses are underway. Our results suggest that rapid infiltration can lead to oxic conditions unfavorable for denitrification, and that a carbon-rich reactive material (woodchips) may stimulate microbially-mediated denitrification. Our experimental design is a novel way to examine factors that impact water quality during infiltration. Nitrate, a pervasive groundwater contaminant, can be removed via denitrification during MAR under some conditions, depending on infiltration rate, available carbon, and substrate material. Our work has applications for designing MAR systems that effectively improve water supply and water quality.

Nitrification and denitrification in a midwestern stream containing high nitrate: In situ assessment using tracers in dome-shaped incubation chambers

USGS Publications Warehouse

Smith, R.L.; Böhlke, J.K.; Repert, D.A.; Hart, C.P.

2009-01-01

The extent to which in-stream processes alter or remove nutrient loads in agriculturally impacted streams is critically important to watershed function and the delivery of those loads to coastal waters. In this study, patch-scale rates of in-stream benthic processes were determined using large volume, open-bottom benthic incubation chambers in a nitrate-rich, first to third order stream draining an area dominated by tile-drained row-crop fields. The chambers were fitted with sampling/mixing ports, a volume compensation bladder, and porewater samplers. Incubations were conducted with added tracers (NaBr and either 15N[NO3-], 15N[NO2-], or 15N[NH4+]) for 24-44 h intervals and reaction rates were determined from changes in concentrations and isotopic compositions of nitrate, nitrite, ammonium and nitrogen gas. Overall, nitrate loss rates (220-3,560 ??mol N m-2 h-1) greatly exceeded corresponding denitrification rates (34-212 ??mol N m-2 h-1) and both of these rates were correlated with nitrate concentrations (90-1,330 ??M), which could be readily manipulated with addition experiments. Chamber estimates closely matched whole-stream rates of denitrification and nitrate loss using 15N. Chamber incubations with acetylene indicated that coupled nitrification/denitrification was not a major source of N2 production at ambient nitrate concentrations (175 ??M), but acetylene was not effective for assessing denitrification at higher nitrate concentrations (1,330 ??M). Ammonium uptake rates greatly exceeded nitrification rates, which were relatively low even with added ammonium (3.5 ??mol N m-2 h-1), though incubations with nitrite demonstrated that oxidation to nitrate exceeded reduction to nitrogen gas in the surface sediments by fivefold to tenfold. The chamber results confirmed earlier studies that denitrification was a substantial nitrate sink in this stream, but they also indicated that dissolved inorganic nitrogen (DIN) turnover rates greatly exceeded the rates of permanent nitrogen removal via denitrification. ?? Springer Science+Business Media B.V. 2009.

Seasonal differences in relationships between nitrate concentration and denitrification rates in ditch sediments vegetated with rice cutgrass (Leersia oryzoides)

USDA-ARS?s Scientific Manuscript database

Increased application of nitrogen (N) fertilizers in agricultural systems contributes to significant environmental impacts, including eutrophication of fresh and coastal waters. Rice cutgrass (Leersia oryzoides) can significantly enhance denitrification potential in agricultural ditch sediments and ...

A Simple Model of Nitrogen Concentration, Throughput, and Denitrification in Estuaries

EPA Science Inventory

The Estuary Nitrogen Model (ENM) is a mass balance model that includes calculation of nitrogen losses within bays and estuaries using system flushing time. The model has been used to demonstrate the dependence of throughput and denitrification of nitrogen in bays and estuaries on...

VARYING LANDSCAPE STRUCTURE AND POTENTIAL DENITRIFICATION ACTIVITY AMONG SALT MARSHES ALONG AN ANTHROPOGENIC DISTURBANCE GRADIENT

EPA Science Inventory

Marsh landscape structure and denitrification are proposed as indicators of key wetland services, providing animal habitat and water quality maintenance, respectively. We examined marsh landscape structure (i.e., plant species richness and extent of dominant plant species) and po...

Nitrate removal effectiveness of fluidized sulfur-based autotrophic denitrification biofilters for recirculating aquaculture systems

USDA-ARS?s Scientific Manuscript database

There is a need to develop practical methods to reduce nitrate -nitrogen loads from recirculating aqua-culture systems to facilitate increased food protein production simultaneously with attainment of water quality goals. The most common wastewater denitrification treatment systems utilize methanol-...

Fluidization velocity assessment of commercially available sulfur particles for use in autotrophic denitrification biofilters

USDA-ARS?s Scientific Manuscript database

There has been no evaluation of sulfur-based autotrophic denitrification using fluidized biofilters in a recirculating aquaculture system to mitigate nitrate-nitrogen loads. The objectives of this work were to quantify the particle size distribution, specific surface area, and fluidization velocitie...

Woody Debris: Denitrification Hotspots and N2O Production in Fluvial Systems

EPA Science Inventory

The maintenance and restoration of forested riparian cover is important for watershed nitrogen (N) cycling. Forested riparian zones provide woody debris to streams that may stimulate in-stream denitrification and control nitrous oxide (N2O) production. We examined the effects of ...

Woodchip denitrification bioreactors: Impact of temperature and hydraulic retention time on nitrate removal

USDA-ARS?s Scientific Manuscript database

Woodchip denitrification bioreactors, a relatively new technology for edge-of-field treatment of subsurface agricultural drainage water, have shown potential for nitrate removal. However, very few studies have evaluated the performance of these reactors under controlled conditions similar to the fie...

Measuring potential denitrification enzyme activity rates using the membrane inlet mass spectrometer

EPA Science Inventory

The denitrification enzyme activity (DEA) assay, provides a quantitative assessment of the multi enzyme, biological process of reactive nitrogen removal via the reduction of N03 to N2. Measured in soil, usually under non limiting carbon and nitrate concentrations, this short ter...

The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites.

PubMed

Guyonnet, Julien P; Vautrin, Florian; Meiffren, Guillaume; Labois, Clément; Cantarel, Amélie A M; Michalet, Serge; Comte, Gilles; Haichar, Feth El Zahar

2017-04-01

The aim of this study was to determine (i) whether plant nutritional strategy affects the composition of primary metabolites exuded into the rhizosphere and (ii) the impact of exuded metabolites on denitrification activity in soil. We answered this question by analysing primary metabolite content extracted from the root-adhering soil (RAS) and the roots of three grasses representing different nutrient management strategies: conservative (Festuca paniculata), intermediate (Bromus erectus) and exploitative (Dactylis glomerata). We also investigated the impact of primary metabolites on soil microbial denitrification enzyme activity without carbon addition, comparing for each plant RAS and bulk soils. Our data show that plant nutritional strategy impacts on primary metabolite composition of root extracts or RAS. Further we show, for the first time, that RAS-extracted primary metabolites are probably better indicators to explain plant nutrient strategy than root-extracted ones. In addition, our results show that some primary metabolites present in the RAS were well correlated with soil microbial denitrification activity with positive relationships found between denitrification and the presence of some organic acids and negative ones with the presence of xylose. We demonstrated that the analysis of primary metabolites extracted from the RAS is probably more pertinent to evaluate the impact of plant on soil microbial community functioning. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Stream denitrification across biomes and its response to anthropogenic nitrate loading

USGS Publications Warehouse

Mulholland, P.J.; Helton, A.M.; Poole, G.C.; Hall, R.O.; Hamilton, S.K.; Peterson, B.J.; Tank, J.L.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Dodds, W.K.; Findlay, S.E.G.; Gregory, S.V.; Grimm, N. B.; Johnson, S.L.; McDowell, W.H.; Meyer, J.L.; Valett, H.M.; Webster, J.R.; Arango, C.P.; Beaulieu, J.J.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Johnson, L.T.; Niederlehner, B.R.; O'Brien, J. M.; Potter, J.D.; Sheibley, R.W.; Sobota, D.J.; Thomas, S.M.

2008-01-01

Anthropogenic addition of bioavailable nitrogen to the biosphere is increasing and terrestrial ecosystems are becoming increasingly nitrogen-saturated, causing more bioavailable nitrogen to enter groundwater and surface waters. Large-scale nitrogen budgets show that an average of about 20-25 per cent of the nitrogen added to the biosphere is exported from rivers to the ocean or inland basins, indicating that substantial sinks for nitrogen must exist in the landscape. Streams and rivers may themselves be important sinks for bioavailable nitrogen owing to their hydrological connections with terrestrial systems, high rates of biological activity, and streambed sediment environments that favour microbial denitrification. Here we present data from nitrogen stable isotope tracer experiments across 72 streams and 8 regions representing several biomes. We show that total biotic uptake and denitrification of nitrate increase with stream nitrate concentration, but that the efficiency of biotic uptake and denitrification declines as concentration increases, reducing the proportion of in-stream nitrate that is removed from transport. Our data suggest that the total uptake of nitrate is related to ecosystem photosynthesis and that denitrification is related to ecosystem respiration. In addition, we use a stream network model to demonstrate that excess nitrate in streams elicits a disproportionate increase in the fraction of nitrate that is exported to receiving waters and reduces the relative role of small versus large streams as nitrate sinks. ??2008 Nature Publishing Group.

Hydrologic controls on nitrogen cycling processes and functional gene abundance in sediments of a groundwater flow-through lake

USGS Publications Warehouse

Stoliker, Deborah L.; Repert, Deborah A.; Smith, Richard L.; Song, Bongkeun; LeBlanc, Denis R.; McCobb, Timothy D.; Conaway, Christopher; Hyun, Sung Pil; Koh, Dong-Chan; Moon, Hee Sun; Kent, Douglas B.

2016-01-01

The fate and transport of inorganic nitrogen (N) is a critically important issue for human and aquatic ecosystem health because discharging N-contaminated groundwater can foul drinking water and cause algal blooms. Factors controlling N-processing were examined in sediments at three sites with contrasting hydrologic regimes at a lake on Cape Cod, MA. These factors included water chemistry, seepage rates and direction of groundwater flow, and the abundance and potential rates of activity of N-cycling microbial communities. Genes coding for denitrification, anaerobic ammonium oxidation (anammox), and nitrification were identified at all sites regardless of flow direction or groundwater dissolved oxygen concentrations. Flow direction was, however, a controlling factor in the potential for N-attenuation via denitrification in the sediments. Potential rates of denitrification varied from 6 to 4500 pmol N/g/h from the inflow to the outflow side of the lake, owing to fundamental differences in the supply of labile organic matter. The results of laboratory incubations suggested that when anoxia and limiting labile organic matter prevailed, the potential existed for concomitant anammox and denitrification. Where oxic lake water was downwelling, potential rates of nitrification at shallow depths were substantial (1640 pmol N/g/h). Rates of anammox, denitrification, and nitrification may be linked to rates of organic N-mineralization, serving to increase N-mobility and transport downgradient.

A Tire-Sulfur Hybrid Adsorption Denitrification (T-SHAD) process for decentralized wastewater treatment.

PubMed

Krayzelova, Lucie; Lynn, Thomas J; Banihani, Qais; Bartacek, Jan; Jenicek, Pavel; Ergas, Sarina J

2014-09-15

Nitrogen discharges from decentralized wastewater treatment (DWT) systems contribute to surface and groundwater contamination. However, the high variability in loading rates, long idle periods and lack of regular maintenance presents a challenge for biological nitrogen removal in DWT. A Tire-Sulfur Hybrid Adsorption Denitrification (T-SHAD) process was developed that combines nitrate (NO3(-)) adsorption to scrap tire chips with sulfur-oxidizing denitrification. This allows the tire chips to adsorb NO3(-) when the influent loading exceeds the denitrification capacity of the biofilm and release it when NO3(-) loading rates are low (e.g. at night). Three waste products, scrap tire chips, elemental sulfur pellets and crushed oyster shells, were used as a medium in adsorption, leaching, microcosm and up-flow packed bed bioreactor studies of NO3(-) removal from synthetic nitrified DWT wastewater. Adsorption isotherms showed that scrap tire chips have an adsorption capacity of 0.66 g NO3(-)-N kg(-1) of scrap tires. Leaching and microcosm studies showed that scrap tires leach bioavailable organic carbon that can support mixotrophic metabolism, resulting in lower effluent SO4(2-) concentrations than sulfur oxidizing denitrification alone. In column studies, the T-SHAD process achieved high NO3(-)-N removal efficiencies under steady state (90%), variable flow (89%) and variable concentration (94%) conditions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Mechanism of charged pollutants removal in an ion exchange membrane bioreactor: drinking water denitrification.

PubMed

Velizarov, S; Rodrigues, C M; Reis, M A; Crespo, J G

The mechanism of anionic pollutant removal in an ion exchange membrane bioreactor (IEMB) was studied for drinking water denitrification. This hybrid process combines continuous ion exchange transport (Donnan dialysis) of nitrate and its simultaneous bioreduction to gaseous nitrogen. A nonporous mono-anion permselective membrane precludes direct contact between the polluted water and the denitrifying culture and prevents secondary pollution of the treated water with dissolved nutrients and metabolic products. Complete denitrification may be achieved without accumulation of NO3(-) and NO2(-) ions in the biocompartment. Focus was given to the effect of the concentration of co-ions, counterions, and ethanol on the IEMB performance. The nitrate overall mass transfer coefficient in this hybrid process was found to be 2.8 times higher compared to that in a pure Donnan dialysis process without denitrification. Furthermore, by adjusting the ratio of co-ions between the biocompartment and the polluted water compartment, the magnitude and direction of each individual anion flux can be easily regulated, allowing for flexible process operation and control. Synthetic groundwater containing 135-350 mg NO3(-) L(-1) was treated in the IEMB system. A surface denitrification rate of 33 g NO3(-) per square meter of membrane per day was obtained at a nitrate loading rate of 360 g NO3(-) m(-3)d(-1), resulting in a nitrate removal efficiency of 85%.

Oxygen and nitrogen isotope effects duing nitrification and denitrification occuring in Midwesern soils

NASA Astrophysics Data System (ADS)

Michalski, G. M.; Wilkens, B.; Sanchez, A. V.; Yount, J.

2017-12-01

The processes of nitrification and denitrification are key steps in the biogeochemical cycling of N and are a main control on ecosystem productivity. These processes are ephemeral and often difficult to assess across wide spatial and temporal scales. Natural abundance stable isotopes are a way of potentially assessing these two processes across multiple scales. We have conducted incubation experiments to assess the N and O isotope effects occurring during denitrification in soils typical of the Midwestern United States. Nitrification was examined by incubating soils amended with ammonium (with a known δ15N) mixed with H2O and O2 that had different δ18O values and then measured the δ15N and δ18O of the product nitrate. The fraction of nitrate oxygen arising from H2O and O2 was determined along with the N and O kinetic isotope effect (KIE). For denitrification, nitrate with a known δ15N, δ17O, and δ18O, was incubated in anaerobic soils from 12-48 hours. The residual nitrate was analyzed for isotope change and the KIE for O and N as well as exchange with H2O was determined. These data can be useful for interpreting nitrate isotopes in agricultural fields as a way off assessing nitrification and denitrification is agricultural ecosystems such as the IML-CZO.

The effect of millennial-scale changes in Arabian Sea denitrification on atmospheric CO2.

PubMed

Altabet, Mark A; Higginson, Matthew J; Murray, David W

2002-01-10

Most global biogeochemical processes are known to respond to climate change, some of which have the capacity to produce feedbacks through the regulation of atmospheric greenhouse gases. Marine denitrification-the reduction of nitrate to gaseous nitrogen-is an important process in this regard, affecting greenhouse gas concentrations directly through the incidental production of nitrous oxide, and indirectly through modification of the marine nitrogen inventory and hence the biological pump for CO2. Although denitrification has been shown to vary with glacial-interglacial cycles, its response to more rapid climate change has not yet been well characterized. Here we present nitrogen isotope ratio, nitrogen content and chlorin abundance data from sediment cores with high accumulation rates on the Oman continental margin that reveal substantial millennial-scale variability in Arabian Sea denitrification and productivity during the last glacial period. The detailed correspondence of these changes with Dansgaard-Oeschger events recorded in Greenland ice cores indicates rapid, century-scale reorganization of the Arabian Sea ecosystem in response to climate excursions, mediated through the intensity of summer monsoonal upwelling. Considering the several-thousand-year residence time of fixed nitrogen in the ocean, the response of global marine productivity to changes in denitrification would have occurred at lower frequency and appears to be related to climatic and atmospheric CO2 oscillations observed in Antarctic ice cores between 20 and 60 kyr ago.

Denitrification in a Sand and Gravel Aquifer

PubMed Central

Smith, Richard L.; Duff, John H.

1988-01-01

Denitrification was assayed by the acetylene blockage technique in slurried core material obtained from a freshwater sand and gravel aquifer. The aquifer, which has been contaminated with treated sewage for more than 50 years, had a contaminant plume greater than 3.5-km long. Near the contaminant source, groundwater nitrate concentrations were greater than 1 mM, whereas 0.25 km downgradient the central portion of the contaminant plume was anoxic and contained no detectable nitrate. Samples were obtained along the longitudinal axis of the plume (0 to 0.25 km) at several depths from four sites. Denitrification was evident at in situ nitrate concentrations at all sites tested; rates ranged from 2.3 to 260 pmol of N2O produced (g of wet sediment)−1 h−1. Rates were highest nearest the contaminant source and decreased with increasing distance downgradient. Denitrification was the predominant nitrate-reducing activity; no evidence was found for nitrate reduction to ammonium at any site. Denitrifying activity was carbon limited and not nitrate limited, except when the ambient nitrate level was less than the detection limit, in which case, even when amended with high concentrations of glucose and nitrate, the capacity to denitrify on a short-term basis was lacking. These results demonstrate that denitrification can occur in groundwater systems and, thereby, serve as a mechanism for nitrate removal from groundwater. PMID:16347621

Effect of substrate availability on nitrous oxide production by deammonification processes under anoxic conditions.

PubMed

Schneider, Yvonne; Beier, Maike; Rosenwinkel, Karl-Heinz

2012-05-01

Due to its high global warming potential, nitrous oxide (N(2)O) emissions from wastewater treatment processes have recently received a high degree of attention. Nevertheless, there is still a lack of information regarding the microbiological processes leading to N(2)O production. In this study, two lab-scale sequencing batch reactors were operated with deammonification biomass to investigate the role of denitrification and the influence of substrate availability regarding N(2)O formation during the anoxic phase of deammonification. Three different operational phases were established: within the first phase conversion by anammox was favoured and after a transition phase, denitrification activity was promoted. Low nitrous oxide production was observed during stable operation aiming for anammox conversion. Pulsed inflow of the wastewater containing ammonium (NH(4)(+)) and nitrite (NO(2)(-)) led to increased N(2)O production rates. Within the period of denitrification as dominating nitrogen conversion process, the nitrous oxide concentration level was higher during continuous inflow conditions, but the reaction to pulsed inflow was less pronounced. The results indicated that denitrification was responsible for N(2)O formation from the deammonification biomass. Operational settings to achieve suppression of denitrification processes to a large extend were deducted from the results of the experiments. © 2012 The Authors. Microbial Biotechnology © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

Microbial nitrogen sinks in the water column of a large coastal hypoxic area, the Gulf of Mexico "Dead Zone"

NASA Astrophysics Data System (ADS)

Rogener, M. K.; Roberts, B. J.; Rabalais, N. N.; Stewart, F. J.; Joye, S. B.

2016-02-01

Excess nitrogen in coastal environments leads to eutrophication, harmful algal blooms, habitat loss, oxygen depletion and reductions in biodiversity. As such, biological nitrogen (N) removal through the microbially-mediated process of denitrification is a critical ecosystem function that can mitigate the negative consequences of excess nitrogen loading. However, denitrification can produce nitrous oxide, a potent greenhouse gas, as a byproduct under some environmental conditions. To understand how excess nitrogen loading impacts denitrification, we measured rates of this process in the water column of the Gulf of Mexico "Dead Zone" three times over the summer of 2015. The Dead Zone is generated by excessive nitrogen loading from the Mississippi River co-occurring with strong water column stratification, which leads to a large summer-time hypoxic/anoxic area at the mouth of the river and along the coast of Louisiana. Rates of denitrification ranged from 31 to 153 nmol L-1 d-1. Dead Zone waters are also enriched in methane and aerobic methane oxidation rates ranged from 0.1 to 4.3 nmol L-1 d-1. Maximal denitrification rates were observed at stations with the lowest oxygen concentrations and highest methane oxidation rates, suggesting a potential coupling between nitrate reduction and methane oxidation which both scrubs reactive N and methane from the system, thus performing a duel ecosystem service.

Hydrologic Controls on Nitrogen Cycling Processes and Functional Gene Abundance in Sediments of a Groundwater Flow-Through Lake.

PubMed

Stoliker, Deborah L; Repert, Deborah A; Smith, Richard L; Song, Bongkeun; LeBlanc, Denis R; McCobb, Timothy D; Conaway, Christopher H; Hyun, Sung Pil; Koh, Dong-Chan; Moon, Hee Sun; Kent, Douglas B

2016-04-05

The fate and transport of inorganic nitrogen (N) is a critically important issue for human and aquatic ecosystem health because discharging N-contaminated groundwater can foul drinking water and cause algal blooms. Factors controlling N-processing were examined in sediments at three sites with contrasting hydrologic regimes at a lake on Cape Cod, MA. These factors included water chemistry, seepage rates and direction of groundwater flow, and the abundance and potential rates of activity of N-cycling microbial communities. Genes coding for denitrification, anaerobic ammonium oxidation (anammox), and nitrification were identified at all sites regardless of flow direction or groundwater dissolved oxygen concentrations. Flow direction was, however, a controlling factor in the potential for N-attenuation via denitrification in the sediments. Potential rates of denitrification varied from 6 to 4500 pmol N/g/h from the inflow to the outflow side of the lake, owing to fundamental differences in the supply of labile organic matter. The results of laboratory incubations suggested that when anoxia and limiting labile organic matter prevailed, the potential existed for concomitant anammox and denitrification. Where oxic lake water was downwelling, potential rates of nitrification at shallow depths were substantial (1640 pmol N/g/h). Rates of anammox, denitrification, and nitrification may be linked to rates of organic N-mineralization, serving to increase N-mobility and transport downgradient.

Instream large wood: Denitrification hotspots with low N2O production

EPA Science Inventory

We examined the effect of instream large wood on denitrification capacity in two contrasting, lower order streams — one that drains an agricultural watershed with no riparian forest and minimal stores of instream large wood and another that drains a forested watershed with an ext...

Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application

USDA-ARS?s Scientific Manuscript database

DeNitrification DeComposition (DNDC) model predictions of NH3 fluxes following chemical fertilizer application were evaluated by comparison to relaxed eddy accumulation (REA) measurements, in Central Illinois, United States, over the 2014 growing season of corn. Practical issues for evaluating closu...

Modeling the Effects of Climate Change on Spatio-Temporal Dynamics of Denitrification in an Oregon Salt Marsh

EPA Science Inventory

The highest uncertainties in net nitrogen (N) fluxes between the atmosphere and biologically active pools are predominately due to denitrification (DeN). This diminishes confidence in our assessment of wetland N removal at transition zones between upland and aquatic systems. This...

Understanding the Spatio-Temporal Dynamics of Denitrification in an Oregon Salt Marsh

EPA Science Inventory

Salt marshes are highly susceptible to a range of climate change effects (e.g., sea-level rise, salinity changes, storm severity, shifts in vegetation across watershed). It is unclear how these effects will alter the spatial and temporal dynamics of denitrification, a potential p...

Topographic and physicochemical controls on soil denitrification potential in prior converted croplands located on the Delmarva Peninsula, USA

USDA-ARS?s Scientific Manuscript database

Topography and soil physiochemical characteristics exert substantial controls on denitrification in agricultural lands. In order to depict these controls at a landscape scale for decision support applications, metrics (i.e., proxies) must be developed based on commonly available geospatial data. In ...

Influence of natural and novel organic carbon sources on denitrification in forest, degraded urban, and restored streams

EPA Science Inventory

Organic carbon is important in regulating ecosystem function, and its source and abundance may be altered by urbanization. We investigated shifts in organic carbon quantity and quality associated with urbanization and ecosystem restoration, and its potential effects on denitrific...

Nitrogen Uptake and Denitrification in Restored and Unrestored Streams in Urban Maryland, USA

EPA Science Inventory

There is growing interest in rates of nitrate uptake and denitrification in restored streams to better understand the effects of restoration on nitrogen processing. This study quantified nitrate uptake in 2 restored and 2 unrestored streams in Baltimore, Maryland, U.S.A. using n...

Nitrous oxide emission from denitrification in stream and river networks

Treesearch

J.J. Beaulieu; J.L. Tank; S.K. Hamilton; W.M. Wollheim; R.O. Hall; P.J. Mulholland; B.J. Peterson; L.R. Ashkenas; L.W. Cooper; C.N. Dahm; W.K. Dodds; N.B. Grimm; S.L. Johnson; W.H. McDowell; G.C. Poole; H.M. Valett; C.P. Arango; M.J. Bernot; A.J. Burgin; C.L. Crenshaw; A.M. Helton; L.T. Johnson; J.M. O' Brien; J.D. Potter; R.W. Sheibley; D.J. Sobota; S.M. Thomas

2011-01-01

Nitrous oxide (N20) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N20 via microbial denitrification that converts N to N20 and dinitrogen (N2...

Nitrous oxide emission from denitrification in stream and river networks

EPA Science Inventory

Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N2O via microbial denitrification which converts N to N2O and dinitrog...

PREDICTING IMPACTS OF REROUTING DRAINAGE WATER FROM THE PAMLICO SOUND TO RESTORED WETLANDS—A CRITICAL COMPONENT TO GALVANIZE STAKEHOLDER COOPERATION

EPA Science Inventory

Denitrification, a microbially mediated transformation of nitrate to nitrogen gas that escapes from the wetland to the atmosphere, has been identified as the primary pathway for nitrogen removal in wetlands. Requirements for denitrification, which include anoxic conditions,...

Denitrification kinetics in biomass and biochar amended soils of different landscape positions

USDA-ARS?s Scientific Manuscript database

Knowledge of how biochar impacts soil denitrification kinetics as well as the mechanisms of interactions are essential in order to better predict the nitrous oxide (N2O) mitigation capacity of biochar additions. This study had multiple experiments in which the effect of three biochar materials produ...

Contrasting nutrient mitigation and denitrification potential of agricultural drainage environments with different emergent aquatic macrophytes.

USDA-ARS?s Scientific Manuscript database

Remediation of excess nitrogen (N) in agricultural runoff can be enhanced by establishing wetland vegetation but the role of denitrification in N removal is not well understood in drainage ditches. We quantified differences in N retention during experimental runoff events followed by stagnant period...

Denitrification and gas emissions from organic soils under different water-table and flooding management

USDA-ARS?s Scientific Manuscript database

Draining the Florida Everglades for agricultural use has led to land subsidence and increase phosphorus loads to the southern Everglades, environmental concerns which can be limited by controlling water table depth. The resulting anaerobic conditions in saturated soils may lead to increased denitrif...

Dissipation of atrazine, enrofloxacin, and sulfamethazine in wood chip bioreactors and impact on denitrification

USDA-ARS?s Scientific Manuscript database

Wood chip bioreactors are receiving increasing attention as a means of reducing nitrate in subsurface tile drainage systems. Agrochemicals in tile drainage water entering wood chip bioreactors can be retained or degraded and may impact denitrification. The degradation of 5 mg L-1 atrazine, enrofloxa...

Nitrous Oxide Emissions from Riparian Forest Buffers, Warm-Season and Cool-Season Grass Filters, and Crop Fields

USDA-ARS?s Scientific Manuscript database

Increasing denitrification rates in riparian buffers may be trading the problem of nonpoint source (NPS) pollution of surface waters for atmospheric deterioration and increased global warming potential because denitrification produces nitrous oxide (N2O), a greenhouse gas also involved in stratosphe...

Multi-scale measurements and modeling of denitrification in streams with varying flow and nitrate concentration in the upper Mississippi River basin, USA

USGS Publications Warehouse

Böhlke, John Karl; Antweiler, Ronald C.; Harvey, Judson W.; Laursen, Andrew E.; Smith, Lesley K.; Smith, Richard L.; Voytek, Mary A.

2009-01-01

Denitrification is an important net sink for NO3− in streams, but direct measurements are limited and in situ controlling factors are not well known. We measured denitrification at multiple scales over a range of flow conditions and NO3− concentrations in streams draining agricultural land in the upper Mississippi River basin. Comparisons of reach-scale measurements (in-stream mass transport and tracer tests) with local-scale in situ measurements (pore-water profiles, benthic chambers) and laboratory data (sediment core microcosms) gave evidence for heterogeneity in factors affecting benthic denitrification both temporally (e.g., seasonal variation in NO3− concentrations and loads, flood-related disruption and re-growth of benthic communities and organic deposits) and spatially (e.g., local stream morphology and sediment characteristics). When expressed as vertical denitrification flux per unit area of streambed (Udenit, in μmol N m−2 h−1), results of different methods for a given set of conditions commonly were in agreement within a factor of 2–3. At approximately constant temperature (~20 ± 4°C) and with minimal benthic disturbance, our aggregated data indicated an overall positive relation between Udenit (~0–4,000 μmol N m−2 h−1) and stream NO3−concentration (~20–1,100 μmol L−1) representing seasonal variation from spring high flow (high NO3−) to late summer low flow (low NO3−). The temporal dependence of Udenit on NO3−was less than first-order and could be described about equally well with power-law or saturation equations (e.g., for the unweighted dataset, Udenit ≈26 * [NO3−]0.44 or Udenit≈640 * [NO3−]/[180 + NO3−]; for a partially weighted dataset, Udenit ≈14 * [NO3−]0.54 or Udenit ≈700 * [NO3−]/[320 + NO3−]). Similar parameters were derived from a recent spatial comparison of stream denitrification extending to lower NO3− concentrations (LINX2), and from the combined dataset from both studies over 3 orders of magnitude in NO3−concentration. Hypothetical models based on our results illustrate: (1) Udenit was inversely related to denitrification rate constant (k1denit, in day−1) and vertical transfer velocity (vf,denit, in m day−1) at seasonal and possibly event time scales; (2) although k1denit was relatively large at low flow (low NO3−), its impact on annual loads was relatively small because higher concentrations and loads at high flow were not fully compensated by increases in Udenit; and (3) although NO3− assimilation and denitrification were linked through production of organic reactants, rates of NO3− loss by these processes may have been partially decoupled by changes in flow and sediment transport. Whereas k1denit and vf,denit are linked implicitly with stream depth, NO3− concentration, and(or) NO3− load, estimates of Udenit may be related more directly to field factors (including NO3− concentration) affecting denitrification rates in benthic sediments. Regional regressions and simulations of benthic denitrification in stream networks might be improved by including a non-linear relation between Udenit and stream NO3−concentration and accounting for temporal variation.

[Characteristics of nitrogen fixation and denitrification in Termites Neotermes castaneus, Zootermopsis angusticollis, and Reticulitermes lucifugus].

PubMed

Golichenkov, M V; Kostina, N V; Ul'ianova, T A; Dobrovol'skaia, T G; Umarov, M M

2002-01-01

We studied specific features of microbial nitrogen fixation and denitrification in laboratory cultures of the termites Neotermes castaneus, Zootermopsis angusticollis, and Reticulitermes lucifugus, as well as in their nest materials. The nitrogenase activity in the termites was much higher than in the materials of termitarium. Denitrification was found only in the nest materials of termitarium. Studies of the bacterial community of gut nitrogen fixers Neotermes castaneus have shown the predominance of anaerobic and facultatively anaerobic bacteria that amount to up to 60% of the total number of "gut" bacteria. In the materials of termitarium, aerobic cellulose-destroying myxobacteria predominated, which are typical inhabitants of plant substrates, a food for the termite.

Observations of denitrification and dehydration in the winter polar stratospheres

NASA Technical Reports Server (NTRS)

Fahey, D. W.; Kelly, K. K.; Kawa, S. R.; Tuck, A. F.; Loewenstein, M.

1990-01-01

It is argued that denitrification of the Arctic stratosphere can be explained by the selective growth and sedimentation of aerosol particles rich in nitric acid. Because reactive nitrogen species moderate the destruction of ozone by chlorine-catalyzed reactions by sequestering chlorine in reservoir species such as ClONO2, the possibility of the removal of reactive nitrogen without dehydration should be allowed for in attempts to model ozone depletion in the Arctic. Indeed, denitrification along with elevated concentrations of reactive chlorine observed in 1989 indicate that the Arctic was chemically primed for ozone destruction without an extended period of temperatures below the frost point, as is characteristic of the Antarctic.

Modeling and mitigation of denitrification 'woodchip' bioreactor phosphorus releases during treatment of aquaculture wastewater

USDA-ARS?s Scientific Manuscript database

Denitrification 'woodchip' bioreactors designed to remove nitrate from agricultural waters may either be phosphorus sources or sinks. A 24 d batch test showed woodchip leaching is an important source of phosphorus during bioreactor start-up with a leaching potential of approximately 20 -30 mg P per ...

Estimating rates of denitrification enzyme activity in wetland soils and direct simultaneous quantification of nitrogen and nitrous oxide by membrane inlet mass spectrometry

EPA Science Inventory

Denitrification enzyme activity (DEA) was measured in short-term (4 h) anaerobic assays using Membrane Inlet Mass Spectrometry (MIMS) and electron capture gas chromatography (GC-ECD). Using MIMS, modifications of the instrument and sample handling allowed for the simultaneous me...

Isotopic signals of summer denitrification in a northern hardwood forested catchment

Treesearch

Sarah K. Wexler; Christine L. Goodale; Kevin J. McGuire; Scott W. Bailey; Peter M. Groffman

2014-01-01

Despite decades of measurements, the nitrogen balance of temperate forest catchments remains poorly understood. Atmospheric nitrogen deposition often greatly exceeds streamwater nitrogen losses; the fate of the remaining nitrogen is highly uncertain. Gaseous losses of nitrogen to denitrification are especially poorly documented and are often ignored. Here, we provide...

Landscape scale estimation of denitrification rate and nitrous oxide to dinitrogen ratio at Georgia and Pennsylvania sites

USDA-ARS?s Scientific Manuscript database

Denitrification results in a significant loss of plant-available nitrogen from agricultural systems and contributes to climate change, due to the emissions of both the potent greenhouse gas nitrous oxide and environmentally benign dinitrogen. However total quantities of the gases emitted and the ra...

Denitrification alternates between a source and sink of nitrous oxide in the hypolimnion of a thermally stratified reservoir

EPA Science Inventory

Nitrogen loading from developed watersheds to aquatic ecosystems can stimulate microbial denitrification, a process which reduces nitrate (NO3-) to dinitrogen (N2) or nitrous oxide (N2O), the latter a potent greenhouse gas. While aquatic ecosystems are a globally significant sou...

Denitrification potential in sediments of headwater streams in the southern appalachian mountains, USA

Treesearch

Lara A. Martin; Patrick J. Mulholland; Jackson R. Webster; H. Maurice Vallett

2001-01-01

We investigated variations in resource availability (NOa-N and labile organic C [LOCJ] as determinants of potential denitrification in stream sediments in the southern Appalachian Mountains, USA. stream-water and sediments were sampled seasonally in 2 streams of contrasting NO3,-N availability, Noland Creek (high NO

Nitrate removal from drinking water with a focus on biological methods: a review.

PubMed

Rezvani, Fariba; Sarrafzadeh, Mohammad-Hossein; Ebrahimi, Sirous; Oh, Hee-Mock

2017-05-31

This article summarizes several developed and industrial technologies for nitrate removal from drinking water, including physicochemical and biological techniques, with a focus on autotrophic nitrate removal. Approaches are primarily classified into separation-based and elimination-based methods according to the fate of the nitrate in water treatment. Biological denitrification as a cost-effective and promising method of biological nitrate elimination is reviewed in terms of its removal process, applicability, efficiency, and associated disadvantages. The various pathways during biological nitrate removal, including assimilatory and dissimilatory nitrate reduction, are also explained. A comparative study was carried out to provide a better understanding of the advantages and disadvantages of autotrophic and heterotrophic denitrification. Sulfur-based and hydrogen-based denitrifications, which are the most common autotrophic processes of nitrate removal, are reviewed with the aim of presenting the salient features of hydrogenotrophic denitrification along with some drawbacks of the technology and research areas in which it could be used but currently is not. The application of algae-based water treatment is also introduced as a nature-inspired approach that may broaden future horizons of nitrate removal technology.

A high-efficiency denitrification bioreactor for the treatment of acrylonitrile wastewater using waterborne polyurethane immobilized activated sludge.

PubMed

Dong, Honghong; Wang, Wei; Song, Zhaozheng; Dong, Hao; Wang, Jianfeng; Sun, Shanshan; Zhang, Zhongzhi; Ke, Ming; Zhang, Zhenjia; Wu, Wei-Min; Zhang, Guangqing; Ma, Jie

2017-09-01

The performance of a laboratory-scale, high-efficiency denitrification bioreactor (15L) using activated sludge immobilized by waterborne polyurethane in treating acrylonitrile wastewater with high concentration of nitrate nitrogen (249mg/L) was investigated. The bioreactor was operated at 30°C for 220days. Batch denitrification experiments showed that the optimal operation parameters were C/NO 3 - -N molar ratio of 2.0 using sodium acetate as electron donor and carrier filling rate of 20% (V/V) in the bioreactor. Stable performance of denitrification was observed with a hydraulic retention time of 30 to 38h. A volumetric removal rate up to 2.1kgN/m 3 ·d was achieved with a total nitrogen removal efficiency of 95%. Pyrosequencing results showed that Rhodocyclaceae and Pseudomonadaceae were the dominant bacterial families in the immobilized carrier and bioreactor effluent. The overall microbial diversity declined as denitrifiers gradually dominated and the relative abundance of other bacteria decreased along with testing time. Copyright © 2017 Elsevier Ltd. All rights reserved.

Micro-electrolysis/retinervus luffae-based simultaneous autotrophic and heterotrophic denitrification for low C/N wastewater treatment.

PubMed

Li, Jinlong; Li, Desheng; Cui, Yuwei; Xing, Wei; Deng, Shihai

2017-07-01

Nitrogen bioremediation in organic insufficient wastewater generally requires an extra carbon source. In this study, nitrate-contaminated wastewater was treated effectively through simultaneous autotrophic and heterotrophic denitrification based on micro-electrolysis carriers (MECs) and retinervus luffae fructus (RLF), respectively. The average nitrate and total nitrogen removal rates reached 96.3 and 94.0% in the MECs/RLF-based autotrophic and heterotrophic denitrification (MRAHD) system without ammonia and nitrite accumulation. The performance of MRAHD was better than that of MEC-based autotrophic denitrification for the wastewater treatment with low carbon nitrogen (COD/N) ratio. Real-time quantitative polymerase chain reaction (qPCR) revealed that the relative abundance of nirS-type denitrifiers attached to MECs (4.9%) and RLF (5.0%) was similar. Illumina sequencing suggested that the dominant genera were Thiobacillus (7.0%) and Denitratisoma (5.7%), which attached to MECs and RLF, respectively. Sulfuritalea was discovered as the dominant genus in the middle of the reactor. The synergistic interaction between autotrophic and heterotrophic denitrifiers played a vital role in the mixotrophic substrate environment.

Coupling between anammox and autotrophic denitrification for simultaneous removal of ammonium and sulfide by enriched marine sediments.

PubMed

Rios-Del Toro, E Emilia; Cervantes, Francisco J

2016-06-01

In the present study, the capacity of enrichments derived from marine sediments collected from different sites of the Mexican littoral to perform anaerobic ammonium oxidation (anammox) coupled to sulfide-dependent denitrification for simultaneous removal of ammonium and sulfide linked to nitrite reduction was evaluated. Sulfide-dependent denitrification out-competed anammox during the simultaneous oxidation of sulfide and ammonium. Significant accumulation of elemental sulfur (ca. 14-30 % of added sulfide) occurred during the coupling between the two respiratory processes, while ammonium was partly oxidized (31-47 %) due to nitrite limitation imposed in sediment incubations. Nevertheless, mass balances revealed up to 38 % more oxidation of the electron donors available (ammonium and sulfide) than that expected from stoichiometry. Recycling of nitrite, from nitrate produced through anammox, is proposed to contribute to extra oxidation of sulfide, while additional ammonium oxidation is suggested by sulfate-reducing anammox (SR-anammox). The complex interaction between nitrogenous and sulfurous compounds occurring through the concomitant presence of autotrophic denitrification, conventional anammox and SR-anammox may significantly drive the nitrogen and sulfur fluxes in marine environments.

Removal of highly elevated nitrate from drinking water by pH-heterogenized heterotrophic denitrification facilitated with ferrous sulfide-based autotrophic denitrification.

PubMed

Huang, Bin; Chi, Guangyu; Chen, Xin; Shi, Yi

2011-11-01

The performance of acetic acid-supported pH-heterogenized heterotrophic denitrification (HD) facilitated with ferrous sulfide-based autotrophic denitrification (AD) was investigated in upflow activated carbon-packed column reactors for reliable removal of highly elevated nitrate (42 mg NO(3)-Nl(-1)) in drinking water. The use of acetic acid as substrate provided sufficient internal carbon dioxide to completely eliminate the need of external pH adjustment for HD, but simultaneously created vertically heterogenized pH varying from 4.8 to 7.8 in the HD reactor. After 5-week acclimation, the HD reactor developed a moderate nitrate removal capacity with about one third of nitrate removal occurring in the acidic zone (pH 4.8-6.2). To increase the treatment reliability, acetic acid-supported HD was operated under 10% carbon limitation to remove >85% of nitrate, and ferrous sulfide-based AD was supplementally operated to remove residual nitrate and formed nitrite without excess of soluble organic carbon, nitrite or sulfate in the final effluent. Copyright © 2011 Elsevier Ltd. All rights reserved.

Characteristic of nitrous oxide production in partial denitrification process with high nitrite accumulation.

PubMed

Du, Rui; Peng, Yongzhen; Cao, Shenbin; Wang, Shuying; Niu, Meng

2016-03-01

Nitrous oxide (N2O) production during the partial denitrification process with nitrate (NO3(-)-N) to nitrite (NO2(-)-N) transformation ratio of 80% was investigated in this study. Results showed that N2O was seldom observed before complete depletion of NO3(-)-N, but it was closely related to the reduction of NO2(-)-N rather than NO3(-)-N. High COD/NO3(-)-N was in favor of N2O production in partial denitrification with high NO2(-)-N accumulation. It was seriously enhanced at constant acidic pH due to the free nitrous acid (FNA) inhibition. However, the N2O production was much lower at initial pH of 5.5 and 6.5 due to the pH increase during denitrification process. Significantly, the pH turning point could be chosen as a controlled parameter to denote the end of NO3(-)-N reduction, which could not only achieve high NO2(-)-N accumulation but also decrease the N2O production significantly for practical application. Copyright © 2015 Elsevier Ltd. All rights reserved.

Bioaugmented sulfur-oxidizing denitrification system with Alcaligenes defragrans B21 for high nitrate containing wastewater treatment.

PubMed

Flores, Angel; Nisola, Grace M; Cho, Eulsaeng; Gwon, Eun-Mi; Kim, Hern; Lee, Changhee; Park, Shinjung; Chung, Wook-Jin

2007-05-01

The performance of enriched sludge augmented with the B21 strain of Alcaligenes defragrans was compared with that of enriched sludge, as well as with pure Alcaligenes defragrans B21, in the context of a sulfur-oxidizing denitrification (SOD) process. In synthetic wastewater treatment containing 100-1,000 mg NO3-N/L, the single strain-seeded system exhibited superior performance, featuring higher efficiency and a shorter startup period, provided nitrate loading rate was less than 0.2 kg NO3-N/m(3) per day. At nitrate loading rate of more than 0.5 kg NO3-N/m(3) per day, the bioaugmented sludge system showed higher resistance to shock loading than two other systems. However, no advantage of the bioaugmented system over the enriched sludge system without B21 strain was observed in overall efficiency of denitrification. Both the bioaugmented sludge and enriched sludge systems obtained stable denitrification performance of more than 80% at nitrate loading rate of up to 2 kg NO3-N/m(3) per day.

Integrating anammox with the autotrophic denitrification process via electrochemistry technology.

PubMed

Qiao, Sen; Yin, Xin; Zhou, Jiti; Wei, Li'e; Zhong, Jiayou

2018-03-01

In this study, an autotrophic denitrification process was successfully coupled with anammox to remove the nitrate by-product via electrochemical technology. When the voltage applied to the combined electrode reactor was 1.5 V, the electrode reaction removed nitrate by using the autotrophic denitrification biomass without affecting the anammox biomass. The nitrogen removal efficiency of the combined electrode reactor reached 99.1% without detectable nitrate at an influent NO 2 - -N/NH 4 + -N ratio of 1.5. On day 223, using the model calculations based on reaction equations, 19.7% of total nitrogen was removed via the autotrophic denitrification process, while the majority of nitrogen removal (approximately 79.4%) was attributed to the anammox reaction. Small variations of the population numbers and community structure of artificial bacteria according to electron microscopy predicted that the anammox and autotrophic denitrifying biomasses could coexist in the electrode reactor. Then, 16S rRNA analysis determined that the anammox biomass group was always dominant in mixed flora during continuous cultivation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Bacterial community evolutions driven by organic matter and powder activated carbon in simultaneous anammox and denitrification (SAD) process.

PubMed

Ge, Cheng-Hao; Sun, Na; Kang, Qi; Ren, Long-Fei; Ahmad, Hafiz Adeel; Ni, Shou-Qing; Wang, Zhibin

2018-03-01

A distinct shift of bacterial community driven by organic matter (OM) and powder activated carbon (PAC) was discovered in the simultaneous anammox and denitrification (SAD) process which was operated in an anti-fouling submerged anaerobic membrane bio-reactor. Based on anammox performance, optimal OM dose (50 mg/L) was advised to start up SAD process successfully. The results of qPCR and high throughput sequencing analysis indicated that OM played a key role in microbial community evolutions, impelling denitrifiers to challenge anammox's dominance. The addition of PAC not only mitigated the membrane fouling, but also stimulated the enrichment of denitrifiers, accounting for the predominant phylum changing from Planctomycetes to Proteobacteria in SAD process. Functional genes forecasts based on KEGG database and COG database showed that the expressions of full denitrification functional genes were highly promoted in R C , which demonstrated the enhanced full denitrification pathway driven by OM and PAC under low COD/N value (0.11). Copyright © 2017 Elsevier Ltd. All rights reserved.

Ammonium removal pathways and microbial community in GAC-sand dual media filter in drinking water treatment.

PubMed

Feng, Shuo; Xie, Shuguang; Zhang, Xiaojian; Yang, Zhiyu; Ding, Wei; Liao, Xiaobin; Liu, Yuanyuan; Chen, Chao

2012-01-01

A GAC-sand dual media filter (GSF) was devised as an alternative solution for drinking water treatment plant to tackle the raw water polluted by ammonium in place of expensive ozone-GAC processes or bio-pretreatments. The ammonium removal pathways and microbial community in the GSFs were investigated. The concentrations of ammonium, nitrite and nitrate nitrogen were monitored along the filter. Total inorganic nitrogen (TIN) loss occurred during the filtration. For 1 mg ammonium removal, the TIN loss was as high as 0.35 mg, DO consumption was 3.06 mg, and alkalinity consumption was 5.55 mg. It was assumed that both nitrification and denitrification processes occur in the filters to fit the TIN loss and low DO consumption. During the filtration, nitritation, nitrification and nitritation-anaerobic ammonium oxidation processes probably occur, while traditional nitrification and denitrification and simultaneous nitrification and denitrification processes may occur. In the GSFs, Nitrosomonas and Nitrospira are likely to be involved in nitrification processes, while Novosphingobium, Comamonadaceae and Oxalobacteraceae may be involved in denitrification processes.

Investigation of Polar Stratospheric Cloud Solid Particle Formation Mechanisms Using ILAS and AVHRR Observations in the Arctic

NASA Technical Reports Server (NTRS)

Irie, H.; Pagan, K. L.; Tabazadeh, A.; Legg, M. J.; Sugita, T.

2004-01-01

Satellite observations of denitrification and ice clouds in the Arctic lower stratosphere in February 1997 are used with Lagrangian microphysical box model calculations to evaluate nucleation mechanisms of solid polar stratospheric cloud (PSC) particles. The occurrences of ice clouds are not correlated in time and space with the locations of back trajectories of denitrified air masses, indicating that ice particle surfaces are not always a prerequisite for the formation of solid PSCs that lead to denitrification. In contrast, the model calculations incorporating a pseudoheterogeneous freezing process occurring at the vapor-liquid interface can quantitatively explain most of the observed denitrification when the nucleation activation free energy for nitric acid dihydrate formation is raised by only approx.10% relative to the current published values. Once nucleated, the conversion of nitric acid dihydrate to the stable trihydrate phase brings the computed levels of denitrification closer to the measurements. INDEX TERMS: 0305 Atmospheric Composition and Structure: Aerosols and particles (0345, 4801); 0320 Atmospheric Composition and SblctureC: loud physics and chemistry; 0340 Atmospheric Composition and Structure: Middle atmosphere-composition and chemistry

Selection and application of agricultural wastes as solid carbon sources and biofilm carriers in MBR.

PubMed

Yang, Xiao-Li; Jiang, Qi; Song, Hai-Liang; Gu, Tian-Tian; Xia, Ming-Qian

2015-01-01

This paper examined the feasibility of agricultural wastes used as solid carbon sources and the effect of determined agricultural wastes on improving denitrification. Eight agricultural wastes were evaluated in MBR tests to find out their carbon release capacity, denitrification potential, leaching elements and surface properties. The results showed that retinervus luffae fructus, wheat straw, corncob and rice straw had higher carbon release capacity with COD of 13.17-21.07 mg g(-1)day(-1), BOD5 of 3.33-7.33 mg g(-1)day(-1) and respirable carbon of 8.64-10.71 mg g(-1)day(-1). Correspondingly, they displayed a good denitrification potential of 105.3-140.1mg NO3(-)-Ng(-1). Rice straw, retinervus luffae fructus and corncob were then applied in MBRs. These three agricultural wastes were found to be effective in enhancing the denitrification process, where the TN removal increased from 43.44% (control MBR) to 82.34, 68.92 and 62.97%, respectively. Copyright © 2014 Elsevier B.V. All rights reserved.

Characterization of a halophilic heterotrophic nitrification-aerobic denitrification bacterium and its application on treatment of saline wastewater.

PubMed

Duan, Jinming; Fang, Hongda; Su, Bing; Chen, Jinfang; Lin, Jinmei

2015-03-01

A novel halophilic bacterium capable of heterotrophic nitrification-aerobic denitrification was isolated from marine sediments and identified as Vibrio diabolicus SF16. It had ability to remove 91.82% of NH4(+)-N (119.77 mg/L) and 99.71% of NO3(-)-N (136.43 mg/L). The nitrogen balance showed that 35.83% of initial NH4(+)-N (119.77 mg/L) was changed to intracellular nitrogen, and 53.98% of the initial NH4(+)-N was converted to gaseous denitrification products. The existence of napA gene further proved the aerobic denitrification ability of strain SF16. The optimum culture conditions were salinity 1-5%, sodium acetate as carbon source, C/N 10, and pH 7.5-9.5. When an aerated biological filter system inoculated with strain SF16 was employed to treat saline wastewater, the average removal efficiency of NH4(+)-N and TN reached 97.14% and 73.92%, respectively, indicating great potential of strain SF16 for future full-scale applications. Copyright © 2014 Elsevier Ltd. All rights reserved.

Toxic effects of vanadium (V) on a combined autotrophic denitrification system using sulfur and hydrogen as electron donors.

PubMed

Chen, Dan; Xiao, Zhixing; Wang, Hongyu; Yang, Kai

2018-05-27

Vanadium (V) is a common heavy metal and often co-occurs with nitrate in effluents from mining and metal finishing industry. In the present study, the toxic effects of V(V) were examined in a sulfur and hydrogen based autotrophic denitrification system. This combined system achieved simultaneously microbial denitrification and V(V) reduction. High concentration of V(V) (60 and 100 mg/L) inhibited the denitrification activities, while 30 mg/L V(V) had a very slight effect. V(V) induced increases of lactate dehydrogenase release and reactive oxygen species production, which may inhibit nitrate and nitrite reductases activities and abundances of denitrifying functional genes. Moreover, the extracellular polymeric substance production was also suppressed under V(V) stress, thereby decreasing the amount of biofilm biomass. Microbial community analyses suggesting the genus Bacillus may have higher tolerance to V(V). These findings can provide scientific basis for the optimized design of treatment system to remove nitrate and V(V) simultaneously. Copyright © 2018 Elsevier Ltd. All rights reserved.

Endogenous influences on anammox and sulfocompound-oxidizing autotrophic denitrification coupling system (A/SAD) and dynamic operating strategy.

PubMed

Sun, Xinbo; Du, Lingfeng; Hou, Yuqian; Cheng, Shaoju; Zhang, Xuxiang; Liu, Bo

2018-02-21

The anaerobic ammonia oxidation (anammox) and sulfocompound-oxidizing autotrophic denitrification coupling system (A/SAD) was initiated in an expanded granular sludge bed (EGSB) reactor for nitrogen removal from high-strength wastewater. Owing to cooperation between anammox and partial sulfocompound-oxidation autotrophic denitrification coupling system (PSAD), the highest nitrogen removal efficiency (NRE) of 98.1% ± 0.4% achieved at the optimal influent conditions of conversion efficiency of ammonium (CEA) of 55% and S 2 O 3 2- -S/NO 3 - -N (S/N) of 1.4 mol mol -1 . The activity of the short-cut sulfocompound-oxidizing autotrophic denitrification (SSAD) was also regulated to cope with dynamic CEA in the influent by changing the S/N, which was demonstrated to be effective in alleviating nitrite accumulation when the CEA was between 57% and 61%. Both the anammox and SAD bacteria enriched in the reactor after long-term incubation. Candidatus Brocadia and Candidatus Jettenia might be potentially contributing the most to anammox, while the Thiobacillus was the dominant taxa related to SAD. Copyright © 2018. Published by Elsevier Ltd.

Ozone disintegration of excess biomass and application to nitrogen removal.

PubMed

Park, Ki Young; Lee, Jae Woo; Ahn, Kyu-Hong; Maeng, Sung Kyu; Hwang, Jong Hyuk; Song, Kyung-Guen

2004-01-01

A pilot-scale facility integrated with an ozonation unit was built to investigate the feasibility of using ozone-disintegration byproducts of wasted biomass as a carbon source for denitrification. Ozonation of biomass resulted in mass reduction by mineralization as well as by ozone-disintegrated biosolids recycling. Approximately 50% of wasted solids were recovered as available organic matter (ozonolysate), which included nonsettleable microparticles and soluble fractions. Microparticles were observed in abundance at relatively low levels of ozone doses, while soluble fractions became dominant at higher levels of ozone doses in ozone-disintegrated organics. Batch denitrification experiments showed that the ozonolysate could be used as a carbon source with a maximum denitrification rate of 3.66 mg nitrogen (N)/g volatile suspended solids (VSS) x h. Ozonolysate was also proven to enhance total nitrogen removal efficiency in the pilot-scale treatment facility. An optimal chemical oxygen demand (COD)-to-nitrogen ratio for complete denitrification was estimated as 5.13 g COD/g N. The nitrogen-removal performance of the modified intermittently decanted extended aeration process dependent on an external carbon supply could be described as a function of solids retention time.

Assessment of sulfide production risk in soil during the infiltration of domestic wastewater treated by a sulfur-utilizing denitrification process.

PubMed

Ghorbel, L; Coudert, L; Gilbert, Y; Mercier, G; Blais, J F

2016-10-01

This study aimed to determine the potential of sulfide generation during infiltration through soil of domestic wastewater treated by a sulfur-utilizing denitrification process. Three types of soil with different permeability rates (K s = 0.028, 0.0013, and 0.00015 cm/s) were investigated to evaluate the potential risk of sulfur generation during the infiltration of domestic wastewater treated by a sulfur-utilizing denitrification system. These soils were thoroughly characterized and tested to assess their capacity to be used as drainages for wastewaters. Experiments were conducted under two operating modes (saturated and unsaturated). Sulfate, sulfide, and chemical oxygen demand (COD) levels were determined over a period of 100 days. Despite the high concentration of sulfates (200 mg/L) under anaerobic conditions (ORP = -297 mV), no significant amount of sulfide was generated in the aqueous (<0.2 mg/L) or gaseous (<0.15 ppm) phases. Furthermore, the soil permeability did not have a noticeable effect on the infiltration of domestic wastewater treated by a sulfur-utilizing denitrification system due to low contents of organic matter (i.e., dissolved organic carbon, DOC). The autotrophic denitrification process used to treat the domestic wastewater allowed the reduction of the concentration of biochemical oxygen demand (BOD5) below 5 mg/L, of DOC below 7 mg/L, and of COD below 100 mg/L.

Impact of Land Use Management and Soil Properties on Denitrifier Communities of Namibian Savannas.

PubMed

Braker, Gesche; Matthies, Diethart; Hannig, Michael; Brandt, Franziska Barbara; Brenzinger, Kristof; Gröngröft, Alexander

2015-11-01

We studied potential denitrification activity and the underlying denitrifier communities in soils from a semiarid savanna ecosystem of the Kavango region in NE Namibia to help in predicting future changes in N(2)O emissions due to continuing changes of land use in this region. Soil type and land use (pristine, fallow, and cultivated soils) influenced physicochemical characteristics of the soils that are relevant to denitrification activity and N(2)O fluxes from soils and affected potential denitrification activity. Potential denitrification activity was assessed by using the denitrifier enzyme activity (DEA) assay as a proxy for denitrification activity in the soil. Soil type and land use influenced C and N contents of the soils. Pristine soils that had never been cultivated had a particularly high C content. Cultivation reduced soil C content and the abundance of denitrifiers and changed the composition of the denitrifier communities. DEA was strongly and positively correlated with soil C content and was higher in pristine than in fallow or recently cultivated soils. Soil type and the composition of both the nirK- and nirS-type denitrifier communities also influenced DEA. In contrast, other soil characteristics like N content, C:N ratio, and pH did not predict DEA. These findings suggest that due to greater availability of soil organic matter, and hence a more effective N cycling, the natural semiarid grasslands emit more N(2)O than managed lands in Namibia.

In situ nitrogen removal from leachate by bioreactor landfill with limited aeration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shao Liming; He Pinjing; Li Guojian

2008-07-01

The feasibility of simultaneous nitrification and denitrification in a bioreactor landfill with limited aeration was assessed. Three column reactors, simulating bioreactor landfill operations under anaerobic condition (as reference), intermittent forced aeration and enhanced natural aeration were hence established, where aerated columns passed through two phases, i.e., fresh landfill and well-decomposed landfill. The experimental results show that limited aeration decreased nitrogen loadings of leachate distinctly in the fresh landfill. In the well-decomposed landfill, the NH{sub 4}{sup +}-N of the input leachate could be nitrified completely in the aerated landfill columns. The nitrifying loadings of the column cross section reached 7.9 gmore » N/m{sup 2} d and 16.9 g N/m{sup 2} d in the simulated landfill columns of intermittent forced aeration and enhanced natural aeration, respectively. The denitrification was influenced by oxygen distribution in the landfill column. Intermittent existence of oxygen in the landfill with the intermittent forced aeration was favorable to denitrify the NO{sub 2}{sup -}-N and NO{sub 3}{sup -}-N, indicated by the high denitrification efficiency (>99%) under the condition of BOD{sub 5}/TN of more than 5.4 in leachate; locally persistent existence of oxygen in the landfill with enhanced natural aeration could limit the denitrification, indicated by relatively low denitrification efficiency of about 75% even when the BOD{sub 5}/TN in leachate had an average of 7.1.« less

Sediment diffusion method improves wastewater nitrogen removal in the receiving lake sediments.

PubMed

Aalto, Sanni L; Saarenheimo, Jatta; Ropponen, Janne; Juntunen, Janne; Rissanen, Antti J; Tiirola, Marja

2018-07-01

Sediment microbes have a great potential to transform reactive N to harmless N 2 , thus decreasing wastewater nitrogen load into aquatic ecosystems. Here, we examined if spatial allocation of the wastewater discharge by a specially constructed sediment diffuser pipe system enhanced the microbial nitrate reduction processes. Full-scale experiments were set on two Finnish lake sites, Keuruu and Petäjävesi, and effects on the nitrate removal processes were studied using the stable isotope pairing technique. All nitrate reduction rates followed nitrate concentrations, being highest at the wastewater-influenced sampling points. Complete denitrification with N 2 as an end-product was the main nitrate reduction process, indicating that the high nitrate and organic matter concentrations of wastewater did not promote nitrous oxide (N 2 O) production (truncated denitrification) or ammonification (dissimilatory nitrate reduction to ammonium; DNRA). Using 3D simulation, we demonstrated that the sediment diffusion method enhanced the contact time and amount of wastewater near the sediment surface especially in spring and in autumn, altering organic matter concentration and oxygen levels, and increasing the denitrification capacity of the sediment. We estimated that natural denitrification potentially removed 3-10% of discharged wastewater nitrate in the 33 ha study area of Keuruu, and the sediment diffusion method increased this areal denitrification capacity on average 45%. Overall, our results indicate that sediment diffusion method can supplement wastewater treatment plant (WWTP) nitrate removal without enhancing alternative harmful processes. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Labile dissolved organic carbon supply limits hyporheic denitrification

NASA Astrophysics Data System (ADS)

Zarnetske, Jay P.; Haggerty, Roy; Wondzell, Steven M.; Baker, Michelle A.

2011-12-01

We used an in situ steady state 15N-labeled nitrate (15NO3-) and acetate (AcO-) well-to-wells injection experiment to determine how the availability of labile dissolved organic carbon (DOC) as AcO-influences microbial denitrification in the hyporheic zone of an upland (third-order) agricultural stream. The experimental wells receiving conservative (Cl- and Br) and reactive (15NO3-) solute tracers had hyporheic median residence times of 7.0 to 13.1 h, nominal flowpath lengths of 0.7 to 3.7 m, and hypoxic conditions (<1.5 mg O2 L-1). All receiving wells demonstrated 15N2 production during ambient conditions, indicating that the hyporheic zone was an environment with active denitrification. The subsequent addition of AcO- stimulated more denitrification as evidenced by significant δ15N2 increases by factors of 2.7 to 26.1 in receiving wells and significant decreases of NO3- and DO in the two wells most hydrologically connected to the injection. The rate of nitrate removal in the hyporheic zone increased from 218 kg ha-1 yr-1 to 521 kg ha-1 yr-1 under elevated AcO- conditions. In all receiving wells, increases of bromide and 15N2 occurred without concurrent increases in AcO-, indicating that 100% of AcO- was retained or lost in the hyporheic zone. These results support the hypothesis that denitrification in anaerobic portions of the hyporheic zone is limited by labile DOC supply.

Whole-stream response to nitrate loading in three streams draining agricultural landscapes

USGS Publications Warehouse

Duff, J.H.; Tesoriero, A.J.; Richardson, W.B.; Strauss, E.A.; Munn, M.D.

2008-01-01

Physical, chemical, hydrologic, and biologic factors affecting nitrate (NO3 −) removal were evaluated in three agricultural streams draining orchard/dairy and row crop settings. Using 3-d “snapshots” during biotically active periods, we estimated reach-level NO3 − sources, NO3 − mass balance, in-stream processing (nitrification, denitrification, and NO3 − uptake), and NO3 − retention potential associated with surface water transport and ground water discharge. Ground water contributed 5 to 11% to stream discharge along the study reaches and 8 to 42% of gross NO3 − input. Streambed processes potentially reduced 45 to 75% of ground water NO3 − before discharge to surface water. In all streams, transient storage was of little importance for surface water NO3 − retention. Estimated nitrification (1.6–4.4 mg N m−2 h−1) and unamended denitrification rates (2.0–16.3 mg N m−2 h−1) in sediment slurries were high relative to pristine streams. Denitrification of NO3 − was largely independent of nitrification because both stream and ground water were sources of NO3 − Unamended denitrification rates extrapolated to the reach-scale accounted for <5% of NO3 − exported from the reaches minimally reducing downstream loads. Nitrate retention as a percentage of gross NO3 − inputs was >30% in an organic-poor, autotrophic stream with the lowest denitrification potentials and highest benthic chlorophyll a, photosynthesis/respiration ratio, pH, dissolved oxygen, and diurnal NO3 − variation. Biotic processing potentially removed 75% of ground water NO3 − at this site, suggesting an important role for photosynthetic assimilation of ground water NO3 − relative to subsurface denitrification as water passed directly through benthic diatom beds.

Investigation of the effects of hydrogenotrophic denitrification and anammox on the improvement of the quality of the drinking water supply system.

PubMed

Khanitchaidecha, W; Koshy, P; Kamei, T; Shakya, M; Kazama, F

2013-01-01

A drinking water supply system operates at Chyasal (in the Kathmandu Valley, Nepal) for purifying the groundwater that has high levels of ammonium nitrogen (NH4-N). However, high NO3-N concentrations were seen in the water after treatment. To further improve the quality of the drinking water, two types of attached growth reactors were developed for the purification system: (i) a hydrogenotrophic denitrification (HD reactor) and (ii) a concurrent reactor with anammox and hydrogenotrophic denitrification (AnHD reactor). For the HD reactor fed by water containing NO3-N, the denitrification efficiency was high (95-98%) for all NO3-N feed rates (20-40 mg/L). The nitrite-nitrogen (NO2-N) and nitrate-nitrogen (NO3-N) concentrations in the effluent were ∼0.5 mg/L. On the other hand, the AnHD reactor fed with water containing NH4-N and NO2-N was operated under varying flow rates of H2(30-70 mL/min) and intermittent supply periods (1-2 h). The efficiency of the anammox process was found to increase with decreasing H2flow rates or with increasing intermittency of the H2supply, while the efficiency of denitrification decreased under these conditions. For the optimal condition of 1.5 h intermittent H2supply, the anammox and denitrification efficiencies of the AnHD reactor reached 80% and 42%, respectively, while the concentrations of both NH4-N and NO2-N in the effluent were <1.0 mg/L, and no NO3-N was detected. From the experimental results, it is clear that both HD and AnHD reactors can function as efficient and critical units of the water purification system.

Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3−/NO2− reduction pathways in Shewanella loihica strain PV-4

PubMed Central

Yoon, Sukhwan; Cruz-García, Claribel; Sanford, Robert; Ritalahti, Kirsti M; Löffler, Frank E

2015-01-01

Denitrification and respiratory ammonification are two competing, energy-conserving NO3−/NO2− reduction pathways that have major biogeochemical consequences for N retention, plant growth and climate. Batch and continuous culture experiments using Shewanella loihica strain PV-4, a bacterium possessing both the denitrification and respiratory ammonification pathways, revealed factors that determine NO3−/NO2− fate. Denitrification dominated at low carbon-to-nitrogen (C/N) ratios (that is, electron donor-limiting growth conditions), whereas ammonium was the predominant product at high C/N ratios (that is, electron acceptor-limiting growth conditions). pH and temperature also affected NO3−/NO2− fate, and incubation above pH 7.0 and temperatures of 30 °C favored ammonium formation. Reverse-transcriptase real-time quantitative PCR analyses correlated the phenotypic observations with nirK and nosZ transcript abundances that decreased up to 1600-fold and 27-fold, respectively, under conditions favoring respiratory ammonification. Of the two nrfA genes encoded on the strain PV-4 genome, nrfA0844 transcription decreased only when the chemostat reactor received medium with the lowest C/N ratio of 1.5, whereas nrfA0505 transcription occurred at low levels (≤3.4 × 10−2 transcripts per cell) under all growth conditions. At intermediate C/N ratios, denitrification and respiratory ammonification occurred concomitantly, and both nrfA0844 (5.5 transcripts per cell) and nirK (0.88 transcripts per cell) were transcribed. Recent findings suggest that organisms with both the denitrification and respiratory ammonification pathways are not uncommon in soil and sediment ecosystems, and strain PV-4 offers a tractable experimental system to explore regulation of dissimilatory NO3−/NO2− reduction pathways. PMID:25350157

Autotrophic denitrification supported by biotite dissolution in crystalline aquifers: (2) transient mixing and denitrification dynamic during long-term pumping.

PubMed

Roques, Clément; Aquilina, Luc; Boisson, Alexandre; Vergnaud-Ayraud, Virginie; Labasque, Thierry; Longuevergne, Laurent; Laurencelle, Marc; Dufresne, Alexis; de Dreuzy, Jean-Raynald; Pauwels, Hélène; Bour, Olivier

2018-04-01

We investigated the mixing and dynamic of denitrification processes induced by long-term pumping in the crystalline aquifer of Ploemeur (Brittany, France). Hydrological and geochemical parameters have been continuously recorded over 15 boreholes in 5km 2 on a 25-year period. This extensive spatial and temporal monitoring of conservative as well as reactive compounds is a key opportunity to identify aquifer-scale transport and reactive processes in crystalline aquifers. Time series analysis of the conservative elements recorded at the pumped well were used to determine mixing fractions from different compartments of the aquifer on the basis of a Principal Component Analysis approach coupled with an end-member mixing analysis. We could reveal that pumping thus induces a thorough reorganization of fluxes known as capture, favoring infiltration and vertical fluxes in the recharge zone, and upwelling of deep and distant water at long-term time scales. These mixing fractions were then used to quantify the extent of denitrification linked to pumping. Based on the results from batch experiments described in a companion paper, our computations revealed that i) autotrophic denitrification processes are dominant in this context where carbon sources are limited, that ii) nitrate reduction does not only come from the oxidation of pyrite as classically described in previous studies analyzing denitrification processes in similar contexts, and that iii) biotite plays a critical role in sustaining the nitrate reduction process. Both nitrate reduction, sulfate production as well as fluor release ratios support the hypothesis that biotite plays a key role of electron donor in this context. The batch-to-site similarities support biotite availability and the role by bacterial communities as key controls of nitrate removal in such crystalline aquifers. However, the long term data monitoring also indicates that mixing and reactive processes evolve extremely slowly at the scale of the decade. Copyright © 2017 Elsevier B.V. All rights reserved.

N2O production and consumption from stable isotopic and concentration data in the Peruvian coastal upwelling system

NASA Astrophysics Data System (ADS)

Bourbonnais, Annie; Letscher, Robert T.; Bange, Hermann W.; Échevin, Vincent; Larkum, Jennifer; Mohn, Joachim; Yoshida, Naohiro; Altabet, Mark A.

2017-04-01

The ocean is an important source of nitrous oxide (N2O) to the atmosphere, yet the factors controlling N2O production and consumption in oceanic environments are still not understood nor constrained. We measured N2O concentrations and isotopomer ratios, as well as O2, nutrient and biogenic N2 concentrations, and the isotopic compositions of nitrate and nitrite at several coastal stations during two cruises off the Peru coast ( 5-16°S, 75-81°W) in December 2012 and January 2013. N2O concentrations varied from below equilibrium values in the oxygen deficient zone (ODZ) to up to 190 nmol L-1 in surface waters. We used a 3-D-reaction-advection-diffusion model to evaluate the rates and modes of N2O production in oxic waters and rates of N2O consumption versus production by denitrification in the ODZ. Intramolecular site preference in N2O isotopomer was relatively low in surface waters (generally -3 to 14‰) and together with modeling results, confirmed the dominance of nitrifier-denitrification or incomplete denitrifier-denitrification, corresponding to an efflux of up to 0.6 Tg N yr-1 off the Peru coast. Other evidence, e.g., the absence of a relationship between ΔN2O and apparent O2 utilization and significant relationships between nitrate, a substrate during denitrification, and N2O isotopes, suggest that N2O production by incomplete denitrification or nitrifier-denitrification decoupled from aerobic organic matter remineralization are likely pathways for extreme N2O accumulation in newly upwelled surface waters. We observed imbalances between N2O production and consumption in the ODZ, with the modeled proportion of N2O consumption relative to production generally increasing with biogenic N2. However, N2O production appeared to occur even where there was high N loss at the shallowest stations.

Benthic metabolism and nitrogen dynamics in an urbanised tidal creek: Domination of DNRA over denitrification as a nitrate reduction pathway

NASA Astrophysics Data System (ADS)

Dunn, Ryan J. K.; Robertson, David; Teasdale, Peter R.; Waltham, Nathan J.; Welsh, David T.

2013-10-01

Benthic oxygen and nutrient fluxes and nitrate reduction rates were determined seasonally under light and dark conditions at three sites in a micro-tidal creek within an urbanised catchment (Saltwater Creek, Australia). It was hypothesized that stormwater inputs of organic matter and inorganic nitrogen would stimulate rates of benthic metabolism and nutrient recycling and preferentially stimulate dissimilatory nitrate reduction to ammonium (DNRA) over denitrification as a pathway for nitrate reduction. Stormwaters greatly influenced water column dissolved inorganic nitrogen (DIN) and suspended solids concentrations with values following a large rainfall event being 5-20-fold greater than during the preceding dry period. Seasonally, maximum and minimum water column total dissolved nitrogen (TDN) and DIN concentrations occurred in the summer (wet) and winter (dry) seasons. Creek sediments were highly heterotrophic throughout the year, and strong sinks for oxygen, and large sources of dissolved organic and inorganic nitrogen during both light and dark incubations, although micro-phytobenthos (MPB) significantly decreased oxygen consumption and N-effluxes during light incubations due to photosynthetic oxygen production and photoassimilation of nutrients. Benthic denitrification rates ranged from 3.5 to 17.7 μmol N m2 h-1, denitrification efficiencies were low (<1-15%) and denitrification was a minor process compared to DNRA, which accounted for ˜75% of total nitrate reduction. Overall, due to the low denitrification efficiencies and high rates of N-regeneration, Saltwater Creek sediments would tend to increase rather than reduce dissolved nutrient loads to the downstream Gold Coast Broadwater and Moreton Bay systems. This may be especially true during wet periods when increased inputs of particulate organic nitrogen (PON) and suspended solids could respectively enhance rates of N-regeneration and decrease light availability to MPB, reducing their capacity to ameliorate N-effluxes through photoassimilation.

Regional oxygen reduction and denitrification rates in groundwater from multi-model residence time distributions, San Joaquin Valley, USA

USGS Publications Warehouse

Green, Christopher T.; Jurgens, Bryant; Zhang, Yong; Starn, Jeffrey; Singleton, Michael J.; Esser, Bradley K.

2016-01-01

Rates of oxygen and nitrate reduction are key factors in determining the chemical evolution of groundwater. Little is known about how these rates vary and covary in regional groundwater settings, as few studies have focused on regional datasets with multiple tracers and methods of analysis that account for effects of mixed residence times on apparent reaction rates. This study provides insight into the characteristics of residence times and rates of O2 reduction and denitrification (NO3− reduction) by comparing reaction rates using multi-model analytical residence time distributions (RTDs) applied to a data set of atmospheric tracers of groundwater age and geochemical data from 141 well samples in the Central Eastern San Joaquin Valley, CA. The RTD approach accounts for mixtures of residence times in a single sample to provide estimates of in-situ rates. Tracers included SF6, CFCs, 3H, He from 3H (tritiogenic He),14C, and terrigenic He. Parameter estimation and multi-model averaging were used to establish RTDs with lower error variances than those produced by individual RTD models. The set of multi-model RTDs was used in combination with NO3− and dissolved gas data to estimate zero order and first order rates of O2 reduction and denitrification. Results indicated that O2 reduction and denitrification rates followed approximately log-normal distributions. Rates of O2 and NO3− reduction were correlated and, on an electron milliequivalent basis, denitrification rates tended to exceed O2 reduction rates. Estimated historical NO3− trends were similar to historical measurements. Results show that the multi-model approach can improve estimation of age distributions, and that relatively easily measured O2 rates can provide information about trends in denitrification rates, which are more difficult to estimate.

Regional oxygen reduction and denitrification rates in groundwater from multi-model residence time distributions, San Joaquin Valley, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Green, Christopher T.; Jurgens, Bryant C.; Zhang, Yong

Rates of oxygen and nitrate reduction are key factors in determining the chemical evolution of groundwater. Little is known about how these rates vary and covary in regional groundwater settings, as few studies have focused on regional datasets with multiple tracers and methods of analysis that account for effects of mixed residence times on apparent reaction rates. This study provides insight into the characteristics of residence times and rates of O 2 reduction and denitrification (NO 3 – reduction) by comparing reaction rates using multi-model analytical residence time distributions (RTDs) applied to a data set of atmospheric tracers of groundwatermore » age and geochemical data from 141 well samples in the Central Eastern San Joaquin Valley, CA. The RTD approach accounts for mixtures of residence times in a single sample to provide estimates of in-situ rates. Tracers included SF 6, CFCs, 3H, He from 3H (tritiogenic He), 14C, and terrigenic He. Parameter estimation and multi-model averaging were used to establish RTDs with lower error variances than those produced by individual RTD models. The set of multi-model RTDs was used in combination with NO 3 – and dissolved gas data to estimate zero order and first order rates of O 2 reduction and denitrification. Results indicated that O 2 reduction and denitrification rates followed approximately log-normal distributions. Rates of O 2 and NO 3 – reduction were correlated and, on an electron milliequivalent basis, denitrification rates tended to exceed O 2 reduction rates. Estimated historical NO 3 – trends were similar to historical measurements. Here, results show that the multi-model approach can improve estimation of age distributions, and that relatively easily measured O 2 rates can provide information about trends in denitrification rates, which are more difficult to estimate.« less

Plant Trait Diversity Buffers Variability in Denitrification Potential over Changes in Season and Soil Conditions

PubMed Central

McGill, Bonnie M.; Sutton-Grier, Ariana E.; Wright, Justin P.

2010-01-01

Background Denitrification is an important ecosystem service that removes nitrogen (N) from N-polluted watersheds, buffering soil, stream, and river water quality from excess N by returning N to the atmosphere before it reaches lakes or oceans and leads to eutrophication. The denitrification enzyme activity (DEA) assay is widely used for measuring denitrification potential. Because DEA is a function of enzyme levels in soils, most ecologists studying denitrification have assumed that DEA is less sensitive to ambient levels of nitrate (NO3 −) and soil carbon and thus, less variable over time than field measurements. In addition, plant diversity has been shown to have strong effects on microbial communities and belowground processes and could potentially alter the functional capacity of denitrifiers. Here, we examined three questions: (1) Does DEA vary through the growing season? (2) If so, can we predict DEA variability with environmental variables? (3) Does plant functional diversity affect DEA variability? Methodology/Principal Findings The study site is a restored wetland in North Carolina, US with native wetland herbs planted in monocultures or mixes of four or eight species. We found that denitrification potentials for soils collected in July 2006 were significantly greater than for soils collected in May and late August 2006 (p<0.0001). Similarly, microbial biomass standardized DEA rates were significantly greater in July than May and August (p<0.0001). Of the soil variables measured—soil moisture, organic matter, total inorganic nitrogen, and microbial biomass—none consistently explained the pattern observed in DEA through time. There was no significant relationship between DEA and plant species richness or functional diversity. However, the seasonal variance in microbial biomass standardized DEA rates was significantly inversely related to plant species functional diversity (p<0.01). Conclusions/Significance These findings suggest that higher plant functional diversity may support a more constant level of DEA through time, buffering the ecosystem from changes in season and soil conditions. PMID:20661464

The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across an annual and a perennial cropping system.

PubMed

Domeignoz-Horta, Luiz A; Spor, Aymé; Bru, David; Breuil, Marie-Christine; Bizouard, Florian; Léonard, Joël; Philippot, Laurent

2015-01-01

Agriculture is the main source of terrestrial emissions of N2O, a potent greenhouse gas and the main cause of ozone layer depletion. The reduction of N2O into N2 by microorganisms carrying the nitrous oxide reductase gene (nosZ) is the only biological process known to eliminate this greenhouse gas. Recent studies showed that a previously unknown clade of N2O-reducers was related to the capacity of the soil to act as an N2O sink, opening the way for new strategies to mitigate emissions. Here, we investigated whether the agricultural practices could differently influence the two N2O reducer clades with consequences for denitrification end-products. The abundance of N2O-reducers and producers was quantified by real-time PCR, and the diversity of both nosZ clades was determined by 454 pyrosequencing. Potential N2O production and potential denitrification activity were used to calculate the denitrification gaseous end-product ratio. Overall, the results showed limited differences between management practices but there were significant differences between cropping systems in both the abundance and structure of the nosZII community, as well as in the [rN2O/r(N2O+N2)] ratio. More limited differences were observed in the nosZI community, suggesting that the newly identified nosZII clade is more sensitive than nosZI to environmental changes. Potential denitrification activity and potential N2O production were explained mainly by the soil properties while the diversity of the nosZII clade on its own explained 26% of the denitrification end-product ratio, which highlights the importance of understanding the ecology of this newly identified clade of N2O reducers for mitigation strategies.

Performance and microbial community analysis of a novel DEAMOX based on partial-denitrification and anammox treating ammonia and nitrate wastewaters.

PubMed

Du, Rui; Cao, Shenbin; Li, Baikun; Niu, Meng; Wang, Shuying; Peng, Yongzhen

2017-01-01

In this study, a novel DEAMOX (DEnitrifying AMmonium OXidation) process coupling anammox with partial-denitrification generated nitrite (NO 2 - -N) from nitrate (NO 3 - -N) was developed for simultaneously treating ammonia (NH 4 + -N) and NO 3 - -N containing wastewaters. The performance was evaluated in sequencing batch reactors (SBRs) with different carbon sources for partial-denitrification: acetate (R1) and ethanol (R2). Long-term operation (180 days) suggested that desirable nitrogen removal was achieved in both reactors. The performance maintained stably in R1 despite the seasonal decrease of temperature (29.2 °C-12.7 °C), and high nitrogen removal efficiency (NRE) of 93.6% on average was obtained with influent NO 3 - -N to NH 4 + -N ratio (NO 3 - -N/NH 4 + -N) of 1.0. The anammox process contributed above 95% to total nitrogen (TN) removal in R1 with the nitrate-to-nitrite transformation ratio (NTR) of 95.8% in partial-denitrification. A little lower NRE was observed in R2 with temperature dropped from 90.0% at 22.7 °C to 85.2% at 16.6 °C due to the reduced NTR (87.0%-67.0%). High-throughput sequencing analysis revealed that Thauera genera were dominant in both SBRs (accounted for 61.53% in R1 and 45.17% in R2) and possibly played a key role for partial-denitrification with high NO 2 - -N accumulation. The Denitratisoma capable of complete denitrification (NO 3 - -N→N 2 ) was found in R2 that might lead to lower NTR. Furthermore, different anammox species was detected with Candidatus Brocadia and Candidatus Kuenenia in R1, and only Candidatus Kuenenia in R2. Copyright © 2016 Elsevier Ltd. All rights reserved.

Influence of zero-valent iron nanoparticles on nitrate removal by Paracoccus sp.

PubMed

Liu, Yan; Li, Shibin; Chen, Zuliang; Megharaj, Mallavarapu; Naidu, Ravi

2014-08-01

Nitrate contamination in drinking water is a major threat to public health. This study investigated the efficiency of denitrification of aqueous solutions in the co-presence of synthesized nanoscale zero-valent iron (nZVI; diameter: 20-80 nm) and a previously isolated Paracoccus sp. strain YF1. Various influencing factors were studied, such as oxygen, pH, temperature, and anaerobic corrosion products (Fe(2+), Fe(3+) and Fe3O4). With slight toxicity to the strain, nZVI promoted denitrification efficiency by providing additional electron sources under aerobic conditions. For example, 50 mg L(-1) nZVI increased the nitrate removal efficiency from 66.9% to 85.2%. However, a high concentration of nZVI could lead to increased production of Fe(2+), a toxic ion which could compromise the removal efficiency. Kinetic studies suggest that denitrification by both free cells, and nZVI-amended cells fitted well to the zero-order model. Temperature and pH are the major factors affecting nitrate removal and cell growth, with or without the presence of nZVI. In this study, nitrate removal and cell growth increased in the pH range of 6.5-8.0, and temperature range of 25-35 °C. These conditions favor the growth of the strain, which dominated denitrification in all scenarios involved. As for anaerobic corrosion products, compared with Fe(2+) and Fe(3+), Fe3O4 promoted denitrification by serving as an electron donor. Finally, scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS) and X-ray diffraction (XRD) confirmed attachments of nZVI on the surface of the cell, and the formation of iron oxides. This study indicated that, as an electron donor source with minimal cellular toxicity, nZVI could be used to promote denitrification efficiency under biotic conditions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Potential denitrification and nitrous oxide production in the sediments of the Seine River Drainage Network (France).

PubMed

Garnier, Josette A; Mounier, Emmanuelle M; Laverman, Anniet M; Billen, Gilles F

2010-01-01

To investigate bottom sediment denitrification at the scale of the Seine drainage network, a semi-potential denitrification assay was used in which river sediments (and riparian soils) were incubated for a few hours under anaerobic conditions with non limiting nitrate concentrations. This method allowed the nitrous oxide (N(2)O) concentration in the headspace, as well as the nitrate, nitrite, and ammonium concentrations to be determined during incubation. The rates at which nitrate decreased and N(2)O increased were then used to assess the potential denitrification activity and associated N(2)O production in the Seine River Basin. We observed a longitudinal pattern characterized by a significant increase of the potential rate of denitrification from upstream sectors to large downstream rivers (orders 7-8), from approximately 3.3 to 9.1 microg NO(3)(-)-N g(-1) h(-1), respectively, while the N(2)O production rates was the highest both in headwaters and in large order rivers (0.14 and 0.09 N(2)O-N g(-1) h(-1), respectively) and significantly lower in the intermediate sectors (0.01 and 0.03 N(2)O-N g(-1) h(-1)). Consequently, the ratio N(2)O production:NO(3) reduction was found to reach 5% in headstreams, whereas it averaged 1.2% in the rest of the drainage network, an intermediate percentage being found for the riparian soils. Finally, the ignition loss of sediments, together with other redundant variables (particulate organic carbon content: g C 100 g(-1) dry weight [dw], moisture: g water 100 g(-1) dw, sediment size <50 mum: g material size <50 mum 100 g(-1) dw) were found to control these activities. However, the biodegradability of organic matter must be measured to better understand the factor controlling denitrification and its associated N(2)O production.

Year-round N2O production by benthic NOx reduction in a monomictic south-alpine lake

NASA Astrophysics Data System (ADS)

Freymond, C. V.; Wenk, C. B.; Frame, C. H.; Lehmann, M. F.

2013-12-01

Nitrous oxide (N2O) is a potent greenhouse gas, generated through microbial nitrogen (N) turnover processes, such as nitrification, nitrifier denitrification, and denitrification. Previous studies quantifying natural sources have mainly focused on soils and the ocean, but the potential role of terrestrial water bodies in the global N2O budget has been widely neglected. Furthermore, the biogeochemical controls on the production rates and the microbial pathways that produce benthic N2O in lakes are essentially unknown. In this study, benthic N2O fluxes and the contributions of the microbial pathways that produce N2O were assessed using 15N label flow-through sediment incubations in the eutrophic, monomictic south basin of Lake Lugano in Switzerland. The sediments were a significant source of N2O throughout the year, with production rates ranging between 140 and 2605 nmol N2O h-1 m-2, and the highest observed rates coinciding with periods of water column stratification and stably anoxic conditions in the overlying bottom water. Nitrate (NO3-) reduction via denitrification was found to be the major N2O production pathway in the sediments under both oxygen-depleted and oxygen-replete conditions in the overlying water, while ammonium oxidation did not contribute significantly to the benthic N2O flux. A marked portion (up to 15%) of the total NO3- consumed by denitrification was reduced only to N2O, without complete denitrification to N2. These fluxes were highest when the bottom water had stabilized to a low-oxygen state, in contrast with the notion that stable anoxia is particularly conducive to complete denitrification without accumulation of N2O. This study provides evidence that lake sediments are a significant source of N2O to the overlying water and may produce large N2O fluxes to the atmosphere during seasonal mixing events.

Regional oxygen reduction and denitrification rates in groundwater from multi-model residence time distributions, San Joaquin Valley, USA

DOE PAGES

Green, Christopher T.; Jurgens, Bryant C.; Zhang, Yong; ...

2016-05-14

Rates of oxygen and nitrate reduction are key factors in determining the chemical evolution of groundwater. Little is known about how these rates vary and covary in regional groundwater settings, as few studies have focused on regional datasets with multiple tracers and methods of analysis that account for effects of mixed residence times on apparent reaction rates. This study provides insight into the characteristics of residence times and rates of O 2 reduction and denitrification (NO 3 – reduction) by comparing reaction rates using multi-model analytical residence time distributions (RTDs) applied to a data set of atmospheric tracers of groundwatermore » age and geochemical data from 141 well samples in the Central Eastern San Joaquin Valley, CA. The RTD approach accounts for mixtures of residence times in a single sample to provide estimates of in-situ rates. Tracers included SF 6, CFCs, 3H, He from 3H (tritiogenic He), 14C, and terrigenic He. Parameter estimation and multi-model averaging were used to establish RTDs with lower error variances than those produced by individual RTD models. The set of multi-model RTDs was used in combination with NO 3 – and dissolved gas data to estimate zero order and first order rates of O 2 reduction and denitrification. Results indicated that O 2 reduction and denitrification rates followed approximately log-normal distributions. Rates of O 2 and NO 3 – reduction were correlated and, on an electron milliequivalent basis, denitrification rates tended to exceed O 2 reduction rates. Estimated historical NO 3 – trends were similar to historical measurements. Here, results show that the multi-model approach can improve estimation of age distributions, and that relatively easily measured O 2 rates can provide information about trends in denitrification rates, which are more difficult to estimate.« less

Dynamic modeling of nitrogen losses in river networks unravels the coupled effects of hydrological and biogeochemical processes

USGS Publications Warehouse

Alexander, Richard B.; Böhlke, John Karl; Boyer, Elizabeth W.; David, Mark B.; Harvey, Judson W.; Mulholland, Patrick J.; Seitzinger, Sybil P.; Tobias, Craig R.; Tonitto, Christina; Wollheim, Wilfred M.

2009-01-01

The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly equally to seasonal and stream-size related variations in the percentage of the stream nitrate flux removed in each watershed.

Marine N2O Emissions From Nitrification and Denitrification Constrained by Modern Observations and Projected in Multimillennial Global Warming Simulations

NASA Astrophysics Data System (ADS)

Battaglia, G.; Joos, F.

2018-01-01

Nitrous oxide (N2O) is a potent greenhouse gas (GHG) and ozone destructing agent; yet global estimates of N2O emissions are uncertain. Marine N2O stems from nitrification and denitrification processes which depend on organic matter cycling and dissolved oxygen (O2). We introduce N2O as an obligate intermediate product of denitrification and as an O2-dependent by-product from nitrification in the Bern3D ocean model. A large model ensemble is used to probabilistically constrain modern and to project marine N2O production for a low (Representative Concentration Pathway (RCP)2.6) and high GHG (RCP8.5) scenario extended to A.D. 10,000. Water column N2O and surface ocean partial pressure N2O data serve as constraints in this Bayesian framework. The constrained median for modern N2O production is 4.5 (±1σ range: 3.0 to 6.1) Tg N yr-1, where 4.5% stems from denitrification. Modeled denitrification is 65.1 (40.9 to 91.6) Tg N yr-1, well within current estimates. For high GHG forcing, N2O production decreases by 7.7% over this century due to decreasing organic matter export and remineralization. Thereafter, production increases slowly by 21% due to widespread deoxygenation and high remineralization. Deoxygenation peaks in two millennia, and the global O2 inventory is reduced by a factor of 2 compared to today. Net denitrification is responsible for 7.8% of the long-term increase in N2O production. On millennial timescales, marine N2O emissions constitute a small, positive feedback to climate change. Our simulations reveal tight coupling between the marine carbon cycle, O2, N2O, and climate.

Temperature response of denitrification rate and greenhouse gas production in agricultural river marginal wetland soils.

PubMed

Bonnett, S A F; Blackwell, M S A; Leah, R; Cook, V; O'Connor, M; Maltby, E

2013-05-01

Soils are predicted to exhibit significant feedback to global warming via the temperature response of greenhouse gas (GHG) production. However, the temperature response of hydromorphic wetland soils is complicated by confounding factors such as oxygen (O2 ), nitrate (NO3-) and soil carbon (C). We examined the effect of a temperature gradient (2-25 °C) on denitrification rates and net nitrous oxide (N2 O), methane (CH4 ) production and heterotrophic respiration in mineral (Eutric cambisol and Fluvisol) and organic (Histosol) soil types in a river marginal landscape of the Tamar catchment, Devon, UK, under non-flooded and flooded with enriched NO3- conditions. It was hypothesized that the temperature response is dependent on interactions with NO3--enriched flooding, and the physicochemical conditions of these soil types. Denitrification rate (mean, 746 ± 97.3 μg m(-2)  h(-1) ), net N2 O production (mean, 180 ± 26.6 μg m(-2)  h(-1) ) and net CH4 production (mean, 1065 ± 183 μg m(-2)  h(-1) ) were highest in the organic Histosol, with higher organic matter, ammonium and moisture, and lower NO3- concentrations. Heterotrophic respiration (mean, 127 ± 4.6 mg m(-2)  h(-1) ) was not significantly different between soil types and dominated total GHG (CO2 eq) production in all soil types. Generally, the temperature responses of denitrification rate and net N2 O production were exponential, whilst net CH4 production was unresponsive, possibly due to substrate limitation, and heterotrophic respiration was exponential but limited in summer at higher temperatures. Flooding with NO3- increased denitrification rate, net N2 O production and heterotrophic respiration, but a reduction in net CH4 production suggests inhibition of methanogenesis by NO3- or N2 O produced from denitrification. Implications for management and policy are that warming and flood events may promote microbial interactions in soil between distinct microbial communities and increase denitrification of excess NO3- with N2 O production contributing to no more than 50% of increases in total GHG production. © 2013 Blackwell Publishing Ltd.

Feasibility of two low-cost organic substrates for inducing denitrification in artificial recharge ponds: Batch and flow-through experiments.

PubMed

Grau-Martínez, Alba; Torrentó, Clara; Carrey, Raúl; Rodríguez-Escales, Paula; Domènech, Cristina; Ghiglieri, Giorgio; Soler, Albert; Otero, Neus

2017-03-01

Anaerobic batch and flow-through experiments were performed to assess the capacity of two organic substrates to promote denitrification of nitrate-contaminated groundwater within managed artificial recharge systems (MAR) in arid or semi-arid regions. Denitrification in MAR systems can be achieved through artificial recharge ponds coupled with a permeable reactive barrier in the form of a reactive organic layer. In arid or semi-arid regions, short-term efficient organic substrates are required due to the short recharge periods. We examined the effectiveness of two low-cost, easily available and easily handled organic substrates, commercial plant-based compost and crushed palm tree leaves, to determine the feasibility of using them in these systems. Chemical and multi-isotopic monitoring (δ 15 N NO3 , δ 18 O NO3 , δ 34 S SO4 , δ 18 O SO4 ) of the laboratory experiments confirmed that both organic substrates induced denitrification. Complete nitrate removal was achieved in all the experiments with a slight transient nitrite accumulation. In the flow-through experiments, ammonium release was observed at the beginning of both experiments and lasted longer for the experiment with palm tree leaves. Isotopic characterisation of the released ammonium suggested ammonium leaching from both organic substrates at the beginning of the experiments and pointed to ammonium production by DNRA for the palm tree leaves experiment, which would only account for a maximum of 15% of the nitrate attenuation. Sulphate reduction was achieved in both column experiments. The amount of organic carbon consumed during denitrification and sulphate reduction was 0.8‰ of the total organic carbon present in commercial compost and 4.4% for the palm tree leaves. The N and O isotopic fractionation values obtained (ε N and ε O ) were -10.4‰ and -9.0‰ for the commercial compost (combining data from both batch and column experiments), and -9.9‰ and -8.6‰ for the palm tree column, respectively. Both materials showed a satisfactory capacity for denitrification, but the palm tree leaves gave a higher denitrification rate and yield (amount of nitrate consumed per amount of available C) than commercial compost. Copyright © 2017 Elsevier B.V. All rights reserved.

Monitoring induced denitrification in an artificial aquifer recharge system.

NASA Astrophysics Data System (ADS)

Grau-Martinez, Alba; Torrentó, Clara; Folch, Albert; Domènech, Cristina; Otero, Neus; Soler, Albert

2014-05-01

As demands on groundwater increase, artificial recharge is becoming a common method for enhancing groundwater supply. The Llobregat River is a strategic water supply resource to the Barcelona metropolitan area (Catalonia, NE Spain). Aquifer overexploitation has leaded to both a decrease of groundwater level and seawater intrusion, with the consequent deterioration of water quality. In the middle section of the aquifer, in Sant Vicenç del Horts, decantation and infiltration ponds recharged by water from the Llobregat River (highly affected from wastewater treatment plant effluents), were installed in 2007, in the framework of the ENSAT Life+ project. At the bottom of the infiltration pond, a vegetal compost layer was installed to promote the growth of bacteria, to induce denitrification and to create favourable conditions for contaminant biodegradation. This layer consists on a mixture of compost, aquifer material, clay and iron oxide. Understanding the fate of contaminants, such as nitrate, during artificial aquifer recharge is required to evaluate the impact of artificial recharge in groundwater quality. In order to distinguish the source of nitrate and to evaluate the capability of the organic reactive layer to induce denitrification, a multi-isotopic approach coupled with hydrogeochemical data was performed. Groundwater samples, as well as river samples, were sampled during artificial and natural recharge periods. The isotopic analysis included: δ15N and δ18O of dissolved nitrate, δ34S and δ18O of dissolved sulphate, δ13C of dissolved inorganic carbon, and δ2H and δ18O of water. Dissolved nitrate isotopic composition (δ15NNO3 from +9 to +21 o and δ18ONO3 from +3 to +16 ) demonstrated that heterotrophic denitrification induced by the reactive layer was taking place during the artificial recharge periods. An approximation to the extent of nitrate attenuation was calculated, showing a range between 95 and 99% or between 35 and 45%, by using the extreme literature ɛN values of -4o and -22o respectively (Aravena and Robertson, 1998; Pauwels et al., 2000). Ongoing denitrification batch experiments will allow us to determine the specific nitrogen and oxygen isotopic fractionation induced by the organic reactive layer, in order to estimate more precisely the extent of denitrification during artificial aquifer recharge. These results confirmed that the reactive layer induces denitrification in the recharge ponds area, proving the usefulness of an isotopic approach to characterize water quality improvement occurring during artificial aquifer recharge. References 1. Aravena, R., Robertson, W.D., 1998. Use of multiple isotope tracers to evaluate denitrification in ground water: Study of nitrate from a large-flux septic system plume. Ground Water, 36(6): 975-982. 2. Pauwels, H., J.C., Kloppmann, W., 2000. Denitrification and mixing in a schist aquifer: Influence on water chemistry and isotopes. Chemical Geology, 168(3-4): 307-324. Acknowledgment This study was supported by the projects CGL2011-29975-C04-01 from the Spanish Government, 2009SGR-00103 from the Catalan Government and ENPI/2011/280-008 from the European Commission. Please fill in your abstract text.

Shallow groundwater denitrification capacity at three contrasting hydrogeological environments in Ireland

NASA Astrophysics Data System (ADS)

Mofizur Rahman Jahangir, Mohammad; Johnston, Paul; Khalil, Mohammad Ibrahim; Richards, Karl

2010-05-01

Denitrification may be regarded as the dominant nitrate removal or attenuation process in shallow groundwater. A major concern arising from the denitrification process is that it not only serves as a natural pathway for excess NO3- removal but its intermediate product, N2O, is a potent greenhouse gas. A groundwater monitoring network was established on grazed grassland at research farms at Johnstown Castle (JC) and Solohead (SH) on tillage at Oak Park (OP) in Ireland, to investigate the denitrification capacity and N2O:(N2O+N2) ratio within the shallow groundwater zone. The geology of this zone at the 3 sites was i) JC: sand and gravel intermixed with clay, ii) SH: silt and gravel intermixed with dense clay and iii) OP: dense gravel with interbedded clays. Average groundwater table was respectively 3.2, 2.4 and 4.0 m below ground level. Ten piezometers of 50 mm ID with 2 m screen sections were installed at 3.5-6.0 m below ground level using a rotary air drilling method at the three sites. Groundwater sampling was carried out monthly for 6 months (February to July, 2009) using a bladder pump following the USEPA low flow sampling procedures. Dissolved groundwater N2O was separated by degassing groundwater in a sealed serum bottle (160ml) using high purity He (water:He = 3:1) and the collected headspace equilibrium gas was analyzed on a Varian gas chromatograph. The N2/Ar ratio, measured using a Membrane Inlet Mass Spectrometer, was used to estimate the denitrified N2 concentrations. The mean NO3-N concentrations were 7.0, 2.5 and 11.0 mg L-1 in JC, SH and OP, respectively. Ground water dissolved N2O concentrations ranged from 0.01 to 0.05, 0.01 to 0.06 and 0.002 to 0.06 mg L-1, with corresponding mean values of 0.03, 0.02, 0.02 mg N.L-1 in JC, SH and OP, respectively. The mean values for total denitrification (N2O+N2) were 1.94, 1.03 and 0.38 mg N.L-1, which accounted for 22, 29 and 3% losses of total NO3- -N in JC, SH and OP, respectively. The higher denitrification measured on the grassland compared to tillage is most likely related to the hydrogeological conditions e.g. DOC, DO and redox-potential rather than land-use. More importantly, the mean N2O:N2O+N2 ratios, being 0.01, 0.02 and 0.05, respectively in JC, SH and OP indicated that 95-99% of total denitrification was molecular N2 (98-99% in grassland and 95% in tillage farm). With respect to temporal changes, denitrification losses were higher in May in grassland systems and in April in tillage farming systems. Shallow groundwater denitrification appeared to be an important process in reducing NO3- , with low N2O concentrations indicating low losses of this greenhouse gas to the atmosphere upon discharging to surface water.

Temperature Coefficient for Modeling Denitrification in Surface Water Sediments Using the Mass Transfer Coefficient

Treesearch

T. W. Appelboom; G. M. Chescheir; R. W. Skaggs; J. W. Gilliam; Devendra M. Amatya

2006-01-01

Watershed modeling has become an important tool for researchers with the high costs of water quality monitoring. When modeling nitrate transport within drainage networks, denitrification within the sediments needs to be accounted for. Birgand et. al. developed an equation using a term called a mass transfer coefficient to mathematically describe sediment...

Diversity and Abundance of the Denitrifying Microbiota in the Sediment of Eastern China Marginal Seas and the Impact of Environmental Factors.

PubMed

Gao, Minghong; Liu, Jiwen; Qiao, Yanlu; Zhao, Meixun; Zhang, Xiao-Hua

2017-04-01

Investigating the environmental influence on the community composition and abundance of denitrifiers in marine sediment ecosystem is essential for understanding of the ecosystem-level controls on the biogeochemical process of denitrification. In the present study, nirK-harboring denitrifying communities in different mud deposit zones of eastern China marginal seas (ECMS) were investigated via clone library analysis. The abundance of three functional genes affiliated with denitrification (narG, nirK, nosZ) was assessed by fluorescent quantitative PCR. The nirK-harboring microbiota were dominated by a few operational taxonomic units (OTUs), which were widely distributed in different sites with each site harboring their unique phylotypes. The mean abundance of nirK was significantly higher than that of narG and nosZ genes, and the abundance of narG was higher than that of nosZ. The inconsistent abundance profile of different functional genes along the process of denitrification might indicate that nitrite reduction occurred independently of denitrification in the mud deposit zones of ECMS, and sedimentary denitrification was accomplished by cooperation of different denitrifying species rather than a single species. Such important information would be missed when targeting only a single denitrifying functional gene. Analysis of correlation between abundance ratios and environmental factors revealed that the response of denitrifiers to environmental factors was not invariable in different mud deposit zones. Our results suggested that a comprehensive analysis of different denitrifying functional genes may gain more information about the dynamics of denitrifying microbiota in marine sediments.

Effects of residual organics in municipal wastewater on hydrogenotrophic denitrifying microbial communities.

PubMed

Xing, Wei; Li, Jinlong; Li, Peng; Wang, Chong; Cao, Yanan; Li, Desheng; Yang, Yunfeng; Zhou, Jizhong; Zuo, Jiane

2018-03-01

Hydrogenotrophic denitrification is promising for tertiary nitrogen removal from municipal wastewater. To reveal the influence of residual organics in municipal wastewater on hydrogenotrophic denitrifiers, we adopted high-throughput 16S rRNA gene amplicon sequencing to examine microbial communities in hydrogenotrophic denitrification enrichments. Using effluent from a municipal wastewater treatment plant as water source, COD, nitrate and pH were controlled the same except for a gradient of biodegradable carbon (i.e., primary effluent (PE), secondary effluent (SE), or combined primary and secondary effluent (CE)). Inorganic synthetic water (IW) was used as a control. Hydrogenophaga, a major facultative autotroph, accounted for 17.1%, 5.3%, 32.7% and 12.9% of the sequences in PE, CE, SE and IW, respectively, implicating that Hydrogenophaga grew well with or without organics. Thauera, which contains likely obligate autotrophic denitrifiers, appeared to be the most dominant genera (23.6%) in IW and accounted for 2.5%, 4.6% and 8.9% in PE, CE and SE, respectively. Thermomonas, which is related to heterotrophic denitrification, accounted for 4.2% and 7.9% in PE and CE fed with a higher content of labile organics, respectively. In contrast, Thermomonas was not detected in IW and accounted for only 0.6% in SE. Our results suggest that Thermomonas are more competitive than Thauera in hydrogenotrophic denitrification with biodegradable organics. Moreover, facultative autotrophic denitrifiers, Hydrogenophaga, are accommodating to residual organic in effluent wastewater, thus we propose that hydrogenotrophic denitrification is amenable for tertiary nitrogen removal. Copyright © 2017. Published by Elsevier B.V.

Simultaneous methanogenesis and denitrification of pretreated effluents from a fish canning industry.

PubMed

Mosquera-Corral, A; Sánchez, M; Campos, J L; Méndez, R; Lema, J M

2001-02-01

A lab-scale hybrid upflow sludge bed-filter (USBF) reactor was employed to carry out methanogenesis and denitrification of the effluent from an anaerobic industrial reactor (EAIR) in a fish canning industry. The reactor was initially inoculated with methanogenic sludge and there were two different operational steps. During the first step (Step I: days 1-61), the methanogenic process was carried out at organic loading rates (OLR) of 1.0-1.25 g COD l-1 d-1 reaching COD removal percentages of 80%. During the second step (Step II: days 62-109) nitrate was added as KNO3 to the industrial effluent and the OLR was varied between 1.0 and 1.25 g COD l-1 d-1. Two different nitrogen loads of 0.10 and 0.22 g NO3(-)-N l-1 d-1 were applied and these led to nitrogen removal percentages of around 100% in both cases and COD removal percentages of around 80%. Carbon to nitrogen ratio (C:N) in the influent was maintained at 2.0 and eventually it was increased to 3.0, by means of glucose addition, to control the denitrification process. From these results it is possible to establish that wastewater produced in a fish canning industry can be used as a carbon source for denitrification and that denitrifying microorganisms were present in the initially methanogenic sludge. Biomass productions of 0.23 and 0.61 g VSS:g TOC fed for Steps I and II, respectively, were calculated from carbon global balances, showing an increase in biomass growth due to denitrification.

Physical Controls on Biogeochemical Processes in Intertidal Zones of Beach Aquifers

NASA Astrophysics Data System (ADS)

Heiss, James W.; Post, Vincent E. A.; Laattoe, Tariq; Russoniello, Christopher J.; Michael, Holly A.

2017-11-01

Marine ecosystems are sensitive to inputs of chemicals from submarine groundwater discharge. Tidally influenced saltwater-freshwater mixing zones in beach aquifers can host biogeochemical transformations that modify chemical loads prior to discharge. A numerical variable-density groundwater flow and reactive transport model was used to evaluate the physical controls on reactivity for mixing-dependent and mixing-independent reactions in beach aquifers, represented as denitrification and sulfate reduction, respectively. A sensitivity analysis was performed across typical values of tidal amplitude, hydraulic conductivity, terrestrial freshwater flux, beach slope, dispersivity, and DOC reactivity. For the model setup and conditions tested, the simulations demonstrate that denitrification can remove up to 100% of terrestrially derived nitrate, and sulfate reduction can transform up to 8% of seawater-derived sulfate prior to discharge. Tidally driven mixing between saltwater and freshwater promotes denitrification along the boundary of the intertidal saltwater circulation cell in pore water between 1 and 10 ppt. The denitrification zone occupies on average 49% of the mixing zone. Denitrification rates are highest on the landward side of the circulation cell and decrease along circulating flow paths. Reactivity for mixing-dependent reactions increases with the size of the mixing zone and solute supply, while mixing-independent reactivity is controlled primarily by solute supply. The results provide insights into the types of beaches most efficient in altering fluxes of chemicals prior to discharge and could be built upon to help engineer beaches to enhance reactivity. The findings have implications for management to protect coastal ecosystems and the estimation of chemical fluxes to the ocean.

Understanding the Spatio-Temporal Dynamics of Denitrification in an Oregon Salt Marsh

NASA Astrophysics Data System (ADS)

Moon, J. B.; Stecher, H. A.; DeWitt, T.; Nahlik, A.; Fennessy, M. S.; Michael, L.; Regutti, R.; Mckane, R.; Marois, D.; Naithani, K. J.

2016-12-01

Salt marshes are highly susceptible to a range of climate change effects (e.g., sea-level rise, salinity changes, storm severity, shifts in vegetation across watershed). It is unclear how these effects will alter the spatial and temporal dynamics of denitrification, a potential pathway of nitrogen interception and removal from adjacent estuaries. Our overall objective is to determine whether salt marshes in the Pacific Northwest act as sources or sinks of nitrogen to estuaries, and to be able to predict changes in these dynamics under future climate scenarios. We have built a probabilistic denitrification model based on observations from a salt marsh in the Yaquina Estuary (Newport, Oregon). We observed a non-linear relationship between denitrification rates and distance to the marsh-upland interface and soil nitrate concentrations, which are indicators of nitrate delivery flow paths from upslope red alder. We also modeled spatial variability in oxygen availability as a function of elevation, which affects inundation period, and distance to channel, which affects the saturation period through the dewatering rate. Simulations suggest denitrification "hot spots" occur in mid-marsh locations, where both nitrate availability and inundation periods are maximized. Once marsh accretion is outpaced, sea level rise will likely reduce salt marsh area due to steep adjacent uplands that limit marsh retreat, and increase inundation duration near the marsh-upland interface. Expansion of red alder cover is concurrently expected to increase nitrate availability to downslope ecosystems. Taking these effects together, our future scenario simulations suggest a movement of "hot-spots" towards the marsh-upland boundary.

Summer nitrate uptake and denitrification in an upper Mississippi River backwater lake: The role of rooted aquatic vegetation

USGS Publications Warehouse

Kreiling, Rebecca M.; Richardson, W.B.; Cavanaugh, J.C.; Bartsch, L.A.

2011-01-01

In-stream nitrogen processing in the Mississippi River has been suggested as one mechanism to reduce coastal eutrophication in the Gulf of Mexico. Aquatic macrophytes in river channels and flood plain lakes have the potential to temporarily remove large quantities of nitrogen through assimilation both by themselves and by the attached epiphyton. In addition, rooted macrophytes act as oxygen pumps, creating aerobic microsites around their roots where coupled nitrification-denitrification can occur. We used in situ 15N-NO3- tracer mesocosm experiments to measure nitrate assimilation rates for macrophytes, epiphyton, and microbial fauna in the sediment in Third Lake, a backwater lake of the upper Mississippi River during June and July 2005. We measured assimilation over a range of nitrate concentrations and estimated a nitrate mass balance for Third Lake. Macrophytes assimilated the most nitrate (29.5 mg N m-2 d-1) followed by sediment microbes (14.4 mg N m-2 d-1) and epiphytes (5.7 mg N m-2d-1. Assimilation accounted for 6.8% in June and 18.6% in July of total nitrate loss in the control chambers. However, denitrification (292.4 mg N m-2 d-1) is estimated to account for the majority (82%) of the nitrate loss. Assimilation and denitrification rates generally increased with increasing nitrate concentration but denitrification rates plateaued at about 5 mg N L-1. This suggests that backwaters have the potential to remove a relatively high amount of nitrate but will likely become saturated if the load becomes too large. ?? 2010 US Government.

Hydrogeologic setting and potential for denitrification in ground water, coastal plain of southern Maryland

USGS Publications Warehouse

Krantz, David E.; Powars, David S.

2000-01-01

The types and distribution of Coastal Plain sediments in the Patuxent River Basin may contribute to relatively low concentrations of nitrate (typically less than 1 milligram per liter) in stream base flow because of the chemical reduction of dissolved nitrate (denitrification) in ground water. Water chemistry data from synoptic stream base-flow surveys in the Patuxent River Basin show higher dissolved nitrate concentrations in the Piedmont than in the Coastal Plain section of the watershed. Stream base flow reflects closely the chemistry of ground water discharging from the surficial (unconfined) aquifer to the stream. Because land use in the sampled subbasins is virtually the same in each section, differences in the physical and geochemical characteristics of the surficial aquifer may explain the observed differences in water chemistry. One possible cause of lower nitrate concentrations in the Coastal Plain is denitrification within marine sediments that contain chemically reduced compounds. During denitrification, the oxygen atoms on the nitrate (N03-) molecule are transferred to a reduced compound and N gas is produced. Organic carbon and ferrous iron (Fe2+), derived from the dissolution of minerals such as pyrite (FeS2) and glauconite (an iron aluminosilicate clay), can act as reducing substrates; these reduced chemical species are common in the marine and estuarine deposits in Southern Maryland. The spatial distribution of geologic units and their lithology (sediment type) has been used to create a map of the potential for denitrification of ground water in the surficial aquifer of the Coastal Plain in Southern Maryland.

Effect of organic loading on nitrification and denitrification in a marine sediment microcosm

USGS Publications Warehouse

Caffrey, J.M.; Sloth, N.P.; Kaspar, H.F.; Blackburn, T.H.

1993-01-01

The effects of organic additions on nitrification and denitrification were examined in sediment microcosms. The organic material, heat killed yeast, had a C/N ratio of 7.5 and was added to sieved, homogenized sediments. Four treatments were compared: no addition (control, 30 g dry weight (dw) m-2 mixed throughout the 10 cm sediment column (30 M), 100 g dw m-2 mixed throughout sediments (100M), and 100 g dw m-2 mixed into top 1 cm (100S). After the microcosms had been established for 7-11 days, depth of O2 penetration, sediment-water fluxes and nitrification rates were measured. Nitrification rates were measured using three different techniques: N-serve and acetylene inhibition in intact cores, and nitrification potentials in slurries. Increased organic additions decreased O2 penetration from 2.7 to 0.2 mm while increasing both O2 consumption, from 30 to 70 mmol O2 m-2 d-1, and NO3- flux into sediments. Nitrification rates in intact cores were similar for the two methods. Highest rates occurred in the 30 M treatment, while the lowest rate was measured in the 100S treatment. Total denitrification rates (estimated from nitrification and nitrate fluxes) increased with increased organic addition, because of the high concentrations of NO3- (40 ??M) in the overlying water. The ratio of nitrification: denitrification was used as an indication of the importance of nitrification as the NO3- supply for denitrification. This ratio decreased from 1.55 to 0.05 with increased organic addition.

Large-scale controls on potential respiration and denitrification in riverine floodplains

PubMed Central

Welti, Nina; Bondar-Kunze, Elisabeth; Singer, Gabriel; Tritthart, Michael; Zechmeister-Boltenstern, Sophie; Hein, Thomas; Pinay, Gilles

2012-01-01

Restoration measures of deteriorated river ecosystems generally aim at increasing the spatial heterogeneity and connectivity of these systems in order to increase biodiversity and ecosystem stability. While this is believed to benefit overall ecological integrity, consequences of such restoration projects on biogeochemical processes per se (i.e. ecosystem functioning) in fluvial systems are rarely considered. We address these issues by evaluating the characteristics of surface water connection between side arms and the main river channel in a former braided river section and the role and degree of connectivity (i.e. duration of surface water connection) on the sediment biogeochemistry. We hypothesized that potential respiration and denitrification would be controlled by the degree of hydrological connectivity, which was increased after floodplain restoration. We measured potential microbial respiration (SIR) and denitrification (DEA) and compared a degraded floodplain section of the Danube River with a reconnected and restored floodplain in the same river section. Re-establishing surface water connection altered the controls on sediment microbial respiration and denitrification ultimately impacting potential microbial activities. Meta-variables were created to characterize the effects of hydrology, morphology, and the available carbon and nutrient pools on potential microbial processing. Mantel statistics and path analysis were performed and demonstrate a hierarchy where the effects of hydrology on the available substrates and microbial processing are mediated by the morphology of the floodplain. In addition, these processes are highest in the least connected sites. Surface water connection, mediated by morphology regulates the potential denitrification rate and the ratio of N2O to N2 emissions, demonstrating the effects of restoration in floodplain systems. PMID:23565037

Mixing effects on apparent reaction rates and isotope fractionation during denitrification in a heterogeneous aquifer

USGS Publications Warehouse

Green, Christopher T.; Böhlke, John Karl; Bekins, Barbara A.; Phillips, Steven P.

2010-01-01

Gradients in contaminant concentrations and isotopic compositions commonly are used to derive reaction parameters for natural attenuation in aquifers. Differences between field‐scale (apparent) estimated reaction rates and isotopic fractionations and local‐scale (intrinsic) effects are poorly understood for complex natural systems. For a heterogeneous alluvial fan aquifer, numerical models and field observations were used to study the effects of physical heterogeneity on reaction parameter estimates. Field measurements included major ions, age tracers, stable isotopes, and dissolved gases. Parameters were estimated for the O2 reduction rate, denitrification rate, O2 threshold for denitrification, and stable N isotope fractionation during denitrification. For multiple geostatistical realizations of the aquifer, inverse modeling was used to establish reactive transport simulations that were consistent with field observations and served as a basis for numerical experiments to compare sample‐based estimates of “apparent” parameters with “true“ (intrinsic) values. For this aquifer, non‐Gaussian dispersion reduced the magnitudes of apparent reaction rates and isotope fractionations to a greater extent than Gaussian mixing alone. Apparent and true rate constants and fractionation parameters can differ by an order of magnitude or more, especially for samples subject to slow transport, long travel times, or rapid reactions. The effect of mixing on apparent N isotope fractionation potentially explains differences between previous laboratory and field estimates. Similarly, predicted effects on apparent O2threshold values for denitrification are consistent with previous reports of higher values in aquifers than in the laboratory. These results show that hydrogeological complexity substantially influences the interpretation and prediction of reactive transport.

Selective Pressure of Temperature on Competition and Cross-Feeding within Denitrifying and Fermentative Microbial Communities

PubMed Central

Hanke, Anna; Berg, Jasmine; Hargesheimer, Theresa; Tegetmeyer, Halina E.; Sharp, Christine E.; Strous, Marc

2016-01-01

In coastal marine sediments, denitrification and fermentation are important processes in the anaerobic decomposition of organic matter. Microbial communities performing these two processes were enriched from tidal marine sediments in replicated, long term chemostat incubations at 10 and 25°C. Whereas denitrification rates at 25°C were more or less stable over time, at 10°C denitrification activity was unstable and could only be sustained either by repeatedly increasing the amount of carbon substrates provided or by repeatedly decreasing the dilution rate. Metagenomic and transcriptomic sequencing was performed at different time points and provisional whole genome sequences (WGS) and gene activities of abundant populations were compared across incubations. These analyses suggested that a temperature of 10°C selected for populations related to Vibrionales/Photobacterium that contributed to both fermentation (via pyruvate/formate lyase) and nitrous oxide reduction. At 25°C, denitrifying populations affiliated with Rhodobacteraceae were more abundant. The latter performed complete denitrification, and may have used carbon substrates produced by fermentative populations (cross-feeding). Overall, our results suggest that a mixture of competition—for substrates between fermentative and denitrifying populations, and for electrons between both pathways active within a single population –, and cross feeding—between fermentative and denitrifying populations—controlled the overall rate of denitrification. Temperature was shown to have a strong selective effect, not only on the populations performing either process, but also on the nature of their ecological interactions. Future research will show whether these results can be extrapolated to the natural environment. PMID:26779132

Draft genome sequence of Bacillus azotoformans MEV2011, a (Co-) denitrifying strain unable to grow with oxygen.

PubMed

Nielsen, Maja; Schreiber, Lars; Finster, Kai; Schramm, Andreas

2015-01-01

Bacillus azotoformans MEV2011, isolated from soil, is a microaerotolerant obligate denitrifier, which can also produce N2 by co-denitrification. Oxygen is consumed but not growth-supportive. The draft genome has a size of 4.7 Mb and contains key genes for both denitrification and dissimilatory nitrate reduction to ammonium.

Draft genome sequence of Bacillus azotoformans MEV2011, a (Co-) denitrifying strain unable to grow with oxygen.

PubMed

Nielsen, Maja; Schreiber, Lars; Finster, Kai; Schramm, Andreas

2014-01-01

Bacillus azotoformans MEV2011, isolated from soil, is a microaerotolerant obligate denitrifier, which can also produce N2 by co-denitrification. Oxygen is consumed but not growth-supportive. The draft genome has a size of 4.7 Mb and contains key genes for both denitrification and dissimilatory nitrate reduction to ammonium.

Draft genome sequence of Bacillus azotoformans MEV2011, a (Co-) denitrifying strain unable to grow with oxygen

PubMed Central

2014-01-01

Bacillus azotoformans MEV2011, isolated from soil, is a microaerotolerant obligate denitrifier, which can also produce N2 by co-denitrification. Oxygen is consumed but not growth-supportive. The draft genome has a size of 4.7 Mb and contains key genes for both denitrification and dissimilatory nitrate reduction to ammonium. PMID:25685261

Biological denitrification process based on the Fe(0)-carbon micro-electrolysis for simultaneous ammonia and nitrate removal from low organic carbon water under a microaerobic condition.

PubMed

Deng, Shihai; Li, Desheng; Yang, Xue; Xing, Wei; Li, Jinlong; Zhang, Qi

2016-11-01

A combined process between micro-electrolysis and biological denitrification (MEBD) using iron scraps and an activated carbon-based micro-electrolysis carrier was developed for nitrogen removal under a microaerobic condition. The process provided NH4(+)-N and total nitrogen (TN) removal efficiencies of 92.6% and 95.3%, respectively, and TN removal rate of 0.373±0.11kgN/(m(3)d) at corresponding DO of 1.0±0.1mg/L and HRT of 3h, and the optimal pH of 7.6-8.4. High-throughput sequencing analysis verified that dominant classes belonged to β-, α-, and γ-Proteobacteria, and Nitrospira. The dominant genera Hydrogenophaga and Sphaerotilus significantly increased during the operation, covering 13.2% and 6.1% in biofilms attached to the carrier in the middle of the reactor, respectively. Autotrophic denitrification contributed to >80% of the TN removal. The developed MEBD achieved efficient simultaneous nitrification and autotrophic denitrification, presenting significant potential for application in practical low organic carbon water treatment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Denitrification potential of riparian soils in relation to multiscale spatial environmental factors: a case study of a typical watershed, China.

PubMed

Wei, Jianbing; Feng, Hao; Cheng, Quanguo; Gao, Shiqian; Liu, Haiyan

2017-02-01

The objective of this study was to test the hypothesis that environmental regulators of riparian zone soil denitrification potential differ according to spatial scale within a watershed; consequently, a second objective was to provide spatial strategies for conserving and restoring the purification function of runoff in riparian ecosystems. The results show that soil denitrification in riparian zones was more heterogeneous at the profile scale than at the cross-section and landscape scales. At the profile scale, biogeochemical factors (including soil total organic carbon, total nitrogen, and nitrate-nitrogen) were the major direct regulators of the spatial distribution of soil denitrification enzyme activity (DEA). At the cross-section scale, factors included distance from river bank and vegetation density, while landscape-scale factors, including topographic index, elevation, and land use types, indirectly regulated the spatial distribution of DEA. At the profile scale, soil DEA was greatest in the upper soil layers. At the cross-section scale, maximum soil DEA occurred in the mid-part of the riparian zone. At the landscape scale, soil DEA showed an increasing trend towards downstream sites, except for those in urbanized areas.

Microbial community analysis in the autotrophic denitrification process using spent sulfidic caustic by denaturing gradient gel electrophoresis of PCR-amplified genes.

PubMed

Lee, J-H; Lee, S-M; Choi, G-C; Park, H-S; Kang, D-H; Park, J-J

2011-01-01

Spent sulfidic caustic (SSC) produced from petrochemical plants contains a high concentration of hydrogen sulfide and alkalinity, and some almost non-biodegradable organic compounds such as benzene, toluene, ethylbenzene and xylenes (BTEX). SSC is mainly incinerated with auxiliary fuel, leading to secondary pollution problems. The reuse of this waste is becoming increasingly important from economic and environmental viewpoints. To denitrify wastewater with low COD/N ratio, additional carbon sources are required. Thus, autotrophic denitrification has attracted increasing attention. In this study, SSC was injected as an electron donor for sulfur-based autotrophic denitrification in the modified Ludzack-Ettinger (MLE) process. The efficiencies of nitrification, COD, and total nitrogen (TN) removal were evaluated with varying SSC dosage. Adequate SSC injection exhibited stable autotrophic denitrification. No BTEX were detected in the monitored BTEX concentrations of the effluent. To analyse the microbial community of the MLE process, PCR-DGGE based on 16 S rDNA with EUB primers, TD primers and nirK gene with nirK primers was performed in order to elucidate the application of the MLE process to SSC.

Bio-electrochemical removal of nitrate from water and wastewater--a review.

PubMed

Ghafari, Shahin; Hasan, Masitah; Aroua, Mohamed Kheireddine

2008-07-01

Nitrates in different water and wastewater streams raised concerns due to severe impacts on human and animal health. Diverse methods are reported to remove nitrate from water streams which almost fail to entirely treat nitrate, except biological denitrification which is capable of reducing inorganic nitrate compounds to harmless nitrogen gas. Review of numerous studies in biological denitrification of nitrate containing water resources, aquaculture wastewaters and industrial wastewater confirmed the potential of this method and its flexibility towards the remediation of different concentrations of nitrate. The denitrifiers could be fed with organic and inorganic substrates which have different performances and subsequent advantages or disadvantages. Review of heterotrophic and autotrophic denitrifications with different food and energy sources concluded that autotrophic denitrifiers are more effective in denitrification. Autotrophs utilize carbon dioxide and hydrogen as the source of carbon substrate and electron donors, respectively. The application of this method in bio-electro reactors (BERs) has many advantages and is promising. However, this method is not so well established and documented. BERs provide proper environment for simultaneous hydrogen production on cathodes and appropriate consumption by immobilized autotrophs on these cathodes. This survey covers various designs and aspects of BERs and their performances.

Evaluation of gasoline-denatured ethanol as a carbon source for denitrification.

PubMed

Kazasi, Anna; Boardman, Gregory D; Bott, Charles B

2013-06-01

In this study concerning denitrification, the performance of three carbon sources, methanol (MeOH), ethanol (EtOH) and gasoline-denatured ethanol (dEtOH), was compared and evaluated on the basis of treatment efficiency, inhibition potential and cost. The gasoline denaturant considered here contained mostly aliphatic compounds and little of the components that typically boost the octane rating, such as benzene, toluene, ethylbenzene and xylenes. Results were obtained using three lab-scale SBRs operated at SRT of 12.0 +/- 0.9 days. After biomass was acclimated, denitrification rates with dEtOH were similar to those of EtOH (201 +/- 50 and 197 +/- 28 NO3-N/g MLVSS x d, respectively), and higher than those of MeOH (165 +/- 49 mg NO3-N/g MLVSS x d). The denaturant did not affect biomass production, nitrification or denitrification. Effluent soluble COD concentrations were always less than the analytical detection limit. Although the cost of dEtOH ($2.00/kg nitrate removed) was somewhat higher than that of methanol ($1.63/kg nitrate removed), the use of dEtOH is very promising and utilities will have to decide if it is worth paying a little extra to take advantage of its benefits.

Nitrogen reduction pathways in estuarine sediments: Influences of organic carbon and sulfide

NASA Astrophysics Data System (ADS)

Plummer, Patrick; Tobias, Craig; Cady, David

2015-10-01

Potential rates of sediment denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonium (DNRA) were mapped across the entire Niantic River Estuary, CT, USA, at 100-200 m scale resolution consisting of 60 stations. On the estuary scale, denitrification accounted for ~ 90% of the nitrogen reduction, followed by DNRA and anammox. However, the relative importance of these reactions to each other was not evenly distributed through the estuary. A Nitrogen Retention Index (NIRI) was calculated from the rate data (DNRA/(denitrification + anammox)) as a metric to assess the relative amounts of reactive nitrogen being recycled versus retained in the sediments following reduction. The distribution of rates and accompanying sediment geochemical analytes suggested variable controls on specific reactions, and on the NIRI, depending on position in the estuary and that these controls were linked to organic carbon abundance, organic carbon source, and pore water sulfide concentration. The relationship between NIRI and organic carbon abundance was dependent on organic carbon source. Sulfide proved the single best predictor of NIRI, accounting for 44% of its observed variance throughout the whole estuary. We suggest that as a single metric, sulfide may have utility as a proxy for gauging the distribution of denitrification, anammox, and DNRA.

Sulfur-based autotrophic denitrification with eggshell for nitrate-contaminated synthetic groundwater treatment.

PubMed

Xu, Yaxian; Chen, Nan; Feng, Chuanping; Hao, Chunbo; Peng, Tong

2016-12-01

Eggshell is considered to be a waste and a significant quantity of eggshell waste is generated from food processing, baking and hatching industries. In this study, the effect of different sulfur/eggshell (w/w) ratios and temperatures was investigated to evaluate the feasibility of the sulfur-based autotrophic denitrification with eggshell (SADE) process for nitrate removal. The results showed eggshell can maintain a neutral condition in a range of pH 7.05-7.74 in the SADE process, and remove 97% of nitrate in synthetic groundwater. Compared with oyster shell and limestone, eggshell was found to be a desirable alkaline material for sulfur-based autotrophic denitrification (SAD) with no nitrite accumulation and insignificant sulfate production. Denitrification reaction was found to follow the first-order kinetic models (R(2) > .9) having nitrate removal rate constants of 0.85 and 0.93 d(-1) for raw eggshell and boiled eggshell, respectively. Sulfur/eggshell ratio of 2:3 provided the best efficiency on nitrate removal. Nitrate was removed completely by the SADE process at a low temperature of 15°C. Eggshell could be used for the SAD process due to its good effect for nitrate removal from groundwater.

Arctic “ozone hole” in a cold volcanic stratosphere

PubMed Central

Tabazadeh, A.; Drdla, K.; Schoeberl, M. R.; Hamill, P.; Toon, O. B.

2002-01-01

Optical depth records indicate that volcanic aerosols from major eruptions often produce clouds that have greater surface area than typical Arctic polar stratospheric clouds (PSCs). A trajectory cloud–chemistry model is used to study how volcanic aerosols could affect springtime Arctic ozone loss processes, such as chlorine activation and denitrification, in a cold winter within the current range of natural variability. Several studies indicate that severe denitrification can increase Arctic ozone loss by up to 30%. We show large PSC particles that cause denitrification in a nonvolcanic stratosphere cannot efficiently form in a volcanic environment. However, volcanic aerosols, when present at low altitudes, where Arctic PSCs cannot form, can extend the vertical range of chemical ozone loss in the lower stratosphere. Chemical processing on volcanic aerosols over a 10-km altitude range could increase the current levels of springtime column ozone loss by up to 70% independent of denitrification. Climate models predict that the lower stratosphere is cooling as a result of greenhouse gas built-up in the troposphere. The magnitude of column ozone loss calculated here for the 1999–2000 Arctic winter, in an assumed volcanic state, is similar to that projected for a colder future nonvolcanic stratosphere in the 2010 decade. PMID:11854461

Numerical Simulations of SCR DeNOx System for a 660MW coal-fired power station

NASA Astrophysics Data System (ADS)

Yongqiang, Deng; Zhongming, Mei; Yijun, Mao; Nianping, Liu; Guoming, Yin

2018-06-01

Aimed at the selective catalytic reduction (SCR) DeNOx system of a 660 MW coal-fired power station, which is limited by low denitrification efficiency, large ammonia consumption and over-high ammonia escape rate, numerical simulations were conducted by employing STAR-CCM+ (CFD tool). The simulations results revealed the problems existed in the SCR DeNOx system. Aimed at limitations of the target SCR DeNOx system, factors affecting the denitrification performance of SCR, including the structural parameters and ammonia injected by the ammonia nozzles, were optimized. Under the optimized operational conditions, the denitrification efficiency of the SCR system was enhanced, while the ammonia escape rate was reduced below 3ppm. This study serves as references for optimization and modification of SCR systems.

In situ denitrification and DNRA rates in soils and underlying groundwater of an integrated constructed wetland

NASA Astrophysics Data System (ADS)

Mofizur Rahman Jahangir, Mohammad; Fenton, Owen; McAleer, Eoin; Carroll, Paul; Harrington, Rory; Johnston, Paul; Müller, Christoph; Richards, Karl

2015-04-01

Nitrogen (N) removal efficiency in constructed wetlands (CW) is low and again it does not in itself explain whether the removed N species are reactive or benign. Evaluation of environmental benefits of CW necessitates knowing N removal mechanisms and the fate of the removed N in such system. In situ denitrification and DNRA (dissimilatory nitrate reduction to ammonium) rates were measured in an earthen lined 5-cell integrated CW using 15N-enriched nitrate (NO3--N) push-pull method. Measurements were conducted in 2 groundwater depths (shallow- soils in CW bed; and deep- 4 m below CW soils) in 2 contrasting cells (high vs. low nutrient loads) of the CW. Denitrification (N¬2O-N + N2-N) and DNRA were the major NO3--N removal processes accounting together for 54-79% of the total biochemical removal of the applied NO3--N. Of which 14-17 and 40-68% were removed by denitrification and DNRA, respectively. Both the processes significantly differed with CW cells indicating that N transformations depend on the rate of nutrient loads in different cells. They were significantly higher in shallow than deep groundwater. Environmental conditions were favourable for both the processes (i.e. low dissolved oxygen and low redox potential, high dissolved organic carbon, high total carbon and high dissolved organic N) but DNRA rate was favoured over denitrification by high ambient NH4+ concentrations, reduced sulphide and low pH (5.9 - 7.0). Low pH might have limited denitrification to some extent to an incomplete state, being evident by a high N2O-N/(N2O-N+N2-N) ratio (0.35 ± 0.17, SE). Relatively higher N2O-N/(N2O-N+N2-N) ratio and higher DNRA rate over denitrification suggest that the end products of N transformations are reactive. This N2O can be consumed to N2 and/or emit to atmosphere directly and indirectly. The DNRA rate and accumulation of NH4+ indicated that CW is a net source of NH4+ in groundwater. Ammonium produced by DNRA can be fixed in soils and, when exchange sites are saturated, can flow to ground and surface waters. These results suggest that conventional input - output balance for N removal is misleading unless the removal mechanisms are fully understood and the fate of the removed N are known.

Protein Network of the Pseudomonas aeruginosa Denitrification Apparatus

PubMed Central

Borrero-de Acuña, José Manuel; Rohde, Manfred; Wissing, Josef; Jänsch, Lothar; Schobert, Max; Molinari, Gabriella; Timmis, Kenneth N.

2016-01-01

ABSTRACT Oxidative phosphorylation using multiple-component, membrane-associated protein complexes is the most effective way for a cell to generate energy. Here, we systematically investigated the multiple protein-protein interactions of the denitrification apparatus of the pathogenic bacterium Pseudomonas aeruginosa. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO3− → NO2− → NO → N2O → N2. Genetic experiments suggested that the nitric oxide reductase NorBC and the regulatory protein NosR are the nucleus of the denitrification protein network. We utilized membrane interactomics in combination with electron microscopy colocalization studies to elucidate the corresponding protein-protein interactions. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. The periplasmic nitrous oxide reductase NosZ is linked via NosR. The nitrate transporter NarK2, the nitrate regulatory system NarXL, various nitrite reductase maturation proteins, NirEJMNQ, and the Nos assembly lipoproteins NosFL were also found to be attached. A number of proteins associated with energy generation, including electron-donating dehydrogenases, the complete ATP synthase, almost all enzymes of the tricarboxylic acid (TCA) cycle, and the Sec system of protein transport, among many other proteins, were found to interact with the denitrification proteins. This deduced nitrate respirasome is presumably only one part of an extensive cytoplasmic membrane-anchored protein network connecting cytoplasmic, inner membrane, and periplasmic proteins to mediate key activities occurring at the barrier/interface between the cytoplasm and the external environment. IMPORTANCE The processes of cellular energy generation are catalyzed by large multiprotein enzyme complexes. The molecular basis for the interaction of these complexes is poorly understood. We employed membrane interactomics and electron microscopy to determine the protein-protein interactions involved. The well-investigated enzyme complexes of denitrification of the pathogenic bacterium Pseudomonas aeruginosa served as a model. Denitrification is one essential step of the universal N cycle and provides the bacterium with an effective alternative to oxygen respiration. This process allows the bacterium to form biofilms, which create low-oxygen habitats and which are a key in the infection mechanism. Our results provide new insights into the molecular basis of respiration, as well as opening a new window into the infection strategies of this pathogen. PMID:26903416

Small scale denitrification variability in riparian zones: Results from a high-resolution dataset

NASA Astrophysics Data System (ADS)

Gassen, Niklas; Knöller, Kay; Musolff, Andreas; Popp, Felix; Lüders, Tillmann; Stumpp, Christine

2017-04-01

Riparian zones are important compartments at the interface between groundwater and surface water where biogeochemical processes like denitrification are often enhanced. Nitrate loads of either groundwater entering a stream through the riparian zone or streamwater infiltrating into the riparian zone can be substantially reduced. These processes are spatially and temporally highly variable, making it difficult to capture solute variabilities, estimate realistic turnover rates and thus to quantify integral mass removal. A crucial step towards a more detailed characterization is to monitor solutes on a scale which adequately resemble the highly heterogeneous distribution and on a scale where processes occur. We measured biogeochemical parameters in a spatial high resolution within a riparian corridor of a German lowland river system over the course of one year. Samples were taken from three newly developed high-resolution multi-level wells with a maximum vertical resolution of 5 cm and analyzed for major ions, DOC and N-O isotopes. Sediment derived during installation of the wells was analyzed for specific denitrifying enzymes. Results showed a distinct depth zonation of hydrochemistry within the shallow alluvial aquifer, with a 1 m thick zone just below the water table with lower nitrate concentrations and EC values similar to the nearby river. Conservative parameters were consistent inbetween the three wells, but nitrate was highly variable. In addition, spots with low nitrate concentrations showed isotopic and microbial evidence for higher denitrification activities. The depth zonation was observed throughout the year, with stronger temporal variations of nitrate concentrations just below the water table compared to deeper layers. Nitrate isotopes showed a clear seasonal trend of denitrification activities (high in summer, low in winter). Our dataset gives new insight into river-groundwater exchange processes and shows the highly heterogeneous distribution of denitrification in riparian zones, both in time and space. With these new insights, we are able to improve our understanding of spatial scaling of denitrification processes. This leads to a better prediction and improved management strategies for buffer mechanisms in riparian zones.

Does Avicennia germinans expansion alter salt marsh nitrogen removal capacity?

NASA Astrophysics Data System (ADS)

Tatariw, C.; Kleinhuizen, A.; Rajan, S.; Flournoy, N.; Sobecky, P.; Mortazavi, B.

2017-12-01

Plant species expansion poses risks to ecosystem services through alterations to plant-microbiome interactions associated with changes to key microbial drivers such as organic carbon (C) substrates, nitrogen (N) availability, and rhizosphere-associated microbial communities. In the northern Gulf of Mexico (GOM), warming winter temperatures associated with climate change have promoted Avicennia germinans (black mangrove) expansion into salt marshes. To date, there is limited knowledge regarding the effects of mangrove expansion on vital ecosystem services such as N cycling in the northern GOM. We designed a field-based study to determine the potential effects of mangrove expansion on salt marsh N biogeochemical cycling in the Spartina alterniflora dominated Chandeleur Islands (LA, USA). We used a combination of process rate measurements and metadata to: 1) Determine the impact of mangrove expansion on salt marsh denitrification and dissimilatory nitrate reduction to ammonium (DNRA), with the goal of quantifying losses or gains in ecosystem services; and 2) identify the mechanisms driving changes in ecosystem services to improve predictions about the impacts of mangrove expansion on salt marsh functional resiliency. The pneumatophore root structure of A. germinans is efficient at delivering oxygen (O2) to sediment, which can promote coupled nitrification-denitrification and decrease sulfide inhibition. We hypothesized that increased sediment O2, when coupled with cooler soil temperatures caused by plant shading, will favor denitrification instead of the DNRA process. An increase in sediment O2, as well as higher N content of A. germinans litter, will also result in a shift in the microbial community. Initial findings indicated that the denitrification pathway dominates over DNRA regardless of vegetation type, with average denitrification rates of 30.1 µmol N kg-1 h-1 versus average DNRA rates of 8.5 µmol N kg-1 h-1. However, neither denitrification nor DNRA rates have differed between vegetation types. Additional results of the study will relate process rate measurements to sediment physiochemical characteristics and rhizosphere-associated microbial communities from both vegetation types to identify drivers of long term change in ecosystems services associated with mangrove expansion.

In Situ Groundwater Denitrification in the Riparian Zone of a Short-Rotation Woody Crop Experimental Watershed

NASA Astrophysics Data System (ADS)

Jeffers, J. B.; Jackson, C. R.; Rau, B.; Pringle, C. M.; Matteson, C.

2017-12-01

The southeastern United States has potential to become a major producer of short rotation woody crops (SRWC) for the production of biofuels, but this will require converting to more intensive forest management practices that will increase nitrate (NO3-) loading and alter nitrogen cycling in nearby freshwater ecosystems. Water quality monitoring in an experimental short-rotation woody crop watershed in the Coastal Plain of South Carolina has shown increased concentrations of NO3- in groundwater but no evidence of increased NO3- in riparian groundwater or surface waters. Forested riparian areas established as streamside management zones (SMZ) are known to act as buffers to surface water bodies by mitigating nutrients. The objectives of this study were to quantify denitrification by measuring dinitrogen (N2) and nitrous oxide (N2O) concentrations along groundwater flow paths and analyze relationships between denitrification estimates, nutrients, and water chemistry parameters. A network of piezometers has been established in the Fourmile Experimental Watershed at the Department of Energy - Savannah River Site. Water samples were collected monthly and were analyzed for concentrations of nutrients (temperature, specific conductivity, dissolved oxygen, pH, dissolved organic carbon) and dissolved gases (N2, Ar, N2O). Preliminary data showed greater dissolved N2O concentrations than dissolved N2 concentrations in groundwater. The ratios of N2O to combined end products of denitrification (N2O / N2O+N2) ranged from 0.33 to 0.99. Mean N2O+N2 concentrations were greater in groundwater samples in the SRWC plot and along the SMZ boundary than along the ephemeral stream within the riparian zone. Correlations between water chemistry parameters and N2 concentrations are indicative of known biogeochemical driving factors of denitrification. Continued monthly sampling will be coupled with analysis of nutrient concentrations (NO3-, NH4+, TN) to help determine transport and processing of NO3- and production of dissolved gases within the groundwater system. Use of hydrologic models combined with dissolved gas concentrations will provide estimates of denitrification rates and indirect gaseous emissions.

Denitrification and Phosphorus Sequestration in Restored Oyster Beds in the Indian River Lagoon, Florida, USA

NASA Astrophysics Data System (ADS)

Gallagher, S. M.; Schmidt, C. A.; Walters, L.

2016-12-01

In 2016, an algae bloom in the St. Lucie River in Florida led the governor to declare a state of emergency. The river is part of a connected system of estuaries along the Atlantic coast of Florida called the Indian River Lagoon (IRL). As with many estuaries around the world, nutrient loading in the IRL has led to periodic eutrophication. As a result, much research has been done to address nutrients in these systems. Previous estuary studies have related oyster restoration to denitrification and phosphorus sequestration in their bed sediment. To this point, these studies have been inconclusive, and have only focused on seasonal variation in nutrient cycling. In 2007, yearly oyster bed installation and restoration began in a study area in the IRL. By 2016, beds aged up to eleven years were available for sampling. This unique advantage allowed investigation of bed sediment and nutrient cycling over long periods of time. Sediment from the IRL was measured for organic matter, microbial weight, carbon, nitrogen, and phosphorus. Denitrification was measured using an acetylene block technique. A statistical analysis was used to find differences in sediment characteristics and denitrification between restored beds and control sites over time. In addition, sequencing of 16S rRNA DNA and a variety of denitrifying genes was used to identify bacterial species and their denitrifying capability in the sediment. The ability to sequence denitrification genes in established oyster beds over a period of years was also unique to this study. Significant differences were found in soil properties, denitrification rates, and phosphorus sequestration between control sites and restored oyster beds. Gene sequencing also found differences in bacterial populations between the sites. Oyster bed restoration resulted in a rapid increase in nutrient removal as beds developed over three years, but additional benefits were limited as restoration progressed further. This study adds an investigation of IRL oysters to existing knowledge of nutrient removal by oysters in other estuaries. These results help clarify single year studies focused on seasonal changes by showing a rapid increase in oyster bed nutrient removal over a period of three years.

Subsoil denitrification experiments at KBS MSU

NASA Astrophysics Data System (ADS)

Shcherbak, I.; Robertson, G. P.

2011-12-01

Denitrification is a major soil process that produces nitrous oxide (N2O), a potent greenhouse gas. Most research on denitrification has, for various reasons, concentrated on the top soil layer, ignoring depths below 10-20 cm. Although denitrification is considered to be the most active in top soil, this layer usually accounts for only 10% of the total volume of the soil profile. Our research addresses the questions: How significant is denitrification at depth in the soil profile and how does it vary with land-use? We have two field experiments at the W. K. Kellogg Biological Station (KBS) in southwest Michigan: 1) tilled versus no-tillage rainfed fertilized corn and 2) rainfed versus irrigated corn at six fertilizer levels, with N2O concentrations measured at 10 depths (3, 7, 15, 20, 25, 50, 55, 70, 75, 125 cm) and 5 depths (10, 20, 30, 50, 75 cm), respectively , along with N2O fluxes to the atmosphere in both. Soil environment data (texture, water content, temperature and nitrate content) represent a combination of measured values and simulated values using the SALUS (System Approach to Land Use Sustainability) model. We used diffusion and water balance equations that incorporated carbon dioxide concentrations and flux data collected simultaneously with N2O to determine diffusivity as a function of water content and soil temperature. We used the same diffusivity to obtain N2O production as function of moisture, temperature, and nitrate availability. Further validation of the production function was performed with data collected from the KBS Long-Term Ecological Research (LTER) site , where we also measured belowground concentrations during the 2011 growing season.

Stimulation of soil nitrification and denitrification by grazing in grasslands: do changes in plant species composition matter?

PubMed

Le Roux, X; Bardy, M; Loiseau, P; Louault, F

2003-11-01

Stimulation of nitrification and denitrification by long term (from years to decades) grazing has commonly been reported in different grassland ecosystems. However, grazing generally induces important changes in plant species composition, and whether changes in nitrification and denitrification are primarily due to changes in vegetation composition has never been tested. We compared soil nitrification- and denitrification-enzyme activities (NEA and DEA, respectively) between semi-natural grassland sites experiencing intensive (IG) and light (LG) grazing/mowing regimes for 13 years. Mean NEA and DEA (i.e. observed from random soil sampling) were higher in IG than LG sites. The NEA/DEA ratio was higher in IG than LG sites, indicating a higher stimulation of nitrification. Marked changes in plant species composition were observed in response to the grazing/mowing regime. In particular, the specific phytomass volume of Elymus repens was lower in IG than LG sites, whereas the specific volume of Lolium perenne was higher in IG than LG sites. In contrast, the specific volume of Holcus lanatus, Poa trivialis and Arrhenatherum elatius were not significantly different between treatments. Soils sampled beneath grass tussocks of the last three species exhibited higher DEA, NEA and NEA/DEA ratio in IG than LG sites. For a given grazing regime, plant species did not affect significantly soil DEA, NEA and NEA/DEA ratio. The modification of plant species composition is thus not the primary factor driving changes in nitrification and denitrification in semi-natural grassland ecosystems experiencing long term intensive grazing. Factors such as trampling, N returned in animal excreta, and/or modification of N uptake and C exudation by frequently defoliated plants could be responsible for the enhanced microbial activities.

Nitrous oxide emission from denitrification in stream and river networks

USGS Publications Warehouse

Beaulieu, J.J.; Tank, J.L.; Hamilton, S.K.; Wollheim, W.M.; Hall, R.O.; Mulholland, P.J.; Peterson, B.J.; Ashkenas, L.R.; Cooper, L.W.; Dahm, Clifford N.; Dodds, W.K.; Grimm, N. B.; Johnson, S.L.; McDowell, W.H.; Poole, G.C.; Maurice, Valett H.; Arango, C.P.; Bernot, M.J.; Burgin, A.J.; Crenshaw, C.L.; Helton, A.M.; Johnson, L.T.; O'Brien, J. M.; Potter, J.D.; Sheibley, R.W.; Sobota, D.J.; Thomas, S.M.

2011-01-01

Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N 2O via microbial denitrification that converts N to N2O and dinitrogen (N2). The fraction of denitrified N that escapes as N2O rather than N2 (i.e., the N2O yield) is an important determinant of how much N2O is produced by river networks, but little is known about the N2O yield in flowing waters. Here, we present the results of whole-stream 15N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N2O at rates that increase with stream water nitrate (NO3-) concentrations, but that <1% of denitrified N is converted to N2O. Unlike some previous studies, we found no relationship between the N2O yield and stream water NO3-. We suggest that increased stream NO3- loading stimulates denitrification and concomitant N2O production, but does not increase the N2O yield. In our study, most streams were sources of N2O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg??y -1 of anthropogenic N inputs to N2O in river networks, equivalent to 10% of the global anthropogenic N2O emission rate. This estimate of stream and river N2O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change.

Variability and regulation of denitrification in an Upper Mississippi River backwater

USGS Publications Warehouse

Strauss, E.A.; Richardson, W.B.; Cavanaugh, J.C.; Bartsch, L.A.; Kreiling, Rebecca M.; Standorf, A.J.

2006-01-01

Sediments in the backwaters of the Upper Mississippi River (UMR) are highly organic and provide an optimal environment for N removal. We monitored an 8.6-ha UMR backwater site near La Crosse, Wisconsin, for nearly 3 y to assess temporal variability, seasonal trends, and the factors regulating denitrification. We measured rates of unamended denitrification (DEN) and denitrification enzyme activity (DEA) rates at ambient temperature and DEA at 30 degrees C (DEA30). Seasonal mean (+/- 1 SE) DEN rates ranged from 0.041 +/- 0.015 to 0.47 +/- 0.23 mu g N cm(-2) h(-1)and were highest in winter and lowest in autumn. Seasonal rates of DEA exhibited a different pattern with the highest rates in summer (25.6 +/- 3.4 mu g N cm(-2) h(-1)) and the lowest rates in winter (10.6 +/- 2.1 mu g N cm(-2) h(-1)). The overall mean DEA30 rate was 31.0 +/- 1.9 mu g N cm(-2) h(-1) but showed no significant seasonal pattern. Short-term (weekly) and seasonal variability exhibited by rates of DEN and DEA were best explained by water-column NO3- concentration and temperature, respectively. No environmental variables explained a significant amount of variability in DEA30. Our results suggest that nutrient (i.e., NO3-) availability and temperature are both regulators of denitrification, with NO3- concentration being the most important limiting factor in this system. The high DEN rates during winter were in response to elevated NO3- concentrations resulting from a chain reaction beginning with algal blooms creating oxic conditions that stimulated nitrification. Increasing hydrological connectivity in large rivers as a river management tool to reduce N flux to downstream areas may be beneficial.

Effect of nitrate, organic carbon, and temperature on potential denitrification rates in nitrate-rich riverbed sediments

USGS Publications Warehouse

Pfenning, K.S.; McMahon, P.B.

1997-01-01

A study conducted in 1994 as part of the US Geological Survey's National Water-Quality Assessment Program, South Platte River Basin investigation, examined the effect of certain environmental factors on potential denitrification rates in nitrate-rich riverbed sediments. The acetylene block technique was used to measure nitrous oxide (N2O) production rates in laboratory incubations of riverbed sediments to evaluate the effect of varying nitrate concentrations, organic carbon concentrations and type, and water temperature on potential denitrification rates. Sediment incubations amended with nitrate, at concentrations ranging from 357 to 2142 ??mol l-1 (as measured in the field), produced no significant increase (P > 0.05) in N2O production rates, indicating that the denitrification potential in these sediments was not nitrate limited. In contrast, incubations amended with acetate as a source of organic carbon, at concentrations ranging from 0 to 624 ??mol l-1, produced significant increases (P < 0.05) in N2O production rates with increased organic carbon concentration, indicating that the denitrification potential in these sediments was organic carbon limited. Furthermore, N2O production rates also were affected by the type of organic carbon available as an electron donor. Acetate and surface-water-derived fulvic acid supported higher N2O production rates than groundwater-derived fulvic acid or sedimentary organic carbon. Lowering incubation temperatures from 22 to 4??C resulted in about a 77% decrease in the N2O production rates. These results help to explain findings from previous studies indicating that only 15-30% of nitrate in groundwater was denitrified before discharging to the South Platte River and that nitrate concentrations in the river generally were higher in winter than in summer.

Chemical, isotopic, and microbiological evidence for denitrification during transport of domestic wastewater through a thick unsaturated zone in the Mojave Desert, San Bernardino County, California

USGS Publications Warehouse

Schroeder, R.A.; Martin, P.M.; Böhlke, J.K.

1993-01-01

Nitrogen in downward-infiltrating wastewater discharged from seepage pits (dry wells) at residences in the upper Mojave River Basin, California represents a significant potential source of nitrate contamination to the underlying ground water. However, increases in nitrate concentration in the ground water have not yet been observed. The low nitrate concentration in the ground water may be the result of lateral dispersion in the unsaturated zone, dilution below the water table, or denitrification of wastewater nitrate in the unsaturated zone. Measured vertical rates indicate that some wastewater has reached the water table beneath communities that are older than 5 to 10 years. As wastewater percolates from seepage pits into the unsaturated zone, reduced nitrogen is converted rapidly to nitrate at shallow depths and the nitrate concentrations commonly decrease with depth. The largest nitrate decreases seem to coincide with increased content of fine-grained sediments or with proximity to the water table. Between lysimeters at 160 and 199 feet at one residence, the decrease in nitrate concentration coincided with a large increase in sulfate, decrease in alkalinity, and increase in 815N in nitrate. Those data are consistent with denitrification by oxidation of iron sulfide to produce ferric oxides; but if such a reaction occurs, it must be in domains that are small in comparison with the sampled volumes because the waters also contain substantial quantities of dissolved oxygen. The predominantly low nitrate concentrations in the area's ground water are consistent with the operation of a nitrogen-removal mechanism, possibly denitrification; however, the reducing capacity of the sediments to maintain denitrification is not known.

Stimulating in situ denitrification in an aerobic, highly permeable municipal drinking water aquifer

NASA Astrophysics Data System (ADS)

Critchley, K.; Rudolph, D. L.; Devlin, J. F.; Schillig, P. C.

2014-12-01

A preliminary trial of a cross-injection system (CIS) was designed to stimulate in situ denitrification in an aquifer servicing an urban community in southern Ontario. It was hypothesized that this remedial strategy could be used to reduce groundwater nitrate in the aquifer such that it could remain in use as a municipal supply until the beneficial effects of local reduced nutrient loadings lead to long-term water quality improvement at the wellfield. The CIS application involved injecting a carbon source (acetate) into the subsurface using an injection-extraction well pair positioned perpendicular to the regional flow direction, up-gradient of the water supply wells, with the objective of stimulating native denitrifying bacteria. The pilot remedial strategy was targeted in a high nitrate flux zone within an aerobic and heterogeneous section of the glacial sand and gravel aquifer. Acetate injections were performed at intervals ranging from daily to bi-daily. The carbon additions led to general declines in dissolved oxygen concentrations; decreases in nitrate concentration were localized in aquifer layers where velocities were estimated to be less than 0.5 m/day. NO3-15N and NO3-18O isotope data indicated the nitrate losses were due to denitrification. Relatively little nitrate was removed from groundwater in the more permeable strata, where velocities were estimated to be on the order of 18 m/day or greater. Overall, about 11 percent of the nitrate mass passing through the treatment zone was removed. This work demonstrates that stimulating in situ denitrification in an aerobic, highly conductive aquifer is challenging but achievable. Further work is needed to increase rates of denitrification in the most permeable units of the aquifer.

Microbiology and potential applications of aerobic methane oxidation coupled to denitrification (AME-D) process: A review.

PubMed

Zhu, Jing; Wang, Qian; Yuan, Mengdong; Tan, Giin-Yu Amy; Sun, Faqian; Wang, Cheng; Wu, Weixiang; Lee, Po-Heng

2016-03-01

Aerobic methane oxidation coupled to denitrification (AME-D) is an important link between the global methane and nitrogen cycles. This mini-review updates discoveries regarding aerobic methanotrophs and denitrifiers, as a prelude to spotlight the microbial mechanism and the potential applications of AME-D. Until recently, AME-D was thought to be accomplished by a microbial consortium where denitrifying bacteria utilize carbon intermediates, which are excreted by aerobic methanotrophs, as energy and carbon sources. Potential carbon intermediates include methanol, citrate and acetate. This mini-review presents microbial thermodynamic estimations and postulates that methanol is the ideal electron donor for denitrification, and may serve as a trophic link between methanotrophic bacteria and denitrifiers. More excitingly, new discoveries have revealed that AME-D is not only confined to the conventional synergism between methanotrophic bacteria and denitrifiers. Specifically, an obligate aerobic methanotrophic bacterium, Methylomonas denitrificans FJG1, has been demonstrated to couple partial denitrification with methane oxidation, under hypoxia conditions, releasing nitrous oxide as a terminal product. This finding not only substantially advances the understanding of AME-D mechanism, but also implies an important but unknown role of aerobic methanotrophs in global climate change through their influence on both the methane and nitrogen cycles in ecosystems. Hence, further investigation on AME-D microbiology and mechanism is essential to better understand global climate issues and to develop niche biotechnological solutions. This mini-review also presents traditional microbial techniques, such as pure cultivation and stable isotope probing, and powerful microbial techniques, such as (meta-) genomics and (meta-) transcriptomics, for deciphering linked methane oxidation and denitrification. Although AME-D has immense potential for nitrogen removal from wastewater, drinking water and groundwater, bottlenecks and potential issues are also discussed. Copyright © 2015 Elsevier Ltd. All rights reserved.

Fungi regulate response of N2O production to warming and grazing in a Tibetan grassland

NASA Astrophysics Data System (ADS)

Zhong, Lei; Wang, Shiping; Xu, Xingliang; Wang, Yanfen; Rui, Yichao; Zhou, Xiaoqi; Shen, Qinhua; Wang, Jinzhi; Jiang, Lili; Luo, Caiyun; Gu, Tianbao; Ma, Wenchao; Chen, Guanyi

2018-03-01

Lack of understanding of the effects of warming and winter grazing on soil fungal contribution to nitrous oxide (N2O) production has limited our ability to predict N2O fluxes under changes in climate and land use management, because soil fungi play an important role in driving terrestrial N cycling. Here, we examined the effects of 10 years' warming and winter grazing on soil N2O emissions potential in an alpine meadow. Our results showed that soil bacteria and fungi contributed 46 % and 54 % to nitrification, and 37 % and 63 % to denitrification, respectively. Neither warming nor winter grazing affected the activity of enzymes responsible for overall nitrification and denitrification. However, warming significantly increased the enzyme activity of bacterial nitrification and denitrification to 53 % and 55 %, respectively. Warming significantly decreased enzyme activity of fungal nitrification and denitrification to 47 % and 45 %, respectively, while winter grazing had no such effect. We conclude that soil fungi could be the main source for N2O production potential in the Tibetan alpine grasslands. Warming and winter grazing may not affect the potential for soil N2O production potential, but climate warming can alter biotic pathways responsible for N2O production. These findings indicate that characterizing how fungal nitrification/denitrification contributes to N2O production, as well as how it responds to environmental and land use changes, can advance our understanding of N cycling. Therefore, our results provide some new insights about ecological controls on N2O production and lead to refine greenhouse gas flux models.

An additional simple denitrification bioreactor using packed gel envelopes applicable to industrial wastewater treatment.

PubMed

Morita, Masahiko; Uemoto, Hiroaki; Watanabe, Atsushi

2007-08-15

A simple denitrification bioreactor for nitrate-containing wastewater without organic compounds was developed. This bioreactor consisted of packed gel envelopes in a single tank. Each envelope comprised two plates of gels containing Paracoccus denitrificans cells with an internal space between the plates. As an electron donor for denitrification, ethanol was injected into the internal space and not directly into the wastewater. P. denitrificans cells in the gel reduced nitrate to nitrogen gas by using the injected ethanol. Nitrate-containing desulfurization wastewater derived from a coal-fired thermal power plant was continuously treated with 20 packed gel envelopes (size, 1,000 x 900 x 12 mm; surface area, 1.44 m(2)) in a reactor tank (volume 1.5 m(3)). When the total nitrogen concentration in the inflow was around 150 mg-N x L(-1), the envelopes removed approximately 60-80% of the total nitrogen, and the maximum nitrogen removal rate was 5.0 g-N x day(-1) per square meter of the gel surface. This value corresponded to the volumetric nitrogen removal performance of 0.109 kg-N x m(-3) x day(-1). In each envelope, a high utilization efficiency of the electron donor was attained, although more than the double amount of the electron donor was empirically injected in the present activated sludge system to achieve denitrification when compared with the theoretical value. The bioreactor using the envelopes would be extremely effective as an additional denitrification system because these envelopes can be easily installed in the vacant spaces of preinstalled water treatment systems, without requiring additional facilities for removing surplus ethanol and sludge. (c) 2007 Wiley Periodicals, Inc.

Simultaneous nitrification and denitrification with different mixed nitrogen loads by a hypothermia aerobic bacterium.

PubMed

He, Tengxia; Li, Zhenlun; Xie, Deti; Sun, Quan; Xu, Yi; Ye, Qing; Ni, Jiupai

2018-04-01

Microorganism with simultaneous nitrification and denitrification ability plays a significant role in nitrogen removal process, especially in the eutrophic waters with excessive nitrogen loads. The nitrogen removal capacity of microorganism may suffer from low temperature or nitrite nitrogen source. In this study, a hypothermia aerobic nitrite-denitrifying bacterium, Pseudomonas tolaasii strain Y-11, was selected to determine the simultaneous nitrification and denitrification ability with mixed nitrogen source at 15 °C. The sole nitrogen removal efficiencies of strain Y-11 in simulated wastewater were obtained. After 24 h of incubation at 15 °C, the ammonium nitrogen fell below the detection limit from an initial value of 10.99 mg/L. Approximately 88.0 ± 0.33% of nitrate nitrogen was removed with the initial concentration of 11.78 mg/L and the nitrite nitrogen was not detected with the initial concentration of 10.75 mg/L after 48 h of incubation at 15 °C. Additionally, the simultaneous nitrification and denitrification nitrogen removal ability of P. tolaasii strain Y-11 was evaluated using low concentration of mixed NH 4 + -N and NO 3 - -N/NO 2 - -N (about 5 mg/L-N each) and high concentration of mixed NH 4 + -N and NO 3 - -N/NO 2 - -N (about 100 mg/L-N each). There was no nitrite nitrogen accumulation at the time of evaluation. The results demonstrated that P. tolaasii strain Y-11 had higher simultaneous nitrification and denitrification capacity with low concentration of mixed inorganic nitrogen sources and may be applied in low temperature wastewater treatment.

Use of a dynamic simulation model to understand nitrogen cycling in the middle Rio Grande, NM.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meixner, Tom; Tidwell, Vincent Carroll; Oelsner, Gretchen

2008-08-01

Water quality often limits the potential uses of scarce water resources in semiarid and arid regions. To best manage water quality one must understand the sources and sinks of both solutes and water to the river system. Nutrient concentration patterns can identify source and sink locations, but cannot always determine biotic processes that affect nutrient concentrations. Modeling tools can provide insight into these large-scale processes. To address questions about large-scale nitrogen removal in the Middle Rio Grande, NM, we created a system dynamics nitrate model using an existing integrated surface water--groundwater model of the region to evaluate our conceptual modelsmore » of uptake and denitrification as potential nitrate removal mechanisms. We modeled denitrification in groundwater as a first-order process dependent only on concentration and used a 5% denitrification rate. Uptake was assumed to be proportional to transpiration and was modeled as a percentage of the evapotranspiration calculated within the model multiplied by the nitrate concentration in the water being transpired. We modeled riparian uptake as 90% and agricultural uptake as 50% of the respective evapotranspiration rates. Using these removal rates, our model results suggest that riparian uptake, agricultural uptake and denitrification in groundwater are all needed to produce the observed nitrate concentrations in the groundwater, conveyance channels, and river as well as the seasonal concentration patterns. The model results indicate that a total of 497 metric tons of nitrate-N are removed from the Middle Rio Grande annually. Where river nitrate concentrations are low and there are no large nitrate sources, nitrate behaves nearly conservatively and riparian and agricultural uptake are the most important removal mechanisms. Downstream of a large wastewater nitrate source, denitrification and agricultural uptake were responsible for approximately 90% of the nitrogen removal.« less

Role of anaerobic ammonium oxidation (anammox) in nitrogen removal from a freshwater aquifer

USGS Publications Warehouse

Smith, Richard L.; Böhlke, John Karl; B. Song,; C. Tobias,

2015-01-01

Anaerobic ammonium oxidation (anammox) couples the oxidation of ammonium with the reduction of nitrite, producing N2. The presence and activity of anammox bacteria in groundwater were investigated at multiple locations in an aquifer variably affected by a large, wastewater-derived contaminant plume. Anammox bacteria were detected at all locations tested using 16S rRNA gene sequencing and quantification of hydrazine oxidoreductase (hzo) gene transcripts. Anammox and denitrification activities were quantified by in situ 15NO2–tracer tests along anoxic flow paths in areas of varying ammonium, nitrate, and organic carbon abundances. Rates of denitrification and anammox were determined by quantifying changes in 28N2, 29N2, 30N2, 15NO3–, 15NO2–, and 15NH4+ with groundwater travel time. Anammox was present and active in all areas tested, including where ammonium and dissolved organic carbon concentrations were low, but decreased in proportion to denitrification when acetate was added to increase available electron supply. Anammox contributed 39–90% of potential N2 production in this aquifer, with rates on the order of 10 nmol N2–N L–1 day–1. Although rates of both anammox and denitrification during the tracer tests were low, they were sufficient to reduce inorganic nitrogen concentrations substantially during the overall groundwater residence times in the aquifer. These results demonstrate that anammox activity in groundwater can rival that of denitrification and may need to be considered when assessing nitrogen mass transport and permanent loss of fixed nitrogen in aquifers.

Who contributes more to N2O emission during sludge bio-drying with two different aeration strategies, nitrifiers or denitrifiers?

PubMed

Zhang, Junya; Wang, Yuanyue; Yu, Dawei; Tong, Juan; Chen, Meixue; Sui, Qianwen; ChuLu, BuHe; Wei, Yuansong

2017-04-01

Global warming effects have drawn more and more attention to studying all sources and sinks of nitrous oxide (N 2 O). Sludge bio-drying, as an effective sludge treatment technology, is being adopted worldwide. In this study, two aeration strategies (piles I and II) were compared to investigate the primary contributors to N 2 O emission during sludge bio-drying through studying the evolution of functional genes involved in nitrification (amoA, hao, and nxrA) and denitrification (narG, nirS, nirK, norB, and nosZ) by quantitative PCR (qPCR). Results showed that the profile of N 2 O emission can be divided into three stages, traditional denitrification contributed largely to N 2 O emission at stage I (days 1-5), but N 2 O emission mainly happened at stage II (days 5-14) due to nitrifier denitrification and NH 2 OH accumulation by ammonia-oxidizing bacteria (AOB), accounting for 51.4% and 58.2% of total N 2 O emission for piles I and II, respectively. At stage III (days 14-21), nitrifier denitrification was inhibited because sludge bio-drying proceeded mainly by the physical aeration, thus N 2 O emission decreased and changed little. The improved aeration strategy availed pile I to reduce N 2 O emission much especially at stages II and III, respectively. These results indicated that nitrifier denitrification by AOB and biological NH 2 OH oxidation due to AOB made more contribution to N 2 O emission, and aeration strategy was crucial to mitigate N 2 O emission during sludge bio-drying.

Effects of hydraulic retention time and [Formula: see text] ratio on thiosulfate-driven autotrophic denitrification for nitrate removal from micro-polluted surface water.

PubMed

Wang, Zheng; Fei, Xiang; He, Sheng-Bing; Huang, Jung-Chen; Zhou, Wei-Li

2017-11-01

This study was carried out to investigate the possibility of a thiosulfate-driven autotrophic denitrification for nitrate-N removal from micro-polluted surface water. The aim was to study the effects of [Formula: see text] ratio (S/N molar ratio) and hydraulic retention time (HRT) on the autotrophic denitrification performance. Besides, utilization efficiencies of [Formula: see text] along the biofilter and the restart-up of the bioreactor were also investigated. Autotrophic denitrification using thiosulfate as an electron donor for treating micro-polluted surface water without the addition of external alkalinity proved to be feasible and the biofilter could be readied in two weeks. Average nitrate-N removal efficiencies at HRTs of 0.5, 1 and 2 h were 78.7%, 87.8% and 97.4%, respectively, and corresponding removal rates were 186.24, 103.92 and 58.56 g [Formula: see text], respectively. When water temperature was in the range of 8-12°C and HRT was 1 h, average nitrate-N removal efficiencies of 41.9%, 97.1% and 97.0%, nitrite accumulation concentrations of 1.45, 0.46 and 0.22 mg/L and thiosulfate utilization efficiencies of 100%, 98.8% and 92.1% were obtained at S/N ratios of 1.0, 1.2 and 1.5, respectively. Besides, the autotrophic denitrification rate in the filtration media layer was the highest along the biofilter at an S/N ratio of 1.5. Finally, after a one-month period of starvation, the biofilter could be restarted successfully in three weeks without inoculation of seed sludge.

Effect of settled diatom‐aggregates on benthic nitrogen cycling

PubMed Central

Thamdrup, Bo; Stief, Peter; Glud, Ronnie N.

2017-01-01

Abstract The marine sediment hosts a mosaic of microhabitats. Recently it has been demonstrated that the settlement of phycodetrital aggregates can induce local changes in the benthic O2 distribution due to confined enrichment of organic material and alteration of the diffusional transport. Here, we show how this microscale O2 shift substantially affects benthic nitrogen cycling. In sediment incubations, the settlement of diatom‐aggregates markedly enhanced benthic O2 and NO3− consumption and stimulated NO2− and NH4+ production. Oxygen microprofiles revealed the rapid development of anoxic niches within and underneath the aggregates. During 120 h following the settling of the aggregates, denitrification of NO3− from the overlying water increased from 13.5 μmol m−2 h−1 to 24.3 μmol m−2 h−1, as quantified by 15N enrichment experiment. Simultaneously, N2 production from coupled nitrification‐denitrification decreased from 33.4 μmol m−2 h−1 to 25.9 μmol m−2 h−1, probably due to temporary inhibition of the benthic nitrifying community. The two effects were of similar magnitude and left the total N2 production almost unaltered. At the aggregate surface, nitrification was, conversely, very efficient in oxidizing NH4+ liberated by mineralization of the aggregates. The produced NO3− was preferentially released into the overlying water and only a minor fraction contributed to denitrification activity. Overall, our data indicate that the abrupt change in O2 microdistribution caused by aggregates stimulates denitrification of NO3− from the overlying water, and loosens the coupling between benthic nitrification and denitrification both in time and space. The study contributes to expanding the conceptual and quantitative understanding of how nitrogen cycling is regulated in dynamic benthic environments. PMID:29456269

Stimulating in situ denitrification in an aerobic, highly permeable municipal drinking water aquifer.

PubMed

Critchley, K; Rudolph, D L; Devlin, J F; Schillig, P C

2014-12-15

A preliminary trial of a cross-injection system (CIS) was designed to stimulate in situ denitrification in an aquifer servicing an urban community in southern Ontario. It was hypothesized that this remedial strategy could be used to reduce groundwater nitrate in the aquifer such that it could remain in use as a municipal supply until the beneficial effects of local reduced nutrient loadings lead to long-term water quality improvement at the wellfield. The CIS application involved injecting a carbon source (acetate) into the subsurface using an injection-extraction well pair positioned perpendicular to the regional flow direction, up-gradient of the water supply wells, with the objective of stimulating native denitrifying bacteria. The pilot remedial strategy was targeted in a high nitrate flux zone within an aerobic and heterogeneous section of the glacial sand and gravel aquifer. Acetate injections were performed at intervals ranging from daily to bi-daily. The carbon additions led to general declines in dissolved oxygen concentrations; decreases in nitrate concentration were localized in aquifer layers where velocities were estimated to be less than 0.5m/day. NO3-(15)N and NO3-(18)O isotope data indicated the nitrate losses were due to denitrification. Relatively little nitrate was removed from groundwater in the more permeable strata, where velocities were estimated to be on the order of 18 m/day or greater. Overall, about 11 percent of the nitrate mass passing through the treatment zone was removed. This work demonstrates that stimulating in situ denitrification in an aerobic, highly conductive aquifer is challenging but achievable. Further work is needed to increase rates of denitrification in the most permeable units of the aquifer. Copyright © 2014 Elsevier B.V. All rights reserved.

Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances.

PubMed

Sutka, R L; Ostrom, N E; Ostrom, P H; Breznak, J A; Gandhi, H; Pitt, A J; Li, F

2006-01-01

The intramolecular distribution of nitrogen isotopes in N2O is an emerging tool for defining the relative importance of microbial sources of this greenhouse gas. The application of intramolecular isotopic distributions to evaluate the origins of N2O, however, requires a foundation in laboratory experiments in which individual production pathways can be isolated. Here we evaluate the site preferences of N2O produced during hydroxylamine oxidation by ammonia oxidizers and by a methanotroph, ammonia oxidation by a nitrifier, nitrite reduction during nitrifier denitrification, and nitrate and nitrite reduction by denitrifiers. The site preferences produced during hydroxylamine oxidation were 33.5 +/- 1.2 per thousand, 32.5 +/- 0.6 per thousand, and 35.6 +/- 1.4 per thousand for Nitrosomonas europaea, Nitrosospira multiformis, and Methylosinus trichosporium, respectively, indicating similar site preferences for methane and ammonia oxidizers. The site preference of N2O from ammonia oxidation by N. europaea (31.4 +/- 4.2 per thousand) was similar to that produced during hydroxylamine oxidation (33.5 +/- 1.2 per thousand) and distinct from that produced during nitrifier denitrification by N. multiformis (0.1 +/- 1.7 per thousand), indicating that isotopomers differentiate between nitrification and nitrifier denitrification. The site preferences of N2O produced during nitrite reduction by the denitrifiers Pseudomonas chlororaphis and Pseudomonas aureofaciens (-0.6 +/- 1.9 per thousand and -0.5 +/- 1.9 per thousand, respectively) were similar to those during nitrate reduction (-0.5 +/- 1.9 per thousand and -0.5 +/- 0.6 per thousand, respectively), indicating no influence of either substrate on site preference. Site preferences of approximately 33 per thousand and approximately 0 per thousand are characteristic of nitrification and denitrification, respectively, and provide a basis to quantitatively apportion N2O.

[Temporal-spatial distribution of agricultural diffuse nitrogen pollution and relationship with soil respiration and nitrification].

PubMed

Wei, Ouyang; Cai, Guan-Qing; Huang, Hao-Bo; Geng, Xiao-Jun

2014-06-01

The soil respiration, nitrification and denitrification processes play an important role on soil nitrogen transformation and diffuse nitrogen loading. These processes are also the chains for soil circle. In this study, the Zhegao watershed located north of Chaohu Lake was selected to explore the interactions of these processes with diffuse nitrogen pollution. The BaPS (Barometric Process Separation) was applied to analyze the soil respiration, nitrification and denitrification processes in farmland and forest. The SWAT (Soil and Water Assessment Tool) simulated the temporal and spatial pattern of diffuse nitrogen loading. As the expanding of farmland and higher level of fertilization, the yearly mean loading of diffuse nitrogen increased sustainably from 1980-1995 to 1996-2012. The monthly loading in 1996-2012 was also higher than that in the period of 1980-1995, which closely related to the precipitation. The statistical analysis indicated that there was a significant difference between two periods. The yearly averaged loading of the whole watershed in 1996-2012 was 10.40 kg x hm(-2), which was 8.10 kg x hm(-2) in 1980-1995. The variance analysis demonstrated that there was also a big difference between the spatial distributions of two periods. The forest soil had much higher soil respiration than the farmland soil. But the farmland had higher nitrification and denitrification rates. The more intensive nitrogen transformation in the farmland contributed to the less diffuse nitrogen loading. As the nitrification rate of farmland was higher than denitrification rate, agricultural diffuse nitrate nitrogen loading would increase and organic nitrogen loading would reduce. The analysis of soil respiration, nitrification and denitrification is helpful for the study of soil nitrogen circle form the aspect of soil biology, which also benefits the control of agricultural diffuse nitrogen pollution.

The link between the microbial ecology, gene expression, and biokinetics of denitrifying polyphosphate-accumulating systems under different electron acceptor combinations.

PubMed

Vieira, A; Ribera-Guardia, A; Marques, R; Barreto Crespo, M T; Oehmen, A; Carvalho, G

2018-06-02

The emission of the greenhouse gas nitrous oxide (N 2 O) can occur during biological nutrient removal. Denitrifying enhanced biological phosphorus removal (d-EBPR) systems are an efficient means of removing phosphate and nitrogen, performed by denitrifying polyphosphate-accumulating organisms (d-PAOs). The aim of this work was to study the effect of various combinations of electron acceptors, nitrate (NO 3 - ), nitrite (NO 2 - ), and N 2 O, on the denitrification pathway of a d-EBPR system. Batch tests were performed with different electron acceptor combinations, to explore the denitrification pathway. Reverse transcriptase-qPCR (RT-qPCR) and high-throughput sequencing, combined with chemical analysis, were used to study gene expression, microbial diversity, and denitrification kinetics. The potential for N 2 O production was greater than the potential for its reduction in most tests. A strong correlation was observed between the N 2 O reduction rate and the relative gene expression of nitrous oxide reductase per nitrite reductase (nosZ/(nirS + nirK)), suggesting that the expression of denitrifying marker genes is a strong predictor of the N 2 O reduction rate. The d-EBPR community maintained a core population with low variations throughout the study. Furthermore, phylogenetic analyses of the studied marker genes revealed that the organisms actively involved in denitrification were closely related to Thauera sp., Candidatus Accumulibacter phosphatis, and Candidatus Competibacter denitrificans. Moreover, Competibacter-related OTUs seem to be important contributors to the N 2 O reduction capacity of the system, likely scavenging the N 2 O produced by other organisms. Overall, this study contributes to a better understanding of the microbial biochemistry and the genetics involving biological denitrification removal, important to minimize N 2 O emissions in wastewater treatment plants.

A comparative study of methanol as a supplementary carbon source for enhancing denitrification in primary and secondary anoxic zones.

PubMed

Ginige, Maneesha P; Bowyer, Jocelyn C; Foley, Leah; Keller, Jürg; Yuan, Zhiguo

2009-04-01

A comparative study on the use of methanol as a supplementary carbon source to enhance denitrification in primary and secondary anoxic zones is reported. Three lab-scale sequencing batch reactors (SBR) were operated to achieve nitrogen and carbon removal from domestic wastewater. Methanol was added to the primary anoxic period of the first SBR, and to the secondary anoxic period of the second SBR. No methanol was added to the third SBR, which served as a control. The extent of improvement on the denitrification performance was found to be dependent on the reactor configuration. Addition to the secondary anoxic period is more effective when very low effluent nitrate levels are to be achieved and hence requires a relatively large amount of methanol. Adding a small amount of methanol to the secondary anoxic period may cause nitrite accumulation, which does not improve overall nitrogen removal. In the latter case, methanol should be added to the primary anoxic period. The addition of methanol can also improve biological phosphorus removal by creating anaerobic conditions and increasing the availability of organic carbon in wastewater for polyphosphate accumulating organisms. This potentially provides a cost-effective approach to phosphorus removal from wastewater with a low carbon content. New fluorescence in situ hybridisation (FISH) probes targeting methanol-utilising denitrifiers were designed using stable isotope probing. Microbial structure analysis of the sludges using the new and existing FISH probes clearly showed that the addition of methanol stimulated the growth of specific methanol-utilizing denitrifiers, which improved the capability of sludge to use methanol and ethanol for denitrification, but reduced its capability to use wastewater COD for denitrification. Unlike acetate, long-term application of methanol has no negative impact on the settling properties of the sludge.

Research on denitrification efficiency of three types of solid carbon source

NASA Astrophysics Data System (ADS)

Cai, Y.; Zhang, J. D.; Li, F.; Cao, Y. X.; Zhu, L. Y.; Xiao, M. S.

2018-01-01

C/N rates can greatly influence efficiency of denitrification. It is difficult for current treated effluent to reach GB18918-2002 primary effluent standard because of its low C/N rate. To improve the efficiency of denitrification, the quality of effluent, and realize the waste recycling, this article selected magnolia leaves, loofah and degradable meal box as the solid carbon source and set different solid-liquid ratio of magnolia leaves for periodic denitrification stage to study the change of NO3 --N, TN, COD, NO2 --N, NH4 +, PO4 3- and color. The results showed that in the condition of influent nitrate concentration of 40 mg/L, carbon dosage of 10 g, the reaction temperature of 25°C, the nitrate removal rates of magnolia leaves and loofah reached 89.0% and 96.8% respectively, rather higher than degradable meal box (56.3%). The TN removal rates of magnolia leaves (91.7%) and loofah (77.7%) were both higher than degradable meal box (53.9%), and the effluent TN concentration of loofah and degradable meal box reached 25.4 mg/L and 21.1 mg/L respectively, which couldn’t be discharged according to the primary effluent concentration standard of GB18918-2002. The released concentration of ammonia nitrogen and phosphate: loofah> magnolia> degradable meal box. The high solid-liquid ratio of magnolia leaves helped to improve the TN removal rate, which reached 75.0% (1:200) and 91.7% (1:100), but it caused higher released concentration of carbon, ammonia nitrogen and phosphate to effect system heavily. Under the integrated analysis, the low solid-liquid ratio (1:200) of magnolia leaves was more suitable to be the denitrification external carbon source.

Denitrification of aging biogas slurry from livestock farm by photosynthetic bacteria.

PubMed

Yang, Anqi; Zhang, Guangming; Yang, Guang; Wang, Hangyao; Meng, Fan; Wang, Hongchen; Peng, Meng

2017-05-01

Huge amount of aging biogas slurry is in urgent need to be treated properly. However, due to high NH 3 -N concentration and low C/N ratio, this aging biogas slurry is refractory for traditional methods. Its denitrification has become a big challenge. In this paper, photosynthetic bacteria (PSB) were employed to handle this problem. The results showed denitrification of aging biogas slurry by PSB treatment was promising. The highest removal efficiency of NH 3 -N reached 99.75%, much higher than all other treatments. The removal of NH 3 -N followed pseudo zero order reaction under dark-aerobic condition. The better inoculation rate for NH 3 -N removal was 30%; and aerobic condition was more beneficial for NH 3 -N removal than anaerobic condition because of different metabolic pathways. Copyright © 2017 Elsevier Ltd. All rights reserved.

Optimization of VFAs and ethanol production with waste sludge used as the denitrification carbon source.

PubMed

Guo, Liang; Zhang, Jiawen; Yin, Li; Zhao, Yangguo; Gao, Mengchun; She, Zonglian

2015-01-01

An acidification metabolite such as volatile fatty acids (VFAs) and ethanol could be used as denitrification carbon sources for solving the difficult problem of carbon source shortages and low nitrogen removal efficiency. A proper control of environmental factors could be essential for obtaining the optimal contents of VFAs and ethanol. In this study, suspended solids (SS), oxidation reduction potential (ORP) and shaking rate were chosen to investigate the interactive effects on VFAs and ethanol production with waste sludge. It was indicated that T-VFA yield could be enhanced at lower ORP and shaking rate. Changing the SS, ORP and shaking rate could influence the distribution of acetic, propionic, butyric, valeric acids and ethanol. The optimal conditions for VFAs and ethanol production used as a denitrification carbon source were predicted by analyzing response surface methodology (RSM).

Denitrification associated with stream periphyton: Chamber estimates from undisrupted communities

USGS Publications Warehouse

Duff, J.H.; Triska, F.J.; Oremland, R.S.

1984-01-01

Undisrupted periphyton communities from a N-rich (NO3- = 63 ??mol L-1) and pristine (NO3- = 2.9 ??mol L-1) stream were assayed for denitrifying activity (acetylene-blockage technique) in 40-L chambers incubated at in situ temperature and nutrient concentrations. Nitrous oxide formation associated with periphyton from the N-rich stream was immediate and linear (52.1 ??mol N2O m-2 h-1) in the dark, anaerobic chamber (50 kPa C2H2). In the corresponding light, aerobic chamber (50 kPa C2H2), N2O production was inhibited by 82% (9.3 ??mol N2O m-2 h-1). Nitrous oxide formation was not associated with periphyton from the pristine stream incubated in situ, either with or without NO3- amendment. Denitrification estimates made with undisrupted periphyton communities at in situ temperature and nutrient concentrations (40-L chambers) were less variable than estimates made with periphyton 'scrapings' in small flasks (room temperature). The calculated diel periphyton-associated denitrification rate based on a 14-h light-10-h dark day was 651 ??mol N2O m-2 d-1. The data suggest denitrification within periphyton mats may contribute toward removal of NO3- from N-rich fluvial environments.

[Phylogenetic analysis and nitrogen removal characteristics of a heterotrophic nitrifying-aerobic denitrifying bacteria strain from marine environment].

PubMed

Sun, Xuemei; Li, Qiufen; Zhang, Yan; Liu, Huaide; Zhao, Jun; Qu, Keming

2012-06-04

We determined the phylogenetic position of a heterotrophic nitrifying-aerobic denitrifying bacterium X3, and detected its nitrogen removal characteristics for providing evidence to explain the principle of heterotrophic nitrification-aerobic denitrification and to improve the process in purification of marine-culture wastewater. The evolutionary position of the strain was determined based on its morphological, physiological, biochemical characteristics and 16SrRNA gene sequence. The nitrification-denitrification ability of this strain was detected by detecting its nitrogen removal efficiency and growth on different inorganic nitrogen source. Strain X3 was identified as Halomonas sp. It grew optimally at salinity 3%, pH 8.5, C:N 10:1 at 28 degrees C, and it could still survive at 15% salinity. The removal of NH4+ -N, NO2(-) -N and NO3(-) -N was 98.29%, 99.07%, 96.48% respectively within 24 h. When three inorganic nitrogen existed simultaneously, it always utilized ammonia firstly, and the total inorganic nitrogen removal was higher than with only one nitrogen, suggesting that strain X3 has the ability of simultaneous nitrification and denitrification and completing the whole nitrogen removing process. Strain X3 belonged to the genus of Halomonas. It had strong simultaneous nitrification and denitrification capability and could live in high-salinity environment.

Evaluation of denitrification potential of rotating biological contactors for treatment of municipal wastewater.

PubMed

Hanhan, O; Orhon, D; Krauth, Kh; Günder, B

2005-01-01

In this study the effect of retention time and rotation speed in the denitrification process in two full-scale rotating biological contactors (RBC) which were operated parallel and fed with municipal wastewater is evaluated. Each rotating biological contactor was covered to prevent oxygen input. The discs were 40% submerged. On the axle of one of the rotating biological contactors lamellas were placed (RBC1). During the experiments the nitrate removal performance of the rotating biological contactor with lamellas was observed to be less than the other (RBC2) since the lamellas caused oxygen diffusion through their movement. The highest nitrate removal observed was 2.06 g/m2.d achieved by a contact time of 28.84 minutes and a recycle flow of 1 l/s. The rotation speed during this set had the constant value of 0.8 min(-1). Nitrate removal efficiency on RBC1 was decreasing with increasing rotation speed. On the rotating biological contactor without lamellas no effect on denitrification could be determined within a speed range from 0.67 to 2.1 min-1. If operated in proper conditions denitrification on RBC is a very suitable alternative for nitrogen removal that can easily fulfil the nutrient limitations in coastal areas due to the rotating biological contactors economical benefits and uncomplicated handling.

Influences of the unsaturated, saturated, and riparian zones on the transport of nitrate near the Merced River, California, USA

USGS Publications Warehouse

Domagalski, Joseph L.; Phillips, S.P.; Bayless, E.R.; Zamora, C.; Kendall, C.; Wildman, R.A.; Hering, J.G.

2008-01-01

Transport and transformation of nitrate was evaluated along a 1-km groundwater transect from an almond orchard to the Merced River, California, USA, within an irrigated agricultural setting. As indicated by measurements of pore-water nitrate and modeling using the root zone water quality model, about 63% of the applied nitrogen was transported through a 6.5-m unsaturated zone. Transport times from recharge locations to the edge of a riparian zone ranged from approximately 6 months to greater than 100 years. This allowed for partial denitrification in horizons having mildly reducing conditions, and essentially no denitrification in horizons with oxidizing conditions. Transport times across a 50-100-m-wide riparian zone of less than a year to over 6 years and more strongly reducing conditions resulted in greater rates of denitrification. Isotopic measurements and concentrations of excess N2 in water were indicative of denitrification with the highest rates below the Merced River. Discharge of water and nitrate into the river was dependent on gradients driven by irrigation or river stage. The results suggest that the assimilative capacity for nitrate of the groundwater system, and particularly the riverbed, is limiting the nitrate load to the Merced River in the study area. ?? Springer-Verlag 2007.

Performance evaluation of pilot scale sulfur-oxidizing denitrification for treatment of metal plating wastewater.

PubMed

Flores, Angel S P; Gwon, Eun-Mi; Sim, Dong-Min; Nisola, Grace; Galera, Melvin M; Chon, Seung-Se; Chung, Wook-Jin; Pak, Dae-Won; Ahn, Zou Sam

2006-01-01

A full-scale and two pilot-scale upflow sulfur-oxidizing denitrification (SOD) columns were evaluated using metal plating wastewater as feed. The sludge was autotrophically enriched, and inoculated in the SOD columns attached to the effluent line of three metal plating wastewater treatment facilities. The effects of activated carbon and aeration were also studied, and found effective for the removal of suspended solids and ammonia, respectively. The results showed that the constituents, such as the total nitrogen, nitrates, nitrites, ammonia, chemical oxygen demand (COD), and heavy metals, were effectively removed. The pH was observed to be maintained at 7-8 due to the alkalinity supplied by the sulfur-calcium carbonate (SC) pellet. The denitrification efficiency and start-up period were observed to be affected by the influent quality. Chromium, iron, nickel, copper, and zinc--the major heavy metal components of the influent--were effectively reduced at certain concentrations. Other metal ions were also detected and reduced to undetectable concentrations, but no trends in the comparison with denitrification were observed. From the results it can be concluded that SOD is effective for the removal of nitrogen, particularly nitrates, without a drastic pH change, and can effectively remove minute concentrations of heavy metals and COD in metal plating wastewaters.

Comparison of APSIM and DNDC simulations of nitrogen transformations and N2O emissions.

PubMed

Vogeler, I; Giltrap, D; Cichota, R

2013-11-01

Various models have been developed to better understand nitrogen (N) cycling in soils, which is governed by a complex interaction of physical, chemical and biological factors. Two process-based models, the Agricultural Production Systems sIMulator (APSIM) and DeNitrification DeComposition (DNDC), were used to simulate nitrification, denitrification and nitrous oxide (N2O) emissions from soils following N input from either fertiliser or excreta deposition. The effect of environmental conditions on N transformations as simulated by the two different models was compared. Temperature had a larger effect in APSIM on nitrification, whereas in DNDC, water content produced a larger response. In contrast, simulated denitrification showed a larger response to temperature and also organic carbon content in DNDC. And while denitrification in DNDC is triggered by rainfall ≥5mm/h, in APSIM, the driving factor is soil water content, with a trigger point at water content at field capacity. The two models also showed different responses to N load, with nearly linearly increasing N2O emission rates with N load simulated by DNDC, and a lower rate by APSIM. Increasing rainfall intensity decreased APSIM-simulated N2O emissions but increased those simulated by DNDC. Copyright © 2012 Elsevier B.V. All rights reserved.

Nitrogen removal from landfill leachate via ex situ nitrification and sequential in situ denitrification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong Qi; Graduate School of Chinese Academy of Sciences, Beijing 100049; Li Daping

2009-04-15

Ex situ nitrification and sequential in situ denitrification represents a novel approach to nitrogen management at landfills. Simultaneous ammonia and organics removal was achieved in a continuous stirred tank reactor (CSTR). The results showed that the maximum nitrogen loading rate (NLR) and the maximum organic loading rate (OLR) was 0.65 g N l{sup -1} d{sup -1} and 3.84 g COD l{sup -1} d{sup -1}, respectively. The ammonia and chemical oxygen demand (COD) removal was over 99% and 57%, respectively. In the run of the CSTR, free ammonia (FA) inhibition and low dissolved oxygen (DO) were found to be key factorsmore » affecting nitrite accumulation. In situ denitrification was studied in a municipal solid waste (MSW) column by recalculating nitrified leachate from CSTR. The decomposition of MSW was accelerated by the recirculation of nitrified leachate. Complete reduction of total oxidized nitrogen (TON) was obtained with maximum TON loading of 28.6 g N t{sup -1} TS d{sup -1} and denitrification was the main reaction responsible. Additionally, methanogenesis inhibition was observed while TON loading was over 11.4 g N t{sup -1} TS d{sup -1} and the inhibition was enhanced with the increase of TON loading.« less

Short-term responses of soil nitrogen mineralization, nitrification and denitrification to prescribed burning in a suburban forest ecosystem of subtropical Australia.

PubMed

Zhang, Manyun; Wang, Weijin; Wang, Dianjie; Heenan, Marijke; Xu, Zhihong

2018-06-17

As an anthropogenic disturbance, prescribed burning may alter the biogeochemistries of nutrients, including nitrogen (N) cycling, in forest ecosystems. This study aimed to examine the changes in N mineralization, nitrification and denitrification rates following prescribed burning in a suburban forest located in subtropical Australia and assess the interactive relationships among soil properties, functional gene abundances and N transformation rates. After a prescribed burning event, soil pH value increased, but soil labile carbon and mineral N contents decreased. Net N mineralization rates, potential nitrification rates and ammonium-oxidizing archaea and bacteria (AOA and AOB) amoA gene abundances in the soils all increased after 3 months of the prescribed burning. However, the abundances of different functional genes related to denitrification changed differently after the prescribed burning. The net N mineralization rates could be best described by soil abiotic properties, rather than functional gene abundances. In contrast, potential denitrification rates were positively related to soil nirK gene abundances. Potential nitrification rates could be influenced by both soil chemical and microbial properties. The results revealed that the prescribed burning might increase N mineralization and nitrification rates in the forest soil. Copyright © 2018 Elsevier B.V. All rights reserved.

Autohydrogenotrophic denitrification of drinking water using a polyvinyl chloride hollow fiber membrane biofilm reactor.

PubMed

Zhang, Yanhao; Zhong, Fohua; Xia, Siqing; Wang, Xuejiang; Li, Jixiang

2009-10-15

A hollow fiber membrane biofilm reactor (MBfR) using polyvinyl chloride (PVC) hollow fiber was evaluated in removing nitrate form contaminated drinking water. During a 279-day operation period, the denitrification rate increased gradually with the increase of influent nitrate loading. The denitrification rate reached a maximum value of 414.72 g N/m(3)d (1.50 g N/m(2)d) at an influent NO(3)(-)-N concentration of 10mg/L and a hydraulic residence time of 37.5 min, and the influent nitrate was completely reduced. At the same time, the effluent quality analysis showed the headspace hydrogen content (3.0%) was lower enough to preclude having an explosive air. Under the condition of the influent nitrate surface loading of 1.04 g N/m(2)d, over 90% removal efficiencies of the total nitrogen and nitrate were achieved at the hydrogen pressure above 0.04 MPa. The results of denaturing gel gradient electrophoresis (DGGE), 16S rDNA gene sequence analysis, and hierarchical cluster analysis showed that the microbial community structures in MBfR were of low diversity, simple and stable at mature stages; and the beta-Proteobacteria, including Rhodocyclus, Hydrogenophaga, and beta-Proteobacteria HTCC379, probably play an important role in autohydrogenotrophic denitrification.

Bioelectrochemical denitrification on biocathode buried in simulated aquifer saturated with nitrate-contaminated groundwater.

PubMed

Nguyen, Van Khanh; Park, Younghyun; Yu, Jaecheul; Lee, Taeho

2016-08-01

Nitrate contamination in aquifers has posed human health under high risk because people still rely on groundwater withdrawn from aquifers as drinking water and running water sources. These days, bioelectrochemical technologies have shown a great number of benefits for nitrate remediation via autotrophic denitrification in groundwater. This study tested the working possibility of a denitrifying biocathode when installed into a simulated aquifer. The reactors were filled with sand and synthetic groundwater at various ratios (10, 50, and 100 %) to clarify the effect of various biocathode states (not-buried, half-buried, and fully buried) on nitrate reduction rate and microbial communities. Decreases in specific nitrate reduction rates were found to be correlated with increases in sand/medium ratios. A specific nitrate reduction rate of 322.6 mg m(-2) day(-1) was obtained when the biocathode was fully buried in an aquifer. Microbial community analysis revealed slight differences in the microbial communities of biocathodes at various sand/medium ratios. Various coccus- and rod-shaped bacteria were found to contribute to bioelectrochemical denitrification including Thiobacillus spp. and Paracoccus spp. This study demonstrated that the denitrifying biocathode could work effectively in a saturated aquifer and confirmed the feasibility of in situ application of microbial electrochemical denitrification technology.

Characterization of novel Bacillus strain N31 from mariculture water capable of halophilic heterotrophic nitrification-aerobic denitrification.

PubMed

Huang, Fei; Pan, Luqing; Lv, Na; Tang, Xianming

2017-11-01

The development of an intensive aquaculture industry has been accompanied by increasing environmental impacts, especially nitrogen pollution. In this study, a novel halophilic bacterium capable of heterotrophic nitrification and aerobic denitrification was isolated from mariculture water and identified as Bacillus litoralis N31. The efficiency of ammonium, nitrite and nitrate removal by N31 were 86.3%, 89.3% and 89.4%, respectively, after a 48-h cultivation in sole N-source medium with initial nitrogen approximately 20 mg/L. However, ammonium was removed preferentially, and no obvious nitrite accumulated during the simultaneous nitrification and denitrification process in mixed N-source media. The existence of hao, napA and nirS genes further proved the heterotrophic nitrification-aerobic denitrification capability of N31. The optimal conditions for ammonium removal were 30°C, initial pH 7.5-8.5, C/N ratio 5-20 and salinity 30-40‰, and the nitrification rate of N31 increased with increasing initial [Formula: see text] from 10 to 250 mg/L. Biosecurity assessment with shrimp indicated that strain N31 could be applied in the marine aquaculture industry safely for culture water remediation and effluent treatment. Copyright © 2017 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Simultaneous biological removal of nitrogen, carbon and sulfur by denitrification.

PubMed

Reyes-Avila, Jesús; Razo-Flores, Elías; Gomez, Jorge

2004-01-01

Refinery wastewaters may contain aromatic compounds and high concentrations of sulfide and ammonium which must be removed before discharging into water bodies. In this work, biological denitrification was used to eliminate carbon, nitrogen and sulfur in an anaerobic continuous stirred tank reactor of 1.3 L and a hydraulic retention time of 2 d. Acetate and nitrate at a C/N ratio of 1.45 were fed at loading rates of 0.29 kg C/m3 d and 0.2 kg N/m3 d, respectively. Under steady-state denitrifying conditions, the carbon and nitrogen removal efficiencies were higher than 90%. Also, under these conditions, sulfide (S(2-)) was fed to the reactor at several sulfide loading rates (0.042-0.294 kg S(2-)/m3 d). The high nitrate removal efficiency of the denitrification process was maintained along the whole process, whereas the carbon removal was 65% even at sulfide loading rates of 0.294 kg S(2-)/m3 d. The sulfide removal increased up to approximately 99% via partial oxidation to insoluble elemental sulfur (S0) that accumulated inside the reactor. These results indicated that denitrification is a feasible process for the simultaneous removal of nitrogen, carbon and sulfur from effluents of the petroleum industry.

Use of food waste-recycling wastewater as an alternative carbon source for denitrification process: A full-scale study.

PubMed

Kim, Eunji; Shin, Seung Gu; Jannat, Md Abu Hanifa; Tongco, Jovale Vincent; Hwang, Seokhwan

2017-12-01

Using organic wastes as an alternative to commercial carbon sources could be beneficial by reducing costs and environmental impacts. In this study, food waste-recycling wastewater (FRW) was evaluated as an alternative carbon source for biological denitrification over a period of seven months in a full-scale sewage wastewater treatment plant. The denitrification performance was stable with a mean nitrate removal efficiency of 97.2%. Propionate was initially the most persistent volatile fatty acid, but was completely utilized after 19days. Eubacteriacea, Saprospiraceae, Rhodocyclaceae and Comamonadaceae were the major bacterial families during FRW treatment and were regarded as responsible for hydrolysis (former two) and nitrate removal (latter two) of FRW. These results demonstrate that FRW can be an effective external carbon source; process stabilization was linked to the acclimation and function of bacterial populations to the change of carbon source. Copyright © 2017 Elsevier Ltd. All rights reserved.

[Identification and Nitrogen Removal Characteristics of a Heterotrophic Nitrification-Aerobic Denitrification Strain Isolated from Marine Environment].

PubMed

Sun, Qing-hua; Yu, De-shuang; Zhang, Pei-yu; Lin, Xue-zheng; Li, Jin

2016-02-15

A heterotrophic nitrification-aerobic denitrification strain named y5 was isolated from marine environment by traditional microbial isolation method using seawater as medium. It was identified as Klebsiella sp. based on the morphological, physiological and 16S rRNA sequence analysis. The experiment results showed that the optimal carbon resource was sodium citrate; the optimal pH was 7.0; and the optimal C/N was 17. The strain could use NH4Cl, NaNO2 and KNO3 as sole nitrogen source, and the removal efficiencies were77.07%, 64.14% and 100% after 36 hours, respectively. The removal efficiency reached 100% after 36 hours in the coexistence of NH4Cl, NaNO2 and KNO3. The results showed that the strain y5 had independent and efficient heterotrophic nitrification and aerobic denitrification activities in high salt wastewater.

Nitrogen Removal Characteristics of Pseudomonas putida Y-9 Capable of Heterotrophic Nitrification and Aerobic Denitrification at Low Temperature.

PubMed

Xu, Yi; He, Tengxia; Li, Zhenlun; Ye, Qing; Chen, Yanli; Xie, Enyu; Zhang, Xue

2017-01-01

The cold-adapted bacterium Pseudomonas putida Y-9 was investigated and exhibited excellent capability for nitrogen removal at 15°C. The strain capable of heterotrophic nitrification and aerobic denitrification could efficiently remove ammonium, nitrate, and nitrite at an average removal rate of 2.85 mg, 1.60 mg, and 1.83 mg NL -1  h -1 , respectively. Strain Y-9 performed nitrification in preference to denitrification when ammonium and nitrate or ammonium and nitrite coexisted in the solution. Meantime, the presence of nitrate had no effect on the ammonium removal rate of strain Y-9, and yet the presence of high concentration of nitrite would inhibit the cell growth and decrease the nitrification rate. The experimental results indicate that P. putida Y-9 has potential application for the treatment of wastewater containing high concentrations of ammonium along with its oxidation products at low temperature.

Implications of electric potentials applied on a denitrifying process.

PubMed

Cadena Ramírez, Arturo; Texier, Anne-Claire; González, Ignacio; Gómez, Jorge

2018-03-20

The effect of three electric potentials (EP) (+104, -187 and -279 mV) applied to the denitrifying process was explored. It was observed that the denitrifying sludge was able to support the oxidation of p-cresol with the application of the EP in the absence of nitrate, but it was unable to drive the denitrification without an organic electron donor. On denitrification, the applied EP uncoupled the oxidative from the reductive process, favoring the p-cresol oxidation over the production of N2. Additionally, biochemical level effects were observed. At +104 and -279 mV potentials, the nitrate and nitrite consumption was affected as well as the p-hydroxybenzoate transformation. However, at -187 mV, effects seemed to occur only on the transport of substrates. This paper presents evidence that denitrification has very characteristic and different physiological behaviors for each EP assayed.

The Effects of Different External Carbon Sources on Nitrous Oxide Emissions during Denitrification in Biological Nutrient Removal Processes

NASA Astrophysics Data System (ADS)

Hu, Xiang; Zhang, Jing; Hou, Hongxun

2018-01-01

The aim of this study was to investigate the effects of two different external carbon sources (acetate and ethanol) on the nitrous oxide (N2O) emissions during denitrification in biological nutrient removal processes. Results showed that external carbon source significantly influenced N2O emissions during the denitrification process. When acetate served as the external carbon source, 0.49 mg N/L and 0.85 mg N/L of N2O was produced during the denitrificaiton processes in anoxic and anaerobic/anoxic experiments, giving a ratio of N2O-N production to TN removal of 2.37% and 4.96%, respectively. Compared with acetate, the amount of N2O production is negligible when ethanol used as external carbon addition. This suggested that ethanol is a potential alternative external carbon source for acetate from the point of view of N2O emissions.

Nitrogen-limited mangrove ecosystems conserve N through dissimilatory nitrate reduction to ammonium.

PubMed

Fernandes, Sheryl Oliveira; Bonin, Patricia C; Michotey, Valérie D; Garcia, Nicole; LokaBharathi, P A

2012-01-01

Earlier observations in mangrove sediments of Goa, India have shown denitrification to be a major pathway for N loss. However, percentage of total nitrate transformed through complete denitrification accounted for <0-72% of the pore water nitrate reduced. Here, we show that up to 99% of nitrate removal in mangrove sediments is routed through dissimilatory nitrate reduction to ammonium (DNRA). The DNRA process was 2x higher at the relatively pristine site Tuvem compared to the anthropogenically-influenced Divar mangrove ecosystem. In systems receiving low extraneous nutrient inputs, this mechanism effectively conserves and re-circulates N minimizing nutrient loss that would otherwise occur through denitrification. In a global context, the occurrence of DNRA in mangroves has important implications for maintaining N levels and sustaining ecosystem productivity. For the first time, this study also highlights the significance of DNRA in buffering the climate by modulating the production of the greenhouse gas nitrous oxide.

Impact of Aquifer Heterogeneities on Autotrophic Denitrification.

NASA Astrophysics Data System (ADS)

McCarthy, A.; Roques, C.; Selker, J. S.; Istok, J. D.; Pett-Ridge, J. C.

2015-12-01

Nitrate contamination in groundwater is a big challenge that will need to be addressed by hydrogeologists throughout the world. With a drinking water standard of 10mg/L of NO3-, innovative techniques will need to be pursued to ensure a decrease in drinking water nitrate concentration. At the pumping site scale, the influence and relationship between heterogeneous flow, mixing, and reactivity is not well understood. The purpose of this project is to incorporate both physical and chemical modeling techniques to better understand the effect of aquifer heterogeneities on autotrophic denitrification. We will investigate the link between heterogeneous hydraulic properties, transport, and the rate of autotrophic denitrification. Data collected in previous studies in laboratory experiments and pumping site scale experiments will be used to validate the models. The ultimate objective of this project is to develop a model in which such coupled processes are better understood resulting in best management practices of groundwater.

Nachlassender Nitratabbau im Grundwasser und deren Folgen - abgestufte modellgestützte Bewertungsansätze

NASA Astrophysics Data System (ADS)

Wilde, Siegfried; Hansen, Carsten; Bergmann, Axel

2017-11-01

In many water catchment areas, denitrification processes in aquifers ensure lower nitrate contamination in groundwater. The denitrification capacity of aquifers mainly depends on organic carbon and iron disulfide which, being finite resources, are susceptible to depletion. This will generally result in increasing nitrate concentrations in groundwater. Within the scope of a DVGW-supported research project, consequences of a decreasing denitrification capacity in aquifers have been investigated and evaluated in 38 water catchment areas. A scaled four-stage evaluation procedure enables adapting to specific regional settings and assessment requirements. Based on measured and predicted nitrate concentrations in raw water, the "sustainability" of groundwater resources management has been assessed. Hydrogeochemical models and methods of varying complexity were applied. Thus, consequences and risks of nitrate pollution in raw water can be identified and assessed, and effects of groundwater protection measures can be shown.

Variation in benthic metabolism and nitrogen cycling across clam aquaculture sites.

PubMed

Murphy, Anna E; Nizzoli, Daniele; Bartoli, Marco; Smyth, Ashley R; Castaldelli, Giuseppe; Anderson, Iris C

2018-02-01

As bivalve aquaculture expands globally, an understanding of how it alters nitrogen is important to minimize impacts. This study investigated nitrogen cycling associated with clam aquaculture in the Sacca di Goro, Italy (Ruditapes philipinarum) and the Eastern Shore, USA (Mercenaria mercenaria). Ammonium and dissolved oxygen fluxes were positively correlated with clam biomass; R. philippinarum consumed ~6 times more oxygen and excreted ~5 times more NH 4 + than M. mercenaria. There was no direct effect of clams on denitrification or dissimilatory nitrate reduction to ammonium (DNRA); rather, nitrate availability controlled the competition between these microbial pathways. Highest denitrification rates were measured at sites where both water column nitrate and nitrification were elevated due to high densities of a burrowing amphipod (Corophium sp.). DNRA exceeded denitrification where water column nitrate was low and nitrification was suppressed in highly reduced sediment, potentially due to low hydrologic flow and high clam densities. Copyright © 2017 Elsevier Ltd. All rights reserved.

Effect of UV on De-NOx performance and microbial community of a hybrid catalytic membrane biofilm reactor

NASA Astrophysics Data System (ADS)

Chen, Zhouyang; Huang, Zhensha; He, Yiming; Xiao, Xiaoliang; Wei, Zaishan

2018-02-01

The hybrid membrane catalytic biofilm reactor provides a new way of flue gas denitration. However, the effects of UV on denitrification performance, microbial community and microbial nitrogen metabolism are still unknown. In this study, the effects of UV on deNO x performance, nitrification and denitrification, microbial community and microbial nitrogen metabolism of a bench scale N-TiO2/PSF hybrid catalytic membrane biofilm reactor (HCMBR) were evaluated. The change from nature light to UV in the HCMBR leads to the fall of NO removal efficiency of HCMBR from 92.8% to 81.8%. UV affected the microbial community structure, but did not change microbial nitrogen metabolism, as shown by metagenomics sequencing method. Some dominant phyla, such as Gammaproteobacteria, Bacteroidetes, Firmicutes, Actinobacteria, and Alphaproteobacteria, increased in abundance, whereas others, such as Proteobacteria and Betaproteobacteria, decreased. There were nitrification, denitrification, nitrogen fixation, and organic nitrogen metabolism in the HCMBR.

In situ denitrification and DNRA rates in groundwater beneath an integrated constructed wetland.

PubMed

Jahangir, M M R; Fenton, O; Müller, C; Harrington, R; Johnston, P; Richards, K G

2017-03-15

Evaluation of the environmental benefits of constructed wetlands (CWs) requires an understanding of their impacts on the groundwater quality under the wetlands. Empirical mass-balance (nitrogen in/nitrogen out) approaches for estimating nitrogen (N) removal in CWs do not characterise the final fate of N; where nitrate (NO 3 - -N) could be reduced to either ammonium (NH 4 + -N) or N 2 with the potential for significant production of N 2 O. Herein, in situ denitrification and DNRA (dissimilatory nitrate reduction to ammonium) rates were measured in groundwater beneath cells of an earthen lined integrated constructed wetland (ICW, used to remove the nutrients from municipal wastewater) using the 15 N-enriched NO 3 - -N push-pull method. Experiments were conducted utilising replicated (n = 3) shallow (1 m depth) and deep (4 m depth) piezometers installed along two control planes. These control planes allowed for the assessment of groundwater underlying high (Cell 2, septic tank waste) and low (Cell 3) load cells of the ICW. Background piezometers were also installed off-site. Results showed that denitrification (N 2 O-N + N 2 -N) and DNRA were major NO 3 - -N consumption processes accounting together for 54-79% of the total biochemical consumption of the applied NO 3 - -N. Of which 14-16% and 40-63% were consumed by denitrification and DNRA, respectively. Both processes differed significantly across ICW cells indicating that N transformation depends on nutrient loading rates and were significantly higher in shallow compared to the deep groundwater. In such a reduced environment (low dissolved oxygen and low redox potential), higher DNRA over the denitrification rate can be attributed to the high C concentration and high TC/NO 3 - -N ratio. Low pH (6.5-7.1) in this system might have limited denitrification to some extent to an incomplete state, evidenced by a high N 2 O-N/(N 2 O-N+N 2 -N) ratio (0.35 ± 0.17, SE). A relatively higher N 2 O-N/(N 2 O-N+N 2 -N) ratio and higher DNRA rate over denitrification, suggest that the end products of N transformations are reactive. This N 2 O can be consumed to N 2 and/or emitted to the atmosphere. The DNRA rate and accumulation of NH 4 + -N indicated that the ICW created a suitable groundwater biogeochemical environment that enhanced NO 3 - -N reduction to NH 4 + -N. This study showed that CWs significantly influence NO 3 - -N attenuation to reactive forms of N in the groundwater beneath them and that solely focusing on within wetland NO 3 - -N attenuation can underestimate the environmental benefits of wetlands. Copyright © 2017 Elsevier Ltd. All rights reserved.

Carbon availability and the distribution of denitrifying organisms influence N2O production in the hyporheic zone

NASA Astrophysics Data System (ADS)

Farrell, T. B.; Quick, A. M.; Reeder, W. J.; Tonina, D.; Benner, S. G.; Feris, K. P.

2013-12-01

It has been estimated that 10% of greenhouse gas N2O emissions take place within river networks, with the majority of these processes occurring in the hyporheic zone (HZ). These emissions are the result of microbially-mediated nitrogen transformations (i.e. nitrification and denitrification) and yet the role of microbial distribution and function in this complex system is not well understood. We hypothesized that the concentration and availability of organic carbon influences the production of redox gradients, DIN (via mineralization, nitrification, and loss of DIN via denitrification), and ultimately N2O production in the HZ by controlling the distribution and activity of denitrifying microbial communities. Further, we hypothesized that by linking the distribution of denitrifying microbial communities and their associated functional genes (i.e. the relative abundance of N2O vs. N2 producing genetic elements) to flow dynamics and biogeochemical processes, we can begin to better understand what controls N2O production in hyporheic networks. To address these hypotheses we performed a series of column experiments designed to determine the influence of carbon concentration on redox gradient development and N2O flux along a one-dimensional flow path. Intact sediment cores were amended with 0.01%, 0.05%, 0.15%, and 0.5% dry mass riparian vegetation (>90% Populus sp.) to serve as an endogenous particulate organic matter (POM) source. During quasi-steady state conditions dissolved oxygen (DO), NH4+, NO3-, and N2O levels were measured. As predicted, a positive relationship between the level of POM amendment and development of a gradient of oxic and anoxic conditions was observed. There was negligible N2O production within columns inoculated with 0.01% and 0.05% DOC likely because these POC treatments were too low to create anoxic conditions necessary to stimulate denitrification. Maximum N2O flux was observed with the 0.15% POC treatment. Both oxic and anoxic conditions were present in this treatment; conditions suitable for both nitrification and denitrification. However, N2O production was only observed where DO was below detection indicating denitrification as the source of N2O rather than nitrification. Minimal N2O flux was observed in the 0.5% POC treatment. This column was mostly anoxic, likely not supporting nitrification, and thereby limiting denitrification potential. During denitrification, expression of nitrous oxide reductase can enzymatically mediate the reduction of N2O to N2 and is encoded for by the nosZ gene. On-going work includes quantifying the distribution of the nosZ gene within each treatment to determine if the relative abundance of this genetic element correlates with N2O production or if production is primarily controlled by carbon availability and redox conditions.

Can soil denitrification models be validated with the N2/Ar-method? Results from a comparison between DENUZ and the N2/Ar-method in Lower Saxony (Germany)

NASA Astrophysics Data System (ADS)

Eschenbach, Wolfram; Elbracht, Jörg; Höper, Heinrich; Kunkel, Ralf; Well, Reinhard; Wendland, Frank

2014-05-01

Diffuse NO3- emissions derived from agricultural N surpluses are the main cause of NO3- pollution of aquifers and open water bodies. Denitrification is the key process for the attenuation of these anthropogenic NO3- concentrations in soils and groundwater. Since the greenhouse gas N2O is an obligate intermediate of denitrification this process is also a major regulator of N2O emissions from soils and indirect N2O fluxes from aquifers and open water bodies which result from NO3--leaching. To predict NO3- leaching from the agricultural field and asses the maximal permissible agricultural N surplus to guarantee a mean long-term nitrate concentration in percolation water below 50 mg NO3-/l validated, soil denitrification models are needed. Validation of models predicting denitrification and NO3- leaching is difficult due to lack of suitable data sets and the complexity of denitrification. Moreover, existing groundwater well networks can currently not be used to check the modelled NO3- leaching because NO3- itself might be already partly or totally reduced in the groundwater below soils. In this study we assessed the possibility of validating the soil denitrification model DENUZ (Wendland et al., 2009) with calculated initial NO3- concentrations in the groundwater at the time of groundwater recharge (NO3-t0). NO3-t0 values can be derived from groundwater samples of normal groundwater monitoring wells using the N2/Ar-method (Weymann et al., 2008). Therefore we compare NO3- emission concentrations (pot-NO3-) obtained by groundwater modelled using DENUZ with NO3-t0 values, calculated from measured dissolved gas concentrations (N2, N2O, Ar) and measured NO3- in groundwater samples. We analysed groundwater samples from 484 groundwater monitoring wells throughout Lower-Saxony (Germany). Median NO3- and NO3-t0 concentrations were 0.3 and 30 mg NO3- l-1 respectively, showing that a considerable proportion of the anthropogenic N-surplus is denitrified within the saturated zone. DENUZ and N2/Ar-method results were compared using the Bland-Altman-Approach (Bland and Altman, 1986). Therefore we analysed the repeatability of the N2/Ar-method at groundwater wells and calculated the bias between DENUZ and N2/Ar-method. Results showed that there is a strong scatter between both methods at individual monitoring wells, which resulted in very wide 95%-limits of agreement between both methods. The 95%-limits of repeatability of the N2/Ar-method were 1.5±47 mg NO3-t0 L-1. These wide limits show that either time series of NO3-t0 values are needed to check denitrification model results in the catchment area of a single monitoring well or that groups of monitoring wells are needed to check denitrification models with the N2/Ar-method. Results for groups of monitoring wells of different hydrogeologic units showed that DENUZ and N2/Ar-method where in good agreement for glacial outwash plains and moraine deposits. In lowland regions however, where hydromorphic soils are more widespread, DENUZ modelled systematically 3 to 27 % higher NO3- emissions to the groundwater than the N2/Ar-method. There, denitrification processes in soil and groundwater may interfere with each other. Differences between modelled and measured NO3- at the groundwater surface at individual monitoring wells indicated that about 100 monitoring wells are needed to capture a possible bias between the N2/Ar-method and DENUZ with sufficient precision (i.e. narrow 95% confidence intervals). References: Bland, J. M., and Altman, D. G.: STATISTICAL METHODS FOR ASSESSING AGREEMENT BETWEEN TWO METHODS OF CLINICAL MEASUREMENT, Lancet, 1, 307-310, 1986. Wendland, F., Behrendt, H., Gomann, H., Hirt, U., Kreins, P., Kuhn, U., Kunkel, R., and Tetzlaff, B.: Determination of nitrogen reduction levels necessary to reach groundwater quality targets in large river basins: the Weser basin case study, Germany, Nutr. Cycl. Agroecosyst., 85, 63-78, 10.1007/s10705-009-9248-9, 2009. Weymann, D., Well, R., Flessa, H., von der Heide, C., Deurer, M., Meyer, K., Konrad, C., and Walther, W.: Groundwater N2O emission factors of nitrate-contaminated aquifers as derived from denitrification progress and N2O accumulation, Biogeosciences, 5, 1215-1226, 2008.

Nitrous Oxide Production in the Eastern Tropical South Pacific Upwelling Zone

NASA Astrophysics Data System (ADS)

Ji, Q.; Babbin, A. R.; Ward, B. B.

2014-12-01

The Eastern Tropical South Pacific upwelling zone, where low to undetectable oxygen concentrations exist in the water column, is a region of intense nitrous oxide (N2O) production in the ocean. N2O production is generally attributed to nitrification and denitrification in oxic and anoxic waters, respectively, with overlap under suboxic conditions. Seawater samples from different depths and in situ oxygen concentrations were incubated with 15N tracer labeled substrates (NH4+, NO2- and NO3-) to measure potential N2O production rates. These rates were used to determine contributions of nitrification and denitrification to total N2O production. N2O reached maximum concentrations at the base of oxycline just above the oxygen deficient zone (ODZ) and nitrification was the major production pathway. The N2O yield from nitrification, i.e., the ratio of N2O to NO2- production from NH4+, increased from ~0.04% to ~1% as oxygen concentration decreased from 100% to ~1% saturation. This relationship is consistent with culture studies showing increased N2O yield from nitrification at low oxygen; and thus with high N2O production rate from nitrification in the oxycline. N2O production from NO3- was detected at the base of oxycline. Highest N2O production rates (up to 10 nM d-1) were detected at the top of the ODZ, with denitrification as the major pathway. At the secondary nitrite maximum within the core of the ODZ, rates of N2O production from denitrification were relatively high despite low N2O concentration, suggesting N2O reduction to N2 must be co-occurring. This implies rapid N2O turnover by denitrification within the ODZ and a close coupling between production and consumption. These results indicate that oxygen concentrations greatly influence both the magnitude of N2O production and the relative contributions of nitrification and denitrification. Because most N2O production occurred in the oxycline and in the uppermost layer of the ODZ, anticipated spatial expansion of these zones could increase the extent of N2O production and the marine N2O efflux to the atmosphere.

Can Membrane Inlet Mass Spectrometer Measure Short-term Denitrification Enzyme Activity and Denitrification Potentials of Soils?

NASA Astrophysics Data System (ADS)

Khalil, M. I.; Richards, K. G.

2009-04-01

Denitrifier population size and potential activity combined with the relevant environmental factors regulate the rates of denitrification in terrestrial and aquatic ecosystems. Due to the high atmospheric background of di-nitrogen (N2), denitrification enzyme activity (DEA) in soils is traditionally measured using the acetylene block or stable isotope techniques under non-limiting substrates and anaerobic/saturated conditions for periods from a few hours to several days so as to estimate denitrification potential (DP). This research investigated the estimation of DEA and DP by quantifying the N2/Ar ratio changes in waters/sediments using membrane inlet mass spectrometry (MIMS). Two experiments were conducted with soils of A, B and C horizons collected from grazed grassland to obtain optimal NO3- and available carbon (C) rates. In experiment 1, 30 g soil (oven dry basis) followed by helium-flushed deionized water was taken in triplicate 160 mL glass bottles and sealed with rubber stoppers without any air entrapments. Then N as potassium nitrate (0 to 120 mg NO3 - N kg-1 soil) and readily available C as glucose (0 to 240 mg glucose-C) plus 30 mg NO3 - N, kg-1 soil were amended. Laboratory incubation was performed in the dark at 21oC under water to reduce the risk of N2 contamination. After six hours, the treated water samples were transferred into 12 mL exetainers and kept under water at 4oC before analysis using MIMS. The N2/Ar ratios, representing DEA, varied between soil horizons and declined with decreasing soil depths. The maximum peak for N2/Ar ratios were observed with the 30 mg NO3 - N kg-1 soil in all soil horizons and coupled with the 60 mg glucose-C kg-1 soil for C horizon, and 120 mg glucose-C kg-1 for A and B horizons. Experiment 2 was conducted to assess simulated unsaturated and saturated subsoil (C horizon) denitrification capacity (NO3 - Nonly amendment), and DP (both C and N amendment) using the same methodology as experiment 1 and incubated for 3 days using groundwater. The optimal substrate rates (30 mg NO3 - N

Effect of organic enrichment and thermal regime on denitrification and dissimilatory nitrate reduction to ammonium (DNRA) in hypolimnetic sediments of two lowland lakes.

PubMed

Nizzoli, Daniele; Carraro, Elisa; Nigro, Valentina; Viaroli, Pierluigi

2010-05-01

We analyzed benthic fluxes of inorganic nitrogen, denitrification and dissimilatory nitrate reduction to ammonium (DNRA) rates in hypolimnetic sediments of lowland lakes. Two neighbouring mesotrophic (Ca' Stanga; CS) and hypertrophic (Lago Verde; LV) lakes, which originated from sand and gravel mining, were considered. Lakes are affected by high nitrate loads (0.2-0.7 mM) and different organic loads. Oxygen consumption, dissolved inorganic carbon, methane and nitrogen fluxes, denitrification and DNRA were measured under summer thermal stratification and late winter overturn. Hypolimnetic sediments of CS were a net sink of dissolved inorganic nitrogen (-3.5 to -4.7 mmol m(-2)d(-1)) in both seasons due to high nitrate consumption. On the contrary, LV sediments turned from being a net sink during winter overturn (-3.5 mmol m(-2)d(-1)) to a net source of dissolved inorganic nitrogen under summer conditions (8.1 mmol m(-2)d(-1)), when significant ammonium regeneration was measured at the water-sediment interface. Benthic denitrification (0.7-4.1 mmol m(-2)d(-1)) accounted for up to 84-97% of total NO(3)(-) reduction and from 2 to 30% of carbon mineralization. It was mainly fuelled by water column nitrate. In CS, denitrification rates were similar in winter and in summer, while in LV summer rates were 4 times lower. DNRA rates were generally low in both lakes (0.07-0.12 mmol m(-2)d(-1)). An appreciable contribution of DNRA was only detected in the more reducing sediments of LV in summer (15% of total NO(3)(-) reduction), while during the same period only 3% of reduced NO(3)(-) was recycled into ammonium in CS. Under summer stratification benthic denitrification was mainly nitrate-limited due to nitrate depletion in hypolimnetic waters and parallel oxygen depletion, hampering nitrification. Organic enrichment and reducing conditions in the hypolimnetic sediment shifted nitrate reduction towards more pronounced DNRA, which resulted in the inorganic nitrogen recycling and retention within the bottom waters. The prevalence of DNRA could favour the accumulation of mineral nitrogen with detrimental effects on ecosystem processes and water quality. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Nitrous oxide nitrification and denitrification 15N enrichment factors from Amazon forest soils.

PubMed

Pérez, Tibisay; Garcia-Montiel, Diana; Trumbore, Susan; Tyler, Stanley; de Camargo, Plínio; Moreira, Marcelo; Piccolo, Marisa; Cerri, Carlos

2006-12-01

The isotopic signatures of 15N and 18O in N2O emitted from tropical soils vary both spatially and temporally, leading to large uncertainty in the overall tropical source signature and thereby limiting the utility of isotopes in constraining the global N2O budget. Determining the reasons for spatial and temporal variations in isotope signatures requires that we know the isotope enrichment factors for nitrification and denitrification, the two processes that produce N2O in soils. We have devised a method for measuring these enrichment factors using soil incubation experiments and report results from this method for three rain forest soils collected in the Brazilian Amazon: soil with differing sand and clay content from the Tapajos National Forest (TNF) near Santarém, Pará, and Nova Vida Farm, Rondônia. The 15N enrichment factors for nitrification and denitrification differ with soil texture and site: -111 per thousand +/- 12 per thousand and -31 per thousand +/- 11 per thousand for a clay-rich Oxisol (TNF), -102 per thousand +/- 5 per thousand and -45 per thousand +/- 5 per thousand for a sandier Ultisol (TNF), and -10.4 per thousand +/- 3.5 per thousand (enrichment factor for denitrification) for another Ultisol (Nova Vida) soil, respectively. We also show that the isotopomer site preference (delta15Nalpha - delta15Nbeta, where alpha indicates the central nitrogen atom and beta the terminal nitrogen atom in N2O) may allow differentiation between processes of production and consumption of N2O and can potentially be used to determine the contributions of nitrification and denitrification. The site preferences for nitrification and denitrification from the TNF-Ultisol incubated soils are: 4.2 per thousand +/- 8.4 per thousand and 31.6 per thousand +/- 8.1 per thousand, respectively. Thus, nitrifying and denitrifying bacteria populations under the conditions of our study exhibit significantly different 15N site preference fingerprints. Our data set strongly suggests that N2O isotopomers can be used in concert with traditional N2O stable isotope measurements as constraints to differentiate microbial N2O processes in soil and will contribute to interpretations of the isotopic site preference N2O values found in the free troposphere.

Substrate-dependent denitrification of abundant probe-defined denitrifying bacteria in activated sludge.

PubMed

Morgan-Sagastume, Fernando; Nielsen, Jeppe Lund; Nielsen, Per Halkjaer

2008-11-01

The denitrification capacity of different phylogenetic bacterial groups was investigated on addition of different substrates in activated sludge from two nutrient-removal plants. Nitrate/nitrite consumption rates (CRs) were calculated from nitrate and nitrite biosensor, in situ measurements. The nitrate/nitrite CRs depended on the substrate added, and acetate alone or combined with other substrates yielded the highest rates (3-6 mg N gVSS(-1) h(-1)). The nitrate CRs were similar to the nitrite CRs for most substrates tested. The structure of the active denitrifying population was investigated using heterotrophic CO2 microautoradiography (HetCO2-MAR) and FISH. Probe-defined denitrifiers appeared as specialized substrate utilizers despite acetate being preferentially used by most of them. Azoarcus and Accumulibacter abundance in the two different sludges was related to differences in their substrate-specific nitrate/nitrite CRs. Aquaspirillum-related bacteria were the most abundant potential denitrifiers (c. 20% of biovolume); however, Accumulibacter (3-7%) and Azoarcus (2-13%) may have primarily driven denitrification by utilizing pyruvate, ethanol, and acetate. Activated sludge denitrification was potentially conducted by a diverse, versatile population including not only Betaproteobacteria (Aquaspirillum, Thauera, Accumulibacter, and Azoarcus) but also some Alphaproteobacteria and Gammaproteobacteria, as indicated by the assimilation of 14CO2 by these probe-defined groups with a complex substrate mixture as an electron donor and nitrite as an electron acceptor in HetCO2-MAR-FISH tests.

Assessing the fate of explosives derived nitrate in mine waste rock dumps using the stable isotopes of oxygen and nitrogen.

PubMed

Hendry, M Jim; Wassenaar, Leonard I; Barbour, S Lee; Schabert, Marcie S; Birkham, Tyler K; Fedec, Tony; Schmeling, Erin E

2018-05-29

Ammonium nitrate (NH 4 NO 3 ) mixed with fuel oil is a common blasting agent used to fragment rock into workable size fractions at mines throughout the world. The decomposition and oxidation of undetonated explosives can result in high NO 3 - concentrations in waters emanating from waste rock dumps. We used the stable isotopic composition of NO 3 - (δ 15 N- and δ 18 O-NO 3 - ) to define and quantify the controls on NO 3 - composition in waste rock dumps by studying water-unsaturated and saturated conditions at nine coal waste rock dumps located in the Elk Valley, British Columbia, Canada. Estimates of the extent of nitrification of NH 4 NO 3 in oxic zones in the dumps, initial NO 3 - concentrations prior to denitrification, and the extent of NO 3 - removal by denitrification in sub-oxic to anoxic zones are provided. δ 15 N data from unsaturated waste rock dumps confirm NO 3 - is derived from blasting. δ 15 N- and δ 18 O-NO 3 - data show extensive denitrification can occur in saturated waste rock and in localized zones of elevated water saturation and low oxygen concentrations in unsaturated waste rock. At the mine dump scale, the extent of denitrification in the unsaturated waste rock was inferred from water samples collected from underlying rock drains. Copyright © 2018. Published by Elsevier B.V.

Carbon nanotubes affect the toxicity of CuO nanoparticles to denitrification in marine sediments by altering cellular internalization of nanoparticle

PubMed Central

Zheng, Xiong; Su, Yinglong; Chen, Yinguang; Wan, Rui; Li, Mu; Huang, Haining; Li, Xu

2016-01-01

Denitrification is an important pathway for nitrate transformation in marine sediments, and this process has been observed to be negatively affected by engineered nanomaterials. However, previous studies only focused on the potential effect of a certain type of nanomaterial on microbial denitrification. Here we show that the toxicity of CuO nanoparticles (NPs) to denitrification in marine sediments is highly affected by the presence of carbon nanotubes (CNTs). It was found that the removal efficiency of total NOX−-N (NO3−-N and NO2−-N) in the presence of CuO NPs was only 62.3%, but it increased to 81.1% when CNTs appeared in this circumstance. Our data revealed that CuO NPs were more easily attached to CNTs rather than cell surface because of the lower energy barrier (3.5 versus 36.2 kT). Further studies confirmed that the presence of CNTs caused the formation of large, incompact, non-uniform dispersed, and more negatively charged CuO-CNTs heteroaggregates, and thus reduced the nanoparticle internalization by cells, leading to less toxicity to metabolism of carbon source, generation of reduction equivalent, and activities of nitrate reductase and nitrite reductase. These results indicate that assessing nanomaterial-induced risks in real circumstances needs to consider the “mixed” effects of nanomaterials. PMID:27279546

The Nitrogen Cycle During the Transition to Euxinia

NASA Astrophysics Data System (ADS)

Meyer, K. M.; Kump, L. R.; Ridgwell, A.

2008-12-01

Nitrogen and phosphorous are essential to life, and their biological availability is hypothesized to regulate marine productivity on short and geologic timescales. The nature of primary production during recurrent intervals of Phanerozoic anoxia is of particular interest because of the redox control of nutrient and trace metal availability. Dissolved phosphate likely increased during transitions from oxic to euxinic marine conditions, while nitrogen availability may have decreased due to extensive denitrification as low-oxygen waters spread. Because nitrogen fixation is both metabolically and trace-metal intensive, a key question in the transition to euxinia is whether nitrogen fixation can "keep pace" with denitrification. If denitrification exceeds nitrogen fixation, diminished export production and oxygen demand in an N-limited ocean would pose a negative feedback that may prevent euxinia altogether or initiate the shift back to oxic conditions. Here we use the GENIE-1 Earth system model to address the biogeochemistry of the oxic-euxinic transition characteristic of some Phanerozoic oceanic anoxic events. As previously demonstrated with box models, phosphate accumulation stimulates both nitrogen fixation and denitrification. While there is an initial transient loss of total fixed nitrogen from the ocean, nitrogen inputs eventually exceed losses, and the marine nitrogen reservoir grows with that of phosphate to significantly exceed its modern value. Nitrogen buildup also corresponds with a shift in ecology of the surface ocean and the unexpected initiation of non-Redfieldian stoichiometry in the chemistry of the deep ocean.

The application of moving bed biofilm reactor to denitrification process after trickling filters.

PubMed

Kopec, Lukasz; Drewnowski, Jakub; Kopec, Adam

2016-12-01

The paper presents research of a prototype moving bed biofilm reactor (MBBR). The device was used for the post-denitrification process and was installed at the end of a technological system consisting of a septic tank and two trickling filters. The concentrations of suspended biomass and biomass attached on the EvU Perl moving bed surface were determined. The impact of the external organic carbon concentration on the denitrification rate and efficiency of total nitrogen removal was also examined. The study showed that the greater part of the biomass was in the suspended form and only 6% of the total biomass was attached to the surface of the moving bed. Abrasion forces between carriers of the moving bed caused the fast stripping of attached microorganisms and formation of flocs. Thanks to immobilization of a small amount of biomass, the MBBR was less prone to leaching of the biomass and the occurrence of scum and swelling sludge. It was revealed that the maximum rate of denitrification was an average of 0.73 gN-NO 3 /gDM·d (DM: dry matter), and was achieved when the reactor was maintained in external organic carbon concentration exceeding 300 mgO 2 /dm 3 chemical oxygen demand. The reactor proved to be an effective device enabling the increase of total nitrogen removal from 53.5% to 86.0%.

Perturbation-free measurement of in situ di-nitrogen emissions from denitrification in nitrate-rich aquatic ecosystems.

PubMed

Qin, Shuping; Clough, Timothy; Luo, Jiafa; Wrage-Mönnig, Nicole; Oenema, Oene; Zhang, Yuming; Hu, Chunsheng

2017-02-01

Increased production of reactive nitrogen (Nr) from atmospheric di-nitrogen (N 2 ) has greatly contributed to increased food production. However, enriching the biosphere with Nr has also caused a series of negative effects on global ecosystems, especially aquatic ecosystems. The main pathway converting Nr back into the atmospheric N 2 pool is the last step in the denitrification process. Despite several attempts, there is still a need for perturbation-free methods for measuring in situ N 2 fluxes from denitrification in aquatic ecosystems at the field scale. Such a method is needed to comprehensively quantify the N 2 fluxes from aquatic ecosystems. Here we observed linear relationships between the δ 15 N-N 2 O signatures and the logarithmically transformed N 2 O/(N 2 +N 2 O) emission ratios. Through independent measurements, we verified that the perturbation-free N 2 flux from denitrification in nitrate-rich aquatic ecosystems can be inferred from these linear relationships. Our method allowed the determination of field-scale in situ N 2 fluxes from nitrate-rich aquatic ecosystems both with and without overlaying water. The perturbation-free in situ N 2 fluxes observed by the new method were almost one order of magnitude higher than those by the sediment core method. The ability of aquatic ecosystems to remove Nr may previously have been severely underestimated. Copyright © 2016 Elsevier Ltd. All rights reserved.

Efficacy of Bioremediation of Agricultural Runoff Using Bacterial Communities in Woodchip Bioreactors.

NASA Astrophysics Data System (ADS)

Mortensen, Z. H.; Leandro, M.; Silveus, J. M.

2016-12-01

California's agricultural sector is fundamental in the State's economic growth and is responsible for supplying a large portion of the country's produce. In order to meet the market's demand for crop production the region's agrarian landscape requires an abundance of nutrient rich irrigation. The resultant agricultural effluent is a source of increased nutrient content in California's watershed and groundwater systems, promoting eutrophication and contributing to negative impacts on local ecosystems and human health. Previous studies have examined the denitrification potential of woodchip bioreactors. However, research has been deficient regarding specific variables that may affect the remediation process. To evaluate the efficacy of woodchip bioreactors in remediating waters containing high nitrate concentrations, denitrification rates were examined and parameters such as temperature, laminar flow, and hydraulic residence times were measured to identify potential methods for increasing denitrification efficiency. By measuring the rate of denitrification in a controlled environment where potentially confounding factors can be manipulated, physical components affecting the efficiency of woodchip bioreactors were examined to assess effects. Our research suggests the implementation of woodchip bioreactors to treat agricultural runoff would significantly reduce the concentration of nitrate in agricultural effluent and contribute to the mitigation of negative impacts associated with agricultural irrigation. Future research should focus on the ability of woodchip bioreactors to successfully remediate other agricultural pollutants, such as phosphates and pesticides, to optimize the efficiency of the bioremediation process.

An Analysis of Denitrification and Anammox Processes in Sediments Underneath Oyster Aquaculture

NASA Astrophysics Data System (ADS)

Mazur, C. I.; Edgcomb, V. P.; Rogers, D.; Cobban, A.

2016-02-01

Oysters play a very important role in the removal of nitrogen from eutrophic waters. While the amount of nitrogen that is converted into biomass is well studied, little is known about the additional amount of nitrogen that may be removed from the sediments due to the presence of oysters. The purpose of this project was to examine microbial processes that occur in sediments under oyster aquaculture cages in local ponds/estuaries, and to measure the rates of key processes associated with nitrogen removal. Little Pond and West Falmouth (Cape Cod, Massachusetts) are coastal waterways that are degraded due to nitrogen loading. Oyster aquaculture operations have been installed at both sites to help clean up those eutrophic estuaries. We measured nitrate and ammonia concentrations in porewaters and water columns. Direct measurements of rates of denitrification and anaerobic ammonium oxidation (anammox) were completed with Membrane Inlet Mass Spectroscopy (MIMS). Genes and transcripts associated with denitrification and anammox in sediments under oysters and at control sites were calculated using quantitative PCR. Results suggest that rates of denitrification are 2-30 times higher under oysters than at control sites, and gene expression patterns provide a second line of support for those findings. The ultimate goal of the project is to provide data to improve models of the nitrogen removal potential of shellfish aquaculture as a possible remediation strategy for improving the quality of eutrophic coastal waters.

Floodplain restoration enhances denitrification and reach-scale nitrogen removal in an agricultural stream.

PubMed

Roley, Sarah S; Tank, Jennifer L; Stephen, Mia L; Johnson, Laura T; Beaulieu, Jake J; Witter, Jonathan D

2012-01-01

Streams of the agricultural Midwest, USA, export large quantities of nitrogen, which impairs downstream water quality, most notably in the Gulf of Mexico. The two-stage ditch is a novel restoration practice, in which floodplains are constructed alongside channelized ditches. During high flows, water flows across the floodplains, increasing benthic surface area and stream water residence time, as well as the potential for nitrogen removal via denitrification. To determine two-stage ditch nitrogen removal efficacy, we measured denitrification rates in the channel and on the floodplains of a two-stage ditch in north-central Indiana for one year before and two years after restoration. We found that instream rates were similar before and after the restoration, and they were influenced by surface water NO3- concentration and sediment organic matter content. Denitrification rates were lower on the constructed floodplains and were predicted by soil exchangeable NO3- concentration. Using storm flow simulations, we found that two-stage ditch restoration contributed significantly to NO3- removal during storm events, but because of the high NO3- loads at our study site, < 10% of the NO3- load was removed under all storm flow scenarios. The highest percentage of NO3- removal occurred at the lowest loads; therefore, the two-stage ditch's effectiveness at reducing downstream N loading will be maximized when the practice is coupled with efforts to reduce N inputs from adjacent fields.

Effect of soil saturation on denitrification in a grassland soil

NASA Astrophysics Data System (ADS)

Maritza Cardenas, Laura; Bol, Roland; Lewicka-Szczebak, Dominika; Gregory, Andrew Stuart; Matthews, Graham Peter; Whalley, William Richard; Misselbrook, Thomas Henry; Scholefield, David; Well, Reinhard

2017-10-01

Nitrous oxide (N2O) is of major importance as a greenhouse gas and precursor of ozone (O3) destruction in the stratosphere mostly produced in soils. The soil-emitted N2O is generally predominantly derived from denitrification and, to a smaller extent, nitrification, both processes controlled by environmental factors and their interactions, and are influenced by agricultural management. Soil water content expressed as water-filled pore space (WFPS) is a major controlling factor of emissions and its interaction with compaction, has not been studied at the micropore scale. A laboratory incubation was carried out at different saturation levels for a grassland soil and emissions of N2O and N2 were measured as well as the isotopocules of N2O. We found that flux variability was larger in the less saturated soils probably due to nutrient distribution heterogeneity created from soil cracks and consequently nutrient hot spots. The results agreed with denitrification as the main source of fluxes at the highest saturations, but nitrification could have occurred at the lower saturation, even though moisture was still high (71 % WFSP). The isotopocules data indicated isotopic similarities in the wettest treatments vs. the two drier ones. The results agreed with previous findings where it is clear there are two N pools with different dynamics: added N producing intense denitrification vs. soil N resulting in less isotopic fractionation.

Simultaneous nitrification and denitrification in a novel membrane bioelectrochemical reactor with low membrane fouling tendency.

PubMed

Li, Hui; Zuo, Wei; Tian, Yu; Zhang, Jun; Di, Shijing; Li, Lipin; Su, Xinying

2017-02-01

Microbial fuel cells (MFCs) can use nitrate as a cathodic electron acceptor for electrochemical denitrification, yet there is little knowledge about how to apply them into current wastewater treatment process to achieve efficient nitrogen removal. In this study, two dual-chamber MFCs were integrated with an aerobic membrane bioreactor to construct a novel membrane bioelectrochemical reactor (MBER) for simultaneous nitrification and denitrification under specific aeration. The effects of chemical oxygen demand (COD) loading rate, COD/N ratio, hydraulic retention time (HRT), and external resistance on the system performance were investigated. High effluent quality was obtained in the MBER in terms of COD and ammonium. During the operation, denitrification simultaneously occurred with nitrification at the bio-cathode of the MBER, achieving a maximal nitrogen removal efficiency of 84.3 %. A maximum power density of 1.8 W/m 3 and a current density of 8.5 A/m 3 were achieved with a coulombic efficiency of 12.1 %. Furthermore, compared to the control system, the MBER exhibited lower membrane fouling tendency due to mixed liquor volatile suspended solids (MLVSSs) and extracellular polymeric substance (EPS) reductions, EPSp/EPSc ratio decrease, and particle size increase of the sludge. These results suggest that the MBER holds potential for efficient nitrogen removal, electricity production, and membrane fouling mitigation.

Impacts of adding FGDG on the abundance of nitrification and denitrification functional genes during dairy manure and sugarcane pressmud co-composting.

PubMed

Li, Qunliang; Guo, Xiaobo; Lu, Yanyu; Shan, Guangchun; Huang, Junhao

2016-10-01

To investigate the impacts of flue gas desulphurization gypsum (FGDG) amendment on the nitrification and denitrification during composting, dairy manure and sugarcane pressmud co-composting with FGDG (CPG) and without FGDG (CP) were conducted in this work. The physico-chemical parameters and the copies of nitrification and denitrification functional genes with real-time quantitative polymerase chain reaction (qPCR) during composting were analyzed. FGDG amendment displayed an inhibitory effect on the copies of 16S rDNA and delayed the occurrence of the highest gene copies of amoA during composting. The nxrA gene copies was inhibited by FGDG amendment during the mature phase. The addition of FGDG increased the relative content of narG and nirS during composting, contributing to more NO3(-)-N being reduced to NO2(-)-N. The amoA showed significant negative correlation with OM and NH4(+)-N, and positive correlation with NO3(-)-N. The nxrA displayed a negative correlation with temperature. These results demonstrated FGDG amendment significantly affected the copies of nitrification and denitrification functional genes, which changed the nitrogen flux of composting. Taken together, these data shed an insight into FGDG amendment affecting the nitrogen transformation during composting on a molecular level. Copyright © 2016 Elsevier Ltd. All rights reserved.

Biological groundwater denitrification systems: Lab-scale trials aimed at nitrous oxide production and emission assessment.

PubMed

Capodici, Marco; Avona, Alessia; Laudicina, Vito Armando; Viviani, Gaspare

2018-07-15

Bio-trenches are a sustainable option for treating nitrate contamination in groundwater. However, a possible side effect of this technology is the production of nitrous oxide, a greenhouse gas that can be found both dissolved in the liquid effluent as well as emitted as off gas. The aim of this study was to analyze NO 3 - removal and N 2 O production in lab-scale column trials. The column contained olive nut as organic carbon media. The experimental study was divided into three phases (I, II and III) each characterized by different inlet NO 3 - concentrations (30, 50, 75mgNO 3 -NL -1 respectively). Sampling ports deployed along the length of the column allowed to observe the denitrification process as well as the formation and consumption of intermediate products, such as nitrite (NO 2 - ) and nitrous oxide (N 2 O). In particular, it was observed that N 2 O production represent only a small fraction of removed NO 3 - during Phase I and II, both for dissolved (0.007%) and emitted (0.003%) phase, and it was recorded a high denitrification efficiency, over 99%. Nevertheless, significantly higher values were recorded for Phase 3 concerning emitted phase (0.018%). This fact is due to increased inlet concentration which resulted in a carbon limitation and in a consequent decrease in denitrification efficiency (76%). Copyright © 2018 Elsevier B.V. All rights reserved.

Denitrification potential evaluation of a newly indigenous aerobic denitrifier isolated from largemouth bass Micropterus salmoides culture pond

NASA Astrophysics Data System (ADS)

Wang, Cuicui; Zhang, Kai; Xie, Jun; Liu, Qigen; Yu, Deguang; Wang, Guangjun; Yu, Ermeng; Gong, Wangbao; Li, Zhifei

2017-10-01

This work evaluates the application potential of a new indigenous aerobic denitrifier, strain Pseudomonas CW-2, isolated from a largemouth bass culture pond. The rate of ammonium-N removal by strain CW-2 was approximately 97% at a DO concentration of 5.2 mg/L. Furthermore, when nitrate and ammonia coexisted, the strain gave priority to assimilating ammonia, and thereafter to denitrification. Under optimal cultivation conditions, citrate and acetate were the carbon resources, C/N was 8, dissolved oxygen was 5.2 mg/L, and pH was 7; the removal rate of ammonium reached nearly 90%. The changing patterns of different bacteria in strain CW-2-treated and the control pond water were also compared. Lower levels of ammonia, nitrite, and phosphates were observed in the treated water as compared with the controls. Meanwhile, phylum-level distributions of the bacterial OTUs revealed that Proteobacteria, Bacteroidetes, Planctomycetes, and Nitrospirae continuously changed their relative abundances in relation to carbon and the addition of strain CW-2; this finding implies that the conventional denitrification process was weakened under the effects of carbon or the presence of strain CW-2. We propose that strain CW-2 is a promising organism for the removal of ammonium in intensive fish culture systems, according to our evaluations of its denitrification performance.

Simultaneous Heterotrophic Nitrification and Aerobic Denitrification by Chryseobacterium sp. R31 Isolated from Abattoir Wastewater

PubMed Central

Kundu, Pradyut; Pramanik, Arnab; Dasgupta, Arpita; Mukherjee, Somnath; Mukherjee, Joydeep

2014-01-01

A heterotrophic carbon utilizing microbe (R31) capable of simultaneous nitrification and denitrification (SND) was isolated from wastewater of an Indian slaughterhouse. From an initial COD value of 583.0 mg/L, 95.54% was removed whilst, from a starting NH4 +-N concentration of 55.7 mg/L, 95.87% was removed after 48 h contact. The concentrations of the intermediates hydroxylamine, nitrite, and nitrate were low, thus ensuring nitrogen removal. Aerobic denitrification occurring during ammonium removal by R31 was confirmed by utilization of both nitrate and nitrite as nitrogen substrates. Glucose and succinate were superior while acetate and citrate were poor substrates for nitrogen removal. Molecular phylogenetic identification, supported by chemotaxonomic and physiological properties, assigned R31 as a close relative of Chryseobacterium haifense. The NH4 +-N utilization rate and growth of strain R31 were found to be higher at C/N = 10 in comparison to those achieved with C/N ratios of 5 and 20. Monod kinetic coefficients, half saturation concentration (K s), maximum rate of substrate utilization (k), yield coefficient, (Y) and endogenous decay coefficient (K d) indicated potential application of R31 in large-scale SND process. This is the first report on concomitant carbon oxidation, nitrification, and denitrification in the genus Chryseobacterium and the associated kinetic coefficients. PMID:24991552

Quantifying denitrification losses from a sub-tropical pasture in Queensland/Australia - use of the 15N gas flux method

NASA Astrophysics Data System (ADS)

Friedl, Johannes; Scheer, Clemens; Warner, Daniel; Grace, Peter

2014-05-01

The microbial mediated production of nitrous oxide (N2O) and its reduction to dinitrogen (N2) via denitrification represents a loss of nitrogen (N) from fertilised agro ecosystems to the atmosphere. Although denitrification remains a major uncertainty in estimating N losses from soils, the magnitude of N2 losses and related N2:N2O ratios from soils are largely unknown due to difficulties measuring N2 against a high atmospheric background. In order to address this lack of data, this study investigated the influence of different soil moisture contents on N2 and N2O emissions from a sub-tropical pasture in Queensland/Australia using the 15N gas flux method. Intact soil cores were incubated over 14 days at 80% and 100% water filled pore space (WFPS). Gas samples were taken up to six times per day after application of 15N labelled nitrate, equivalent to 50 kg N ha-1 and analysed for N2 and N2O by isotope ratio mass spectrometry. Fluxes were calculated assuming non-random 15N distribution in the headspace according to Mulvaney and Kurtz (1984) using the labelled pool of nitrate estimated from N2O measurements (Stevens and Laughlin 2001). The main product of denitrification in both treatments was N2. N2 emissions exceeded N2O emissions by a factor of 1.3 ± 0.3 at 80% WFPS and a factor of 3 ± 0.8 at 100% WFPS. The total amount of N-N2 lost over the incubation period was 13.5±1.0 kg N ha-1 at 80% WFPS and 21.8±1.8 kg ha-1 at 100% WFPS respectively. Over the entire incubation period, N2 emissions remained elevated at 100% WFPS, showing high variation between soil cores, while related N2O emissions decreased. At 80% WFPS, N2 emissions increased constantly over time showing significantly higher values after day five. At the same time, N2O fluxes declined. Consequently, N2:N2O ratios rose over the incubation period in both treatments. Overall denitrification rates and related N2:N2O ratios were higher at 100% WFPS compared to 80% WFPS, confirming WFPS as a major driver of denitrification. This study highlights denitrification as a major pathway of N loss for sub-tropical pasture systems with a substantial amount of applied fertiliser lost as N2 at high WFPS. The 15N gas flux method proved an effective tool in assessing N losses from fertilised soils. However, its suitability to determine N2 fluxes from soils with lower denitrification rates needs to be confirmed in future studies. The high variation between soil cores emphasises the need for field measurements with a high spatial and temporal resolution in order to capture the dynamics of N2 emissions. Mulvaney, R. L. and L. T. Kurtz. 1984. "Evolution of Dinitrogen and Nitrous Oxide from Nitrogen-15 Fertilized Soil Cores Subjected to Wetting and Drying Cycles1." Soil Sci. Soc. Am. J. 48 (3): 596-602. https://www.soils.org/publications/sssaj/abstracts/48/3/596. doi: 10.2136/sssaj1984.03615995004800030026x. Stevens, R. J. and R. J. Laughlin. 2001. "Lowering the detection limit for dinitrogen using the enrichment of nitrous oxide." Soil Biology and Biochemistry 33 (9): 1287-1289. http://www.sciencedirect.com/science/article/pii/S0038071701000360. doi: http://dx.doi.org/10.1016/S0038-0717(01)00036-0.

Estimating N2O processes during grassland renewal and grassland conversion to maize cropping using N2O isotopocules

NASA Astrophysics Data System (ADS)

Buchen, Caroline; Well, Reinhard; Flessa, Heinz; Fuß, Roland; Helfrich, Mirjam; Lewicka-Szczebak, Dominika

2017-04-01

Grassland break-up due to grassland renewal and grassland conversion to cropland can lead to a flush of mineral nitrogen from decomposition of the old grass sward and the decomposition of soil organic matter. Moreover, increased carbon and nitrogen mineralisation can result in enhanced nitrous oxide (N2O) emissions. As N2O is known to be an important greenhouse gas and a major precursor for ozone depletion, its emissions need to be mitigated by adjusting agricultural management practices. Therefore, it is necessary to understand the N2O processes involved, as well as the contribution of N2O reduction to N2. Apart from the widely used 15N gas flux method, natural abundance isotopic analysis of the four most abundant isotopocules of N2O species is a promising alternative to assess N2O production pathways. We used stable isotope analyses of soil-emitted N2O (δ18ON2O, δ15NN2Obulk and δ15NN2OSP= intramolecular distribution of 15N within the linear N2O molecule) with an isotopocule mapping approach to simultaneously estimate the magnitude of N2O reduction to N2 and the fraction of N2O originating from the bacterial denitrification pathway or fungal denitrification and/or nitrification. This approach is based on endmember areas of isotopic values for the N2O produced from different sources reported in the literature. For this purpose, we calculated two main scenarios with different assumptions for N2O produced: N2O is reduced to N2 before residual N2O is mixed with N2O of various sources (Scenario a) and vice versa (Scenario b). Based on this, we applied seven different scenario variations, where we evaluated the range of possible values for the potential N2O production pathways (heterotrophic bacterial denitrification and/or nitrifier denitrification and fungal denitrification and/or nitrification). This was done by using a range of isotopic endmember values and assuming different fractionation factors of N2O reduction in order to find the most reliable scenario. Investigations were carried out over a study period of one year following grassland renewal and grassland conversion to maize cropping on two different soil sites (Plaggic Anthrosol and Histic Gleysol) near Oldenburg, Lower Saxony Germany. Our observations indicate heterotrophic bacterial denitrification and/or nitrifier denitrification as the main source of N2O production, with a significant contribution of N2O reduction to N2 rather than nitrification (i.e. hydroxylamine oxidation) and fungal denitrification throughout the entire study period. A tendency to a higher contribution of N2O reduction to N2 was observed for the often water-saturated Histic Gleysol, while lower N2O reduction was found for the Plaggic Anthrosol. For two samples, we attempt to validate our results from the isotopocule mapping approach with a parallel 15N labelling study at the field scale (Buchen et al., 2016), as conditions of soil moisture, nitrate availability and N2O flux were similar. References: Buchen, C., Lewicka-Szczebak, D., Fuß, R., Helfrich, M., Flessa, H., Well, R., 2016. Fluxes of N2 and N2O and contributing processes in summer after grassland renewal and grassland conversion to maize cropping on a Plaggic Anthrosol and a Histic Gleysol. Soil Biology and Biochemistry 101, 6-19.

A novel 15N tracer approach for the quantification of N2 and N2O emissions from soil incubations in a completely automated laboratory set up

NASA Astrophysics Data System (ADS)

Scheer, Clemens; Dannenmann, Michael; Meier, Rudolf

2015-04-01

The microbial mediated production of nitrous oxide (N2O) and its reduction to dinitrogen (N2) via denitrification represents a loss of nitrogen (N) from fertilised agro-ecosystems to the atmosphere. Although denitrification has received great interest by biogeochemists in the last decades, the magnitude of N2lossesand related N2:N2O ratios from soils still are largely unknown due to methodical constraints. We present a novel 15N tracer approach, based on a previous developed tracer method to study denitrification in pure bacterial cultures which was modified for the use on soil incubations in a completely automated laboratory set up. The method uses a background air in the incubation vessels that is replaced with a helium-oxygen gas mixture with a 50-fold reduced N2 background (2 % v/v). This method allows for a direct and sensitive quantification of the N2 and N2O emissions from the soil with isotope-ratio mass spectrometry after 15N labelling of denitrification N substrates and minimises the sensitivity to the intrusion of atmospheric N2 at the same time. The incubation set up was used to determine the influence of different soil moisture levels on N2 and N2O emissions from a sub-tropical pasture soil in Queensland/Australia. The soil was labelled with an equivalent of 50 μg-N per gram dry soil by broadcast application of KNO3solution (4 at.% 15N) and incubated for 3 days at 80% and 100% water filled pore space (WFPS), respectively. The headspace of the incubation vessel was sampled automatically over 12hrs each day and 3 samples (0, 6, and 12 hrs after incubation start) of headspace gas analysed for N2 and N2O with an isotope-ratio mass spectrometer (DELTA V Plus, Thermo Fisher Scientific, Bremen, Germany(. In addition, the soil was analysed for 15N NO3- and NH4+ using the 15N diffusion method, which enabled us to obtain a complete N balance. The method proved to be highly sensitive for N2 and N2O emissions detecting N2O emissions ranging from 20 to 627 μN kg-1soil-1hr-1and N2 emissions ranging from 4.2 to 43 μN kg-1soil-1hr-1for the different treatments. The main end-product of denitrification was N2O for both water contents with N2 accounting for 9% and 13% of the total denitrification losses at 80% and 100%WFPS, respectively. Between 95-100% of the added 15N fertiliser could be recovered. Gross nitrification over the 3 days amounted to 8.6 μN g-1 soil-1 and 4.7 μN g-1 soil-1, denitrification to 4.1 μN g-1 soil-1 and 11.8 μN g-1 soil-1at 80% and 100%WFPS, respectively. The results confirm that the tested method allows for a direct and highly sensitive detection of N2 and N2O fluxes from soils and hence offers a sensitive tool to study denitrification and N turnover in terrestrial agro-ecosystems.

Groundwater denitrification in two agricultural river catchments: influence of hydro-geological setting and aquifer geochemistry

NASA Astrophysics Data System (ADS)

McAleer, Eoin; Mellander, Per-Erik; Coxon, Catherine; Richards, Karl G.; Jahangir, Mohammad M. R.

2015-04-01

Identifying subsurface environments with a natural capacity for denitrification is important for improving agricultural management. At the catchment scale, a complex hierarchy of landscape, hydro-geological and physico-chemical characteristics combine to affect the distribution of groundwater nitrate (NO3-). This study was conducted along four instrumented hillslopes in two ca. 10km2 agricultural river catchments in Ireland, one dominated by arable and one by grassland agriculture. Both catchments are characterised by well drained soils, but have differing aquifer characteristics. The arable catchment is underlain by weathered Ordovician slate bedrock which is extensively fractured with depth. The grassland catchment is characterised by Devonian sandstone bedrock, exhibiting both lateral (from upslope to near stream) and vertical variations in permeability along each hillslope. The capacity for groundwater denitrification was assessed by examining the concentration and distribution patterns of N species (total nitrogen, nitrate, nitrite, ammonium), dissolved organic carbon (DOC), dissolved oxygen (DO) and redox potential (Eh) in monthly samples from shallow and deep groundwater piezometers (n=37). Additionally, the gaseous products of denitrification: nitrous oxide (N2O) and excess dinitrogen (excess N2) were measured seasonally using gas chromatography and membrane inlet mass spectroscopy, respectively. The slate catchment was characterised by uniformity, both laterally and vertically, in aquifer geochemistry and gaseous denitrification products. The four year spatial mean groundwater NO3--N concentration was 6.89 mg/l and exhibited low spatial and temporal variability (temporal SD: 1.19 mg/l, spatial SD: 1.185 mg/l). Elevated DO concentrations (mean: 9.75 mg/l) and positive Eh (mean: +176.5mV) at all sample horizons indicated a setting with little denitrification potential. This non-reducing environment was reflected in a low accumulation of denitrification products (excess N2 mean: 1.57 mg/l, N2O mean: 1.61µg/l). Groundwater in the sandstone catchment had a comparable mean NO3--N concentration to that of the slate site (6.24mg/l) and while temporal variation was low (SD: 0.9 mg/l), spatial variation was substantially greater (SD: 3.63 mg/l). The accumulation of denitrification products in the sandstone catchment showed a large contrast to that of the slate with excess N2 ranging from 0.16-8.77 mg/l and N2O from 0.07-66.42 µg/l. Mean dissolved oxygen concentration and redox potential were 5.6mg/l and 67.5mV respectively. The near stream zones in particular were marked by favourable denitrifying conditions: hydraulic conductivity (<2m/day), Eh (<50mV) and DO (<5mg/l). Winter recharge had a diluting effect, increasing the concentration of DO and Eh with a concurrent decrease in excess N2 and N2O. The evolution of groundwater geochemistry along a subsurface flow path is a function of residence time. While both catchments are characterised as permeable, the slate catchment exhibits greater hydraulic conductivity values, particularly at depth, with groundwater geochemistry in all horizons reflective of recently recharged water. The deeper groundwater pathways and near stream zones in the sandstone catchment have a lower hydraulic conductivity. As such, dissolved oxygen and redox gradients occur with depth, causing the development of NO3- reducing zones.

Anaerobic nitrification-denitrification mediated by Mn-oxides in meso-tidal sediments: Implications for N2 and N2O production

NASA Astrophysics Data System (ADS)

Fernandes, Sheryl Oliveira; Javanaud, Cedric; Aigle, Axel; Michotey, Valérie D.; Guasco, Sophie; Deborde, Jonathan; Deflandre, Bruno; Anschutz, Pierre; Bonin, Patricia C.

2015-04-01

Field measurements in the Arcachon Bay (southwest France) indicated anaerobic production of NOx via nitrification, which was coupled to the reduction of Mn-oxides. To prove the occurrence of this process, laboratory microcosm experiments were set up. A 15N tracer-based approach was used to track if NOx produced through Mn-oxide-mediated anaerobic nitrification would be reduced to N2 via denitrification or anammox. We also hypothesized the generation of the potent greenhouse gas nitrous oxide (N2O) during nitrification-denitrification in the presence of Mn-oxides. The microcosms were prepared using sediment sectioned at varying depths (0-2.5, 2.5-4.5, 4.5-8.5, 8.5-12 and 12-17 cm) during two sampling campaigns in October (fall) and January (winter). Labeling with 15NO3- revealed low N2 production originating from NO3- in the water column (Pw), which did not increase significantly on amendment with Mn-oxides during both sampling periods. However, for both seasons, a significant increase of N2 produced via nitrification (Pn) was observed upon addition of Mn-oxides reaching 76-fold enhancement at ≤ 2.5 cm. To support these results, sediment slurries of October were subjected to amendment of 15NH4+, 14NO3- with or without addition of Mn-oxides. A substantial production of P15 (N2 production from 15NH4+) within 0-17 cm provided further evidence on nitrification-denitrification mediated by Mn-oxides probably with minimal intervention of anammox. In organically rich sediments, anaerobic nitrification-denitrification mediated by Mn-oxides could play an important role in lowering re-mineralized NH4+ levels in the benthic system. As hypothesized, significant production of N2O through the pathway was observed revealing newer mechanisms leading to the generation of the radiative gas.

Modeling nitrate-nitrogen removal process in first-flush reactor for stormwater treatment.

PubMed

Deng, Zhiqiang; Sun, Shaowei; Gang, Daniel Dianchen

2012-08-01

Stormwater runoff is one of the most common non-point sources of water pollution to rivers, lakes, estuaries, and coastal beaches. While most pollutants and nutrients, including nitrate-nitrogen, in stormwater are discharged into receiving waters during the first-flush period, no existing best management practices (BMPs) are specifically designed to capture and treat the first-flush portion of urban stormwater runoff. This paper presents a novel BMP device for highway and urban stormwater treatment with emphasis on numerical modeling of the new BMP, called first-flush reactor (FFR). A new model, called VART-DN model, for simulation of denitrification process in the designed first-flush reactor was developed using the variable residence time (VART) model. The VART-DN model is capable of simulating various processes and mechanisms responsible for denitrification in the FFR. Based on sensitivity analysis results of model parameters, the denitrification process is sensitive to the temperature correction factor (b), maximum nitrate-nitrogen decay rate (K (max)), actual varying residence time (T (v)), the constant decay rate of denitrifiying bacteria (v (dec)), temperature (T), biomass inhibition constant (K (b)), maximum growth rate of denitrifiying bacteria (v (max)), denitrifying bacteria concentration (X), longitudinal dispersion coefficient (K (s)), and half-saturation constant of dissolved carbon for biomass (K (Car-X)); a 10% increase in the model parameter values causes a change in model root mean square error (RMSE) of -28.02, -16.16, -12.35, 11.44, -9.68, 10.61, -16.30, -9.27, 6.58 and 3.89%, respectively. The VART-DN model was tested using the data from laboratory experiments conducted using highway stormwater and secondary wastewater. Model results for the denitrification process of highway stormwater showed a good agreement with observed data and the simulation error was less than 9.0%. The RMSE and the coefficient of determination for simulating denitrification process of wastewater were 0.5167 and 0.6912, respectively, demonstrating the efficacy of the VART-DN model.

A network model shows the importance of coupled processes in the microbial N cycle in the Cape Fear River Estuary

NASA Astrophysics Data System (ADS)

Hines, David E.; Lisa, Jessica A.; Song, Bongkeun; Tobias, Craig R.; Borrett, Stuart R.

2012-06-01

Estuaries serve important ecological and economic functions including habitat provision and the removal of nutrients. Eutrophication can overwhelm the nutrient removal capacity of estuaries and poses a widely recognized threat to the health and function of these ecosystems. Denitrification and anaerobic ammonium oxidation (anammox) are microbial processes responsible for the removal of fixed nitrogen and diminish the effects of eutrophication. Both of these microbial removal processes can be influenced by direct inputs of dissolved inorganic nitrogen substrates or supported by microbial interactions with other nitrogen transforming pathways such as nitrification and dissimilatory nitrate reduction to ammonium (DNRA). The coupling of nitrogen removal pathways to other transformation pathways facilitates the removal of some forms of inorganic nitrogen; however, differentiating between direct and coupled nitrogen removal is difficult. Network modeling provides a tool to examine interactions among microbial nitrogen cycling processes and to determine the within-system history of nitrogen involved in denitrification and anammox. To examine the coupling of nitrogen cycling processes, we built a nitrogen budget mass balance network model in two adjacent 1 cm3 sections of bottom water and sediment in the oligohaline portion of the Cape Fear River Estuary, NC, USA. Pathway, flow, and environ ecological network analyses were conducted to characterize the organization of nitrogen flow in the estuary and to estimate the coupling of nitrification to denitrification and of nitrification and DNRA to anammox. Centrality analysis indicated NH4+ is the most important form of nitrogen involved in removal processes. The model analysis further suggested that direct denitrification and coupled nitrification-denitrification had similar contributions to nitrogen removal while direct anammox was dominant to coupled forms of anammox. Finally, results also indicated that partial nitrification-anammox may play an important role in anammox nitrogen removal in the Cape Fear River Estuary.

Isotopic signals of denitrification in a northern hardwood forested catchment

NASA Astrophysics Data System (ADS)

Wexler, Sarah; Goodale, Christine

2013-04-01

Water samples from streams, groundwater and precipitation were collected during summer from the hydrologic reference watershed (W3) at Hubbard Brook Experimental Forest in the White Mountains, New Hampshire, and analysed for d15N-NO3 and d18O-NO3. Despite very low nitrate concentrations (<0.5 to 8.8 uM NO3-) dual-isotopic signals of sources and processes were clearly distinguishable. The isotopic composition of nitrate from shallow groundwater showed evidence of dual isotopic fractionation in line with denitrification, with a positive relationship between nitrogen and oxygen isotopic composition, a regression line slope of 0.76 (r2 = 0.68), and an empirical isotope enrichment factor of ɛP-S 15N-NO3 -12.7%. The isotopic composition of riparian groundwater nitrate from time-series samples showed variation in processes over a small spatial scale. The expected isotopic composition of nitrate sources in the watershed was used to distinguish nitrate in rain and nitrate from nitrification of both rainfall ammonium and ammonium from mineralised soil organic nitrogen. Evidence of oxygen exchange with water during nitrification was seen in the isotopic composition of stream and shallow groundwater nitrate. The isotopic composition of streamwater nitrate following a period of storms indicated that 25% of nitrate in the streamwater was of atmospheric origin. This suggests rapid infiltration of rainfall via vertical bypass flow to the saturated zone, enabling transport of atmospheric nitrate to the stream channels. Across the Hubbard Brook basin, the isotopic composition of nitrate from paired samples from watersheds 4-7 indicated a switch between a nitrification and assimilation dominated system, to a system influenced by rainfall nitrogen inputs and denitrification. The dual isotope approach has revealed evidence of denitrification of nitrate from different sources at low concentrations at Hubbard Brook during summer. This isotopic evidence deepens our understanding of the significance and spatial variability of denitrification in environments with low levels of nitrate, represented by this northern hardwood forested catchment.

Simulations of the Vertical Redistribution of HNO3 by NAT or NAD PSCs: The Sensitivity to the Number of Cloud Particles Formed and the Cloud Lifetime

NASA Technical Reports Server (NTRS)

Jensen, Eric J.; Tabazadeh, Azadeh; Drdla, Katja; Toon, Owen B.; Gore, Warren J. (Technical Monitor)

2000-01-01

Recent satellite and in situ measurements have indicated that limited denitrification can occur in the Arctic stratosphere. In situ measurements from the SOLVE campaign indicate polar stratospheric clouds (PSCs) composed of small numbers (about 3 x 10^ -4 cm^-3) of 10-20 micron particles (probably NAT or NAD). These observations raise the issue of whether low number density NAT PSCs can substantially denitrify the air with reasonable cloud lifetimes. In this study, we use a one dimensional cloud model to investigate the verticle redistribution of HNO3 by NAT/NAD PSCs. The cloud formation is driven by a temperature oscillation which drops the temperature below the NAT/NAD formation threshold (about 195 K) for a few days. We assume that a small fraction of the available aerosols act as NAT nuclei when the saturation ratio of HNO3 over NAT(NAD) exceeds 10(l.5). The result is a cloud between about 16 and 20 km in the model, with NAT/NAD particle effective radii as large as about 10 microns (in agreement with the SOLVE data). We find that for typical cloud lifetimes of 2-3 days or less, the net depletion of HNO3 is no more than 1-2 ppbv, regardless of the NAT or NAD particle number density. Repeated passes of the air column through the cold pool build up the denitrification to 3-4 ppbv, and the cloud altitude steadily decreases due to the downward transport of nitric acid. Increasing the cloud lifetime results in considerably more effective denitrification, even with very low cloud particle number densities. As expected, the degree of denitrification by NAT clouds is much larger than that by NAD Clouds. Significant denitrification by NAD Clouds is only possible if the cloud lifetime is several days or more. The clouds also cause a local maximum HNO3 mixing ratio at cloud base where the cloud particles sublimate.

Spatial and temporal variation of denitrification in the riparian zone during the hydrological year

NASA Astrophysics Data System (ADS)

Trauth, Nico; Musolff, Andreas; Knöller, Kay; Fleckenstein, Jan H.

2017-04-01

In the riparian zone, where stream water mixes with groundwater, biogeochemical reactions and solute transformations occur which may enhance the self-cleaning mechanisms of aquatic ecosystems. The water exchange and solute transport through the riparian zone is controlled by hydraulic gradients between stream and groundwater and thus varies seasonally and during stream discharge events. In this study, we focus on transport, mixing and the distribution of nitrate in the riparian zone of a gravelly alluvial aquifer with the aim to quantify its denitrification potential during the hydrological year. For this purpose, 25 groundwater wells were drilled along a 2 km stream section of the Selke river, a third-order stream in Germany. From the stream and the wells, water samples were taken 4-weekly over a period of 2 years. Water samples were analyzed to field parameters, major ions, dissolved organic carbon, and N-O isotopes. Results show a strong influence of the stream on the adjacent groundwater, which varies both in time and space. In general, we can distinguish between two endmembers: a) the stream water with low chloride (<30 mg/L) and nitrate (<10 mg/L) concentrations and b) the groundwater in 100m distance to the stream with high chloride (>70 mg/L) and nitrate (>50 mg/L) concentrations. Based on conservatively transported chloride, the mixing of the endmembers can be determined in the riparian zone. Deviations in nitrate concentrations from this mixing model may indicate nitrate degradation by e.g. denitrification. By combining this chloride-nitrate-ratio method with dissolved oxygen data and the isotopic signature of the nitrate molecule, we are able to determine the timing and the location of high denitrification patterns in the riparian aquifer. Highest variability of denitrification occurs over the year in terms of seasonality (temperature-driven) and is temporally fueled by additional organic carbon supply during discharge events.

Diversity and Activity of Denitrifiers of Chilean Arid Soil Ecosystems

PubMed Central

Orlando, Julieta; Carú, Margarita; Pommerenke, Bianca; Braker, Gesche

2012-01-01

The Chilean sclerophyllous matorral is a Mediterranean semiarid ecosystem affected by erosion, with low soil fertility, and limited by nitrogen. However, limitation of resources is even more severe for desert soils such as from the Atacama Desert, one of the most extreme arid deserts on Earth. Topsoil organic matter, nitrogen and moisture content were significantly higher in the semiarid soil compared to the desert soil. Although the most significant loss of biologically preferred nitrogen from terrestrial ecosystems occurs via denitrification, virtually nothing is known on the activity and composition of denitrifier communities thriving in arid soils. In this study we explored denitrifier communities from two soils with profoundly distinct edaphic factors. While denitrification activity in the desert soil was below detection limit, the semiarid soil sustained denitrification activity. To elucidate the genetic potential of the soils to sustain denitrification processes we performed community analysis of denitrifiers based on nitrite reductase (nirK and nirS) genes as functional marker genes for this physiological group. Presence of nirK-type denitrifiers in both soils was demonstrated but failure to amplify nirS from the desert soil suggests very low abundance of nirS-type denitrifiers shedding light on the lack of denitrification activity. Phylogenetic analysis showed a very low diversity of nirK with only three distinct genotypes in the desert soil which conditions presumably exert a high selection pressure. While nirK diversity was also limited to only few, albeit distinct genotypes, the semiarid matorral soil showed a surprisingly broad genetic variability of the nirS gene. The Chilean matorral is a shrub land plant community which form vegetational patches stabilizing the soil and increasing its nitrogen and carbon content. These islands of fertility may sustain the development and activity of the overall microbial community and of denitrifiers in particular. PMID:22493591

Field-scale application of spent sulfidic caustic as a source of alternative electron donor for autotrophic denitrification.

PubMed

Lee, Jae-Ho; Park, Jeung-Jin; Choi, Gi-Choong; Byun, Im-Gyu; Park, Tae-Joo; Lee, Tae-Ho

2013-01-01

Biological reuse of spent sulfidic caustic (SSC) originating from oil refineries is a promising method for the petrochemical industry because of low handling cost. SSC typically contains high concentrations of sulfur, with the most dominant sulfur compounds being sulfide (S(2-)). SSC is also characterized by a high pH and elevated alkalinity up to 5-15% by weight. Because of these characteristics, SSC can be used for denitrification of NO3(-)-N in the biological nitrogen removal process as both the electron donor and buffering agent in sulfur-utilizing autotrophic denitrification. In this study, two kinds of SSC (SSC I, SSC II) produced from two petrochemical companies were used for autotrophic denitrification in a field-scale wastewater treatment plant (WWTP). The effluent total nitrogen (TN) concentration in this process was about 10.5 mg/L without any external carbon sources and the nitrification efficiency was low, about 93.0%, because of alkalinity deficiency in the influent. The injection of SSC I, but not SSC II, promoted nitrification efficiency, which was attributed to the difference in the NaOH/S ratio between SSC I and II. SSC was injected based on sulfide concentration of SSC required to denitrify NO3(-)-N in the WWTP. SSC I had higher NaOH/S than SSC II and thus could supply more alkalinity for nitrification than SSC II. On the other hand, additional TN removal of about 9.0% was achieved with the injection of both SSCs. However, denitrification efficiency was not proportionally increased with increasing SSC injection because of NO3(-)-N deficiency in the anoxic tank due to the limited capacity of the recycling pump. For the same reason, sulfate concentration, which is the end product of sulfur-utilizing autotrophic denitrificaiton in the effluent, was also not increased with increasing SSC injection.

Denitrification and Biodiversity of Denitrifiers in a High-Mountain Mediterranean Lake

PubMed Central

Castellano-Hinojosa, Antonio; Correa-Galeote, David; Carrillo, Presentación; Bedmar, Eulogio J.; Medina-Sánchez, Juan M.

2017-01-01

Wet deposition of reactive nitrogen (Nr) species is considered a main factor contributing to N inputs, of which nitrate (NO3−) is usually the major component in high-mountain lakes. The microbial group of denitrifiers are largely responsible for reduction of nitrate to molecular dinitrogen (N2) in terrestrial and aquatic ecosystems, but the role of denitrification in removal of contaminant nitrates in high-mountain lakes is not well understood. We have used the oligotrophic, high-altitude La Caldera lake in the Sierra Nevada range (Spain) as a model to study the role of denitrification in nitrate removal. Dissolved inorganic Nr concentration in the water column of la Caldera, mainly nitrate, decreased over the ice-free season which was not associated with growth of microbial plankton or variations in the ultraviolet radiation. Denitrification activity, estimated as nitrous oxide (N2O) production, was measured in the water column and in sediments of the lake, and had maximal values in the month of August. Relative abundance of denitrifying bacteria in sediments was studied by quantitative polymerase chain reaction of the 16S rRNA and the two phylogenetically distinct clades nosZI and nosZII genes encoding nitrous oxide reductases. Diversity of denitrifiers in sediments was assessed using a culture-dependent approach and after the construction of clone libraries employing the nosZI gene as a molecular marker. In addition to genera Polymorphum, Paracoccus, Azospirillum, Pseudomonas, Hyphomicrobium, Thauera, and Methylophaga, which were present in the clone libraries, Arthrobacter, Burkholderia, and Rhizobium were also detected in culture media that were not found in the clone libraries. Analysis of biological activities involved in the C, N, P, and S cycles from sediments revealed that nitrate was not a limiting nutrient in the lake, allowed N2O production and determined denitrifiers’ community structure. All these results indicate that denitrification could be a major biochemical process responsible for the N losses that occur in La Caldera lake. PMID:29056928

Nitrogen speciation and trends, and prediction of denitrification extent, in shallow US groundwater

USGS Publications Warehouse

Hinkle, Stephen R.; Tesoriero, Anthony J.

2014-01-01

Uncertainties surrounding nitrogen cycling complicate assessments of the environmental effects of nitrogen use and our understanding of the global carbon–nitrogen cycle. In this paper, we synthesize data from 877 ambient-monitoring wells across the US to frame broad patterns of nitrogen speciation and trends. At these sites, groundwater frequently contains substantial co-occurring NO3− and XSN2 (N2 from denitrification), reflecting active/ongoing denitrification and/or a mixture of undenitrified and denitrified groundwater. NO3− and NH4+ essentially do not co-occur, indicating that the dominant source of NH4+ at these sites likely is not dissimilatory reduction of NO3− to NH4+. Positive correlations of NH4+ with apparent age, CH4, dissolved organic carbon, and indicators of reduced conditions are consistent with NH4+ mobilization from degradation of aquifer organic matter and contraindicate an anthropogenic source of NH4+ for most sites. Glacial aquifers and eastern sand and gravel aquifers generally have lower proportions of NO3− and greater proportions of XSN2 than do fractured rock and karst aquifers and western sand and gravel aquifers. NO3− dominates in the youngest groundwater, but XSN2 increases as residence time increases. Temporal patterns of nitrogen speciation and concentration reflect (1) changing NO3− loads over time, (2) groundwater residence-time controls on NH4+ mobilization from solid phases, and (3) groundwater residence-time controls on denitrification. A simple classification tree using readily available variables (a national coverage of soil water depth, generalized geology) or variables reasonably estimated in many aquifers (residence time) identifies categorical denitrification extent (<10%, 10–50%, and >50%) with 79% accuracy in an independent testing set, demonstrating a predictive application based on the interconnected effects of redox, geology, and residence time.

The dark side of the hyporheic zone: Depth profiles of nitrogen and its processing in stream sediments

USGS Publications Warehouse

Stelzer, R.S.; Bartsch, L.A.; Richardson, W.B.; Strauss, E.A.

2011-01-01

1.Although it is well known that sediments can be hot spots for nitrogen transformation in streams, many previous studies have confined measurements of denitrification and nitrate retention to shallow sediments (<5cm deep). We determined the extent of nitrate processing in deeper sediments of a sand plains stream (Emmons Creek) by measuring denitrification in core sections to a depth of 25cm and by assessing vertical nitrate profiles, with peepers and piezometers, to a depth of 70cm. 2.Denitrification rates of sediment slurries based on acetylene block were higher in shallower core sections. However, core sections deeper than 5cm accounted for 68% of the mean depth-integrated denitrification rate. 3.Vertical hydraulic gradient and vertical profiles of pore water chloride concentration suggested that deep ground water upwelled through shallow sediments before discharging to the stream channel. The results of a two-source mixing model based on chloride concentrations suggested that the hyporheic zone was very shallow (<5cm) in Emmons Creek. 4.Vertical profiles showed that nitrate concentration in shallow ground water was about 10-60% of the nitrate concentration of deep ground water. The mean nitrate concentrations of deep and shallow ground water were 2.17 and 0.73mgNO3-NL-1, respectively. 5.Deep ground water tended to be oxic (6.9mgO2L-1) but approached anoxia (0.8mgO2L-1) after passing through shallow, organic carbon-rich sediments, which suggests that the decline in the nitrate concentrations of upwelling ground water was because of denitrification. 6.Collectively, our results suggest that there is substantial nitrate removal occurring in deep sediments, below the hyporheic zone, in Emmons Creek. Our findings suggest that not accounting for nitrate removal in deep sediments could lead to underestimates of nitrogen processing in streams and catchments. ?? 2011 Blackwell Publishing Ltd.

Denitrification and Biodiversity of Denitrifiers in a High-Mountain Mediterranean Lake.

PubMed

Castellano-Hinojosa, Antonio; Correa-Galeote, David; Carrillo, Presentación; Bedmar, Eulogio J; Medina-Sánchez, Juan M

2017-01-01

Wet deposition of reactive nitrogen (Nr) species is considered a main factor contributing to N inputs, of which nitrate ([Formula: see text]) is usually the major component in high-mountain lakes. The microbial group of denitrifiers are largely responsible for reduction of nitrate to molecular dinitrogen (N 2 ) in terrestrial and aquatic ecosystems, but the role of denitrification in removal of contaminant nitrates in high-mountain lakes is not well understood. We have used the oligotrophic, high-altitude La Caldera lake in the Sierra Nevada range (Spain) as a model to study the role of denitrification in nitrate removal. Dissolved inorganic Nr concentration in the water column of la Caldera, mainly nitrate, decreased over the ice-free season which was not associated with growth of microbial plankton or variations in the ultraviolet radiation. Denitrification activity, estimated as nitrous oxide (N 2 O) production, was measured in the water column and in sediments of the lake, and had maximal values in the month of August. Relative abundance of denitrifying bacteria in sediments was studied by quantitative polymerase chain reaction of the 16S rRNA and the two phylogenetically distinct clades nosZ I and nosZ II genes encoding nitrous oxide reductases. Diversity of denitrifiers in sediments was assessed using a culture-dependent approach and after the construction of clone libraries employing the nosZ I gene as a molecular marker. In addition to genera Polymorphum , Paracoccus , Azospirillum , Pseudomonas , Hyphomicrobium , Thauera , and Methylophaga , which were present in the clone libraries, Arthrobacter , Burkholderia , and Rhizobium were also detected in culture media that were not found in the clone libraries. Analysis of biological activities involved in the C, N, P, and S cycles from sediments revealed that nitrate was not a limiting nutrient in the lake, allowed N 2 O production and determined denitrifiers' community structure. All these results indicate that denitrification could be a major biochemical process responsible for the N losses that occur in La Caldera lake.

Nitrous oxide emission from denitrification in stream and river networks

PubMed Central

Beaulieu, Jake J.; Tank, Jennifer L.; Hamilton, Stephen K.; Wollheim, Wilfred M.; Hall, Robert O.; Mulholland, Patrick J.; Peterson, Bruce J.; Ashkenas, Linda R.; Cooper, Lee W.; Dahm, Clifford N.; Dodds, Walter K.; Grimm, Nancy B.; Johnson, Sherri L.; McDowell, William H.; Poole, Geoffrey C.; Valett, H. Maurice; Arango, Clay P.; Bernot, Melody J.; Burgin, Amy J.; Crenshaw, Chelsea L.; Helton, Ashley M.; Johnson, Laura T.; O'Brien, Jonathan M.; Potter, Jody D.; Sheibley, Richard W.; Sobota, Daniel J.; Thomas, Suzanne M.

2011-01-01

Nitrous oxide (N2O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N2O via microbial denitrification that converts N to N2O and dinitrogen (N2). The fraction of denitrified N that escapes as N2O rather than N2 (i.e., the N2O yield) is an important determinant of how much N2O is produced by river networks, but little is known about the N2O yield in flowing waters. Here, we present the results of whole-stream 15N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N2O at rates that increase with stream water nitrate (NO3−) concentrations, but that <1% of denitrified N is converted to N2O. Unlike some previous studies, we found no relationship between the N2O yield and stream water NO3−. We suggest that increased stream NO3− loading stimulates denitrification and concomitant N2O production, but does not increase the N2O yield. In our study, most streams were sources of N2O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y−1 of anthropogenic N inputs to N2O in river networks, equivalent to 10% of the global anthropogenic N2O emission rate. This estimate of stream and river N2O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change. PMID:21173258

Advances on simultaneous desulfurization and denitrification using activated carbon irradiated by microwaves.

PubMed

Ma, Shuang-Chen; Gao, Li; Ma, Jing-Xiang; Jin, Xin; Yao, Juan-Juan; Zhao, Yi

2012-06-01

This paper describes the research background and chemistry of desulfurization and denitrification technology using microwave irradiation. Microwave-induced catalysis combined with activated carbon adsorption and reduction can reduce nitric oxide to nitrogen and sulfur dioxide to sulfur from flue gas effectively. This paper also highlights the main drawbacks of this technology and discusses future development trends. It is reported that the removal of sulfur dioxide and nitric oxide using microwave irradiation has broad prospects for development in the field of air pollution control.

In situ stimulation of groundwater denitrification with formate to remediate nitrate contamination

USGS Publications Warehouse

Smith, R.L.; Miller, D.N.; Brooks, M.H.; Widdowson, M.A.; Killingstad, M.W.

2001-01-01

In situ stimulation of denitrification has been proposed as a mechanism to remediate groundwater nitrate contamination. In this study, sodium formate was added to a sand and gravel aquifer on Cape Cod, MA, to test whether formate could serve as a potential electron donor for subsurface denitrification. During 16- and 10-day trials, groundwater from an anoxic nitrate-containing zone (0.5-1.5 mM) was continuously withdrawn, amended with formate and bromide, and pumped back into the aquifer. Concentrations of groundwater constituents were monitored in multilevel samplers after up to 15 m of transport by natural gradient flow. Nitrate and formate concentrations were decreased 80-100% and 60-70%, respectively, with time and subsequent travel distance, while nitrite concentrations inversely increased. The field experiment breakthrough curves were simulated with a two-dimensional site-specific model that included transport, denitrification, and microbial growth. Initial values for model parameters were obtained from laboratory incubations with aquifer core material and then refined to fit field breakthrough curves. The model and the lab results indicated that formate-enhanced nitrite reduction was nearly 4-fold slower than nitrate reduction, but in the lab, nitrite was completely consumed with sufficient exposure time. Results of this study suggest that a long-term injection of formate is necessary to test the remediation potential of this approach for nitrate contamination and that adaptation to nitrite accumulation will be a key determinative factor.In situ stimulation of denitrification has been proposed as a mechanism to remediate groundwater nitrate contamination. In this study, sodium formate was added to a sand and gravel aquifer on Cape Cod, MA, to test whether formate could serve as a potential electron donor for subsurface denitrification. During 16- and 10-day trials, groundwater from an anoxic nitrate-containing zone (0.5-1.5 mM) was continuously withdrawn, amended with formate and bromide, and pumped back into the aquifer. Concentrations of groundwater constituents were monitored in multilevel samplers after up to 15 m of transport by natural gradient flow. Nitrate and formate concentrations were decreased 80-100% and 60-70%, respectively, with time and subsequent travel distance, while nitrite concentrations inversely increased. The field experiment breakthrough curves were simulated with a two-dimensional site-specific model that included transport, denitrification, and microbial growth. Initial values for model parameters were obtained from laboratory incubations with aquifer core material and then refined to fit field breakthrough curves. The model and the lab results indicated that formate-enhanced nitrite reduction was nearly 4-fold slower than nitrate reduction, but in the lab, nitrite was completely consumed with sufficient exposure time. Results of this study suggest that a long-term injection of formate is necessary to test the remediation potential of this approach for nitrate contamination and that adaptation to nitrite accumulation will be a key determinative factor.

Enhancement of simultaneous algicidal and denitrification of immobilized Acinetobacter sp. J25 with magnetic Fe3O4 nanoparticles.

PubMed

Su, Jun Feng; Liang, Dong Hui; Huang, Ting Lin; Wei, Li; Ma, Min; Lu, Jinsuo

2017-07-01

In this study, immobilization technique was employed to improve simultaneous algicidal and denitrification of immobilized Acinetobacter sp. J25 with magnetic Fe 3 O 4 in eutrophic landscape water. After 7 days of operation, the maximum superoxide dismutase (SOD) activity (54.43 U mg -1 ), nitrate removal efficiency (100% (0.2127 mg L -1  h -1 )), and chlorophyll-a removal efficiency (89.71%) were obtained from the immobilized J25 with magnetic Fe 3 O 4 . The results suggest that immobilized J25 with magnetic Fe 3 O 4 had better nitrogen removal efficiency and algicidal activity in eutrophic landscape water. High-throughput sequencing data profiled the strain J25 that was immobilized with magnetic Fe 3 O 4 which changed the composition of the microbial community. The results indicated a novel concept of enhancing the algicidal and denitrification property of immobilized bacteria with magnetic Fe 3 O 4 in eutrophic landscape water.

Nitrogen Removal Characteristics of Pseudomonas putida Y-9 Capable of Heterotrophic Nitrification and Aerobic Denitrification at Low Temperature

PubMed Central

He, Tengxia; Ye, Qing; Chen, Yanli; Xie, Enyu; Zhang, Xue

2017-01-01

The cold-adapted bacterium Pseudomonas putida Y-9 was investigated and exhibited excellent capability for nitrogen removal at 15°C. The strain capable of heterotrophic nitrification and aerobic denitrification could efficiently remove ammonium, nitrate, and nitrite at an average removal rate of 2.85 mg, 1.60 mg, and 1.83 mg NL−1 h−1, respectively. Strain Y-9 performed nitrification in preference to denitrification when ammonium and nitrate or ammonium and nitrite coexisted in the solution. Meantime, the presence of nitrate had no effect on the ammonium removal rate of strain Y-9, and yet the presence of high concentration of nitrite would inhibit the cell growth and decrease the nitrification rate. The experimental results indicate that P. putida Y-9 has potential application for the treatment of wastewater containing high concentrations of ammonium along with its oxidation products at low temperature. PMID:28293626

Heterotrophic nitrification and aerobic denitrification by Pseudomonas tolaasii Y-11 without nitrite accumulation during nitrogen conversion.

PubMed

He, Tengxia; Li, Zhenlun; Sun, Quan; Xu, Yi; Ye, Qing

2016-01-01

A hypothermia aerobic nitrite-denitrifying bacterium, Pseudomonas tolaasii strain Y-11, was found to display high removal capabilities for heterotrophic nitrification with ammonium and for aerobic denitrification with nitrate or nitrite nitrogen. When strain Y-11 was cultivated for 4days at 15°C with the initial ammonium, nitrate and nitrite nitrogen concentrations of 209.62, 204.61 and 204.33mg/L (pH 7.2), the ammonium, nitrate and nitrite removal efficiencies were 93.6%, 93.5% and 81.9% without nitrite accumulation, and the corresponding removal rates reached as high as 2.04, 1.99 and 1.74mg/L/h, respectively. Additionally, ammonium was removed mainly during the simultaneous nitrification and denitrification process. All results demonstrate that P. tolaasii strain Y-11 has the particularity to remove ammonium, nitrate and nitrite nitrogen at low temperatures, which guarantees it for future application in winter wastewater treatment. Copyright © 2015 Elsevier Ltd. All rights reserved.

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 T with an incomplete denitrification pathway

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, En -Min; Murugapiran, Senthil K.; Mefferd, Chrisabelle C.

Thermus amyloliquefaciens type strain YIM 77409 T is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409 T together with its genome sequence and annotation. The genome is 2,160,855 bp long and consists of 6 scaffolds with 67.4 % average GC content. A total of 2,313 genes were predicted, comprising 2,257 protein-coding and 56 RNA genes. The genome is predicted to encode a complete glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle. Additionally, a large number of transportersmore » and enzymes for heterotrophy highlight the broad heterotrophic lifestyle of this organism. Furthermore, a denitrification gene cluster included genes predicted to encode enzymes for the sequential reduction of nitrate to nitrous oxide, consistent with the incomplete denitrification phenotype of this strain.« less

[Simultaneous desulfurization and denitrification by TiO2/ACF under different irradiation].

PubMed

Han, Jing; Zhao, Yi

2009-04-15

The supported TiO2 photocatalysts were prepared in laboratory, and the experiments of simultaneous desulfurization and denitrification were carried out by self-designed photocatalysis reactor. The optimal experimental conditions were achieved, and the efficiencies of simultaneous desulfurization and denitrification under two different light sources were compared. The results show that the oxygen content of flue gas, reaction temperature, flue gas humidity and irradiation intensity are most essential factors to photocatalysis. For TiO2/ACF, the removal efficiencies of 99.7% for SO2 and 64.3% for NO are obtained respectively at optimal experimental conditions under UV irradiation. For TiO2/ACF, the removal efficiencies of 97.5% for SO2 and 49.6% for NO are achieved respectively at optimal experimental conditions under the visible light irradiation. The results of five times parallel experiments indicate standard deviation S of parallel data is little. The mechanism of removal for SO2 and NO is proposed under two light sources by ion chromatography analysis of the absorption liquid.

Microbial community structure and dynamics in a mixotrophic nitrogen removal process using recycled spent caustic under different loading conditions.

PubMed

Park, Sora; Yu, Jaecheul; Byun, Imgyu; Cho, Sunja; Park, Taejoo; Lee, Taeho

2011-08-01

A laboratory-scale Bardenpho process was established to investigate the proper nitrogen loading rate (NLR) when modified spent caustic (MSC) is applied as electron donor and alkalinity source for denitrification. MSC injection induced autotrophic nitrogen removal with sulfur as electron donor and heterotrophic denitrification. The nitrogen removal rate (NRR) did not increase proportionally to NLR. Based on the total nitrogen concentration in the effluent observed in the trials with MSC, the NLR in the influent should not exceed 0.15 kg N/m(3)d in order to satisfy water quality regulations. Microbial communities in the anoxic reactors were characterized by pyrosequencing of 16S rRNA gene sequences amplified by the polymerase chain reaction of DNA extracted from sludge samples. Microbial diversity was lower as MSC dosage was increased, and the injection of MSC caused an increase in SOB belonging to the genus Thiobacillus which is responsible for denitrification using sulfur. Copyright © 2011 Elsevier Ltd. All rights reserved.

Nitrogen-limited mangrove ecosystems conserve N through dissimilatory nitrate reduction to ammonium

PubMed Central

Fernandes, Sheryl Oliveira; Bonin, Patricia C.; Michotey, Valérie D.; Garcia, Nicole; LokaBharathi, P. A.

2012-01-01

Earlier observations in mangrove sediments of Goa, India have shown denitrification to be a major pathway for N loss1. However, percentage of total nitrate transformed through complete denitrification accounted for <0–72% of the pore water nitrate reduced. Here, we show that up to 99% of nitrate removal in mangrove sediments is routed through dissimilatory nitrate reduction to ammonium (DNRA). The DNRA process was 2x higher at the relatively pristine site Tuvem compared to the anthropogenically-influenced Divar mangrove ecosystem. In systems receiving low extraneous nutrient inputs, this mechanism effectively conserves and re-circulates N minimizing nutrient loss that would otherwise occur through denitrification. In a global context, the occurrence of DNRA in mangroves has important implications for maintaining N levels and sustaining ecosystem productivity. For the first time, this study also highlights the significance of DNRA in buffering the climate by modulating the production of the greenhouse gas nitrous oxide. PMID:22639727

Enhanced biological nutrient removal in sequencing batch reactors operated as static/oxic/anoxic (SOA) process.

PubMed

Xu, Dechao; Chen, Hongbo; Li, Xiaoming; Yang, Qi; Zeng, Tianjing; Luo, Kun; Zeng, Guangming

2013-09-01

An innovative static/oxic/anoxic (SOA) activated sludge process characterized by static phase as a substitute for conventional anaerobic stage was developed to enhance biological nutrient removal (BNR) with influent ammonia of 20 and 40 mg/L in R1 and R2 reactors, respectively. The results demonstrated that static phase could function as conventional anaerobic stage. In R1 lower influent ammonia concentration facilitated more polyphosphate accumulating organisms (PAOs) growth, but secondary phosphorus release occurred due to NOx(-) depletion during post-anoxic period. In R2, however, denitrifying phosphorus removal proceeded with sufficient NOx(-). Both R1 and R2 saw simultaneous nitrification-denitrification. Glycogen was utilized to drive post-denitrification with denitrification rates in excess of typical endogenous decay rates. The anoxic stirring duration could be shortened from 3 to 1.5h to avoid secondary phosphorus release in R1 and little adverse impact was found on nutrients removal in R2. Copyright © 2013 Elsevier Ltd. All rights reserved.

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 T with an incomplete denitrification pathway

DOE PAGES

Zhou, En -Min; Murugapiran, Senthil K.; Mefferd, Chrisabelle C.; ...

2016-02-27

Thermus amyloliquefaciens type strain YIM 77409 T is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409 T together with its genome sequence and annotation. The genome is 2,160,855 bp long and consists of 6 scaffolds with 67.4 % average GC content. A total of 2,313 genes were predicted, comprising 2,257 protein-coding and 56 RNA genes. The genome is predicted to encode a complete glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle. Additionally, a large number of transportersmore » and enzymes for heterotrophy highlight the broad heterotrophic lifestyle of this organism. Furthermore, a denitrification gene cluster included genes predicted to encode enzymes for the sequential reduction of nitrate to nitrous oxide, consistent with the incomplete denitrification phenotype of this strain.« less

Simultaneous nitrification-denitrification achieved by an innovative internal-loop airlift MBR: comparative study.

PubMed

Li, Y Z; He, Y L; Ohandja, D G; Ji, J; Li, J F; Zhou, T

2008-09-01

This study assessed the performance of different single-stage continuous aerated submerged membrane bioreactors (MBR) for nitrogen removal. Almost complete nitrification was achieved in each MBR irrespective of operating mode and biomass system. Denitrification was found to be the rate-limiting step for total nitrogen (T-N) removal. The MBR with internal-loop airlift reactor (ALR) configuration performed better as regards T-N removal compared with continuous stirred-tank reactor (CSTR). It was demonstrated that simultaneous nitrification and denitrification (SND) is the mechanism leading to nitrogen removal and the contribution of microenvironment on SND is more remarkable for the MBRs with hybrid biomass. Macroenvironment analyses showed that gradient distribution of dissolved oxygen (DO) level in airlift MBRs imposed a significant effect on SND. Higher mixed liquor suspended solid (MLSS) concentration led to the improvement in T-N removal by enhancing anoxic microenvironment. Apparent nitrite accumulation coupled with higher nitrogen reduction was accomplished at MLSS concentration exceeded 12.6 g/L.

Effect of temperature and benzalkonium chloride on nitrate reduction.

PubMed

Hajaya, Malek G; Tezel, Ulas; Pavlostathis, Spyros G

2011-04-01

The effect of temperature and benzalkonium chloride (BAC) on nitrate reduction was investigated in batch assays using a mixed nitrate reducing culture. Nitrate was transformed completely, mainly through denitrification, to dinitrogen at 5, 10, 15 and 22 °C. In the absence of BAC, reduction of individual nitrogen oxides had different susceptibility to temperature and transient nitrite accumulation was observed at low temperatures. When the effect of BAC was tested up to 100 mg/L from 5 to 22 °C, denitrification was inhibited at and above 50mg BAC/L with transient nitrite accumulation at all temperatures. The effect of BAC was described by a competitive inhibition model. Nitrite reduction was the denitrification step most susceptible to BAC, especially at low temperatures. BAC was not degraded during the batch incubation and was mostly biomass-adsorbed. Overall, this study shows that low temperatures exacerbate the BAC inhibitory effect, which in turn is controlled by adsorption to biomass. Copyright © 2011 Elsevier Ltd. All rights reserved.

Tracking composition of microbial communities for simultaneous nitrification and denitrification in polyurethane foam.

PubMed

Chen, Yuan; Wang, Li; Ma, Fang; Yang, Ji-xian; Qiu, Shan

2014-01-01

The process of simultaneous nitrification and denitrification (SND) of immobilized microorganisms in polyurethane form is discussed. The effect of different positions within the polyurethane carrier on microbial community response for the SND process is investigated by a combination of denaturing gradient gel electrophoresis profiles of the 16S rRNA gene V3 region and scanning electron microscopy. Results show that polyurethane, which consists of a unique porous structure, is an ideal platform for biofilm stratification of aerobe, anaerobe and facultative microorganisms in regard to the SND process. The community structure diversity response to different positions was distinct. The distributions of various functional microbes, detected from the surface aerobic stratification to the interior anaerobic stratification of polyurethane, were mainly nitrifying and denitrifying bacteria. Meanwhile aerobic denitrifying bacteria such as Paracoccus sp., Agrobacterium rubi and Ochrobactrum sp. were also adhered to the interior and surface of polyurethane. The SND process occurring on polyurethane foam was carried out by two independent processes: nitrogen removal and aerobic denitrification.

Integrated nitrogen removal biofilter system with ceramic membrane for advanced post-treatment of municipal wastewater.

PubMed

Son, Dong-Jin; Yun, Chan-Young; Kim, Woo-Yeol; Zhang, Xing-Ya; Kim, Dae-Gun; Chang, Duk; Sunwoo, Young; Hong, Ki-Ho

2016-12-01

The pre-denitrification biofilm process for nitrogen removal was combined with ceramic membrane with pore sizes of 0.05-0.1 µm as a system for advanced post-treatment of municipal wastewater. The system was operated under an empty bed hydraulic retention time of 7.8 h, recirculation ratio of 3, and transmembrane pressure of 0.47 bar. The system showed average removals of organics, total nitrogen, and solids as high as 93%, 80%, and 100%, respectively. Rapid nitrification could be achieved and denitrification was performed in the anoxic filter without external carbon supplements. The residual particulate organics and nitrogen in effluent from biofilm process could be also removed successfully through membrane filtration and the removal of total coliform was noticeably improved after membrane filtration. Thus, a system composed of the pre-denitrification biofilm process with ceramic membrane would be a compact and flexible option for advanced post-treatment of municipal wastewater.

Denitrification is the Primary Source of Soil-Derived Nitrous Oxide in a Terrestrial Ecosystem: Evidence From Isotopologues

NASA Astrophysics Data System (ADS)

Opdyke, M.; Ostrom, P. H.; Ostrom, N. E.

2007-12-01

Isotopologues were applied to address the origins of N2O released from soils at the W.K. Kellogg Biological Station, a temperate agricultural field station in SW Michigan. Soils sampled included: unfertilized, tilled fields in soybean (AGsoy); tilled fields in corn receiving fertilizer (AGcorn), and an early-successional (SUCC) field abandoned in1989. Soil-derived N2O fluxes and isotopologues were measured in May, July, Sept. and Nov. in 2006. Fluxes were greatest in AGcorn, with a maximum average in May of 46.9 g N2O-N ha-1 d-1. The δ15N and δ15O values for N2O ranged between -16.1 and 9.7 ‰, and 22.2 and 57.3 ‰, respectively. Site Preference (SP), the difference between the δ15N of the central and outer N atoms in N2O, values weighted by flux were 3.0, 10.6 and 14.9 ‰ at AGcorn, SUCC and AGsoy, respectively. Based on SP values of 0 ‰ for denitrification and 33 ‰ for nitrification [Sutka et al., 2006], between 55 and 91 % of soil-derived N2O was from denitrification in all three fields. We further find that N2O reduction alters SP to a small extent and results in an overestimate of the importance of nitrification. Thus, our overall finding that 85% of the N2O flux is from denitrification is an underestimate.

Denitrification activity is closely linked to the total ambient Fe concentration in mangrove sediments of Goa, India

NASA Astrophysics Data System (ADS)

Fernandes, Sheryl Oliveira; Gonsalves, Maria-Judith; Michotey, Valérie D.; Bonin, Patricia C.; Loka, A.; Bharathi, P.

2013-10-01

Denitrification activity (DNT) and associated environmental parameters were examined in two mangrove ecosystems of Goa, India - the relatively unimpacted Tuvem and the anthropogenically-influenced Divar. Sampling was carried out at every 2 cm interval within the 0-10 cm depth range to determine (1) seasonal (pre-monsoon, monsoon and post-monsoon) down-core variation in DNT (2) assess the environmental factors influencing the DNT and (3) to build predictive models for benthic DNT. Denitrification generally decreased with depth and showed marked seasonal variation at both the locations. Denitrification peaked during the pre-monsoon occurring at a rate of up to 21.00 ± 12.84 nmol N2O g-1 h-1 within 0-4 cm at both the locations. Further, DNT at pre-monsoon was significantly influenced by Fe content at Tuvem and Divar suggesting Fe-mediated nitrate respiration. The influence of other limiting substrates such as NO3- and NO2- was most important during the monsoon and post-monsoon especially at Divar. The multiple regression models developed could predict 67-98% of the observed variability in DNT through the seasons. About 6-9 environmental variables were required to relatively well-predict DNT in these sediments with the complexity governing DNT decreasing from pre-monsoon to post-monsoon. Our results reveal that seasonal dynamics of DNT in tropical mangrove sediments are closely linked to the total Fe at the prevailing ambient concentration in both the systems.

A modified biotrickling filter for nitrification-denitrification in the treatment of an ammonia-contaminated air stream.

PubMed

Raboni, Massimo; Torretta, Vincenzo

2016-12-01

A conventional biotrickling filter for airborne ammonia nitrification has been modified, by converting the liquid sump into a biological denitrifying reactor. The biotrickling filter achieves an average ammonia removal efficiency of 92.4 %, with an empty bed retention time (EBRT) equal to 36 s and an average ammonia concentration of 54.7 mg Nm -3 in the raw air stream. The denitrification reactor converts ammonia into inert gas N 2 , in addition to other important advantages connected to the alkaline character of the biochemical pathway of the denitrifying bacteria. Firstly, the trickling water crossing the denitrification reactor underwent a notable pH increase from 7.3 to 8.0 which prevented the acidic inhibition of the nitrifying bacteria due to the buildup of nitric and nitrous acids. Secondly, the pH increase created the ideal conditions for the autotrophic nitrifying bacteria. The tests proved that an ammonia removal efficiency of above 90 % can be achieved with an EBRT greater than 30 s and a volumetric load lower than 200 g NH 3  m -3  day -1 . The results of the biofilm observation by using a scanning confocal laser microscope are reported together with the identification of degrading bacteria genera in the biotrickling filter. The efficiency of the plant and its excellent operational stability highlight the effectiveness of the synergistic action between the denitrification reactor and the biotrickling filter in removing airborne ammonia.

Ion exchange membrane textile bioreactor as a new alternative for drinking water denitrification.

PubMed

Berdous, Dalila; Akretche, Djamal-Eddine; Abderahmani, Ahmed; Berdous, Sakina; Meknaci, Rima

2014-06-01

This work enters in the optics of the denitrification of a polluted water by two membrane techniques, the Donnan dialysis (DD) and the ion exchange membrane bioreactor (IEMB), using a conventional barrier, composed by an anion exchange membrane (AEM), and a hybrid barrier, where the AEM is combined to an anion exchange textile (AET). The effects of the hydrodynamic factor and the nature of the carbon source on the transfer and the reduction of nitrate ions were studied. The study results obtained through the DD showed the effectiveness of the hybrid barrier in the recovery and concentration of nitrate ions. This was also recorded during denitrification by the hybrid process, called the ion exchange membrane textile bioreactor (IEMTB), with a significant reduction of nitrates, compared to IEMB, due to the efficiency of the Pseudomonas aeruginosa biofilm formed at the surface of the AET. Here, the permselectivity of the membrane and the good bioreduction of the pollutants are no longer major conditions to the better performance of the process. The application of IEMTB in the denitrification of groundwater, having a nitrate concentration of 96.67 ppm, shows a total reduction of nitrate ions without changing the quality of the water. Indeed, the analysis of the recovered water, or yet the treated water, shows the absence of the bacterium by-products and concentrations in the nitrates and nitrites which are, respectively, equal to 0.02±0.01 ppm, and inferiors to the detection limit (<0.02 ppm).

Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses

PubMed Central

Vaccaro, Brian J.; Thorgersen, Michael P.; Lancaster, W. Andrew; Price, Morgan N.; Wetmore, Kelly M.; Poole, Farris L.; Deutschbauer, Adam; Arkin, Adam P.

2015-01-01

Enzymes of the denitrification pathway play an important role in the global nitrogen cycle, including release of nitrous oxide, an ozone-depleting greenhouse gas. In addition, nitric oxide reductase, maturation factors, and proteins associated with nitric oxide detoxification are used by pathogens to combat nitric oxide release by host immune systems. While the core reductases that catalyze the conversion of nitrate to dinitrogen are well understood at a mechanistic level, there are many peripheral proteins required for denitrification whose basic function is unclear. A bar-coded transposon DNA library from Pseudomonas stutzeri strain RCH2 was grown under denitrifying conditions, using nitrate or nitrite as an electron acceptor, and also under molybdenum limitation conditions, with nitrate as the electron acceptor. Analysis of sequencing results from these growths yielded gene fitness data for 3,307 of the 4,265 protein-encoding genes present in strain RCH2. The insights presented here contribute to our understanding of how peripheral proteins contribute to a fully functioning denitrification pathway. We propose a new low-affinity molybdate transporter, OatABC, and show that differential regulation is observed for two MoaA homologs involved in molybdenum cofactor biosynthesis. We also propose that NnrS may function as a membrane-bound NO sensor. The dominant HemN paralog involved in heme biosynthesis is identified, and a CheR homolog is proposed to function in nitrate chemotaxis. In addition, new insights are provided into nitrite reductase redundancy, nitric oxide reductase maturation, nitrous oxide reductase maturation, and regulation. PMID:26452555