Petrophysical analysis of geophysical logs of the National Drilling Company-U.S. Geological Survey ground-water research project for Abu Dhabi Emirate, United Arab Emirates

USGS Publications Warehouse

Jorgensen, Donald G.; Petricola, Mario

1994-01-01

A program of borehole-geophysical logging was implemented to supply geologic and geohydrologic information for a regional ground-water investigation of Abu Dhabi Emirate. Analysis of geophysical logs was essential to provide information on geohydrologic properties because drill cuttings were not always adequate to define lithologic boundaries. The standard suite of logs obtained at most project test holes consisted of caliper, spontaneous potential, gamma ray, dual induction, microresistivity, compensated neutron, compensated density, and compensated sonic. Ophiolitic detritus from the nearby Oman Mountains has unusual petrophysical properties that complicated the interpretation of geophysical logs. The density of coarse ophiolitic detritus is typically greater than 3.0 grams per cubic centimeter, porosity values are large, often exceeding 45 percent, and the clay fraction included unusual clays, such as lizardite. Neither the spontaneous-potential log nor the natural gamma-ray log were useable clay indicators. Because intrinsic permeability is a function of clay content, additional research in determining clay content was critical. A research program of geophysical logging was conducted to determine the petrophysical properties of the shallow subsurface formations. The logging included spectral-gamma and thermal-decay-time logs. These logs, along with the standard geophysical logs, were correlated to mineralogy and whole-rock chemistry as determined from sidewall cores. Thus, interpretation of lithology and fluids was accomplished. Permeability and specific yield were calculated from geophysical-log data and correlated to results from an aquifer test. On the basis of results from the research logging, a method of lithologic and water-resistivity interpretation was developed for the test holes at which the standard suite of logs were obtained. In addition, a computer program was developed to assist in the analysis of log data. Geohydrologic properties were estimated, including volume of clay matrix, volume of matrix other than clay, density of matrix other than clay, density of matrix, intrinsic permeability, specific yield, and specific storage. Geophysical logs were used to (1) determine lithology, (2) correlate lithologic and permeable zones, (3) calibrate seismic reprocessing, (4) calibrate transient-electromagnetic surveys, and (5) calibrate uphole-survey interpretations. Logs were used at the drill site to (1) determine permeability zones, (2) determine dissolved-solids content, which is a function of water resistivity, and (3) design wells accordingly. Data and properties derived from logs were used to determine transmissivity and specific yield of aquifer materials.

Eliminating the rugosity effect from compensated density logs by geometrical response matching

DOE Office of Scientific and Technical Information (OSTI.GOV)

Flaum, C.; Holenka, J.M.; Case, C.R.

1991-06-01

A theoretical and experimental effort to understand the effects of borehole rugosity on individual detector responses yielded an improved method of processing compensated density logs. Historically, the spine/ribs technique for obtaining borehole and mudcake compensation of dual-detector, gamma-gamma density logs has been very successful as long as the borehole and other environmental effects vary slowly with depth and the interest in limited to vertical features broader than several feet. With the increased interest in higher vertical resolution, a more detailed analysis of the effect of such quickly varying environmental effects as rugosity was required. A laboratory setup simulating the effectmore » of rugosity on Schlumberger Litho-Density{sup SM} tools (LDT) was used to study vertical response in the presence of rugosity. The data served as the benchmark for the Nonte Carlo models used to generate synthetic density logs in the presence of more complex rugosity patterns. The results provided in this paper show that proper matching of the two detector responses before application of conventional compensation methods can eliminate rugosity effects without degrading the measurements vertical resolution. The accuracy of the results is a good as the obtained in a parallel mudcake or standoff with the conventional method. Application to both field and synthetic log confirmed the validity of these results.« less

Escherichia coli bacteria density in relation to turbidity, streamflow characteristics, and season in the Chattahoochee River near Atlanta, Georgia, October 2000 through September 2008—Description, statistical analysis, and predictive modeling

USGS Publications Warehouse

Lawrence, Stephen J.

2012-01-01

Regression analyses show that E. coli density in samples was strongly related to turbidity, streamflow characteristics, and season at both sites. The regression equation chosen for the Norcross data showed that 78 percent of the variability in E. coli density (in log base 10 units) was explained by the variability in turbidity values (in log base 10 units), streamflow event (dry-weather flow or stormflow), season (cool or warm), and an interaction term that is the cross product of streamflow event and turbidity. The regression equation chosen for the Atlanta data showed that 76 percent of the variability in E. coli density (in log base 10 units) was explained by the variability in turbidity values (in log base 10 units), water temperature, streamflow event, and an interaction term that is the cross product of streamflow event and turbidity. Residual analysis and model confirmation using new data indicated the regression equations selected at both sites predicted E. coli density within the 90 percent prediction intervals of the equations and could be used to predict E. coli density in real time at both sites.

Electrofacies analysis for coal lithotype profiling based on high-resolution wireline log data

NASA Astrophysics Data System (ADS)

Roslin, A.; Esterle, J. S.

2016-06-01

The traditional approach to coal lithotype analysis is based on a visual characterisation of coal in core, mine or outcrop exposures. As not all wells are fully cored, the petroleum and coal mining industries increasingly use geophysical wireline logs for lithology interpretation.This study demonstrates a method for interpreting coal lithotypes from geophysical wireline logs, and in particular discriminating between bright or banded, and dull coal at similar densities to a decimetre level. The study explores the optimum combination of geophysical log suites for training the coal electrofacies interpretation, using neural network conception, and then propagating the results to wells with fewer wireline data. This approach is objective and has a recordable reproducibility and rule set.In addition to conventional gamma ray and density logs, laterolog resistivity, microresistivity and PEF data were used in the study. Array resistivity data from a compact micro imager (CMI tool) were processed into a single microresistivity curve and integrated with the conventional resistivity data in the cluster analysis. Microresistivity data were tested in the analysis to test the hypothesis that the improved vertical resolution of microresistivity curve can enhance the accuracy of the clustering analysis. The addition of PEF log allowed discrimination between low density bright to banded coal electrofacies and low density inertinite-rich dull electrofacies.The results of clustering analysis were validated statistically and the results of the electrofacies results were compared to manually derived coal lithotype logs.

Estimating tree bole and log weights from green densities measured with the Bergstrom Xylodensimeter.

Treesearch

Dale R. Waddell; Michael B. Lambert; W.Y. Pong

1984-01-01

The performance of the Bergstrom xylodensimeter, designed to measure the green density of wood, was investigated and compared with a technique that derived green densities from wood disk samples. In addition, log and bole weights of old-growth Douglas-fir and western hemlock were calculated by various formulas and compared with lifted weights measured with a load cell...

Headwater streams and forest management: does ecoregional context influence logging effects on benthic communities?

USGS Publications Warehouse

Medhurst, R. Bruce; Wipfli, Mark S.; Binckley, Chris; Polivka, Karl; Hessburg, Paul F.; Salter, R. Brion

2010-01-01

Effects of forest management on stream communities have been widely documented, but the role that climate plays in the disturbance outcomes is not understood. In order to determine whether the effect of disturbance from forest management on headwater stream communities varies by climate, we evaluated benthic macroinvertebrate communities in 24 headwater streams that differed in forest management (logged-roaded vs. unlogged-unroaded, hereafter logged and unlogged) within two ecological sub-regions (wet versus dry) within the eastern Cascade Range, Washington, USA. In both ecoregions, total macroinvertebrate density was highest at logged sites (P = 0.001) with gathering-collectors and shredders dominating. Total taxonomic richness and diversity did not differ between ecoregions or forest management types. Shredder densities were positively correlated with total deciduous and Sitka alder (Alnus sinuata) riparian cover. Further, differences in shredder density between logged and unlogged sites were greater in the wet ecoregion (logging × ecoregion interaction; P = 0.006) suggesting that differences in post-logging forest succession between ecoregions were responsible for differences in shredder abundance. Headwater stream benthic community structure was influenced by logging and regional differences in climate. Future development of ecoregional classification models at the subbasin scale, and use of functional metrics in addition to structural metrics, may allow for more accurate assessments of anthropogenic disturbances in mountainous regions where mosaics of localized differences in climate are common.

Investigating uplift in the South-Western Barents Sea using sonic and density well log measurements

NASA Astrophysics Data System (ADS)

Yang, Y.; Ellis, M.

2014-12-01

Sediments in the Barents Sea have undergone large amounts of uplift due to Plio-Pleistoncene deglaciation as well as Palaeocene-Eocene Atlantic rifting. Uplift affects the reservoir quality, seal capacity and fluid migration. Therefore, it is important to gain reliable uplift estimates in order to evaluate the petroleum prospectivity properly. To this end, a number of quantification methods have been proposed, such as Apatite Fission Track Analysis (AFTA), and integration of seismic surveys with well log data. AFTA usually provides accurate uplift estimates, but the data is limited due to its high cost. While the seismic survey can provide good uplift estimate when well data is available for calibration, the uncertainty can be large in areas where there is little to no well data. We estimated South-Western Barents Sea uplift based on well data from the Norwegian Petroleum Directorate. Primary assumptions include time-irreversible shale compaction trends and a universal normal compaction trend for a specified formation. Sonic and density logs from two Cenozoic shale formation intervals, Kolmule and Kolje, were used for the study. For each formation, we studied logs of all released wells, and established exponential normal compaction trends based on a single well. That well was then deemed the reference well, and relative uplift can be calculated at other well locations based on the offset from the normal compaction trend. We found that the amount of uplift increases along the SW to NE direction, with a maximum difference of 1,447 m from the Kolje FM estimate, and 699 m from the Kolmule FM estimate. The average standard deviation of the estimated uplift is 130 m for the Kolje FM, and 160 m for the Kolmule FM using the density log. While results from density logs and sonic logs have good agreement in general, the density log provides slightly better results in terms of higher consistency and lower standard deviation. Our results agree with published papers qualitatively with some differences in the actual amount of uplifts. The results are considered to be more accurate due to the higher resolution of the log scale data that was used.

Petrophysical evaluation of subterranean formations

DOEpatents

Klein, James D; Schoderbek, David A; Mailloux, Jason M

2013-05-28

Methods and systems are provided for evaluating petrophysical properties of subterranean formations and comprehensively evaluating hydrate presence through a combination of computer-implemented log modeling and analysis. Certain embodiments include the steps of running a number of logging tools in a wellbore to obtain a variety of wellbore data and logs, and evaluating and modeling the log data to ascertain various petrophysical properties. Examples of suitable logging techniques that may be used in combination with the present invention include, but are not limited to, sonic logs, electrical resistivity logs, gamma ray logs, neutron porosity logs, density logs, NRM logs, or any combination or subset thereof.

Endogenous Sex Steroid Hormones, Lipid Subfractions, and Ectopic Adiposity in Asian Indians.

PubMed

Kim, Catherine; Kong, Shengchun; Krauss, Ronald M; Stanczyk, Frank Z; Reddy, Srinivasa T; Needham, Belinda L; Kanaya, Alka M

2015-12-01

Estradiol, testosterone (T), and sex hormone binding globulin (SHBG) levels are associated with lipid subfractions in men and women. Our objective was to determine if associations are independent from adipose tissue area among Asian Indians. We used data from 42 women and 57 Asian Indian men who did not use exogenous steroids or lipid-lowering medications. Lipoprotein subfractions including low-density lipoprotein cholesterol (LDL), very low-density lipoprotein cholesterol (VLDL), and intermediate density lipoprotein (IDL) were assessed by ion mobility spectrometry. Intra-abdominal adiposity was assessed by computed tomography. Multivariable regression models estimated the association between sex hormones with lipoprotein subfractions before and after adjustment for adiposity. Among women, lower logSHBG levels were associated with smaller logLDL particle size and higher logtriglycerides, logVLDL, and logIDL, although these associations were attenuated with adjustment for visceral adiposity in particular. Among women, lower logSHBG levels was significantly associated with lower logmedium LDL and logsmall LDL concentrations even after consideration of visceral and hepatic adiposity and insulin resistance as represented by the homeostasis model assessment of insulin resistance (HOMA-IR). Among men, lower logSHBG was also associated with smaller logLDL peak diameter size and higher logtriglycerides and logVLDL, even after adjustment for HOMA-IR and adiposity. Relationships between sex steroids and lipid subfractions were not significant among women. Among men, higher total testosterone was associated with higher logHDL and logLDL particle size, and lower logtriglycerides and logVLDL, but these associations were partially attenuated with adjustment for adiposity and HOMA-IR. Among Asian Indians, SHBG is associated with more favorable lipid subfraction concentrations, independent of hepatic and visceral fat.

Functional response of ungulate browsers in disturbed eastern hemlock forests

USGS Publications Warehouse

DeStefano, Stephen

2015-01-01

Ungulate browsing in predator depleted North American landscapes is believed to be causing widespread tree recruitment failures. However, canopy disturbances and variations in ungulate densities are sources of heterogeneity that can buffer ecosystems against herbivory. Relatively little is known about the functional response (the rate of consumption in relation to food availability) of ungulates in eastern temperate forests, and therefore how “top down” control of vegetation may vary with disturbance type, intensity, and timing. This knowledge gap is relevant in the Northeastern United States today with the recent arrival of hemlock woolly adelgid (HWA; Adelges tsugae) that is killing eastern hemlocks (Tsuga canadensis) and initiating salvage logging as a management response. We used an existing experiment in central New England begun in 2005, which simulated severe adelgid infestation and intensive logging of intact hemlock forest, to examine the functional response of combined moose (Alces americanus) and white-tailed deer (Odocoileus virginianus) foraging in two different time periods after disturbance (3 and 7 years). We predicted that browsing impacts would be linear or accelerating (Type I or Type III response) in year 3 when regenerating stem densities were relatively low and decelerating (Type II response) in year 7 when stem densities increased. We sampled and compared woody regeneration and browsing among logged and simulated insect attack treatments and two intact controls (hemlock and hardwood forest) in 2008 and again in 2012. We then used AIC model selection to compare the three major functional response models (Types I, II, and III) of ungulate browsing in relation to forage density. We also examined relative use of the different stand types by comparing pellet group density and remote camera images. In 2008, total and proportional browse consumption increased with stem density, and peaked in logged plots, revealing a Type I response. In 2012, stem densities were greatest in girdled plots, but proportional browse consumption was highest at intermediate stem densities in logged plots, exhibiting a Type III (rather than a Type II) functional response. Our results revealed shifting top–down control by herbivores at different stages of stand recovery after disturbance and in different understory conditions resulting from logging vs. simulated adelgid attack. If forest managers wish to promote tree regeneration in hemlock stands that is more resistant to ungulate browsers, leaving HWA-infested stands unmanaged may be a better option than preemptively logging them.

A regional view of urban sedimentary basins in Northern California based on oil industry compressional-wave velocity and density logs

USGS Publications Warehouse

Brocher, T.M.

2005-01-01

Compressional-wave (sonic) and density logs from 119 oil test wells provide knowledge of the physical properties and impedance contrasts within urban sedimentary basins in northern California, which is needed to better understand basin amplification. These wire-line logs provide estimates of sonic velocities and densities for primarily Upper Cretaceous to Pliocene clastic rocks between 0.1 - and 5.6-km depth to an average depth of 1.8 km. Regional differences in the sonic velocities and densities in these basins largely 1reflect variations in the lithology, depth of burial, porosity, and grain size of the strata, but not necessarily formation age. For example, Miocene basin filling strata west of the Calaveras Fault exhibit higher sonic velocities and densities than older but finer-grained and/or higher-porosity rocks of the Upper Cretaceous Great Valley Sequence. As another example, hard Eocene sandstones west of the San Andreas Fault have much higher impedances than Eocene strata, mainly higher-porosity sandstones and shales, located to the east of this fault, and approach those expected for Franciscan Complex basement rocks. Basement penetrations define large impedence contrasts at the sediment/basement contact along the margins of several basins, where Quaternary, Pliocene, and even Miocene deposits directly overlie Franciscan or Salinian basement rocks at depths as much as 1.7 km. In contrast, in the deepest, geographic centers of the basins, such logs exhibit only a modest impedance contrast at the sediment/basement contact at depths exceeding 2 km. Prominent (up to 1 km/sec) and thick (up to several hundred meters) velocity and density reversals in the logs refute the common assumption that velocities and densities increase monotonically with depth.

40 CFR 146.87 - Logging, sampling, and testing prior to injection well operation.

Code of Federal Regulations, 2014 CFR

2014-07-01

... owner or operator must submit to the Director a descriptive report prepared by a knowledgeable log... installed; and (ii) A cement bond and variable density log to evaluate cement quality radially, and a...

40 CFR 146.87 - Logging, sampling, and testing prior to injection well operation.

Code of Federal Regulations, 2012 CFR

2012-07-01

... owner or operator must submit to the Director a descriptive report prepared by a knowledgeable log... installed; and (ii) A cement bond and variable density log to evaluate cement quality radially, and a...

40 CFR 146.87 - Logging, sampling, and testing prior to injection well operation.

Code of Federal Regulations, 2011 CFR

2011-07-01

... owner or operator must submit to the Director a descriptive report prepared by a knowledgeable log... installed; and (ii) A cement bond and variable density log to evaluate cement quality radially, and a...

40 CFR 146.87 - Logging, sampling, and testing prior to injection well operation.

Code of Federal Regulations, 2013 CFR

2013-07-01

... owner or operator must submit to the Director a descriptive report prepared by a knowledgeable log... installed; and (ii) A cement bond and variable density log to evaluate cement quality radially, and a...

[Characteristics of soil seed banks in logging gaps of forests at different succession stages in Changbai Mountains].

PubMed

Zhang, Zhi-Ting; Song, Xin-Zhang; Xiao, Wen-Fa; Gao, Bao-Jia; Guo, Zhong-Ling

2009-06-01

An investigation was made on the soil seed banks in the logging gaps of Populus davidiana--Betula platyphylla secondary forest, secondary broad-leaved forest, and broad-leaved Korean pine mixed forest at their different succession stages in Changbai Mountains. Among the test forests, secondary broad-leaved forest had the highest individual density (652 ind x m(-2)) in its soil seed bank. With the succession of forest community, the diversity and uniformity of soil seed bank increased, but the dominance decreased. The seed density of climax species such as Pinus koraiensis, Abies nephrolepis, and Acer mono increased, whereas that of Maackia amurensis and Fraxinus mandshurica decreased. Moreover, the similarity in species composition between soil seed bank and the seedlings within logging gaps became higher. The individual density and similarity between soil seed bank and the seedlings in non-logging gaps were similar to those in logging gaps. All of these indicated that soil seed bank provided rich seed resources for forest recovery and succession, and the influence of soil seed bank on seedlings regeneration increased with the succession.

40 CFR 146.12 - Construction requirements.

Code of Federal Regulations, 2010 CFR

2010-07-01

...; and (B) A cement bond, temperature, or density log after the casing is set and cemented. (ii) For... cement bond, temperature, or density log after the casing is set and cemented. (e) At a minimum, the... water. The casing and cement used in the construction of each newly drilled well shall be designed for...

Density and velocity relationships for digital sonic and density logs from coastal Washington and laboratory measurements of Olympic Peninsula mafic rocks and greywackes

USGS Publications Warehouse

Brocher, Thomas M.; Christensen, Nikolas I.

2001-01-01

Three-dimensional velocity models for the basins along the coast of Washington and in Puget Lowland provide a means for better understanding the lateral variations in strong ground motions recorded there. We have compiled 16 sonic and 18 density logs from 22 oil test wells to help us determine the geometry and physical properties of the Cenozoic basins along coastal Washington. The depth ranges sampled by the test-well logs fall between 0.3 and 2.1 km. These well logs sample Quaternary to middle Eocene sedimentary rocks of the Quinault Formation, Montesano Formation, and Hoh rock assemblage. Most (18 or 82%) of the wells are from Grays Harbor County, and many of these are from the Ocean City area. These Grays Harbor County wells sample the Quinault Formation, Montesano Formation, and frequently bottom in the Hoh rock assemblage. These wells show that the sonic velocity and density normally increase significantly across the contacts between the Quinault or the Montesano Formations and the Hoh rock assemblage. Reflection coefficients calculated for vertically traveling compressional waves from the average velocities and densities for these units suggest that the top of the Hoh rock assemblage is a strong reflector of downward-propagating seismic waves: these reflection coefficients lie between 11 and 20%. Thus, this boundary may reflect seismic energy upward and trap a substantial portion of the seismic energy generated by future earthquakes within the Miocene and younger sedimentary basins found along the Washington coast. Three wells from Jefferson County provide data for the Hoh rock assemblage for the entire length of the logs. One well (Eastern Petroleum Sniffer Forks #1), from the Forks area in Clallam County, also exclusively samples the Hoh rock assemblage. This report presents the locations, elevations, depths, stratigraphic, and other information for all the oil test wells, and provides plots showing the density and sonic velocities as a function of depth for each well log. We also present two-way traveltimes for 15 of the wells calculated from the sonic velocities. Average velocities and densities for the wells having both logs can be reasonably well related using a modified Gardner’s rule, with p=1825v1/4, where p is the density (in kg/m3) and v is the sonic velocity (in km/s). In contrast, a similar analysis of published well logs from Puget Lowland is best matched by a Gardner’s rule of p=1730v1/4, close to the p=1740v1/4 proposed by Gardner et al. (1974). Finally, we present laboratory measurements of compressional-wave velocity, shear-wave velocity, and density for 11 greywackes and 29 mafic rocks from the Olympic Peninsula and Puget Lowland. These units have significance for earthquake-hazard investigations in Puget Lowland as they dip eastward beneath the Lowland, forming the “bedrock” beneath much of the lowland. Average Vp/Vs ratios for the mafic rocks, mainly Crescent Formation volcanics, lie between 1.81 and 1.86. Average Vp/Vs ratios for the greywackes from the accretionary core complex in the Olympic Peninsula show greater scatter but lie between 1.77 and 1.88. Both the Olympic Peninsula mafic rocks and greywackes have lower shear-wave velocities than would be expected for a Poisson solid (Vp/Vs=1.732). Although the P-wave velocities and densities in the greywackes can be related by a Gardner’s rule of p=1720v1/4, close to the p=1740v1/4 proposed by Gardner et al. (1974), the velocities and densities of the mafic rocks are best related by a Gardner’s rule of p=1840v1/4. Thus, the density/velocity relations are similar for the Puget Lowland well logs and greywackes from the Olympic Peninsula. Density/velocity relations are similar for the Washington coastal well logs and mafic rocks from the Olympic Peninsula, but differ from those of the Puget Lowland well logs and greywackes from the Olympic Peninsula.

A method to describe inelastic gamma field distribution in neutron gamma density logging.

PubMed

Zhang, Feng; Zhang, Quanying; Liu, Juntao; Wang, Xinguang; Wu, He; Jia, Wenbao; Ti, Yongzhou; Qiu, Fei; Zhang, Xiaoyang

2017-11-01

Pulsed neutron gamma density logging (NGD) is of great significance for radioprotection and density measurement in LWD, however, the current methods have difficulty in quantitative calculation and single factor analysis for the inelastic gamma field distribution. In order to clarify the NGD mechanism, a new method is developed to describe the inelastic gamma field distribution. Based on the fast-neutron scattering and gamma attenuation, the inelastic gamma field distribution is characterized by the inelastic scattering cross section, fast-neutron scattering free path, formation density and other parameters. And the contribution of formation parameters on the field distribution is quantitatively analyzed. The results shows the contribution of density attenuation is opposite to that of inelastic scattering cross section and fast-neutron scattering free path. And as the detector-spacing increases, the density attenuation gradually plays a dominant role in the gamma field distribution, which means large detector-spacing is more favorable for the density measurement. Besides, the relationship of density sensitivity and detector spacing was studied according to this gamma field distribution, therefore, the spacing of near and far gamma ray detector is determined. The research provides theoretical guidance for the tool parameter design and density determination of pulsed neutron gamma density logging technique. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seismic velocity deviation log: An effective method for evaluating spatial distribution of reservoir pore types

NASA Astrophysics Data System (ADS)

Shirmohamadi, Mohamad; Kadkhodaie, Ali; Rahimpour-Bonab, Hossain; Faraji, Mohammad Ali

2017-04-01

Velocity deviation log (VDL) is a synthetic log used to determine pore types in reservoir rocks based on a combination of the sonic log with neutron-density logs. The current study proposes a two step approach to create a map of porosity and pore types by integrating the results of petrographic studies, well logs and seismic data. In the first step, velocity deviation log was created from the combination of the sonic log with the neutron-density log. The results allowed identifying negative, zero and positive deviations based on the created synthetic velocity log. Negative velocity deviations (below - 500 m/s) indicate connected or interconnected pores and fractures, while positive deviations (above + 500 m/s) are related to isolated pores. Zero deviations in the range of [- 500 m/s, + 500 m/s] are in good agreement with intercrystalline and microporosities. The results of petrographic studies were used to validate the main pore type derived from velocity deviation log. In the next step, velocity deviation log was estimated from seismic data by using a probabilistic neural network model. For this purpose, the inverted acoustic impedance along with the amplitude based seismic attributes were formulated to VDL. The methodology is illustrated by performing a case study from the Hendijan oilfield, northwestern Persian Gulf. The results of this study show that integration of petrographic, well logs and seismic attributes is an instrumental way for understanding the spatial distribution of main reservoir pore types.

Effects of host plant and larval density on intraspecific competition in larvae of the emerald ash borer (Coleoptera: Buprestidae).

PubMed

Duan, Jian J; Larson, Kristi; Watt, Tim; Gould, Juli; Lelito, Jonathan P

2013-12-01

Competition for food, mates, and space among different individuals of the same insect species can affect density-dependent regulation of insect abundance or population dynamics. The emerald ash borer, Agrilus planipennis Fairmaire (Coleoptera: Buprestidae), is a serious invasive pest of North American ash (Fraxinus spp.) trees, with its larvae feeding in serpentine galleries between the interface of sapwood and phloem tissues of ash trees. Using artificial infestation of freshly cut logs of green ash (Fraxinus pennsylvanica Marshall) and tropical ash (Fraxinus uhdei [Wenzig] Lingelsh) with a series of egg densities, we evaluated the mechanism and outcome of intraspecific competition in larvae of A. planipennis in relation to larval density and host plant species. Results from our study showed that as the egg densities on each log (1.5-6.5 cm in diameter and 22-25 cm in length) increased from 200 to 1,600 eggs per square meter of surface area, larval survivorship declined from ≍68 to 10% for the green ash logs, and 86 to 55% for tropical ash logs. Accordingly, larval mortality resulting from cannibalism, starvation, or both, significantly increased as egg density increased, and the biomass of surviving larvae significantly decreased on both ash species. When larval density was adjusted to the same level, however, larval mortality from intraspecific competition was significantly higher and mean biomasses of surviving larvae was significantly lower in green ash than in tropical ash. The role of intraspecific competition of A. planipennis larvae in density-dependent regulation of its natural population dynamics is discussed.

Impacts of logging on density-dependent predation of dipterocarp seeds in a South East Asian rainforest.

PubMed

Bagchi, Robert; Philipson, Christopher D; Slade, Eleanor M; Hector, Andy; Phillips, Sam; Villanueva, Jerome F; Lewis, Owen T; Lyal, Christopher H C; Nilus, Reuben; Madran, Adzley; Scholes, Julie D; Press, Malcolm C

2011-11-27

Much of the forest remaining in South East Asia has been selectively logged. The processes promoting species coexistence may be the key to the recovery and maintenance of diversity in these forests. One such process is the Janzen-Connell mechanism, where specialized natural enemies such as seed predators maintain diversity by inhibiting regeneration near conspecifics. In Neotropical forests, anthropogenic disturbance can disrupt the Janzen-Connell mechanism, but similar data are unavailable for South East Asia. We investigated the effects of conspecific density (two spatial scales) and distance from fruiting trees on seed and seedling survival of the canopy tree Parashorea malaanonan in unlogged and logged forests in Sabah, Malaysia. The production of mature seeds was higher in unlogged forest, perhaps because high adult densities facilitate pollination or satiate pre-dispersal predators. In both forest types, post-dispersal survival was reduced by small-scale (1 m(2)) conspecific density, but not by proximity to the nearest fruiting tree. Large-scale conspecific density (seeds per fruiting tree) reduced predation, probably by satiating predators. Higher seed production in unlogged forest, in combination with slightly higher survival, meant that recruitment was almost entirely limited to unlogged forest. Thus, while logging might not affect the Janzen-Connell mechanism at this site, it may influence the recruitment of particular species.

Estimating load weights with Huber's Cubic Volume formula: a field trial.

Treesearch

Dale R. Waddell

1989-01-01

Log weights were estimated from the product of Huber's cubic volume formula and green density. Tags showing estimated log weights were attached to logs in the field, and the weights were tallied into a single load weight as logs were assembled for aerial yarding. Accuracy of the estimated load weights was evaluated by comparing the predicted with the actual load...

The bias of the log power spectrum for discrete surveys

NASA Astrophysics Data System (ADS)

Repp, Andrew; Szapudi, István

2018-03-01

A primary goal of galaxy surveys is to tighten constraints on cosmological parameters, and the power spectrum P(k) is the standard means of doing so. However, at translinear scales P(k) is blind to much of these surveys' information - information which the log density power spectrum recovers. For discrete fields (such as the galaxy density), A* denotes the statistic analogous to the log density: A* is a `sufficient statistic' in that its power spectrum (and mean) capture virtually all of a discrete survey's information. However, the power spectrum of A* is biased with respect to the corresponding log spectrum for continuous fields, and to use P_{A^*}(k) to constrain the values of cosmological parameters, we require some means of predicting this bias. Here, we present a prescription for doing so; for Euclid-like surveys (with cubical cells 16h-1 Mpc across) our bias prescription's error is less than 3 per cent. This prediction will facilitate optimal utilization of the information in future galaxy surveys.

Maintaining ecosystem resilience: functional responses of tree cavity nesters to logging in temperate forests of the Americas.

PubMed

Ibarra, José Tomás; Martin, Michaela; Cockle, Kristina L; Martin, Kathy

2017-06-30

Logging often reduces taxonomic diversity in forest communities, but little is known about how this biodiversity loss affects the resilience of ecosystem functions. We examined how partial logging and clearcutting of temperate forests influenced functional diversity of birds that nest in tree cavities. We used point-counts in a before-after-control-impact design to examine the effects of logging on the value, range, and density of functional traits in bird communities in Canada (21 species) and Chile (16 species). Clearcutting, but not partial logging, reduced diversity in both systems. The effect was much more pronounced in Chile, where logging operations removed critical nesting resources (large decaying trees), than in Canada, where decaying aspen Populus tremuloides were retained on site. In Chile, logging was accompanied by declines in species richness, functional richness (amount of functional niche occupied by species), community-weighted body mass (average mass, weighted by species densities), and functional divergence (degree of maximization of divergence in occupied functional niche). In Canada, clearcutting did not affect species richness but nevertheless reduced functional richness and community-weighted body mass. Although some cavity-nesting birds can persist under intensive logging operations, their ecosystem functions may be severely compromised unless future nest trees can be retained on logged sites.

Must Star-forming Galaxies Rapidly Get Denser before They Quench?

NASA Astrophysics Data System (ADS)

Abramson, L. E.; Morishita, T.

2018-05-01

Using the deepest data yet obtained, we find no evidence preferring compaction-triggered quenching—where rapid increases in galaxy density truncate star formation—over a null hypothesis in which galaxies age at constant surface density ({{{Σ }}}e\\equiv {M}* /2π {r}e2). Results from two fully empirical analyses and one quenching-free model calculation support this claim at all z ≤ 3: (1) qualitatively, galaxies’ mean U–V colors at 6.5 ≲ {log}{{{Σ }}}e/{\\text{}}{M}ȯ {kpc}}-2≲ 10 have reddened at rates/times correlated with {{{Σ }}}e, implying that there is no density threshold at which galaxies turn red but that {{{Σ }}}e sets the pace of maturation; (2) quantitatively, the abundance of {log}{M}* /{\\text{}}{M}ȯ ≥slant 9.4 red galaxies never exceeds that of the total population a quenching time earlier at any {{{Σ }}}e, implying that galaxies need not transit from low to high densities before quenching; (3) applying d{log}{r}e/{dt}=1/2 d{log}{M}* /{dt} to a suite of lognormal star formation histories reproduces the evolution of the size–mass relation at {log}{M}* /{\\text{}}{M}ȯ ≥slant 10. All results are consistent with evolutionary rates being set ab initio by global densities, with denser objects evolving faster than less-dense ones toward a terminal quiescence induced by gas depletion or other ∼Hubble-timescale phenomena. Unless stellar ages demand otherwise, observed {{{Σ }}}e thresholds need not bear any physical relation to quenching beyond this intrinsic density–formation epoch correlation, adding to Lilly & Carollo’s arguments to that effect.

Using nonlinear quantile regression to estimate the self-thinning boundary curve

Treesearch

Quang V. Cao; Thomas J. Dean

2015-01-01

The relationship between tree size (quadratic mean diameter) and tree density (number of trees per unit area) has been a topic of research and discussion for many decades. Starting with Reineke in 1933, the maximum size-density relationship, on a log-log scale, has been assumed to be linear. Several techniques, including linear quantile regression, have been employed...

Use of alternative carrier materials in AOAC Official Method 2008.05, efficacy of liquid sporicides against spores of Bacillus subtilis on a hard, nonporous surface, quantitative three-step method.

PubMed

Tomasino, Stephen F; Rastogi, Vipin K; Wallace, Lalena; Smith, Lisa S; Hamilton, Martin A; Pines, Rebecca M

2010-01-01

The quantitative Three-Step Method (TSM) for testing the efficacy of liquid sporicides against spores of Bacillus subtilis on a hard, nonporous surface (glass) was adopted as AOAC Official Method 2008.05 in May 2008. The TSM uses 5 x 5 x 1 mm coupons (carriers) upon which spores have been inoculated and which are introduced into liquid sporicidal agent contained in a microcentrifuge tube. Following exposure of inoculated carriers and neutralization, spores are removed from carriers in three fractions (gentle washing, fraction A; sonication, fraction B; and gentle agitation, fraction C). Liquid from each fraction is serially diluted and plated on a recovery medium for spore enumeration. The counts are summed over the three fractions to provide the density (viable spores per carrier), which is log10-transformed to arrive at the log density. The log reduction is calculated by subtracting the mean log density for treated carriers from the mean log density for control carriers. This paper presents a single-laboratory investigation conducted to evaluate the applicability of using two porous carrier materials (ceramic tile and untreated pine wood) and one alternative nonporous material (stainless steel). Glass carriers were included in the study as the reference material. Inoculated carriers were evaluated against three commercially available liquid sporicides (sodium hypochlorite, a combination of peracetic acid and hydrogen peroxide, and glutaraldehyde), each at two levels of presumed efficacy (medium and high) to provide data for assessing the responsiveness of the TSM. Three coupons of each material were evaluated across three replications at each level; three replications of a control were required. Even though all carriers were inoculated with approximately the same number of spores, the observed counts of recovered spores were consistently higher for the nonporous carriers. For control carriers, the mean log densities for the four materials ranged from 6.63 for wood to 7.14 for steel. The pairwise differences between mean log densities, except for glass minus steel, were statistically significant (P < 0.001). The repeatability standard deviations (Sr) for the mean control log density per test were similar for the four materials, ranging from 0.08 for wood to 0.13 for tile. Spore recovery from the carrier materials ranged from approximately 20 to 70%: 20% (pine wood), 40% (ceramic tile), 55% (glass), and 70% (steel). Although the percent spore recovery from pine wood was significantly lower than that from other materials, the performance data indicate that the TSM provides a repeatable and responsive test for determining the efficacy of liquid sporicides on both porous and nonporous materials.

Coarse woody debris in undisturbed and logged forests in the eastern Brazilian Amazon.

Treesearch

Michael Keller; Michael Palace; Gregory P. Asner; Rodrigo Jr. Pereira; Jose Natalino M. Silva

2004-01-01

Coarse woody debris (CWD) is an important component of the carbon cycle in tropical forests. We measured the volume and density of fallen CWD at two sites, Cauaxi and Tapajós in the Eastern Amazon. At both sites we studied undisturbed forests (UFs) and logged forests 1 year after harvest. Conventional logging (CL) and reduced impact logging (RIL) were...

Effects of Mechanical Soil Disturbance on Rill Connectivity and Soil Erosion Following Logging on Burned Hillslopes in Central California

NASA Astrophysics Data System (ADS)

Olsen, W.; Wagenbrenner, J. W.; Demirtas, I.; Robichaud, P. R.

2016-12-01

Soil erosion rates in forests increase after severe fires and may pose a threat to aquatic resources. While research has shown that the harvest of burned trees ("salvage logging") may elevate post-fire erosion, it is less clear how disturbance from logging affects rill erosion and sediment yields. We studied 14 catchments (900-7400 m2 "swales") in the area burned by the 2013 Rim Fire in the California Sierra Nevada, nine of which were burned and logged, and five that were burned and unlogged. We installed silt fences, surveyed mechanical disturbance and rill networks, and measured ground cover following logging that occurred between fall 2014 and fall 2015. The logged swales had 20-162 trees ha-1 removed, and high traffic skid trails covered 8-28% of the swale area while low traffic skid trails covered 0-13% of the area. Feller-buncher tracks were minimal at 0-6% of the swale area. Following logging, wood cover increased, while vegetation cover remained about the same. Rills densities ranged from 0.3-22 m m-2 in logged swales and 2.2-16 m m-2 in unlogged swales. Higher bare soil percentages led to increased rill density in all swales. Rills that initiated in high traffic skid trails averaged 42 m in the swales, while rills from untrafficked burned soil averaged 26 m. The number of rills from high traffic skid trails increased with the amount of skid trail area, and often were diverted by waterbars toward the swale outlets. Sediment yields increased with rill density, and did not appear to respond to the modest increase in wood cover post-logging. Results indicate that rill erosion is a dominant sediment transport mechanism for both burned forests and salvage logged forests at the hillslope to small catchment scale. Mitigating skidding disturbance, appropriate placement of waterbars, and reducing the connectivity of bare soil after logging will be important to reduce rilling and sediment yields related to salvage logging.

Quantification of Organic richness through wireline logs: a case study of Roseneath shale formation, Cooper basin, Australia

NASA Astrophysics Data System (ADS)

Ahmad, Maqsood; Iqbal, Omer; Kadir, Askury Abd

2017-10-01

The late Carboniferous-Middle Triassic, intracratonic Cooper basin in northeastern South Australia and southwestern Queensland is Australia's foremost onshore hydrocarbon producing region. The basin compromises Permian carbonaceous shale like lacustrine Roseneath and Murteree shale formation which is acting as source and reservoir rock. The source rock can be distinguished from non-source intervals by lower density, higher transit time, higher gamma ray values, higher porosity and resistivity with increasing organic content. In current dissertation we have attempted to compare the different empirical approaches based on density relation and Δ LogR method through three overlays of sonic/resistivity, neutron/resistivity and density/resistivity to quantify Total organic content (TOC) of Permian lacustrine Roseneath shale formation using open hole wireline log data (DEN, GR, CNL, LLD) of Encounter 1 well. The TOC calculated from fourteen density relations at depth interval between 3174.5-3369 meters is averaged 0.56% while TOC from sonic/resistivity, neutron/resistivity and density/resistivity yielded an average value of 3.84%, 3.68%, 4.40%. The TOC from average of three overlay method is yielded to 3.98%. According to geochemical report in PIRSA the Roseneath shale formation has TOC from 1 - 5 wt %.There is unpromising correlations observed for calculated TOC from fourteen density relations and measured TOC on samples. The TOC from average value of three overlays using Δ LogR method showed good correlation with measured TOC on samples.

Impacts of logging on density-dependent predation of dipterocarp seeds in a South East Asian rainforest

PubMed Central

Bagchi, Robert; Philipson, Christopher D.; Slade, Eleanor M.; Hector, Andy; Phillips, Sam; Villanueva, Jerome F.; Lewis, Owen T.; Lyal, Christopher H. C.; Nilus, Reuben; Madran, Adzley; Scholes, Julie D.; Press, Malcolm C.

2011-01-01

Much of the forest remaining in South East Asia has been selectively logged. The processes promoting species coexistence may be the key to the recovery and maintenance of diversity in these forests. One such process is the Janzen–Connell mechanism, where specialized natural enemies such as seed predators maintain diversity by inhibiting regeneration near conspecifics. In Neotropical forests, anthropogenic disturbance can disrupt the Janzen–Connell mechanism, but similar data are unavailable for South East Asia. We investigated the effects of conspecific density (two spatial scales) and distance from fruiting trees on seed and seedling survival of the canopy tree Parashorea malaanonan in unlogged and logged forests in Sabah, Malaysia. The production of mature seeds was higher in unlogged forest, perhaps because high adult densities facilitate pollination or satiate pre-dispersal predators. In both forest types, post-dispersal survival was reduced by small-scale (1 m2) conspecific density, but not by proximity to the nearest fruiting tree. Large-scale conspecific density (seeds per fruiting tree) reduced predation, probably by satiating predators. Higher seed production in unlogged forest, in combination with slightly higher survival, meant that recruitment was almost entirely limited to unlogged forest. Thus, while logging might not affect the Janzen–Connell mechanism at this site, it may influence the recruitment of particular species. PMID:22006965

APPROXIMATION AND ESTIMATION OF s-CONCAVE DENSITIES VIA RÉNYI DIVERGENCES.

PubMed

Han, Qiyang; Wellner, Jon A

2016-01-01

In this paper, we study the approximation and estimation of s -concave densities via Rényi divergence. We first show that the approximation of a probability measure Q by an s -concave density exists and is unique via the procedure of minimizing a divergence functional proposed by [ Ann. Statist. 38 (2010) 2998-3027] if and only if Q admits full-dimensional support and a first moment. We also show continuity of the divergence functional in Q : if Q n → Q in the Wasserstein metric, then the projected densities converge in weighted L 1 metrics and uniformly on closed subsets of the continuity set of the limit. Moreover, directional derivatives of the projected densities also enjoy local uniform convergence. This contains both on-the-model and off-the-model situations, and entails strong consistency of the divergence estimator of an s -concave density under mild conditions. One interesting and important feature for the Rényi divergence estimator of an s -concave density is that the estimator is intrinsically related with the estimation of log-concave densities via maximum likelihood methods. In fact, we show that for d = 1 at least, the Rényi divergence estimators for s -concave densities converge to the maximum likelihood estimator of a log-concave density as s ↗ 0. The Rényi divergence estimator shares similar characterizations as the MLE for log-concave distributions, which allows us to develop pointwise asymptotic distribution theory assuming that the underlying density is s -concave.

APPROXIMATION AND ESTIMATION OF s-CONCAVE DENSITIES VIA RÉNYI DIVERGENCES

PubMed Central

Han, Qiyang; Wellner, Jon A.

2017-01-01

In this paper, we study the approximation and estimation of s-concave densities via Rényi divergence. We first show that the approximation of a probability measure Q by an s-concave density exists and is unique via the procedure of minimizing a divergence functional proposed by [Ann. Statist. 38 (2010) 2998–3027] if and only if Q admits full-dimensional support and a first moment. We also show continuity of the divergence functional in Q: if Qn → Q in the Wasserstein metric, then the projected densities converge in weighted L1 metrics and uniformly on closed subsets of the continuity set of the limit. Moreover, directional derivatives of the projected densities also enjoy local uniform convergence. This contains both on-the-model and off-the-model situations, and entails strong consistency of the divergence estimator of an s-concave density under mild conditions. One interesting and important feature for the Rényi divergence estimator of an s-concave density is that the estimator is intrinsically related with the estimation of log-concave densities via maximum likelihood methods. In fact, we show that for d = 1 at least, the Rényi divergence estimators for s-concave densities converge to the maximum likelihood estimator of a log-concave density as s ↗ 0. The Rényi divergence estimator shares similar characterizations as the MLE for log-concave distributions, which allows us to develop pointwise asymptotic distribution theory assuming that the underlying density is s-concave. PMID:28966410

Determining the depositional pattern by resistivity-seismic inversion for the aquifer system of Maira area, Pakistan.

PubMed

Akhter, Gulraiz; Farid, Asim; Ahmad, Zulfiqar

2012-01-01

Velocity and density measured in a well are crucial for synthetic seismic generation which is, in turn, a key to interpreting real seismic amplitude in terms of lithology, porosity and fluid content. Investigations made in the water wells usually consist of spontaneous potential, resistivity long and short normal, point resistivity and gamma ray logs. The sonic logs are not available because these are usually run in the wells drilled for hydrocarbons. To generate the synthetic seismograms, sonic and density logs are required, which are useful to precisely mark the lithology contacts and formation tops. An attempt has been made to interpret the subsurface soil of the aquifer system by means of resistivity to seismic inversion. For this purpose, resistivity logs and surface resistivity sounding were used and the resistivity logs were converted to sonic logs whereas surface resistivity sounding data transformed into seismic curves. The converted sonic logs and the surface seismic curves were then used to generate synthetic seismograms. With the utilization of these synthetic seismograms, pseudo-seismic sections have been developed. Subsurface lithologies encountered in wells exhibit different velocities and densities. The reflection patterns were marked by using amplitude standout, character and coherence. These pseudo-seismic sections were later tied to well synthetics and lithologs. In this way, a lithology section was created for the alluvial fill. The cross-section suggested that the eastern portion of the studied area mainly consisted of sandy fill and the western portion constituted clayey part. This can be attributed to the depositional environment by the Indus and the Kabul Rivers.

Petrophysical rock properties of the Bazhenov Formation of the South-Eastern part of Kaymysovsky Vault (Tomsk Region)

NASA Astrophysics Data System (ADS)

Gorshkov, A. M.; Kudryashova, L. K.; Lee-Van-Khe, O. S.

2016-09-01

The article presents the results of studying petrophysical rock properties of the Bazhenov Formation of the South-Eastern part of Kaymysovsky Vault with the Gas Research Institute (GRI) method. The authors have constructed dependence charts for bulk and grain density, open porosity and matrix permeability vs. depth. The results of studying petrophysical properties with the GRI method and core description have allowed dividing the entire section into three intervals each of which characterized by different conditions of Bazhenov Formation rock formation. The authors have determined a correlation between the compensated neutron log and the rock density vs. depth chart on the basis of complex well logging and petrophysical section analysis. They have determined a promising interval for producing hydrocarbons from the Bazhenov Formation in the well under study. Besides, they have determined the typical behavior of compensated neutron logs and SP logs on well logs for this interval. These studies will allow re-interpreting available well logs in order to determine the most promising interval to be involved in Bazhenov Formation development in Tomsk Region.

Finding Faults: Tohoku and other Active Megathrusts/Megasplays

NASA Astrophysics Data System (ADS)

Moore, J. C.; Conin, M.; Cook, B. J.; Kirkpatrick, J. D.; Remitti, F.; Chester, F.; Nakamura, Y.; Lin, W.; Saito, S.; Scientific Team, E.

2012-12-01

Current subduction-fault drilling procedure is to drill a logging hole, identify target faults, then core and instrument them. Seismic data may constrain faults but the additional resolution of borehole logs is necessary for efficient coring and instrumentation under difficult conditions and tight schedules. Thus, refining the methodology of identifying faults in logging data has become important, and thus comparison of log signatures of faults in different locations is worthwhile. At the C0019 (JFAST) drill site, the Tohoku megathrust was principally identified as a decollement where steep cylindrically-folded bedding abruptly flattens below the basal detachment. A similar structural contrast occurs across a megasplay fault in the NanTroSEIZE transect (Site C0004). At the Tohoku decollement, a high gamma-ray value from a pelagic clay layer, predicted as a likely decollement sediment type, strengthens the megathrust interpretation. The original identification of the pelagic clay as a decollement candidate was based on results of previous coring of an oceanic reference site. Negative density anomalies, often seen as low resistivity zones, identified a subsidiary fault in the deformed prism overlying the Tohoku megathrust. Elsewhere, at Barbados, Nankai (Moroto), and Costa Rica, negative density anomalies are associated with the decollement and other faults in hanging walls. Log-based density anomalies in fault zones provide a basis for recognizing in-situ fault zone dilation. At the Tohoku Site C0019, breakouts are present above but not below the megathrust. Changes in breakout orientation and width (stress magnitude) occur across megasplay faults at Sites C0004 and C0010 in the NantroSEIZE transect. Annular pressure anomalies are not apparent at the Tohoku megathrust, but are variably associated with faults and fracture zones drilled along the NanTroSEIZE transect. Overall, images of changes in structural features, negative density anomalies, and changes in breakout occurrence and orientation provide the most common log criteria for recognizing major thrust zones in ocean drilling holes at convergent margins. In the case of JFAST, identification of faults by logging was confirmed during subsequent coring activities, and logging data was critical for successful placement of the observatory down hole.

Reduced density gradient as a novel approach for estimating QSAR descriptors, and its application to 1, 4-dihydropyridine derivatives with potential antihypertensive effects.

PubMed

Jardínez, Christiaan; Vela, Alberto; Cruz-Borbolla, Julián; Alvarez-Mendez, Rodrigo J; Alvarado-Rodríguez, José G

2016-12-01

The relationship between the chemical structure and biological activity (log IC 50 ) of 40 derivatives of 1,4-dihydropyridines (DHPs) was studied using density functional theory (DFT) and multiple linear regression analysis methods. With the aim of improving the quantitative structure-activity relationship (QSAR) model, the reduced density gradient s( r) of the optimized equilibrium geometries was used as a descriptor to include weak non-covalent interactions. The QSAR model highlights the correlation between the log IC 50 with highest molecular orbital energy (E HOMO ), molecular volume (V), partition coefficient (log P), non-covalent interactions NCI(H4-G) and the dual descriptor [Δf(r)]. The model yielded values of R 2 =79.57 and Q 2 =69.67 that were validated with the next four internal analytical validations DK=0.076, DQ=-0.006, R P =0.056, and R N =0.000, and the external validation Q 2 boot =64.26. The QSAR model found can be used to estimate biological activity with high reliability in new compounds based on a DHP series. Graphical abstract The good correlation between the log IC 50 with the NCI (H4-G) estimated by the reduced density gradient approach of the DHP derivatives.

Research on the physical properties of supercritical CO2 and the log evaluation of CO2-bearing volcanic reservoirs

NASA Astrophysics Data System (ADS)

Pan, Baozhi; Lei, Jian; Zhang, Lihua; Guo, Yuhang

2017-10-01

CO2-bearing reservoirs are difficult to distinguish from other natural gas reservoirs during gas explorations. Due to the lack of physical parameters for supercritical CO2, particularly neutron porosity, at present a hydrocarbon gas log evaluation method is used to evaluate CO2-bearing reservoirs. The differences in the physical properties of hydrocarbon and CO2 gases have led to serious errors. In this study, the deep volcanic rock of the Songliao Basin was the research area. In accordance with the relationship between the density and acoustic velocity of supercritical CO2 and temperature and pressure, the regularity between the CO2 density and acoustic velocity, and the depth of the area was established. A neutron logging simulation was completed based on a Monte Carlo method. Through the simulation of the wet limestone neutron logging, the relationship between the count rate ratio of short and long space detectors and the neutron porosity was acquired. Then, the nature of the supercritical CO2 neutron moderation was obtained. With consideration given to the complexity of the volcanic rock mineral composition, a volcanic rock volume model was established, and the matrix neutron and density parameters were acquired using the ECS log. The properties of CO2 were applied in the log evaluation of the CO2-bearing volcanic reservoirs in the southern Songliao Basin. The porosity and saturation of CO2 were obtained, and a reasonable application was achieved in the CO2-bearing reservoir.

Comparison of MWD and wireline applications and decision criteria, Malay Basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zainun, K.; Redzuan, M.; Said, M.

1994-07-01

Since 1987, usage of measurement while drilling (MWD) technology within Esso Production Malaysia Inc. (EPMI) has evolved from an auxiliary directional drilling service to providing a reliable alternative to wireline logs for formation evaluation and well-completion purposes. The shift in EPMI's attitude toward the use of MWD in formation evaluation is attributed to the availability of a complete suite of logging services for the log analysis procedure, accuracy of the data, sufficient control in reservoir quality, and continuity in fields where there are already a high density of wireline-logged wells, increasing number of high angle and horizontal wells being drilled,more » a favorable track record, and realized economic benefits. The in-house analysis procedure, (EPMILOG[sup 6]), requires the availability of a deep and/or shallow investigating resistivity, formation density, neutron porosity, and gamma ray tools for a complete analysis. The availability of these services in MWD and also comparative evaluations of MWD responses with their correlative wireline counterparts show that MWD technology can be used, to a large extent, to complement or replace routine wireline logging services. MWD resistivity measurements are frequently observed to be less effected by mud filtrate invasion than the correlative wireline measurements and are, therefore, closer to the true resistivity of the formation. MWD formation evaluation services are most widely used in fields where there are already a high density of wells that were logged using wireline. The MWD data is used to decide perforation depths and intervals.« less

Interactions among forest age, valley and channel morphology, and log jams regulate animal production in mountain streams

NASA Astrophysics Data System (ADS)

Walters, D. M.; Venarsky, M. P.; Hall, R. O., Jr.; Herdrich, A.; Livers, B.; Winkelman, D.; Wohl, E.

2014-12-01

Forest age and local valley morphometry strongly influence the form and function of mountain streams in Colorado. Streams in valleys with old growth forest (>350 years) have extensive log jam complexes that create multi-thread channel reaches with extensive pool habitat and large depositional areas. Streams in younger unmanaged forests (e.g., 120 years old) and intensively managed forests have much fewer log jams and lower wood loads. These are single-thread streams dominated by riffles and with little depositional habitat. We hypothesized that log jam streams would retain more organic matter and have higher metabolism, leading to greater production of stream macroinvertebrates and trout. Log jam reaches should also have greater emergence of adult aquatic insects, and consequently have higher densities of riparian spiders taking advantage of these prey. Surficial organic matter was 3-fold higher in old-growth streams, and these streams had much higher ecosystem respiration. Insect production (g m2 y-1) was similar among forest types, but fish density was four times higher in old-growth streams with copious log jams. However, at the valley scale, insect production (g m-1 valley-1) and trout density (number m-1 valley-1) was 2-fold and 10-fold higher, respectively, in old growth streams. This finding is because multi-thread reaches created by log jams have much greater stream area and stream length per meter of valley than single-thread channels. The more limited response of macroinvertebrates may be related to fish predation. Trout in old growth streams had similar growth rates and higher fat content than fish in other streams in spite of occurring at higher densities and higher elevation/colder temperatures. This suggests that the positive fish effect observed in old growth streams is related to greater availability of invertebrate prey, which is consistent with our original hypothesis. Preliminary analyses suggest that spider densities do not respond strongly to differences in stream morphology, but rather to changes in elevation and associated air temperatures. These results demonstrate strong indirect effects of forest age and valley morphometry on organic matter storage and animal secondary production in streams that is mediated by direct effects associated with the presence or absence of logjams.

Logging methods and peeling of Aspen

Treesearch

T. Schantz-Hansen

1948-01-01

The logging of forest products is influenced by many factors, including the size of the trees, density of the stand, the soundness of the trees, size of the area logged, topography and soil, weather conditions, the degree of utilization, the skill of the logger and the equipment used, the distance from market, etc. Each of these factors influences not only the method...

Cosmological tests of the Hoyle-Narlikar conformal gravity

NASA Technical Reports Server (NTRS)

Canuto, V. M.; Narlikar, J. V.

1980-01-01

For the first time the Hoyle-Narlikar theory with creation of matter and a variable gravitational constant G, is subjected to the following cosmological tests: (1) the magnitude versus z relation, (2) the N(m) versus m relation for quasars, (3) the metric angular diameters versus z relation, (4) the isophotal angles versus z relation, (5) the log N-log S radio source count, and finally (6) the 3 K radiation. It is shown that the theory passes all these tests just as well as the standard cosmology, with the additional advantage that the geometry of the universe is uniquely determined, with a curvature parameter equal to zero. It is also interesting to note that the variability of G affects the log N-log S curve in a way similar to the density evolution introduced in standard cosmologies. The agreement with the data is therefore achieved without recourse to an ad hoc density evolution.

In-situ petrophysical properties of hotspot volcanoes. Results from ODP Leg 197, Detroit Seamount and HSDP II borehole, Hawaii

NASA Astrophysics Data System (ADS)

Kock, I.; Pechnig, R.; Buysch, A.; Clauser, C.

2003-04-01

During ODP Leg 197 an extensive logging program was run on Site 1203, Detroit Seamount. This seamount is part of the Emperor seamount chain, a continuation of the Hawaiian volcanic chain. Standard ODP/LDEO logging tool strings were used to measure porosity, density, resistivity, p- and s-wave velocities and gamma ray activity. The FMS-tool yielded detailed high resolution resistivity images of the borehole wall. By interpretation and statistical analysis of the logging parameters a petrophysical classification of the drilled rock content could be derived. The pillow lava recovered in the cores exhibits low porosity, low resistivity and high density. This indicates no or very little vesicles in the non-fractured rock unit. Compared to the pillow basalts, subaerial basalts show increasing porosity, gamma ray and potassium content and decreasing density, resistivity and velocity. A basalt with no or little vesicles and a basalt with average or many vesicles can clearly be distinguished. The volcaniclastics show lower resistivity, lower sonic velocities, higher porosities and lower densities than the basalts. Three different rock types can be distinguished within the volcaniclastics: Tuffs, resedimented tephra and breccia. The tuff shows medium porosity and density, low gamma ray and potassium content. The log responses from the resedimented tephra suggest that the tephra is more easily altered than the tuff. The log responses from the breccia lie between the tuff and tephra log responses, but the breccia can clearly be identified in the FMS borehole images. A similar rock content was found in the Hawaiian Scientific Drilling Project borehole. Gamma ray activity, electrical resistivity and sonic velocity were measured down to 2700 mbsl.. Compared to the 72-76 Ma old Detroit seamount basalts, the HSDP subaerial and submarine lava flows show a significant lower gamma ray activity, while sonic velocity and electrical resistivity are comparable. Deviations between the gamma ray activity might be due to the different primary compositions of the melt or to long lasting low temperature alteration. Investigations on this topic are in progress.

Post-wildfire logging hinders regeneration and increases fire risk.

PubMed

Donato, D C; Fontaine, J B; Campbell, J L; Robinson, W D; Kauffman, J B; Law, B E

2006-01-20

We present data from a study of early conifer regeneration and fuel loads after the 2002 Biscuit Fire, Oregon, USA, with and without postfire logging. Natural conifer regeneration was abundant after the high-severity fire. Postfire logging reduced median regeneration density by 71%, significantly increased downed woody fuels, and thus increased short-term fire risk. Additional reduction of fuels is necessary for effective mitigation of fire risk. Postfire logging can be counterproductive to the goals of forest regeneration and fuel reduction.

SWIFT BAT Survey of AGN

NASA Technical Reports Server (NTRS)

Tueller, J.; Mushotzky, R. F.; Barthelmy, S.; Cannizzo, J. K.; Gehrels, N.; Markwardt, C. B.; Skinner, G. K.; Winter, L. M.

2008-01-01

We present the results1 of the analysis of the first 9 months of data of the Swift BAT survey of AGN in the 14-195 keV band. Using archival X-ray data or follow-up Swift XRT observations, we have identified 129 (103 AGN) of 130 objects detected at [b] > 15deg and with significance > 4.8-delta. One source remains unidentified. These same X-ray data have allowed measurement of the X-ray properties of the objects. We fit a power law to the logN - log S distribution, and find the slope to be 1.42+/-0.14. Characterizing the differential luminosity function data as a broken power law, we find a break luminosity logL*(ergs/s)= 43.85+/-0.26. We obtain a mean photon index 1.98 in the 14-195 keV band, with an rms spread of 0.27. Integration of our luminosity function gives a local volume density of AGN above 10(exp 41) erg/s of 2.4x10(exp -3) Mpc(sup -3), which is about 10% of the total luminous local galaxy density above M* = -19.75. We have obtained X-ray spectra from the literature and from Swift XRT follow-up observations. These show that the distribution of log nH is essentially flat from nH = 10(exp 20)/sq cm to 10(exp 24)/sq cm, with 50% of the objects having column densities of less than 10(exp 22)/sq cm. BAT Seyfert galaxies have a median redshift of 0.03, a maximum log luminosity of 45.1, and approximately half have log nH > 22.

Index map of cross sections through parts of the Appalachian basin (Kentucky, New York, Ohio, Pennsylvania, Tennessee, Virginia, West Virginia): Chapter E.1 in Coal and petroleum resources in the Appalachian basin: distribution, geologic framework, and geochemical character

USGS Publications Warehouse

Ryder, Robert T.; Trippi, Michael H.; Ruppert, Leslie F.; Ryder, Robert T.

2014-01-01

The appendixes in chapters E.4.1 and E.4.2 include (1) Log ASCII Standard (LAS) files, which encode gamma-ray, neutron, density, and other logs in text files that can be used by most well-logging software programs; and (2) graphic well-log traces. In the appendix to chapter E.4.1, the well-log traces are accompanied by lithologic descriptions with formation tops.

Subsurface Rock Physical Properties by Downhole Loggings - Case Studies of Continental Deep Drilling in Kanto Distinct, Japan

NASA Astrophysics Data System (ADS)

Omura, K.

2014-12-01

In recent years, many examples of physical logging have been carried out in deep boreholes. The loggings are direct in-situ measurements of rock physical properties under the ground. They provide significant basic data for the geological, geophysical and geotechnical investigations, e.g., tectonic history, seismic wave propagation, and ground motion prediction. Since about 1980's, Natl. Res. Inst. for Earth Sci. and Disast. Prev. (NIED) dug deep boreholes (from 200m to 3000m depth) in sedimentary basin of Kanto distinct, Japan, for purposes of installing seismographs and hydrological instruments, and in-situ stress and pore pressure measurements. At that time, downhole physical loggings were conducted in the boreholes: spontaneous potential, electrical resistance, elastic wave velocity, formation density, neutron porosity, total gamma ray, caliper, temperature loggings. In many cases, digital data values were provided every 2m or 1m or 0.1m. In other cases, we read printed graphs of logging plots and got digital data values. Data from about 30 boreholes are compiled. Especially, particular change of logging data at the depth of an interface between a shallow part (soft sedimentary rock) and a base rock (equivalent to hard pre-Neogene rock) is examined. In this presentation, the correlations among physical properties of rock (especially, formation density, elastic wave velocity and electrical resistance) are introduced and the relation to the lithology is discussed. Formation density, elastic wave velocity and electric resistance data indicate the data are divide in two groups that are higher or lower than 2.5g/cm3: the one correspond to a shallow part and the other correspond to a base rock part. In each group, the elastic wave velocity and electric resistance increase with increase of formation density. However the rates of increases in the shallow part are smaller than in the base rock part. The shallow part has lower degree of solidification and higher porosity than that in the base rock part. It appears differences in the degree of solidification and/or porosity are related to differences in the increasing rates. The present data show that the physical logging data are effective information to explore where the base rock is and what properties of the base rock are different from those in the shallow part.

Ultraviolet Survey of CO and H2 in Diffuse Molecular Clouds: The Reflection of Two Photochemistry Regimes in Abundance Relationships

NASA Astrophysics Data System (ADS)

Sheffer, Y.; Rogers, M.; Federman, S. R.; Abel, N. P.; Gredel, R.; Lambert, D. L.; Shaw, G.

2008-11-01

We carried out a comprehensive far-UV survey of 12CO and H2 column densities along diffuse molecular Galactic sight lines. This sample includes new measurements of CO from HST spectra along 62 sight lines and new measurements of H2 from FUSE data along 58 sight lines. In addition, high-resolution optical data were obtained at the McDonald and European Southern Observatories, yielding new abundances for CH, CH+, and CN along 42 sight lines to aid in interpreting the CO results. These new sight lines were selected according to detectable amounts of CO in their spectra and provide information on both lower density (<=100 cm-3) and higher density diffuse clouds. A plot of log N(CO) versus log N(H2) shows that two power-law relationships are needed for a good fit of the entire sample, with a break located at log N(CO , cm -2) = 14.1 and log N(H2) = 20.4, corresponding to a change in production route for CO in higher density gas. Similar logarithmic plots among all five diatomic molecules reveal additional examples of dual slopes in the cases of CO versus CH (break at log N = 14.1, 13.0), CH+ versus H2 (13.1, 20.3), and CH+ versus CO (13.2, 14.1). We employ both analytical and numerical chemical schemes in order to derive details of the molecular environments. In the denser gas, where C2 and CN molecules also reside, reactions involving C+ and OH are the dominant factor leading to CO formation via equilibrium chemistry. In the low-density gas, where equilibrium chemistry studies have failed to reproduce the abundance of CH+, our numerical analysis shows that nonequilibrium chemistry must be employed for correctly predicting the abundances of both CH+ and CO.

Agnostic stacking of intergalactic doublet absorption: measuring the Ne VIII population

NASA Astrophysics Data System (ADS)

Frank, Stephan; Pieri, Matthew M.; Mathur, Smita; Danforth, Charles W.; Shull, J. Michael

2018-05-01

We present a blind search for doublet intergalactic metal absorption with a method dubbed `agnostic stacking'. Using a forward-modelling framework, we combine this with direct detections in the literature to measure the overall metal population. We apply this novel approach to the search for Ne VIII absorption in a set of 26 high-quality COS spectra. We probe to an unprecedented low limit of log N>12.3 at 0.47≤z ≤1.34 over a path-length Δz = 7.36. This method selects apparent absorption without requiring knowledge of its source. Stacking this mixed population dilutes doublet features in composite spectra in a deterministic manner, allowing us to measure the proportion corresponding to Ne VIII absorption. We stack potential Ne VIII absorption in two regimes: absorption too weak to be significant in direct line studies (12.3 < log N < 13.7), and strong absorbers (log N > 13.7). We do not detect Ne VIII absorption in either regime. Combining our measurements with direct detections, we find that the Ne VIII population is reproduced with a power-law column density distribution function with slope β = -1.86 ^{+0.18 }_{ -0.26} and normalization log f_{13.7} = -13.99 ^{+0.20 }_{ -0.23}, leading to an incidence rate of strong Ne VIII absorbers dn/dz =1.38 ^{+0.97 }_{ -0.82}. We infer a cosmic mass density for Ne VIII gas with 12.3 < log N < 15.0 of Ω _{{{Ne {VIII}}}} = 2.2 ^{+1.6 }_{ _-1.2} × 10^{-8}, a value significantly lower that than predicted by recent simulations. We translate this density into an estimate of the baryon density Ωb ≈ 1.8 × 10-3, constituting 4 per cent of the total baryonic mass.

Relationships between population density, fine-scale genetic structure, mating system and pollen dispersal in a timber tree from African rainforests.

PubMed

Duminil, J; Daïnou, K; Kaviriri, D K; Gillet, P; Loo, J; Doucet, J-L; Hardy, O J

2016-03-01

Owing to the reduction of population density and/or the environmental changes it induces, selective logging could affect the demography, reproductive biology and evolutionary potential of forest trees. This is particularly relevant in tropical forests where natural population densities can be low and isolated trees may be subject to outcross pollen limitation and/or produce low-quality selfed seeds that exhibit inbreeding depression. Comparing reproductive biology processes and genetic diversity of populations at different densities can provide indirect evidence of the potential impacts of logging. Here, we analysed patterns of genetic diversity, mating system and gene flow in three Central African populations of the self-compatible legume timber species Erythrophleum suaveolens with contrasting densities (0.11, 0.68 and 1.72 adults per ha). The comparison of inbreeding levels among cohorts suggests that selfing is detrimental as inbred individuals are eliminated between seedling and adult stages. Levels of genetic diversity, selfing rates (∼16%) and patterns of spatial genetic structure (Sp ∼0.006) were similar in all three populations. However, the extent of gene dispersal differed markedly among populations: the average distance of pollen dispersal increased with decreasing density (from 200 m in the high-density population to 1000 m in the low-density one). Overall, our results suggest that the reproductive biology and genetic diversity of the species are not affected by current logging practices. However, further investigations need to be conducted in low-density populations to evaluate (1) whether pollen limitation may reduce seed production and (2) the regeneration potential of the species.

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations.

PubMed

Vinson, C C; Kanashiro, M; Sebbenn, A M; Williams, T C R; Harris, S A; Boshier, D H

2015-08-01

The impact of logging and subsequent recovery after logging is predicted to vary depending on specific life history traits of the logged species. The Eco-gene simulation model was used to evaluate the long-term impacts of selective logging over 300 years on two contrasting Brazilian Amazon tree species, Dipteryx odorata and Jacaranda copaia. D. odorata (Leguminosae), a slow growing climax tree, occurs at very low densities, whereas J. copaia (Bignoniaceae) is a fast growing pioneer tree that occurs at high densities. Microsatellite multilocus genotypes of the pre-logging populations were used as data inputs for the Eco-gene model and post-logging genetic data was used to verify the output from the simulations. Overall, under current Brazilian forest management regulations, there were neither short nor long-term impacts on J. copaia. By contrast, D. odorata cannot be sustainably logged under current regulations, a sustainable scenario was achieved by increasing the minimum cutting diameter at breast height from 50 to 100 cm over 30-year logging cycles. Genetic parameters were only slightly affected by selective logging, with reductions in the numbers of alleles and single genotypes. In the short term, the loss of alleles seen in J. copaia simulations was the same as in real data, whereas fewer alleles were lost in D. odorata simulations than in the field. The different impacts and periods of recovery for each species support the idea that ecological and genetic information are essential at species, ecological guild or reproductive group levels to help derive sustainable management scenarios for tropical forests.

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations

PubMed Central

Vinson, C C; Kanashiro, M; Sebbenn, A M; Williams, T CR; Harris, S A; Boshier, D H

2015-01-01

The impact of logging and subsequent recovery after logging is predicted to vary depending on specific life history traits of the logged species. The Eco-gene simulation model was used to evaluate the long-term impacts of selective logging over 300 years on two contrasting Brazilian Amazon tree species, Dipteryx odorata and Jacaranda copaia. D. odorata (Leguminosae), a slow growing climax tree, occurs at very low densities, whereas J. copaia (Bignoniaceae) is a fast growing pioneer tree that occurs at high densities. Microsatellite multilocus genotypes of the pre-logging populations were used as data inputs for the Eco-gene model and post-logging genetic data was used to verify the output from the simulations. Overall, under current Brazilian forest management regulations, there were neither short nor long-term impacts on J. copaia. By contrast, D. odorata cannot be sustainably logged under current regulations, a sustainable scenario was achieved by increasing the minimum cutting diameter at breast height from 50 to 100 cm over 30-year logging cycles. Genetic parameters were only slightly affected by selective logging, with reductions in the numbers of alleles and single genotypes. In the short term, the loss of alleles seen in J. copaia simulations was the same as in real data, whereas fewer alleles were lost in D. odorata simulations than in the field. The different impacts and periods of recovery for each species support the idea that ecological and genetic information are essential at species, ecological guild or reproductive group levels to help derive sustainable management scenarios for tropical forests. PMID:24424164

Automated lithology prediction from PGNAA and other geophysical logs.

PubMed

Borsaru, M; Zhou, B; Aizawa, T; Karashima, H; Hashimoto, T

2006-02-01

Different methods of lithology predictions from geophysical data have been developed in the last 15 years. The geophysical logs used for predicting lithology are the conventional logs: sonic, neutron-neutron, gamma (total natural-gamma) and density (backscattered gamma-gamma). The prompt gamma neutron activation analysis (PGNAA) is another established geophysical logging technique for in situ element analysis of rocks in boreholes. The work described in this paper was carried out to investigate the application of PGNAA to the lithology interpretation. The data interpretation was conducted using the automatic interpretation program LogTrans based on statistical analysis. Limited test suggests that PGNAA logging data can be used to predict the lithology. A success rate of 73% for lithology prediction was achieved from PGNAA logging data only. It can also be used in conjunction with the conventional geophysical logs to enhance the lithology prediction.

Reduced density due to logging and its consequences on mating system and pollen flow in the African mahogany Entandrophragma cylindricum.

PubMed

Lourmas, M; Kjellberg, F; Dessard, H; Joly, H I; Chevallier, M-H

2007-08-01

In tropical forests, selective logging removes large trees that are often the main contributors to pollination. We studied pollination patterns of the African mahogany, Entandrophragma cylindricum (Sapelli). We investigated two plots in Cameroon corresponding to three tree densities: unlogged forest (Ndama 2002), a mildly logged forest 1 year after logging (Ndama 2003) and a severely logged forest 30 years after logging (Dimako). We used four microsatellite markers to perform paternity analysis. Selfing remained below 2% in all treatments. Pollen flow was mainly long distance but with some proximity effects. Average observed within-plot pollination distances were 338, 266 and 385 m, and pollination by trees outside the plots was 70% (Ndama 2002), 74% (Ndama 2003) and 66% (Dimako). Despite sampling a limited number of seeds from a limited number of mother trees, we obtained seeds sired by 35.6-38.3% of the potential within-plot pollen donors. While trees 20 cm in diameter contributed to pollination, results in Dimako suggest that individual larger trees contribute more to pollination than small ones. This effect was not detected in the other treatments. The results suggest extensive pollen flow in Sapelli. Hence, in Sapelli, the main limiting factor for regeneration after logging may be a reduction in the number of trees capable of producing seeds rather genetic effects due to limits to pollen dispersal.

Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study

PubMed Central

Baggett, Henry C; Watson, Nora L; Deloria Knoll, Maria; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen R C; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Duncan, Julie; Ebruke, Bernard E; Goswami, Doli; Higdon, Melissa M; Karron, Ruth A; Moore, David P; Morpeth, Susan C; Mulindwa, Justin M; Park, Daniel E; Paveenkittiporn, Wantana; Piralam, Barameht; Prosperi, Christine; Sow, Samba O; Tapia, Milagritos D; Zaman, Khalequ; Zeger, Scott L; O’Brien, Katherine L; O, K L; L, O S; K, M D; F, D R; D, A N; D, A J; Fancourt, Nicholas; Fu, Wei; H, L L; H, M M; Wangeci Kagucia, E; K, R A; Li, Mengying; P, D E; P, C; Wu, Zhenke; Z, S L; W, N L; Crawley, Jane; M, D R; B, W A; Endtz, Hubert P; Z, K; G, D; Hossain, Lokman; Jahan, Yasmin; Ashraf, Hasan; C H, S R; E, B E; A, M; McLellan, Jessica; Machuka, Eunice; Shamsul, Arifin; Zaman, Syed M A; Mackenzie, Grant; G S, J A; A, J O; M, S C; Kamau, Alice; Kazungu, Sidi; Ominde, Micah Silaba; K, K L; T, M D; S, S O; Sylla, Mamadou; Tamboura, Boubou; Onwuchekwa, Uma; Kourouma, Nana; Toure, Aliou; M, S A; M, D P; Adrian, Peter V; B, V L; Kuwanda, Locadiah; Mudau, Azwifarwi; Groome, Michelle J; Mahomed, Nasreen; B, H C; Thamthitiwat, Somsak; Maloney, Susan A; Bunthi, Charatdao; Rhodes, Julia; Sawatwong, Pongpun; Akarasewi, Pasakorn; T, D M; Mwananyanda, Lawrence; Chipeta, James; Seidenberg, Phil; Mwansa, James; wa Somwe, Somwe; Kwenda, Geoffrey; Anderson, Trevor P; Mitchell, Joanne

2017-01-01

Abstract Background Previous studies suggested an association between upper airway pneumococcal colonization density and pneumococcal pneumonia, but data in children are limited. Using data from the Pneumonia Etiology Research for Child Health (PERCH) study, we assessed this potential association. Methods PERCH is a case-control study in 7 countries: Bangladesh, The Gambia, Kenya, Mali, South Africa, Thailand, and Zambia. Cases were children aged 1–59 months hospitalized with World Health Organization–defined severe or very severe pneumonia. Controls were randomly selected from the community. Microbiologically confirmed pneumococcal pneumonia (MCPP) was confirmed by detection of pneumococcus in a relevant normally sterile body fluid. Colonization density was calculated with quantitative polymerase chain reaction analysis of nasopharyngeal/oropharyngeal specimens. Results Median colonization density among 56 cases with MCPP (MCPP cases; 17.28 × 106 copies/mL) exceeded that of cases without MCPP (non-MCPP cases; 0.75 × 106) and controls (0.60 × 106) (each P < .001). The optimal density for discriminating MCPP cases from controls using the Youden index was >6.9 log10 copies/mL; overall, the sensitivity was 64% and the specificity 92%, with variable performance by site. The threshold was lower (≥4.4 log10 copies/mL) when MCPP cases were distinguished from controls who received antibiotics before specimen collection. Among the 4035 non-MCPP cases, 500 (12%) had pneumococcal colonization density >6.9 log10 copies/mL; above this cutoff was associated with alveolar consolidation at chest radiography, very severe pneumonia, oxygen saturation <92%, C-reactive protein ≥40 mg/L, and lack of antibiotic pretreatment (all P< .001). Conclusions Pneumococcal colonization density >6.9 log10 copies/mL was strongly associated with MCPP and could be used to improve estimates of pneumococcal pneumonia prevalence in childhood pneumonia studies. Our findings do not support its use for individual diagnosis in a clinical setting. PMID:28575365

Logging damage to residual trees following partial cutting in a green ash-sugarberry stand in the Mississippi Delta

Treesearch

James S. Meadows

1993-01-01

Partial cutting in bottomland hardwoods to control stand density and species composition sometimes results in logging damage to the lower bole and/or roots of residual trees. If severe, logging damage may lead to a decline in tree vigor, which may subsequently stimulate the production of epicormic branches, causing a decrease in bole quality and an eventual loss in...

Logging Damage to Residual Trees Following Partial Cutting in a Green Ash-Sugarberry Stand in the Mississippi Delta

Treesearch

James S. Meadows

1993-01-01

Partial cutting in bottomland hardwoods to control stand density and species composition sometimes results in logging damage to the lower bole and/or roots of residual trees. If severe, logging damage may lead to a decline in tree vigor, which may subsequently stimulate the production of epicormic branches, causing a decrease in bole quality and an eventual loss in...

powerbox: Arbitrarily structured, arbitrary-dimension boxes and log-normal mocks

NASA Astrophysics Data System (ADS)

Murray, Steven G.

2018-05-01

powerbox creates density grids (or boxes) with an arbitrary two-point distribution (i.e. power spectrum). The software works in any number of dimensions, creates Gaussian or Log-Normal fields, and measures power spectra of output fields to ensure consistency. The primary motivation for creating the code was the simple creation of log-normal mock galaxy distributions, but the methodology can be used for other applications.

A DEFINITION FOR GIANT PLANETS BASED ON THE MASS–DENSITY RELATIONSHIP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hatzes, Artie P.; Rauer, Heike, E-mail: artie@tls-tautenburg.de, E-mail: Heike.Rauer@dlr.de

We present the mass–density relationship (log M − log ρ) for objects with masses ranging from planets (M ≈ 0.01 M{sub Jup}) to stars (M > 0.08 M{sub ⊙}). This relationship shows three distinct regions separated by a change in slope in the log M − log ρ plane. In particular, objects with masses in the range 0.3 M{sub Jup}–60 M{sub Jup} follow a tight linear relationship with no distinguishing feature to separate the low-mass end (giant planets) from the high-mass end (brown dwarfs). We propose a new definition of giant planets simply based on changes in the slope ofmore » the log M versus log ρ relationship. By this criterion, objects with masses less than ≈0.3 M{sub Jup} are low-mass planets, either icy or rocky. Giant planets cover the mass range 0.3 M{sub Jup}–60 M{sub Jup}. Analogous to the stellar main sequence, objects on the upper end of the giant planet sequence (brown dwarfs) can simply be referred to as “high-mass giant planets,” while planets with masses near that of Jupiter can be called “low-mass giant planets.”.« less

Interactive effects of historical logging and fire exclusion on ponderosa pine forest structure in the northern Rockies.

PubMed

Naficy, Cameron; Sala, Anna; Keeling, Eric G; Graham, Jon; DeLuca, Thomas H

2010-10-01

Increased forest density resulting from decades of fire exclusion is often perceived as the leading cause of historically aberrant, severe, contemporary wildfires and insect outbreaks documented in some fire-prone forests of the western United States. Based on this notion, current U.S. forest policy directs managers to reduce stand density and restore historical conditions in fire-excluded forests to help minimize high-severity disturbances. Historical logging, however, has also caused widespread change in forest vegetation conditions, but its long-term effects on vegetation structure and composition have never been adequately quantified. We document that fire-excluded ponderosa pine forests of the northern Rocky Mountains logged prior to 1960 have much higher average stand density, greater homogeneity of stand structure, more standing dead trees and increased abundance of fire-intolerant trees than paired fire-excluded, unlogged counterparts. Notably, the magnitude of the interactive effect of fire exclusion and historical logging substantially exceeds the effects of fire exclusion alone. These differences suggest that historically logged sites are more prone to severe wildfires and insect outbreaks than unlogged, fire-excluded forests and should be considered a high priority for fuels reduction treatments. Furthermore, we propose that ponderosa pine forests with these distinct management histories likely require distinct restoration approaches. We also highlight potential long-term risks of mechanical stand manipulation in unlogged forests and emphasize the need for a long-term view of fuels management.

Energetics and Birth Rates of Supernova Remnants in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Leahy, D. A.

2017-03-01

Published X-ray emission properties for a sample of 50 supernova remnants (SNRs) in the Large Magellanic Cloud (LMC) are used as input for SNR evolution modeling calculations. The forward shock emission is modeled to obtain the initial explosion energy, age, and circumstellar medium density for each SNR in the sample. The resulting age distribution yields a SNR birthrate of 1/(500 yr) for the LMC. The explosion energy distribution is well fit by a log-normal distribution, with a most-probable explosion energy of 0.5× {10}51 erg, with a 1σ dispersion by a factor of 3 in energy. The circumstellar medium density distribution is broader than the explosion energy distribution, with a most-probable density of ˜0.1 cm-3. The shape of the density distribution can be fit with a log-normal distribution, with incompleteness at high density caused by the shorter evolution times of SNRs.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Young, Anthony M.; Williams, Liliya L.R.; Hjorth, Jens, E-mail: amyoung@astro.umn.edu, E-mail: llrw@astro.umn.edu, E-mail: jens@dark-cosmology.dk

One usually thinks of a radial density profile as having a monotonically changing logarithmic slope, such as in NFW or Einasto profiles. However, in two different classes of commonly used systems, this is often not the case. These classes exhibit non-monotonic changes in their density profile slopes which we call oscillations for short. We analyze these two unrelated classes separately. Class 1 consists of systems that have density oscillations and that are defined through their distribution function f ( E ), or differential energy distribution N ( E ), such as isothermal spheres, King profiles, or DARKexp, a theoretically derivedmore » model for relaxed collisionless systems. Systems defined through f ( E ) or N ( E ) generally have density slope oscillations. Class 1 system oscillations can be found at small, intermediate, or large radii but we focus on a limited set of Class 1 systems that have oscillations in the central regions, usually at log( r / r {sub −2}) ∼< −2, where r {sub −2} is the largest radius where d log(ρ)/ d log( r ) = −2. We show that the shape of their N ( E ) can roughly predict the amplitude of oscillations. Class 2 systems which are a product of dynamical evolution, consist of observed and simulated galaxies and clusters, and pure dark matter halos. Oscillations in the density profile slope seem pervasive in the central regions of Class 2 systems. We argue that in these systems, slope oscillations are an indication that a system is not fully relaxed. We show that these oscillations can be reproduced by small modifications to N ( E ) of DARKexp. These affect a small fraction of systems' mass and are confined to log( r / r {sub −2}) ∼< 0. The size of these modifications serves as a potential diagnostic for quantifying how far a system is from being relaxed.« less

Relationships between population density, fine-scale genetic structure, mating system and pollen dispersal in a timber tree from African rainforests

PubMed Central

Duminil, J; Daïnou, K; Kaviriri, D K; Gillet, P; Loo, J; Doucet, J-L; Hardy, O J

2016-01-01

Owing to the reduction of population density and/or the environmental changes it induces, selective logging could affect the demography, reproductive biology and evolutionary potential of forest trees. This is particularly relevant in tropical forests where natural population densities can be low and isolated trees may be subject to outcross pollen limitation and/or produce low-quality selfed seeds that exhibit inbreeding depression. Comparing reproductive biology processes and genetic diversity of populations at different densities can provide indirect evidence of the potential impacts of logging. Here, we analysed patterns of genetic diversity, mating system and gene flow in three Central African populations of the self-compatible legume timber species Erythrophleum suaveolens with contrasting densities (0.11, 0.68 and 1.72 adults per ha). The comparison of inbreeding levels among cohorts suggests that selfing is detrimental as inbred individuals are eliminated between seedling and adult stages. Levels of genetic diversity, selfing rates (∼16%) and patterns of spatial genetic structure (Sp ∼0.006) were similar in all three populations. However, the extent of gene dispersal differed markedly among populations: the average distance of pollen dispersal increased with decreasing density (from 200 m in the high-density population to 1000 m in the low-density one). Overall, our results suggest that the reproductive biology and genetic diversity of the species are not affected by current logging practices. However, further investigations need to be conducted in low-density populations to evaluate (1) whether pollen limitation may reduce seed production and (2) the regeneration potential of the species. PMID:26696137

Calculation and evaluation of log-based physical properties in the inner accretionary prism, NanTroSEIZE Site C0002, Nankai Trough, Japan

NASA Astrophysics Data System (ADS)

Webb, S. I.; Tudge, J.; Tobin, H. J.

2013-12-01

Integrated Ocean Drilling Program (IODP) Expedition 338, the most recently completed drilling stage of the NanTroSEIZE project, targeted the Miocene inner accretionary prism off the coast of southwest Japan. NanTroSEIZE is a multi-stage project in which the main objective is to characterize, sample, and instrument the potentially seismogenic region of the Nankai Trough, an active subduction zone. Understanding the physical properties of the inner accretionary prism will aid in the characterization of the deformation that has taken place and the evolution of stress, fluid pressure, and strain over the deformational history of these sediments and rocks. This study focuses on the estimation of porosity and density from available logs to inform solid and fluid volume estimates at Site C0002 from the sea floor through the Kumano Basin into the accretionary prism. Gamma ray, resistivity, and sonic logs were acquired at Hole C0002F, to a total depth of 2005 mbsf into the inner accretionary prism. Because a density and neutron porosity tool could not be deployed, porosity and density must be estimated using a variety of largely empirical methods. In this study, we calculate estimated porosity and density from both the electrical resistivity and sonic (P-wave velocity) logs collected in Hole C0002F. However, the relationship of these physical properties to the available logs is not straightforward and can be affected by changes in fluid type, salinity, temperature, presence of fractures, and clay mineralogy. To evaluate and calibrate the relationships among these properties, we take advantage of the more extensive suite of LWD data recorded in Hole C0002A at the same drill site, including density and neutron porosity measurements. Data collected in both boreholes overlaps in the interval from 875 - 1400 mbsf in the lower Kumano Basin and across the basin-accretionary wedge boundary. Core-based physical properties are also available across this interval. Through comparison of density and porosity values in intervals where core and LWD data overlap, we calculate porosity and density values and evaluate their uncertainties, developing a best estimate given the specific lithology and pore fluid at this tectonic setting. We then propagate this calibrated estimate to the deeper portions of C0002F where core and LWD density and porosity measurements are unavailable, using the sonic and resistivity data alone.

Body fat assessed from body density and estimated from skinfold thickness in normal children and children with cystic fibrosis.

PubMed

Johnston, J L; Leong, M S; Checkland, E G; Zuberbuhler, P C; Conger, P R; Quinney, H A

1988-12-01

Body density and skinfold thickness at four sites were measured in 140 normal boys, 168 normal girls, and 6 boys and 7 girls with cystic fibrosis, all aged 8-14 y. Prediction equations for the normal boys and girls for the estimation of body-fat content from skinfold measurements were derived from linear regression of body density vs the log of the sum of the skinfold thickness. The relationship between body density and the log of the sum of the skinfold measurements differed from normal for the boys and girls with cystic fibrosis because of their high body density even though their large residual volume was corrected for. However the sum of skinfold measurements in the children with cystic fibrosis did not differ from normal. Thus body fat percent of these children with cystic fibrosis was underestimated when calculated from body density and invalid when calculated from skinfold thickness.

Coal test drilling for the DE-NA-Zin Bisti Area, San Juan County, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilson, R.W.; Jentgen, R.W.

1980-01-01

From October 1978 to June 1979, the US Geological Survey (USGS) drilled 51 test holes, and cored 9 holes, in the vicinity of the Bisti Trading Post in the southwestern part of the San Juan Basin, San Juan County, New Mexico. The drilling was done in response to expressions of interest received by the Bureau of Land Management concerning coal leasing and, in some places, badlands preservation. The object of the drilling was to determine the depth, thickness, extent, and quality of the coal in the Upper Cretaceous Fruitland Formation in northwest New Mexico. The holes were geophysically logged immediatelymore » after drilling. Resistivity spontaneous-potential, and natural gamma logs were run in all of the holes. A high-resolution density log was also run in all holes drilled before January 13, when a logging unit from the USGS in Albuquerque was available. After January 13, the holes were logged by a USGS unit from Casper, Wyoming that lacked density logging capabilities. At nine locations a second hole was drilled, about 20 ft from the first hole, down to selected coal-bearing intervals and the coal beds were cored. A detailed description of each of the cores is given on the page(s) following the logs for each hole. From these coal cores, 32 intervals were selected and submitted to the Department of Energy in Pittsburgh, Pennsylvania, for analysis.« less

Expansion of industrial logging in Central Africa.

PubMed

Laporte, Nadine T; Stabach, Jared A; Grosch, Robert; Lin, Tiffany S; Goetz, Scott J

2007-06-08

Industrial logging has become the most extensive land use in Central Africa, with more than 600,000 square kilometers (30%) of forest currently under concession. With use of a time series of satellite imagery for the period from 1976 to 2003, we measured 51,916 kilometers of new logging roads. The density of roads across the forested region was 0.03 kilometer per square kilometer, but areas of Gabon and Equatorial Guinea had values over 0.09 kilometer per square kilometer. A new frontier of logging expansion was identified within the Democratic Republic of Congo, which contains 63% of the remaining forest of the region. Tree felling and skid trails increased disturbance in selectively logged areas.

Roosevelt Hot Springs, Utah FORGE Stress Logging Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

McLennan, John

This spreadsheet consist of data and graphs from deep well 58-32 stress testing from 6900 - 7500 ft depth. Measured stress data were used to correct logging predictions of in situ stress. Stress plots shows pore pressure (measured during the injection testing), the total vertical in situ stress (determined from the density logging) and the total maximum and minimum horizontal stresses. The horizontal stresses were determined from the DSI (Dipole Sonic Imager) and corrected to match the direct measurements.

Damped and sub-damped Lyman-α absorbers in z > 4 QSOs

NASA Astrophysics Data System (ADS)

Guimarães, R.; Petitjean, P.; de Carvalho, R. R.; Djorgovski, S. G.; Noterdaeme, P.; Castro, S.; Poppe, P. C. Da R.; Aghaee, A.

2009-12-01

We present the results of a survey of damped (DLA, log~N(H i)>20.3) and sub-damped Lyman-α systems (19.5 2.55 along the lines-of-sight to 77 quasars with emission redshifts in the range 419.5 were detected of which 40 systems are damped Lyman-α systems for an absorption length of Δ X = 378. About half of the lines of sight of this homogeneous survey have never been investigated for DLAs. We study the evolution with redshift of the cosmological density of the neutral gas and find, consistent with previous studies at similar resolution, that ΩDLA, H_I decreases at z>3.5. The overall cosmological evolution of Ω_HI shows a peak around this redshift. The H i column density distribution for log N(H i)≥20.3 is fitted, consistent with previous surveys, with a single power-law of index α ˜ -1.8 ±0.25. This power-law overpredicts data at the high-end and a second, much steeper, power-law (or a gamma function) is needed. There is a flattening of the function at lower H i column densities with an index of α ˜ -1.4 for the column density range log N(H i)=19.5-21. The fraction of H i mass in sub-DLAs is of the order of 30%. The H i column density distribution does not evolve strongly from z˜ 2.5 to z˜ 4.5. The observations reported here were obtained with the W. M. Keck Observatory, which is operated by the California Association for Research in Astronomy, a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. Tables 1, 2 and Appendices are only available in electronic form at http://www.aanda.org

Four Decades of Forest Persistence, Clearance and Logging on Borneo

PubMed Central

Gaveau, David L. A.; Sloan, Sean; Molidena, Elis; Yaen, Husna; Sheil, Doug; Abram, Nicola K.; Ancrenaz, Marc; Nasi, Robert; Quinones, Marcela; Wielaard, Niels; Meijaard, Erik

2014-01-01

The native forests of Borneo have been impacted by selective logging, fire, and conversion to plantations at unprecedented scales since industrial-scale extractive industries began in the early 1970s. There is no island-wide documentation of forest clearance or logging since the 1970s. This creates an information gap for conservation planning, especially with regard to selectively logged forests that maintain high conservation potential. Analysing LANDSAT images, we estimate that 75.7% (558,060 km2) of Borneo's area (737,188 km2) was forested around 1973. Based upon a forest cover map for 2010 derived using ALOS-PALSAR and visually reviewing LANDSAT images, we estimate that the 1973 forest area had declined by 168,493 km2 (30.2%) in 2010. The highest losses were recorded in Sabah and Kalimantan with 39.5% and 30.7% of their total forest area in 1973 becoming non-forest in 2010, and the lowest in Brunei and Sarawak (8.4%, and 23.1%). We estimate that the combined area planted in industrial oil palm and timber plantations in 2010 was 75,480 km2, representing 10% of Borneo. We mapped 271,819 km of primary logging roads that were created between 1973 and 2010. The greatest density of logging roads was found in Sarawak, at 0.89 km km−2, and the lowest density in Brunei, at 0.18 km km−2. Analyzing MODIS-based tree cover maps, we estimate that logging operated within 700 m of primary logging roads. Using this distance, we estimate that 266,257 km2 of 1973 forest cover has been logged. With 389,566 km2 (52.8%) of the island remaining forested, of which 209,649 km2 remains intact. There is still hope for biodiversity conservation in Borneo. Protecting logged forests from fire and conversion to plantations is an urgent priority for reducing rates of deforestation in Borneo. PMID:25029192

Four decades of forest persistence, clearance and logging on Borneo.

PubMed

Gaveau, David L A; Sloan, Sean; Molidena, Elis; Yaen, Husna; Sheil, Doug; Abram, Nicola K; Ancrenaz, Marc; Nasi, Robert; Quinones, Marcela; Wielaard, Niels; Meijaard, Erik

2014-01-01

The native forests of Borneo have been impacted by selective logging, fire, and conversion to plantations at unprecedented scales since industrial-scale extractive industries began in the early 1970s. There is no island-wide documentation of forest clearance or logging since the 1970s. This creates an information gap for conservation planning, especially with regard to selectively logged forests that maintain high conservation potential. Analysing LANDSAT images, we estimate that 75.7% (558,060 km2) of Borneo's area (737,188 km2) was forested around 1973. Based upon a forest cover map for 2010 derived using ALOS-PALSAR and visually reviewing LANDSAT images, we estimate that the 1973 forest area had declined by 168,493 km2 (30.2%) in 2010. The highest losses were recorded in Sabah and Kalimantan with 39.5% and 30.7% of their total forest area in 1973 becoming non-forest in 2010, and the lowest in Brunei and Sarawak (8.4%, and 23.1%). We estimate that the combined area planted in industrial oil palm and timber plantations in 2010 was 75,480 km2, representing 10% of Borneo. We mapped 271,819 km of primary logging roads that were created between 1973 and 2010. The greatest density of logging roads was found in Sarawak, at 0.89 km km-2, and the lowest density in Brunei, at 0.18 km km-2. Analyzing MODIS-based tree cover maps, we estimate that logging operated within 700 m of primary logging roads. Using this distance, we estimate that 266,257 km2 of 1973 forest cover has been logged. With 389,566 km2 (52.8%) of the island remaining forested, of which 209,649 km2 remains intact. There is still hope for biodiversity conservation in Borneo. Protecting logged forests from fire and conversion to plantations is an urgent priority for reducing rates of deforestation in Borneo.

Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study.

PubMed

Baggett, Henry C; Watson, Nora L; Deloria Knoll, Maria; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen R C; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Duncan, Julie; Ebruke, Bernard E; Goswami, Doli; Higdon, Melissa M; Karron, Ruth A; Moore, David P; Morpeth, Susan C; Mulindwa, Justin M; Park, Daniel E; Paveenkittiporn, Wantana; Piralam, Barameht; Prosperi, Christine; Sow, Samba O; Tapia, Milagritos D; Zaman, Khalequ; Zeger, Scott L; O'Brien, Katherine L

2017-06-15

Previous studies suggested an association between upper airway pneumococcal colonization density and pneumococcal pneumonia, but data in children are limited. Using data from the Pneumonia Etiology Research for Child Health (PERCH) study, we assessed this potential association. PERCH is a case-control study in 7 countries: Bangladesh, The Gambia, Kenya, Mali, South Africa, Thailand, and Zambia. Cases were children aged 1-59 months hospitalized with World Health Organization-defined severe or very severe pneumonia. Controls were randomly selected from the community. Microbiologically confirmed pneumococcal pneumonia (MCPP) was confirmed by detection of pneumococcus in a relevant normally sterile body fluid. Colonization density was calculated with quantitative polymerase chain reaction analysis of nasopharyngeal/oropharyngeal specimens. Median colonization density among 56 cases with MCPP (MCPP cases; 17.28 × 106 copies/mL) exceeded that of cases without MCPP (non-MCPP cases; 0.75 × 106) and controls (0.60 × 106) (each P < .001). The optimal density for discriminating MCPP cases from controls using the Youden index was >6.9 log10 copies/mL; overall, the sensitivity was 64% and the specificity 92%, with variable performance by site. The threshold was lower (≥4.4 log10 copies/mL) when MCPP cases were distinguished from controls who received antibiotics before specimen collection. Among the 4035 non-MCPP cases, 500 (12%) had pneumococcal colonization density >6.9 log10 copies/mL; above this cutoff was associated with alveolar consolidation at chest radiography, very severe pneumonia, oxygen saturation <92%, C-reactive protein ≥40 mg/L, and lack of antibiotic pretreatment (all P< .001). Pneumococcal colonization density >6.9 log10 copies/mL was strongly associated with MCPP and could be used to improve estimates of pneumococcal pneumonia prevalence in childhood pneumonia studies. Our findings do not support its use for individual diagnosis in a clinical setting. Published by Oxford University Press for the Infectious Diseases Society of America 2017.This work is written by (a) US Government employee(s) and is in the public domain in the US.

Disturbance during logging stimulates regeneration of koa

Treesearch

Paul G. Scowcroft; Robert E. Nelson

1976-01-01

The abundance and distribution of Acacia koa regeneration after logging were studied on a 500-acre (202-ha) tract of koa forest heavily infested with Passiflora mollissima vines on the island of Hawaii. Koa seedling density was about three times greater in disturbed areas than in undisturbed ones. Most of the koa seedlings in...

A log-linear model approach to estimation of population size using the line-transect sampling method

USGS Publications Warehouse

Anderson, D.R.; Burnham, K.P.; Crain, B.R.

1978-01-01

The technique of estimating wildlife population size and density using the belt or line-transect sampling method has been used in many past projects, such as the estimation of density of waterfowl nestling sites in marshes, and is being used currently in such areas as the assessment of Pacific porpoise stocks in regions of tuna fishing activity. A mathematical framework for line-transect methodology has only emerged in the last 5 yr. In the present article, we extend this mathematical framework to a line-transect estimator based upon a log-linear model approach.

Interpretation of well logs in a carbonate aquifer

USGS Publications Warehouse

MacCary, L.M.

1978-01-01

This report describes the log analysis of the Randolph and Sabial core holes in the Edwards aquifer in Texas, with particular attention to the principles that can be applied generally to any carbonate system. The geologic and hydrologic data were obtained during the drilling of the two holes, from extensive laboratory analysis of the cores, and from numerous geophysical logs run in the two holes. Some logging methods are inherently superiors to others for the analysis of limestone and dolomite aquifers. Three such systems are the dentistry, neutron, and acoustic-velocity (sonic) logs. Most of the log analysis described here is based on the interpretation of suites of logs from these three systems. In certain instances, deeply focused resistivity logs can be used to good advantage in carbonate rock studies; this technique is used to computer the water resistivity in the Randolph core hole. The rocks penetrated by the Randolph core hole are typical of those carbonates that have undergone very little solution by recent ground-water circulation. There are few large solutional openings; the water is saline; and the rocks are dark, dolomitic, have pore space that is interparticle or intercrystalline, and contain unoxidized organic material. The total porosity of rocks in the saline zone is higher than that of rocks in the fresh-water aquifer; however, the intrinsic permeability is much less in the saline zone because there are fewer large solutional openings. The Sabinal core hole penetrates a carbonate environment that has experienced much solution by ground water during recent geologic time. The rocks have high secondary porosities controlled by sedimentary structures within the rock; the water is fresh; and the dominant rock composition is limestone. The relative percentages of limestone and dolomite, the average matrix (grain) densities of the rock mixtures , and the porosity of the rock mass can be calculated from density, neutron, and acoustic logs. With supporting data from resistivity logs, the formation water quality can be estimated, as well as the relative cementation or tortuosity of the rock. Many of these properties calculated from logs can be verified by analysis of the core available from test holes drilled in the saline and fresh water zones.

Constraining the H2 column density distribution at z ˜ 3 from composite DLA spectra

NASA Astrophysics Data System (ADS)

Balashev, S. A.; Noterdaeme, P.

2018-07-01

We present the detection of the average H2 absorption signal in the overall population of neutral gas absorption systems at z˜ 3 using composite absorption spectra built from the Sloan Digital Sky Survey-III damped Lyman α catalogue. We present a new technique to directly measure the H2 column density distribution function f_H_2(N) from the average H2 absorption signal. Assuming a power-law column density distribution, we obtain a slope β = -1.29 ± 0.06(stat) ± 0.10 (sys) and an incidence rate of strong H2 absorptions [with N(H2) ≳ 1018 cm-2] to be 4.0 ± 0.5(stat) ± 1.0 (sys) per cent in H I absorption systems with N(H I) ≥1020 cm-2. Assuming the same inflexion point where f_H_2(N) steepens as at z = 0, we estimate that the cosmological density of H2 in the column density range log N(H_2) (cm^{-2})= 18{-}22 is {˜ } 15 per cent of the total. We find one order of magnitude higher H2 incident rate in a sub-sample of extremely strong damped Lyman α absorption systems (DLAs) [log N(H I) (cm^{-2}) ≥ 21.7], which, together with the derived shape of f_H_2(N), suggests that the typical H I-H2 transition column density in DLAs is log N(H)(cm-2) ≳ 22.3 in agreement with theoretical expectations for the average (low) metallicity of DLAs at high-z.

Constraining the H2 column density distribution at z˜3 from composite DLA spectra

NASA Astrophysics Data System (ADS)

Balashev, S. A.; Noterdaeme, P.

2018-04-01

We present the detection of the average H2 absorption signal in the overall population of neutral gas absorption systems at z ˜ 3 using composite absorption spectra built from the Sloan Digital Sky Survey-III damped Lyman-α catalogue. We present a new technique to directly measure the H2 column density distribution function f_H_2(N) from the average H2 absorption signal. Assuming a power-law column density distribution, we obtain a slope β = -1.29 ± 0.06(stat) ± 0.10 (sys) and an incidence rate of strong H2 absorptions (with N(H2) ≳ 1018 cm-2) to be 4.0 ± 0.5(stat) ± 1.0 (sys) % in H I absorption systems with N(H I)≥1020 cm-2. Assuming the same inflexion point where f_H_2(N) steepens as at z = 0, we estimate that the cosmological density of H2 in the column density range log N(H_2) (cm^{-2})= 18-22 is ˜15% of the total. We find one order of magnitude higher H2 incident rate in a sub-sample of extremely strong DLAs (log N(H I) (cm^{-2}) ≥ 21.7), which, together with the the derived shape of f_H_2(N), suggests that the typical H I-H2 transition column density in DLAs is log N(H)(cm-2) ≳ 22.3 in agreement with theoretical expectations for the average (low) metallicity of DLAs at high-z.

Bulk densities of materials from selected pine-site hardwoods

Treesearch

Clyde Vidrine; George E. Woodson

1982-01-01

Bulk densities of hardwood materials from low and high density species were determined for green and air-dry conditions. Materials consisted of whole-tree chips, bark-free chips, bark as collected from three types of debarkers (ring, rosser head, and drum debarkers) sawdust, planer shavings, flakes, logging residues, baled branchwood, steel-strapped firewood, and...

Neutron and gamma (density) logging in welded tuff

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, W

This Technical Implementation Procedure (TIP) describes the field operation, and the management of data records pertaining to neutron logging and density logging in welded tuff. This procedure applies to all borehole surveys performed in support of Engineered Barrier System Field Tests (EBSFT), including the Earge Block Tests (LBT) and Initial Engineered Barrier System Field Tests (IEBSFT) - WBS 1.2.3.12.4. The purpose of this TIP is to provide guidelines so that other equally trained and qualified personnel can understand how the work is performed or how to repeat the work if needed. The work will be documented by the use ofmore » Scientific Notebooks (SNs) as discussed in 033-YMP-QP 3.4. The TIP will provide a set of guidelines which the scientists will take into account in conducting the mea- surements. The use of this TIP does not imply that this is repetitive work that does not require profes- sional judgment.« less

Deuterium Abundance Toward G191-B2B: Results from the Far Ultraviolet Spectroscopic Explorer (FUSE) Mission

NASA Technical Reports Server (NTRS)

Lemoine, M.; Vidal-Madjar, A.; Hebrard, G.; Desert, J.-M.; Ferlet, R.; LecavelierdesEtangs, A.; Howk, J. C.; Andre, M.; Blair, W. P.; Friedman, S. D.;

The design and implementation of web mining in web sites security

NASA Astrophysics Data System (ADS)

Li, Jian; Zhang, Guo-Yin; Gu, Guo-Chang; Li, Jian-Li

2003-06-01

The backdoor or information leak of Web servers can be detected by using Web Mining techniques on some abnormal Web log and Web application log data. The security of Web servers can be enhanced and the damage of illegal access can be avoided. Firstly, the system for discovering the patterns of information leakages in CGI scripts from Web log data was proposed. Secondly, those patterns for system administrators to modify their codes and enhance their Web site security were provided. The following aspects were described: one is to combine web application log with web log to extract more information, so web data mining could be used to mine web log for discovering the information that firewall and Information Detection System cannot find. Another approach is to propose an operation module of web site to enhance Web site security. In cluster server session, Density-Based Clustering technique is used to reduce resource cost and obtain better efficiency.

The (C III lambda 1909/Si III lambda 1892) ratio as a diagnostic for planetary nebulae and symbiotic stars

NASA Technical Reports Server (NTRS)

Feibelman, Walter A.; Aller, Lawrence H.

1987-01-01

Suitable IUE archival material on planetary nebulae has been examined to determine the log R /F(lambda 1909 C III)/F(lambda 1892 Si III)/ as a discriminant for distinguishing planetary nebulae from symbiotic stars and related objects. The mean value of log R for 73 galactic planetaries is 1.4, while that of extragalactic planetaries appears to be slightly lower, and that for symbiotics is 0.3. The lower value of log R for symbiotics is easily understood as a consequence of their higher densities. A plot of log R versus N-epsilon indicates that 80 percent of the planetaries fall into the range of log R between 1.2 and 1.8, but some of the 'peculiar' and bipolar nebulae fall below log R = 1.2. The corresponding N(C++)/N(Si++) ionic ratio varies over a large range.

Effect of plantation density on kraft pulp production from red pine (Pinus resinosa Ait.)

Treesearch

J.Y. Zhu; G.C. Myers

2006-01-01

Red pine (Pinus resinosa Ait.) butt logs from 38 year old research plots were used to study the effect of plantation stand density on kraft pulp production. Results indicate that plantation stand density can affect pulp yield, unrefined pulp mean fibre length, and the response of pulp fibre length to pulp refining. However, the effect of plantation stand density on...

Estimation of Reineke and Volume-Based Maximum Size-Density Lines For Shortleaf Pine

Treesearch

Thomas B. Lynch; Robert F. Wittwer; Douglas J. Stevenson

2004-01-01

Maximum size-density relationships for Reineke's stand density index as well as for a relationship based on average tree volume were fitted to data from more than a decade of annual remeasurements of plots in unthinned naturally occurring shor tleaf pine in southeaster n Oklahoma. Reineke's stand density index is based on a maximum line of the form log(N) = a...

Log sampling methods and software for stand and landscape analyses.

Treesearch

Lisa J. Bate; Torolf R. Torgersen; Michael J. Wisdom; Edward O. Garton; Shawn C. Clabough

2008-01-01

We describe methods for efficient, accurate sampling of logs at landscape and stand scales to estimate density, total length, cover, volume, and weight. Our methods focus on optimizing the sampling effort by choosing an appropriate sampling method and transect length for specific forest conditions and objectives. Sampling methods include the line-intersect method and...

Snag longevity in relation to wildfire and postfire salvage logging

Treesearch

Robin E. Russell; Victoria A. Saab; Jonathan G. Dudley; Jay J. Rotella

2006-01-01

Snags create nesting, foraging, and roosting habitat for a variety of wildlife species. Removal of snags through postfire salvage logging reduces the densities and size classes of snags remaining after wildfire. We determined important variables associated with annual persistence rates (the probability a snag remains standing from 1 year to the next) of large conifer...

Interpreting wireline measurements in coal beds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnston, D.J.

1991-06-01

When logging coal seams with wireline tools, the interpretation method needed to evaluate the coals is different from that used for conventional oil and gas reservoirs. Wireline logs identify coals easily. For an evaluation, the contribution of each coal component on the raw measurements must be considered. This paper will discuss how each log measurement is affected by each component. The components of a coal will be identified as the mineral matter, macerals, moisture content, rank, gas content, and cleat porosity. The measurements illustrated are from the resistivity, litho-density, neutron, sonic, dielectric, and geochemical tools. Once the coal component effectsmore » have been determined, an interpretation of the logs can be made. This paper will illustrate how to use these corrected logs in a coal evaluation.« less

Automated Detection of Selective Logging in Amazon Forests Using Airborne Lidar Data and Pattern Recognition Algorithms

NASA Astrophysics Data System (ADS)

Keller, M. M.; d'Oliveira, M. N.; Takemura, C. M.; Vitoria, D.; Araujo, L. S.; Morton, D. C.

2012-12-01

Selective logging, the removal of several valuable timber trees per hectare, is an important land use in the Brazilian Amazon and may degrade forests through long term changes in structure, loss of forest carbon and species diversity. Similar to deforestation, the annual area affected by selected logging has declined significantly in the past decade. Nonetheless, this land use affects several thousand km2 per year in Brazil. We studied a 1000 ha area of the Antimary State Forest (FEA) in the State of Acre, Brazil (9.304 ○S, 68.281 ○W) that has a basal area of 22.5 m2 ha-1 and an above-ground biomass of 231 Mg ha-1. Logging intensity was low, approximately 10 to 15 m3 ha-1. We collected small-footprint airborne lidar data using an Optech ALTM 3100EA over the study area once each in 2010 and 2011. The study area contained both recent and older logging that used both conventional and technologically advanced logging techniques. Lidar return density averaged over 20 m-2 for both collection periods with estimated horizontal and vertical precision of 0.30 and 0.15 m. A relative density model comparing returns from 0 to 1 m elevation to returns in 1-5 m elevation range revealed the pattern of roads and skid trails. These patterns were confirmed by ground-based GPS survey. A GIS model of the road and skid network was built using lidar and ground data. We tested and compared two pattern recognition approaches used to automate logging detection. Both segmentation using commercial eCognition segmentation and a Frangi filter algorithm identified the road and skid trail network compared to the GIS model. We report on the effectiveness of these two techniques.

Maltodextrin enhances biofilm elimination by electrochemical scaffold

PubMed Central

Sultana, Sujala T.; Call, Douglas R.; Beyenal, Haluk

2016-01-01

Electrochemical scaffolds (e-scaffolds) continuously generate low concentrations of H2O2 suitable for damaging wound biofilms without damaging host tissue. Nevertheless, retarded diffusion combined with H2O2 degradation can limit the efficacy of this potentially important clinical tool. H2O2 diffusion into biofilms and bacterial cells can be increased by damaging the biofilm structure or by activating membrane transportation channels by exposure to hyperosmotic agents. We hypothesized that e-scaffolds would be more effective against Acinetobacter baumannii and Staphylococcus aureus biofilms in the presence of a hyperosmotic agent. E-scaffolds polarized at −600 mVAg/AgCl were overlaid onto preformed biofilms in media containing various maltodextrin concentrations. E-scaffold alone decreased A. baumannii and S. aureus biofilm cell densities by (3.92 ± 0.15) log and (2.31 ± 0.12) log, respectively. Compared to untreated biofilms, the efficacy of the e-scaffold increased to a maximum (8.27 ± 0.05) log reduction in A. baumannii and (4.71 ± 0.12) log reduction in S. aureus biofilm cell densities upon 10 mM and 30 mM maltodextrin addition, respectively. Overall ~55% decrease in relative biofilm surface coverage was achieved for both species. We conclude that combined treatment with electrochemically generated H2O2 from an e-scaffold and maltodextrin is more effective in decreasing viable biofilm cell density. PMID:27782161

Generating log-normal mock catalog of galaxies in redshift space

NASA Astrophysics Data System (ADS)

Agrawal, Aniket; Makiya, Ryu; Chiang, Chi-Ting; Jeong, Donghui; Saito, Shun; Komatsu, Eiichiro

2017-10-01

We present a public code to generate a mock galaxy catalog in redshift space assuming a log-normal probability density function (PDF) of galaxy and matter density fields. We draw galaxies by Poisson-sampling the log-normal field, and calculate the velocity field from the linearised continuity equation of matter fields, assuming zero vorticity. This procedure yields a PDF of the pairwise velocity fields that is qualitatively similar to that of N-body simulations. We check fidelity of the catalog, showing that the measured two-point correlation function and power spectrum in real space agree with the input precisely. We find that a linear bias relation in the power spectrum does not guarantee a linear bias relation in the density contrasts, leading to a cross-correlation coefficient of matter and galaxies deviating from unity on small scales. We also find that linearising the Jacobian of the real-to-redshift space mapping provides a poor model for the two-point statistics in redshift space. That is, non-linear redshift-space distortion is dominated by non-linearity in the Jacobian. The power spectrum in redshift space shows a damping on small scales that is qualitatively similar to that of the well-known Fingers-of-God (FoG) effect due to random velocities, except that the log-normal mock does not include random velocities. This damping is a consequence of non-linearity in the Jacobian, and thus attributing the damping of the power spectrum solely to FoG, as commonly done in the literature, is misleading.

Age affects sleep microstructure more than sleep macrostructure.

PubMed

Schwarz, Johanna F A; Åkerstedt, Torbjörn; Lindberg, Eva; Gruber, Georg; Fischer, Håkan; Theorell-Haglöw, Jenny

2017-06-01

It is well known that the quantity and quality of physiological sleep changes across age. However, so far the effect of age on sleep microstructure has been mostly addressed in small samples. The current study examines the effect of age on several measures of sleep macro- and microstructure in 211 women (22-71 years old) of the 'Sleep and Health in Women' study for whom ambulatory polysomnography was registered. Older age was associated with significantly lower fast spindle (effect size f 2  = 0.32) and K-complex density (f 2  = 0.19) during N2 sleep, as well as slow-wave activity (log) in N3 sleep (f 2  = 0.21). Moreover, total sleep time (f 2  = 0.10), N3 sleep (min) (f 2  = 0.10), rapid eye movement sleep (min) (f 2  = 0.11) and sigma (log) (f 2  = 0.05) and slow-wave activity (log) during non-rapid eye movement sleep (f 2  = 0.09) were reduced, and N1 sleep (f 2  = 0.03) was increased in older age. No significant effects of age were observed on slow spindle density, rapid eye movement density and beta power (log) during non-rapid eye movement sleep. In conclusion, effect sizes indicate that traditional sleep stage scoring may underestimate age-related changes in sleep. © 2017 European Sleep Research Society.

Consolidation patterns during initiation and evolution of a plate-boundary decollement zone: Northern Barbados accretionary prism

USGS Publications Warehouse

Moore, J.C.; Klaus, A.; Bangs, N.L.; Bekins, B.; Bucker, C.J.; Bruckmann, W.; Erickson, S.N.; Hansen, O.; Horton, T.; Ireland, P.; Major, C.O.; Moore, Gregory F.; Peacock, S.; Saito, S.; Screaton, E.J.; Shimeld, J.W.; Stauffer, P.H.; Taymaz, T.; Teas, P.A.; Tokunaga, T.

1998-01-01

Borehole logs from the northern Barbados accretionary prism show that the plate-boundary decollement initiates in a low-density radiolarian claystone. With continued thrusting, the decollement zone consolidates, but in a patchy manner. The logs calibrate a three-dimensional seismic reflection image of the decollement zone and indicate which portions are of low density and enriched in fluid, and which portions have consolidated. The seismic image demonstrates that an underconsolidated patch of the decollement zone connects to a fluid-rich conduit extending down the decollement surface. Fluid migration up this conduit probably supports the open pore structure in the underconsolidated patch.

VizieR Online Data Catalog: CoRoT red giants abundances (Morel+, 2014)

NASA Astrophysics Data System (ADS)

Morel, T.; Miglio, A.; Lagarde, N.; Montalban, J.; Rainer, M.; Poretti, E.; Eggenberger, P.; Hekker, S.; Kallinger, T.; Mosser, B.; Valentini, M.; Carrier, F.; Hareter, M.; Mantegazza, L.

2014-02-01

The equivalent widths were measured manually assuming Gaussian profiles or Voigt profiles for the few lines with extended damping wings. Lines with an unsatisfactory fit or significantly affected by telluric features were discarded. Only values eventually retained for the analysis are provided. For the chemical abundances, the usual notation is used: [X/Y]=[log({epsilon}(X))-log({epsilon}(Y))]star - [log({epsilon}(X))-log({epsilon}(Y))]⊙ with log{epsilon}(X)=12+log[N(X)/N(H)] (N is the number density of the species). For lithium, the following notation is used: [Li/H]=log(N(Li))star-log(N(Li))⊙. The adopted solar abundances are taken from Grevesse & Sauval (1998SSRv...85..161G), except for Li for which we adopt our derived values: log({epsilon}(Li))⊙=1.09 and 1.13 in LTE and NLTE, respectively (see text). All the abundances are computed under the assumption of LTE, except Li for which values corrected for departures from LTE using the data of Lind et al. (2009A&A...503..541L) are also provided. All the quoted error bars are 1-sigma uncertainties. (6 data files).

Application of borehole geophysics to water-resources investigations

USGS Publications Warehouse

Keys, W.S.; MacCary, L.M.

1971-01-01

This manual is intended to be a guide for hydrologists using borehole geophysics in ground-water studies. The emphasis is on the application and interpretation of geophysical well logs, and not on the operation of a logger. It describes in detail those logging techniques that have been utilized within the Water Resources Division of the U.S. Geological Survey, and those used in petroleum investigations that have potential application to hydrologic problems. Most of the logs described can be made by commercial logging service companies, and many can be made with small water-well loggers. The general principles of each technique and the rules of log interpretation are the same, regardless of differences in instrumentation. Geophysical well logs can be interpreted to determine the lithology, geometry, resistivity, formation factor, bulk density, porosity, permeability, moisture content, and specific yield of water-bearing rocks, and to define the source, movement, and chemical and physical characteristics of ground water. Numerous examples of logs are used to illustrate applications and interpretation in various ground-water environments. The interrelations between various types of logs are emphasized, and the following aspects are described for each of the important logging techniques: Principles and applications, instrumentation, calibration and standardization, radius of investigation, and extraneous effects.

Spectroscopic Study of a Dark Lane and a Cool Loop in a Solar Limb Active Region by Hinode/EIS

NASA Astrophysics Data System (ADS)

Lee, K.; Imada, S.; Moon, Y.; Lee, J.

2012-12-01

We investigate a cool loop and a dark lane over a limb active region on 2007 March 14 by the Hinode/EUV Imaging Spectrometer (EIS). The cool loop is clearly seen in the EIS spectral lines formed at the transition region temperature (log T = 5.8). The dark lane is characterized by an elongated faint structure in coronal spectral lines (log T = 5.8 - 6.1) and rooted on a bright point. We examine their electron densities, Doppler velocities, and non-thermal velocities as a function of distance from the limb using the spectral lines formed at different temperatures (log T = 5.4 - 6.4). The electron densities of the cool loop and the dark lane are derived from the density sensitive line pairs of Mg VII, Fe XII, and Fe XIV spectra. Under the hydrostatic equilibrium and isothermal assumption, we determine their temperatures from the density scale height. Comparing the scale height temperatures to the peak formation temperatures of the spectral lines, we note that the scale height temperature of the cool loop is consistent with a peak formation temperature of the Mg VII (log T = 5.8) and the scale height temperature of the dark lane is close to a peak formation temperature of the Fe XII and Fe XIII (log T = 6.1 - 6.2). It is interesting to note that the structures of the cool loop and the dark lane are most visible in these temperature lines. While the non-thermal velocity in the cool loop slightly decreases (less than 7 km {s-1}) along the loop, that in the dark lane sharply falls off with height. The variation of non-thermal velocity with height in the cool loop and the dark lane is contrast to that in off-limb polar coronal holes which are considered as source of the fast solar wind. Such a decrease in the non-thermal velocity may be explained by wave damping near the solar surface or turbulence due to magnetic reconnection near the bright point.

Measuring firm size distribution with semi-nonparametric densities

NASA Astrophysics Data System (ADS)

Cortés, Lina M.; Mora-Valencia, Andrés; Perote, Javier

2017-11-01

In this article, we propose a new methodology based on a (log) semi-nonparametric (log-SNP) distribution that nests the lognormal and enables better fits in the upper tail of the distribution through the introduction of new parameters. We test the performance of the lognormal and log-SNP distributions capturing firm size, measured through a sample of US firms in 2004-2015. Taking different levels of aggregation by type of economic activity, our study shows that the log-SNP provides a better fit of the firm size distribution. We also formally introduce the multivariate log-SNP distribution, which encompasses the multivariate lognormal, to analyze the estimation of the joint distribution of the value of the firm's assets and sales. The results suggest that sales are a better firm size measure, as indicated by other studies in the literature.

Data for four geologic test holes in the Sacramento Valley, California

USGS Publications Warehouse

Berkstresser, C.F.; French, J.J.; Schaal, M.E.

1985-01-01

The report provides geological and geophysical data for four of seven test holes drilled as a part of the Central Valley Aquifer Project, which is part of the Regional Aquifer Systems Analysis. The holes were drilled with a rotary well drilling machine to depths of 900 feet in the southwestern part of the Sacramento Valley in Solano and Yolo Counties. Geologic data for each well include lithology, texture, color, character of the contact, sorting, rounding, and cementation, determined from cuttings, cores, and sidewall covers. Fifty cores, 3 feet long, were obtained from each hole, and from eight to fourteen sidewall cores were collected. Geophysical data include a dual-induction log, spherically focused log (SFL), compensated neutron-formation density log, gamma-ray log, and a caliper log. These data are presented in four tables and on four plates. (USGS)

Rapid estimation of aquifer salinity structure from oil and gas geophysical logs

NASA Astrophysics Data System (ADS)

Shimabukuro, D.; Stephens, M.; Ducart, A.; Skinner, S. M.

2016-12-01

We describe a workflow for creating aquifer salinity maps using Archie's equation for areas that have geophysical data from oil and gas wells. We apply this method in California, where geophysical logs are available in raster format from the Division of Oil, Gas, and Geothermal Resource (DOGGR) online archive. This method should be applicable to any region where geophysical logs are readily available. Much of the work is controlled by computer code, allowing salinity estimates for new areas to be rapidly generated. For a region of interest, the DOGGR online database is scraped for wells that were logged with multi-tool suites, such as the Platform Express or Triple Combination Logging Tools. Then, well construction metadata, such as measured depth, spud date, and well orientation, is attached. The resultant local database allows a weighted criteria selection of wells that are most likely to have the shallow resistivity, deep resistivity, and density porosity measurements necessary to calculate salinity over the longest depth interval. The algorithm can be adjusted for geophysical log availability for older well fields and density of sampling. Once priority wells are identified, a student researcher team uses Neuralog software to digitize the raster geophysical logs. Total dissolved solid (TDS) concentration is then calculated in clean, wet sand intervals using the resistivity-porosity method, a modified form of Archie's equation. These sand intervals are automatically selected using a combination of spontaneous potential and the difference in shallow resistivity and deep resistivity measurements. Gamma ray logs are not used because arkosic sands common in California make it difficult to distinguish sand and shale. Computer calculation allows easy adjustment of Archie's parameters. The result is a semi-continuous TDS profile for the wells of interest. These profiles are combined and contoured using standard 3-d visualization software to yield preliminary salinity maps for the region of interest. We present results for select well fields in the Southern San Joaquin Valley, California.

Physiological and morphological responses of pine and willow saplings to post-fire salvage logging

NASA Astrophysics Data System (ADS)

Millions, E. L.; Letts, M. G.; Harvey, T.; Rood, S. B.

2015-12-01

With global warming, forest fires may be increasing in frequency, and post-fire salvage logging may become more common. The ecophysiological impacts of this practice on tree saplings remain poorly understood. In this study, we examined the physiological and morphological impacts of increased light intensity, due to post-fire salvage logging, on the conifer Pinus contorta (pine) and deciduous broadleaf Salix lucida (willow) tree and shrub species in the Crowsnest Pass region of southern Alberta. Photosynthetic gas-exchange and plant morphological measurements were taken throughout the summer of 2013 on approximately ten year-old saplings of both species. Neither species exhibited photoinhibition, but different strategies were observed to acclimate to increased light availability. Willow saplings were able to slightly elevate their light-saturated rate of net photosynthesis (Amax) when exposed to higher photosynthetic photon flux density (PPFD), thus increasing their growth rate. Willow also exhibited increased leaf inclination angles and leaf mass per unit area (LMA), to decrease light interception in the salvage-logged plot. By contrast, pine, which exhibited lower Amax and transpiration (E), but higher water-use efficiency (WUE = Amax/E) than willow, increased the rate at which electrons were moved through and away from the photosynthetic apparatus in order to avoid photoinhibition. Acclimation indices were higher in willow saplings, consistent with the hypothesis that species with short-lived foliage exhibit greater acclimation. LMA was higher in pine saplings growing in the logged plot, but whole-plant and branch-level morphological acclimation was limited and more consistent with a response to decreased competition in the logged plot, which had much lower stand density.

Calculation of thermal conductivity, thermal diffusivity and specific heat capacity of sedimentary rocks using petrophysical well logs

NASA Astrophysics Data System (ADS)

Fuchs, Sven; Balling, Niels; Förster, Andrea

2015-12-01

In this study, equations are developed that predict for synthetic sedimentary rocks (clastics, carbonates and evapourates) thermal properties comprising thermal conductivity, specific heat capacity and thermal diffusivity. The rock groups are composed of mineral assemblages with variable contents of 15 major rock-forming minerals and porosities of 0-30 per cent. Petrophysical properties and their well-logging-tool-characteristic readings were assigned to these rock-forming minerals and to pore-filling fluids. Relationships are explored between each thermal property and other petrophysical properties (density, sonic interval transit time, hydrogen index, volume fraction of shale and photoelectric absorption index) using multivariate statistics. The application of these relations allows computing continuous borehole profiles for each rock thermal property. The uncertainties in the prediction of each property vary depending on the selected well-log combination. Best prediction is in the range of 2-8 per cent for the specific heat capacity, of 5-10 per cent for the thermal conductivity, and of 8-15 for the thermal diffusivity, respectively. Well-log derived thermal conductivity is validated by laboratory data measured on cores from deep boreholes of the Danish Basin, the North German Basin, and the Molasse Basin. Additional validation of thermal conductivity was performed by comparing predicted and measured temperature logs. The maximum deviation between these logs is <3 °C. The thermal-conductivity calculation allowed an evaluation of the depth range in which the palaeoclimatic effect on the subsurface temperature field can be observed in the North German Basin. This effect reduces the surface heat-flow density by 25 mW m-2.

Comparison of polymer induced and solvent induced trypsin denaturation: the role of hydrophobicity.

PubMed

Jasti, Lakshmi S; Fadnavis, Nitin W; Addepally, Uma; Daniels, Siona; Deokar, Sarika; Ponrathnam, Surendra

2014-04-01

Trypsin adsorption from aqueous buffer by various copolymers of allyl glycidyl ether-ethylene glycol dimethacrylate (AGE-EGDM) copolymer with varying crosslink density increases with increasing crosslink density and the effect slowly wears off after reaching a plateau at 50% crosslink density. The copolymer with 25% crosslink density was reacted with different amines with alkyl/aryl side chains to obtain a series of copolymers with 1,2-amino alcohol functional groups and varying hydrophobicity. Trypsin binding capacity again increases with hydrophobicity of the reacting amine and a good correlation between logPoctanol of the amine and protein binding is observed. The bound trypsin is denatured to the extent of 90% in spite of the presence of hydrophilic hydroxyl and amino groups. The behavior was comparable to that in mixtures of aqueous buffer and water-miscible organic co-solvents where the solvent concentration required to deactivate 50% of the enzyme (C50) is dependent on logPoctanol of the co-solvent. Copyright © 2014 Elsevier B.V. All rights reserved.

Automatic Quantification of X-ray Computed Tomography Images of Cores: Method and Application to Shimokita Cores (Northeast Coast of Honshu, Japan)

NASA Astrophysics Data System (ADS)

Gaillot, P.

2007-12-01

X-ray computed tomography (CT) of rock core provides nondestructive cross-sectional or three-dimensional core representations from the attenuation of electromagnetic radiation. Attenuation depends on the density and the atomic constituents of the rock material that is scanned. Since it has the potential to non-invasively measure phase distribution and species concentration, X-ray CT offers significant advantages to characterize both heterogeneous and apparently homogeneous lithologies. In particular, once empirically calibrated into 3D density images, this scanning technique is useful in the observation of density variation. In this paper, I present a procedure from which information contained in the 3D images can be quantitatively extracted and turned into very-high resolution core logs and core image logs including (1) the radial and angular distributions of density values, (2) the histogram of distribution of the density and its related statistical parameters (average, 10- 25- 50, 75 and 90 percentiles, and width at half maximum), and (3) the volume, the average density and the mass contribution of three core fractions defined by two user-defined density thresholds (voids and vugs < 1.01 g/cc ≤ damaged core material < 1.25 g/cc < non-damaged core material). In turn, these quantitative outputs (1) allow the recognition of bedding and sedimentary features, as well as natural and coring-induced fractures, (2) provide a high-resolution bulk density core log, and (3) provide quantitative estimates of core voids and core damaged zones that can further be used to characterize core quality and core disturbance, and apply, where appropriate, volume correction on core physical properties (gamma-ray attenuation density, magnetic susceptibility, natural gamma radiation, non-contact electrical resistivity, P-wave velocity) acquired via Multi- Sensors Core loggers (MSCL). The procedure is illustrated on core data (XR-CT images, continuous MSCL physical properties and discrete Moisture and Density measurements) from the Hole C9001C drilled off-shore Shimokita (northeast coast of Honshu, Japan) during the shake-down cruise (08-11/2006) of the scientific drilling vessel, Chikyu.

Geologic cross section E-E' through the Appalachian basin from the Findlay arch, Wood County, Ohio, to the Valley and Ridge province, Pendleton County, West Virginia: Chapter E.4.2 in Coal and petroleum resources in the Appalachian basin: distribution, geologic framework, and geochemical character

USGS Publications Warehouse

Ryder, Robert T.; Swezey, Christopher S.; Crangle, Robert D.; Trippi, Michael H.; Ruppert, Leslie F.; Ryder, Robert T.

2014-01-01

This chapter is a re-release of U.S. Geological Survey Scientific Investigations Map 2985, of the same title, by Ryder and others (2008). For this chapter, two appendixes have been added that do not appear with the original version. Appendix A provides Log ASCII Standard (LAS) files for each drill hole along cross-section E–E'; they are text files which encode gamma-ray, neutron, density, and other logs that can be used by most well-logging software. Appendix B provides graphic well-log traces from each drill hole.

Nest densities of cavity-nesting birds in relation to postfire salvage logging and time since wildfire

Treesearch

Victoria A. Saab; Robin E. Russell; Jonathan G. Dudley

2007-01-01

We monitored the nest densities and nest survival of seven cavity-nesting bird species, including four open-space foragers (American Kestrel [Falco sparverius], Lewis's Woodpecker [Melanerpes lewis], Western Bluebird [Sialia mexicana], and Mountain Bluebird [S. currucoides]) and three wood...

The emergence of different tail exponents in the distributions of firm size variables

NASA Astrophysics Data System (ADS)

Ishikawa, Atushi; Fujimoto, Shouji; Watanabe, Tsutomu; Mizuno, Takayuki

2013-05-01

We discuss a mechanism through which inversion symmetry (i.e., invariance of a joint probability density function under the exchange of variables) and Gibrat’s law generate power-law distributions with different tail exponents. Using a dataset of firm size variables, that is, tangible fixed assets K, the number of workers L, and sales Y, we confirm that these variables have power-law tails with different exponents, and that inversion symmetry and Gibrat’s law hold. Based on these findings, we argue that there exists a plane in the three dimensional space (logK,logL,logY), with respect to which the joint probability density function for the three variables is invariant under the exchange of variables. We provide empirical evidence suggesting that this plane fits the data well, and argue that the plane can be interpreted as the Cobb-Douglas production function, which has been extensively used in various areas of economics since it was first introduced almost a century ago.

Predicting Stability Constants for Uranyl Complexes Using Density Functional Theory

DOE PAGES

Vukovic, Sinisa; Hay, Benjamin P.; Bryantsev, Vyacheslav S.

2015-04-02

The ability to predict the equilibrium constants for the formation of 1:1 uranyl:ligand complexes (log K 1 values) provides the essential foundation for the rational design of ligands with enhanced uranyl affinity and selectivity. We also use density functional theory (B3LYP) and the IEFPCM continuum solvation model to compute aqueous stability constants for UO 2 2+ complexes with 18 donor ligands. Theoretical calculations permit reasonably good estimates of relative binding strengths, while the absolute log K 1 values are significantly overestimated. Accurate predictions of the absolute log K 1 values (root mean square deviation from experiment < 1.0 for logmore » K 1 values ranging from 0 to 16.8) can be obtained by fitting the experimental data for two groups of mono and divalent negative oxygen donor ligands. The utility of correlations is demonstrated for amidoxime and imide dioxime ligands, providing a useful means of screening for new ligands with strong chelate capability to uranyl.« less

Comparative analysis of growth-phase-dependent gene expression in virulent and avirulent Streptococcus pneumoniae using a high-density DNA microarray.

PubMed

Ko, Kwan Soo; Park, Sulhee; Oh, Won Sup; Suh, Ji-Yoeun; Oh, Taejeong; Ahn, Sungwhan; Chun, Jongsik; Song, Jae-Hoon

2006-02-28

The global pattern of growth-dependent gene expres-sion in Streptococcus pneumoniae strains was evalu-ated using a high-density DNA microarray. Total RNAs obtained from an avirulent S. pneumoniae strain R6 and a virulent strain AMC96-6 were used to compare the expression patterns at seven time points (2.5, 3.5, 4.5, 5.5, 6.0, 6.5, and 8.0 h). The expression profile of strain R6 changed between log and station-ary growth (the Log-Stat switch). There were clear differences between the growth-dependent gene ex-pression profiles of the virulent and avirulent pneumo-coccal strains in 367 of 1,112 genes. Transcripts of genes associated with bacterial competence and capsular polysaccharide formation, as well as clpP and cbpA, were higher in the virulent strain. Our data suggest that late log or early stationary phase may be the most virulent phase of S. pneumoniae.

Thorium normalization as a hydrocarbon accumulation indicator for Lower Miocene rocks in Ras Ghara area, Gulf of Suez, Egypt

NASA Astrophysics Data System (ADS)

El-Khadragy, A. A.; Shazly, T. F.; AlAlfy, I. M.; Ramadan, M.; El-Sawy, M. Z.

2018-06-01

An exploration method has been developed using surface and aerial gamma-ray spectral measurements in prospecting petroleum in stratigraphic and structural traps. The Gulf of Suez is an important region for studying hydrocarbon potentiality in Egypt. Thorium normalization technique was applied on the sandstone reservoirs in the region to determine the hydrocarbon potentialities zones using the three spectrometric radioactive gamma ray-logs (eU, eTh and K% logs). This method was applied on the recorded gamma-ray spectrometric logs for Rudeis and Kareem Formations in Ras Ghara oil Field, Gulf of Suez, Egypt. The conventional well logs (gamma-ray, resistivity, neutron, density and sonic logs) were analyzed to determine the net pay zones in the study area. The agreement ratios between the thorium normalization technique and the results of the well log analyses are high, so the application of thorium normalization technique can be used as a guide for hydrocarbon accumulation in the study reservoir rocks.

Necromass in undisturbed and logged forests in the Brazilian Amazon.

Treesearch

Michael Palace; Michael Keller; Gregory P. Asner; Jose Natalino M. Silva; Carlos Passos

2007-01-01

Necromass is an important stock of carbon in tropical forests. We estimated volume, density, and mass of fallen and standing necromass in undisturbed and selectively logged forests at Juruena, Mato Grosso, Brazil (10.488S, 58.478W). We also measured standing dead trees at the Tapajos National Forest, Para, Brazil (3.088S, 54.948W) complementing our earlier study there...

Fallon, Nevada FORGE Lithology Logs and Well 21-31 Drilling Data

DOE Data Explorer

Blankenship, Doug; Hinz, Nicholas; Faulds, James

2018-03-11

This submission includes lithology logs for all Fallon FORGE area wells; determined from core, cuttings, and thin section. Wells included are 84-31, 21-31, 82-36, FOH-3D, 62-36, 18-5, 88-24, 86-25, FOH-2, 14-36, 17-16, 34-33, 35A-11, 51A-20, 62-15, 72-7, 86-15, Carson_Strat_1_36-32, and several others. Lithology logs last updated 3/13/2018 with confirmation well 21-31 data, and revisited existing wells. Also included is well logging data for Fallon FORGE 21-31. Well logging data includes daily reports, well logs (drill rate, lithology, fractures, mud losses, minerals, temperature, gases, and descriptions), mud reports, drilling parameter plots, daily mud loss summaries, survey reports, progress reports, plan view maps (easting, northing), and wireline logs (caliper [with GR], triple combo [GR, caliper, SP, resistivity, array induction, density, photoelectric factor, and neutron porosity], array induction with linear correlation [GR, SP, Array Induction, caliper, conductivity], and monopole compression dipole shear [GR, SP, Caliper, sonic porosity, delta-T compressional, and delta-T shear])

A photoionization instability in the early intergalactic medium

NASA Technical Reports Server (NTRS)

Hogan, Craig J.

1992-01-01

It is argued that any fairly uniform source of ionizing photons can be the cause of an instability in the pregalactic medium on scales larger than a photon path length. Underdense regions receive more ionizing energy per atom and reach higher temperature and entropy, driving the density down still further. Fluctuations created by this instability can lead to the formation of structures resembling protogalaxies and intergalactic clouds, obviating the need for gas clouds or density perturbations of earlier cosmological provenance, as is usually assumed in theories of galaxy and structure formation. Characteristic masses for clouds produced by the instability, with log mass in solar units plotted against log radius in kpc, are illustrated.

Spectral density measurements of gyro noise

NASA Technical Reports Server (NTRS)

Truncale, A.; Koenigsberg, W.; Harris, R.

1972-01-01

Power spectral density (PSD) was used to analyze the outputs of several gyros in the frequency range from 0.01 to 200 Hz. Data were accumulated on eight inertial quality instruments. The results are described in terms of input angle noise (arcsec 2/Hz) and are presented on log-log plots of PSD. These data show that the standard deviation of measurement noise was 0.01 arcsec or less for some gyros in the passband from 1 Hz down 10 0.01 Hz and probably down to 0.001 Hz for at least one gyro. For the passband between 1 and 100 Hz, uncertainties in the 0.01 and 0.05 arcsec region were observed.

Generating log-normal mock catalog of galaxies in redshift space

DOE Office of Scientific and Technical Information (OSTI.GOV)

Agrawal, Aniket; Makiya, Ryu; Saito, Shun

We present a public code to generate a mock galaxy catalog in redshift space assuming a log-normal probability density function (PDF) of galaxy and matter density fields. We draw galaxies by Poisson-sampling the log-normal field, and calculate the velocity field from the linearised continuity equation of matter fields, assuming zero vorticity. This procedure yields a PDF of the pairwise velocity fields that is qualitatively similar to that of N-body simulations. We check fidelity of the catalog, showing that the measured two-point correlation function and power spectrum in real space agree with the input precisely. We find that a linear biasmore » relation in the power spectrum does not guarantee a linear bias relation in the density contrasts, leading to a cross-correlation coefficient of matter and galaxies deviating from unity on small scales. We also find that linearising the Jacobian of the real-to-redshift space mapping provides a poor model for the two-point statistics in redshift space. That is, non-linear redshift-space distortion is dominated by non-linearity in the Jacobian. The power spectrum in redshift space shows a damping on small scales that is qualitatively similar to that of the well-known Fingers-of-God (FoG) effect due to random velocities, except that the log-normal mock does not include random velocities. This damping is a consequence of non-linearity in the Jacobian, and thus attributing the damping of the power spectrum solely to FoG, as commonly done in the literature, is misleading.« less

The specific purpose Monte Carlo code McENL for simulating the response of epithermal neutron lifetime well logging tools

NASA Astrophysics Data System (ADS)

Prettyman, T. H.; Gardner, R. P.; Verghese, K.

1993-08-01

A new specific purpose Monte Carlo code called McENL for modeling the time response of epithermal neutron lifetime tools is described. The weight windows technique, employing splitting and Russian roulette, is used with an automated importance function based on the solution of an adjoint diffusion model to improve the code efficiency. Complete composition and density correlated sampling is also included in the code, and can be used to study the effect on tool response of small variations in the formation, borehole, or logging tool composition and density. An illustration of the latter application is given for the density of a thermal neutron filter. McENL was benchmarked against test-pit data for the Mobil pulsed neutron porosity tool and was found to be very accurate. Results of the experimental validation and details of code performance are presented.

Stand and tree characteristics influencing density of fir engraver beetle attack scars in white fir

Treesearch

George T. Ferrell

1973-01-01

Density of embedded scars resulting from old fir engraver (Scolytus ventralis Lec.) attacks was assessed in 3,430 bole cross sections cut from 603 white firs growing in both cutover and in virgin old-growth stands in northern California. Mean scar density was directly related to percentage of mature stand removed by logging and was higher in...

Deuterium and Oxygen Toward Feige 110: Results from the Far Ultraviolet Spectroscopic Explorer (FUSE) Mission

NASA Technical Reports Server (NTRS)

Friedman, S. D.; Howk, J. C.; Chayer, P.; Tripp, T. M.; Hebrard, G.; Andre, M.; Oliveira, C.; Jenkins, E. B.; Moos, H. W.; Oegerle, William R.

2001-01-01

We present measurements of the column densities of interstellar D I and O I made with the Far Ultraviolet Spectroscopic Explorer (FUSE), and of H I made with the International Ultraviolet Explorer (IUE) toward the sdOB star Feige 110 [(l,b) = (74.09 deg., - 59.07 deg.); d = 179(sup +265, sub -67) pc; Z = -154(sup +57, Sub -227 pc). Our determination of the D I column density made use of curve of growth fitting and profile fitting analyses, while our O I column density determination used only curve of growth techniques. The H I column density was estimated by fitting the damping wings of the interstellar Ly(lpha) profile. We find log N(D I) = 15.47 +/- 0.06, log N(O I) = 16.73 +/- 0.10, and log N(H I) = 20.14(sup +0.13, sub -0.20) (all errors 2(sigma)). This implies D/H = (2.14 +/- 0.82) x 10(esp -5), D/O = (5.50(sup + 1.64, sub -133)) x 10(exp -2), and O/H = (3.89 +/- 1.67) x 10(exp -4). Taken with the FUSE results reported in companion papers and previous measurements of the local interstellar medium, this suggests the possibility of spatial variability in D/H for sight lines exceeding approx. 100 pc. This result may constrain models which characterize the mixing time and length scales of material in the local interstellar medium.

Application of Fracture Distribution Prediction Model in Xihu Depression of East China Sea

NASA Astrophysics Data System (ADS)

Yan, Weifeng; Duan, Feifei; Zhang, Le; Li, Ming

2018-02-01

There are different responses on each of logging data with the changes of formation characteristics and outliers caused by the existence of fractures. For this reason, the development of fractures in formation can be characterized by the fine analysis of logging curves. The well logs such as resistivity, sonic transit time, density, neutron porosity and gamma ray, which are classified as conventional well logs, are more sensitive to formation fractures. In view of traditional fracture prediction model, using the simple weighted average of different logging data to calculate the comprehensive fracture index, are more susceptible to subjective factors and exist a large deviation, a statistical method is introduced accordingly. Combining with responses of conventional logging data on the development of formation fracture, a prediction model based on membership function is established, and its essence is to analyse logging data with fuzzy mathematics theory. The fracture prediction results in a well formation in NX block of Xihu depression through two models are compared with that of imaging logging, which shows that the accuracy of fracture prediction model based on membership function is better than that of traditional model. Furthermore, the prediction results are highly consistent with imaging logs and can reflect the development of cracks much better. It can provide a reference for engineering practice.

Feeding and Feedback in the Powerful Radio Galaxy 3C 120

NASA Technical Reports Server (NTRS)

Tombesi, F.; Mushotzky, R. F.; Reynolds, C. S.; Kallman, T.; Reeves, J. N.; Braito, V.; Ueda, Y.; Leutenegger, M. A.; Williams, B. J.; Stawarz, L.;

Log-Normal Distribution of Cosmic Voids in Simulations and Mocks

NASA Astrophysics Data System (ADS)

Russell, E.; Pycke, J.-R.

2017-01-01

Following up on previous studies, we complete here a full analysis of the void size distributions of the Cosmic Void Catalog based on three different simulation and mock catalogs: dark matter (DM), haloes, and galaxies. Based on this analysis, we attempt to answer two questions: Is a three-parameter log-normal distribution a good candidate to satisfy the void size distributions obtained from different types of environments? Is there a direct relation between the shape parameters of the void size distribution and the environmental effects? In an attempt to answer these questions, we find here that all void size distributions of these data samples satisfy the three-parameter log-normal distribution whether the environment is dominated by DM, haloes, or galaxies. In addition, the shape parameters of the three-parameter log-normal void size distribution seem highly affected by environment, particularly existing substructures. Therefore, we show two quantitative relations given by linear equations between the skewness and the maximum tree depth, and between the variance of the void size distribution and the maximum tree depth, directly from the simulated data. In addition to this, we find that the percentage of voids with nonzero central density in the data sets has a critical importance. If the number of voids with nonzero central density reaches ≥3.84% in a simulation/mock sample, then a second population is observed in the void size distributions. This second population emerges as a second peak in the log-normal void size distribution at larger radius.

Comparative analysis of background EEG activity in childhood absence epilepsy during valproate treatment: a standardized, low-resolution, brain electromagnetic tomography (sLORETA) study.

PubMed

Shin, Jung-Hyun; Eom, Tae-Hoon; Kim, Young-Hoon; Chung, Seung-Yun; Lee, In-Goo; Kim, Jung-Min

2017-07-01

Valproate (VPA) is an antiepileptic drug (AED) used for initial monotherapy in treating childhood absence epilepsy (CAE). EEG might be an alternative approach to explore the effects of AEDs on the central nervous system. We performed a comparative analysis of background EEG activity during VPA treatment by using standardized, low-resolution, brain electromagnetic tomography (sLORETA) to explore the effect of VPA in patients with CAE. In 17 children with CAE, non-parametric statistical analyses using sLORETA were performed to compare the current density distribution of four frequency bands (delta, theta, alpha, and beta) between the untreated and treated condition. Maximum differences in current density were found in the left inferior frontal gyrus for the delta frequency band (log-F-ratio = -1.390, P > 0.05), the left medial frontal gyrus for the theta frequency band (log-F-ratio = -0.940, P > 0.05), the left inferior frontal gyrus for the alpha frequency band (log-F-ratio = -0.590, P > 0.05), and the left anterior cingulate for the beta frequency band (log-F-ratio = -1.318, P > 0.05). However, none of these differences were significant (threshold log-F-ratio = ±1.888, P < 0.01; threshold log-F-ratio = ±1.722, P < 0.05). Because EEG background is accepted as normal in CAE, VPA would not be expected to significantly change abnormal thalamocortical oscillations on a normal EEG background. Therefore, our results agree with currently accepted concepts but are not consistent with findings in some previous studies.

THE CHANDRA COSMOS-LEGACY SURVEY: THE z > 3 SAMPLE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marchesi, S.; Civano, F.; Urry, C. M.

2016-08-20

We present the largest high-redshift (3 < z < 6.85) sample of X-ray-selected active galactic nuclei (AGNs) on a contiguous field, using sources detected in the Chandra COSMOS-Legacy survey. The sample contains 174 sources, 87 with spectroscopic redshift and the other 87 with photometric redshift (z {sub phot}). In this work, we treat z {sub phot} as a probability-weighted sum of contributions, adding to our sample the contribution of sources with z {sub phot} < 3 but z {sub phot} probability distribution >0 at z > 3. We compute the number counts in the observed 0.5–2 keV band, finding amore » decline in the number of sources at z > 3 and constraining phenomenological models of the X-ray background. We compute the AGN space density at z > 3 in two different luminosity bins. At higher luminosities (log L (2–10 keV) > 44.1 erg s{sup −1}), the space density declines exponentially, dropping by a factor of ∼20 from z ∼ 3 to z ∼ 6. The observed decline is ∼80% steeper at lower luminosities (43.55 erg s{sup −1} < logL(2–10 keV) < 44.1 erg s{sup −1}) from z ∼ 3 to z ∼ 4.5. We study the space density evolution dividing our sample into optically classified Type 1 and Type 2 AGNs. At log L (2–10 keV) > 44.1 erg s{sup −1}, unobscured and obscured objects may have different evolution with redshift, with the obscured component being three times higher at z ∼ 5. Finally, we compare our space density with predictions of quasar activation merger models, whose calibration is based on optically luminous AGNs. These models significantly overpredict the number of expected AGNs at log L (2–10 keV) > 44.1 erg s{sup −1} with respect to our data.« less

Distinguishing oil and water layers in a cracked porous medium using pulsed neutron logging data based on Hudson's crack theory

NASA Astrophysics Data System (ADS)

Zhang, Xueang; Yang, Zhichao; Tang, Bin; Wang, Renbo; Wei, Xiong

2018-05-01

During geophysical surveys, water layers may interfere with the detection of oil layers. In order to distinguish between oil and water layers in porous cracked media, research on the properties of the cracks, the oil and water layers, and their relation to pulsed neutron logging characteristics is essential. Using Hudson's crack theory, we simulated oil and water layers in a cracked porous medium with different crack parameters corresponding to the well log responses. We found that, in a cracked medium with medium-angle (40°-50°) cracks, the thermal neutron count peak value is higher and more sensitive than those in low-angle and high-angle crack environments; in addition, the thermal neutron density distribution shows more minimum values than in other cases. Further, the thermal neutron count and the rate of change for the oil layer are greater than those of the water layer, and the time spectrum count peak value for the water layer in middle-high-angle (40°-70°) cracked environments is higher than that of the oil layer. The thermal neutron density distribution sensitivity is higher in the water layer with a range of small crack angles (0°-30°) than in the oil layer with the same range of angles. In comparing the thermal neutron density distribution, thermal neutron count peak, thermal neutron density distribution sensitivity, and time spectrum maximum in the oil and water layers, we find that neutrons in medium-angle (40°-50°) cracked reservoirs are more sensitive to deceleration and absorption than those in water layers; neutrons in approximately horizontal (0°-30°) cracked water layers are more sensitive to deceleration than those in reservoirs. These results can guide future work in the cracked media neutron logging field.

Correlating Petrophysical Well Logs Using Fractal-based Analysis to Identify Changes in the Signal Complexity Across Neutron, Density, Dipole Sonic, and Gamma Ray Tool Types

NASA Astrophysics Data System (ADS)

Matthews, L.; Gurrola, H.

2015-12-01

Typical petrophysical well log correlation is accomplished by manual pattern recognition leading to subjective correlations. The change in character in a well log is dependent upon the change in the response of the tool to lithology. The petrophysical interpreter looks for a change in one log type that would correspond to the way a different tool responds to the same lithology. To develop an objective way to pick changes in well log characteristics, we adapt a method of first arrival picking used in seismic data to analyze changes in the character of well logs. We chose to use the fractal method developed by Boschetti et al[1] (1996). This method worked better than we expected and we found similar changes in the fractal dimension across very different tool types (sonic vs density vs gamma ray). We reason the fractal response of the log is not dependent on the physics of the tool response but rather the change in the complexity of the log data. When a formation changes physical character in time or space the recorded magnitude in tool data changes complexity at the same time even if the original tool response is very different. The relative complexity of the data regardless of the tool used is dependent upon the complexity of the medium relative to tool measurement. The relative complexity of the recorded magnitude data changes as a tool transitions from one character type to another. The character we are measuring is the roughness or complexity of the petrophysical curve. Our method provides a way to directly compare different log types based on a quantitative change in signal complexity. For example, using changes in data complexity allow us to correlate gamma ray suites with sonic logs within a well and then across to an adjacent well with similar signatures. Our method creates reliable and automatic correlations to be made in data sets beyond the reasonable cognitive limits of geoscientists in both speed and consistent pattern recognition. [1] Fabio Boschetti, Mike D. Dentith, and Ron D. List, (1996). A fractal-based algorithm for detecting first arrivals on seismic traces. Geophysics, Vol.61, No.4, P. 1095-1102.

Responses of cavity-nesting birds to stand-replacement fire and salvage logging in ponderosa pine/Douglas-fir forests of southwestern Idaho

Treesearch

Victoria A. Saab; Jonathan G. Dudley

1998-01-01

From 1994 to 1996, researchers monitored 695 nests of nine cavity-nesting bird species and measured vegetation at nest sites and at 90 randomly located sites in burned ponderosa pine forests of southwestern Idaho. Site treatments included two types of salvage logging, and unlogged controls. All bird species selected nest sites with higher tree densities, larger...

Coal database for Cook Inlet and North Slope, Alaska

USGS Publications Warehouse

Stricker, Gary D.; Spear, Brianne D.; Sprowl, Jennifer M.; Dietrich, John D.; McCauley, Michael I.; Kinney, Scott A.

2011-01-01

This database is a compilation of published and nonconfidential unpublished coal data from Alaska. Although coal occurs in isolated areas throughout Alaska, this study includes data only from the Cook Inlet and North Slope areas. The data include entries from and interpretations of oil and gas well logs, coal-core geophysical logs (such as density, gamma, and resistivity), seismic shot hole lithology descriptions, measured coal sections, and isolated coal outcrops.

Calculation of the octanol-water partition coefficient of armchair polyhex BN nanotubes

NASA Astrophysics Data System (ADS)

Mohammadinasab, E.; Pérez-Sánchez, H.; Goodarzi, M.

2017-12-01

A predictive model for determination partition coefficient (log P) of armchair polyhex BN nanotubes by using simple descriptors was built. The relationship between the octanol-water log P and quantum chemical descriptors, electric moments, and topological indices of some armchair polyhex BN nanotubes with various lengths and fixed circumference are represented. Based on density functional theory electric moments and physico-chemical properties of those nanotubes are calculated.

Group quenching and galactic conformity at low redshift

NASA Astrophysics Data System (ADS)

Treyer, M.; Kraljic, K.; Arnouts, S.; de la Torre, S.; Pichon, C.; Dubois, Y.; Vibert, D.; Milliard, B.; Laigle, C.; Seibert, M.; Brown, M. J. I.; Grootes, M. W.; Wright, A. H.; Liske, J.; Lara-Lopez, M. A.; Bland-Hawthorn, J.

2018-06-01

We quantify the quenching impact of the group environment using the spectroscopic survey Galaxy and Mass Assembly to z ˜ 0.2. The fraction of red (quiescent) galaxies, whether in groups or isolated, increases with both stellar mass and large-scale (5 Mpc) density. At fixed stellar mass, the red fraction is on average higher for satellites of red centrals than of blue (star-forming) centrals, a galactic conformity effect that increases with density. Most of the signal originates from groups that have the highest stellar mass, reside in the densest environments, and have massive, red only centrals. Assuming a colour-dependent halo-to-stellar-mass ratio, whereby red central galaxies inhabit significantly more massive haloes than blue ones of the same stellar mass, two regimes emerge more distinctly: at log (Mhalo/M⊙) ≲ 13, central quenching is still ongoing, conformity is no longer existent, and satellites and group centrals exhibit the same quenching excess over field galaxies at all mass and density, in agreement with the concept of `group quenching'; at log (Mh/M⊙) ≳ 13, a cut-off that sets apart massive (log (M⋆/M⊙) > 11), fully quenched group centrals, conformity is meaningless, and satellites undergo significantly more quenching than their counterparts in smaller haloes. The latter effect strongly increases with density, giving rise to the density-dependent conformity signal when both regimes are mixed. The star formation of blue satellites in massive haloes is also suppressed compared to blue field galaxies, while blue group centrals and the majority of blue satellites, which reside in low-mass haloes, show no deviation from the colour-stellar mass relation of blue field galaxies.

Geologic cross section D-D' through the Appalachian basin from the Findlay arch, Sandusky County, Ohio, to the Valley and Ridge province, Hardy County, West Virginia: Chapter E.4.1 in Coal and petroleum resources in the Appalachian basin: distribution, geologic framework, and geochemical character

USGS Publications Warehouse

Ryder, Robert T.; Crangle, Robert D.; Trippi, Michael H.; Swezey, Christopher S.; Lentz, Erika E.; Rowan, Elisabeth L.; Hope, Rebecca S.; Ruppert, Leslie F.; Ryder, Robert T.

2014-01-01

This chapter is a re-release of U.S. Geological Survey Scientific Investigations Map 3067, of the same title, by Ryder and others (2009). For this chapter, two appendixes have been added that do not appear with the original version. Appendix A provides Log ASCII Standard (LAS) files for each drill hole along cross-section D-D'; they are text files which encode gamma-ray, neutron, density, and other logs that can be used by most well-logging software. Appendix B provides graphic well-log traces and lithologic descriptions with formation tops from each drill hole.

Deadwood stocks increase with selective logging and large tree frequency in Gabon.

PubMed

Carlson, Ben S; Koerner, Sally E; Medjibe, Vincent P; White, Lee J T; Poulsen, John R

2017-04-01

Deadwood is a major component of aboveground biomass (AGB) in tropical forests and is important as habitat and for nutrient cycling and carbon storage. With deforestation and degradation taking place throughout the tropics, improved understanding of the magnitude and spatial variation in deadwood is vital for the development of regional and global carbon budgets. However, this potentially important carbon pool is poorly quantified in Afrotropical forests and the regional drivers of deadwood stocks are unknown. In the first large-scale study of deadwood in Central Africa, we quantified stocks in 47 forest sites across Gabon and evaluated the effects of disturbance (logging), forest structure variables (live AGB, wood density, abundance of large trees), and abiotic variables (temperature, precipitation, seasonality). Average deadwood stocks (measured as necromass, the biomass of deadwood) were 65 Mg ha -1 or 23% of live AGB. Deadwood stocks varied spatially with disturbance and forest structure, but not abiotic variables. Deadwood stocks increased significantly with logging (+38 Mg ha -1 ) and the abundance of large trees (+2.4 Mg ha -1 for every tree >60 cm dbh). Gabon holds 0.74 Pg C, or 21% of total aboveground carbon in deadwood, a threefold increase over previous estimates. Importantly, deadwood densities in Gabon are comparable to those in the Neotropics and respond similarly to logging, but represent a lower proportion of live AGB (median of 18% in Gabon compared to 26% in the Neotropics). In forest carbon accounting, necromass is often assumed to be a constant proportion (9%) of biomass, but in humid tropical forests this ratio varies from 2% in undisturbed forest to 300% in logged forest. Because logging significantly increases the deadwood carbon pool, estimates of tropical forest carbon should at a minimum use different ratios for logged (mean of 30%) and unlogged forests (mean of 18%). © 2016 John Wiley & Sons Ltd.

Subtidal hydrodynamics in a tropical lagoon: A dimensionless numbers approach

NASA Astrophysics Data System (ADS)

Tenorio-Fernandez, L.; Valle-Levinson, A.; Gomez-Valdes, J.

2018-01-01

Observations in a tropical lagoon of the Yucatan peninsula motivated a non-dimensional number analysis to examine the relative influence of tidal stress, density gradients and wind stress on subtidal hydrodynamics. A two-month observation period in Chelem Lagoon covered the transition from the dry to the wet season. Chelem Lagoon is influenced by groundwater inputs and exhibits a main sub-basin (central sub-basin), a west sub-basin and an east sub-basin. Subtidal hydrodynamics were associated with horizontal density gradients that were modified seasonally by evaporation, precipitation, and groundwater discharge. A tidal Froude number (Fr0), a Wedderburn number (W), and a Stress ratio (S0) were used to diagnose the relative importance of dominant subtidal driving forces. The Froude number (Fr0) compares tidal forcing and baroclinic forcing through the ratio of tidal stress to longitudinal baroclinic pressure gradient. The Wedderburn number (W) relates wind stress to baroclinicity. The stress ratio (S0) sizes tidal stress and wind stress. S0 is a new diagnostic tool for systems influenced by tides and winds, and represents the main contribution of this research. Results show that spring-tide subtidal flows in the tropical lagoon had log(Fr0) ≫ 0 and log(S0) > 0 , i.e., driven mainly by tidal stresses (advective accelerations). Neap tides showed log(Fr0) ≪ 0 and log(S0) < 0) , i.e., flows driven by baroclinicity, especially at the lagoon heads of the east and west sub-basins. However, when the wind stress intensified over the lagoon, the relative importance of baroclinicity decreased and the wind stress controlled the dynamics (log(W) ≫ 0). Each sub-basin exhibited a different subtidal response, according to the dimensionless numbers. The response depended on the fortnightly tidal cycle, the location and magnitude of groundwater input, and the direction and magnitude of the wind stress.

Log analysis of six boreholes in conjunction with geologic characterization above and on top of the Weeks Island salt dome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sattler, A.R.

1996-04-01

Six boreholes were drilled during the geologic characterization and diagnostics of the Weeks Island sinkhole that is over the two-tiered salt mine which was converted for oil storage by the US Strategic Petroleum Reserve. These holes were drilled to provide for geologic characterization of the Weeks Island Salt Dome and its overburden in the immediate vicinity of the sinkhole (mainly through logs and core); to establish a crosswell configuration for seismic tomography; to establish locations for hydrocarbon detection and tracer injection; and to Provide direct observations of sinkhole geometry and material properties. Specific objectives of the logging program were to:more » (1) identify the top of and the physical state of the salt dome; (2) identify the water table; (3) obtain a relative salinity profile in the aquifer within the alluvium, which ranges from the water table directly to the top of the Weeks Island salt dome; and (4) identify a reflecting horizon seen on seismic profiles over this salt dome. Natural gamma, neutron, density, sonic, resistivity and caliper logs were run. Neutron and density logs were run from inside the well casing because of the extremely unstable condition of the deltaic alluvium overburden above the salt dome. The logging program provided important information about the salt dome and the overburden in that (1) the top of the salt dome was identified at {approximately}189 ft bgl (103 ft msl), and the top of the dome contains relatively few fractures; (2) the water table is approximately 1 ft msl, (3) this aquifer appears to become steadily more saline with depth; and (4) the water saturation of much of the alluvium over the salt dome is shown to be influenced by the prevalent heavy rainfall. This logging program, a part of the sinkhole diagnostics, provides unique information about this salt dome and the overburden.« less

Impacts of airborne lidar pulse density on estimating biomass stocks and changes in a selectively logged tropical forest

Treesearch

Carlos Alberto Silva; Andrew Thomas Hudak; Lee Alexander Vierling; Carine Klauberg; Mariano Garcia; Antonio Ferraz; Michael Keller; Jan Eitel; Sassan Saatchi

2017-01-01

Airborne lidar has become a well-suited technology for predicting and mapping many tropical forest attributes, including aboveground biomass (AGB). However, trade-offs exist between lidar pulse density and acquisition cost. The aim of this study was to evaluate the influence of lidar pulse density on AGB change predictions using airborne lidar and field plot data in a...

Influence of stand density on stem quality in pole-size northern hardwoods.

Treesearch

Richard M. Godman; David J. Books

1971-01-01

Relates the type and frequency of limbs and limb-related defects in the first two logs of five hardwood species to residual basal area 15 years after initial cutting. Also discusses other tree characteristics influenced by stand density and the applicability of present silvicultural guides to improve stem quality.

Bacteriophages carrying antibiotic resistance genes in fecal waste from cattle, pigs, and poultry.

PubMed

Colomer-Lluch, Marta; Imamovic, Lejla; Jofre, Juan; Muniesa, Maite

2011-10-01

This study evaluates the occurrence of bacteriophages carrying antibiotic resistance genes in animal environments. bla(TEM), bla(CTX-M) (clusters 1 and 9), and mecA were quantified by quantitative PCR in 71 phage DNA samples from pigs, poultry, and cattle fecal wastes. Densities of 3 to 4 log(10) gene copies (GC) of bla(TEM), 2 to 3 log(10) GC of bla(CTX-M), and 1 to 3 log(10) GC of mecA per milliliter or gram of sample were detected, suggesting that bacteriophages can be environmental vectors for the horizontal transfer of antibiotic resistance genes.

Estimating the population density of the Asian tapir (Tapirus indicus) in a selectively logged forest in Peninsular Malaysia.

PubMed

Rayan, D Mark; Mohamad, Shariff Wan; Dorward, Leejiah; Aziz, Sheema Abdul; Clements, Gopalasamy Reuben; Christopher, Wong Chai Thiam; Traeholt, Carl; Magintan, David

2012-12-01

The endangered Asian tapir (Tapirus indicus) is threatened by large-scale habitat loss, forest fragmentation and increased hunting pressure. Conservation planning for this species, however, is hampered by a severe paucity of information on its ecology and population status. We present the first Asian tapir population density estimate from a camera trapping study targeting tigers in a selectively logged forest within Peninsular Malaysia using a spatially explicit capture-recapture maximum likelihood based framework. With a trap effort of 2496 nights, 17 individuals were identified corresponding to a density (standard error) estimate of 9.49 (2.55) adult tapirs/100 km(2) . Although our results include several caveats, we believe that our density estimate still serves as an important baseline to facilitate the monitoring of tapir population trends in Peninsular Malaysia. Our study also highlights the potential of extracting vital ecological and population information for other cryptic individually identifiable animals from tiger-centric studies, especially with the use of a spatially explicit capture-recapture maximum likelihood based framework. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Environmental parameters influence on the dynamics of total and pathogenic Vibrio parahaemolyticus densities in Crassostrea virginica harvested from Mexico's Gulf coast.

PubMed

López-Hernández, Karla M; Pardío-Sedas, Violeta T; Lizárraga-Partida, Leonardo; Williams, José de J; Martínez-Herrera, David; Flores-Primo, Argel; Uscanga-Serrano, Roxana; Rendón-Castro, Karla

2015-02-15

The influence of environmental parameters on the total and pathogenic Vibrio parahaemolyticus seasonal densities in American oysters (Crassostrea virginica) was evaluated for 1 year. Harvesting site A yielded the highest mean densities of V. parahaemolyticus tlh+, tdh+/trh-, tdh-/trh+ and tdh+/trh+ during spring season at 2.57, 1.74, 0.36, and -0.40 log10 MPN/g, respectively, and tdh+/orf8+ during winter season (0.90 log10 MPN/g). V. parahaemolyticus tlh+ densities were associated to salinity (R(2)=0.372, P<0.022), tdh+/trh+ to turbidity (R(2)=0.597, P<0.035), and orf8+ to temperature, salinity, and pH (R(2)=0.964, P<0.001). The exposure to salinity and temperature conditions during winter and spring seasons regulated the dynamics of V. parahaemolyticus harboring potentially pathogenic genotypes within the oyster. The adaptive response of V. parahaemolyticus to seasonal environmental changes may lead to an increase in survival and virulence, threatening the seafood safety and increasing the risk of illness. Copyright © 2014 Elsevier Ltd. All rights reserved.

Synergistic effect of ultrasonic pre-treatment combined with UV irradiation for secondary effluent disinfection.

PubMed

Jin, Xin; Li, Zifu; Xie, Lanlan; Zhao, Yuan; Wang, Tingting

2013-11-01

The ultraviolet (UV) disinfection efficiency is often affected by suspended solids (SS). Given their high concentration or large particle size, SS can scatter UV light and provide shielding for bacteria. Thus, ultrasound is often employed as a pre-treatment process to improve UV disinfection. This work investigated the synergistic effect of ultrasound combined with UV for secondary effluent disinfection. Bench-scale experiments were conducted in using samples obtained from secondary sedimentation tanks. These tanks belonged to three wastewater treatment plants in Beijing that use different kinds of biological treatment methods. Several parameters may contribute to the changes in the efficiency of ultrasound and UV disinfection. Thus, the frequency and energy density of ultrasound, as well as the SS, were investigated. Results demonstrated that samples which have relatively higher SS concentrations or higher percentages of larger particles have less disinfection efficiency using UV disinfection alone. However, the presence of ultrasound could improve the disinfection efficiency because it has synergistic effect. Changes in the particle size distribution and SS concentration notably affected the efficiency of UV disinfection. The efficiency of Escherichia coli elimination can be decreased by 1.2 log units as the SS concentration increases from 16.9 mg/l to 25.4 mg/l at a UV energy density of 40 mJ/cm(2). UV disinfection alone reduced the E. coli population by 3.4 log units. However, the synergistic disinfection of ultrasound and UV could reach 5.4 log units during the reduction of E. coli at a 40 kHz frequency and an energy density of 2.64 kJ/l. The additional synergistic effect is 1.1 log units. Copyright © 2013 Elsevier B.V. All rights reserved.

Windthrow and salvage logging in an old-growth hemlock-northern hardwoods forest

USGS Publications Warehouse

Lang, K.D.; Schulte, L.A.; Guntenspergen, G.R.

2009-01-01

Although the initial response to salvage (also known as, post-disturbance or sanitary) logging is known to vary among system components, little is known about longer term forest recovery. We examine forest overstory, understory, soil, and microtopographic response 25 years after a 1977 severe wind disturbance on the Flambeau River State Forest in Wisconsin, USA, a portion of which was salvage logged. Within this former old-growth hemlock-northern hardwoods forest, tree dominance has shifted from Eastern hemlock (Tsuga canadensis) to broad-leaf deciduous species (Ulmus americana, Acer saccharum, Tilia americana, Populus tremuloides, and Betula alleghaniensis) in both the salvaged and unsalvaged areas. While the biological legacies of pre-disturbance seedlings, saplings, and mature trees were initially more abundant in the unsalvaged area, regeneration through root suckers and stump sprouts was common in both areas. After 25 years, tree basal area, sapling density, shrub layer density, and seedling cover had converged between unsalvaged and salvaged areas. In contrast, understory herb communities differed between salvaged and unsalvaged forest, with salvaged forest containing significantly higher understory herb richness and cover, and greater dominance of species benefiting from disturbance, especially Solidago species. Soil bulk density, pH, organic carbon content, and organic nitrogen content were also significantly higher in the salvaged area. The structural legacy of tip-up microtopography remains more pronounced in the unsalvaged area, with significantly taller tip-up mounds and deeper pits. Mosses and some forest herbs, including Athyrium filix-femina and Hydrophyllum virginianum, showed strong positive responses to this tip-up microrelief, highlighting the importance of these structural legacies for understory biodiversity. In sum, although the pathways of recovery differed, this forest appeared to be as resilient to the compound disturbances of windthrow plus salvage logging as to wind disturbance alone, by most vegetative measures.

Variation in wood density by stand origin and log position for loblolly pine sawtimber in the coastal plain of Arkansas

Treesearch

Paul F. Doruska; David W. Patterson; Travis E. Posey

2006-01-01

A study was undertaken to investigate and report scaling factor variation for loblolly pine sawtimber in the Coastal Plain of Arkansas. Scaling factors for butt logs averaged 65.6 pounds per cubic foot for trees in stands of naturally seeded origin and 65.0 pounds per cubic foot for plantation trees. These scaling factors were not significantly different by stand...

Regeneration patterns of northern white cedar, an old-growth forest dominant

USGS Publications Warehouse

Scott, Michael L.; Murphy, Peter G.

1987-01-01

Regeneration of Thuja occidentalis L. was examined in an old-growth dune forest on South Manitou Island, Michigan. To estimate the current status of cedar regeneration, we determined size structure of seedlings and stems and analyzed present patterns of establishment and persistence relative to substrate type. There has been a shift in the pattern of cedar establishment from soil to log substrates. While 97% of all stems ≥15 cm dbh are associated with a soil substrate, 81% of stems ≥2.5cm-25 cm tall. There was no significant relationship between the state of log decay and the density of seedlings >25 cm in height, indicating that long-term survival is not dependent on the degree of log decomposition. However, survival on logs is associated with canopy openings. Seedlings >25 cm tall were associated with gaps, and 78% of cedar stems (≥2.5 cm dbh) on logs were associated with a single windthrow gap. Thus, current cedar regeneration in this old-growth forest depends on logs and the canopy openings associated with them.

The SAMI Galaxy Survey: spatially resolving the environmental quenching of star formation in GAMA galaxies

NASA Astrophysics Data System (ADS)

Schaefer, A. L.; Croom, S. M.; Allen, J. T.; Brough, S.; Medling, A. M.; Ho, I.-T.; Scott, N.; Richards, S. N.; Pracy, M. B.; Gunawardhana, M. L. P.; Norberg, P.; Alpaslan, M.; Bauer, A. E.; Bekki, K.; Bland-Hawthorn, J.; Bloom, J. V.; Bryant, J. J.; Couch, W. J.; Driver, S. P.; Fogarty, L. M. R.; Foster, C.; Goldstein, G.; Green, A. W.; Hopkins, A. M.; Konstantopoulos, I. S.; Lawrence, J. S.; López-Sánchez, A. R.; Lorente, N. P. F.; Owers, M. S.; Sharp, R.; Sweet, S. M.; Taylor, E. N.; van de Sande, J.; Walcher, C. J.; Wong, O. I.

2017-01-01

We use data from the Sydney-AAO Multi-Object Integral Field Spectrograph Galaxy Survey and the Galaxy And Mass Assembly (GAMA) survey to investigate the spatially resolved signatures of the environmental quenching of star formation in galaxies. Using dust-corrected measurements of the distribution of Hα emission, we measure the radial profiles of star formation in a sample of 201 star-forming galaxies covering three orders of magnitude in stellar mass (M*; 108.1-1010.95 M⊙) and in fifth nearest neighbour local environment density (Σ5; 10-1.3-102.1 Mpc-2). We show that star formation rate gradients in galaxies are steeper in dense (log10(Σ5/Mpc2) > 0.5) environments by 0.58 ± 0.29 dex re^{-1} in galaxies with stellar masses in the range 10^{10} < M_{*}/M_{⊙} < 10^{11} and that this steepening is accompanied by a reduction in the integrated star formation rate. However, for any given stellar mass or environment density, the star formation morphology of galaxies shows large scatter. We also measure the degree to which the star formation is centrally concentrated using the unitless scale-radius ratio (r50,Hα/r50,cont), which compares the extent of ongoing star formation to previous star formation. With this metric, we find that the fraction of galaxies with centrally concentrated star formation increases with environment density, from ˜5 ± 4 per cent in low-density environments (log10(Σ5/Mpc2) < 0.0) to 30 ± 15 per cent in the highest density environments (log10(Σ5/Mpc2) > 1.0). These lines of evidence strongly suggest that with increasing local environment density, the star formation in galaxies is suppressed, and that this starts in their outskirts such that quenching occurs in an outside-in fashion in dense environments and is not instantaneous.

Surface Soil Changes Following Selective Logging in an Eastern Amazon Forest

NASA Technical Reports Server (NTRS)

Olander, Lydia P.; Bustamante, Mercedes M.; Asner, Gregory P.; Telles, Everaldo; Prado, Zayra; Camargo, Plinio B.

2005-01-01

In the Brazilian Amazon, selective logging is second only to forest conversion in its extent. Conversion to pasture or agriculture tends to reduce soil nutrients and site productivity over time unless fertilizers are added. Logging removes nutrients in bole wood, enough that repeated logging could deplete essential nutrients over time. After a single logging event, nutrient losses are likely to be too small to observe in the large soil nutrient pools, but disturbances associated with logging also alter soil properties. Selective logging, particularly reduced-impact logging, results in consistent patterns of disturbance that may be associated with particular changes in soil properties. Soil bulk density, pH, carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), magnesium (Mg), potassium (K), iron (Fe), aluminum (Al), delta(sup 3)C, delta(sup 15)N, and P fractionations were measured on the soils of four different types of loggingrelated disturbances: roads, decks, skids, and treefall gaps. Litter biomass and percent bare ground were also determined in these areas. To evaluate the importance of fresh foliage inputs from downed tree crowns in treefall gaps, foliar nutrients for mature forest trees were also determined and compared to that of fresh litterfall. The immediate impacts of logging on soil properties and how these might link to the longer-term estimated nutrient losses and the observed changes in soils were studied.

Fracture Modes and Identification of Fault Zones in Wenchuan Earthquake Fault Scientific Drilling Boreholes

NASA Astrophysics Data System (ADS)

Deng, C.; Pan, H.; Zhao, P.; Qin, R.; Peng, L.

2017-12-01

After suffering from the disaster of Wenchuan earthquake on May 12th, 2008, scientists are eager to figure out the structure of formation, the geodynamic processes of faults and the mechanism of earthquake in Wenchuan by drilling five holes into the Yingxiu-Beichuan fault zone and Anxian-Guanxian fault zone. Fractures identification and in-situ stress determination can provide abundant information for formation evaluation and earthquake study. This study describe all the fracture modes in the five boreholes on the basis of cores and image logs, and summarize the response characteristics of fractures in conventional logs. The results indicate that the WFSD boreholes encounter enormous fractures, including natural fractures and induced fractures, and high dip-angle conductive fractures are the most common fractures. The maximum horizontal stress trends along the borehole are deduced as NWW-SEE according to orientations of borehole breakouts and drilling-induced fractures, which is nearly parallel to the strikes of the younger natural fracture sets. Minor positive deviations of AC (acoustic log) and negative deviation of DEN (density log) demonstrate their responses to fracture, followed by CNL (neutron log), resistivity logs and GR (gamma ray log) at different extent of intensity. Besides, considering the fact that the reliable methods for identifying fracture zone, like seismic, core recovery and image logs, can often be hampered by their high cost and limited application, this study propose a method by using conventional logs, which are low-cost and available in even old wells. We employ wavelet decomposition to extract the high frequency information of conventional logs and reconstruction a new log in special format of enhance fracture responses and eliminate nonfracture influence. Results reveal that the new log shows obvious deviations in fault zones, which confirm the potential of conventional logs in fracture zone identification.

Endothelial keratoplasty with infant donor tissue

PubMed Central

Kobayashi, Akira; Yokogawa, Hideaki; Yamazaki, Natsuko; Masaki, Toshinori; Sugiyama, Kazuhisa

2014-01-01

Here we report a case of endothelial keratoplasty with infant donor tissue obtained after brain death. A 52-year-old man with endothelial dysfunction of unknown cause in the right eye underwent non-Descemet stripping automated endothelial keratoplasty (nDSAEK) with tissue from an infant donor (2 years). Intraoperative and postoperative complications were recorded. Best corrected visual acuity and donor central endothelial cell density were recorded preoperatively and postoperatively. Infant donor tissue preparation with a microkeratome set at 300 μm was successful; the donor tissue was extremely elastic and soft compared with adult tissue. The central endothelial cell density of the infant donor tissue was as high as 4,291 cells/mm2. No complications were observed during donor tissue (8.0 mm in diameter) insertion with the double-glide technique (Busin glide with intraocular lens sheet glide) or any of the other procedures. Best corrected visual acuity improved from 1.7 logMAR (logarithm of the minimum angle of resolution; 0.02 decimal visual acuity) preoperatively to 0.2 logMAR (0.6) after 6 months and 0.1 logMAR (0.8) after 1 year. The central endothelial cell density after 6 months was 4,098 cells/mm2 (representing a 4.5% cell loss from preoperative donor cell measurements), and the central endothelial cell density after 1 year was 4,032 cells/mm2 (6.0% decrease). Infant donor tissue may be preferably used for DSAEK/nDASEK, since it may not be suitable for penetrating keratoplasty or Descemet membrane endothelial keratoplasty. PMID:25246761

LOG-NORMAL DISTRIBUTION OF COSMIC VOIDS IN SIMULATIONS AND MOCKS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russell, E.; Pycke, J.-R., E-mail: er111@nyu.edu, E-mail: jrp15@nyu.edu

2017-01-20

Following up on previous studies, we complete here a full analysis of the void size distributions of the Cosmic Void Catalog based on three different simulation and mock catalogs: dark matter (DM), haloes, and galaxies. Based on this analysis, we attempt to answer two questions: Is a three-parameter log-normal distribution a good candidate to satisfy the void size distributions obtained from different types of environments? Is there a direct relation between the shape parameters of the void size distribution and the environmental effects? In an attempt to answer these questions, we find here that all void size distributions of thesemore » data samples satisfy the three-parameter log-normal distribution whether the environment is dominated by DM, haloes, or galaxies. In addition, the shape parameters of the three-parameter log-normal void size distribution seem highly affected by environment, particularly existing substructures. Therefore, we show two quantitative relations given by linear equations between the skewness and the maximum tree depth, and between the variance of the void size distribution and the maximum tree depth, directly from the simulated data. In addition to this, we find that the percentage of voids with nonzero central density in the data sets has a critical importance. If the number of voids with nonzero central density reaches ≥3.84% in a simulation/mock sample, then a second population is observed in the void size distributions. This second population emerges as a second peak in the log-normal void size distribution at larger radius.« less

Self-optimizing Monte Carlo method for nuclear well logging simulation

NASA Astrophysics Data System (ADS)

Liu, Lianyan

1997-09-01

In order to increase the efficiency of Monte Carlo simulation for nuclear well logging problems, a new method has been developed for variance reduction. With this method, an importance map is generated in the regular Monte Carlo calculation as a by-product, and the importance map is later used to conduct the splitting and Russian roulette for particle population control. By adopting a spatial mesh system, which is independent of physical geometrical configuration, the method allows superior user-friendliness. This new method is incorporated into the general purpose Monte Carlo code MCNP4A through a patch file. Two nuclear well logging problems, a neutron porosity tool and a gamma-ray lithology density tool are used to test the performance of this new method. The calculations are sped up over analog simulation by 120 and 2600 times, for the neutron porosity tool and for the gamma-ray lithology density log, respectively. The new method enjoys better performance by a factor of 4~6 times than that of MCNP's cell-based weight window, as per the converged figure-of-merits. An indirect comparison indicates that the new method also outperforms the AVATAR process for gamma-ray density tool problems. Even though it takes quite some time to generate a reasonable importance map from an analog run, a good initial map can create significant CPU time savings. This makes the method especially suitable for nuclear well logging problems, since one or several reference importance maps are usually available for a given tool. Study shows that the spatial mesh sizes should be chosen according to the mean-free-path. The overhead of the importance map generator is 6% and 14% for neutron and gamma-ray cases. The learning ability towards a correct importance map is also demonstrated. Although false-learning may happen, physical judgement can help diagnose with contributon maps. Calibration and analysis are performed for the neutron tool and the gamma-ray tool. Due to the fact that a very good initial importance map is always available after the first point has been calculated, high computing efficiency is maintained. The availability of contributon maps provides an easy way of understanding the logging measurement and analyzing for the depth of investigation.

Maximum likelihood density modification by pattern recognition of structural motifs

DOEpatents

Terwilliger, Thomas C.

2004-04-13

An electron density for a crystallographic structure having protein regions and solvent regions is improved by maximizing the log likelihood of a set of structures factors {F.sub.h } using a local log-likelihood function: (x)+p(.rho.(x).vertline.SOLV)p.sub.SOLV (x)+p(.rho.(x).vertline.H)p.sub.H (x)], where p.sub.PROT (x) is the probability that x is in the protein region, p(.rho.(x).vertline.PROT) is the conditional probability for .rho.(x) given that x is in the protein region, and p.sub.SOLV (x) and p(.rho.(x).vertline.SOLV) are the corresponding quantities for the solvent region, p.sub.H (x) refers to the probability that there is a structural motif at a known location, with a known orientation, in the vicinity of the point x; and p(.rho.(x).vertline.H) is the probability distribution for electron density at this point given that the structural motif actually is present. One appropriate structural motif is a helical structure within the crystallographic structure.

Evidence for a gene influencing the TG/HDL-C ratio on chromosome 7q32.3-qter: a genome-wide scan in the Framingham study.

PubMed

Shearman, A M; Ordovas, J M; Cupples, L A; Schaefer, E J; Harmon, M D; Shao, Y; Keen, J D; DeStefano, A L; Joost, O; Wilson, P W; Housman, D E; Myers, R H

2000-05-22

Some studies show that plasma triglyceride (TG) levels are a significant independent risk factor for cardiovascular disease (CVD). TG levels are inversely correlated with high density lipoprotein cholesterol (HDL-C) levels, and their metabolism may be closely interrelated. Therefore, the TG/HDL-C ratio may be a relevant CVD risk factor. Our analysis of families in the Framingham Heart Study gave a genetic heritability estimate for log(TG) of 0.40 and for log(TG/HDL-C) of 0.49, demonstrating an important genetic component for both. A 10 cM genome-wide scan for log(TG) level and log(TG/HDL-C) was carried out for the largest 332 extended families of the Framingham Heart Study (1702 genotyped individuals). The highest multipoint variance component LOD scores obtained for both log(TG) and log(TG/HDL-C) were on chromosome 7 (at 155 cM), where the results for the two phenotypes were 1.8 and 2.5, respectively. The 7q32.3-qter region contains several candidate genes. Four other regions with multipoint LOD scores greater than one were identified on chromosome 3 [LOD score for log(TG/HDL-C) = 1.8 at 140 cM], chromosome 11 [LOD score for log(TG/HDL-C) = 1.1 at 125 cM], chromosome 16 [LOD score for log(TG) = 1.5 at 70 cM, LOD score for log(TG/HDL-C) = 1.1 at 75 cM] and chromosome 20 [LOD score for log(TG/HDL-C) = 1.7 at 35 cM, LOD score for log(TG) = 1.3 at 40 cM]. These results identify loci worthy of further study.

Temporal scaling of hydraulic head and river base flow and its implication for groundwater recharge

USGS Publications Warehouse

Zhang, You‐Kuan; Schilling, Keith

2004-01-01

Spectral analyses were conducted for hourly hydraulic head (h) data observed over a 4‐year period at seven monitoring wells in the Walnut Creek watershed, Iowa. The log power spectral density of the hydraulic head fluctuations versus log frequency (f) at all seven wells is shown to have a distinct slope or fractal dimension (D), indicating temporal scaling in the time series of water level fluctuations. The fractal dimension of the time series varies from well to well, and the spectrum for the average h over all seven wells has a fractal dimension of 1.46 and Hurst coefficient of 0.54. The log power spectral density of estimated base flow in the Walnut Creek and four other watersheds versus log f is shown to have two distinct slopes with a break in scaling at about 30 days. It is shown that the groundwater recharge process in a basin can be estimated from a head spectrum based on existing theoretical results. Hydraulic head in an aquifer may fluctuate as a fractal in time in response to either a white noise or fractal recharge process, depending on physical parameters (i.e., transmissivity and specific yield) of the aquifer. The recharge process at the Walnut Creek watershed is shown to have a white noise spectrum based on the observed head spectrum.

A Numerical Fit of Analytical to Simulated Density Profiles in Dark Matter Haloes

NASA Astrophysics Data System (ADS)

Caimmi, R.; Marmo, C.; Valentinuzzi, T.

2005-06-01

Analytical and geometrical properties of generalized power-law (GPL) density profiles are investigated in detail. In particular, a one-to-one correspondence is found between mathematical parameters (a scaling radius, r_0, a scaling density, rho_0, and three exponents, alpha, beta, gamma), and geometrical parameters (the coordinates of the intersection of the asymptotes, x_C, y_C, and three vertical intercepts, b, b_beta, b_gamma, related to the curve and the asymptotes, respectively): (r_0,rho_0,alpha,beta,gamma) <--> (x_C,y_C,b,b_beta,b_gamma). Then GPL density profiles are compared with simulated dark haloes (SDH) density profiles, and nonlinear least-absolute values and least-squares fits involving the above mentioned five parameters (RFSM5 method) are prescribed. More specifically, the sum of absolute values or squares of absolute logarithmic residuals, R_i= log rhoSDH(r_i)-log rhoGPL(r_i), is evaluated on 10^5 points making a 5- dimension hypergrid, through a few iterations. The size is progressively reduced around a fiducial minimum, and superpositions on nodes of earlier hypergrids are avoided. An application is made to a sample of 17 SDHs on the scale of cluster of galaxies, within a flat LambdaCDM cosmological model (Rasia et al. 2004). In dealing with the mean SDH density profile, a virial radius, rvir, averaged over the whole sample, is assigned, which allows the calculation of the remaining parameters. Using a RFSM5 method provides a better fit with respect to other methods. The geometrical parameters, averaged over the whole sample of best fitting GPL density profiles, yield (alpha,beta,gamma) approx(0.6,3.1,1.0), to be compared with (alpha,beta,gamma)=(1,3,1), i.e. the NFW density profile (Navarro et al. 1995, 1996, 1997), (alpha,beta,gamma)=(1.5,3,1.5) (Moore et al. 1998, 1999), (alpha,beta,gamma)=(1,2.5,1) (Rasia et al. 2004); and, in addition, gamma approx 1.5 (Hiotelis 2003), deduced from the application of a RFSM5 method, but using a different definition of scaled radius, or concentration; and gamma approx 1.2-1.3 deduced from more recent high-resolution simulations (Diemand et al. 2004, Reed et al. 2005). No evident correlation is found between SDH dynamical state (relaxed or merging) and asymptotic inner slope of the fitting logarithmic density profile or (for SDH comparable virial masses) scaled radius. Mean values and standard deviations of some parameters are calculated, and in particular the decimal logarithm of the scaled radius, xivir, reads < log xivir >=0.74 and sigma_s log xivir=0.15-0.17, consistent with previous results related to NFW density profiles. It provides additional support to the idea, that NFW density profiles may be considered as a convenient way to parametrize SDH density profiles, without implying that it necessarily produces the best possible fit (Bullock et al. 2001). A certain degree of degeneracy is found in fitting GPL to SDH density profiles. If it is intrinsic to the RFSM5 method or it could be reduced by the next generation of high-resolution simulations, still remains an open question.

Preliminary report on geophysical well-logging activity on the Salton Sea Scientific Drilling Project, Imperial Valley, California

USGS Publications Warehouse

Paillet, Frederick L.; Morin, R.H.; Hodges, H.E.

1986-01-01

The Salton Sea Scientific Drilling Project has culminated in a 10,564-ft deep test well, State 2-14 well, in the Imperial Valley of southern California. A comprehensive scientific program of drilling, coring, and downhole measurements, which was conducted for about 5 months, has obtained much scientific information concerning the physical and chemical processes associated with an active hydrothermal system. This report primarily focuses on the geophysical logging activities at the State 2-14 well and provides early dissemination of geophysical data to other investigators working on complementary studies. Geophysical-log data were obtained by a commercial logging company and by the U.S. Geological Survey (USGS). Most of the commercial logs were obtained during three visits to the site; only one commercial log was obtained below a depth of 6,000 ft. The commercial logs obtained were dual induction, natural gamma, compensated neutron formation density, caliper and sonic. The USGS logging effort consisted of four primary periods, with many logs extending below a depth of 6,000 ft. The USGS logs obtained were temperature, caliper, natural gamma, gamma spectral, epithermal neutron, acoustic velocity, full-waveform, and acoustic televiewer. Various problems occurred throughout the drilling phase of the Salton Sea Scientific Drilling Project that made successful logging difficult: (1) borehole constrictions, possibly resulting from mud coagulation, (2) maximum temperatures of about 300 C, and (3) borehole conditions unfavorable for logging because of numerous zones of fluid loss, cement plugs, and damage caused by repeated trips in and out of the hole. These factors hampered and compromised logging quality at several open-hole intervals. The quality of the logs was dependent on the degree of probe sophistication and sensitivity to borehole-wall conditions. Digitized logs presented were processed on site and are presented in increments of 1,000 ft. A summary of the numerous factors that may be relevant to this interpretation also is presented. (Lantz-PTT)

Anomalous D-Log E curve with high contrast developer Kodak D8 on ultra fine grain emulsion BB640.

PubMed

Ulibarrena, M; Mendez, M; Blaya, S; Fimia, A

2001-12-03

D-Log E curves, also known as H-D curves, are used since the XIX century as a tool for describing the characteristics of silver halide emulsions. This curve has a very standard shape, with a linear region, a toe, a shoulder and a solarization region. In this work we present a distortion of the usual curve due to the action of a high contrast developer, Kodak D8, on an ultra fine grain emulsion, BB640\\cite{ov04}. The solarization effect is replaced by a linear zone where developed densities increase with increasing exposures, until all silver halide present in the emulsion is reduced by developer D8 to metallic silver. Densities higher than 11 have been obtained.

Aphid aerial density profiles are consistent with turbulent advection amplifying flight behaviours: abandoning the epithet ‘passive’

PubMed Central

Reynolds, Andy M; Reynolds, Don R

2008-01-01

Seminal field studies led by C. G. Johnson in the 1940s and 1950s showed that aphid aerial density diminishes with height above the ground such that the linear regression coefficient, b, of log density on log height provides a single-parameter characterization of the vertical density profile. This coefficient decreases with increasing atmospheric stability, ranging from −0.27 for a fully convective boundary layer to −2.01 for a stable boundary layer. We combined a well-established Lagrangian stochastic model of atmospheric dispersal with simple models of aphid behaviour in order to account for the range of aerial density profiles. We show that these density distributions are consistent with the aphids producing just enough lift to become neutrally buoyant when they are in updraughts and ceasing to produce lift when they are in downdraughts. This active flight behaviour in a weak flier is thus distinctly different from the aerial dispersal of seeds and wingless arthropods, which is passive once these organisms have launched into the air. The novel findings from the model indicate that the epithet ‘passive’ often applied to the windborne migration of small winged insects is misleading and should be abandoned. The implications for the distances traversed by migrating aphids under various boundary-layer conditions are outlined. PMID:18782743

Snow, Firn and Ice Heterogeneity within Larsen C Ice Shelf Revealed by Borehole Optical-televiewing

NASA Astrophysics Data System (ADS)

Hubbard, B. P.; Ashmore, D.; Luckman, A. J.; Kulessa, B.; Bevan, S. L.; Booth, A.; Kuipers Munneke, P.; O'Leary, M.; Sevestre, H.

2016-12-01

The north-western sector of Larsen C Ice Shelf (LCIS), Antarctica, hosts intermittent surface ponds resulting from intense melting, largely driven by warm föhn winds. The fate of such surface melt water is largely controlled by the shelf's firn structure, which also dictates shelf density (widely used to reconstruct ice shelf thickness from altimetric data) and preconditioning to hydrofracture. Here, we report a suite of five 90 m long optical-televiewer (OPTV) borehole logs from the northern and central regions of LCIS recorded in spring 2014 and 2015. For each OPTV log we reconstruct vertical variations in material density via an empirical OPTV log-ice core calibration, and apply a thresholding technique to estimate refrozen ice content within the firn column. These data are combined to define five material facies present within this sector of LCIS. The firn/ice column is anomalously dense at all five sites, having an overall mean depth-averaged density of 873 +/-32 kg m-3. In terms of spatial variability, our findings generally support previous estimates of firn air content fields and implied infiltration ice content. However, they also highlight finer-resolution complexity of ice shelf structure. For example, the most dense ice, with the lowest equivalent firn air content, is not located within the most westerly inlets, where firn-driven melting and ponding are most active, but some tens of km down-flow of these areas. We interpret this effect in terms of the inheritance nearer the grounding line of relatively low-density glacial ice (e.g., 52 m thick with a density of 852 +/-21 kg m-3 in northernmost Cabinet Inlet) advected from inland. This inherited ice forms one of five facies identified across the study region. These are, extending broadly downwards into the shelf, and with different representation at each site: local accumulation (F1); local accumulation hosting substantial infiltration ice, i.e. influenced by intense melt but insufficient to form surface ponds (F2); massive refrozen pond ice (F3); ice composed of both metamorphosed host ice and infiltration ice, the origin of which is difficult to determine due to the facies being located at depth within our logs (F4); and glacial ice inherited from up-flow (F5).

Impact of selective logging on inbreeding and gene dispersal in an Amazonian tree population of Carapa guianensis Aubl.

PubMed

Cloutier, D; Kanashiro, M; Ciampi, A Y; Schoen, D J

2007-02-01

Selective logging may impact patterns of genetic diversity within populations of harvested forest tree species by increasing distances separating conspecific trees, and modifying physical and biotic features of the forest habitat. We measured levels of gene diversity, inbreeding, pollen dispersal and spatial genetic structure (SGS) of an Amazonian insect-pollinated Carapa guianensis population before and after commercial selective logging. Similar levels of gene diversity and allelic richness were found before and after logging in both the adult and the seed generations. Pre- and post-harvest outcrossing rates were high, and not significantly different from one another. We found no significant levels of biparental inbreeding either before or after logging. Low levels of pollen pool differentiation were found, and the pre- vs. post-harvest difference was not significant. Pollen dispersal distance estimates averaged between 75 m and 265 m before logging, and between 76 m and 268 m after logging, depending on the value of tree density and the dispersal model used. There were weak and similar levels of differentiation of allele frequencies in the adults and in the pollen pool, before and after logging occurred, as well as weak and similar pre- and post-harvest levels of SGS among adult trees. The large neighbourhood sizes estimated suggest high historical levels of gene flow. Overall our results indicate that there is no clear short-term genetic impact of selective logging on this population of C. guianensis.

A solar tornado observed by EIS. Plasma diagnostics

NASA Astrophysics Data System (ADS)

Levens, P. J.; Labrosse, N.; Fletcher, L.; Schmieder, B.

2015-10-01

Context. The term "solar tornadoes" has been used to describe apparently rotating magnetic structures above the solar limb, as seen in high resolution images and movies from the Atmospheric Imaging Assembly (AIA) aboard the Solar Dynamics Observatory (SDO). These often form part of the larger magnetic structure of a prominence, however the links between them remain unclear. Here we present plasma diagnostics on a tornado-like structure and its surroundings, seen above the limb by the Extreme-ultraviolet Imaging Spectrometer (EIS) aboard the Hinode satellite. Aims: We aim to extend our view of the velocity patterns seen in tornado-like structures with EIS to a wider range of temperatures and to use density diagnostics, non-thermal line widths, and differential emission measures to provide insight into the physical characteristics of the plasma. Methods: Using Gaussian fitting to fit and de-blend the spectral lines seen by EIS, we calculated line-of-sight velocities and non-thermal line widths. Along with information from the CHIANTI database, we used line intensity ratios to calculate electron densities at each pixel. Using a regularised inversion code we also calculated the differential emission measure (DEM) at different locations in the prominence. Results: The split Doppler-shift pattern is found to be visible down to a temperature of around log T = 6.0. At temperatures lower than this, the pattern is unclear in this data set. We obtain an electron density of log ne = 8.5 when looking towards the centre of the tornado structure at a plasma temperature of log T = 6.2, as compared to the surroundings of the tornado structure where we find log ne to be nearer 9. Non-thermal line widths show broader profiles at the tornado location when compared to the surrounding corona. We discuss the differential emission measure in both the tornado and the prominence body, which suggests that there is more contribution in the tornado at temperatures below log T = 6.0 than in the prominence. A movie is available in electronic form at http://www.aanda.org

Computer analysis of digital well logs

USGS Publications Warehouse

Scott, James H.

1984-01-01

A comprehensive system of computer programs has been developed by the U.S. Geological Survey for analyzing digital well logs. The programs are operational on a minicomputer in a research well-logging truck, making it possible to analyze and replot the logs while at the field site. The minicomputer also serves as a controller of digitizers, counters, and recorders during acquisition of well logs. The analytical programs are coordinated with the data acquisition programs in a flexible system that allows the operator to make changes quickly and easily in program variables such as calibration coefficients, measurement units, and plotting scales. The programs are designed to analyze the following well-logging measurements: natural gamma-ray, neutron-neutron, dual-detector density with caliper, magnetic susceptibility, single-point resistance, self potential, resistivity (normal and Wenner configurations), induced polarization, temperature, sonic delta-t, and sonic amplitude. The computer programs are designed to make basic corrections for depth displacements, tool response characteristics, hole diameter, and borehole fluid effects (when applicable). Corrected well-log measurements are output to magnetic tape or plotter with measurement units transformed to petrophysical and chemical units of interest, such as grade of uranium mineralization in percent eU3O8, neutron porosity index in percent, and sonic velocity in kilometers per second.

Prediction of drug transport processes using simple parameters and PLS statistics. The use of ACD/logP and ACD/ChemSketch descriptors.

PubMed

Osterberg, T; Norinder, U

2001-01-01

A method of modelling and predicting biopharmaceutical properties using simple theoretically computed molecular descriptors and multivariate statistics has been investigated for several data sets related to solubility, IAM chromatography, permeability across Caco-2 cell monolayers, human intestinal perfusion, brain-blood partitioning, and P-glycoprotein ATPase activity. The molecular descriptors (e.g. molar refractivity, molar volume, index of refraction, surface tension and density) and logP were computed with ACD/ChemSketch and ACD/logP, respectively. Good statistical models were derived that permit simple computational prediction of biopharmaceutical properties. All final models derived had R(2) values ranging from 0.73 to 0.95 and Q(2) values ranging from 0.69 to 0.86. The RMSEP values for the external test sets ranged from 0.24 to 0.85 (log scale).

Morphological and quantitative changes in mitochondria, plastids, and peroxisomes during the log-to-stationary transition of the growth phase in cultured tobacco BY-2 cells.

PubMed

Toyooka, Kiminori; Sato, Mayuko; Wakazaki, Mayumi; Matsuoka, Ken

2016-01-01

We developed a wide-range and high-resolution transmission electron microscope acquisition system and obtained giga-pixel images of tobacco BY-2 cells during the log and stationary phases of cell growth. We demonstrated that the distribution and ultrastructure of compartments involved in membrane traffic (i.e., Golgi apparatus, multivesicular body, and vesicle cluster) change during the log-to-stationary transition. Mitochondria, peroxisomes, and plastids were also enumerated. Electron densities of mitochondria and peroxisomes were altered during the growth-phase shift, while their numbers were reduced by nearly half. Plastid structure dramatically changed from atypical to spherical with starch granules. Nearly the same number of plastids was observed in both log and stationary phases. These results indicate that mechanisms regulating organelle populations differ from organelle to organelle.

Residual overstory density affects survival and growth of sheltered oak seedlings on the Allegheny Plateau

Treesearch

Thomas M. Schuler; Patrick Brose; Robert L. White; Robert L. White

2005-01-01

When unplanned major disturbances affect desirable mixed-oak forests, both the amount of time and viable options available for influencing the composition of postdisturbance regeneration are reduced greatly. We evaluated the use of tree shelters to protect planted northern red oak seedlings following salvage logging that resulted in a range of residual stand densities...

A Multi-temporal Analysis of Logging Impacts on Tropical Forest Structure Using Airborne Lidar Data

NASA Astrophysics Data System (ADS)

Keller, M. M.; Pinagé, E. R.; Duffy, P.; Longo, M.; dos-Santos, M. N.; Leitold, V.; Morton, D. C.

2017-12-01

The long-term impacts of selective logging on carbon cycling and ecosystem function in tropical-forests are still uncertain. Despite improvements in selective logging detection using satellite data, quantifying changes in forest structure from logging and recovery following logging is difficult using orbital data. We analyzed the dynamics of forest structure comparing logged and unlogged forests in the Eastern Brazilian Amazon (Paragominas Municipality, Pará State) using small footprint discrete return airborne lidar data acquired in 2012 and 2014. Logging operations were conducted at the 1200 ha study site from 2006 through 2013 using reduced impact logging techniques—management practices that minimize canopy and ground damage compared to more common conventional logging. Nevertheless, logging still reduced aboveground biomass by 10% to 20% in logged areas compared to intact forests. We aggregated lidar point-cloud data at spatial scales ranging from 50 m to 250 m and developed a binomial classification model based on the height distribution of lidar returns in 2012 and validated the model against the 2014 lidar acquisition. We accurately classified intact and logged forest classes compared with field data. Classification performance improved as spatial resolution increased (AUC = 0.974 at 250 m). We analyzed the differences in canopy gaps, understory damage (based on a relative density model), and biomass (estimated from total canopy height) of intact and logged classes. As expected, logging greatly increased both canopy gap formation and understory damage. However, while the area identified as canopy gap persisted for at least 8 years (from the oldest logging treatments in 2006 to the most recent lidar acquisition in 2014), the effects of ground damage were mostly erased by vigorous understory regrowth after about 5 years. The rate of new gap formation was 6 to 7 times greater in recently logged forests compared to undisturbed forests. New gaps opened at a rate of 1.8 times greater than background even 8 years following logging demonstrating the occurrence of delayed tree mortality. Our study showed that even low-intensity anthropogenic disturbances can cause persistent changes in tropical forest structure and dynamics.

Characterization of gas hydrate reservoirs by integration of core and log data in the Ulleung Basin, East Sea

USGS Publications Warehouse

Bahk, J.-J.; Kim, G.-Y.; Chun, J.-H.; Kim, J.-H.; Lee, J.Y.; Ryu, B.-J.; Lee, J.-H.; Son, B.-K.; Collett, Timothy S.

2013-01-01

Examinations of core and well-log data from the Second Ulleung Basin Gas Hydrate Drilling Expedition (UBGH2) drill sites suggest that Sites UBGH2-2_2 and UBGH2-6 have relatively good gas hydrate reservoir quality in terms of individual and total cumulative thicknesses of gas-hydrate-bearing sand (HYBS) beds. In both of the sites, core sediments are generally dominated by hemipelagic muds which are intercalated with turbidite sands. The turbidite sands are usually thin-to-medium bedded and mainly consist of well sorted coarse silt to fine sand. Anomalies in infrared core temperatures and porewater chlorinity data and pressure core measurements indicate that “gas hydrate occurrence zones” (GHOZ) are present about 68–155 mbsf at Site UBGH2-2_2 and 110–155 mbsf at Site UBGH2-6. In both the GHOZ, gas hydrates are preferentially associated with many of the turbidite sands as “pore-filling” type hydrates. The HYBS identified in the cores from Site UBGH2-6 are medium-to-thick bedded particularly in the lower part of the GHOZ and well coincident with significant high excursions in all of the resistivity, density, and velocity logs. Gas-hydrate saturations in the HYBS range from 12% to 79% with an average of 52% based on pore-water chlorinity. In contrast, the HYBS from Site UBGH2-2_2 are usually thin-bedded and show poor correlations with both of the resistivity and velocity logs owing to volume averaging effects of the logging tools on the thin HYBS beds. Gas-hydrate saturations in the HYBS range from 15% to 65% with an average of 37% based on pore-water chlorinity. In both of the sites, large fluctuations in biogenic opal contents have significant effects on the sediment physical properties, resulting in limited usage of gamma ray and density logs in discriminating sand reservoirs.

Survey of Hylobates agilis albibarbis in a logged peat-swamp forest: Sabangau catchment, Central Kalimantan.

PubMed

Buckley, Cara; Nekaris, K A I; Husson, Simon John

2006-10-01

Few data are available on gibbon populations in peat-swamp forest. In order to assess the importance of this habitat for gibbon conservation, a population of Hylobates agilis albibarbis was surveyed in the Sabangau peat-swamp forest, Central Kalimantan, Indonesia. This is an area of about 5,500 km(2) of selectively logged peat-swamp forest, which was formally gazetted as a national park during 2005. The study was conducted during June and July 2004 using auditory sampling methods. Five sample areas were selected and each was surveyed for four consecutive days by three teams of researchers at designated listening posts. Researchers recorded compass bearings of, and estimated distances to, singing groups. Nineteen groups were located. Population density is estimated to be 2.16 (+/-0.46) groups/km(2). Sightings occurring either at the listening posts or that were obtained by tracking in on calling groups yielded a mean group size of 3.4 individuals, hence individual gibbon density is estimated to be 7.4 (+/-1.59) individuals/km(2). The density estimates fall at the mid-range of those calculated for other gibbon populations, thus suggesting that peat-swamp forest is an important habitat for gibbon conservation in Borneo. A tentative extrapolation of results suggests a potential gibbon population size of 19,000 individuals within the mixed-swamp forest habitat sub-type in the Sabangau. This represents one of the largest remaining continuous populations of Bornean agile gibbons. The designation of the Sabangau forest as a national park will hopefully address the problem of illegal logging and hunting in the region. Further studies should note any difference in gibbon density post protection.

Fractal density modeling of crustal heterogeneity from the KTB deep hole

NASA Astrophysics Data System (ADS)

Chen, Guoxiong; Cheng, Qiuming

2017-03-01

Fractal or multifractal concepts have significantly enlightened our understanding of crustal heterogeneity. Much attention has focused on 1/f scaling natures of physicochemical heterogeneity of Earth crust from fractal increment perspective. In this study, fractal density model from fractal clustering point of view is used to characterize the scaling behaviors of heterogeneous sources recorded at German Continental Deep Drilling Program (KTB) main hole, and of special contribution is the local and global multifractal analysis revisited by using Haar wavelet transform (HWT). Fractal density modeling of mass accumulation generalizes the unit of rock density from integer (e.g., g/cm3) to real numbers (e.g., g/cmα), so that crustal heterogeneities with respect to source accumulation are quantified by singularity strength of fractal density in α-dimensional space. From that perspective, we found that the bulk densities of metamorphic rocks exhibit fractal properties but have a weak multifractality, decreasing with the depth. The multiscaling natures of chemical logs also have been evidenced, and the observed distinct fractal laws for mineral contents are related to their different geochemical behaviors within complex lithological context. Accordingly, scaling distributions of mineral contents have been recognized as a main contributor to the multifractal natures of heterogeneous density for low-porosity crystalline rocks. This finally allows us to use de Wijs cascade process to explain the mechanism of fractal density. In practice, the proposed local singularity analysis based on HWT is suggested as an attractive high-pass filtering to amplify weak signatures of well logs as well as to delineate microlithological changes.

2MASS wide-field extinction maps. V. Corona Australis

NASA Astrophysics Data System (ADS)

Alves, João; Lombardi, Marco; Lada, Charles J.

2014-05-01

We present a near-infrared extinction map of a large region (~870 deg2) covering the isolated Corona Australis complex of molecular clouds. We reach a 1-σ error of 0.02 mag in the K-band extinction with a resolution of 3 arcmin over the entire map. We find that the Corona Australis cloud is about three times as large as revealed by previous CO and dust emission surveys. The cloud consists of a 45 pc long complex of filamentary structure from the well known star forming Western-end (the head, N ≥ 1023 cm-2) to the diffuse Eastern-end (the tail, N ≤ 1021 cm-2). Remarkably, about two thirds of the complex both in size and mass lie beneath AV ~ 1 mag. We find that the probability density function (PDF) of the cloud cannot be described by a single log-normal function. Similar to prior studies, we found a significant excess at high column densities, but a log-normal + power-law tail fit does not work well at low column densities. We show that at low column densities near the peak of the observed PDF, both the amplitude and shape of the PDF are dominated by noise in the extinction measurements making it impractical to derive the intrinsic cloud PDF below AK < 0.15 mag. Above AK ~ 0.15 mag, essentially the molecular component of the cloud, the PDF appears to be best described by a power-law with index -3, but could also described as the tail of a broad and relatively low amplitude, log-normal PDF that peaks at very low column densities. FITS files of the extinction maps are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/565/A18

[The role of CD14 promoter - 159 C-> T polymorphism on changes of serum lipid ratios induced by high-carbohydrate/low-fat diets in healthy Chinese Han youth].

PubMed

Jiang, Zhe; Gong, Ren-rong; Li, Yuan-hao; Fan, Mei; Fang, Ding-zhi

2012-05-01

To investigate the role of CD14 promoter - 159 C-> T polymorphism on ratios of serum lipids and its interaction on the ratios with a high-carbohydrate/low-fat (HC/LF) diet in a young and healthy Chinese Han population. After a washout diet for seven days, fifty six healthy young subjects (22.89 +/- 1.80 years) were given the HC/LF diet for six days. Twelve-hour fasting venous blood samples were collected in the mornings of the first, the eighth and the fourteenth days. The serum lipid profiles and the CD14 -159 C->T polymorphism were analyzed. The ratios of triglyceride/high density lipoprotein-cholesterol (TG/HDL-c), log (TG/HDL-c), total cholesterol/high density lipoprotein-cholesterol (TC/HDL-c) and low density lipoprotein-cholesterol/high density lipoprotein-cholesterol (LDL-c/HDL-c) were calculated. The male carriers of the C allele had significantly higher TG/HDL-c and log (TG/HDL-c) than the female carriers at baseline, after the washout diet and after the HC/LF diet, higher TC/HDL-c at baseline and after the washout diet, and higher LDL-c/HDL-c only after the washout diet. The female subjects with the TT genotype had higher TG/HDL-c and log (TG/HDL-c) than the female carriers of the C allele at baseline, after the washout diet and after the HC/LF diet, higher LDL-c/HDL-c at baseline and after the HC/LF diet, and higher TC/HDL-c only after the washout diet. Compared with that before the HC/LF diet, TC/HDL-c was significantly decreased after the HC/LF diet regardless of gender and the genotype of the CD14 -159 polymorphism. LDL-c/HDL-c was significantly decreased in both the male and female carriers of the C allele. TG/HDL-c and log (TG/HDL-c) were significantly increased only in the female carriers of the C allele. In the subjects with C allele, the HC/LF diet is a minor factor and its effects on the lipid ratios can be masked by the effects of the C allele at CD14 -159. The interaction between the HC/LF diet and the C allele at CD14 -159 can decrease LDL-c/HDL-c in both males and females and increase TG/ HDL-c and log (TG/HDL-c) in the females.

The Fractal Behavior of Crystal Distribution of la Gloria Pluton, Chile

NASA Astrophysics Data System (ADS)

Gutiérrez, F. J.; Payacán, I. J.; Pasten, D.; Aravena, A.; Gelman, S. E.; Bachmann, O.; Parada, M. A.

2013-12-01

We utilize fractal analysis to study the spatial distributions of crystals in a 10 Ma granitic intrusion (La Gloria pluton) located in the central Chilean Andes. Previous work determined the crystal size distribution (CSD) and anisotropy of magnetic susceptibility (AMS) tensors throughout this pluton. Using orthogonal thin sections oriented along the AMS tensor axes, we have applied fractal analysis in three magmatic crystal families: plagioclase, ferromagnesian minerals (biotite and amphibole), and Fe-Ti oxides (magnetite with minor ilmenite). We find that plagioclase and ferromagnesian minerals have a Semi-logarithmic CSD (S-CSD), given by: log(n/n0)= -L/C (1) where n [mm-4], n0 [mm-4], L [mm] and C [mm] are crystal density, intercept (nucleation density; L=0), size of crystals (three axes) and characteristic length, respectively. In contrast, Fe-Ti oxides have a Fractal CSD (F-CSD, power law size distribution), given by: log(n)= - Dn log(L) + n1 (2) where Dn and n1 [log(mm-4)] are a non-dimensional proportionality constant and the logarithm of the initial crystallization density (n1 = log(n(L=1 mm))), respectively. Finally, we calculate the fractal dimension (D0) by applying the box-counting method on each crystal thin section image, using: log(N) = -D0 log(ɛ) (3) where N and ɛ are the number of boxes occupied by minerals and the length of the square box, respectively. Results indicate that D0 values (eq. 3) are well defined for all minerals, and are higher for plagioclase than for ferromagnesian minerals and lowest for Fe-Ti oxides. D0 values are correlated with n0 and -1/C for S-CSD (eq. 1), and with n1 values for F-CSD (eq. 2). These correlations between fractal dimensions with CSD parameters suggest crystal growth follows a fractal behaviour in magmatic systems. Fractal behaviour of CSD means that the spatial distribution of crystals follows an all-scale pattern as part of a self-organized magmatic system. We interpret S-CSD of plagioclase and ferromagnesian minerals as consequence of early to intermediate crystal growth, whereas F-CSD of magnetite is also a consequence of late magmatic equilibration by increasing of fine magnetite crystals (e.g. reaction of hornblende to magnetite plus actinolite, biotite and titanite). Acknowledgments. This research has been developed by the FONDECYT N°11100241 and PBCT-PDA07 projects granted by CONICYT (Chilean National Commission for Science and Technology). I.P. is supported by CONICYT magister grant N°22130729. F.G. and I.P. thank to FONDAP N°15090013 for supporting during the conference. D.P. acknowledges FONDECYT grant N° 3120237.

Snake River Plain FORGE Well Data for INEL-1

DOE Data Explorer

Robert Podgorney

1979-03-01

Well data for the INEL-1 well located in eastern Snake River Plain, Idaho. This data collection includes caliper logs, lithology reports, borehole logs, temperature at depth data, neutron density and gamma data, full color logs, fracture analysis, photos, and rock strength parameters for the INEL-1 well. This collection of data has been assembled as part of the site characterization data used to develop the conceptual geologic model for the Snake River Plain site in Idaho, as part of phase 1 of the Frontier Observatory for Research in Geothermal Energy (FORGE) initiative. They were assembled by the Snake River Geothermal Consortium (SRGC), a team of collaborators that includes members from national laboratories, universities, industry, and federal agencies, lead by the Idaho National Laboratory (INL).

Stan : A Probabilistic Programming Language

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carpenter, Bob; Gelman, Andrew; Hoffman, Matthew D.

Stan is a probabilistic programming language for specifying statistical models. A Stan program imperatively defines a log probability function over parameters conditioned on specified data and constants. As of version 2.14.0, Stan provides full Bayesian inference for continuous-variable models through Markov chain Monte Carlo methods such as the No-U-Turn sampler, an adaptive form of Hamiltonian Monte Carlo sampling. Penalized maximum likelihood estimates are calculated using optimization methods such as the limited memory Broyden-Fletcher-Goldfarb-Shanno algorithm. Stan is also a platform for computing log densities and their gradients and Hessians, which can be used in alternative algorithms such as variational Bayes, expectationmore » propagation, and marginal inference using approximate integration. To this end, Stan is set up so that the densities, gradients, and Hessians, along with intermediate quantities of the algorithm such as acceptance probabilities, are easily accessible. Stan can also be called from the command line using the cmdstan package, through R using the rstan package, and through Python using the pystan package. All three interfaces support sampling and optimization-based inference with diagnostics and posterior analysis. rstan and pystan also provide access to log probabilities, gradients, Hessians, parameter transforms, and specialized plotting.« less

A Mini-BAL Outflow at 900 pc from the Central Source: VLT/X-shooter Observations

NASA Astrophysics Data System (ADS)

Xu, Xinfeng; Arav, Nahum; Miller, Timothy; Benn, Chris

2018-05-01

We determine the physical conditions and location of the outflow material seen in the mini-BAL quasar SDSS J1111+1437 (z = 2.138). These results are based on the analysis of a high S/N, medium-resolution VLT/X-shooter spectrum. The main outflow component spans the velocity range ‑1500 to ‑3000 km s‑1 and has detected absorption troughs from both high-ionization species: C IV, N V, O VI, Si IV, P V, and S IV; and low-ionization species: H I, C II, Mg II, Al II, Al III, Si II, and Si III. Measurements of these troughs allow us to derive an accurate photoionization solution for this absorption component: a hydrogen column density, {log}({N}{{H}})={21.47}-0.27+0.21 cm‑2 and ionization parameter, {log}({U}{{H}})=-{1.23}-0.25+0.20. Troughs produced from the ground and excited states of S IV combined with the derived {U}{{H}} value allow us to determine an electron number density of {log}({n}{{e}})={3.62}-0.11+0.09 cm‑3 and to obtain the distance of the ionized gas from the central source: R={880}-260+210 pc.

Stan : A Probabilistic Programming Language

DOE PAGES

Carpenter, Bob; Gelman, Andrew; Hoffman, Matthew D.; ...

2017-01-01

Stan is a probabilistic programming language for specifying statistical models. A Stan program imperatively defines a log probability function over parameters conditioned on specified data and constants. As of version 2.14.0, Stan provides full Bayesian inference for continuous-variable models through Markov chain Monte Carlo methods such as the No-U-Turn sampler, an adaptive form of Hamiltonian Monte Carlo sampling. Penalized maximum likelihood estimates are calculated using optimization methods such as the limited memory Broyden-Fletcher-Goldfarb-Shanno algorithm. Stan is also a platform for computing log densities and their gradients and Hessians, which can be used in alternative algorithms such as variational Bayes, expectationmore » propagation, and marginal inference using approximate integration. To this end, Stan is set up so that the densities, gradients, and Hessians, along with intermediate quantities of the algorithm such as acceptance probabilities, are easily accessible. Stan can also be called from the command line using the cmdstan package, through R using the rstan package, and through Python using the pystan package. All three interfaces support sampling and optimization-based inference with diagnostics and posterior analysis. rstan and pystan also provide access to log probabilities, gradients, Hessians, parameter transforms, and specialized plotting.« less

Ova fecundity in Scottish Atlantic salmon Salmo salar: predictions, selective forces and causal mechanisms.

PubMed

Bacon, P J; MacLean, J C; Malcolm, I A; Gurney, W S C

2012-08-01

Ova fecundities of Scottish Atlantic salmon Salmo salar, predicted from log(10) regression of ova numbers and female fork length (L(F)), differed widely between upland and lowland stocks within the same river, whereas sea-age, river and year factors had insignificant effects on fecundity once L(F) was accounted for. For upland fish, the relationship between log(10)L(F) and log(10) ova mass (M(O)) was stable between two datasets collected 40 years apart. Although upland and lowland females both produced comparable log(10)M(O) (log(10)L(F))(-1), lowland females partitioned this into 45% more, but smaller ova, whereas upland females produced fewer, but larger, eggs. The possible causes and implications of this are discussed for evolutionary perspectives (lifetime production), population structure (local tributary v. large catchments; environmental effects), population dynamics and stability (density-dependent control mechanisms) and fisheries management (stock-recruitment; short and long-term stock sustainability). © 2012 Marine Scotland. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

Digital signal processing and interpretation of full waveform sonic log for well BP-3-USGS, Great Sand Dunes National Park and Preserve, Alamosa County, Colorado

USGS Publications Warehouse

Burke, Lauri

2011-01-01

Along the Great Sand Dunes National Park and Preserve boundary (fig. 1), 10 monitoring wells were drilled by the National Park Service in order to monitor water flow in an unconfined aquifer spanning the park boundary. Adjacent to the National Park Service monitoring well named Boundary Piezometer Well No. 3, or BP-3, the U.S. Geological Survey (USGS) drilled the BP-3-USGS well. This well was drilled from September 14 through 17, 2009, to a total depth of 99.4 meters (m) in order to acquire additional subsurface information. The BP-3-USGS well is located at lat 37 degrees 43'18.06' and long -105 degrees 43'39.30' at a surface elevation of 2,301 m. Approximately 23 m of core was recovered beginning at a depth of 18 m. Drill cuttings were also recovered. The wireline geophysical logs acquired in the well include natural gamma ray, borehole caliper, temperature, full waveform sonic, density, neutron, resistivity, and induction logs. The BP-3-USGS well is now plugged and abandoned. This report details the full waveform digital signal processing methodology and the formation compressional-wave velocities determined for the BP-3-USGS well. These velocity results are compared to several velocities that are commonly encountered in the subsurface. The density log is also discussed in context of these formation velocities.

Fuels planning: science synthesis and integration; environmental consequences fact sheet 14: Fuels reduction and compaction

Treesearch

Deborah Page-Dumroese

2005-01-01

Moving equipment and logs over the surface of forest soils causes gouges and ruts in the mineral soil, displaces organic matter, and can cause compaction. Compaction is the component of soil productivity most influenced by forest management, but the degree to which soils may be compacted depends on initial soil bulk density. For example, low bulk density soils (such as...

Rain Splash Dispersal of Gibberella zeae Within Wheat Canopies in Ohio.

PubMed

Paul, P A; El-Allaf, S M; Lipps, P E; Madden, L V

2004-12-01

ABSTRACT Rain splash dispersal of Gibberella zeae, causal agent of Fusarium head blight of wheat, was investigated in field studies in Ohio between 2001 and 2003. Samplers placed at 0, 30, and 100 cm above the soil surface were used to collect rain splash in wheat fields with maize residue on the surface and fields with G. zeae-infested maize kernels. Rain splash was collected during separate rain episodes throughout the wheat-growing seasons. Aliquots of splashed rain were transferred to petri dishes containing Komada's selective medium, and G. zeae was identified based on colony and spore morphology. Dispersed spores were measured in CFU/ml. Intensity of splashed rain was highest at 100 cm and ranged from 0.2 to 10.2 mm h(-1), depending on incident rain intensity and sampler height. Spores were recovered from splash samples at all heights in both locations for all sampled rain events. Both macroconidia and ascospores were found based on microscopic examination of random samples of splashed rain. Spore density and spore flux density per rain episode ranged from 0.4 to 40.9 CFU cm(-2) and 0.4 to 84.8 CFU cm(-2) h(-1), respectively. Spore flux density was higher in fields with G. zeae-infested maize kernels than in fields with maize debris, and generally was higher at 0 and 30 cm than at 100 cm at both locations. However, on average, spore flux density was only 30% lower at 100 cm (height of wheat spikes) than at the other heights. The log of spore flux density was linearly related to the log of splashed rain intensity and the log of incident rain intensity. The regression slopes were not significantly affected by year, location, height, and their interactions, but the intercepts were significantly affected by both sampler height and location. Thus, our results show that spores of G. zeae were consistently splash dispersed to spike heights within wheat canopies, and splashed rain intensity and spore flux density could be predicted based on incident rain intensity in order to estimate inoculum dispersal within the wheat canopy.

A cross-site comparison of methods used for hydrogeologic characterization of the Galena-Platteville aquifer in Illinois and Wisconsin, with examples from selected Superfund sites

USGS Publications Warehouse

Kay, Robert T.; Mills, Patrick C.; Dunning, Charles P.; Yeskis, Douglas J.; Ursic, James R.; Vendl, Mark

2004-01-01

The effectiveness of 28 methods used to characterize the fractured Galena-Platteville aquifer at eight sites in northern Illinois and Wisconsin is evaluated. Analysis of government databases, previous investigations, topographic maps, aerial photographs, and outcrops was essential to understanding the hydrogeology in the area to be investigated. The effectiveness of surface-geophysical methods depended on site geology. Lithologic logging provided essential information for site characterization. Cores were used for stratigraphy and geotechnical analysis. Natural-gamma logging helped identify the effect of lithology on the location of secondary- permeability features. Caliper logging identified large secondary-permeability features. Neutron logs identified trends in matrix porosity. Acoustic-televiewer logs identified numerous secondary-permeability features and their orientation. Borehole-camera logs also identified a number of secondary-permeability features. Borehole ground-penetrating radar identified lithologic and secondary-permeability features. However, the accuracy and completeness of this method is uncertain. Single-point-resistance, density, and normal resistivity logs were of limited use. Water-level and water-quality data identified flow directions and indicated the horizontal and vertical distribution of aquifer permeability and the depth of the permeable features. Temperature, spontaneous potential, and fluid-resistivity logging identified few secondary-permeability features at some sites and several features at others. Flowmeter logging was the most effective geophysical method for characterizing secondary-permeability features. Aquifer tests provided insight into the permeability distribution, identified hydraulically interconnected features, the presence of heterogeneity and anisotropy, and determined effective porosity. Aquifer heterogeneity prevented calculation of accurate hydraulic properties from some tests. Different methods, such as flowmeter logging and slug testing, occasionally produced different interpretations. Aquifer characterization improved with an increase in the number of data points, the period of data collection, and the number of methods used.

Petrophysical approach for S-wave velocity prediction based on brittleness index and total organic carbon of shale gas reservoir: A case study from Horn River Basin, Canada

NASA Astrophysics Data System (ADS)

Kim, Taeyoun; Hwang, Seho; Jang, Seonghyung

2017-01-01

When finding the "sweet spot" of a shale gas reservoir, it is essential to estimate the brittleness index (BI) and total organic carbon (TOC) of the formation. Particularly, the BI is one of the key factors in determining the crack propagation and crushing efficiency for hydraulic fracturing. There are several methods for estimating the BI of a formation, but most of them are empirical equations that are specific to particular rock types. We estimated the mineralogical BI based on elemental capture spectroscopy (ECS) log and elastic BI based on well log data, and we propose a new method for predicting S-wave velocity (VS) using mineralogical BI and elastic BI. The TOC is related to the gas content of shale gas reservoirs. Since it is difficult to perform core analysis for all intervals of shale gas reservoirs, we make empirical equations for the Horn River Basin, Canada, as well as TOC log using a linear relation between core-tested TOC and well log data. In addition, two empirical equations have been suggested for VS prediction based on density and gamma ray log used for TOC analysis. By applying the empirical equations proposed from the perspective of BI and TOC to another well log data and then comparing predicted VS log with real VS log, the validity of empirical equations suggested in this paper has been tested.

Clinical benefit from pharmacological elevation of high-density lipoprotein cholesterol: meta-regression analysis.

PubMed

Hourcade-Potelleret, F; Laporte, S; Lehnert, V; Delmar, P; Benghozi, Renée; Torriani, U; Koch, R; Mismetti, P

2015-06-01

Epidemiological evidence that the risk of coronary heart disease is inversely associated with the level of high-density lipoprotein cholesterol (HDL-C) has motivated several phase III programmes with cholesteryl ester transfer protein (CETP) inhibitors. To assess alternative methods to predict clinical response of CETP inhibitors. Meta-regression analysis on raising HDL-C drugs (statins, fibrates, niacin) in randomised controlled trials. 51 trials in secondary prevention with a total of 167,311 patients for a follow-up >1 year where HDL-C was measured at baseline and during treatment. The meta-regression analysis showed no significant association between change in HDL-C (treatment vs comparator) and log risk ratio (RR) of clinical endpoint (non-fatal myocardial infarction or cardiac death). CETP inhibitors data are consistent with this finding (RR: 1.03; P5-P95: 0.99-1.21). A prespecified sensitivity analysis by drug class suggested that the strength of relationship might differ between pharmacological groups. A significant association for both statins (p<0.02, log RR=-0.169-0.0499*HDL-C change, R(2)=0.21) and niacin (p=0.02, log RR=1.07-0.185*HDL-C change, R(2)=0.61) but not fibrates (p=0.18, log RR=-0.367+0.077*HDL-C change, R(2)=0.40) was shown. However, the association was no longer detectable after adjustment for low-density lipoprotein cholesterol for statins or exclusion of open trials for niacin. Meta-regression suggested that CETP inhibitors might not influence coronary risk. The relation between change in HDL-C level and clinical endpoint may be drug dependent, which limits the use of HDL-C as a surrogate marker of coronary events. Other markers of HDL function may be more relevant. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Structural and physical property characterization in the Wenchuan earthquake Fault Scientific Drilling project — hole 1 (WFSD-1)

NASA Astrophysics Data System (ADS)

Li, Haibing; Xu, Zhiqin; Niu, Yixiong; Kong, Guangsheng; Huang, Yao; Wang, Huan; Si, Jialiang; Sun, Zhiming; Pei, Junling; Gong, Zheng; Chevalier, Marie-Luce; Liu, Dongliang

2014-04-01

The Wenchuan earthquake Fault Scientific Drilling project (WFSD) started right after the 2008 Mw 7.9 Wenchuan earthquake to investigate its faulting mechanism. Hole 1 (WFSD-1) reached the Yingxiu-Beichuan fault (YBF), and core samples were recovered from 32 to 1201.15 m-depth. Core investigation and a suite of geophysical downhole logs (including P-wave velocity, natural gamma ray, self-potential, resistivity, density, porosity, temperature, magnetic susceptibility and ultrasound borehole images) were acquired in WFSD-1. Integrated studies of cores and logs facilitate qualitative and quantitative comparison of the structures and physical properties of rocks. Logging data revealed that the geothermal gradient of the volcanic Pengguan complex (above 585.75 m) is 1.85 °C/100 m, while that of the sedimentary Xujiahe Formation (below 585.75 m) is 2.15 °C/100 m. In general, natural gamma ray, resistivity, density, porosity, P-wave velocity and magnetic susceptibility primarily depend on the rock lithology. All major fault zones are characterized by high magnetic susceptibility, low density and high porosity, with mostly low resistivity, high natural gamma ray and sound wave velocity. The high magnetic susceptibility values most likely result from the transformation of magnetic minerals by frictional heating due to the earthquake. The YBF exposed in WFSD-1 can be subdivided into five different parts based on different logging responses, each of them corresponding to certain fault-rocks. The high gamma radiation, porosity and P-wave velocity, as well as low resistivity and temperature anomalies indicate that the Wenchuan earthquake fault zone is located at 585.75-594.5 m-depth, with an average inclination and dip angle of N305° and 71°, respectively. The fact that the fracture directions in the hanging wall and footwall are different suggests that their stress field direction is completely different, implying that the upper Pengguan complex may not be local.

An Equivalent Fracture Modeling Method

NASA Astrophysics Data System (ADS)

Li, Shaohua; Zhang, Shujuan; Yu, Gaoming; Xu, Aiyun

2017-12-01

3D fracture network model is built based on discrete fracture surfaces, which are simulated based on fracture length, dip, aperture, height and so on. The interesting area of Wumishan Formation of Renqiu buried hill reservoir is about 57 square kilometer and the thickness of target strata is more than 2000 meters. In addition with great fracture density, the fracture simulation and upscaling of discrete fracture network model of Wumishan Formation are very intense computing. In order to solve this problem, a method of equivalent fracture modeling is proposed. First of all, taking the fracture interpretation data obtained from imaging logging and conventional logging as the basic data, establish the reservoir level model, and then under the constraint of reservoir level model, take fault distance analysis model as the second variable, establish fracture density model by Sequential Gaussian Simulation method. Increasing the width, height and length of fracture, at the same time decreasing its density in order to keep the similar porosity and permeability after upscaling discrete fracture network model. In this way, the fracture model of whole interesting area can be built within an accepted time.

DOE Office of Scientific and Technical Information (OSTI.GOV)

HUBER, J.H.

An Enraf Densitometer is installed on tank 241-AY-102. The Densitometer will frequently be tasked to obtain and log density profiles. The activity can be effected a number of ways. Enraf Incorporated provides a software package called ''Logger18'' to its customers for the purpose of in-shop testing of their gauges. Logger18 is capable of accepting an input file which can direct the gauge to obtain a density profile for a given tank level and bottom limit. Logger18 is a complex, DOS based program which will require trained technicians and/or tank farm entries to obtain the data. ALARA considerations have prompted themore » development of a more user-friendly, computer-based interface to the Enraf densitometers. This document records the plan by which this new Enraf data acquisition software will be developed, reviewed, verified, and released. This plan applies to the development and implementation of a one-time-use software program, which will be called ''Enraf Control Panel.'' The software will be primarily used for remote operation of Enraf Densitometers for the purpose of obtaining and logging tank product density profiles.« less

Physics of Inference

NASA Astrophysics Data System (ADS)

Toroczkai, Zoltan

Jaynes's maximum entropy method provides a family of principled models that allow the prediction of a system's properties as constrained by empirical data (observables). However, their use is often hindered by the degeneracy problem characterized by spontaneous symmetry breaking, where predictions fail. Here we show that degeneracy appears when the corresponding density of states function is not log-concave, which is typically the consequence of nonlinear relationships between the constraining observables. We illustrate this phenomenon on several examples, including from complex networks, combinatorics and classical spin systems (e.g., Blume-Emery-Griffiths lattice-spin models). Exploiting these nonlinear relationships we then propose a solution to the degeneracy problem for a large class of systems via transformations that render the density of states function log-concave. The effectiveness of the method is demonstrated on real-world network data. Finally, we discuss the implications of these findings on the relationship between the geometrical properties of the density of states function and phase transitions in spin systems. Supported in part by Grant No. FA9550-12-1-0405 from AFOSR/DARPA and by Grant No. HDTRA 1-09-1-0039 from DTRA.

Plant Invasions in China – Challenges and Chances

PubMed Central

Axmacher, Jan C.; Sang, Weiguo

2013-01-01

Invasive species cause serious environmental and economic harm and threaten global biodiversity. We set out to investigate how quickly invasive plant species are currently spreading in China and how their resulting distribution patterns are linked to socio-economic and environmental conditions. A comparison of the invasive plant species density (log species/log area) reported in 2008 with current data shows that invasive species were originally highly concentrated in the wealthy, southeastern coastal provinces of China, but they are currently rapidly spreading inland. Linear regression models based on the species density and turnover of invasive plants as dependent parameters and principal components representing key socio-economic and environmental parameters as predictors indicate strong positive links between invasive plant density and the overall phytodiversity and associated climatic parameters. Principal components representing socio-economic factors and endemic plant density also show significant positive links with invasive plant density. Urgent control and eradication measures are needed in China's coastal provinces to counteract the rapid inland spread of invasive plants. Strict controls of imports through seaports need to be accompanied by similarly strict controls of the developing horticultural trade and underpinned by awareness campaigns for China's increasingly affluent population to limit the arrival of new invaders. Furthermore, China needs to fully utilize its substantial native phytodiversity, rather than relying on exotics, in current large-scale afforestation projects and in the creation of urban green spaces. PMID:23691164

Relationship between the column density distribution and evolutionary class of molecular clouds as viewed by ATLASGAL

NASA Astrophysics Data System (ADS)

Abreu-Vicente, J.; Kainulainen, J.; Stutz, A.; Henning, Th.; Beuther, H.

2015-09-01

We present the first study of the relationship between the column density distribution of molecular clouds within nearby Galactic spiral arms and their evolutionary status as measured from their stellar content. We analyze a sample of 195 molecular clouds located at distances below 5.5 kpc, identified from the ATLASGAL 870 μm data. We define three evolutionary classes within this sample: starless clumps, star-forming clouds with associated young stellar objects, and clouds associated with H ii regions. We find that the N(H2) probability density functions (N-PDFs) of these three classes of objects are clearly different: the N-PDFs of starless clumps are narrowest and close to log-normal in shape, while star-forming clouds and H ii regions exhibit a power-law shape over a wide range of column densities and log-normal-like components only at low column densities. We use the N-PDFs to estimate the evolutionary time-scales of the three classes of objects based on a simple analytic model from literature. Finally, we show that the integral of the N-PDFs, the dense gas mass fraction, depends on the total mass of the regions as measured by ATLASGAL: more massive clouds contain greater relative amounts of dense gas across all evolutionary classes. Appendices are available in electronic form at http://www.aanda.org

Dental plaque microcosm response to bonding agents containing quaternary ammonium methacrylates with different chain lengths and charge densities

PubMed Central

Zhou, Han; Li, Fang; Weir, Michael D.; Xu, Hockin H.K.

2013-01-01

Objectives Antibacterial bonding agents are promising to combat bacteria and caries at tooth-restoration margins. The objectives of this study were to incorporate new quaternary ammonium methacrylates (QAMs) to bonding agent and determine the effects of alkyl chain length (CL) and quaternary amine charge density on dental plaque microcosm bacteria response for the first time. Methods Six QAMs were synthesized with CL = 3, 6, 9, 12, 16, 18. Each QAM was incorporated into Scotchbond Multi-purpose (SBMP). To determine the charge density effect, dimethylaminododecyl methacrylate (DMAHDM, CL = 16) was mixed into SBMP at mass fraction = 0%, 2.5%, 5%, 7.5%, 10%. Charge density was measured using a fluorescein dye method. Dental plaque microcosm using saliva from ten donors was tested. Bacteria were inoculated on resins. Early-attachment was tested at 4 hours. Biofilm colony-forming units (CFU) were measured at 2 days. Results Incorporating QAMs into SBMP reduced bacteria early-attachment. Microcosm biofilm CFU for CL = 16 was 4 log lower than SBMP control. Charge density of bonding agent increased with DMAHDM content. Bacteria early-attachment decreased with increasing charge density. Biofilm CFU at 10% DMAHDM was reduced by 4 log. The killing effect was similarly-strong against total microorganisms, total streptococci, and mutans streptococci. Conclusions Increasing alkyl chain length and charge density of bonding agent was shown for the first time to decrease microcosm bacteria attachment and reduce biofilm CFU by 4 orders of magnitude. Novel antibacterial resins with tailored chain length and charge density are promising for wide applications in bonding, cements, sealants and composites to inhibit biofilms and caries. PMID:23948394

Dental plaque microcosm response to bonding agents containing quaternary ammonium methacrylates with different chain lengths and charge densities.

PubMed

Zhou, Han; Li, Fang; Weir, Michael D; Xu, Hockin H K

2013-11-01

Antibacterial bonding agents are promising to combat bacteria and caries at tooth-restoration margins. The objectives of this study were to incorporate new quaternary ammonium methacrylates (QAMs) to bonding agent and determine the effects of alkyl chain length (CL) and quaternary amine charge density on dental plaque microcosm bacteria response for the first time. Six QAMs were synthesized with CL=3, 6, 9, 12, 16, 18. Each QAM was incorporated into Scotchbond multi-purpose (SBMP). To determine the charge density effect, dimethylaminododecyl methacrylate (DMAHDM, CL=16) was mixed into SBMP at mass fraction=0%, 2.5%, 5%, 7.5%, 10%. Charge density was measured using a fluorescein dye method. Dental plaque microcosm using saliva from ten donors was tested. Bacteria were inoculated on resins. Early-attachment was tested at 4h. Biofilm colony-forming units (CFU) were measured at 2 days. Incorporating QAMs into SBMP reduced bacteria early-attachment. Microcosm biofilm CFU for CL=16 was 4 log lower than SBMP control. Charge density of bonding agent increased with DMAHDM content. Bacteria early-attachment decreased with increasing charge density. Biofilm CFU at 10% DMAHDM was reduced by 4 log. The killing effect was similarly-strong against total microorganisms, total streptococci, and mutans streptococci. Increasing alkyl chain length and charge density of bonding agent was shown for the first time to decrease microcosm bacteria attachment and reduce biofilm CFU by 4 orders of magnitude. Novel antibacterial resins with tailored chain length and charge density are promising for wide applications in bonding, cements, sealants and composites to inhibit biofilms and caries. Copyright © 2013 Elsevier Ltd. All rights reserved.

Influence of logging on the effects of wildfire in Siberia

NASA Astrophysics Data System (ADS)

Kukavskaya, E. A.; Buryak, L. V.; Ivanova, G. A.; Conard, S. G.; Kalenskaya, O. P.; Zhila, S. V.; McRae, D. J.

2013-12-01

The Russian boreal zone supports a huge terrestrial carbon pool. Moreover, it is a tremendous reservoir of wood products concentrated mainly in Siberia. The main natural disturbance in these forests is wildfire, which modifies the carbon budget and has potentially important climate feedbacks. In addition, both legal and illegal logging increase landscape complexity and affect burning conditions and fuel consumption. We investigated 100 individual sites with different histories of logging and fire on a total of 23 study areas in three different regions of Siberia to evaluate the impacts of fire and logging on fuel loads, carbon emissions, and tree regeneration in pine and larch forests. We found large variations of fire and logging effects among regions depending on growing conditions and type of logging activity. Logged areas in the Angara region had the highest surface and ground fuel loads (up to 135 t ha-1), mainly due to logging debris. This resulted in high carbon emissions where fires occurred on logged sites (up to 41 tC ha-1). The Shushenskoe/Minusinsk and Zabaikal regions are characterized by better slash removal and a smaller amount of carbon emitted to the atmosphere during fires. Illegal logging, which is widespread in the Zabaikal region, resulted in an increase in fire hazard and higher carbon emissions than legal logging. The highest fuel loads (on average 108 t ha-1) and carbon emissions (18-28 tC ha-1) in the Zabaikal region are on repeatedly burned unlogged sites where trees fell on the ground following the first fire event. Partial logging in the Shushenskoe/Minusinsk region has insufficient impact on stand density, tree mortality, and other forest conditions to substantially increase fire hazard or affect carbon stocks. Repeated fires on logged sites resulted in insufficient tree regeneration and transformation of forest to grasslands. We conclude that negative impacts of fire and logging on air quality, the carbon cycle, and ecosystem sustainability could be decreased by better slash removal in the Angara region, removal of trees killed by fire in the Zabaikal region, and tree planting after fires in drier conditions where natural regeneration is hampered by soil overheating and grass proliferation.

M-dwarf exoplanet surface density distribution. A log-normal fit from 0.07 to 400 AU

NASA Astrophysics Data System (ADS)

Meyer, Michael R.; Amara, Adam; Reggiani, Maddalena; Quanz, Sascha P.

2018-04-01

Aims: We fit a log-normal function to the M-dwarf orbital surface density distribution of gas giant planets, over the mass range 1-10 times that of Jupiter, from 0.07 to 400 AU. Methods: We used a Markov chain Monte Carlo approach to explore the likelihoods of various parameter values consistent with point estimates of the data given our assumed functional form. Results: This fit is consistent with radial velocity, microlensing, and direct-imaging observations, is well-motivated from theoretical and phenomenological points of view, and predicts results of future surveys. We present probability distributions for each parameter and a maximum likelihood estimate solution. Conclusions: We suggest that this function makes more physical sense than other widely used functions, and we explore the implications of our results on the design of future exoplanet surveys.

Flux-limited sample of Galactic carbon stars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Claussen, M.J.; Kleinmann, S.G.; Joyce, R.R.

Published observational data (including IRAS observations) for a flux-limited sample of 215 Galactic carbon stars (CSs) selected from the 2-micron sky survey of Neugebauer and Leighton (1969) are compiled in extensive tables and graphs and analyzed statistically. The sample is found to penetrate a volume of radius 1.5 kpc, and the local CS space density and surface density are calculated as log rho0 (per cu kpc) = 2.0 + or - 0.4 and log N (per sq kpc) = 1.6 + or - 0.2, respectively. The total Galactic mass-return rate from these CSs is estimated as 0.013 solar mass/yr, implyingmore » a time scale of 0.1-1 Myr for the CS evolutionary phase and a mass of 1.2-1.6 solar mass for the (probably F-type) main-seqence progenitors of CSs. 81 references.« less

On the surface density of X-ray selected BL Lacertae objects

NASA Technical Reports Server (NTRS)

Maccacaro, T.; Gioia, I. M.; Maccagni, D.; Stocke, J. T.

1984-01-01

Only a handful of BL Lac objects have been found as a result of systematic optical identification of serendipitous Einstein X-ray sources. By combining the data from two flux-limited complete X-ray surveys (the HEAO 1 A-2 and the Einstein Observatory Medium Sensitivity Survey) the surface density of X-ray emitting BL Lac objects is evaluated as a function of their X-ray flux. It is found that a single power law is not an acceptable representation of the BL Lac objects' X-ray log N-log S. The number-flux relationship is consistent with the Euclidean slope at 'high' flux levels but shows a drastic flattnring below fluxes of the order of 10 to the -12th ergs per sq cm/s. The implications of this result are briefly discussed with respect to the luminosity function, the cosmological evolution, and the X-ray to optical flux ratio in BL Lac objects.

Changes in tree density do not influence epicormic branching of yellow-poplar

Treesearch

H. Clay Smith

1977-01-01

Epicormic branching was studied in a West Virginia yellow-poplar stand thinned to various tree density levels. Study trees in the 55- to 60-year-old second-growth stand were primarily codominant in crown class with 32 to 48 feet of log height. Eight-year study results indicated that yellow-poplar trees in this age class and locale could be thinned without serious loss...

Woody biomass size reduction with selective material orientation

DOE PAGES

Dooley, James H.; Lanning, David N.; Lanning, Christopher J.

2013-01-01

Roundwood logs from forests and energy plantations must be chipped, ground, or otherwise comminuted into small particles prior to conversion to solid or liquid biofuels. Rotary veneer followed by cross-grain shearing is demonstrated to be a novel and low energy consuming method for primary breakdown of logs into a raw material having high transport and storage density. Processing of high moisture raw logs into 2.5 – 4.2 mm particles prior to drying or conversion consumes less than 20% of the energy required for achieving similar particle size with hammer mills while producing a more uniform particle shape and size. Asmore » a result, energy savings from the proposed method may reduce the comminution cost of woody feedstocks by more than half.« less

Binary data corruption due to a Brownian agent

NASA Astrophysics Data System (ADS)

Newman, T. J.; Triampo, Wannapong

1999-05-01

We introduce a model of binary data corruption induced by a Brownian agent (active random walker) on a d-dimensional lattice. A continuum formulation allows the exact calculation of several quantities related to the density of corrupted bits ρ, for example, the mean of ρ and the density-density correlation function. Excellent agreement is found with the results from numerical simulations. We also calculate the probability distribution of ρ in d=1, which is found to be log normal, indicating that the system is governed by extreme fluctuations.

Determining water saturation in diatomite using wireline logs, Lost Hills field, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bilodeau, B.J.

1995-12-31

There is a long-held paradigm in the California oil industry that wireline log evaluation does not work in Monterey Formation lithologies. This study demonstrates that it is possible to calculate accurate oil saturation from wireline log data in the diatomite reservoir at Lost Hills field, California. The ability to calculate simple but accurate oil saturation is important because it allows field management teams to map pay, plan development and waterflood programs, and make estimates of reserves more accurate than those based on core information alone. Core data from eight wells were correlated with modern resistivity and porosity logs, incorporating moremore » than 2000 ft of reservoir section. Porosity was determined from bulk density and water saturation was determined using the Archie equation. Crossplots of corrected core oil saturation versus Archie oil saturation (1-S{sub w}) confirm the accuracy of the algorithm. Improvements in the accuracy and precision of the calculated oil saturation will require more detailed reservoir characterization to take into account lithologic variation.« less

Geophysical well-log analysis of fractured crystalline rocks at East Bull Lake, Ontario, Canada

USGS Publications Warehouse

Paillet, Frederick L.; Hess, A.E.

1986-01-01

Various conventional geophysical borehole measurements were made in conjunction with measurements using a recently designed, low-frequency, acoustic-waveform probe and slow velocity flowmeter for characterization of a fractured mafic intrusion in southern Ontario, Canada. Conventional geophysical measurements included temperature, caliper, gamma, acoustic, single-point resistance, and acoustic televiewer logs. Hole stability problems prevented the use of neutron and gamma-gamma logs, because these logs require that a radioactive source be lowered into the borehole. Measurements were made in three boreholes as much as 850 m deep and penetrating a few tens of meters into granitic basement. All rocks within the mafic intrusion were characterized by minimal gamma radiation and acoustic velocities of about 6.9 km/sec. The uniformity of the acoustic velocities and the character of acoustic-waveform logs made with a conventional high-frequency logging source correlated with the density of fractures evident on televiewer logs. Sample intervals of high-frequency waveform logs were transformed into interpretations of effective fracture opening using a recent model for acoustic attenuation in fractured rocks. The new low-frequency sparker source did not perform as expected at depths below 250 m because of previously unsuspected problems with source firing under large hydrostatic heads. A new heat-pulse, slow velocity flowmeter was used to delineate in detail the flow regime indicated in a general way by temperature logs. The flowmeter measurements indicated that water was entering 2 of the boreholes at numerous fractures above a depth of 200 m, with flow in at least 2 of the boreholes exiting through large isolated fractures below a depth of 400 m. (Author 's abstract)

Fuzzy inference system for identification of geological stratigraphy off Prydz Bay, East Antarctica

NASA Astrophysics Data System (ADS)

Singh, Upendra K.

2011-12-01

The analysis of well logging data plays key role in the exploration and development of hydrocarbon reservoirs. Various well log parameters such as porosity, gamma ray, density, transit time and resistivity, help in classification of strata and estimation of the physical, electrical and acoustical properties of the subsurface lithology. Strong and conspicuous changes in some of the log parameters associated with any particular geological stratigraphy formation are function of its composition, physical properties that help in classification. However some substrata show moderate values in respective log parameters and make difficult to identify the kind of strata, if we go by the standard variability ranges of any log parameters and visual inspection. The complexity increases further with more number of sensors involved. An attempt is made to identify the kinds of stratigraphy from well logs over Prydz bay basin, East Antarctica using fuzzy inference system. A model is built based on few data sets of known stratigraphy and further the network model is used as test model to infer the lithology of a borehole from their geophysical logs, not used in simulation. Initially the fuzzy based algorithm is trained, validated and tested on well log data and finally identifies the formation lithology of a hydrocarbon reservoir system of study area. The effectiveness of this technique is demonstrated by the analysis of the results for actual lithologs and coring data of ODP Leg 188. The fuzzy results show that the training performance equals to 82.95% while the prediction ability is 87.69%. The fuzzy results are very encouraging and the model is able to decipher even thin layer seams and other strata from geophysical logs. The result provides the significant sand formation of depth range 316.0- 341.0 m, where core recovery is incomplete.

High-resolution well-log derived dielectric properties of gas-hydrate-bearing sediments, Mount Elbert Gas Hydrate Stratigraphic Test Well, Alaska North Slope

USGS Publications Warehouse

Sun, Y.; Goldberg, D.; Collett, T.; Hunter, R.

2011-01-01

A dielectric logging tool, electromagnetic propagation tool (EPT), was deployed in 2007 in the BPXA-DOE-USGS Mount Elbert Gas Hydrate Stratigraphic Test Well (Mount Elbert Well), North Slope, Alaska. The measured dielectric properties in the Mount Elbert well, combined with density log measurements, result in a vertical high-resolution (cm-scale) estimate of gas hydrate saturation. Two hydrate-bearing sand reservoirs about 20 m thick were identified using the EPT log and exhibited gas-hydrate saturation estimates ranging from 45% to 85%. In hydrate-bearing zones where variation of hole size and oil-based mud invasion are minimal, EPT-based gas hydrate saturation estimates on average agree well with lower vertical resolution estimates from the nuclear magnetic resonance logs; however, saturation and porosity estimates based on EPT logs are not reliable in intervals with substantial variations in borehole diameter and oil-based invasion.EPT log interpretation reveals many thin-bedded layers at various depths, both above and below the thick continuous hydrate occurrences, which range from 30-cm to about 1-m thick. Such thin layers are not indicated in other well logs, or from the visual observation of core, with the exception of the image log recorded by the oil-base microimager. We also observe that EPT dielectric measurements can be used to accurately detect fine-scale changes in lithology and pore fluid properties of hydrate-bearing sediments where variation of hole size is minimal. EPT measurements may thus provide high-resolution in-situ hydrate saturation estimates for comparison and calibration with laboratory analysis. ?? 2010 Elsevier Ltd.

Osteonal effects on elastic modulus and fatigue life in equine bone.

PubMed

Gibson, V A; Stover, S M; Gibeling, J C; Hazelwood, S J; Martin, R B

2006-01-01

We hypothesized that recently formed, incompletely mineralized, and thus, relatively deformable osteons in the equine third metacarpus enhance in vitro load-controlled fatigue life in two ways. Macroscopically, there is a compliance effect, because reduced tissue elastic modulus diminishes the stress required to reach a given strain. Microscopically, there is a cement line effect, in which new osteons and their cement lines more effectively serve as barriers to crack propagation. We studied 18 4 x 10 x 100 mm beams from the medial, lateral, and dorsal cortices of metacarpal bones from 6 thoroughbred racehorses. Following load-controlled fatigue testing to fracture in 4 point bending, a transverse, 100 microm thick, basic fuchsin-stained cross-section was taken from the load-bearing region. The number and diameter of all intact (and thus recently formed/compliant) secondary osteons in a 3.8 x 3.8 mm region in the center of the section were determined. The associated area fraction and cement line length of intact osteons were calculated, and the relationships between these variables, elastic modulus (E), and the logarithm of fatigue life (logN(F)) were analyzed. As expected, logN(F) was negatively correlated with E, which was in turn negatively correlated with intact osteon area fraction and density. (LogN(F))/E increased in proportion to intact osteon density and nonlinearly with cement line density (mm/mm(2)). These results support the hypothesis that remodeling extends load-controlled fatigue life both through the creation of osteonal barriers to microdamage propagation and modulus reduction.

Outcomes of Descemet Membrane Endothelial Keratoplasty in Eyes With a Previous Descemet Stripping Automated Endothelial Keratoplasty Graft.

PubMed

Sorkin, Nir; Showail, Mahmood; Einan-Lifshitz, Adi; Boutin, Tanguy; Borovik, Armand; Kreimei, Mohammad; Rosenblatt, Amir; Chan, Clara C; Rootman, David S

2018-06-01

To analyze the outcomes of Descemet membrane endothelial keratoplasty (DMEK) in eyes with previous Descemet stripping automated endothelial keratoplasty (DSAEK). This retrospective interventional case series included 26 eyes (26 patients) that underwent DMEK to replace a previous DSAEK graft with at least 6 months of follow-up. The outcome measures were indications for surgery, best spectacle-corrected visual acuity (BSCVA), endothelial cell density, rebubbling rate, rejection, and failure. Patient age was 71.9 ± 12.6 years. The average follow-up time after DMEK was 15.1 ± 10.6 months. Indications for DMEK were DSAEK graft failure (69%) and a DSAEK suboptimal visual outcome (31%). BSCVA of the entire cohort (n = 26) improved from 1.33 ± 0.78 logMAR preoperatively to 1.04 ± 0.78 and 1.06 ± 0.89 logMAR at 6 months postoperatively and at the last follow-up, respectively (P = 0.019 and P = 0.033). BSCVA among eyes without visual comorbidities (n = 13) improved from 0.84 ± 0.50 logMAR preoperatively to 0.55 ± 0.47 and 0.51 ± 0.49 logMAR at 6 months postoperatively and at final follow-up, respectively (P = 0.023 for both). Of these eyes, 84.6% had improvement in BSCVA at 6 months postoperatively and at last follow-up. In the subgroup of 8 eyes with DMEK for suboptimal visual outcomes after DSAEK, BSCVA improved from 0.81 ± 0.44 to 0.52 ± 0.35 logMAR at final follow-up (P = 0.024). When excluding eyes with visual comorbidities, BSCVA of this subgroup (n = 5) improved from 0.54 ± 0.32 to 0.36 ± 0.25 logMAR at final follow-up (P = 0.038). BSCVA of this subgroup at 6 months postoperatively was not significantly different from preoperative BSCVA, when including visual comorbidities (n = 8, 0.75 ± 0.60 logMAR, P = 0.79) and when excluding visual comorbidities (n = 5, 0.40 ± 0.28 logMAR, P = 0.621). Endothelial cell density decreased from 2753 ± 307 cells/mm to 1659 ± 655 cells/mm 6 months after surgery (39.7% loss, P = 0.005). Three eyes (11.5%) required rebubbling, and 5 eyes (19.2%) had secondary graft failure at 2 to 20 months. DMEK is effective for replacing previous DSAEK not only for graft failure but also for suboptimal visual outcomes.

Studying Petrophysical and Geomechanical Properties of Utica Point-Pleasant Shale and its Variations Across the Northern Appalachian Basin

NASA Astrophysics Data System (ADS)

Raziperchikolaee, S.; Kelley, M. E.; Burchwell, A.

2017-12-01

Understanding petrophysical and geomechanical parameters of shale formations and their variations across the basin are necessary to optimize the design of a hydraulic fracturing program aimed at enhancing long term oil/gas production from unconventional wells. Dipole sonic logging data (compressional-wave and shear-wave slowness) from multiple wells across the study area, coupled with formation bulk density log data, were used to calculate dynamic elastic parameters, including shear modulus, bulk modulus, Poisson's ratio, and Young's modulus for the shale formations. The individual-well data were aggregated into a single histogram for each parameter to gain an understanding of the variation in the properties (including brittleness) of the Utica Point-Pleasant formations across the entire study area. A crossplot of the compressional velocity and bulk density and a crossplot between the compressional velocity, the shear velocity, and depth of the measurement were used for a high level petrophysical characterization of the Utica Point-Pleasant. Detailed interpretation of drilling induced fractures recorded in image logs, and an analysis of shear wave anisotropy using multi-receiver sonic logs were also performed. Orientation of drilling induced fractures was measured to determine the maximum horizontal stress azimuth. Also, an analysis of shear wave anisotropy to predict stress anisotropy around the wellbore was performed to determine the direction of maximum horizontal stress. Our study shows how the detailed interpretation of borehole breakouts, drilling induced fractures, and sonic wave data can be used to reduce uncertainty and produce a better hydraulic fracturing design in the Utica Point Pleasant formations across the northern Appalachian Basin region of Ohio.

Joint Stochastic Inversion of Pre-Stack 3D Seismic Data and Well Logs for High Resolution Hydrocarbon Reservoir Characterization

NASA Astrophysics Data System (ADS)

Torres-Verdin, C.

2007-05-01

This paper describes the successful implementation of a new 3D AVA stochastic inversion algorithm to quantitatively integrate pre-stack seismic amplitude data and well logs. The stochastic inversion algorithm is used to characterize flow units of a deepwater reservoir located in the central Gulf of Mexico. Conventional fluid/lithology sensitivity analysis indicates that the shale/sand interface represented by the top of the hydrocarbon-bearing turbidite deposits generates typical Class III AVA responses. On the other hand, layer- dependent Biot-Gassmann analysis shows significant sensitivity of the P-wave velocity and density to fluid substitution. Accordingly, AVA stochastic inversion, which combines the advantages of AVA analysis with those of geostatistical inversion, provided quantitative information about the lateral continuity of the turbidite reservoirs based on the interpretation of inverted acoustic properties (P-velocity, S-velocity, density), and lithotype (sand- shale) distributions. The quantitative use of rock/fluid information through AVA seismic amplitude data, coupled with the implementation of co-simulation via lithotype-dependent multidimensional joint probability distributions of acoustic/petrophysical properties, yields accurate 3D models of petrophysical properties such as porosity and permeability. Finally, by fully integrating pre-stack seismic amplitude data and well logs, the vertical resolution of inverted products is higher than that of deterministic inversions methods.

Development of Enabling Scientific Tools to Characterize the Geologic Subsurface at Hanford

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kenna, Timothy C.; Herron, Michael M.

2014-07-08

This final report to the Department of Energy provides a summary of activities conducted under our exploratory grant, funded through U.S. DOE Subsurface Biogeochemical Research Program in the category of enabling scientific tools, which covers the period from July 15, 2010 to July 14, 2013. The main goal of this exploratory project is to determine the parameters necessary to translate existing borehole log data into reservoir properties following scientifically sound petrophysical relationships. For this study, we focused on samples and Ge-based spectral gamma logging system (SGLS) data collected from wells located in the Hanford 300 Area. The main activities consistedmore » of 1) the analysis of available core samples for a variety of mineralogical, chemical and physical; 2) evaluation of selected spectral gamma logs, environmental corrections, and calibration; 3) development of algorithms and a proposed workflow that permits translation of log responses into useful reservoir properties such as lithology, matrix density, porosity, and permeability. These techniques have been successfully employed in the petroleum industry; however, the approach is relatively new when applied to subsurface remediation. This exploratory project has been successful in meeting its stated objectives. We have demonstrated that our approach can lead to an improved interpretation of existing well log data. The algorithms we developed can utilize available log data, in particular gamma, and spectral gamma logs, and continued optimization will improve their application to ERSP goals of understanding subsurface properties.« less

Hydrogeologic framework of the middle San Pedro watershed, southeastern Arizona

USGS Publications Warehouse

Dickinson, Jesse; Kennedy, Jeffrey R.; Pool, D.R.; Cordova, Jeffrey T.; Parker, John T.; Macy, J.P.; Thomas, Blakemore

2010-01-01

Water managers in rural Arizona are under increasing pressure to provide sustainable supplies of water despite rapid population growth and demands for environmental protection. This report describes the results of a study of the hydrogeologic framework of the middle San Pedro watershed. The components of this report include: (1) a description of the geologic setting and depositional history of basin fill sediments that form the primary aquifer system, (2) updated bedrock altitudes underlying basin fill sediments calculated using a subsurface density model of gravity data, (3) delineation of hydrogeologic units in the basin fill using lithologic descriptions in driller's logs and models of airborne electrical resistivity data, (4) a digital three-dimensional (3D) hydrogeologic framework model (HFM) that represents spatial extents and thicknesses of the hydrogeologic units (HGUs), and (5) description of the hydrologic properties of the HGUs. The lithologic interpretations based on geophysical data and unit thickness and extent of the HGUs included in the HFM define potential configurations of hydraulic zones and parameters that can be incorporated in groundwater-flow models. The hydrogeologic framework comprises permeable and impermeable stratigraphic units: (1) bedrock, (2) sedimentary rocks predating basin-and-range deformation, (3) lower basin fill, (4) upper basin fill, and (5) stream alluvium. The bedrock unit includes Proterozoic to Cretaceous crystalline rocks, sedimentary rocks, and limestone that are relatively impermeable and poor aquifers, except for saturated portions of limestone. The pre-basin-and-range sediments underlie the lower basin fill but are relatively impermeable owing to cementation. However, they may be an important water-bearing unit where fractured. Alluvium of the lower basin fill, the main water-bearing unit, was deposited in the structural trough between the uplifted ridges of bedrock and (or) pre-basin-and-range sediments. Alluvium of the upper basin fill may be more permeable than the lower basin fill, but it is generally unsaturated in the study area. The lower basin fill stratigraphic unit was delineated into three HGUs on the basis of lithologic descriptions in driller?s logs and one-dimensional (1D) electrical models of airborne transient electromagnetic (TEM) surveys. The interbedded lower basin fill (ILBF) HGU represents an upper sequence having resistivity values between 5 and 40 ohm-m identified as interbedded sand, gravel, and clay in driller?s logs. Below this upper sequence, fine-grained lower basin fill (FLBF) HGU represents a thick silt and clay sequence having resistivity values between 5 and 20 ohm-m. Within the coarse-grained lower basin fill (CLBF) HGU, which underlies the silt and clay of the FLBF, the resistivity values on logs and 1D models increase to several hundred ohm-m and are highly variable within sand and gravel layers. These sequences match distinct resistivity and lithologic layers identified by geophysical logs in the adjacent Sierra Vista subwatershed, suggesting that these sequences are laterally continuous within both the Benson and Sierra Vista subwatersheds in the Upper San Pedro Basin. A subsurface density model based on gravity data was constructed to identify the top of bedrock and structures that may affect regional groundwater flow. The subsurface density model contains six layers having uniform density values, which are assigned on the basis of geophysical logs. The density values for the layers range between 1.65 g/cm3 for unsaturated sediments near the land surface and 2.67 g/cm3 for bedrock. Major features include three subbasins within the study area, the Huachuca City subbasin, the Tombstone subbasin, and the Benson subbasin, which have no expression in surface topography or lithology. Bedrock altitudes from the subsurface density model defined top altitudes of the bedrock HGU. The HFM includes the following HGUs in ascending stratigr

[The effect of forest exploitation on structure, diversity, and floristic composition of palmito-dominated Atlantic forests at Misiones, Argentina].

PubMed

Chediack, Sandra E

2008-06-01

The effect of forest exploitation--timber and palmito (Euterpe edulis, Palmae) extraction--on structure, diversity, and floristic composition of forests known as palmitals of the Atlantic Forest of Argentina was analyzed. These palmitals are located in Misiones (54 degrees 13' W and 25 degrees 41' S). Three 1 ha permanent plots were established: two in the "intangible" zone of the Iguazu National Park (PNI), and another in an exploited forest site bordering the PNI. Three 0.2 ha non-permanent plots were also measured. One was located in the PNI reserve zone where illegal palmito extraction occurs. The other two were in logged forest. All trees and palmitos with DBH >10 cm were identified and DBH and height were measured. For each of the six sites, richness and diversity of tree species, floristic composition, number of endemic species, and density of harvestable tree species were estimated. The harvest of E. edulis increases density of other tree species, diminishing palmito density. Forest explotation (logging and palmito harvest) is accompanied by an increase in diversity and density of heliophilic species, which have greater timber value in the region. However, this explotation also diminishes the density of palmito, of endemic species which normally grow in low densities, and of species found on the IUCN Red List. Results suggest that forest structure may be managed for timber and palmito production. The "intangible" zone of the PNI has the greatest conservation value in the Atlantic Forest, since a greater number of endemisms and endangered species are found here.

Serum Spot 14 concentration is negatively associated with thyroid-stimulating hormone level

PubMed Central

Chen, Yen-Ting; Tseng, Fen-Yu; Chen, Pei-Lung; Chi, Yu-Chao; Han, Der-Sheng; Yang, Wei-Shiung

2016-01-01

Abstract Spot 14 (S14) is a protein involved in fatty acid synthesis and was shown to be induced by thyroid hormone in rat liver. However, the presence of S14 in human serum and its relations with thyroid function status have not been investigated. The objectives of this study were to compare serum S14 concentrations in patients with hyperthyroidism or euthyroidism and to evaluate the associations between serum S14 and free thyroxine (fT4) or thyroid-stimulating hormone (TSH) levels. We set up an immunoassay for human serum S14 concentrations and compared its levels between hyperthyroid and euthyroid subjects. Twenty-six hyperthyroid patients and 29 euthyroid individuals were recruited. Data of all patients were pooled for the analysis of the associations between the levels of S14 and fT4, TSH, or quartile of TSH. The hyperthyroid patients had significantly higher serum S14 levels than the euthyroid subjects (median [Q1, Q3]: 975 [669, 1612] ng/mL vs 436 [347, 638] ng/mL, P < 0.001). In univariate linear regression, the log-transformed S14 level (logS14) was positively associated with fT4 but negatively associated with creatinine (Cre), total cholesterol (T-C), triglyceride (TG), low-density lipoprotein cholesterol (LDL-C), and TSH. The positive associations between logS14 and fT4 and the negative associations between logS14 and Cre, TG, T-C, or TSH remained significant after adjustment with sex and age. These associations were prominent in females but not in males. The logS14 levels were negatively associated with the TSH levels grouped by quartile (ß = −0.3020, P < 0.001). The association between logS14 and TSH quartile persisted after adjustment with sex and age (ß = −0.2828, P = 0.001). In stepwise multivariate regression analysis, only TSH grouped by quartile remained significantly associated with logS14 level. We developed an ELISA to measure serum S14 levels in human. Female patients with hyperthyroidism had higher serum S14 levels than the female subjects with euthyroidism. The serum logS14 concentrations were negatively associated with TSH levels. Changes of serum S14 level in the whole thyroid function spectrum deserve further investigation. PMID:27749565

The First Estimates of Marbled Cat Pardofelis marmorata Population Density from Bornean Primary and Selectively Logged Forest.

PubMed

Hearn, Andrew J; Ross, Joanna; Bernard, Henry; Bakar, Soffian Abu; Hunter, Luke T B; Macdonald, David W

2016-01-01

The marbled cat Pardofelis marmorata is a poorly known wild cat that has a broad distribution across much of the Indomalayan ecorealm. This felid is thought to exist at low population densities throughout its range, yet no estimates of its abundance exist, hampering assessment of its conservation status. To investigate the distribution and abundance of marbled cats we conducted intensive, felid-focused camera trap surveys of eight forest areas and two oil palm plantations in Sabah, Malaysian Borneo. Study sites were broadly representative of the range of habitat types and the gradient of anthropogenic disturbance and fragmentation present in contemporary Sabah. We recorded marbled cats from all forest study areas apart from a small, relatively isolated forest patch, although photographic detection frequency varied greatly between areas. No marbled cats were recorded within the plantations, but a single individual was recorded walking along the forest/plantation boundary. We collected sufficient numbers of marbled cat photographic captures at three study areas to permit density estimation based on spatially explicit capture-recapture analyses. Estimates of population density from the primary, lowland Danum Valley Conservation Area and primary upland, Tawau Hills Park, were 19.57 (SD: 8.36) and 7.10 (SD: 1.90) individuals per 100 km2, respectively, and the selectively logged, lowland Tabin Wildlife Reserve yielded an estimated density of 10.45 (SD: 3.38) individuals per 100 km2. The low detection frequencies recorded in our other survey sites and from published studies elsewhere in its range, and the absence of previous density estimates for this felid suggest that our density estimates may be from the higher end of their abundance spectrum. We provide recommendations for future marbled cat survey approaches.

The First Estimates of Marbled Cat Pardofelis marmorata Population Density from Bornean Primary and Selectively Logged Forest

PubMed Central

Hearn, Andrew J.; Ross, Joanna; Bernard, Henry; Bakar, Soffian Abu; Hunter, Luke T. B.; Macdonald, David W.

2016-01-01

The marbled cat Pardofelis marmorata is a poorly known wild cat that has a broad distribution across much of the Indomalayan ecorealm. This felid is thought to exist at low population densities throughout its range, yet no estimates of its abundance exist, hampering assessment of its conservation status. To investigate the distribution and abundance of marbled cats we conducted intensive, felid-focused camera trap surveys of eight forest areas and two oil palm plantations in Sabah, Malaysian Borneo. Study sites were broadly representative of the range of habitat types and the gradient of anthropogenic disturbance and fragmentation present in contemporary Sabah. We recorded marbled cats from all forest study areas apart from a small, relatively isolated forest patch, although photographic detection frequency varied greatly between areas. No marbled cats were recorded within the plantations, but a single individual was recorded walking along the forest/plantation boundary. We collected sufficient numbers of marbled cat photographic captures at three study areas to permit density estimation based on spatially explicit capture-recapture analyses. Estimates of population density from the primary, lowland Danum Valley Conservation Area and primary upland, Tawau Hills Park, were 19.57 (SD: 8.36) and 7.10 (SD: 1.90) individuals per 100 km2, respectively, and the selectively logged, lowland Tabin Wildlife Reserve yielded an estimated density of 10.45 (SD: 3.38) individuals per 100 km2. The low detection frequencies recorded in our other survey sites and from published studies elsewhere in its range, and the absence of previous density estimates for this felid suggest that our density estimates may be from the higher end of their abundance spectrum. We provide recommendations for future marbled cat survey approaches. PMID:27007219

Compacting biomass waste materials for use as fuel

NASA Astrophysics Data System (ADS)

Zhang, Ou

Every year, biomass waste materials are produced in large quantity. The combustibles in biomass waste materials make up over 70% of the total waste. How to utilize these waste materials is important to the nation and the world. The purpose of this study is to test optimum processes and conditions of compacting a number of biomass waste materials to form a densified solid fuel for use at coal-fired power plants or ordinary commercial furnaces. Successful use of such fuel as a substitute for or in cofiring with coal not only solves a solid waste disposal problem but also reduces the release of some gases from burning coal which cause health problem, acid rain and global warming. The unique punch-and-die process developed at the Capsule Pipeline Research Center, University of Missouri-Columbia was used for compacting the solid wastes, including waste paper, plastics (both film and hard products), textiles, leaves, and wood. The compaction was performed to produce strong compacts (biomass logs) under room temperature without binder and without preheating. The compaction conditions important to the commercial production of densified biomass fuel logs, including compaction pressure, pressure holding time, back pressure, moisture content, particle size, binder effects, and mold conditions were studied and optimized. The properties of the biomass logs were evaluated in terms of physical, mechanical, and combustion characteristics. It was found that the compaction pressure and the initial moisture content of the biomass material play critical roles in producing high-quality biomass logs. Under optimized compaction conditions, biomass waste materials can be compacted into high-quality logs with a density of 0.8 to 1.2 g/cm3. The logs made from the combustible wastes have a heating value in the range 6,000 to 8,000 Btu/lb which is only slightly (10 to 30%) less than that of subbituminous coal. To evaluate the feasibility of cofiring biomass logs with coal, burn tests were conducted in a stoke boiler. A separate burning test was also carried out by burning biomass logs alone in an outdoor hot-water furnace for heating a building. Based on a previous coal compaction study, the process of biomass compaction was studied numerically by use of a non-linear finite element code. A constitutive model with sufficient generality was adapted for biomass material to deal with pore contraction during compaction. A contact node algorithm was applied to implement the effect of mold wall friction into the finite element program. Numerical analyses were made to investigate the pressure distribution in a die normal to the axis of compaction, and to investigate the density distribution in a biomass log after compaction. The results of the analyses gave generally good agreement with theoretical analysis of coal log compaction, although assumptions had to be made about the variation in the elastic modulus of the material and the Poisson's ratio during the compaction cycle.

Statistical distribution of building lot frontage: application for Tokyo downtown districts

NASA Astrophysics Data System (ADS)

Usui, Hiroyuki

2018-03-01

The frontage of a building lot is the determinant factor of the residential environment. The statistical distribution of building lot frontages shows how the perimeters of urban blocks are shared by building lots for a given density of buildings and roads. For practitioners in urban planning, this is indispensable to identify potential districts which comprise a high percentage of building lots with narrow frontage after subdivision and to reconsider the appropriate criteria for the density of buildings and roads as residential environment indices. In the literature, however, the statistical distribution of building lot frontages and the density of buildings and roads has not been fully researched. In this paper, based on the empirical study in the downtown districts of Tokyo, it is found that (1) a log-normal distribution fits the observed distribution of building lot frontages better than a gamma distribution, which is the model of the size distribution of Poisson Voronoi cells on closed curves; (2) the statistical distribution of building lot frontages statistically follows a log-normal distribution, whose parameters are the gross building density, road density, average road width, the coefficient of variation of building lot frontage, and the ratio of the number of building lot frontages to the number of buildings; and (3) the values of the coefficient of variation of building lot frontages, and that of the ratio of the number of building lot frontages to that of buildings are approximately equal to 0.60 and 1.19, respectively.

Multi-wavelength campaign on NGC 7469. II. Column densities and variability in the X-ray spectrum

NASA Astrophysics Data System (ADS)

Peretz, U.; Behar, E.; Kriss, G. A.; Kaastra, J.; Arav, N.; Bianchi, S.; Branduardi-Raymont, G.; Cappi, M.; Costantini, E.; De Marco, B.; Di Gesu, L.; Ebrero, J.; Kaspi, S.; Mehdipour, M.; Middei, R.; Paltani, S.; Petrucci, P. O.; Ponti, G.; Ursini, F.

2018-01-01

We have investigated the ionic column density variability of the ionized outflows associated with NGC 7469, to estimate their location and power. This could allow a better understanding of galactic feedback of AGNs to their host galaxies. Analysis of seven XMM-Newton grating observations from 2015 is reported. We used an individual-ion spectral fitting approach, and compared different epochs to accurately determine variability on timescales of years, months, and days. We find no significant column density variability in a ten-year period implying that the outflow is far from the ionizing source. The implied lower bound on the ionization equilibrium time, ten years, constrains the lower limit on the distance to be at least 12 pc, and up to 31 pc, much less but consistent with the 1 kpc wide starburst ring. The ionization distribution of column density is reconstructed from measured column densities, nicely matching results of two 2004 observations, with one large high ionization parameter (ξ) component at 2 < log ξ< 3.5, and one at 0.5 < log ξ< 1 in cgs units. The strong dependence of the expression for kinetic power, ∝ 1 /ξ, hampers tight constraints on the feedback mechanism of outflows with a large range in ionization parameter, which is often observed and indicates a non-conical outflow. The kinetic power of the outflow is estimated here to be within 0.4 and 60% of the Eddington luminosity, depending on the ion used to estimate ξ.

Assessment of Enterotoxin Production and Cross-Contamination of Staphylococcus aureus between Food Processing Materials and Ready-To-Eat Cooked Fish Paste.

PubMed

Tango, Charles Nkufi; Hong, Sung-Sam; Wang, Jun; Oh, Deog-Hwan

2015-12-01

This study evaluated Staphylococcus aureus growth and subsequent staphylococcal enterotoxin A production in tryptone soy broth and on ready-to-eat cooked fish paste at 12 to 37 °C, as well as cross-contamination between stainless steel, polyethylene, and latex glove at room temperature. A model was developed using Barany and Roberts's growth model, which satisfactorily described the suitable growth of S. aureus with R(2)-adj from 0.94 to 0.99. Except at 12 °C, S. aureus cells in TSB presented a lag time lower (14.64 to 1.65 h), grew faster (0.08 to 0.31 log CFU/h) and produced SEA at lower cell density levels (5.65 to 6.44 log CFU/mL) compare to those inoculated on cooked fish paste with data of 16.920 to 1.985 h, 0.02 to 0.23 log CFU/h, and 6.19 to 7.11 log CFU/g, respectively. Staphylococcal enterotoxin type A (SEA) visual immunoassay test showed that primary SEA detection varied considerably among different storage temperature degrees and media. For example, it occurred only during exponential phase at 30 and 37 °C in TSB, but in cooked fish paste it took place at late exponential phase of S. aureus growth at 20 and 25 °C. The SEA detection test was negative on presence of S. aureus on cooked fish paste stored at 12 and 15 °C, although cell density reached level of 6.12 log CFU/g at 15 °C. Cross-contamination expressed as transfer rate of S. aureus from polyethylene surface to cooked fish paste surface was slower than that observed with steel surface to cooked fish paste under same conditions. These results provide helpful information for controlling S. aureus growth, SEA production and cross-contamination during processing of cooked fish paste. © 2015 Institute of Food Technologists®

Magnetospheric electron density long-term (>1 day) refilling rates inferred from passive radio emissions measured by IMAGE RPI during geomagnetically quiet times

NASA Astrophysics Data System (ADS)

Denton, R. E.; Wang, Y.; Webb, P. A.; Tengdin, P. M.; Goldstein, J.; Redfern, J. A.; Reinisch, B. W.

2012-03-01

Using measurements of the electron density ne found from passive radio wave observations by the IMAGE spacecraft RPI instrument on consecutive passes through the magnetosphere, we calculate the long-term (>1 day) refilling rate of equatorial electron density dne,eq/dt from L = 2 to 9. Our events did not exhibit saturation, probably because our data set did not include a deep solar minimum and because saturation is an unusual occurrence, especially outside of solar minimum. The median rate in cm-3/day can be modeled with log10(dne,eq/dt) = 2.22 - 0.006L - 0.0347L2, while the third quartile rate can be modeled with log10(dne,eq/dt) = 3.39 - 0.353L, and the mean rate can be modeled as log10(dne,eq/dt) = 2.74 - 0.269L. These statistical values are found from the ensemble of all observed rates at each L value, including negative rates (decreases in density due to azimuthal structure or radial motion or for other reasons), in order to characterize the typical behavior. The first quartile rates are usually negative for L < 4.7 and close to zero for larger L values. Our rates are roughly consistent with previous observations of ion refilling at geostationary orbit. Most previous studies of refilling found larger refilling rates, but many of these examined a single event which may have exhibited unusually rapid refilling. Comparing refilling rates at solar maximum to those at solar minimum, we found that the refilling rate is larger at solar maximum for small L < 4, about the same at solar maximum and solar minimum for L = 4.2 to 5.8, and is larger at solar minimum for large L > 5.8 such as at geostationary orbit (L ˜ 6.8) (at least to L of about 8). These results agree with previous results for ion refilling at geostationary orbit, may agree with previous results at lower L, and are consistent with some trends for ionospheric density.

Density structure of submarine slump and normal sediments of the first gas production test site at Daini-Atsumi Knoll near Nankai Trough, estimated by LWD logging data

NASA Astrophysics Data System (ADS)

Suzuki, K.; Takayama, T.; Fujii, T.; Yamamoto, K.

2014-12-01

Many geologists have discussed slope instability caused by gas-hydrate dissociation, which could make movable fluid in pore space of sediments. However, physical property changes caused by gas hydrate dissociation would not be so simple. Moreover, during the period of natural gas-production from gas-hydrate reservoir applying depressurization method would be completely different phenomena from dissociation processes in nature, because it could not be caused excess pore pressure, even though gas and water exist. Hence, in all cases, physical properties of gas-hydrate bearing sediments and that of their cover sediments are quite important to consider this phenomena, and to carry out simulation to solve focusing phenomena during gas hydrate dissociation periods. Daini-Atsumi knoll that was the first offshore gas-production test site from gas-hydrate is partially covered by slumps. Fortunately, one of them was penetrated by both Logging-While-Drilling (LWD) hole and pressure-coring hole. As a result of LWD data analyses and core analyses, we have understood density structure of sediments from seafloor to Bottom Simulating Reflector (BSR). The results are mentioned as following. ・Semi-confined slump showed high-density, relatively. It would be explained by over-consolidation that was result of layer-parallel compression caused by slumping. ・Bottom sequence of slump has relative high-density zones. It would be explained by shear-induced compaction along slide plane. ・Density below slump tends to increase in depth. It is reasonable that sediments below slump deposit have been compacting as normal consolidation. ・Several kinds of log-data for estimating physical properties of gas-hydrate reservoir sediments have been obtained. It will be useful for geological model construction from seafloor until BSR. We can use these results to consider geological model not only for slope instability at slumping, but also for slope stability during depressurized period of gas production from gas-hydrate. AcknowledgementThis study was supported by funding from the Research Consortium for Methane Hydrate Resources in Japan (MH21 Research Consortium) planned by the Ministry of Economy, Trade and Industry (METI).

CO-dark molecular gas at high redshift: very large H2 content and high pressure in a low-metallicity damped Lyman alpha system

NASA Astrophysics Data System (ADS)

Balashev, S. A.; Noterdaeme, P.; Rahmani, H.; Klimenko, V. V.; Ledoux, C.; Petitjean, P.; Srianand, R.; Ivanchik, A. V.; Varshalovich, D. A.

2017-09-01

We present a detailed analysis of an H2-rich, extremely strong intervening damped Ly α absorption system (DLA) at zabs = 2.786 towards the quasar J 0843+0221, observed with the Ultraviolet and Visual Echelle Spectrograph on the Very Large Telescope. The total column density of molecular (resp. atomic) hydrogen is log N(H2) = 21.21 ± 0.02 (resp. log N(H I) = 21.82 ± 0.11), making it to be the first case in quasar absorption line studies with H2 column density as high as what is seen in 13CO-selected clouds in the Milky Way. We find that this system has one of the lowest metallicity detected among H2-bearing DLAs, with [Zn/H] = -1.52^{+0.08}_{-0.10}. This can be the reason for the marked differences compared to systems with similar H2 column densities in the local Universe: (I) the kinetic temperature, T ˜ 120 K, derived from the J = 0, 1 H2 rotational levels is at least twice higher than expected; (II) there is little dust extinction with AV < 0.1; (III) no CO molecules are detected, putting a constraint on the XCO factor XCO > 2 × 1023 cm-2/(km s-1 K), in the very low metallicity gas. Low CO and high H2 contents indicate that this system represents 'CO-dark/faint' gas. We investigate the physical conditions in the H2-bearing gas using the fine-structure levels of C I, C II, Si II and the rotational levels of HD and H2. We find the number density to be about n ˜ 260-380 cm-3, implying a high thermal pressure of 3-5 × 104 cm-3 K. We further identify a trend of increasing pressure with increasing total hydrogen column density. This independently supports the suggestion that extremely strong DLAs (with log N(H) ˜22) probe high-z galaxies at low impact parameters.

Accuracy for detection of simulated lesions: comparison of fluid-attenuated inversion-recovery, proton density--weighted, and T2-weighted synthetic brain MR imaging

NASA Technical Reports Server (NTRS)

Herskovits, E. H.; Itoh, R.; Melhem, E. R.

2001-01-01

OBJECTIVE: The objective of our study was to determine the effects of MR sequence (fluid-attenuated inversion-recovery [FLAIR], proton density--weighted, and T2-weighted) and of lesion location on sensitivity and specificity of lesion detection. MATERIALS AND METHODS: We generated FLAIR, proton density-weighted, and T2-weighted brain images with 3-mm lesions using published parameters for acute multiple sclerosis plaques. Each image contained from zero to five lesions that were distributed among cortical-subcortical, periventricular, and deep white matter regions; on either side; and anterior or posterior in position. We presented images of 540 lesions, distributed among 2592 image regions, to six neuroradiologists. We constructed a contingency table for image regions with lesions and another for image regions without lesions (normal). Each table included the following: the reviewer's number (1--6); the MR sequence; the side, position, and region of the lesion; and the reviewer's response (lesion present or absent [normal]). We performed chi-square and log-linear analyses. RESULTS: The FLAIR sequence yielded the highest true-positive rates (p < 0.001) and the highest true-negative rates (p < 0.001). Regions also differed in reviewers' true-positive rates (p < 0.001) and true-negative rates (p = 0.002). The true-positive rate model generated by log-linear analysis contained an additional sequence-location interaction. The true-negative rate model generated by log-linear analysis confirmed these associations, but no higher order interactions were added. CONCLUSION: We developed software with which we can generate brain images of a wide range of pulse sequences and that allows us to specify the location, size, shape, and intrinsic characteristics of simulated lesions. We found that the use of FLAIR sequences increases detection accuracy for cortical-subcortical and periventricular lesions over that associated with proton density- and T2-weighted sequences.

An approach to derive some simple empirical equations to calibrate nuclear and acoustic well logging tools.

PubMed

Mohammad Al Alfy, Ibrahim

2018-01-01

A set of three pads was constructed from primary materials (sand, gravel and cement) to calibrate the gamma-gamma density tool. A simple equation was devised to convert the qualitative cps values to quantitative g/cc values. The neutron-neutron porosity tool measures the qualitative cps porosity values. A direct equation was derived to calculate the porosity percentage from the cps porosity values. Cement-bond log illustrates the cement quantities, which surround well pipes. This log needs a difficult process due to the existence of various parameters, such as: drilling well diameter as well as internal diameter, thickness and type of well pipes. An equation was invented to calculate the cement percentage at standard conditions. This equation can be modified according to varying conditions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Open-Cellular Co-Base and Ni-Base Superalloys Fabricated by Electron Beam Melting

PubMed Central

Murr, Lawrence; Li, Shujun; Tian, Yuxing; Amato, Krista; Martinez, Edwin; Medina, Frank

2011-01-01

Reticulated mesh samples of Co-29Cr-6Mo alloy and Ni-21Cr-9Mo-4Nb alloy (625) and stochastic foam samples of Co-29Cr-6Mo alloy fabricated by electron beam melting were characterized by optical metallography, and the dynamic stiffness (Young’s modulus) was measured by resonant frequency analysis. The relative stiffness (E/Es) versus relative density (ρ/ρs) plotted on a log-log basis resulted in a fitted straight line with a slope n ≅ 2, consistent with that for ideal open cellular materials. PMID:28879949

2010 Program of Study: Swirling and Swimming in Turbulence

DTIC Science & Technology

2011-06-01

total transit time for half the particle path is then T = −12 log a− 1 + 3 2 log 2− b −1 . (10) For small a, the first term dominates the travel time... the half -saturation density, which provides a limitation to the amount of prey that can be eaten at large P , i.e. Z depends linearly on P until the ...implies that, for example, a new generation of Z00 is produced by all interactions between two Z00, half of the interactions between Z00 and Z01, and 1 in

Scleral fixation of foldable acrylic intraocular lenses in aphakic post-vitrectomy eyes

PubMed Central

Mutoh, Tetsuya; Matsumoto, Yukihiro; Chikuda, Makoto

2011-01-01

Purpose To evaluate the outcome for scleral fixation of a foldable acrylic intraocular lens (IOL) in aphakic post-pars plana vitrectomy eyes for vitreoretinal disease. Methods The medical records of 15 patients were reviewed. We evaluated such factors as the underlying vitreoretinal disease, preoperative expected refraction and postoperative actual refraction, best corrected visual acuity (BCVA), corneal endothelial cell density, and intraoperative and postoperative complications. Results The most common cause of underlying vitreoretinal disease was retinal detachment, which was found in 8 cases. The mean refractive error was −0.10 diopters (D). The mean minimum angle of resolution (logMAR) values of BCVA were 0.27 preoperatively and 0.14 postoperatively. The mean corneal endothelial cell density was 2400 cells/mm2 preoperatively and 2187 cells/mm2 postoperatively. No significant differences were observed in either the logMAR values of BCVA or the corneal endothelial cell density before and after surgery. No intraoperative complications occurred in any of the patients. Postoperative complications occurred in a total of 7 eyes, and the most severe complications comprised 4 cases of transient ocular hypertension. Conclusion The results for the scleral fixation of foldable acrylic IOLs were good in aphakic post-vitrectomy eyes. PMID:21311652

A Robust Mass Estimator for Dark Matter Subhalo Perturbations in Strong Gravitational Lenses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Minor, Quinn E.; Kaplinghat, Manoj; Li, Nan

A few dark matter substructures have recently been detected in strong gravitational lenses through their perturbations of highly magnified images. We derive a characteristic scale for lensing perturbations and show that they are significantly larger than the perturber’s Einstein radius. We show that the perturber’s projected mass enclosed within this radius, scaled by the log-slope of the host galaxy’s density profile, can be robustly inferred even if the inferred density profile and tidal radius of the perturber are biased. We demonstrate the validity of our analytic derivation using several gravitational lens simulations where the tidal radii and the inner log-slopesmore » of the density profile of the perturbing subhalo are allowed to vary. By modeling these simulated data, we find that our mass estimator, which we call the effective subhalo lensing mass, is accurate to within about 10% or smaller in each case, whereas the inferred total subhalo mass can potentially be biased by nearly an order of magnitude. We therefore recommend that the effective subhalo lensing mass be reported in future lensing reconstructions, as this will allow for a more accurate comparison with the results of dark matter simulations.« less

Log-rise of the resistivity in the holographic Kondo model

NASA Astrophysics Data System (ADS)

Padhi, Bikash; Tiwari, Apoorv; Setty, Chandan; Phillips, Philip W.

2018-03-01

We study a single-channel Kondo effect using a recently developed [1-4] holographic large-N technique. In order to obtain resistivity of this model, we introduce a probe field. The gravity dual of a localized fermionic impurity in 1 +1 -dimensional host matter is constructed by embedding a localized two-dimensional Anti-de Sitter (AdS2 )-brane in the bulk of three-dimensional AdS3 . This helps us construct an impurity charge density which acts as a source to the bulk equation of motion of the probe gauge field. The functional form of the charge density is obtained independently by solving the equations of motion for the fields confined to the AdS2 -brane. The asymptotic solution of the probe field is dictated by the impurity charge density, which in turn affects the current-current correlation functions and hence the resistivity. Our choice of parameters tunes the near-boundary impurity current to be marginal, resulting in a log T behavior in the UV resistivity, as is expected for the Kondo problem. The resistivity at the IR fixed point turns out to be zero, signaling a complete screening of the impurity.

A first determination of the surface density of galaxy clusters at very low x-ray fluxes

NASA Technical Reports Server (NTRS)

Rosati, Piero; Della Ceca, Roberta; Burg, Richard; Norman, Colin; Giacconi, Riccardo

1995-01-01

We present the first results of a serendipitous search for clusters of galaxies in deep ROSAT position sensitive proportional counter (PSPC) pointed observations at high Galactic latitude. The survey is being carried out using a wavelet-based detection algorithm which is not biased against extended, low surface brightness sources. A new flux-diameter limited sample of 10 cluster candidates has been created from approximately 3 deg(exp 2) surveyed area. Preliminary CCD observations have revealed that a large fraction of these candidates correspond to a visible enhancement in the galaxy surface density, and several others have been identified from other surveys. We believe these sources to be either low- to moderate-redshift groups or intermediate- to high-redshift clusters. We show X-ray and optical images of some of the clusters identified to date. We present, for the first time, the derived number density of the galaxy clusters to a flux limit of 1 x 10(exp -14) ergs cm(exp -2) s(exp -1) (0.5-2.0 keV). This extends the log N-log S of previous cluster surveys by more than one decade in flux. Results are compared to theoretical predictions for cluster number counts.

Detailed gravity survey to help seismic microzonation: Mapping the thickness of unconsolidated deposits in Ottawa, Canada

NASA Astrophysics Data System (ADS)

Lamontagne, M.; Thomas, M.; Silliker, J.; Jobin, D.

2011-11-01

In this study, measurements of gravity were made to map and model the thickness of Quaternary deposits (sand and clay) overlying Ordovician limestones in a suburb of Ottawa (Orléans, Ontario). Because ground motion amplification is partly related to the thickness of unconsolidated deposits, this work helps refine the assessment of the earthquake damage potential of the area. It also helps the mapping of clay basins, which can locally exceed 100 m in thickness, where ground motion amplification can occur. Previous work, including well log data and seismic methods, have yielded a wealth of information on near-surface geology in Orléans, thereby providing the necessary constraints to test the applicability of gravity modeling in other locations where other methods cannot always be used. Some 104 gravity stations were occupied in an 8 × 12 km test area in the Orléans. Stations were accurately located with differential GPS that provided centimetric accuracy in elevation. Densities of the unconsolidated Quaternary deposits (Champlain Sea clay) determined on core samples and densities determined on limestone samples from outcrops were used to constrain models of the clay layer overlying the higher density bedrock formations (limestone). The gravity anomaly map delineates areas where clay basins attain > 100 m depth. Assuming a realistic density for the Champlain Sea clays (1.9-2.1 g/cm 3), the thickness over the higher density bedrock formations (Ordovician carbonate rocks) was modeled and compared with well logs and two seismic reflection profiles. The models match quite well with the information determined from well logs and seismic methods. It was found that gravity and the thickness of unconsolidated deposits are correlated but the uncertainties in both data sets preclude the definition of a direct correlation between the two. We propose that gravity measurements at a local scale be used as an inexpensive means of mapping the thickness of unconsolidated deposits in low-density urban areas. To obtain meaningful results, three conditions must exist. Firstly, elevations of gravity stations must be measured accurately using differential GPS; secondly, that the regional gravity field must be well defined, and thirdly, that the local geology be simple enough to be realistically represented with a two-layer model.

Selective logging: do rates of forest turnover in stems, species composition and functional traits decrease with time since disturbance? – A 45 year perspective

PubMed Central

Osazuwa-Peters, Oyomoare L.; Jiménez, Iván; Oberle, Brad; Chapman, Colin A.; Zanne, Amy E.

2015-01-01

Selective logging, the targeted harvesting of timber trees in a single cutting cycle, is globally rising in extent and intensity. Short-term impacts of selective logging on tropical forests have been widely investigated, but long-term effects on temporal dynamics of forest structure and composition are largely unknown. Understanding these long-term dynamics will help determine whether tropical forests are resilient to selective logging and inform choices between competing demands of anthropogenic use versus conservation of tropical forests. Forest dynamics can be studied within the framework of succession theory, which predicts that temporal turnover rates should decline with time since disturbance. Here, we investigated the temporal dynamics of a tropical forest in Kibale National Park, Uganda over 45 years following selective logging. We estimated turnover rates in stems, species composition, and functional traits (wood density and diameter at breast height), using observations from four censuses in 1989, 1999, 2006, and 2013, of stems ≥ 10 cm diameter within 17 unlogged and 9 logged 200 × 10 m vegetation plots. We used null models to account for interdependencies among turnover rates in stems, species composition, and functional traits. We tested predictions that turnover rates should be higher and decrease with increasing time since the selective logging event in logged forest, but should be less temporally variable in unlogged forest. Overall, we found higher turnover rates in logged forest for all three attributes, but turnover rates did not decline through time in logged forest and was not less temporally variable in unlogged forest. These results indicate that successional models that assume recovery to pre-disturbance conditions are inadequate for predicting the effects of selective logging on the dynamics of the tropical forest in Kibale. Selective logging resulted in persistently higher turnover rates, which may compromise the carbon storage capacity of Kibale’s forest. Selective logging effects may also interact with effects from other global trends, potentially causing major long-term shifts in the dynamics of tropical forests. Similar studies in tropical forests elsewhere will help determine the generality of these conclusions. Ultimately, the view that selective logging is a benign approach to the management of tropical forests should be reconsidered in the light of studies of the effects of this practice on long-term forest dynamics. PMID:26339115

Selective logging: do rates of forest turnover in stems, species composition and functional traits decrease with time since disturbance? - A 45 year perspective.

PubMed

Osazuwa-Peters, Oyomoare L; Jiménez, Iván; Oberle, Brad; Chapman, Colin A; Zanne, Amy E

2015-12-01

Selective logging, the targeted harvesting of timber trees in a single cutting cycle, is globally rising in extent and intensity. Short-term impacts of selective logging on tropical forests have been widely investigated, but long-term effects on temporal dynamics of forest structure and composition are largely unknown. Understanding these long-term dynamics will help determine whether tropical forests are resilient to selective logging and inform choices between competing demands of anthropogenic use versus conservation of tropical forests. Forest dynamics can be studied within the framework of succession theory, which predicts that temporal turnover rates should decline with time since disturbance. Here, we investigated the temporal dynamics of a tropical forest in Kibale National Park, Uganda over 45 years following selective logging. We estimated turnover rates in stems, species composition, and functional traits (wood density and diameter at breast height), using observations from four censuses in 1989, 1999, 2006, and 2013, of stems ≥ 10 cm diameter within 17 unlogged and 9 logged 200 × 10 m vegetation plots. We used null models to account for interdependencies among turnover rates in stems, species composition, and functional traits. We tested predictions that turnover rates should be higher and decrease with increasing time since the selective logging event in logged forest, but should be less temporally variable in unlogged forest. Overall, we found higher turnover rates in logged forest for all three attributes, but turnover rates did not decline through time in logged forest and was not less temporally variable in unlogged forest. These results indicate that successional models that assume recovery to pre-disturbance conditions are inadequate for predicting the effects of selective logging on the dynamics of the tropical forest in Kibale. Selective logging resulted in persistently higher turnover rates, which may compromise the carbon storage capacity of Kibale's forest. Selective logging effects may also interact with effects from other global trends, potentially causing major long-term shifts in the dynamics of tropical forests. Similar studies in tropical forests elsewhere will help determine the generality of these conclusions. Ultimately, the view that selective logging is a benign approach to the management of tropical forests should be reconsidered in the light of studies of the effects of this practice on long-term forest dynamics.

Interaction of estradiol and high density lipoproteins on proliferation of the human breast cancer cell line MCF-7 adapted to grow in serum free conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jozan, S.; Faye, J.C.; Tournier, J.F.

1985-11-27

The responsiveness of the human mammary carcinoma cell line MCF-7 to estradiol and tamoxifen treatment has been studied in different culture conditions. Cells from exponentially growing cultures were compared with cells in their initial cycles after replating from confluent cultures (''confluent-log'' cells). It has been observed that estradiol stimulation of tritiated thymidine incorporation decreases with cell density and that ''confluent-log'' cells are estrogen unresponsive for a period of four cell cycles in serum-free medium conditions. On the other hand, growth of cells replated from exponentially growing, as well as from confluent cultures, can be inhibited by tamoxifen or a combinedmore » treatment with tamoxifen and the progestin levonorgestrel. This growth inhibitory effect can be rescued by estradiol when cells are replated from exponentially growing cultures. The growth inhibitory effect cannot be rescued by estradiol alone (10(-10) to 10(-8) M) when cells are replated from confluent cultures. In this condition, the addition of steroid depleted serum is necessary to reverse the state of estradiol unresponsiveness. Serum can be replaced by high density lipoproteins but not by low density lipoproteins or lipoprotein deficient serum. The present data show that estradiol and HDL interact in the control of MCF-7 cell proliferation.« less

Occurrence of Vibrio parahaemolyticus, Vibrio cholerae, and Vibrio vulnificus in the Aquacultural Environments of Taiwan.

PubMed

Tey, Yao Hsien; Jong, Koa-Jen; Fen, Shin-Yuan; Wong, Hin-Chung

2015-05-01

The occurrence of Vibrio parahaemolyticus, Vibrio vulnificus, and Vibrio cholerae in a total of 72 samples from six aquaculture ponds for groupers, milk fish, and tilapia in southern Taiwan was examined by the membrane filtration and colony hybridization method. The halophilic V. parahaemolyticus was only recovered in seawater ponds, with a high isolation frequency of 86.1% and a mean density of 2.6 log CFU/g. V. cholerae was found in both the seawater and freshwater ponds but preferentially in freshwater ponds, with a frequency of 72.2% and a mean density of 1.65 log CFU/g. V. vulnificus was identified mainly in seawater ponds, with an isolation frequency of 27.8%. The density of V. parahaemolyticus in seawater ponds was positively related to water temperature (Pearson correlation coefficient, r = 0.555) and negatively related to salinity (r = 2 0.333). The density of V. cholerae in all six ponds was positively related to water temperature (r = 0.342) and negatively related to salinity (r = 2 0.432). Two putatively pathogenic tdh(+) V. parahaemolyticus isolates (1.4% of the samples) and no ctx(+) V. cholerae isolates were identified. The experimental results may facilitate assessments of the risk posed by these pathogenic Vibrio species in Taiwan, where aquaculture provides a large part of the seafood supply.

Electrochemical disinfection using boron-doped diamond electrode--the synergetic effects of in situ ozone and free chlorine generation.

PubMed

Rajab, Mohamad; Heim, Carolin; Letzel, Thomas; Drewes, Jörg E; Helmreich, Brigitte

2015-02-01

This work investigated the capability of using a boron-doped diamond (BDD) electrode for bacterial disinfection in different water matrices containing varying amounts of chloride. The feed water containing Pseudomonas aeruginosa was electrochemically treated while applying different electrode conditions. Depending on the applied current density and the exposure time, inactivation between 4- and 8-log of the targeted microorganisms could be achieved. The disinfection efficiency was driven by the generation of free chlorine as a function of chloride concentration in the water. A synergetic effect of generating both free chlorine and ozone in situ during the disinfection process resulted in an effective bactericidal impact. The formation of the undesired by-products chlorate and perchlorate depended on the water matrix, the applied current density and the desired target disinfection level. In case of synthetic water with a low chloride concentration (20 mg L(-1)) and an applied current density of 167 mA cm(-2), a 6-log inactivation of Pseudomonas aeruginosa could be achieved after 5 min of exposure. The overall energy consumption ranged between 0.3 and 0.6 kW h m(-3) depending on the applied current density and water chemistry. Electrochemical water disinfection represents a suitable and efficient process for producing pathogen-free water without the use of any chemicals. Copyright © 2014 Elsevier Ltd. All rights reserved.

Mixed effects modelling for glass category estimation from glass refractive indices.

PubMed

Lucy, David; Zadora, Grzegorz

2011-10-10

520 Glass fragments were taken from 105 glass items. Each item was either a container, a window, or glass from an automobile. Each of these three classes of use are defined as glass categories. Refractive indexes were measured both before, and after a programme of re-annealing. Because the refractive index of each fragment could not in itself be observed before and after re-annealing, a model based approach was used to estimate the change in refractive index for each glass category. It was found that less complex estimation methods would be equivalent to the full model, and were subsequently used. The change in refractive index was then used to calculate a measure of the evidential value for each item belonging to each glass category. The distributions of refractive index change were considered for each glass category, and it was found that, possibly due to small samples, members of the normal family would not adequately model the refractive index changes within two of the use types considered here. Two alternative approaches to modelling the change in refractive index were used, one employed more established kernel density estimates, the other a newer approach called log-concave estimation. Either method when applied to the change in refractive index was found to give good estimates of glass category, however, on all performance metrics kernel density estimates were found to be slightly better than log-concave estimates, although the estimates from log-concave estimation prossessed properties which had some qualitative appeal not encapsulated in the selected measures of performance. These results and implications of these two methods of estimating probability densities for glass refractive indexes are discussed. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Exponential series approaches for nonparametric graphical models

NASA Astrophysics Data System (ADS)

Janofsky, Eric

Markov Random Fields (MRFs) or undirected graphical models are parsimonious representations of joint probability distributions. This thesis studies high-dimensional, continuous-valued pairwise Markov Random Fields. We are particularly interested in approximating pairwise densities whose logarithm belongs to a Sobolev space. For this problem we propose the method of exponential series which approximates the log density by a finite-dimensional exponential family with the number of sufficient statistics increasing with the sample size. We consider two approaches to estimating these models. The first is regularized maximum likelihood. This involves optimizing the sum of the log-likelihood of the data and a sparsity-inducing regularizer. We then propose a variational approximation to the likelihood based on tree-reweighted, nonparametric message passing. This approximation allows for upper bounds on risk estimates, leverages parallelization and is scalable to densities on hundreds of nodes. We show how the regularized variational MLE may be estimated using a proximal gradient algorithm. We then consider estimation using regularized score matching. This approach uses an alternative scoring rule to the log-likelihood, which obviates the need to compute the normalizing constant of the distribution. For general continuous-valued exponential families, we provide parameter and edge consistency results. As a special case we detail a new approach to sparse precision matrix estimation which has statistical performance competitive with the graphical lasso and computational performance competitive with the state-of-the-art glasso algorithm. We then describe results for model selection in the nonparametric pairwise model using exponential series. The regularized score matching problem is shown to be a convex program; we provide scalable algorithms based on consensus alternating direction method of multipliers (ADMM) and coordinate-wise descent. We use simulations to compare our method to others in the literature as well as the aforementioned TRW estimator.

Study of the partition coefficients Kp/f of seven model migrants from LDPE polymer in contact with food simulants.

PubMed

Paseiro-Cerrato, Rafael; Tongchat, Chinawat; Franz, Roland

2016-05-01

This study evaluated the influence of parameters such as temperature and type of low-density polyethylene (LDPE) film on the log Kp/f values of seven model migrants in food simulants. Two different types of LDPE films contaminated by extrusion and immersion were placed in contact with three food simulants including 20% ethanol, 50% ethanol and olive oil under several time-temperature conditions. Results suggest that most log Kp/f values are little affected by these parameters in this study. In addition, the relation between log Kp/f and log Po/w was established for each food simulant and regression lines, as well as correlation coefficients, were calculated. Correlations were compared with data from real foodstuffs. Data presented in this study could be valuable in assigning certain foods to particular food simulants as well as predicting the mass transfer of potential migrants into different types of food or food simulants, avoiding tedious and expensive laboratory analysis. The results could be especially useful for regulatory agencies as well as for the food industry.

Application of Nuclear Well Logging Techniques to Lunar Resource Assessment

NASA Technical Reports Server (NTRS)

Albats, P.; Groves, J.; Schweitzer, J.; Tombrello, T.

1992-01-01

The use of neutron and gamma ray measurements for the analysis of material composition has become well established in the last 40 years. Schlumberger has pioneered the use of this technology for logging wells drilled to produce oil and gas, and for this purpose has developed neutron generators that allow measurements to be made in deep (5000 m) boreholes under adverse conditions. We also make ruggedized neutron and gamma ray detector packages that can be used to make reliable measurements on the drill collar of a rotating drill string while the well is being drilled, where the conditions are severe. Modern nuclear methods used in logging measure rock formation parameters like bulk density and porosity, fluid composition, and element abundances by weight including hydrogen concentration. The measurements are made with high precision and accuracy. These devices (well logging sondes) share many of the design criteria required for remote sensing in space; they must be small, light, rugged, and able to perform reliably under adverse conditions. We see a role for the adaptation of this technology to lunar or planetary resource assessment missions.

Amount of gas hydrate estimated from compressional- and shear-wave velocities at the JAPEX/JNOC/GSC Mallik 2L-38 gas hydrate research well

USGS Publications Warehouse

Lee, M.W.

1999-01-01

The amount of in situ gas hydrate concentrated in the sediment pore space at the JAPEX/JNOC/GSC Mallik 2L-38 gas hydrate research well was estimated by using compressional-wave (P-wave) and shear-wave (S-wave) downhole log measurements. A weighted equation developed for relating the amount of gas hydrate concentrated in the pore space of unconsolidated sediments to the increase of seismic velocities was applied to the acoustic logs with porosities derived from the formation density log. A weight of 1.56 (W=1.56) and the exponent of 1 (n=1) provided consistent estimates of gas hydrate concentration from the S-wave and the P-wave logs. Gas hydrate concentration is as much as 80% in the pore spaces, and the average gas hydrate concentration within the gas-hydrate-bearing section from 897 m to 1110 m (excluding zones where there is no gas hydrate) was calculated at 39.0% when using P-wave data and 37.8% when using S-wave data.

Log analysis of six boreholes in conjunction with geologic characterization above and on top of the Weeks Island Salt Dome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sattler, A.R.

1996-06-01

Six boreholes were drilled during the geologic characterization and diagnostics of the Weeks Island sinkhole that is over the two-tiered salt mine which was converted for oil storage by the U.S. Strategic Petroleum Reserve. These holes were drilled to provide for geologic characterization of the Weeks Island Salt Dome and its overburden in the immediate vicinity of the sinkhole (mainly through logs and core); to establish a crosswell configuration for seismic tomography; to establish locations for hydrocarbon detection and tracer injection; and to provide direct observations of sinkhole geometry and material properties. Specific objectives of the logging program were to:more » (1) identify the top of and the physical state of the salt dome; (2) identify the water table; (3) obtain a relative salinity profile in the aquifer within the alluvium, which ranges from the water table directly to the top of the Weeks Island salt dome; and (4) identify a reflecting horizon seen on seismic profiles over this salt dome. Natural gamma, neutron, density, sonic, resistivity and caliper logs were run.« less

A composite lithology log while drilling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tannenbaum, E.; Sutcliffe, B.; Franks, A.

A new method for producing a computerized composite lithology log (CLL) while drilling by integrating MWD (measurement while drilling) and surface data is described. The CLL integrates three types of data (MWD mechanical, MWD geophysical, and surface cuttings) acquired during drilling, in three time stages: (1) Real Time. MWD drilling mechanical data including the rate of penetration and the downhole torque. This stage would provide bed boundaries and some inferred lithology. This would assist the driller with immediate drilling decisions and determine formation tops for coring, casing point, and correlation. (2) MWD Time. Recomputation of the above by adding MWDmore » geophysical data (gamma-ray, resistivity, neutron-density). This stage would upgrade the lithology inference, and give higher resolution of bed boundaries. (3) Lag Time. Detailed analysis of surface cuttings to confirm the inferred lithologies. This last input will result in a high-quality CLL with accurate lithologies and bed boundaries. The log will serve the geologist as well as the driller, petrophysicist, and reservoir engineer. It will form the basis for more comprehensive formation evaluation while drilling by adding hydrocarbon and MWD log data.« less

A Probabilistic Model for Predicting Attenuation of Viruses During Percolation in Unsaturated Natural Barriers

NASA Astrophysics Data System (ADS)

Faulkner, B. R.; Lyon, W. G.

2001-12-01

We present a probabilistic model for predicting virus attenuation. The solution employs the assumption of complete mixing. Monte Carlo methods are used to generate ensemble simulations of virus attenuation due to physical, biological, and chemical factors. The model generates a probability of failure to achieve 4-log attenuation. We tabulated data from related studies to develop probability density functions for input parameters, and utilized a database of soil hydraulic parameters based on the 12 USDA soil categories. Regulators can use the model based on limited information such as boring logs, climate data, and soil survey reports for a particular site of interest. Plackett-Burman sensitivity analysis indicated the most important main effects on probability of failure to achieve 4-log attenuation in our model were mean logarithm of saturated hydraulic conductivity (+0.396), mean water content (+0.203), mean solid-water mass transfer coefficient (-0.147), and the mean solid-water equilibrium partitioning coefficient (-0.144). Using the model, we predicted the probability of failure of a one-meter thick proposed hydrogeologic barrier and a water content of 0.3. With the currently available data and the associated uncertainty, we predicted soils classified as sand would fail (p=0.999), silt loams would also fail (p=0.292), but soils classified as clays would provide the required 4-log attenuation (p=0.001). The model is extendible in the sense that probability density functions of parameters can be modified as future studies refine the uncertainty, and the lightweight object-oriented design of the computer model (implemented in Java) will facilitate reuse with modified classes. This is an abstract of a proposed presentation and does not necessarily reflect EPA policy.

Determining prescription durations based on the parametric waiting time distribution.

PubMed

Støvring, Henrik; Pottegård, Anton; Hallas, Jesper

2016-12-01

The purpose of the study is to develop a method to estimate the duration of single prescriptions in pharmacoepidemiological studies when the single prescription duration is not available. We developed an estimation algorithm based on maximum likelihood estimation of a parametric two-component mixture model for the waiting time distribution (WTD). The distribution component for prevalent users estimates the forward recurrence density (FRD), which is related to the distribution of time between subsequent prescription redemptions, the inter-arrival density (IAD), for users in continued treatment. We exploited this to estimate percentiles of the IAD by inversion of the estimated FRD and defined the duration of a prescription as the time within which 80% of current users will have presented themselves again. Statistical properties were examined in simulation studies, and the method was applied to empirical data for four model drugs: non-steroidal anti-inflammatory drugs (NSAIDs), warfarin, bendroflumethiazide, and levothyroxine. Simulation studies found negligible bias when the data-generating model for the IAD coincided with the FRD used in the WTD estimation (Log-Normal). When the IAD consisted of a mixture of two Log-Normal distributions, but was analyzed with a single Log-Normal distribution, relative bias did not exceed 9%. Using a Log-Normal FRD, we estimated prescription durations of 117, 91, 137, and 118 days for NSAIDs, warfarin, bendroflumethiazide, and levothyroxine, respectively. Similar results were found with a Weibull FRD. The algorithm allows valid estimation of single prescription durations, especially when the WTD reliably separates current users from incident users, and may replace ad-hoc decision rules in automated implementations. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Drivers of aboveground wood production in a lowland tropical forest of West Africa: teasing apart the roles of tree density, tree diversity, soil phosphorus, and historical logging.

PubMed

Jucker, Tommaso; Sanchez, Aida Cuni; Lindsell, Jeremy A; Allen, Harriet D; Amable, Gabriel S; Coomes, David A

2016-06-01

Tropical forests currently play a key role in regulating the terrestrial carbon cycle and abating climate change by storing carbon in wood. However, there remains considerable uncertainty as to whether tropical forests will continue to act as carbon sinks in the face of increased pressure from expanding human activities. Consequently, understanding what drives productivity in tropical forests is critical. We used permanent forest plot data from the Gola Rainforest National Park (Sierra Leone) - one of the largest tracts of intact tropical moist forest in West Africa - to explore how (1) stand basal area and tree diversity, (2) past disturbance associated with past logging, and (3) underlying soil nutrient gradients interact to determine rates of aboveground wood production (AWP). We started by statistically modeling the diameter growth of individual trees and used these models to estimate AWP for 142 permanent forest plots. We then used structural equation modeling to explore the direct and indirect pathways which shape rates of AWP. Across the plot network, stand basal area emerged as the strongest determinant of AWP, with densely packed stands exhibiting the fastest rates of AWP. In addition to stand packing density, both tree diversity and soil phosphorus content were also positively related to productivity. By contrast, historical logging activities negatively impacted AWP through the removal of large trees, which contributed disproportionately to productivity. Understanding what determines variation in wood production across tropical forest landscapes requires accounting for multiple interacting drivers - with stand structure, tree diversity, and soil nutrients all playing a key role. Importantly, our results also indicate that logging activities can have a long-lasting impact on a forest's ability to sequester and store carbon, emphasizing the importance of safeguarding old-growth tropical forests.

HST/COS detection of a Ne VIII absorber towards PG 1407+265: an unambiguous tracer of collisionally ionized hot gas?

NASA Astrophysics Data System (ADS)

Hussain, T.; Muzahid, S.; Narayanan, A.; Srianand, R.; Wakker, B. P.; Charlton, J. C.; Pathak, A.

2015-01-01

We report the detection of Ne VIII in a zabs = 0.599 61 absorber towards the QSO PG1407+265 (zem= 0.94). Besides Ne VIII, absorption from H I Lyman series lines (H I λ1025-λ915), several other low (C II, N II, O II and S II), intermediate (C III, N III, N IV, O III, S IV and S V) and high (S VI, O VI and Ne VIII) ionization metal lines are detected. Disparity in the absorption line kinematics between different ions implies that the absorbing gas comprises of multiple ionization phases. The low and the intermediate ions (except S V) trace a compact (˜410 pc), metal-rich (Z ˜ Z⊙) and overdense (log nH ˜ -2.6) photoionized region that sustained star formation for a prolonged period. The high ions, Ne VIII and O VI, can be explained as arising in a low density (-5.3 ≤ log nH ≤ -5.0), metal-rich (Z ≳ Z⊙) and diffuse (˜180 kpc) photoionized gas. The S V, S VI and C IV [detected in the Faint Object Spectrograph (FOS) spectrum] require an intermediate photoionization phase with -4.2 < log nH < -3.5. Alternatively, a pure collisional ionization model, as used to explain the previous known Ne VIII absorbers, with 5.65 < log T < 5.72, can reproduce the S VI, O VI and Ne VIII column densities simultaneously in a single phase. However, even such models require an intermediate phase to reproduce any observable S V and/or C IV. Therefore, we conclude that when multiple phases are present, the presence of Ne VIII is not necessarily an unambiguous indication of collisionally ionized hot gas.

Abundance Variations and Flows in Plage Regions Observed with CDS/SOHO

NASA Astrophysics Data System (ADS)

Rank, G.; Bagalá, L. G.; Czaykowska, A.; Haerendel, G.

1999-10-01

We present results from CDS/SOHO observations of the spotless active region NOAA-8208, obtained on 28th April 1998 near disk center. MDI images show a bipolar magnetic configuration. The regions of enhanced He I emission correspond to the areas with strong magnetic flux and also with bright plage areas seen in Ca II and H-alpha images. A high correlation is found between intensity maps of the transition region lines He I (logTmax = 4.3), O III (logTmax = 5.0), and O V (logTmax = 5.4). The line-of-sight velocities of He I reveal a strong downflow in the plage areas. Further, the line-of-sight velocities of He I, O III, and O V are well correlated, showing that the downflow pattern exists up to temperatures of about 0.25 MK. At higher temperatures (Mg VIII at logTmax = 5.8) this flow is not detected, suggesting that material streams into the plage region from sideways in the high transition region. Maps of the electron density in the transition region have been constructed from several line ratios yielding densities of about 9.0 cm-3 in the plage regions, about dex 0.5 cm-3 higher compared to the surrounding. To study the spatial variation of the first ionization potential (FIP) effect, the abundance ratio has been mapped for the ion ratio MgVI/NeVI. The ratio is highly variable on spatial scales down to a few arcsec from photospheric values to enhancements of a factor of 10. The strongest FIP enhancements are not correlated with transition region line emission, but are found outside of the plage regions. Some areas of strong FIP enhancement appear stretched and elongated, suggesting that the material is confined in loop-like structures.

Postfragmentation density function for bacterial aggregates in laminar flow

PubMed Central

Byrne, Erin; Dzul, Steve; Solomon, Michael; Younger, John

2014-01-01

The postfragmentation probability density of daughter flocs is one of the least well-understood aspects of modeling flocculation. We use three-dimensional positional data of Klebsiella pneumoniae bacterial flocs in suspension and the knowledge of hydrodynamic properties of a laminar flow field to construct a probability density function of floc volumes after a fragmentation event. We provide computational results which predict that the primary fragmentation mechanism for large flocs is erosion. The postfragmentation probability density function has a strong dependence on the size of the original floc and indicates that most fragmentation events result in clumps of one to three bacteria eroding from the original floc. We also provide numerical evidence that exhaustive fragmentation yields a limiting density inconsistent with the log-normal density predicted in the literature, most likely due to the heterogeneous nature of K. pneumoniae flocs. To support our conclusions, artificial flocs were generated and display similar postfragmentation density and exhaustive fragmentation. PMID:21599205

Disentangling road network impacts: The need for a holistic approach

USDA-ARS?s Scientific Manuscript database

Traditional and alternative energy development, logging and mining activities, together with off-highway vehicles (OHV) and exurban development, have increased the density of linear disturbances on public and private lands throughout the world. We argue that the dramatic increase in linear disturba...

A new estimation of HD/2H2 at high redshift using the spectrum of the quasar J 2123-0050

NASA Astrophysics Data System (ADS)

Klimenko, V. V.; Balashev, S. A.; Ivanchik, A. V.; Varshalovich, D. A.

2015-12-01

We present a new analysis of the quasar spectrum J 2123-0050 obtained using VLT/UVES. The H2/HD absorption system at z = 2.059 was analysed. This system consists of two subsystems with zA = 2.05933 and zB = 2.05955. The HD lines have been detected only in subsystem A with the column density of log N = 13.87 ± 0.06. We have determined the column density of H2 in this subsystem, log N = 17.93 ± 0.01, which is about three times larger than estimation derived early from analyses of quasar spectrum obtained using KECK/HIRES [1]. The derived ratio HD/2H2 = (4.28 ± 0.60) × 10-5 is the largest in quasar spectra, nevertheless it coincides with the primordial deuterium abundance within 2σ error. Additionally, we have found some evidence in the partial covering effect for the H2 system.

Ca II and Na I absorption in the QSO S4 0248 + 430 due to an intervening galaxy

NASA Technical Reports Server (NTRS)

Womble, Donna S.; Junkkarinen, Vesa T.; Cohen, Ross D.; Burbidge, E. Margaret

1990-01-01

Observations of the QSO S4 0248 + 430 and a nearby anonymous galaxy are presented. Two absorption components are found in both Ca II H and K and Na I D1 and D2 at z(a) = 0.0515, 0.0523. Column densities of log N(Ca II) = 13.29, 13.50, and log N(Na I) = 13.79, 14.18 are found for z(a) = 0.0515, 0.0523 absorption systems, respectively. The column density ratios imply considerable calcium depletion and disk-type absorbing gas. At least one and possibly both absorption components are produced by high-velocity gas. A broadband image of the field shows an asymmetrical armlike feature or possible tidal tail covering and extending past the position of the QSO. The presence of this extended feature and the apparent difference between the absorption velocities and galaxy rotation velocity suggest that the absorbing gas is not ordinary disk gas, but rather is a result of tidal disruption.

Population age and initial density in a patchy environment affect the occurrence of abrupt transitions in a birth-and-death model of Taylor's law

USGS Publications Warehouse

Jiang, Jiang; DeAngelis, Donald L.; Zhang, B.; Cohen, J.E.

2014-01-01

Taylor's power law describes an empirical relationship between the mean and variance of population densities in field data, in which the variance varies as a power, b, of the mean. Most studies report values of b varying between 1 and 2. However, Cohen (2014a) showed recently that smooth changes in environmental conditions in a model can lead to an abrupt, infinite change in b. To understand what factors can influence the occurrence of an abrupt change in b, we used both mathematical analysis and Monte Carlo samples from a model in which populations of the same species settled on patches, and each population followed independently a stochastic linear birth-and-death process. We investigated how the power relationship responds to a smooth change of population growth rate, under different sampling strategies, initial population density, and population age. We showed analytically that, if the initial populations differ only in density, and samples are taken from all patches after the same time period following a major invasion event, Taylor's law holds with exponent b=1, regardless of the population growth rate. If samples are taken at different times from patches that have the same initial population densities, we calculate an abrupt shift of b, as predicted by Cohen (2014a). The loss of linearity between log variance and log mean is a leading indicator of the abrupt shift. If both initial population densities and population ages vary among patches, estimates of b lie between 1 and 2, as in most empirical studies. But the value of b declines to ~1 as the system approaches a critical point. Our results can inform empirical studies that might be designed to demonstrate an abrupt shift in Taylor's law.

MID Plot: a new lithology technique. [Matrix identification plot

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clavier, C.; Rust, D.H.

1976-01-01

Lithology interpretation by the Litho-Porosity (M-N) method has been used for years, but is evidently too cumbersome and ambiguous for widespread acceptance as a field technique. To set aside these objections, another method has been devised. Instead of the log-derived parameters M and N, the MID Plot uses quasi-physical quantities, (rho/sub ma/)/sub a/ and (..delta..t/sub ma/)/sub a/, as its porosity-independent variables. These parameters, taken from suitably scaled Neutron-Density and Sonic-Neutron crossplots, define a unique matrix mineral or mixture for each point on the logs. The matrix points on the MID Plot thus remain constant in spite of changes in mudmore » filtrate, porosity, or neutron tool types (all of which significantly affect the M-N Plot). This new development is expected to bring welcome relief in areas where lithology identification is a routine part of log analysis.« less

Effects of a primordial magnetic field with log-normal distribution on the cosmic microwave background

NASA Astrophysics Data System (ADS)

Yamazaki, Dai G.; Ichiki, Kiyotomo; Takahashi, Keitaro

2011-12-01

We study the effect of primordial magnetic fields (PMFs) on the anisotropies of the cosmic microwave background (CMB). We assume the spectrum of PMFs is described by log-normal distribution which has a characteristic scale, rather than power-law spectrum. This scale is expected to reflect the generation mechanisms and our analysis is complementary to previous studies with power-law spectrum. We calculate power spectra of energy density and Lorentz force of the log-normal PMFs, and then calculate CMB temperature and polarization angular power spectra from scalar, vector, and tensor modes of perturbations generated from such PMFs. By comparing these spectra with WMAP7, QUaD, CBI, Boomerang, and ACBAR data sets, we find that the current CMB data set places the strongest constraint at k≃10-2.5Mpc-1 with the upper limit B≲3nG.

Lipophilicity Assessment of Ruthenium(II)-Arene Complexes by the Means of Reversed-Phase Thin-Layer Chromatography and DFT Calculations

PubMed Central

Shweshein, Khalil Salem A. M.; Andrić, Filip; Radoičić, Aleksandra; Gruden-Pavlović, Maja; Tešić, Živoslav; Milojković-Opsenica, Dušanka

2014-01-01

The lipophilicity of ten ruthenium(II)-arene complexes was assessed by reversed-phase thin-layer chromatography (RP-TLC) on octadecyl silica stationary phase. The binary solvent systems composed of water and acetonitrile were used as mobile phase in order to determine chromatographic descriptors for lipophilicity estimation. Octanol-water partition coefficient, logK OW, of tested complexes was experimentally determined using twenty-eight standard solutes which were analyzed under the same chromatographic conditions as target substances. In addition, ab initio density functional theory (DFT) computational approach was employed to calculate logK OW values from the differences in Gibbs' free solvation energies of the solute transfer from n-octanol to water. A good overall agreement between DFT calculated and experimentally determined logK OW values was established (R 2 = 0.8024–0.9658). PMID:24587761

Calculated in situ rock density from gravity observations, UA-1 (Cannikin) emplacement hole, Amchitka Island, Alaska

USGS Publications Warehouse

Healey, D.L.

1971-01-01

Gravity observations were made on the ground surface and at a depth of 5,854 feet in drill hole UA-1. Two attempts to measure the free-air gradient utilizing the headframe over the drill hole were unsuccessful owing to mechanical vibrations in the structure. Because of the uncertainty in the measured free-air gradients these values were discarded and the average value (0.09406 mgal/ft) was used in the calculations. The calculated in situ bulk density is 2.36 g/cc. The weighted average bulk density determined from 47 core samples taken in the adjacent UAE-1 drill hole is also 2.36 g/cc. An analysis of selected portions of density logs provides an in situ bulk density of 2.37 g/cc.

Critiquing ';pore connectivity' as basis for in situ flow in geothermal systems

NASA Astrophysics Data System (ADS)

Kenedi, C. L.; Leary, P.; Malin, P.

2013-12-01

Geothermal system in situ flow systematics derived from detailed examination of grain-scale structures, fabrics, mineral alteration, and pore connectivity may be extremely misleading if/when extrapolated to reservoir-scale flow structure. In oil/gas field clastic reservoir operations, it is standard to assume that small scale studies of flow fabric - notably the Kozeny-Carman and Archie's Law treatments at the grain-scale and well-log/well-bore sampling of formations/reservoirs at the cm-m scale - are adequate to define the reservoir-scale flow properties. In the case of clastic reservoirs, however, a wide range of reservoir-scale data wholly discredits this extrapolation: Well-log data show that grain-scale fracture density fluctuation power scales inversely with spatial frequency k, S(k) ~ 1/k^β, 1.0 < β < 1.2, 1cycle/km < k < 1cycle/cm; the scaling is a ';universal' feature of well-logs (neutron porosity, sonic velocity, chemical abundance, mass density, resistivity, in many forms of clastic rock and instances of shale bodies, for both horizontal and vertical wells). Grain-scale fracture density correlates with in situ porosity; spatial fluctuations of porosity φ in well-core correlate with spatial fluctuations in the logarithm of well-core permeability, δφ ~ δlog(κ) with typical correlation coefficient ~ 85%; a similar relation is observed in consolidating sediments/clays, indicating a generic coupling between fluid pressure and solid deformation at pore sites. In situ macroscopic flow systems are lognormally distributed according to κ ~ κ0 exp(α(φ-φ0)), α >>1 an empirical parameter for degree of in situ fracture connectivity; the lognormal distribution applies to well-productivities in US oil fields and NZ geothermal fields, ';frack productivity' in oil/gas shale body reservoirs, ore grade distributions, and trace element abundances. Although presently available evidence for these properties in geothermal reservoirs is limited, there are indications that geothermal system flow essentially obeys the same ';universal' in situ flow rules as does clastic rock: Well-log data from Los Azufres, MX, show power-law scaling S(k) ~ 1/k^β, 1.2 < β < 1.4, for spatial frequency range 2cycles/km to 0.5cycle/m; higher β-values are likely due to the relatively fresh nature of geothermal systems; Well-core at Bulalo (PH) and Ohaaki (NZ) show statistically significant spatial correlation, δφ ~ δlog(κ) Well productivity at Ohaaki/Ngawha (NZ) and in geothermal systems elsewhere are lognormally distributed; K/Th/U abundances lognormally distributed in Los Azufres well-logs We therefore caution that small-scale evidence for in situ flow fabric in geothermal systems that is interpreted in terms of ';pore connectivity' may in fact not reflect how small-scale chemical processes are integrated into a large-scale geothermal flow structure. Rather such small scale studies should (perhaps) be considered in term of the above flow rules. These flow rules are easily incorporated into standard flow simulation codes, in particular the OPM = Open Porous Media open-source industry-standard flow code. Geochemical transport data relevant to geothermal systems can thus be expected to be well modeled by OPM or equivalent (e.g., INL/LANL) codes.

Statistics of Advective Stretching in Three-dimensional Incompressible Flows

NASA Astrophysics Data System (ADS)

Subramanian, Natarajan; Kellogg, Louise H.; Turcotte, Donald L.

2009-09-01

We present a method to quantify kinematic stretching in incompressible, unsteady, isoviscous, three-dimensional flows. We extend the method of Kellogg and Turcotte (J. Geophys. Res. 95:421-432, 1990) to compute the axial stretching/thinning experienced by infinitesimal ellipsoidal strain markers in arbitrary three-dimensional incompressible flows and discuss the differences between our method and the computation of Finite Time Lyapunov Exponent (FTLE). We use the cellular flow model developed in Solomon and Mezic (Nature 425:376-380, 2003) to study the statistics of stretching in a three-dimensional unsteady cellular flow. We find that the probability density function of the logarithm of normalised cumulative stretching (log S) for a globally chaotic flow, with spatially heterogeneous stretching behavior, is not Gaussian and that the coefficient of variation of the Gaussian distribution does not decrease with time as t^{-1/2} . However, it is observed that stretching becomes exponential log S˜ t and the probability density function of log S becomes Gaussian when the time dependence of the flow and its three-dimensionality are increased to make the stretching behaviour of the flow more spatially uniform. We term these behaviors weak and strong chaotic mixing respectively. We find that for strongly chaotic mixing, the coefficient of variation of the Gaussian distribution decreases with time as t^{-1/2} . This behavior is consistent with a random multiplicative stretching process.

Geopressured-geothermal test of the EDNA Delcambre No. 1 well, Vermilion Parish, Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wieland, D.R.; Meriwether, J.

1977-11-16

Two sand intervals, Sand No. 3 and Sand No. 1, were independently tested during our program. Sand No. 3 was the deepeer zone and was tested first. A gamma ray--neutron log of these zones, and the intervals perforated, are shown. The gamma ray log run in 1968 showed Sand No. 1 to be a fairly uniform section with few shale breaks and our original plans were to perforate the entire interval. After obtaining the more recent GR log big shale breaks were shown to exist throughout the zone, so a smaller interval was selected. A net sand thickness of 48more » ft. was used for Sand No. 3 and 30 ft. for Sand No. 1. There was no data available to indicate whether these zones became thicker or thinner away from the wellbore; therefore, these values were used as net thickness in the reservoir calculations. The procedure used to perforate the two sands were different. Both were perforated with 0.33 inch jets at a density of 4 shots per foot; however, Sand No. 3 was perforated in two runs using a stand-off gun, whereas Sand No. 1 was perforated in one run using a centralized gun with the jet density being 4 shots per foot but oriented alternately at 180 degrees.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beiersdorfer, P.; Hell, N.; Lepson, J. K.

We identified a previously unassigned pair of lines between 169 and 170 Å in the coronae of cool stars. Here, we attribute these lines to Fe xiv and show that their intensity ratio is sensitive to the electron density. Using observations taken with the Low Energy Transmission Grating Spectrometer of the Chandra X-ray Observatory we infer a density of log (n e/cm -3) = 10.2 ± 0.7 and 10.3 ± 0.8 from the newly identified line pair in the coronae of Procyon and α Cen A, respectively.

A New Method for the Determination of Annual Sediment Fluxes from Varved Lake Sediments

NASA Astrophysics Data System (ADS)

Francus, P.; Massa, C.; Lapointe, F.

2013-12-01

Calculation of sediment mass accumulation rates instead of thickness accumulation is preferable for paleoclimatic reconstruction as it eliminates the effects of dilution and compaction. Annually laminated lake sediment sequences (varved) theoretically allow for the estimation of sediment fluxes at annual scale, but the calculation is limited by discrete bulk density measurements, often carried out at a much lower resolution (usually 1 cm) than the varves (ranging from 0.07 to 27.3 mm, average 1.84 mm according to Ojala et al. 2012). Since many years the development of automated logging instruments made available continuous and high resolution sediment property data, in a non-destructive fashion. These techniques can easily be used to extract the physical and chemical parameters of sediments at the varve scale (down to 100 μm). Here we present a robust method to calculate annual sediment fluxes from varved lake sediments by combining varves thickness measurements to core logging data, and provide an example for its applications. Several non-destructive densitometric methods applied to the Strathcona Lake sediment, northern Ellesmere Island, Canada (78°33'N; 82°05'W) were compared: Hounsfield Units from a CT-Scan, coherent/incoherent ratio and X-ray radiography (of both split core and sediment slabs, from an Itrax core Scanner), and gamma ray attenuation density. Core logging data were statistically compared to 400 discrete measurements of dry bulk density, wet bulk density and water content performed at 2 mm contiguous intervals. A very strong relationship was found between X-ray grey level on sediment slab and dry bulk density. Relative X-ray densities, at 100μm resolution, were then successfully calibrated against real densities. The final step consisted in binning the calibrated densities to the corresponding varve thickness and then to calculate the annual mass accumulation rates by multiplying the two parameters for each varve year. Strathcona Lake is located directly downstream of the Agassiz ice cap and contains laminated sediments whose accumulation is directly related to hydrological inputs generated by the melting of the ice cap. Over the last 65 years, annual sediment accumulation rates in Strathcona Lake documented an increase in high-energy hydrologic discharge events from 1990 to 2009. This timing is in agreement with evidence for an increase in the amount of melt on the adjacent Agassiz Ice Cap, as recorded in ice cores. A good correspondence was also found between annual mass accumulation rates and Eureka air temperature records, suggesting that temperature changes affected the extent of summer melting on the Agassiz Ice Cap, leading to high sediment yield to Strathcona Lake. Ojala, A.E.K., Francus, P., Zolitschka, B., Besonen, M. and Lamoureux, S.F. (2012) Characteristics of sedimentary varve chronologies - A review. Quaternary Science Reviews, 43, 45-60.

Mechanisms of action of (meth)acrylates in hemolytic activity, in vivo toxicity and dipalmitoylphosphatidylcholine (DPPC) liposomes determined using NMR spectroscopy.

PubMed

Fujisawa, Seiichiro; Kadoma, Yoshinori

2012-01-01

We investigated the quantitative structure-activity relationships between hemolytic activity (log 1/H(50)) or in vivo mouse intraperitoneal (ip) LD(50) using reported data for α,β-unsaturated carbonyl compounds such as (meth)acrylate monomers and their (13)C-NMR β-carbon chemical shift (δ). The log 1/H(50) value for methacrylates was linearly correlated with the δC(β) value. That for (meth)acrylates was linearly correlated with log P, an index of lipophilicity. The ipLD(50) for (meth)acrylates was linearly correlated with δC(β) but not with log P. For (meth)acrylates, the δC(β) value, which is dependent on the π-electron density on the β-carbon, was linearly correlated with PM3-based theoretical parameters (chemical hardness, η; electronegativity, χ; electrophilicity, ω), whereas log P was linearly correlated with heat of formation (HF). Also, the interaction between (meth)acrylates and DPPC liposomes in cell membrane molecular models was investigated using (1)H-NMR spectroscopy and differential scanning calorimetry (DSC). The log 1/H(50) value was related to the difference in chemical shift (ΔδHa) (Ha: H (trans) attached to the β-carbon) between the free monomer and the DPPC liposome-bound monomer. Monomer-induced DSC phase transition properties were related to HF for monomers. NMR chemical shifts may represent a valuable parameter for investigating the biological mechanisms of action of (meth)acrylates.

Mechanisms of Action of (Meth)acrylates in Hemolytic Activity, in Vivo Toxicity and Dipalmitoylphosphatidylcholine (DPPC) Liposomes Determined Using NMR Spectroscopy

PubMed Central

Fujisawa, Seiichiro; Kadoma, Yoshinori

2012-01-01

We investigated the quantitative structure-activity relationships between hemolytic activity (log 1/H50) or in vivo mouse intraperitoneal (ip) LD50 using reported data for α,β-unsaturated carbonyl compounds such as (meth)acrylate monomers and their 13C-NMR β-carbon chemical shift (δ). The log 1/H50 value for methacrylates was linearly correlated with the δCβ value. That for (meth)acrylates was linearly correlated with log P, an index of lipophilicity. The ipLD50 for (meth)acrylates was linearly correlated with δCβ but not with log P. For (meth)acrylates, the δCβ value, which is dependent on the π-electron density on the β-carbon, was linearly correlated with PM3-based theoretical parameters (chemical hardness, η; electronegativity, χ; electrophilicity, ω), whereas log P was linearly correlated with heat of formation (HF). Also, the interaction between (meth)acrylates and DPPC liposomes in cell membrane molecular models was investigated using 1H-NMR spectroscopy and differential scanning calorimetry (DSC). The log 1/H50 value was related to the difference in chemical shift (ΔδHa) (Ha: H (trans) attached to the β-carbon) between the free monomer and the DPPC liposome-bound monomer. Monomer-induced DSC phase transition properties were related to HF for monomers. NMR chemical shifts may represent a valuable parameter for investigating the biological mechanisms of action of (meth)acrylates. PMID:22312284

C III spectra in WC Wolf-Rayet stars - Does collisional excitation dominate?

NASA Technical Reports Server (NTRS)

Kastner, S. O.; Bhatia, A. K.

1993-01-01

A direct comparison of the spectra emitted by an improved collisionally excited C III atomic model, with observations of C III spectra in Wolf-Rayet WC stars, shows agreement for UV, visible, and near-infrared lines including lines usually considered to be recombination lines. The agreement implies high-density and temperature source conditions corresponding to log (Ne Te) is greater than 16 as a lower limit, whereas most current modeling assumes log (Ne Te) is less than 15.5. This raises questions concerning the photoionization/recombination assumptions on which most WR modeling is based. Recent models are discussed from this point of view.

Parameters controlling mechanical stratification of gas-bearing shale complexes: integration of wellbore logging and core profiling (Peri-Baltic Basin, Poland).

NASA Astrophysics Data System (ADS)

Pachytel, Radomir; Jarosiński, Marek; Bobek, Kinga; Roszkowska-Remin, Joanna; Roman, Michał

2016-04-01

In our study of mechanical properties of gas-bearing shale complexes from exploration wells in Pomerania, we take advantage from having access to continuous, several hundred meters long core profiles which are supplemented with complete sets of geophysical logging from the same shale intervals. We are focused on different approaches to discriminate the Consistent Mechanical Units (CMUs). Such units are essential for mechanical modeling of stress and strain in shales and their scale is highly dependent on the purpose of analyses. We have done a precise lithological and structural core profiling, which results in distinguishing Consistent Lithological Units (CLUs) at a centimeter scale. The geophysical logs, essential for mechanical studies, exhibit resolution from tens of centimeters to a meter. The meter resolution we have found appropriate for consideration of mechanics of hydraulic fracture propagation and therefore we have used it in CMUs analysis. The first challenge we have faced is to switch between scales of analyses without significant losses of information coming from the lower level of observation. The next challenge, is to find the mechanical parameter which is able to discriminate CMUs most efficiently. Brittleness Indexes (BIs) are commonly used parameters in order to characterize mechanical shale units, but at the same time these indexes are arbitrary defined to match individual requirements of the users. In our study, we have determined the BIs in several ways, based either on mineral composition or on elastic modules, both supplemented with pore volume. The gamma ray (GR), Young modulus (YM), Poisson Ratio (ν) interpretation from acoustic logging, bulk density (RHOB), porosity interpretation (ø) and mineralogical profile (ULTRA, GEM) from spectral logging were computed. Detailed comparison of lithological profile and discriminated CLUs with above logs led us to conclusions about geophysical representation of dolomite and silica lithified shale, organic matter enrichment tuffite layers or disturbances in lamination, which are important for mechanical differentiation of shale complexes. Finally, we have checked which of the calculated BIs matches best the lithological differentiation and the natural fracture density profile that allowed us for selection of the BI which, in our opinion, represents the potential for hydraulic fracture propagation. Our study in the frame of ShaleMech Project (Blue Gas Program) is in progress and the results are preliminary.

Estimating Effective Seismic Anisotropy Of Coal Seam Gas Reservoirs from Sonic Log Data Using Orthorhombic Buckus-style Upscaling

NASA Astrophysics Data System (ADS)

Gross, Lutz; Tyson, Stephen

2015-04-01

Fracture density and orientation are key parameters controlling productivity of coal seam gas reservoirs. Seismic anisotropy can help to identify and quantify fracture characteristics. In particular, wide offset and dense azimuthal coverage land seismic recordings offers the opportunity for recovery of anisotropy parameters. In many coal seam gas reservoirs (eg. Walloon Subgroup in the Surat Basin, Queensland, Australia (Esterle et al. 2013)) the thickness of coal-beds and interbeds (e.g mud-stone) are well below the seismic wave length (0.3-1m versus 5-15m). In these situations, the observed seismic anisotropy parameters represent effective elastic properties of the composite media formed of fractured, anisotropic coal and isotropic interbed. As a consequence observed seismic anisotropy cannot directly be linked to fracture characteristics but requires a more careful interpretation. In the paper we will discuss techniques to estimate effective seismic anisotropy parameters from well log data with the objective to improve the interpretation for the case of layered thin coal beds. In the first step we use sonic log data to reconstruct the elasticity parameters as function of depth (at the resolution of the sonic log). It is assumed that within a sample fractures are sparse, of the same size and orientation, penny-shaped and equally spaced. Following classical fracture model this can be modeled as an elastic horizontally transversely isotropic (HTI) media (Schoenberg & Sayers 1995). Under the additional assumption of dry fractures, normal and tangential fracture weakness is estimated from slow and fast shear wave velocities of the sonic log. In the second step we apply Backus-style upscaling to construct effective anisotropy parameters on an appropriate length scale. In order to honor the HTI anisotropy present at each layer we have developed a new extension of the classical Backus averaging for layered isotropic media (Backus 1962) . Our new method assumes layered HTI media with constant anisotropy orientation as recovered in the first step. It leads to an effective horizontal orthorhombic elastic model. From this model Thomsen-style anisotropy parameters are calculated to derive azimuth-dependent normal move out (NMO) velocities (see Grechka & Tsvankin 1998). In our presentation we will show results of our approach from sonic well logs in the Surat Basin to investigate the potential of reconstructing S-wave velocity anisotropy and fracture density from azimuth dependent NMO velocities profiles.

Characterization of methane-hydrate formation inferred from insitu Vp-density relationship for hydrate-bearing sediment cores obtained off the eastern coast of India

NASA Astrophysics Data System (ADS)

Kinoshita, M.; Hamada, Y.; Hirose, T.; Yamada, Y.

2017-12-01

In 2015, the Indian National Gas Hydrate Program (NGHP) Drilling Expedition 02 was carried out off the eastern margin of the Indian Peninsula in order to investigate distribution and occurrence of gas hydrates. From 25 drill sites, downhole logging data, cored samples, and drilling performance data were collected. One of the target areas (area B) is located on the axial and flank of an anticline, where the BSR is identified 100 m beneath the summit of anticline. 3 sites were drilled in the crest. The lower potential hydrate zone II was suggested by downhole logging (LWD) at 270-290 m below seafloor across the top of anticline. Core samples from this interval is characterized by a higher natural gamma radiation, gamma-ray-based higher bulk density and lower porosity, and higher electrical resistivity. All these features are in good agreement with LWD results. During this expedition, numerous special core sampling operations (PCAT) were carried out, keeping its insitu pressure in a pressure-tight vessel. They enabled acquiring insitu P-wave velocity and gamma-ray attenuation density measurements. In-situ X-CT images exhibit very clear hydrate distribution as lower density patches. Hydrate-bearing sediments exhibit a Vp-density trend that is clearly different from the ordinary formation. Vp values are significantly higher than 2 km/s whereas the density remains constant at 2-2.2 g/cm3 in hydrate zones. At some hydrate-bearing sediments, we noticed that Vp is negatively correlated to the density in the deeper portion (235-285 mbsf). On the other hand, in the shallower portion they are positively correlated. From lithostratigraphy the shallower portion consists of sand, whereas deeper portion are silty-clay dominant. We infer that the sand-dominant, shallower hydrate is a pore-filling type, and Vp is correlated positively to density. On the other hand, the clay-dominant, deeper hydrate is filled in vertical veins, and Vp is negatively correlated to density. Negative correlation may be explained by a (partial) replacement of pore water with hydrate because the density of hydrate is lower than the water.

Spectral Density of Laser Beam Scintillation in Wind Turbulence. Part 1; Theory

NASA Technical Reports Server (NTRS)

Balakrishnan, A. V.

1997-01-01

The temporal spectral density of the log-amplitude scintillation of a laser beam wave due to a spatially dependent vector-valued crosswind (deterministic as well as random) is evaluated. The path weighting functions for normalized spectral moments are derived, and offer a potential new technique for estimating the wind velocity profile. The Tatarskii-Klyatskin stochastic propagation equation for the Markov turbulence model is used with the solution approximated by the Rytov method. The Taylor 'frozen-in' hypothesis is assumed for the dependence of the refractive index on the wind velocity, and the Kolmogorov spectral density is used for the refractive index field.

zCOSMOS - 10k-bright spectroscopic sample. The bimodality in the galaxy stellar mass function: exploring its evolution with redshift

NASA Astrophysics Data System (ADS)

Pozzetti, L.; Bolzonella, M.; Zucca, E.; Zamorani, G.; Lilly, S.; Renzini, A.; Moresco, M.; Mignoli, M.; Cassata, P.; Tasca, L.; Lamareille, F.; Maier, C.; Meneux, B.; Halliday, C.; Oesch, P.; Vergani, D.; Caputi, K.; Kovač, K.; Cimatti, A.; Cucciati, O.; Iovino, A.; Peng, Y.; Carollo, M.; Contini, T.; Kneib, J.-P.; Le Févre, O.; Mainieri, V.; Scodeggio, M.; Bardelli, S.; Bongiorno, A.; Coppa, G.; de la Torre, S.; de Ravel, L.; Franzetti, P.; Garilli, B.; Kampczyk, P.; Knobel, C.; Le Borgne, J.-F.; Le Brun, V.; Pellò, R.; Perez Montero, E.; Ricciardelli, E.; Silverman, J. D.; Tanaka, M.; Tresse, L.; Abbas, U.; Bottini, D.; Cappi, A.; Guzzo, L.; Koekemoer, A. M.; Leauthaud, A.; Maccagni, D.; Marinoni, C.; McCracken, H. J.; Memeo, P.; Porciani, C.; Scaramella, R.; Scarlata, C.; Scoville, N.

2010-11-01

We present the galaxy stellar mass function (GSMF) to redshift z ≃ 1, based on the analysis of about 8500 galaxies with I < 22.5 (AB mag) over 1.4 deg2, which are part of the zCOSMOS-bright 10k spectroscopic sample. We investigate the total GSMF, as well as the contributions of early- and late-type galaxies (ETGs and LTGs, respectively), defined by different criteria (broad-band spectral energy distribution, morphology, spectral properties, or star formation activities). We unveil a galaxy bimodality in the global GSMF, whose shape is more accurately represented by 2 Schechter functions, one linked to the ETG and the other to the LTG populations. For the global population, we confirm a mass-dependent evolution (“mass-assembly downsizing”), i.e., galaxy number density increases with cosmic time by a factor of two between z = 1 and z = 0 for intermediate-to-low mass (log (ℳ/ℳ⊙) ~ 10.5) galaxies but less than 15% for log(ℳ/ℳ⊙) > 11. We find that the GSMF evolution at intermediate-to-low values of ℳ (log (ℳ/ℳ⊙) < 10.6) is mostly explained by the growth in stellar mass driven by smoothly decreasing star formation activities, despite the redder colours predicted in particular at low redshift. The low residual evolution is consistent, on average, with ~0.16 merger per galaxy per Gyr (of which fewer than 0.1 are major), with a hint of a decrease with cosmic time but not a clear dependence on the mass. From the analysis of different galaxy types, we find that ETGs, regardless of the classification method, increase in number density with cosmic time more rapidly with decreasing M, i.e., follow a top-down building history, with a median “building redshift” increasing with mass (z > 1 for log(ℳ/ℳ⊙) > 11), in contrast to hierarchical model predictions. For LTGs, we find that the number density of blue or spiral galaxies with log(ℳ/ℳ⊙) > 10 remains almost constant with cosmic time from z ~ 1. Instead, the most extreme population of star-forming galaxies (with high specific star formation), at intermediate/high-mass, rapidly decreases in number density with cosmic time. Our data can be interpreted as a combination of different effects. Firstly, we suggest a transformation, driven mainly by SFH, from blue, active, spiral galaxies of intermediate mass to blue quiescent and subsequently (1-2 Gyr after) red, passive types of low specific star formation. We find an indication that the complete morphological transformation, probably driven by dynamical processes, into red spheroidal galaxies, occurred on longer timescales or followed after 1-2 Gyr. A continuous replacement of blue galaxies is expected to be accomplished by low-mass active spirals increasing their stellar mass. We estimate the growth rate in number and mass density of the red galaxies at different redshifts and masses. The corresponding fraction of blue galaxies that, at any given time, is transforming into red galaxies per Gyr, due to the quenching of their SFR, is on average ~25% for log(ℳ/ℳ⊙) < 11. We conclude that the build-up of galaxies and in particular of ETGs follows the same downsizing trend with mass (i.e. occurs earlier for high-mass galaxies) as the formation of their stars and follows the converse of the trend predicted by current SAMs. In this scenario, we expect there to be a negligible evolution of the galaxy baryonic mass function (GBMF) for the global population at all masses and a decrease with cosmic time in the GBMF for the blue galaxy population at intermediate-high masses. Based on data obtained with the European Southern Observatory Very Large Telescope, Paranal, Chile, program 175.A-0839.

Evidence of Long Range Dependence and Self-similarity in Urban Traffic Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thakur, Gautam S; Helmy, Ahmed; Hui, Pan

2015-01-01

Transportation simulation technologies should accurately model traffic demand, distribution, and assignment parame- ters for urban environment simulation. These three param- eters significantly impact transportation engineering bench- mark process, are also critical in realizing realistic traffic modeling situations. In this paper, we model and charac- terize traffic density distribution of thousands of locations around the world. The traffic densities are generated from millions of images collected over several years and processed using computer vision techniques. The resulting traffic den- sity distribution time series are then analyzed. It is found using the goodness-of-fit test that the traffic density dis- tributions follows heavy-tailmore » models such as Log-gamma, Log-logistic, and Weibull in over 90% of analyzed locations. Moreover, a heavy-tail gives rise to long-range dependence and self-similarity, which we studied by estimating the Hurst exponent (H). Our analysis based on seven different Hurst estimators strongly indicate that the traffic distribution pat- terns are stochastically self-similar (0.5 H 1.0). We believe this is an important finding that will influence the design and development of the next generation traffic simu- lation techniques and also aid in accurately modeling traffic engineering of urban systems. In addition, it shall provide a much needed input for the development of smart cities.« less

ADULT COHO SALMON AND STEELHEAD USE OF BOULDER WEIRS IN SOUTHWEST OREGON STREAMS

EPA Science Inventory

The placement of log and boulder structures in streams is a common and often effective technique for improving juvenile salmonid rearing habitat and increasing fish densities. Less frequently examined has been the use of these structures by adult salmonids. In 2004, spawner densi...

Microbial risk assessment with the OAEL approach at water abstraction points in rural Kenya

NASA Astrophysics Data System (ADS)

Yillia, Paul T.; Kreuzinger, Norbert; Mathooko, Jude M.; Ndomahina, Ernest T.

US-based models for recreational water quality were applied to characterize the potential health risk (PHR) of infection with gastroenteritis (GI) and highly credible gastroenteritis (HCGI) illnesses from single exposure at several water abstraction points (WAPs) along the Njoro River in rural Kenya. Ambient geometric mean densities of Escherichia coli (EC) and intestinal enterococci (IE) were generally high (2-4 log units of cfu/100 ml) and risk levels were grossly in excess of acceptable health risk (AHR) levels for bathing and drinking. PHR was 2-3 times higher with the Cabelli (IE) model (Equation (2)) compared to the US EPA (EC) model (Equation (1)). Risk levels varied among WAPs in concomitance to the spatial and seasonal variability of ambient EC and IE densities. With the Cabelli IE model, PHR of HCGI illness on single exposure to the dry weather 95th percentile IE density for bathing was 2.5% of the exposed population at Logoman compared to 5.2% at Turkana Flats, 4.9% at Kenyatta or Nessuit and 4.6%, 4.5% and 4.2% at Treetop, Segotik and Njoro Bridge, respectively. PHR was ⩾5% on exposure to the wet weather 95th percentile IE density at all WAPs, excepting Treetop with 4.3%. Relative risk levels increased by at least 30 and 70 times for GI and HCGI illnesses, respectively, from drinking (250 ml) raw stream water, rising erratically in wet weather by >80% of the dry weather risk at Logoman, >30% at Njoro Bridge and Kenyatta and 10-15% at Segotik, Nessuit and Turkana Flats. By stipulating freshwater bathing water quality guidelines of 126 and 33 cfu/100 ml for EC and IE, respectively, US, EPA upholds maximum AHR levels at 0.7% and 1.9% for EC and IE, respectively. Hence, reducing current PHR levels at the WAPs to the US, EPA bathing AHR levels would require at least 2-4 log reductions of IE and EC densities with even further log reductions to achieve the WHO recommended drinking water AHR level of 0.1%. This would necessitate specialized treatment, in particular point-of-use treatment at the household level, as well as the implementation of comprehensive catchment management measures to protect the stream and the WAPs.

The X-Ray and Mid-infrared Luminosities in Luminous Type 1 Quasars

NASA Astrophysics Data System (ADS)

Chen, Chien-Ting J.; Hickox, Ryan C.; Goulding, Andrew D.; Stern, Daniel; Assef, Roberto; Kochanek, Christopher S.; Brown, Michael J. I.; Harrison, Chris M.; Hainline, Kevin N.; Alberts, Stacey; Alexander, David M.; Brodwin, Mark; Del Moro, Agnese; Forman, William R.; Gorjian, Varoujan; Jones, Christine; Murray, Stephen S.; Pope, Alexandra; Rovilos, Emmanouel

2017-03-01

Several recent studies have reported different intrinsic correlations between the active galactic nucleus (AGN) mid-IR luminosity ({L}MIR}) and the rest-frame 2–10 keV luminosity (L X) for luminous quasars. To understand the origin of the difference in the observed {L}{{X}}{--}{L}MIR} relations, we study a sample of 3247 spectroscopically confirmed type 1 AGNs collected from Boötes, XMM-COSMOS, XMM-XXL-North, and the Sloan Digital Sky Survey quasars in the Swift/XRT footprint spanning over four orders of magnitude in luminosity. We carefully examine how different observational constraints impact the observed {L}{{X}}{--}{L}MIR} relations, including the inclusion of X-ray-nondetected objects, possible X-ray absorption in type 1 AGNs, X-ray flux limits, and star formation contamination. We find that the primary factor driving the different {L}{{X}}{--}{L}MIR} relations reported in the literature is the X-ray flux limits for different studies. When taking these effects into account, we find that the X-ray luminosity and mid-IR luminosity (measured at rest-frame 6 μ {{m}}, or {L}6μ {{m}}) of our sample of type 1 AGNs follow a bilinear relation in the log–log plane: {log}{L}{{X}}=(0.84+/- 0.03)× {log}{L}6μ {{m}}/{10}45 erg s‑1 + (44.60 ± 0.01) for {L}6μ {{m}}< {10}44.79 erg s‑1, and {log}{L}{{X}}=(0.40+/- 0.03)× {log}{L}6μ {{m}}/{10}45 erg s‑1 + (44.51 ± 0.01) for {L}6μ {{m}} ≥slant {10}44.79 erg s‑1. This suggests that the luminous type 1 quasars have a shallower {L}{{X}}{--}{L}6μ {{m}} correlation than the approximately linear relations found in local Seyfert galaxies. This result is consistent with previous studies reporting a luminosity-dependent {L}{{X}}{--}{L}MIR} relation and implies that assuming a linear {L}{{X}}{--}{L}6μ {{m}} relation to infer the neutral gas column density for X-ray absorption might overestimate the column densities in luminous quasars.

Effects of seed predators of different body size on seed mortality in Bornean logged forest.

PubMed

Hautier, Yann; Saner, Philippe; Philipson, Christopher; Bagchi, Robert; Ong, Robert C; Hector, Andy

2010-07-19

The Janzen-Connell hypothesis proposes that seed and seedling enemies play a major role in maintaining high levels of tree diversity in tropical forests. However, human disturbance may alter guilds of seed predators including their body size distribution. These changes have the potential to affect seedling survival in logged forest and may alter forest composition and diversity. We manipulated seed density in plots beneath con- and heterospecific adult trees within a logged forest and excluded vertebrate predators of different body sizes using cages. We show that small and large-bodied predators differed in their effect on con- and heterospecific seedling mortality. In combination small and large-bodied predators dramatically decreased both con- and heterospecific seedling survival. In contrast, when larger-bodied predators were excluded small-bodied predators reduced conspecific seed survival leaving seeds coming from the distant tree of a different species. Our results suggest that seed survival is affected differently by vertebrate predators according to their body size. Therefore, changes in the body size structure of the seed predator community in logged forests may change patterns of seed mortality and potentially affect recruitment and community composition.

Effects of Seed Predators of Different Body Size on Seed Mortality in Bornean Logged Forest

PubMed Central

Hautier, Yann; Saner, Philippe; Philipson, Christopher; Bagchi, Robert; Ong, Robert C.; Hector, Andy

2010-01-01

Background The Janzen-Connell hypothesis proposes that seed and seedling enemies play a major role in maintaining high levels of tree diversity in tropical forests. However, human disturbance may alter guilds of seed predators including their body size distribution. These changes have the potential to affect seedling survival in logged forest and may alter forest composition and diversity. Methodology/Principal Findings We manipulated seed density in plots beneath con- and heterospecific adult trees within a logged forest and excluded vertebrate predators of different body sizes using cages. We show that small and large-bodied predators differed in their effect on con- and heterospecific seedling mortality. In combination small and large-bodied predators dramatically decreased both con- and heterospecific seedling survival. In contrast, when larger-bodied predators were excluded small-bodied predators reduced conspecific seed survival leaving seeds coming from the distant tree of a different species. Conclusions/Significance Our results suggest that seed survival is affected differently by vertebrate predators according to their body size. Therefore, changes in the body size structure of the seed predator community in logged forests may change patterns of seed mortality and potentially affect recruitment and community composition. PMID:20657841

Modelling uveal melanoma

PubMed Central

Foss, A.; Cree, I.; Dolin, P.; Hungerford, J.

1999-01-01

BACKGROUND/AIM—There has been no consistent pattern reported on how mortality for uveal melanoma varies with age. This information can be useful to model the complexity of the disease. The authors have examined ocular cancer trends, as an indirect measure for uveal melanoma mortality, to see how rates vary with age and to compare the results with their other studies on predicting metastatic disease.
METHODS—Age specific mortality was examined for England and Wales, the USA, and Canada. A log-log model was fitted to the data. The slopes of the log-log plots were used as measure of disease complexity and compared with the results of previous work on predicting metastatic disease.
RESULTS—The log-log model provided a good fit for the US and Canadian data, but the observed rates deviated for England and Wales among people over the age of 65 years. The log-log model for mortality data suggests that the underlying process depends upon four rate limiting steps, while a similar model for the incidence data suggests between three and four rate limiting steps. Further analysis of previous data on predicting metastatic disease on the basis of tumour size and blood vessel density would indicate a single rate limiting step between developing the primary tumour and developing metastatic disease.
CONCLUSIONS—There is significant underreporting or underdiagnosis of ocular melanoma for England and Wales in those over the age of 65 years. In those under the age of 65, a model is presented for ocular melanoma oncogenesis requiring three rate limiting steps to develop the primary tumour and a fourth rate limiting step to develop metastatic disease. The three steps in the generation of the primary tumour involve two key processes—namely, growth and angiogenesis within the primary tumour. The step from development of the primary to development of metastatic disease is likely to involve a single rate limiting process.

 PMID:10216060

Gas hydrate saturation from acoustic impedance and resistivity logs in the shenhu area, south china sea

USGS Publications Warehouse

Wang, X.; Wu, S.; Lee, M.; Guo, Y.; Yang, S.; Liang, J.

2011-01-01

During the China's first gas hydrate drilling expedition -1 (GMGS-1), gas hydrate was discovered in layers ranging from 10 to 25 m above the base of gas hydrate stability zone in the Shenhu area, South China Sea. Water chemistry, electrical resistivity logs, and acoustic impedance were used to estimate gas hydrate saturations. Gas hydrate saturations estimated from the chloride concentrations range from 0 to 43% of the pore space. The higher gas hydrate saturations were present in the depth from 152 to 177 m at site SH7 and from 190 to 225 m at site SH2, respectively. Gas hydrate saturations estimated from the resistivity using Archie equation have similar trends to those from chloride concentrations. To examine the variability of gas hydrate saturations away from the wells, acoustic impedances calculated from the 3 D seismic data using constrained sparse inversion method were used. Well logs acquired at site SH7 were incorporated into the inversion by establishing a relation between the water-filled porosity, calculated using gas hydrate saturations estimated from the resistivity logs, and the acoustic impedance, calculated from density and velocity logs. Gas hydrate saturations estimated from acoustic impedance of seismic data are ???10-23% of the pore space and are comparable to those estimated from the well logs. The uncertainties in estimated gas hydrate saturations from seismic acoustic impedances were mainly from uncertainties associated with inverted acoustic impedance, the empirical relation between the water-filled porosities and acoustic impedances, and assumed background resistivity. ?? 2011 Elsevier Ltd.

Statistical analysis of variability properties of the Kepler blazar W2R 1926+42

NASA Astrophysics Data System (ADS)

Li, Yutong; Hu, Shaoming; Wiita, Paul J.; Gupta, Alok C.

2018-04-01

We analyzed Kepler light curves of the blazar W2R 1926+42 that provided nearly continuous coverage from quarter 11 through quarter 17 (589 days between 2011 and 2013) and examined some of their flux variability properties. We investigate the possibility that the light curve is dominated by a large number of individual flares and adopt exponential rise and decay models to investigate the symmetry properties of flares. We found that those variations of W2R 1926+42 are predominantly asymmetric with weak tendencies toward positive asymmetry (rapid rise and slow decay). The durations (D) and the amplitudes (F0) of flares can be fit with log-normal distributions. The energy (E) of each flare is also estimated for the first time. There are positive correlations between logD and logE with a slope of 1.36, and between logF0 and logE with a slope of 1.12. Lomb-Scargle periodograms are used to estimate the power spectral density (PSD) shape. It is well described by a power law with an index ranging between -1.1 and -1.5. The sizes of the emission regions, R, are estimated to be in the range of 1.1 × 1015cm - 6.6 × 1016cm. The flare asymmetry is difficult to explain by a light travel time effect but may be caused by differences between the timescales for acceleration and dissipation of high-energy particles in the relativistic jet. A jet-in-jet model also could produce the observed log-normal distributions.

Objective straylight assessment of the human eye with a novel device

NASA Astrophysics Data System (ADS)

Schramm, Stefan; Schikowski, Patrick; Lerm, Elena; Kaeding, André; Klemm, Matthias; Haueisen, Jens; Baumgarten, Daniel

2016-03-01

Forward scattered light from the anterior segment of the human eye can be measured by Shack-Hartmann (SH) wavefront aberrometers with limited visual angle. We propose a novel Point Spread Function (PSF) reconstruction algorithm based on SH measurements with a novel measurement devise to overcome these limitations. In our optical setup, we use a Digital Mirror Device as variable field stop, which is conventionally a pinhole suppressing scatter and reflections. Images with 21 different stop diameters were captured and from each image the average subaperture image intensity and the average intensity of the pupil were computed. The 21 intensities represent integral values of the PSF which is consequently reconstructed by derivation with respect to the visual angle. A generalized form of the Stiles-Holladay-approximation is fitted to the PSF resulting in a stray light parameter Log(IS). Additionaly the transmission loss of eye is computed. For the proof of principle, a study on 13 healthy young volunteers was carried out. Scatter filters were positioned in front of the volunteer's eye during C-Quant and scatter measurements to generate straylight emulating scatter in the lens. The straylight parameter is compared to the C-Quant measurement parameter Log(ISC) and scatter density of the filters SDF with a partial correlation. Log(IS) shows significant correlation with the SDF and Log(ISC). The correlation is more prominent between Log(IS) combined with the transmission loss and the SDF and Log(ISC). Our novel measurement and reconstruction technique allow for objective stray light analysis of visual angles up to 4 degrees.

Sedentary lifestyle and its relation to cardiovascular risk factors, insulin resistance and inflammatory profile.

PubMed

León-Latre, Montserrat; Moreno-Franco, Belén; Andrés-Esteban, Eva M; Ledesma, Marta; Laclaustra, Martín; Alcalde, Víctor; Peñalvo, José L; Ordovás, José M; Casasnovas, José A

2014-06-01

To analyze the association between sitting time and biomarkers of insulin resistance and inflammation in a sample of healthy male workers. Cross-sectional study carried out in a sample of 929 volunteers belonging to the Aragon Workers' Health Study cohort. Sociodemographic, anthropometric, pharmacological and laboratory data were collected: lipids-total cholesterol, high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, triglycerides, apolipoproteins A-1 and B-100, lipoprotein (a)-, insulin resistance-glucose, glycated hemoglobin, homeostasis model assessment of insulin resistance, insulin, and triglyceride/high-density lipoprotein cholesterol ratio-, and inflammatory profile-C-reactive protein and leukocytes. Information on sitting time and physical activity was assessed using a questionnaire. Sedentary behavior was analyzed in terms of prevalences and medians, according to tertiles, using a multivariate model (crude and adjusted linear regression) with biomarkers of inflammation and insulin resistance. The most sedentary individuals had higher body mass index, greater waist circumference, and higher systolic blood pressure, with a significant upward trend in each tertile. Likewise, they had a worse lipid profile with a higher C-reactive protein level, homeostasis model assessment of insulin resistance index, triglyceride/high-density lipoprotein cholesterol ratio, and insulin concentration. In the multivariate analysis, we observed a significant association between the latter parameters and sitting time in hours (log C-reactive protein [β = 0.07], log homeostasis model assessment of insulin resistance index [β = 0.05], triglyceride/high-density lipoprotein cholesterol ratio [β = 0.23], and insulin [β = 0.44]), which remained after adjustment for metabolic equivalents-h/week. Workers who spend more time sitting show a worse inflammatory and insulin resistance profile independently of the physical activity performed. Copyright © 2013 Sociedad Española de Cardiología. Published by Elsevier Espana. All rights reserved.

The VMC Survey. XXVII. Young Stellar Structures in the LMC’s Bar Star-forming Complex

NASA Astrophysics Data System (ADS)

Sun, Ning-Chen; de Grijs, Richard; Subramanian, Smitha; Bekki, Kenji; Bell, Cameron P. M.; Cioni, Maria-Rosa L.; Ivanov, Valentin D.; Marconi, Marcella; Oliveira, Joana M.; Piatti, Andrés E.; Ripepi, Vincenzo; Rubele, Stefano; Tatton, Ben L.; van Loon, Jacco Th.

2017-11-01

Star formation is a hierarchical process, forming young stellar structures of star clusters, associations, and complexes over a wide range of scales. The star-forming complex in the bar region of the Large Magellanic Cloud is investigated with upper main-sequence stars observed by the VISTA Survey of the Magellanic Clouds. The upper main-sequence stars exhibit highly nonuniform distributions. Young stellar structures inside the complex are identified from the stellar density map as density enhancements of different significance levels. We find that these structures are hierarchically organized such that larger, lower-density structures contain one or several smaller, higher-density ones. They follow power-law size and mass distributions, as well as a lognormal surface density distribution. All these results support a scenario of hierarchical star formation regulated by turbulence. The temporal evolution of young stellar structures is explored by using subsamples of upper main-sequence stars with different magnitude and age ranges. While the youngest subsample, with a median age of log(τ/yr) = 7.2, contains the most substructure, progressively older ones are less and less substructured. The oldest subsample, with a median age of log(τ/yr) = 8.0, is almost indistinguishable from a uniform distribution on spatial scales of 30-300 pc, suggesting that the young stellar structures are completely dispersed on a timescale of ˜100 Myr. These results are consistent with the characteristics of the 30 Doradus complex and the entire Large Magellanic Cloud, suggesting no significant environmental effects. We further point out that the fractal dimension may be method dependent for stellar samples with significant age spreads.

Postfragmentation density function for bacterial aggregates in laminar flow.

PubMed

Byrne, Erin; Dzul, Steve; Solomon, Michael; Younger, John; Bortz, David M

2011-04-01

The postfragmentation probability density of daughter flocs is one of the least well-understood aspects of modeling flocculation. We use three-dimensional positional data of Klebsiella pneumoniae bacterial flocs in suspension and the knowledge of hydrodynamic properties of a laminar flow field to construct a probability density function of floc volumes after a fragmentation event. We provide computational results which predict that the primary fragmentation mechanism for large flocs is erosion. The postfragmentation probability density function has a strong dependence on the size of the original floc and indicates that most fragmentation events result in clumps of one to three bacteria eroding from the original floc. We also provide numerical evidence that exhaustive fragmentation yields a limiting density inconsistent with the log-normal density predicted in the literature, most likely due to the heterogeneous nature of K. pneumoniae flocs. To support our conclusions, artificial flocs were generated and display similar postfragmentation density and exhaustive fragmentation. ©2011 American Physical Society

Forecasting and Hindcasting Waves In and Near the Marginal Ice Zone: Wave Modeling and the ONR Sea State Field Experiment

DTIC Science & Technology

2018-04-12

non-directional) wave spectra, but we consider the energy at high frequencies to be unreliable, so we only use significant waveheight Hs and dominant...spectral density, N=E/s), which is a function of wavenumber or frequency (k or s), direction (θ), space (x,y), and time (t), with spectral density...Elgar 1987). As the spectra are now co-located in time, space , and frequency , the inversion is simply a minimization process for |logVR(6jvH>w(9

Evolution of spherical over-densities in tachyon scalar field model

NASA Astrophysics Data System (ADS)

Setare, M. R.; Felegary, F.; Darabi, F.

2017-09-01

We study the tachyon scalar field model in flat FRW cosmology with the particular potential ϕ-2 and the scale factor behavior a (t) =tn. We consider the spherical collapse model and investigate the effects of the tachyon scalar field on the structure formation in flat FRW universe. We calculate δc (zc), λ (zc), ξ (zc), ΔV (zc), log ⁡ [ νf (ν) ] and log ⁡ [ n (k) ] for the tachyon scalar field model and compare the results with the results of EdS model and ΛCDM model. It is shown that in the tachyon scalar field model the structure formation may occur earlier, in comparison to the other models.

Pretreatment Characteristics of Waste Oak Wood by Ammonia Percolation

NASA Astrophysics Data System (ADS)

Kim, Jun-Seok; Kim, Hyunjoon; Lee, Jin-Suk; Lee, Joon-Pyo; Park, Soon-Chul

A log of waste oak wood collected from a Korean mushroom farm has been tested for ammonia percolation pretreatment. The waste log has different physical characteristics from that of virgin oak wood. The density of the waste wood was 30% lower than that of virgin oak wood. However, there is little difference in the chemical compositions between the woods. Due to the difference in physical characteristics, the optimal pretreatment conditions were also quite different. While for waste oak the optimum temperature was determined to be 130°C, for virgin oak wood the optimum pretreatment was only achieved at 170°C. Presoaking for 12 h with ammonia solution before pretreatment was helpful to increase the delignification efficiency.

The effect of ISM absorption on stellar activity measurements and its relevance for exoplanet studies

NASA Astrophysics Data System (ADS)

Fossati, L.; Marcelja, S. E.; Staab, D.; Cubillos, P. E.; France, K.; Haswell, C. A.; Ingrassia, S.; Jenkins, J. S.; Koskinen, T.; Lanza, A. F.; Redfield, S.; Youngblood, A.; Pelzmann, G.

2017-05-01

Past ultraviolet and optical observations of stars hosting close-in Jupiter-mass planets have shown that some of these stars present an anomalously low chromospheric activity, significantly below the basal level. For the hot Jupiter planet host WASP-13, observations have shown that the apparent lack of activity is possibly caused by absorption from the intervening interstellar medium (ISM). Inspired by this result, we study the effect of ISM absorption on activity measurements (S and log R 'HK indices) for main-sequence late-type stars. To this end, we employ synthetic stellar photospheric spectra combined with varying amounts of chromospheric emission and ISM absorption. We present the effect of ISM absorption on activity measurements by varying several instrumental (spectral resolution), stellar (projected rotational velocity, effective temperature, and chromospheric emission flux), and ISM parameters (relative velocity between stellar and ISM Ca II lines, broadening b-parameter, and Ca II column density). We find that for relative velocities between the stellar and ISM lines smaller than 30-40 km s-1 and for ISM Ca II column densities log NCaII ⪆ 12, the ISM absorption has a significant influence on activity measurements. Direct measurements and three dimensional maps of the Galactic ISM absorption indicate that an ISM Ca II column density of log NCaII = 12 is typically reached by a distance of about 100 pc along most sight lines. In particular, for a Sun-like star lying at a distance greater than 100 pc, we expect a depression (bias) in the log R'HK value larger than 0.05-0.1 dex, about the same size as the typical measurement and calibration uncertainties on this parameter. This work shows that the bias introduced by ISM absorption must always be considered when measuring activity for stars lying beyond 100 pc. We also consider the effect of multiple ISM absorption components. We discuss the relevance of this result for exoplanet studies and revise the latest results on stellar activity versus planet surface gravity correlation. We finally describe methods with which it would be possible to account for ISM absorption in activity measurements and provide a code to roughly estimate the magnitude of the bias. Correcting for the ISM absorption bias may allow one to identify the origin of the anomaly in the activity measured for some planet-hosting stars.

Harvesting small trees for bio-energy

Treesearch

John Klepac; Robert Rummer; Jason Thompson

2011-01-01

A conventional whole-tree logging operation consisting of 4-wheeled and 3-wheeled saw-head feller-bunchers, two grapple skidders and a chipper that produces dirty chips was monitored across several stands and machine performance evaluated. Stands were inventoried to determine density, volume, and basal area per acre and will be used to relate machine performance to...

Ecological correlates of flying squirrel microhabitat use and density in temperate rainforests of southeastern Alaska

Treesearch

Winston P. Smith; Scott M. Gende; Jeffrey V. Nichols

2004-01-01

We studied habitat relations of the Prince of Wales flying squirrel (Glaucomys sabrinus griseifrons), an endemic of the temperate, coniferous rainforest of southeastern Alaska, because of concerns over population viability from extensive clear-cut logging in the region. We used stepwise logistic regression to examine relationships between...

Kraft pulp from budworm-infested jack pine

Treesearch

J. Y. Zhu; Gary C. Myers

2006-01-01

This study evaluated the quality of kraft pulp from bud-worm-infested jack pine. The logs were classified as merchantable live, suspect, or merchantable dead. Raw materials were evaluated through visual inspection, analysis of the chemical composition, SilviScan measurement of the density, and measurement of the tracheid length. Unbleached pulps were then refined using...

Crown Release Increases Diameter Growth and Bole Sprouting of Pole-Size Yellow Birch

Treesearch

Gayne G. Erdmann; Ralph M. Jr. Peterson

1971-01-01

During the second and third years after release, dominant, codominant, and intermediate pole-size yellow birch grew nearly twice as fast in diameter as unreleased poles. Growth rates were also related to foliage density. Epicormic sprouting was increased by crown release but most sprouting occured in the second log.

Empirical models for fitting of oral concentration time curves with and without an intravenous reference.

PubMed

Weiss, Michael

2017-06-01

Appropriate model selection is important in fitting oral concentration-time data due to the complex character of the absorption process. When IV reference data are available, the problem is the selection of an empirical input function (absorption model). In the present examples a weighted sum of inverse Gaussian density functions (IG) was found most useful. It is shown that alternative models (gamma and Weibull density) are only valid if the input function is log-concave. Furthermore, it is demonstrated for the first time that the sum of IGs model can be also applied to fit oral data directly (without IV data). In the present examples, a weighted sum of two or three IGs was sufficient. From the parameters of this function, the model-independent measures AUC and mean residence time can be calculated. It turned out that a good fit of the data in the terminal phase is essential to avoid parameter biased estimates. The time course of fractional elimination rate and the concept of log-concavity have proved as useful tools in model selection.

Growth responses of mature loblolly pine to dead wood.manipulations.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ulyshen, Michael D.; Horn, Scott; Hanula, James L.

Large-scale manipulations of dead wood in mature Pinus taeda L. stands in the southeastern United States included a major one-time input of logs (fivefold increase in log volume) created by felling trees onsite, annual removals of all dead wood above >10 cm in diameter and >60 cm in length, and a reference in which no manipulations took place. We returned over a decade later to determine how these treatments affected tree growth using increment cores. There were no significant differences in tree density, basal area or tree diameters among treatments at the time of sampling. Although tree growth was consistentlymore » higher in the log-input plots and lower in the removal plots, this was true even during the 5 year period before the experiment began. When growth data from this initial period were included in the model as a covariate, no differences in post-treatment tree growth were detected. It is possible that treatment effects will become apparent after more time has passed, however.« less

Slurry-phase biodegradation of weathered oily sludge waste.

PubMed

Machín-Ramírez, C; Okoh, A I; Morales, D; Mayolo-Deloisa, K; Quintero, R; Trejo-Hernández, M R

2008-01-01

We assessed the biodegradation of a typical oily sludge waste (PB401) in Mexico using several regimes of indigenous microbial consortium and relevant bioremediation strategies in slurry-phase system. Abiotic loss of total petroleum hydrocarbons (TPH) in the PB401 was insignificant, and degradation rates under the various treatment conditions ranged between 666.9 and 2168.7 mg kg(-1) day(-1) over a 15 days reaction period, while viable cell count peaked at between log(10)5.7 and log(10)7.4 cfu g(-1). Biostimulation with a commercial fertilizer resulted in 24% biodegradation of the TPH in the oily waste and a corresponding peak cell density of log(10)7.4 cfu g(-1). Addition of non-indigenous adapted consortium did not appear to enhance the removal of TPH from the oily waste. It would appear that the complexities of the components of the alkylaromatic fraction of the waste limited biodegradation rate even in a slurry system.

Geophysical examination of coal deposits

NASA Astrophysics Data System (ADS)

Jackson, L. J.

1981-04-01

Geophysical techniques for the solution of mining problems and as an aid to mine planning are reviewed. Techniques of geophysical borehole logging are discussed. The responses of the coal seams to logging tools are easily recognized on the logging records. Cores for laboratory analysis are cut from selected sections of the borehole. In addition, information about the density and chemical composition of the coal may be obtained. Surface seismic reflection surveys using two dimensional arrays of seismic sources and detectors detect faults with throws as small as 3 m depths of 800 m. In geologically disturbed areas, good results have been obtained from three dimensional surveys. Smaller faults as far as 500 m in advance of the working face may be detected using in seam seismic surveying conducted from a roadway or working face. Small disturbances are detected by pulse radar and continuous wave electromagnetic methods either from within boreholes or from underground. Other geophysical techniques which explicit the electrical, magnetic, gravitational, and geothermal properties of rocks are described.

Large-scale depositional characteristics of the Ulleung Basin and its impact on electrical resistivity and Archie-parameters for gas hydrate saturation estimates

USGS Publications Warehouse

Riedel, Michael; Collett, Timothy S.; Kim, H.-S.; Bahk, J.-J.; Kim, J.-H.; Ryu, B.-J.; Kim, G.-Y.

2013-01-01

Gas hydrate saturation estimates were obtained from an Archie-analysis of the Logging-While-Drilling (LWD) electrical resistivity logs under consideration of the regional geological framework of sediment deposition in the Ulleung Basin, East Sea, of Korea. Porosity was determined from the LWD bulk density log and core-derived values of grain density. In situ measurements of pore-fluid salinity as well as formation temperature define a background trend for pore-fluid resistivity at each drill site. The LWD data were used to define sets of empirical Archie-constants for different depth-intervals of the logged borehole at all sites drilled during the second Ulleung Basin Gas Hydrate Drilling Expedition (UBGH2). A clustering of data with distinctly different trend-lines is evident in the cross-plot of porosity and formation factor for all sites drilled during UBGH2. The reason for the clustering is related to the difference between hemipelagic sediments (mostly covering the top ∼100 mbsf) and mass-transport deposits (MTD) and/or the occurrence of biogenic opal. For sites located in the north-eastern portion of the Ulleung Basin a set of individual Archie-parameters for a shallow depth interval (hemipelagic) and a deeper MTD zone was achieved. The deeper zone shows typically higher resistivities for the same range of porosities seen in the upper zone, reflecting a shift in sediment properties. The presence of large amounts of biogenic opal (up to and often over 50% as defined by XRD data) was especially observed at Sites UBGH2-2_1 and UBGH2-2_2 (as well as UBGH1-9 from a previous drilling expedition in 2007). The boundary between these two zones can also easily be identified in gamma-ray logs, which also show unusually low readings in the opal-rich interval. Only by incorporating different Archie-parameters for the different zones a reasonable estimate of gas hydrate saturation was achieved that also matches results from other techniques such as pore-fluid freshening, velocity-based calculations, and pressure-core degassing experiments. Seismically, individual boundaries between zones were determined using a grid of regional 2D seismic data. Zoning from the Archie-analysis for sites in the south-western portion of the Ulleung Basin was also observed, but at these sites it is linked to individually stacked MTDs only and does not reflect a mineralogical occurrence of biogenic opal or hemipelagic sedimentation. The individual MTD events represent differently compacted material often associated with a strong decrease in porosity (and increase in density), warranting a separate set of empirical Archie-parameters.

Influence of Anthropogenic Disturbances on Stand Structural Complexity in Andean Temperate Forests: Implications for Managing Key Habitat for Biodiversity.

PubMed

Caviedes, Julián; Ibarra, José Tomás

2017-01-01

Forest attributes and their abundances define the stand structural complexity available as habitat for faunal biodiversity; however, intensive anthropogenic disturbances have the potential to degrade and simplify forest stands. In this paper we develop an index of stand structural complexity and show how anthropogenic disturbances, namely fire, logging, livestock, and their combined presence, affect stand structural complexity in a southern Global Biodiversity Hotspot. From 2011 to 2013, we measured forest structural attributes as well as the presence of anthropogenic disturbances in 505 plots in the Andean zone of the La Araucanía Region, Chile. In each plot, understory density, coarse woody debris, number of snags, tree diameter at breast height, and litter depth were measured, along with signs of the presence of anthropogenic disturbances. Ninety-five percent of the plots showed signs of anthropogenic disturbance (N = 475), with the combined presence of fire, logging, and livestock being the most common disturbance (N = 222; 44% of plots). The lowest values for the index were measured in plots combining fire, logging, and livestock. Undisturbed plots and plots with the presence of relatively old fires (> 70 years) showed the highest values for the index of stand structural complexity. Our results suggest that secondary forests < 70-year post-fire event, with the presence of habitat legacies (e.g. snags and CWD), can reach a structural complexity as high as undisturbed plots. Temperate forests should be managed to retain structural attributes, including understory density (7.2 ± 2.5 # contacts), volume of CWD (22.4 ± 25.8 m3/ha), snag density (94.4 ± 71.0 stems/ha), stand basal area (61.2 ± 31.4 m2/ha), and litter depth (7.5 ± 2.7 cm). Achieving these values will increase forest structural complexity, likely benefiting a range of faunal species in South American temperate forests.

Influence of Anthropogenic Disturbances on Stand Structural Complexity in Andean Temperate Forests: Implications for Managing Key Habitat for Biodiversity

PubMed Central

2017-01-01

Forest attributes and their abundances define the stand structural complexity available as habitat for faunal biodiversity; however, intensive anthropogenic disturbances have the potential to degrade and simplify forest stands. In this paper we develop an index of stand structural complexity and show how anthropogenic disturbances, namely fire, logging, livestock, and their combined presence, affect stand structural complexity in a southern Global Biodiversity Hotspot. From 2011 to 2013, we measured forest structural attributes as well as the presence of anthropogenic disturbances in 505 plots in the Andean zone of the La Araucanía Region, Chile. In each plot, understory density, coarse woody debris, number of snags, tree diameter at breast height, and litter depth were measured, along with signs of the presence of anthropogenic disturbances. Ninety-five percent of the plots showed signs of anthropogenic disturbance (N = 475), with the combined presence of fire, logging, and livestock being the most common disturbance (N = 222; 44% of plots). The lowest values for the index were measured in plots combining fire, logging, and livestock. Undisturbed plots and plots with the presence of relatively old fires (> 70 years) showed the highest values for the index of stand structural complexity. Our results suggest that secondary forests < 70-year post-fire event, with the presence of habitat legacies (e.g. snags and CWD), can reach a structural complexity as high as undisturbed plots. Temperate forests should be managed to retain structural attributes, including understory density (7.2 ± 2.5 # contacts), volume of CWD (22.4 ± 25.8 m3/ha), snag density (94.4 ± 71.0 stems/ha), stand basal area (61.2 ± 31.4 m2/ha), and litter depth (7.5 ± 2.7 cm). Achieving these values will increase forest structural complexity, likely benefiting a range of faunal species in South American temperate forests. PMID:28068349

Global LINE-1 DNA methylation is associated with blood glycaemic and lipid profiles

PubMed Central

Pearce, Mark S; McConnell, James C; Potter, Catherine; Barrett, Laura M; Parker, Louise; Mathers, John C; Relton, Caroline L

2012-01-01

Background Patterns of DNA methylation change with age and these changes are believed to be associated with the development of common complex diseases. The hypothesis that Long Interspersed Nucleotide Element 1 (LINE-1) DNA methylation (an index of global DNA methylation) is associated with biomarkers of metabolic health was investigated in this study. Methods Global LINE-1 DNA methylation was quantified by pyrosequencing in blood-derived DNA samples from 228 individuals, aged 49–51 years, from the Newcastle Thousand Families Study (NTFS). Associations between log-transformed LINE-1 DNA methylation levels and anthropometric and blood biochemical measurements, including triglycerides, total cholesterol, low-density lipoprotein (LDL) and high-density lipoprotein (HDL) cholesterol, fasting glucose and insulin secretion and resistance were examined. Results Linear regression, after adjustment for sex, demonstrated positive associations between log-transformed LINE-1 DNA methylation and fasting glucose {coefficient 2.80 [95% confidence interval (CI) 0.39–5.22]}, total cholesterol [4.76 (95% CI 1.43–8.10)], triglycerides [3.83 (95% CI 1.30–6.37)] and LDL-cholesterol [5.38 (95% CI 2.12–8.64)] concentrations. A negative association was observed between log-transformed LINE-1 methylation and both HDL cholesterol concentration [−1.43 (95% CI −2.38 to −0.48)] and HDL:LDL ratio [−1.06 (95% CI −1.76 to −0.36)]. These coefficients reflect the millimoles per litre change in biochemical measurements per unit increase in log-transformed LINE-1 methylation. Conclusions These novel associations between global LINE-1 DNA methylation and blood glycaemic and lipid profiles highlight a potential role for epigenetic biomarkers as predictors of metabolic disease and may be relevant to future diagnosis, prevention and treatment of this group of disorders. Further work is required to establish the role of confounding and reverse causation in the observed associations. PMID:22422454

Evaluation of Porosity and Permeability for an Oil Prospect, Offshore Vietnam by using Artificial Neural Networks

NASA Astrophysics Data System (ADS)

Bui, H. T.; Ho, L. T.; Ushijima, K.; Nur, A.

2006-12-01

Determination of porosity and permeability plays a key role either in characterization of a reservoir or in development of an oil field. Their distribution helps to predict the major faults or fractured zones that are related to high porosity area in order to reduce drilling hazards. Porosity and permeability of the rock can be determined directly from the core sample or obtained from well log data such as: sonic, density, neutron or resistivity. These input parameters depend not only on porosity (?) but also on the rock matrix, fluids contained in the rocks, clay mineral component, or geometry of pore structures. Therefore, it is not easy to estimate exactly porosity and permeability since having corrected those values by conventional well log interpretation method. In this study, the Artificial Neural Networks (ANNs) have been used to derive porosity and permeability directly from well log data for Vung Dong oil prospect, southern offshore Vietnam. Firstly, we designed a training patterns for ANNs from neutron porosity, bulk density, P-sonic, deep resistivity, shallow resistivity and MSFL log curves. Then, ANNs were trained by core samples data for porosity and permeability. Several ANNs paradigms have been tried on a basis of trial and error. The batch back- propagation algorithm was found more proficient in training porosity network meanwhile the quick propagation algorithm is more effective in the permeability network. Secondly, trained ANNs was tested and applied for real data set of some wells to calculate and reveal the distribution maps of porosity or permeability. Distributions of porosity and permeability have been correlated with seismic data interpretation to map the faults and fractured zones in the study. The ANNs showed good results of porosity and permeability distribution with high reliability, fast, accurate and low cost features. Therefore, the ANNs should be widely applied in oil and gas industry.

Multiple browsers structure tree recruitment in logged temperate forests

USGS Publications Warehouse

Faison, Edward K.; DeStefano, Stephen; Foster, David R.; Rapp, Joshua M.; Compton, Justin A.

2016-01-01

Historical extirpations have resulted in depauperate large herbivore assemblages in many northern forests. In eastern North America, most forests are inhabited by a single wild ungulate species, white-tailed deer (Odocoileus virginianus), and relationships between deer densities and impacts on forest regeneration are correspondingly well documented. Recent recolonizations by moose (Alces americanus) in northeastern regions complicate established deer density thresholds and predictions of browsing impacts on forest dynamics because size and foraging differences between the two animals suggest a lack of functional redundancy. We asked to what extent low densities of deer + moose would structure forest communities differently from that of low densities of deer in recently logged patch cuts of Massachusetts, USA. In each site, a randomized block with three treatment levels of large herbivores–no-ungulates (full exclosure), deer (partial exclosure), and deer + moose (control) was established. After 6–7 years, deer + moose reduced stem densities and basal area by 2-3-fold, Prunus pensylvanica and Quercus spp. recruitment by 3–6 fold, and species richness by 1.7 species (19%). In contrast, in the partial exclosures, deer had non-significant effects on stem density, basal area, and species composition, but significantly reduced species richness by 2.5 species on average (28%). Deer browsing in the partial exclosure was more selective than deer + moose browsing together, perhaps contributing to the decline in species richness in the former treatment and the lack of additional decline in the latter. Moose used the control plots at roughly the same frequency as deer (as determined by remote camera traps), suggesting that the much larger moose was the dominant browser species in terms of animal biomass in these cuts. A lack of functional redundancy with respect to foraging behavior between sympatric large herbivores may explain combined browsing effects that were both large and complex.

Pneumococcal colonisation density: a new marker for disease severity in HIV-infected adults with pneumonia

PubMed Central

Albrich, Werner C; Madhi, Shabir A; Adrian, Peter V; van Niekerk, Nadia; Telles, Jean-Noel; Ebrahim, N; Messaoudi, Melina; Paranhos-Baccalà, Glaucia; Giersdorf, Sven; Vernet, Guy; Mueller, Beat; Klugman, Keith P

2014-01-01

Objective A high genomic load of Pneumococcus from blood or cerebrospinal fluid has been associated with increased mortality. We aimed to analyse whether nasopharyngeal colonisation density in HIV-infected patients with community-acquired pneumonia (CAP) is associated with markers of disease severity or poor outcome. Methods Quantitative lytA real-time PCR was performed on nasopharyngeal swabs in HIV-infected South African adults hospitalised for acute CAP at Chris Hani Baragwanath Hospital, Soweto, South Africa. Pneumonia aetiology was considered pneumococcal if any sputum culture or Gram stain, urinary pneumococcal C-polysaccharide-based antigen, blood culture or whole blood lytA real-time PCR revealed pneumococci. Results There was a moderate correlation between the mean nasopharyngeal colonisation densities and increasing CURB65 scores among all-cause patients with pneumonia (Spearman correlation coefficient r=0.15, p=0.06) or with the Pitt bacteraemia score among patients with pneumococcal bacteraemia (p=0.63). In patients with pneumococcal pneumonia, nasopharyngeal pneumococcal colonisation density was higher among non-survivors than survivors (7.7 vs 6.1 log10 copies/mL, respectively, p=0.02) and among those who had pneumococci identified from blood cultures and/or by whole blood lytA real-time PCR than those with non-bacteraemic pneumococcal pneumonia (6.6 vs 5.6 log10 copies/mL, p=0.03). Nasopharyngeal colonisation density correlated positively with the biomarkers procalcitonin (Spearman correlation coefficient r=0.37, p<0.0001), proadrenomedullin (r=0.39, p=0.008) and copeptin (r=0.30, p=0.01). Conclusions In addition to its previously reported role as a diagnostic tool for pneumococcal pneumonia, quantitative nasopharyngeal colonisation density also correlates with mortality and prognostic biomarkers. It may also be useful as a severity marker for pneumococcal pneumonia in HIV-infected adults. PMID:25113557

Nano-TiO2-based photocatalytic disinfection of environmental surfaces contaminated by meticillin-resistant Staphylococcus aureus.

PubMed

Petti, S; Messano, G A

2016-05-01

Traditional cleaning and disinfection methods are inefficient for complete decontamination of hospital surfaces from meticillin-resistant Staphylococcus aureus (MRSA). Additional methods, such as nano-TiO2-based photocatalytic disinfection (PCD), could be helpful. To evaluate anti-MRSA activity of PCD on polyvinyl chloride (PVC) surfaces in natural-like conditions. Two identical PVC surfaces were used, and nano-TiO2 was incorporated into one of them. The surfaces were contaminated with MRSA isolated from hospitalized patients using a mist sprayer to simulate the mode of environmental contamination caused by a carrier. MRSA cell density was assessed before contamination until 180min after contamination using Rodac plates. The differences between test and control surfaces in terms of MRSA density and log MRSA density reduction were assessed using parametric and non-parametric statistical tests. Five strains were tested, and each strain was tested five times. The highest median MRSA densities [46.3 and 43.1 colony-forming units (cfu)/cm(2) for control and test surfaces, respectively] were detected 45min after contamination. Median MRSA densities 180min after contamination were 10.1 and 0.7cfu/cm(2) for control and test surfaces, respectively (P<0.01). Log MRSA density reduction attributable to PCD was 1.16logcfu/cm(2), corresponding to 93% reduction of the baseline MRSA contamination. The disinfectant activity remained stable throughout the 25 testing occasions, despite between-test cleaning and disinfection. The anti-MRSA activity of PCD was compatible with the benchmark for surface hygiene in hospitals (<1cfu/cm(2)), but required 3h of exposure to photocatalysis. Thus, PCD could be considered for non-clinical surfaces. However, for clinical surfaces, PCD should be regarded as supplemental to conventional decontamination procedures, rather than an alternative. Copyright © 2016 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.

Gene Methylation and Cytological Atypia in Random Fine Needle Aspirates for Assessment of Breast Cancer Risk

PubMed Central

Hafeez, Sidra; Bujanda, Zoila Lopez; Chatterton, Robert T.; Jacobs, Lisa K.; Khouri, Nagi F.; Ivancic, David; Kenney, Kara; Shehata, Christina; Jeter, Stacie C.; Wolfman, Judith A.; Zalles, Carola M.; Huang, Peng

2016-01-01

Methods to determine individualized breast cancer risk lack sufficient sensitivity to select women most likely to benefit from preventive strategies. Alterations in DNA methylation occur early in breast cancer. We hypothesized that cancer-specific methylation markers could enhance breast cancer risk assessment. We evaluated 380 women without a history of breast cancer. We determined their menopausal status or menstrual cycle phase, risk of developing breast cancer (Gail model), and breast density, and obtained random fine needle aspiration (rFNA) samples for assessment of cytopathology and cumulative methylation index (CMI). Eight methylated gene markers were identified through whole genome methylation analysis and included novel and previously established breast cancer detection genes. We performed correlative and multivariate linear regression analyses to evaluate DNA methylation of a gene panel as a function of clinical factors associated with breast cancer risk. CMI and individual gene methylation were independent of age, menopausal status or menstrual phase, lifetime Gail risk score, and breast density. CMI and individual gene methylation for the eight genes increased significantly (p<0.001) with increasing cytological atypia. The findings were verified with multivariate analyses correcting for age, log (Gail), log (percent density), rFNA cell number and BMI. Our results demonstrate a significant association between cytological atypia and high CMI, which does not vary with menstrual phase or menopause and is independent of Gail risk and mammographic density. Thus CMI is an excellent candidate breast cancer risk biomarker, warranting larger prospective studies to establish its utility for cancer risk assessment. PMID:27261491

Modeling decay rates of dead wood in a neotropical forest.

PubMed

Hérault, Bruno; Beauchêne, Jacques; Muller, Félix; Wagner, Fabien; Baraloto, Christopher; Blanc, Lilian; Martin, Jean-Michel

2010-09-01

Variation of dead wood decay rates among tropical trees remains one source of uncertainty in global models of the carbon cycle. Taking advantage of a broad forest plot network surveyed for tree mortality over a 23-year period, we measured the remaining fraction of boles from 367 dead trees from 26 neotropical species widely varying in wood density (0.23-1.24 g cm(-3)) and tree circumference at death time (31.5-272.0 cm). We modeled decay rates within a Bayesian framework assuming a first order differential equation to model the decomposition process and tested for the effects of forest management (selective logging vs. unexploited), of mode of death (standing vs. downed) and of topographical levels (bottomlands vs. hillsides vs. hilltops) on wood decay rates. The general decay model predicts the observed remaining fraction of dead wood (R2 = 60%) with only two biological predictors: tree circumference at death time and wood specific density. Neither selective logging nor local topography had a differential effect on wood decay rates. Including the mode of death into the model revealed that standing dead trees decomposed faster than downed dead trees, but the gain of model accuracy remains rather marginal. Overall, these results suggest that the release of carbon from tropical dead trees to the atmosphere can be simply estimated using tree circumference at death time and wood density.

Physical conditions in the neutral interstellar medium at z = 2.43 toward Q 2348-011

NASA Astrophysics Data System (ADS)

Noterdaeme, P.; Petitjean, P.; Srianand, R.; Ledoux, C.; Le Petit, F.

2007-07-01

Aims:We aim at deriving the physical conditions in the neutral gas associated with damped Lyman-α systems using observation and analysis of H2 and C i absorptions. Methods: We obtained a high-resolution VLT-UVES spectrum of the quasar Q 2348-011 over a wavelength range that covers most of the prominent metal and molecular absorption lines from the log N(H i) = 20.50 ± 0.10 damped Lyman-α system at z_abs=2.4263. We detected H2 in this system and measured column densities of H2, C i, C i^*, C i**, Si ii, P ii, S ii, Fe ii, and Ni ii. From the column density ratios and, in particular, the relative populations of H2 rotational and C i fine-structure levels, we derived the physical conditions in the gas (relative abundances, dust-depletion, particle density, kinetic temperature, and ionising flux) and discuss physical conditions in the neutral phase. Results: Molecular hydrogen was detected in seven components in the first four rotational levels (J = 0-3) of the vibrational ground state. Absorption lines of H2 J=4 (resp. J = 5) rotational levels are detected in six (resp. two) of these components. This leads to a total molecular fraction of log f ≃ -1.69+0.37-0.58. Fourteen components are needed to reproduce the metal-line profiles. The overall metallicity is found to be -0.80, -0.62, -1.17 ± 0.10 for, respectively, [Si/H], [S/H] and [Fe/H]. We confirm the earlier findings that there is a correlation between log N(Fe ii)/N(S ii) and log N(Si ii)/N(S ii) from different components indicative of a dust-depletion pattern. Surprisingly, however, the depletion of metals onto dust in the H2 components is not large in this system: [Fe/S] = -0.8 to -0.1. The gas in H2-bearing components is found to be cold but still hotter than similar gas in our Galaxy (T > 130 K, instead of typically 80 K) and dense (n ˜ 100-200 cm-3). There is an anti-correlation (R=-0.97) between the logarithm of the photo-absorption rate, log β_0, and log N(H2)/N(C i) derived for each H2 component. We show that this is mostly due to shielding effects and imply that the photo-absorption rate β0 is a good indicator of the physical conditions in the gas. We find that the gas is immersed in an intense UV field, about one order of magnitude higher than in the solar vicinity. These results suggest that the gas in H2-bearing DLAs is clumpy, and star-formation occurs in the associated object. Based on observations carried out at the European Southern Observatory (ESO) under prog. ID No. 072.A-0346 with the UVES spectrograph installed at the Very Large Telescope (VLT) Unit 2, Kueyen, on Cerro Paranal, Chile.

Back in the saddle: large-deviation statistics of the cosmic log-density field

NASA Astrophysics Data System (ADS)

Uhlemann, C.; Codis, S.; Pichon, C.; Bernardeau, F.; Reimberg, P.

2016-08-01

We present a first principle approach to obtain analytical predictions for spherically averaged cosmic densities in the mildly non-linear regime that go well beyond what is usually achieved by standard perturbation theory. A large deviation principle allows us to compute the leading order cumulants of average densities in concentric cells. In this symmetry, the spherical collapse model leads to cumulant generating functions that are robust for finite variances and free of critical points when logarithmic density transformations are implemented. They yield in turn accurate density probability distribution functions (PDFs) from a straightforward saddle-point approximation valid for all density values. Based on this easy-to-implement modification, explicit analytic formulas for the evaluation of the one- and two-cell PDF are provided. The theoretical predictions obtained for the PDFs are accurate to a few per cent compared to the numerical integration, regardless of the density under consideration and in excellent agreement with N-body simulations for a wide range of densities. This formalism should prove valuable for accurately probing the quasi-linear scales of low-redshift surveys for arbitrary primordial power spectra.

Analysis of porosity distribution of large-scale porous media and their reconstruction by Langevin equation.

PubMed

Jafari, G Reza; Sahimi, Muhammad; Rasaei, M Reza; Tabar, M Reza Rahimi

2011-02-01

Several methods have been developed in the past for analyzing the porosity and other types of well logs for large-scale porous media, such as oil reservoirs, as well as their permeability distributions. We developed a method for analyzing the porosity logs ϕ(h) (where h is the depth) and similar data that are often nonstationary stochastic series. In this method one first generates a new stationary series based on the original data, and then analyzes the resulting series. It is shown that the series based on the successive increments of the log y(h)=ϕ(h+δh)-ϕ(h) is a stationary and Markov process, characterized by a Markov length scale h(M). The coefficients of the Kramers-Moyal expansion for the conditional probability density function (PDF) P(y,h|y(0),h(0)) are then computed. The resulting PDFs satisfy a Fokker-Planck (FP) equation, which is equivalent to a Langevin equation for y(h) that provides probabilistic predictions for the porosity logs. We also show that the Hurst exponent H of the self-affine distributions, which have been used in the past to describe the porosity logs, is directly linked to the drift and diffusion coefficients that we compute for the FP equation. Also computed are the level-crossing probabilities that provide insight into identifying the high or low values of the porosity beyond the depth interval in which the data have been measured. ©2011 American Physical Society

Density Determinations of the Coronae of Cool Stars Using a Newly Assigned Pair of Fe Xiv Lines in the Spectra of α Canis Minor, α Centauri, and the Sun [Density determinations of the coronae of cool stars using a newly assigned pair of Fe XIV lines in the spectra of alpha Canis Minor, alpha Centauri, and the Sun.

DOE PAGES

Beiersdorfer, P.; Hell, N.; Lepson, J. K.; ...

2015-12-02

We identified a previously unassigned pair of lines between 169 and 170 Å in the coronae of cool stars. Here, we attribute these lines to Fe xiv and show that their intensity ratio is sensitive to the electron density. Using observations taken with the Low Energy Transmission Grating Spectrometer of the Chandra X-ray Observatory we infer a density of log (n e/cm -3) = 10.2 ± 0.7 and 10.3 ± 0.8 from the newly identified line pair in the coronae of Procyon and α Cen A, respectively.

Host range of the emerald ash borer (Agrilus planipennis Fairmaire) (Coleoptera: Buprestidae) in North America: results of multiple-choice field experiments.

PubMed

Anulewicz, Andrea C; McCullough, Deborah G; Cappaert, David L; Poland, Therese M

2008-02-01

Emerald ash borer (Agrilus planipennis Fairmaire) (Coleoptera: Buprestidae), an invasive phloem-feeding pest, was identified as the cause of widespread ash (Fraxinus) mortality in southeast Michigan and Windsor, Ontario, Canada, in 2002. A. planipennis reportedly colonizes other genera in its native range in Asia, including Ulmus L., Juglans L., and Pterocarya Kunth. Attacks on nonash species have not been observed in North America to date, but there is concern that other genera could be colonized. From 2003 to 2005, we assessed adult A. planipennis landing rates, oviposition, and larval development on North American ash species and congeners of its reported hosts in Asia in multiple-choice field studies conducted at several southeast Michigan sites. Nonash species evaluated included American elm (U. americana L.), hackberry (Celtis occidentalis L.), black walnut (J. nigra L.), shagbark hickory [Carya ovata (Mill.) K.Koch], and Japanese tree lilac (Syringa reticulata Bl.). In studies with freshly cut logs, adult beetles occasionally landed on nonash logs but generally laid fewer eggs than on ash logs. Larvae fed and developed normally on ash logs, which were often heavily infested. No larvae were able to survive, grow, or develop on any nonash logs, although failed first-instar galleries occurred on some walnut logs. High densities of larvae developed on live green ash and white ash nursery trees, but there was no evidence of larval survival or development on Japanese tree lilac and black walnut trees in the same plantation. We felled, debarked, and intensively examined >28 m2 of phloem area on nine American elm trees growing in contact with or adjacent to heavily infested ash trees. We found no sign of A. planipennis feeding on any elm.

Diversity of Medicinal Plants among Different Forest-use Types of the Pakistani Himalaya.

PubMed

Adnan, Muhammad; Hölscher, Dirk

2012-12-01

Diversity of Medicinal Plants among Different Forest-use Types of the Pakistani Himalaya Medicinal plants collected in Himalayan forests play a vital role in the livelihoods of regional rural societies and are also increasingly recognized at the international level. However, these forests are being heavily transformed by logging. Here we ask how forest transformation influences the diversity and composition of medicinal plants in northwestern Pakistan, where we studied old-growth forests, forests degraded by logging, and regrowth forests. First, an approximate map indicating these forest types was established and then 15 study plots per forest type were randomly selected. We found a total of 59 medicinal plant species consisting of herbs and ferns, most of which occurred in the old-growth forest. Species number was lowest in forest degraded by logging and intermediate in regrowth forest. The most valuable economic species, including six Himalayan endemics, occurred almost exclusively in old-growth forest. Species composition and abundance of forest degraded by logging differed markedly from that of old-growth forest, while regrowth forest was more similar to old-growth forest. The density of medicinal plants positively correlated with tree canopy cover in old-growth forest and negatively in degraded forest, which indicates that species adapted to open conditions dominate in logged forest. Thus, old-growth forests are important as refuge for vulnerable endemics. Forest degraded by logging has the lowest diversity of relatively common medicinal plants. Forest regrowth may foster the reappearance of certain medicinal species valuable to local livelihoods and as such promote acceptance of forest expansion and medicinal plants conservation in the region. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s12231-012-9213-4) contains supplementary material, which is available to authorized users.

What's Gender Got to Do With It: Difference in the Proportion of Traditionally Female Cases Performed by General Urologists of Each Gender.

PubMed

Rotker, Katherine; Iosifescu, Sarah; Baird, Grayson; Thavaseelan, Simone; Hwang, Kathleen

2018-06-01

To examine surgical case volume characteristics in certifying urologists to evaluate practice patterns, given the long-standing understanding but unproven hypothesis that non-fellowship trained female general urologists perform more urogynecologic procedures compared with their equally trained male counterparts. Case log data from certifying and recertifying urologists from 2000 to 2015 were obtained from the American Board of Urology. Thirty-seven Current Procedural Terminology (CPT) codes were chosen to represent traditionally urogynecologic cases. Logistic regression analysis models were used to determine the percentage of total CPT codes logged during the certification period made up by traditionally urogynecologic cases. Male and female non-fellowship trained, self-described general urologists were compared. The case logs of 4032 non-fellowship trained general urologists were reviewed from 2000 to 2015, 297 of whom were female and 3735 of whom were male. Urogynecologic cases made up 1.27% of the total CPT codes logged by the women and 0.59% of those codes logged by the men (P <.001), an increase of 2.2 times (P <.001). This statistically significant difference persisted regardless of certification period, geographic location, population density, or full-time vs part-time employment. Traditional urogynecologic cases represented a significantly greater percentage of the total cases logged by non-fellowship trained female general urologists compared with their non-fellowship trained, generalist male colleagues. The percentage of total cases performed by both is very small. However, it supports a belief that patient populations differ for male and female general urologists, which may impact training or career choices. Copyright © 2018 Elsevier Inc. All rights reserved.

The ICDP Snake River Geothermal Drilling Project: preliminary overview of borehole geophysics

USGS Publications Warehouse

Schmitt, Douglas R.; Liberty, Lee M.; Kessler, James E.; Kuck, Jochem; Kofman, Randolph; Bishop, Ross; Shervais, John W.; Evans, James P.; Champion, Duane E.

2012-01-01

Hotspot: The Snake River Geothermal Drilling Project was undertaken to better understand the geothermal systems in three locations across the Snake River Plain with varying geological and hydrological structure. An extensive series of standard and specialized geophysical logs were obtained in each of the wells. Hydrogen-index neutron and γ-γ density logs employing active sources were deployed through the drill string, and although not fully calibrated for such a situation do provide semi-quantitative information related to the ‘stratigraphy’ of the basalt flows and on the existence of alteration minerals. Electrical resistivity logs highlight the existence of some fracture and mineralized zones. Magnetic susceptibility together with the vector magnetic field measurements display substantial variations that, in combination with laboratory measurements, may provide a tool for tracking magnetic field reversals along the borehole. Full waveform sonic logs highlight the variations in compressional and shear velocity along the borehole. These, together with the high resolution borehole seismic measurements display changes with depth that are not yet understood. The borehole seismic measurements indicate that seismic arrivals are obtained at depth in the formations and that strong seismic reflections are produced at lithological contacts seen in the corresponding core logging. Finally, oriented ultrasonic borehole televiewer images were obtained over most of the wells and these correlate well with the nearly 6 km of core obtained. This good image log to core correlations, particularly with regards to drilling induced breakouts and tensile borehole and core fractures will allow for confident estimates of stress directions and or placing constraints on stress magnitudes. Such correlations will be used to orient in core orientation giving information useful in hydrological assessments, paleomagnetic dating, and structural volcanology.

Fisher conservation in the Pacific States: field data meet genetics.

Treesearch

Jonathan Thompson

2005-01-01

Overtrapping of fishers in the early 1900s, combined with widespread habitat loss from clearcut logging, has resulted in the extirpation of this forest-dwelling carnivore throughout much of its former range in the Western United States. Poor dispersal abilities, low-density populations, and low reproductive rates all hinder the recovery of this little-known relative of...

Chapter 12: The variable-density thinning study at Stanislaus-Tuolumne Experimental Forest

Treesearch

E. Knapp; M. North; M. Benech; B. Estes

2012-01-01

Prior to historical logging and fire suppression, forests of the Sierra Nevada were extremely heterogeneous. Frequent low- to moderate-intensity fire was partly responsible for this heterogeneity, which in turn helped make forests resilient to high-severity stand-replacing events. Early observers of forests on the west slope of the Sierra Nevada noted the...

Habitat selection by the American marten in northeastern Oregon.

Treesearch

Evelyn L. Bull; Thad W. Heater; Jay F. Shepherd

2005-01-01

Habitat used by 20 adult radio-collared American martens was investigated in northeastern Oregon between 1993 and 1997 to provide land managers with information on habitat management for this species. Martens showed a strong preference for old structure, unlogged stands in subalpine fir and spruce forests with canopy closures 2508, a high density of dead trees and logs...

Decomposition of coarse woody debris originating by clearcutting of an old-growth conifer forest

Treesearch

Jack E. Janisch; Mark E. Harmon; Hua Chen; Becky Fasth; Jay Sexton

2005-01-01

Decomposition constants (k) for aboveground logs and stumps and subsurface coarse roots originating from harvested old-growth forest (estimated age 400 to 600 y) were assessed by volume-density change methods along a 70-y chronosequence of clearcuts on the Wind River Ranger District, Washington, USA. Principal species sampled were Tsuga heterophylla...

A meta-analysis of forest age and structure effects on northern flying squirrel densities

Treesearch

Gillian L. Holloway; Winston P. Smith

2011-01-01

Research on the impact of clearcut logging and partial harvesting practices on northern flying squirrels (Glaucomys sabrinus) has shown inconsistent and contrary results, limiting the use of this species as a management indicator species. Much of this variability in study results is due to the labor intensive nature of studying flying squirrels,...

Novel fuelbed characteristics associated with mechanical mastication treatments in northern California and south-western Oregon, USA

Treesearch

Jeffrey M. Kane; J. Morgan Varner; Eric E. Knapp

2009-01-01

Mechanically masticated fuelbeds are distinct from natural or logging slash fuelbeds, with different particle size distributions, bulk density, and particle shapes, leading to challenges in predicting fire behavior and effects. Our study quantified some physical properties of fuel particles (e.g. squared quadratic mean diameter, proportion of non-cylindrical particles...

Lumber potential of 12-year-old Saligna eucalyptus trees in Hawaii

Treesearch

Roger G. Skolmen

1974-01-01

The sawtimber potential of 12-year-old Eucalyptus saligna Sm. trees grown in Maui, Hawaii, was studied by using simple field techniques. Lumber manufactured from the trees was predominantly of low grade, but had lower average density than wood from older trees, and therefore was more desirable. Logs end-split badly, and sawed with the usually...

Photodynamic Therapy for Acinetobacter baumannii Burn Infections in Mice

DTIC Science & Technology

2009-06-29

37°C, 100 rpm) to an optical density at 600 nm of 0.6 to 0.8, which corresponds to 108 cells/ml (mid-log phase). This suspension was then...camera to quantify any dark toxicity of the conjugate to the bacteria. The mice were then illuminated with 660 15 nm light delivered by a noncoherent

Channel simulation for direct detection optical communication systems

NASA Technical Reports Server (NTRS)

Tycz, M.; Fitzmaurice, M. W.

1974-01-01

A technique is described for simulating the random modulation imposed by atmospheric scintillation and transmitter pointing jitter on a direct detection optical communication system. The system is capable of providing signal fading statistics which obey log normal, beta, Rayleigh, Ricean or chi-squared density functions. Experimental tests of the performance of the Channel Simulator are presented.

Channel simulation for direct-detection optical communication systems

NASA Technical Reports Server (NTRS)

Tycz, M.; Fitzmaurice, M. W.

1974-01-01

A technique is described for simulating the random modulation imposed by atmospheric scintillation and transmitter pointing jitter on a direct-detection optical communication system. The system is capable of providing signal fading statistics which obey log-normal, beta, Rayleigh, Ricean, or chi-square density functions. Experimental tests of the performance of the channel simulator are presented.

Downhole measurements in the AND-1B borehole, ANDRILL McMurdo Ice Shelf Project, Antarctica

USGS Publications Warehouse

Morin, R.; Williams, T.; Henrys, S.; Crosby, T.; Hansaraj, D.

2007-01-01

A comprehensive set of downhole measurements was collected in the AND-1B drillhole as part of the on-ice scientific programme defined for the McMurdo Ice Shelf (MIS) Project. Geophysical logs were recorded over two operation phases and consisted of calliper, temperature, fluid conductivity, induction resistivity, magnetic susceptibility, natural gamma activity, acoustic televiewer, borehole deviation, and dipmeter. In addition, two standard vertical seismic profiles (VSP) and one walk-away VSP were obtained. Radioactive logs (porosity and density) were not run because of unstable borehole conditions. Although the total depth of the hole is 1285 metres below seafloor (mbsf), the depth range for in situ measurements was limited by the length of the wireline (1018 mbsf) and by the nullification of some geophysical logs due to the presence of steel casing. A depth correction was derived to account for systematic discrepancies in depth between downhole measurements and cores; consequently, log responses can be directly compared to core properties. The resulting data are amenable to studies of cyclicity and climate, heat flux and fluid flow, and stricture and stress. When integrated with physical properties and fractures measured on the core, this information should play a significant role in addressing many of the scientific objectives of the ANDRILL programme.

The Umov effect in application to an optically thin two-component cloud of cosmic dust

NASA Astrophysics Data System (ADS)

Zubko, Evgenij; Videen, Gorden; Zubko, Nataliya; Shkuratov, Yuriy

2018-04-01

The Umov effect is an inverse correlation between linear polarization of the sunlight scattered by an object and its geometric albedo. The Umov effect has been observed in particulate surfaces, such as planetary regoliths, and recently it also was found in single-scattering small dust particles. Using numerical modeling, we study the Umov effect in a two-component mixture of small irregularly shaped particles. Such a complex chemical composition is suggested in cometary comae and other types of optically thin clouds of cosmic dust. We find that the two-component mixtures of small particles also reveal the Umov effect regardless of the chemical composition of their end-member components. The interrelation between log(Pmax) and log(A) in a two-component mixture of small irregularly shaped particles appears either in a straight linear form or in a slightly curved form. This curvature tends to decrease while the index n in a power-law size distribution r-n grows; at n > 2.5, the log(Pmax)-log(A) diagrams are almost straight linear in appearance. The curvature also noticeably decreases with the packing density of constituent material in irregularly shaped particles forming the mixture. That such a relation exists suggest the Umov effect may also be observed in more complex mixtures.

The Umov effect in application to an optically thin two-component cloud of cosmic dust

NASA Astrophysics Data System (ADS)

Zubko, Evgenij; Videen, Gorden; Zubko, Nataliya; Shkuratov, Yuriy

2018-07-01

The Umov effect is an inverse correlation between linear polarization of the sunlight scattered by an object and its geometric albedo. The Umov effect has been observed in particulate surfaces, such as planetary regoliths, and recently it also was found in single-scattering small dust particles. Using numerical modelling, we study the Umov effect in a two-component mixture of small irregularly shaped particles. Such a complex chemical composition is suggested in cometary comae and other types of optically thin clouds of cosmic dust. We find that the two-component mixtures of small particles also reveal the Umov effect regardless of the chemical composition of their end-member components. The interrelation between log(Pmax) and log(A) in a two-component mixture of small irregularly shaped particles appears either in a straight linear form or in a slightly curved form. This curvature tends to decrease while the index n in a power-law size distribution r-n grows; at n > 2.5, the log(Pmax)-log(A) diagrams are almost straight linear in appearance. The curvature also noticeably decreases with the packing density of constituent material in irregularly shaped particles forming the mixture. That such a relation exists suggests the Umov effect may also be observed in more complex mixtures.

Inactivation of avirulent Yersinia pestis on food and food contact surfaces by ultraviolet light and freezing.

PubMed

Sommers, Christopher H; Sheen, Shiowshuh

2015-09-01

Yersinia pestis, the causative agent of plague, can occasionally be contracted as a naso-pharyngeal or gastrointestinal illness through consumption of contaminated meat. In this study, the use of 254 nm ultraviolet light (UV-C) to inactivate a multi-isolate cocktail of avirulent Y. pestis on food and food contact surfaces was investigated. When a commercial UV-C conveyor was used (5 mW/cm(2)/s) 0.5 J/cm(2) inactivated >7 log of the Y. pestis cocktail on agar plates. At 0.5 J/cm(2), UV-C inactivated ca. 4 log of Y. pestis in beef, chicken, and catfish, exudates inoculated onto high density polypropylene or polyethylene, and stainless steel coupons, and >6 log was eliminated at 1 J/cm(2). Approximately 1 log was inactivated on chicken breast, beef steak, and catfish fillet surfaces at a UV-C dose of 1 J/cm(2). UV-C treatment prior to freezing of the foods did not increase the inactivation of Y. pestis over freezing alone. These results indicate that routine use of UV-C during food processing would provide workers and consumers some protection against Y. pestis. Published by Elsevier Ltd.

Estimating organic maturity from well logs, Upper Cretaceous Austin Chalk, Texas Gulf coast

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hines, G.A.; Berg, R.R.

1990-09-01

The Austin Chalk is both a source rock for oil and a fractured reservoir, and the evaluation of its organic maturity from well logs could be an aid to exploration and production. Geochemical measurements have shown three zones of organic maturity for source materials: (1) an immature zone to depths of 6,000 ft, (2) a peak-generation and accumulation zone from 6,000 to 6,500 ft, and (3) a mature, expulsion and migration zone below 6,500 ft. The response of common well logs identifies these zones. True resistivity (R{sub t}) is low in the immature zone, increases to a maximum in themore » peak-generation zone, and decreases to intermediate values in the expulsion zone. Density and neutron porosities are different in the immature zone but are nearly equal in the peak generation and expulsion zones. Correlations with conventional core analyses indicate that R{sub t} values between 9 and 40 ohm-m in the expulsion zone reflect a moveable oil saturation of 10 to 20% in the rock matrix. The moveable saturation provides oil from the matrix to fractures and is essential for sustained oil production. Therefore, the evaluation of moveable oil from well logs could be important in exploration.« less

A miniaturized fibrinolytic assay for plasminogen activators

NASA Technical Reports Server (NTRS)

Lewis, M. L.; Nachtwey, D. S.; Damron, K. L.

1991-01-01

This report describes a micro-clot lysis assay (MCLA) for evaluating fibrinolytic activity of plasminogen activators (PA). Fibrin clots were formed in wells of microtiter plates. Lysis of the clots by PA, indicated by change in turbidity (optical density, OD), was monitored with a microplate reader at five minutes intervals. Log-log plots of PA dilution versus endpoint, the time at which the OD value was halfway between the maximum and minimum value for each well, were linear over a broad range of PA concentrations (2-200 International units/ml). The MCLA is a modification and miniaturization of well established fibrinolytic methods. The significant practical advantages of the MCLA are that it is a simple, relatively sensitive, non-radioactive, quantitative, kinetic, fibrinolytic micro-technique which can be automated.

Determination of In-situ Rock Thermal Properties from Geophysical Log Data of SK-2 East Borehole, Continental Scientific Drilling Project of Songliao Basin, NE China

NASA Astrophysics Data System (ADS)

Zou, C.; Zhao, J.; Zhang, X.; Peng, C.; Zhang, S.

2017-12-01

Continental Scientific Drilling Project of Songliao Basin is a drilling project under the framework of ICDP. It aims at detecting Cretaceous environmental/climate changes and exploring potential resources near or beneath the base of the basin. The main hole, SK-2 East Borehole, has been drilled to penetrate through the Cretaceous formation. A variety of geophysical log data were collected from the borehole, which provide a great opportunity to analyze thermal properties of in-situ rock surrounding the borehole.The geothermal gradients were derived directly from temperature logs recorded 41 days after shut-in. The matrix and bulk thermal conductivity of rock were calculated with the geometric-mean model, in which mineral/rock contents and porosity were required as inputs (Fuchs et. al., 2014). Accurate mineral contents were available from the elemental capture spectroscopy logs and porosity data were derived from conventional logs (density, neutron and sonic). The heat production data were calculated by means of the concentrations of uranium, thorium and potassium determined from natural gamma-ray spectroscopy logs. Then, the heat flow was determined by using the values of geothermal gradients and thermal conductivity.The thermal parameters of in-situ rock over the depth interval of 0 4500m in the borehole were derived from geophysical logs. Statistically, the numerical ranges of thermal parameters are in good agreement with the measured values from both laboratory and field in this area. The results show that high geothermal gradient and heat flow exist over the whole Cretaceous formation, with anomalously high values in the Qingshankou formation (1372.0 1671.7m) and the Quantou formation (1671.7 2533.5m). It is meaningful for characterization of geothermal regime and exploration of geothermal resources in the basin. Acknowledgment: This work was supported by the "China Continental Scientific Drilling Program of Cretaceous Songliao Basin (CCSD-SK)" of China Geological Survey Projects (NO. 12120113017600).

Trade-offs between carbon stocks and timber recovery in tropical forests are mediated by logging intensity.

PubMed

Roopsind, Anand; Caughlin, T Trevor; van der Hout, Peter; Arets, Eric; Putz, Francis E

2018-07-01

Forest degradation accounts for ~70% of total carbon losses from tropical forests. Substantial emissions are from selective logging, a land-use activity that decreases forest carbon density. To maintain carbon values in selectively logged forests, climate change mitigation policies and government agencies promote the adoption of reduced-impact logging (RIL) practices. However, whether RIL will maintain both carbon and timber values in managed tropical forests over time remains uncertain. In this study, we quantify the recovery of timber stocks and aboveground carbon at an experimental site where forests were subjected to different intensities of RIL (4, 8, and 16 trees/ha). Our census data span 20 years postlogging and 17 years after the liberation of future crop trees from competition in a tropical forest on the Guiana Shield, a globally important forest carbon reservoir. We model recovery of timber and carbon with a breakpoint regression that allowed us to capture elevated tree mortality immediately after logging. Recovery rates of timber and carbon were governed by the presence of residual trees (i.e., trees that persisted through the first harvest). The liberation treatment stimulated faster recovery of timber albeit at a carbon cost. Model results suggest a threshold logging intensity beyond which forests managed for timber and carbon derive few benefits from RIL, with recruitment and residual growth not sufficient to offset losses. Inclusion of the breakpoint at which carbon and timber gains outpaced postlogging mortality led to high predictive accuracy, including out-of-sample R 2 values >90%, and enabled inference on demographic changes postlogging. Our modeling framework is broadly applicable to studies that aim to quantify impacts of logging on forest recovery. Overall, we demonstrate that initial mortality drives variation in recovery rates, that the second harvest depends on old growth wood, and that timber intensification lowers carbon stocks. © 2018 John Wiley & Sons Ltd.

Chemical analysis of water samples and geophysical logs from cored test holes drilled in the central Oklahoma Aquifer, Oklahoma

USGS Publications Warehouse

Schlottmann, Jamie L.; Funkhouser, Ron A.

1991-01-01

Chemical analyses of water from eight test holes and geophysical logs for nine test holes drilled in the Central Oklahoma aquifer are presented. The test holes were drilled to investigate local occurrences of potentially toxic, naturally occurring trace substances in ground water. These trace substances include arsenic, chromium, selenium, residual alpha-particle activities, and uranium. Eight of the nine test holes were drilled near wells known to contain large concentrations of one or more of the naturally occurring trace substances. One test hole was drilled in an area known to have only small concentrations of any of the naturally occurring trace substances.Water samples were collected from one to eight individual sandstone layers within each test hole. A total of 28 water samples, including four duplicate samples, were collected. The temperature, pH, specific conductance, alkalinity, and dissolved-oxygen concentrations were measured at the sample site. Laboratory determinations included major ions, nutrients, dissolved organic carbon, and trace elements (aluminum, arsenic, barium, beryllium, boron, cadmium, chromium, hexavalent chromium, cobalt, copper, iron, lead, lithium, manganese, mercury, molybdenum, nickel, selenium, silver, strontium, vanadium and zinc). Radionuclide activities and stable isotope (5 values also were determined, including: gross-alpha-particle activity, gross-beta-particle activity, radium-226, radium-228, radon-222, uranium-234, uranium-235, uranium-238, total uranium, carbon-13/carbon-12, deuterium/hydrogen-1, oxygen-18/oxygen-16, and sulfur-34/sulfur-32. Additional analyses of arsenic and selenium species are presented for selected samples as well as analyses of density and iodine for two samples, tritium for three samples, and carbon-14 for one sample.Geophysical logs for most test holes include caliper, neutron, gamma-gamma, natural-gamma logs, spontaneous potential, long- and short-normal resistivity, and single-point resistance. Logs for test-hole NOTS 7 do not include long- and short-normal resistivity, spontaneous-potential, or single-point resistivity. Logs for test-hole NOTS 7A include only caliper and natural-gamma logs.

Aberration of a negative ion beam caused by space charge effect.

PubMed

Miyamoto, K; Wada, S; Hatayama, A

2010-02-01

Aberrations are inevitable when the charged particle beams are extracted, accelerated, transmitted, and focused with electrostatic and magnetic fields. In this study, we investigate the aberration of a negative ion accelerator for a neutral beam injector theoretically, especially the spherical aberration caused by the negative ion beam expansion due to the space charge effect. The negative ion current density profiles with the spherical aberration are compared with those without the spherical aberration. It is found that the negative ion current density profiles in a log scale are tailed due to the spherical aberration.

Performance of Low-Density Parity-Check Coded Modulation

NASA Technical Reports Server (NTRS)

Hamkins, Jon

2010-01-01

This paper reports the simulated performance of each of the nine accumulate-repeat-4-jagged-accumulate (AR4JA) low-density parity-check (LDPC) codes [3] when used in conjunction with binary phase-shift-keying (BPSK), quadrature PSK (QPSK), 8-PSK, 16-ary amplitude PSK (16- APSK), and 32-APSK.We also report the performance under various mappings of bits to modulation symbols, 16-APSK and 32-APSK ring scalings, log-likelihood ratio (LLR) approximations, and decoder variations. One of the simple and well-performing LLR approximations can be expressed in a general equation that applies to all of the modulation types.

Properties of the probability density function of the non-central chi-squared distribution

NASA Astrophysics Data System (ADS)

András, Szilárd; Baricz, Árpád

2008-10-01

In this paper we consider the probability density function (pdf) of a non-central [chi]2 distribution with arbitrary number of degrees of freedom. For this function we prove that can be represented as a finite sum and we deduce a partial derivative formula. Moreover, we show that the pdf is log-concave when the degrees of freedom is greater or equal than 2. At the end of this paper we present some Turán-type inequalities for this function and an elegant application of the monotone form of l'Hospital's rule in probability theory is given.

A logNHI = 22.6 Damped Lyα Absorber in a Dark Gamma-Ray Burst: The Environment of GRB 050401

NASA Astrophysics Data System (ADS)

Watson, D.; Fynbo, J. P. U.; Ledoux, C.; Vreeswijk, P.; Hjorth, J.; Smette, A.; Andersen, A. C.; Aoki, K.; Augusteijn, T.; Beardmore, A. P.; Bersier, D.; Castro Cerón, J. M.; D'Avanzo, P.; Diaz-Fraile, D.; Gorosabel, J.; Hirst, P.; Jakobsson, P.; Jensen, B. L.; Kawai, N.; Kosugi, G.; Laursen, P.; Levan, A.; Masegosa, J.; Näränen, J.; Page, K. L.; Pedersen, K.; Pozanenko, A.; Reeves, J. N.; Rumyantsev, V.; Shahbaz, T.; Sharapov, D.; Sollerman, J.; Starling, R. L. C.; Tanvir, N.; Torstensson, K.; Wiersema, K.

2006-12-01

The optical afterglow spectrum of GRB 050401 (at z=2.8992+/-0.0004) shows the presence of a damped Lyα absorber (DLA), with logNHI=22.6+/-0.3. This is the highest column density ever observed in a DLA and is about 5 times larger than the strongest DLA detected so far in any QSO spectrum. From the optical spectrum, we also find a very large Zn column density, implying an abundance of [Zn/H]=-1.0+/-0.4. These large columns are supported by the early X-ray spectrum from Swift XRT, which shows a column density (in excess of Galactic) of logNH=22.21+0.06-0.08 assuming solar abundances (at z=2.9). The comparison of this X-ray column density, which is dominated by absorption due to α-chain elements, and the H I column density derived from the Lyα absorption line allows us to derive a metallicity for the absorbing matter of [α/H]=-0.4+/-0.3. The optical spectrum is reddened and can be well reproduced with a power law with SMC extinction, where AV=0.62+/-0.06. But the total optical extinction can also be constrained independent of the shape of the extinction curve: from the optical to X-ray spectral energy distribution, we find 0.5<~AV<~4.5. However, even this upper limit, independent of the shape of the extinction curve, is still well below the dust column that is inferred from the X-ray column density, i.e., AV=9.1+1.4-1.5. This discrepancy might be explained by a small dust content with high metallicity (low dust-to-metals ratio). ``Gray'' extinction cannot explain the discrepancy, since we are comparing the metallicity to a measurement of the total extinction (without reference to the reddening). Little dust with high metallicity may be produced by sublimation of dust grains or may naturally exist in systems younger than a few hundred megayears. Based in part on observations made at the European Southern Observatory, Paranal, Chile under program 075.D-0270, with the Nordic Optical Telescope, operated on the island of La Palma jointly by Denmark, Finland, Iceland, Norway, and Sweden, in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias, with the Wide Field Camera (WFCAM) on the United Kingdom Infrared Telescope, which is operated by the Joint Astronomy Centre on behalf of the UK Particle Physics and Astronomy Research Council, and on data collected at the Subaru Telescope, which is operated by the National Astronomical Observatory of Japan.

The diversity of beetle assemblages in different habitat types in Sabah, Malaysia.

PubMed

Chung, A Y; Eggleton, P; Speight, M R; Hammond, P M; Chey, V K

2000-12-01

The diversity of beetle assemblages in different habitat types (primary forest, logged forest, acacia plantation and oil palm plantation) in Sabah, Malaysia was investigated using three different methods based on habitat levels (Winkler sampling, flight-interception-trapping and mist-blowing). The overall diversity was extremely high, with 1711 species recorded from only 8028 individuals and 81 families (115 family and subfamily groups). Different degrees of environmental changes had varying effects on the beetle species richness and abundance, with oil palm plantation assemblage being most severely affected, followed by acacia plantation and then logged forest. A few species became numerically dominant in the oil palm plantation. In terms of beetle species composition, the acacia fauna showed much similarity with the logged forest fauna, and the oil palm fauna was very different from the rest. The effects of environmental variables (number of plant species, sapling and tree densities, amount of leaf litter, ground cover, canopy cover, soil pH and compaction) on the beetle assemblage were also investigated. Leaf litter correlated with species richness, abundance and composition of subterranean beetles. Plant species richness, tree and sapling densities correlated with species richness, abundance and composition of understorey beetles while ground cover correlated only with the species richness and abundance of these beetles. Canopy cover correlated only with arboreal beetles. In trophic structure, predators represented more than 40% of the species and individuals. Environmental changes affected the trophic structure with proportionally more herbivores (abundance) but fewer predators (species richness and abundance) in the oil palm plantation. Biodiversity, conservation and practical aspects of pest management were also highlighted in this study.

Discovery of a transparent sightline at ρ ≲ 20 kpc from an interacting pair of galaxies

NASA Astrophysics Data System (ADS)

Johnson, Sean D.; Chen, Hsiao-Wen; Mulchaey, John S.; Tripp, Todd M.; Prochaska, J. Xavier; Werk, Jessica K.

2014-03-01

We report the discovery of a transparent sightline at projected distances of ρ ≲ 20 kpc to an interacting pair of mature galaxies at z = 0.12. The sightline of the UV-bright quasar PG 1522+101 at zem = 1.328 passes at ρ = 11.5 kpc from the higher mass galaxy (M* = 1010.6 M⊙) and ρ = 20.4 kpc from the lower mass one (M* = 1010.0 M⊙). The two galaxies are separated by 9 kpc in projected distance and 30 km s-1 in line-of-sight velocity. Deep optical images reveal tidal features indicative of close interactions. Despite the small projected distances, the quasar sightline shows little absorption associated with the galaxy pair with a total H I column density no greater than log N({H I})/cm^{-2}=13.65. This limiting H I column density is already two orders of magnitude less than what is expected from previous halo gas studies. In addition, we detect no heavy-element absorption features associated with the galaxy pair with 3σ limits of log N({Mg II})/cm^{-2} < 12.2 and log N({O VI})/cm^{-2} < 13.7. The probability of seeing such little absorption in a sightline passing at a small projected distance from two non-interacting galaxies is 0.2 per cent. The absence of strong absorbers near the close galaxy pair suggests that the cool gas reservoirs of the galaxies have been significantly depleted by the galaxy interaction. These observations therefore underscore the potential impact of galaxy interactions on the gaseous haloes around galaxies.

Salvage logging versus the use of burnt wood as a nurse object to promote post-fire tree seedling establishment

USGS Publications Warehouse

Castro, J.; Allen, Craig D.; Molina-Morales, M.; Maranon-Jimenez, Sara; Sanchez-Miranda, A.; Zamora, R.

2011-01-01

Intense debate surrounds the effects of post-fire salvage logging (SL) versus nonintervention policies on forest regeneration, but scant support is available from experimental studies. We analyze the effect of three post-fire management treatments on the recruitment of a serotinous pine (Pinus pinaster) at a Mediterranean mountain. Treatments were applied 7 months after the fire and differ in the degree of intervention, ranging from “no intervention” (NI, all trees left standing) to “partial cut plus lopping” (PCL, felling most of the trees, cutting the main branches, and leaving all the biomass in situ without mastication), and “SL” (felling and piling the logs, and masticating the woody debris). Seedling survival after 3 years was the highest in PCL (47.3% versus 38.7% in SL). This was associated with the amelioration of microclimatic conditions under the scattered branches, which reduced radiation and soil temperature while increasing soil moisture. Seedling density after 2 years was approximately 5.5 times higher in PCL than in SL, as in SL a large fraction of seedlings was lost as a consequence of mechanized mastication. The NI treatment showed the lowest seedling survival (17.3%). Nevertheless, seedling density was similar to SL. Seedling growth scarcely differed among treatments. Our results show that branches left onsite acted as nurse objects that improved key microclimatic conditions for seedling recruitment. This creates a facilitative interaction ideal for seedling establishment in moisture-deficient ecosystems, as it provides the benefit of a shading overstory but without underground competition.

Performance of the AOAC use-dilution method with targeted modifications: collaborative study.

PubMed

Tomasino, Stephen F; Parker, Albert E; Hamilton, Martin A; Hamilton, Gordon C

2012-01-01

The U.S. Environmental Protection Agency (EPA), in collaboration with an industry work group, spearheaded a collaborative study designed to further enhance the AOAC use-dilution method (UDM). Based on feedback from laboratories that routinely conduct the UDM, improvements to the test culture preparation steps were prioritized. A set of modifications, largely based on culturing the test microbes on agar as specified in the AOAC hard surface carrier test method, were evaluated in a five-laboratory trial. The modifications targeted the preparation of the Pseudomonas aeruginosa test culture due to the difficulty in separating the pellicle from the broth in the current UDM. The proposed modifications (i.e., the modified UDM) were compared to the current UDM methodology for P. aeruginosa and Staphylococcus aureus. Salmonella choleraesuis was not included in the study. The goal was to determine if the modifications reduced method variability. Three efficacy response variables were statistically analyzed: the number of positive carriers, the log reduction, and the pass/fail outcome. The scope of the collaborative study was limited to testing one liquid disinfectant (an EPA-registered quaternary ammonium product) at two levels of presumed product efficacies, high and low. Test conditions included use of 400 ppm hard water as the product diluent and a 5% organic soil load (horse serum) added to the inoculum. Unfortunately, the study failed to support the adoption of the major modification (use of an agar-based approach to grow the test cultures) based on an analysis of method's variability. The repeatability and reproducibility standard deviations for the modified method were equal to or greater than those for the current method across the various test variables. However, the authors propose retaining the frozen stock preparation step of the modified method, and based on the statistical equivalency of the control log densities, support its adoption as a procedural change to the current UDM. The current UDM displayed acceptable responsiveness to changes in product efficacy; acceptable repeatability across multiple tests in each laboratory for the control counts and log reductions; and acceptable reproducibility across multiple laboratories for the control log density values and log reductions. Although the data do not support the adoption of all modifications, the UDM collaborative study data are valuable for assessing sources of method variability and a reassessment of the performance standard for the UDM.

A wood density and aboveground biomass variability assessment using pre-felling inventory data in Costa Rica.

PubMed

Svob, Sienna; Arroyo-Mora, J Pablo; Kalacska, Margaret

2014-12-01

The high spatio-temporal variability of aboveground biomass (AGB) in tropical forests is a large source of uncertainty in forest carbon stock estimation. Due to their spatial distribution and sampling intensity, pre-felling inventories are a potential source of ground level data that could help reduce this uncertainty at larger spatial scales. Further, exploring the factors known to influence tropical forest biomass, such as wood density and large tree density, will improve our knowledge of biomass distribution across tropical regions. Here, we evaluate (1) the variability of wood density and (2) the variability of AGB across five ecosystems of Costa Rica. Using forest management (pre-felling) inventories we found that, of the regions studied, Huetar Norte had the highest mean wood density of trees with a diameter at breast height (DBH) greater than or equal to 30 cm, 0.623 ± 0.182 g cm -3 (mean ± standard deviation). Although the greatest wood density was observed in Huetar Norte, the highest mean estimated AGB (EAGB) of trees with a DBH greater than or equal to 30 cm was observed in Osa peninsula (173.47 ± 60.23 Mg ha -1 ). The density of large trees explained approximately 50% of EAGB variability across the five ecosystems studied. Comparing our study's EAGB to published estimates reveals that, in the regions of Costa Rica where AGB has been previously sampled, our forest management data produced similar values. This study presents the most spatially rich analysis of ground level AGB data in Costa Rica to date. Using forest management data, we found that EAGB within and among five Costa Rican ecosystems is highly variable. Combining commercial logging inventories with ecological plots will provide a more representative ground level dataset for the calibration of the models and remotely sensed data used to EAGB at regional and national scales. Additionally, because the non-protected areas of the tropics offer the greatest opportunity to reduce rates of deforestation and forest degradation, logging inventories offer a promising source of data to support mechanisms such as the United Nations REDD + (Reducing Emissions from Tropical Deforestation and Degradation) program.

Empirical Estimates of Tree Carbon Storage Over a Century due to Fire Reduction in California Montane Conifer Forests.

NASA Astrophysics Data System (ADS)

Bouldin, J.

2008-12-01

Fire reduction policies are globally widespread and cause large changes in natural disturbance regimes. They should affect C accrual rates, but there is uncertainty in both modeling- and empirically-based estimates on the rate, and sometimes even the sign thereof, due to a lack of high quality data and to the confounding by logging or other ecological changes. Here I present data on tree density and C stock changes over 93 years from a never-logged, mid-montane (1370 to 2130 m) landscape in the central Sierra Nevada, California. Literature-based mean pre-1870 fire return intervals in the region were on the order of 8 to 20 years, but declined precipitously afterwards. The area was originally sampled without bias in 1911, and in 2004 I randomly re-sampled 20 1.6 ha plots in the area. I found very large increases in tree density and tree C, with mean tree densities increasing in each of 13 diameter classes. Total density increased from 54 to 289 trees per ha (530 percent); the smallest diameter class increased 1100 percent while progressively larger classes had smaller relative increases. Allometrically estimated increases in tree C across the size classes were more uniform, and total tree C, excluding fine roots, increased from 100 to 228 Mg C per ha. These values very likely underestimate ecosystem C gain, because likely increases in snags, down logs, small trees, shrubs, and forest litter and duff are not included. Also, sheep grazing likely hampered regeneration in the few decades following initial fire declines, and recent controlled burns in 65 percent of the plots have likely reduced C levels somewhat. In many Sierran locations, controlled burns are now quite risky due to increased fuel loads and the consequent risk of historically unnatural catastrophic crown fires. Such fires instantly release very high C amounts and continue to emit C for many years due to dead wood decomposition and increased soil respiration. There is also a substantial risk of permanent conversion to shrub dominated systems in a warmer dryer climate, as forests and shrublands comprise a climatically-determined unstable equilibrium in the Sierra. These results are important relative to GHG reduction and land management policies in landscapes naturally prone to burning.

STUDYING THE WHIM CONTENT OF LARGE-SCALE STRUCTURES ALONG THE LINE OF SIGHT TO H 2356-309

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zappacosta, L.; Nicastro, F.; Maiolino, R.

2010-07-01

We make use of a 500 ks Chandra HRC-S/LETG spectrum of the blazar H 2356-309, combined with a lower signal-to-noise ratio (S/N; 100 ks) pilot LETG spectrum of the same target, to search for the presence of warm-hot absorbing gas associated with two large-scale structures (LSSs) crossed by this sight line and to constrain its physical state and geometry. Strong (log N{sub O{sub VII}} {>=} 10{sup 16} cm{sup -2}) O VII K{alpha} absorption associated with a third LSS crossed by this line of sight (the Sculptor Wall (SW)), at z = 0.03, has already been detected in a previous work.more » Here, we focus on two additional prominent filamentary LSSs along the same line of sight, one at z = 0.062 (the Pisces-Cetus Supercluster (PCS)) and another at z = 0.128 (the 'Farther Sculptor Wall' (FSW)). The combined LETG spectrum has an S/N of {approx}11.6-12.6 per resolution element in the 20-25 A and an average 3{sigma} sensitivity to intervening O VII K{alpha} absorption line equivalent widths (EWs) of EW{sub O{sub VII}} {approx_gt} 14 mA in the available redshift range (z < 0.165). No statistically significant (i.e., {>=}3{sigma}) individual absorption is detected from any of the strong He- or H-like transitions of C, O, and Ne (the most abundant metals in gas with solar-like composition) at the redshifts of the PCS and FSW structures and down to the EW thresholds mentioned above. However, we are still able to constrain the physical and geometrical parameters of the putative absorbing gas associated with these structures, by performing a joint spectral fit of various marginal detections and upper limits of the strongest expected lines with our self-consistent hybrid-ionization WHIM spectral model. At the redshift of the PCS, we identify a warm phase with log T = 5.35{sup +0.07}{sub -0.13} K and log N{sub H} = (19.1 {+-} 0.2) cm{sup -2} possibly co-existing with a much hotter and statistically less significant phase with log T = 6.9{sup +0.1}{sub -0.8} K and log N{sub H} = 20.1{sup +0.3}{sub -1.7} cm{sup -2} (1{sigma} errors). These two separate physical phases are identified through, and mainly constrained by, C V K{alpha} (warm phase) and O VIII K{alpha} (hot phase) absorption, with single line significances of 1.5{sigma} each. For the second LSS, at z {approx_equal} 0.128, only one hot component is hinted in the data, through O VIII K{alpha} (1.6{sigma}) and Ne IX K{alpha} (1.2{sigma}). For this system, we estimate log T = 6.6{sup +0.1}{sub -0.2} K and log N{sub H} = 19.8{sup +0.4}{sub -0.8} cm{sup -2}. Our column density and temperature constraints on the warm-hot gaseous content of these two LSSs, combined with the measurements obtained for the hot gas permeating the SW, allow us to estimate the cumulative number density per unit redshifts of O VII WHIM absorbers at three different EW thresholds of 0.4 mA, 7 mA, and 25.8 mA. This is consistent with expectations only at the very low end of EW thresholds, but exceeds predictions at 7 mA and 25.8 mA (by more than 2{sigma}). We also estimate the cosmological mass density of the WHIM based on the four absorbers we tentatively detect along this line of sight, obtaining {Omega}{sup WHIM}{sub b} = (0.021{sup +0.031}{sub -0.018})(Z/Z{sub sun}){sup -1}, consistent with the cosmological mass density of the intergalactic 'missing baryons' only if we assume high metallicities (Z {approx} Z{sub sun}).« less

Measurement of the distribution of ventilation-perfusion ratios in the human lung with proton MRI: comparison with the multiple inert-gas elimination technique.

PubMed

Sá, Rui Carlos; Henderson, A Cortney; Simonson, Tatum; Arai, Tatsuya J; Wagner, Harrieth; Theilmann, Rebecca J; Wagner, Peter D; Prisk, G Kim; Hopkins, Susan R

2017-07-01

We have developed a novel functional proton magnetic resonance imaging (MRI) technique to measure regional ventilation-perfusion (V̇ A /Q̇) ratio in the lung. We conducted a comparison study of this technique in healthy subjects ( n = 7, age = 42 ± 16 yr, Forced expiratory volume in 1 s = 94% predicted), by comparing data measured using MRI to that obtained from the multiple inert gas elimination technique (MIGET). Regional ventilation measured in a sagittal lung slice using Specific Ventilation Imaging was combined with proton density measured using a fast gradient-echo sequence to calculate regional alveolar ventilation, registered with perfusion images acquired using arterial spin labeling, and divided on a voxel-by-voxel basis to obtain regional V̇ A /Q̇ ratio. LogSDV̇ and LogSDQ̇, measures of heterogeneity derived from the standard deviation (log scale) of the ventilation and perfusion vs. V̇ A /Q̇ ratio histograms respectively, were calculated. On a separate day, subjects underwent study with MIGET and LogSDV̇ and LogSDQ̇ were calculated from MIGET data using the 50-compartment model. MIGET LogSDV̇ and LogSDQ̇ were normal in all subjects. LogSDQ̇ was highly correlated between MRI and MIGET (R = 0.89, P = 0.007); the intercept was not significantly different from zero (-0.062, P = 0.65) and the slope did not significantly differ from identity (1.29, P = 0.34). MIGET and MRI measures of LogSDV̇ were well correlated (R = 0.83, P = 0.02); the intercept differed from zero (0.20, P = 0.04) and the slope deviated from the line of identity (0.52, P = 0.01). We conclude that in normal subjects, there is a reasonable agreement between MIGET measures of heterogeneity and those from proton MRI measured in a single slice of lung. NEW & NOTEWORTHY We report a comparison of a new proton MRI technique to measure regional V̇ A /Q̇ ratio against the multiple inert gas elimination technique (MIGET). The study reports good relationships between measures of heterogeneity derived from MIGET and those derived from MRI. Although currently limited to a single slice acquisition, these data suggest that single sagittal slice measures of V̇ A /Q̇ ratio provide an adequate means to assess heterogeneity in the normal lung. Copyright © 2017 the American Physiological Society.

Using the Forest Vegetation Simulator to reconstruct historical stand conditions in the Colorado Front Range

Treesearch

Paula J. Fornwalt; Merrill R. Kaufmann; Laurie S. Huckaby; Jason M. Stoker

2002-01-01

Presettlement ponderosa pine/Douglas-fir forests of the Colorado Front Range were open and heterogeneous. Logging, grazing, and fire suppression over past 100 to150 years have altered stand structure by changing diameter distributions and increasing overstory density. In an effort to guide forest restoration toward presettlement conditions, we are currently using the...

Aboveground biomass variability across intact and degraded forests in the Brazilian Amazon

Treesearch

Marcos Longo; Michael Keller; Maiza N. dos-Santos; Veronika Leitold; Ekena R. Pinagé; Alessandro Baccini; Sassan Saatchi; Euler M. Nogueira; Mateus Batistella; Douglas C. Morton

2016-01-01

Deforestation rates have declined in the Brazilian Amazon since 2005, yet degradation from logging, fire, and fragmentation has continued in frontier forests. In this study we quantified the aboveground carbon density (ACD) in intact and degraded forests using the largest data set of integrated forest inventory plots (n = 359) and airborne lidar data (18,000 ha)...

Association of lifestyle with serum lipid levels: a study of middle-aged Japanese men.

PubMed

Nakanishi, N; Tatara, K; Nakamura, K; Suzuki, K

2000-07-01

Cross-sectional associations between lifestyle and serum lipid levels were examined in 1591 Japanese male office workers aged 35 to 59 years in Osaka, Japan. From multiple linear regression analyses, significant correlates with low-density lipoprotein (LDL) cholesterol, high-density lipoprotein (HDL) cholesterol, and Log triglyceride levels and the ratio of LDL cholesterol to HDL cholesterol were, in the order of relative importance: BMI, alcohol intake (negative) and age for LDL cholesterol level; BMI (negative), cigarette smoking (negative), alcohol intake, consideration for nutritional balance, hours of brisk walking, hours of walking at an ordinary pace and physical exercise for HDL cholesterol level; BMI, cigarette smoking, consideration for nutritional balance (negative), hours of work (negative), alcohol intake and coffee drinking (negative) for Log triglyceride level; and BMI, alcohol intake (negative), cigarette smoking, consideration for nutritional balance (negative), age, hours of brisk walking (negative) and the frequency of snack intake between meals for the ratio of LDL cholesterol to HDL cholesterol. Our data suggest that obesity, cigarette smoking and snack intake between meals are atherogenic whereas alcohol consumption, consideration for nutritional balance and walking long hours, especially at a brisk pace, are anti-atherogenic in middle-aged Japanese men.

Gravitational clustering in the expanding universe - Controlled high-resolution studies in two dimensions

NASA Technical Reports Server (NTRS)

Beacom, John Francis; Dominik, Kurt G.; Melott, Adrian L.; Perkins, Sam P.; Shandarin, Sergei F.

1991-01-01

Results are presented from a series of gravitational clustering simulations in two dimensions. These simulations are a significant departure from previous work, since in two dimensions one can have large dynamic range in both length scale and mass using present computer technology. Controlled experiments were conducted by varying the slope of power-law initial density fluctuation spectra and varying cutoffs at large k, while holding constant the phases of individual Fourier components and the scale of nonlinearity. Filaments are found in many different simulations, even with pure power-law initial conditions. By direct comparison, filaments, called 'second-generation pancakes' are shown to arise as a consequence of mild nonlinearity on scales much larger than the correlation length and are not relics of an initial lattice or due to sparse sampling of the Fourier components. Bumps of low amplitude in the two-point correlation are found to be generic but usually only statistical fluctuations. Power spectra are much easier to relate to initial conditions, and seem to follow a simple triangular shape (on log-log plot) in the nonlinear regime. The rms density fluctuation with Gaussian smoothing is the most stable indicator of nonlinearity.

On the probability density function and characteristic function moments of image steganalysis in the log prediction error wavelet subband

NASA Astrophysics Data System (ADS)

Bao, Zhenkun; Li, Xiaolong; Luo, Xiangyang

2017-01-01

Extracting informative statistic features is the most essential technical issue of steganalysis. Among various steganalysis methods, probability density function (PDF) and characteristic function (CF) moments are two important types of features due to the excellent ability for distinguishing the cover images from the stego ones. The two types of features are quite similar in definition. The only difference is that the PDF moments are computed in the spatial domain, while the CF moments are computed in the Fourier-transformed domain. Then, the comparison between PDF and CF moments is an interesting question of steganalysis. Several theoretical results have been derived, and CF moments are proved better than PDF moments in some cases. However, in the log prediction error wavelet subband of wavelet decomposition, some experiments show that the result is opposite and lacks a rigorous explanation. To solve this problem, a comparison result based on the rigorous proof is presented: the first-order PDF moment is proved better than the CF moment, while the second-order CF moment is better than the PDF moment. It tries to open the theoretical discussion on steganalysis and the question of finding suitable statistical features.

Gene Methylation and Cytological Atypia in Random Fine-Needle Aspirates for Assessment of Breast Cancer Risk.

PubMed

Stearns, Vered; Fackler, Mary Jo; Hafeez, Sidra; Bujanda, Zoila Lopez; Chatterton, Robert T; Jacobs, Lisa K; Khouri, Nagi F; Ivancic, David; Kenney, Kara; Shehata, Christina; Jeter, Stacie C; Wolfman, Judith A; Zalles, Carola M; Huang, Peng; Khan, Seema A; Sukumar, Saraswati

2016-08-01

Methods to determine individualized breast cancer risk lack sufficient sensitivity to select women most likely to benefit from preventive strategies. Alterations in DNA methylation occur early in breast cancer. We hypothesized that cancer-specific methylation markers could enhance breast cancer risk assessment. We evaluated 380 women without a history of breast cancer. We determined their menopausal status or menstrual cycle phase, risk of developing breast cancer (Gail model), and breast density and obtained random fine-needle aspiration (rFNA) samples for assessment of cytopathology and cumulative methylation index (CMI). Eight methylated gene markers were identified through whole-genome methylation analysis and included novel and previously established breast cancer detection genes. We performed correlative and multivariate linear regression analyses to evaluate DNA methylation of a gene panel as a function of clinical factors associated with breast cancer risk. CMI and individual gene methylation were independent of age, menopausal status or menstrual phase, lifetime Gail risk score, and breast density. CMI and individual gene methylation for the eight genes increased significantly (P < 0.001) with increasing cytological atypia. The findings were verified with multivariate analyses correcting for age, log (Gail), log (percent density), rFNA cell number, and body mass index. Our results demonstrate a significant association between cytological atypia and high CMI, which does not vary with menstrual phase or menopause and is independent of Gail risk and mammographic density. Thus, CMI is an excellent candidate breast cancer risk biomarker, warranting larger prospective studies to establish its utility for cancer risk assessment. Cancer Prev Res; 9(8); 673-82. ©2016 AACR. ©2016 American Association for Cancer Research.

Femtosecond laser correction of presbyopia (INTRACOR) in emmetropes using a modified pattern.

PubMed

Thomas, Bettina C; Fitting, Anna; Auffarth, Gerd U; Holzer, Mike P

2012-12-01

To evaluate functional results and corneal changes after femtosecond laser correction of presbyopia (INTRACOR, Technolas Perfect Vision GmbH) in emmetropes using a modified treatment pattern over a 12-month period. Twenty eyes from 20 emmetropic patients were treated with a modified intrastromal INTRACOR pattern consisting of 5 central rings and 8 radial cuts in a prospective, nonrandomized, uncontrolled, open, single-center, clinical study. Refraction, visual acuity, endothelial cell density, corneal pachymetry, total corneal power, and stray light were evaluated preoperatively and 1 (except endothelial cell density and stray light), 3, 6, and 12 months postoperatively. Patients filled out a subjective questionnaire at 12 months postoperatively. Comparison of preoperative versus 12-month postoperative median values revealed a significant improvement in uncorrected near visual acuity (UNVA) from 0.60 (20/80) to 0.10 logMAR (20/25) (P<.0001) and a significant decrease in corrected distance visual acuity (CDVA) from -0.10 (20/16) to 0.00 logMAR (20/20), which equals a median loss of one line (P=.0005). Fifteen percent of patients lost two lines of CDVA in the treated eye. Subjective spherical equivalent refraction remained unchanged at 0.00 diopters (D) (P=.194). After INTRACOR treatment, significant corneal steepening of 1.40 D and midperipheral flattening of 0.50 D occurred (both P<.0001). Corneal pachymetry at the thinnest point and endothelial cell density did not change significantly (P=.829 and P=.058, respectively). After 12 months, the modified INTRACOR pattern improved UNVA in emmetropic patients without inducing a myopic shift or significant changes in endothelial cell density or pachymetry. Copyright 2012, SLACK Incorporated.

Effects of management practices on yield and quality of milk from smallholder dairy units in urban and peri-urban Morogoro, Tanzania.

PubMed

Gillah, Kejeri A; Kifaro, George C; Madsen, Jorgen

2014-10-01

A longitudinal study design was used to assess the management, chemical composition of cows' milk and quantify the microbial load of raw milk produced at farm level. Data were collected between December 2010 and September 2011 in Morogoro municipality. Milk samples were collected once every month and analysed for butter fat (BF), crude protein (CP), total solids (TS) and solids non-fat (SNF). Total bacterial count (TBC) and coliform counts (CC) were normalized by log transformation. The average milk yield was 7.0 l/day and was not influenced by feeding systems and breeds. Dairy cows owned by people who had no regular income produced more milk than government employees and retired officers. Means of BF, TS, SNF and CP were similar in different feeding systems. Wet season had significantly higher TBC (5.9 log10 cfu/ml) and CC (2.4 log10 cfu/ml) but feeding systems had no effect. Stocking density influenced TBC but not CC. It can be concluded that dairy cows produced low milk yield and its quality was poor.

VALORATE: fast and accurate log-rank test in balanced and unbalanced comparisons of survival curves and cancer genomics.

PubMed

Treviño, Victor; Tamez-Pena, Jose

2017-06-15

The association of genomic alterations to outcomes in cancer is affected by a problem of unbalanced groups generated by the low frequency of alterations. For this, an R package (VALORATE) that estimates the null distribution and the P -value of the log-rank based on a recent reformulation is presented. For a given number of alterations that define the size of survival groups, the log-rank density is estimated by a weighted sum of conditional distributions depending on a co-occurrence term of mutations and events. The estimations are accurately accelerated by sampling across co-occurrences allowing the analysis of large genomic datasets in few minutes. In conclusion, the proposed VALORATE R package is a valuable tool for survival analysis. The R package is available in CRAN at https://cran.r-project.org and in http://bioinformatica.mty.itesm.mx/valorateR . vtrevino@itesm.mx. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Task-specific kinetic finger tremor affects the performance of carrom players.

PubMed

Kahathuduwa, Chanaka N; Weerasinghe, Vajira S; Dassanayake, Tharaka L; Priyadarshana, Rajeewa; Dissanayake, Arunika L; Perera, Christine

2016-01-01

We aimed to determine the effect of task-specific kinetic finger tremor, as indexed by surface electromyography (EMG), on the accuracy of a carrom stroke. Surface EMG of extensor digitorum communis muscle of the playing arm was recorded during rest, isometric contraction and stroke execution in 17 male carrom players with clinically observed finger tremor and 18 skill- and age-matched controls. Log-transformed power spectral densities (LogPSDs) of surface EMG activity (signifying tremor severity) at a 1-s pre-execution period correlated with angular error of the stroke. LogPSDs in 4-10 Hz range were higher in players with tremor than controls during pre-execution (P < 0.001), but not during the resting state (P = 0.067). Pre-execution tremor amplitude correlated with angular deviation (r = 0.45, P = 0.007). For the first time, we document a task-specific kinetic finger tremor in carrom players. This finger tremor during the immediate pre-execution phase appears to be a significant determinant of stroke accuracy.

The Binary Central Star of the Planetary Nebula A35

NASA Astrophysics Data System (ADS)

Herald, J. E.; Bianchi, L.

2002-11-01

Using new Far Ultraviolet Spectroscopic Explorer (FUSE) observations in conjunction with Space Telescope Imaging Spectrograph (STIS) and International Ultraviolet Explorer archive data, we have modeled both components of the binary central star of the planetary nebula A35. The white dwarf (the ionizing star) was modeled using the non-LTE, plane-parallel code TLUSTY. We find its parameters to be Teff=80+/-3 kK, logg=7.70+0.13-0.18 cm s-2, and [He/H]=-4+/-1 and C, N, O, Si, and Fe to be underabundant by 2 orders of magnitude with respect to their solar values. This confirms its classification as a DAO white dwarf, and using the Hipparcos distance D=163 pc, we derive a radius of RWD~=1.65×10-2 Rsolar and a mass of M~=0.5 Msolar. The modeling of the far-ultraviolet spectra also constrains the extinction value; EB-V=0.04+/-0.01. Furthermore, the FUSE and STIS data allow us to measure the molecular hydrogen (H2) and neutral hydrogen (H I) column densities along the sight line, the majority of which we believe is associated with the circumstellar material. The FUSE spectrum is best fitted with a two-component model for H2, consisting of a cool component (T=200 K) with logN(H2,cool)=19.6+0.1-0.2 cm-2 and a hot component (T~=1250 K) with logN(H2,hot)=17.4+0.3-0.4 cm-2. The H I column density is logN(HI)=20.9+/-0.1 cm-2. Assuming a typical gas/dust ratio for the interstellar medium, our value of EB-V implies that logN(HI)=20.8 cm-2 of this is circumstellar. Our low extinction value and the measured column densities imply that there is essentially no dust in the nebula. Assuming that the neutral and molecular hydrogen is contained in a sphere of comparable dimensions to the ionized shell, we derive the combined mass of the circumstellar H I and H2 to be ~2.7 Msolar. Other geometries, such as a shell surrounding the ionized region, can be excluded. The mass of the ionized hydrogen is <~1% that of the neutral material. From comparison with evolutionary calculations, we estimate the progenitor mass to be ~3.2 Msolar. Based on observations made with the NASA-CNES-CSA Far Ultraviolet Spectroscopic Explorer. FUSE is operated for NASA by Johns Hopkins University under NASA contract NAS5-32985.

H I CONTENT AND OPTICAL PROPERTIES OF FIELD GALAXIES FROM THE ALFALFA SURVEY. II. MULTIVARIATE ANALYSIS OF A GALAXY SAMPLE IN LOW-DENSITY ENVIRONMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toribio, M. Carmen; Solanes, Jose M.; Giovanelli, Riccardo

This is the second paper of two reporting results from a study of the H I content and stellar properties of nearby galaxies detected by the Arecibo Legacy Fast ALFA blind 21 cm line survey and the Sloan Digital Sky Survey in a 2160 deg{sup 2} region of high galactic latitude sky covered by both surveys, in the general Virgo direction. Here, we analyze a complete H I flux-limited subset of 1624 objects with homogeneously measured 21 cm and multi-wavelength optical attributes extracted from the control sample of H I emitters in environments of low local galactic density assembled bymore » Toribio et al. (Paper I). Strategies of multivariate data analysis are applied to this data set in order to (i) investigate the correlation structure of the space defined by an extensive set of potentially independent observables describing gas-rich systems, (ii) identify the intrinsic parameters that best define their neutral gas content, and (iii) explore the scaling relations arising from the joint distributions of the quantities most strongly correlated with the H I mass. The principal component analysis performed over a set of five galaxy properties reveals that they are strongly interrelated, supporting previous claims that nearby H I emitters show a high degree of correlation. The best predictors for the expected value of M{sub HI} are the diameter of the stellar disk, D{sub 25,r}, followed by the total luminosity (both in the r band), and the maximum rotation speed, while morphological proxies such as color show only a moderately strong correlation with the gaseous content attenuated by observational error. Among the various inferred prescriptions, the simplest and most accurate is log(M{sub HI}/M{sub sun}) = 8.72 + 1.25 log(D{sub 25,r}/kpc). We find a slope of -8.2 {+-} 0.5 for the relation between optical magnitude and log rotation speed, in good agreement with Tully-Fisher studies, as well as a log slope of 1.55 {+-} 0.06 for the H I mass-optical galaxy size relation. Given the homogeneity of the measurements and the completeness of our data set, the latter outcome suggests that the constancy of the average (hybrid) H I surface density advocated by some authors for the spiral population is just a crude approximation.« less

Iterative decoding of SOVA and LDPC product code for bit-patterned media recoding

NASA Astrophysics Data System (ADS)

Jeong, Seongkwon; Lee, Jaejin

2018-05-01

The demand for high-density storage systems has increased due to the exponential growth of data. Bit-patterned media recording (BPMR) is one of the promising technologies to achieve the density of 1Tbit/in2 and higher. To increase the areal density in BPMR, the spacing between islands needs to be reduced, yet this aggravates inter-symbol interference and inter-track interference and degrades the bit error rate performance. In this paper, we propose a decision feedback scheme using low-density parity check (LDPC) product code for BPMR. This scheme can improve the decoding performance using an iterative approach with extrinsic information and log-likelihood ratio value between iterative soft output Viterbi algorithm and LDPC product code. Simulation results show that the proposed LDPC product code can offer 1.8dB and 2.3dB gains over the one LDPC code at the density of 2.5 and 3 Tb/in2, respectively, when bit error rate is 10-6.

The thermal maturation degree of organic matter from source rocks revealed by wells logs including examples from Murzuk Basin, Libya

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negoita, V.; Gheorghe, A.

1995-08-01

The customary technique used to know the organic matter quantity per rock volume it as well as the organic matter maturation stage is based on geochemical analyses accomplished on a preselected number of samples and cuttings drawn from boreholes during the drilling period. But the same objectives can be approached without any extra cost using the continuous measurements of well logs recorded in each well from the ground surface to the total depth. During the diagenetic stage, the identification of potential source rocks out of which no hydrocarbon have been generated may be carried out using a well logging suitemore » including Gamma Ray Spectrometry, the Compensated Neutron/Litho Density combination and a Dual Induction/Sonic Log. During the catagenetic stage the onset of oil generation brings some important changes in the organic matter structure as well as in the fluid distribution throughout the pore space of source rocks. The replacement of electric conductive water by electric non-conductive hydrocarbons, together with water and oil being expelled from source rocks represent a process of different intensities dependent of time/temperature geohistory and kerogen type. The different generation and expulsion scenarios of hydrocarbons taking place during the catagenetic and metagenetic stages of source rocks are very well revealed by Induction and Laterolog investigations. Several crossplots relating vitrinite reflectance, total organic carbon and log-derived physical parameters are illustrated and discussed. The field applications are coming from Murzuk Basin, where Rompetrol of Libya is operating.« less

Recognition and delineation of Paleokarst zones by the use of wireline logs in the bitumen-saturated upper Devonian Grosmont formation of Northeastern Alberta, Canada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dembicki, E.A.; Machel, H.G.

1996-05-01

The Upper Devonian Grosmont Formation in northeastern Alberta, Canada, is a shallow-marine carbonate platform complex that was subaerially exposed for hundreds of millions of years between the Mississippian(?) and Cretaceous. During this lengthy exposure period, an extensive karst system developed that is characterized by an irregular erosional surface, meter-size (several feet) dissolution cavities, collapse breccias, sinkholes, paleosols, and fractures. The karsted Grosmont Formation, which contains giant reserves of bitumen, sub-crops beneath Cretaceous clastic sediments of the giant Athabasca tar sands deposit. The paleokarst in the Grosmont Formation can be recognized on wireline logs in relatively nonargillaceous carbonate intervals (<30 APImore » units on the gamma-ray log) as excursions of the caliper log, off-scale neutron-density porosity readings, and severe cycle skipping of the acoustic log. The paleokarst is more prevalent in the upper units of the Grosmont Formation, and the effects of karstification decrease toward stratigraphically older and deeper units. The paleokarst usually occurs within 35 m (115 ft) of the erosional surface. The reservoir properties of the Grosmont Formation (e.g., thickness, porosity, permeability, and seal effectiveness) are significantly influenced by karstification. Depending upon the location, karstification has either benefited or degraded the reservoir characteristics. Benefits include porosity values greater than 40% (up to 100% in caverns) and permeability values of 30,000 md in severely fractured intervals. Detrimental reservoir characteristics include erosion, porosity and permeability reduction, and seal ineffectiveness.« less

Direct potable reuse microbial risk assessment methodology: Sensitivity analysis and application to State log credit allocations.

PubMed

Soller, Jeffrey A; Eftim, Sorina E; Nappier, Sharon P

2018-01-01

Understanding pathogen risks is a critically important consideration in the design of water treatment, particularly for potable reuse projects. As an extension to our published microbial risk assessment methodology to estimate infection risks associated with Direct Potable Reuse (DPR) treatment train unit process combinations, herein, we (1) provide an updated compilation of pathogen density data in raw wastewater and dose-response models; (2) conduct a series of sensitivity analyses to consider potential risk implications using updated data; (3) evaluate the risks associated with log credit allocations in the United States; and (4) identify reference pathogen reductions needed to consistently meet currently applied benchmark risk levels. Sensitivity analyses illustrated changes in cumulative annual risks estimates, the significance of which depends on the pathogen group driving the risk for a given treatment train. For example, updates to norovirus (NoV) raw wastewater values and use of a NoV dose-response approach, capturing the full range of uncertainty, increased risks associated with one of the treatment trains evaluated, but not the other. Additionally, compared to traditional log-credit allocation approaches, our results indicate that the risk methodology provides more nuanced information about how consistently public health benchmarks are achieved. Our results indicate that viruses need to be reduced by 14 logs or more to consistently achieve currently applied benchmark levels of protection associated with DPR. The refined methodology, updated model inputs, and log credit allocation comparisons will be useful to regulators considering DPR projects and design engineers as they consider which unit treatment processes should be employed for particular projects. Published by Elsevier Ltd.

Measuring colour rivalry suppression in amblyopia.

PubMed

Hofeldt, T S; Hofeldt, A J

1999-11-01

To determine if the colour rivalry suppression is an index of the visual impairment in amblyopia and if the stereopsis and fusion evaluator (SAFE) instrument is a reliable indicator of the difference in visual input from the two eyes. To test the accuracy of the SAFE instrument for measuring the visual input from the two eyes, colour rivalry suppression was measured in six normal subjects. A test neutral density filter (NDF) was placed before one eye to induce a temporary relative afferent defect and the subject selected the NDF before the fellow eye to neutralise the test NDF. In a non-paediatric private practice, 24 consecutive patients diagnosed with unilateral amblyopia were tested with the SAFE. Of the 24 amblyopes, 14 qualified for the study because they were able to fuse images and had no comorbid disease. The relation between depth of colour rivalry suppression, stereoacuity, and interocular difference in logMAR acuity was analysed. In normal subjects, the SAFE instrument reversed temporary defects of 0.3 to 1. 8 log units to within 0.6 log units. In amblyopes, the NDF to reverse colour rivalry suppression was positively related to interocular difference in logMAR acuity (beta=1.21, p<0.0001), and negatively related to stereoacuity (beta=-0.16, p=0.019). The interocular difference in logMAR acuity was negatively related to stereoacuity (beta=-0.13, p=0.009). Colour rivalry suppression as measured with the SAFE was found to agree closely with the degree of visual acuity impairment in non-paediatric patients with amblyopia.

Geophysical characterization of an active hydrothermal shear zone in granitic rocks

NASA Astrophysics Data System (ADS)

Zahner, Tobias; Baron, Ludovic; Holliger, Klaus; Egli, Daniel

2016-04-01

Hydrothermally active faults and shear zones in the crystalline massifs of the central Alps are currently of particular interest because of their potential similarities and analogies with planned deep petrothermal reservoirs in the Alpine foreland. In order to better understand such hydrothermal systems, a near-vertical, hydrothermally active shear zone embedded in low-permeability granitic rocks has been drilled. This borehole is located on the Grimsel Pass in the central Swiss Alps, has an inclination of 24 degrees with regard to the vertical, and crosses the targeted shear zone between about 82 and 86 meters depth. The borehole has been fully cored and a comprehensive suite of geophysical logging data has been acquired. The latter comprises multi-frequency sonic, ground-penetrating radar, resistivity, self-potential, gamma-gamma, neutron-neutron, optical televiewer, and caliper log data. In addition to this, we have also performed a surface-to-borehole vertical seismic profiling experiment. The televiewer data and the retrieved core samples show a marked increase of the fracture density in the target region, which also finds its expression in rather pronounced and distinct signatures in all other log data. Preliminary results point towards a close correspondence between the ground-penetrating radar and the neutron-neutron log data, which opens the perspective of constraining the effective fracture porosity at vastly differing scales. There is also remarkably good agreement between the sonic log and the vertical seismic profiling data, which may allow for assessing the permeability of the probed fracture network by interpreting these data in a poroelastic context.

Depth of suppression in anisometropic amblyopia (with or without microtropia).

PubMed

Firth, Alison Y; Stevenson, Clare

2012-01-01

There are conflicting reports concerning the relationship between depth of suppression and level of amblyopia in strabismics. Little attention has been given to anisometropes. This study examines the density of suppression in anisometropic amblyopes, with or without microtropia, and investigates whether there is a relationship with level of amblyopia. Patients with anisometropia (defined as a difference of 1D or 0.5 D cyl), binocular single vision and a difference in corrected visual acuity of at least 0.1 logMAR between eyes were recalled. The degree of amblyopia was expressed as the interocular difference using the Bailey-Lovie logMAR chart. Stereoacuity (Titmus test), binocular alignment and fixation were recorded. The depth of suppression was measured using the neutral density filter bar together with the Worth four dot test at 4.5m (subtending an angle of 0.5 degrees). Best spherical equivalent (BSE) was calculated to represent anisometropia. Thirteen participants aged 8.3 years to 12.1 years (mean 9.7 years) completed the study. No significant correlation was present (r=0.10, p=0.74) between the depth of suppression and degree of amblyopia. However, there was a correlation between depth of suppression and level of stereoacuity (r=0.59, p=0.03). Six participants had microtropia and showed stronger suppression (p=0.03) and worse stereoacuity (p=0.001) than the pure anisometropes. No evidence was found of a relationship between density of suppression and amblyopia in this cohort of anisometropic amblyopes.

Fracture Characterization in the Astor Pass Geothermal Field, Nevada

NASA Astrophysics Data System (ADS)

Walsh, D. C.; Reeves, D. M.; Pohll, G.; Lyles, B. F.; Cooper, C. A.

2011-12-01

The Astor Pass geothermal field, near Pyramid Lake, NV, is under study as a site of potential geothermal energy production. Three wells have been completed in the graben of this typical Basin and Range geologic setting. Lithologies include a layer of unconsolidated sediment (basin fill) underlain by various tertiary volcanic units and granodiorite and metavolcanic basement rock. Characterization of fractures within the relatively impermeable rock matrix is being conducted for the three wells. Statistical analysis of fracture orientation, densities, and spacing obtained from borehole imaging logs is used to determine stress orientation and to generate a statistically equivalent Discrete Fracture Network (DFN) model. Fractures at depth are compared to fracture data collected in nearby outcrops of the same lithologic stratigraphy. Fracture geometry and density is correlated to mechanically discrete layers within the stratigraphy to test whether variations in fracturing can be attributed to variations in Young's modulus. Correlation of fracture geometry and densities with spinner flowmeter logs and distributed temperature sensor records are made in an effort to identify potential flowing fracture zones intersecting the borehole. Mean fracture aperture is obtained from open fracture counts and reservoir-scale transmissivity values (computed from a 30 day pump test) in the absence of readily available aperture data. The goal of this thorough fracture characterization is to create a physically relevant model which may be coupled with a multipurpose fluid flow and thermal simulator for investigation of geothermal reservoir behavior, particularly at the borehole scale.

Linking non-culturable (qPCR) and culturable enterococci densities with hydrometeorological conditions

USGS Publications Warehouse

Byappanahalli, Muruleedhara N.; Whitman, Richard L.; Shively, Dawn A.; Nevers, Meredith B.

2010-01-01

Quantitative polymerase chain reaction (qPCR) measurement of enterococci has been proposed as a rapid technique for assessment of beach water quality, but the response of qPCR results to environmental conditions has not been fully explored. Culture-based E. coli and enterococci have been used in empirical predictive models to characterize their responses to environmental conditions and to increase monitoring frequency and efficiency. This approach has been attempted with qPCR results only in few studies. During the summer of 2006, water samples were collected from two southern Lake Michigan beaches and the nearby river outfall (Burns Ditch) and were analyzed for enterococci by culture-based and non-culture-based (i.e., qPCR) methods, as well as culture-based E. coli. Culturable enterococci densities (log CFU/100 ml) for the beaches were significantly correlated with enterococci qPCR cell equivalents (CE) (R = 0.650, P N = 32). Enterococci CE and CFU densities were highest in Burns Ditch relative to the beach sites; however, only CFUs were significantly higher (P R = 0.565, P N = 32). Culturable E. coli and enterococci densities were significantly correlated (R = 0.682, P N = 32). Regression analyses suggested that enterococci CFU could be predicted by lake turbidity, Burns Ditch discharge, and wind direction (adjusted R2 = 0.608); enterococci CE was best predicted by Burns Ditch discharge and log-transformed lake turbidity × wave height (adjusted R2 = 0.40). In summary, our results show that analytically, the qPCR method compares well to the non-culture-based method for measuring enterococci densities in beach water and that both these approaches can be predicted by hydrometeorological conditions. Selected predictors and model results highlight the differences between the environmental responses of the two method endpoints and the potentially high variance in qPCR results

Détection des transitions lithologiques par l'analyse de la composante fractale des diagraphies par transformée continue en ondelettes

NASA Astrophysics Data System (ADS)

Zaourar, Naima; Hamoudi, Mohamed; Briqueu, Louis

2006-06-01

The frequency analysis of many log data permits to verify that their stochastic component show 'power-law-type' spectral densities, characteristic of 1/f noise. They can be modelled by fractional Brownian motions. Continuous Wavelet Transformation (CWT) provides us with very efficient methods to determine the local spectral exponents of these scaling laws. These new attributes are related to the local fractality of these signals. We first present some theoretical results and an application to a fractional Brownian motion. The second application concerns a dataset recorded in the MAR203 borehole. We show that clustering of these new pseudo-logs leads to a good resolution between different lithofacies. To cite this article: N. Zaourar et al., C. R. Geoscience 338 (2006).

Using Passive Sensing to Estimate Relative Energy Expenditure for Eldercare Monitoring

PubMed Central

2012-01-01

This paper describes ongoing work in analyzing sensor data logged in the homes of seniors. An estimation of relative energy expenditure is computed using motion density from passive infrared motion sensors mounted in the environment. We introduce a new algorithm for detecting visitors in the home using motion sensor data and a set of fuzzy rules. The visitor algorithm, as well as a previous algorithm for identifying time-away-from-home (TAFH), are used to filter the logged motion sensor data. Thus, the energy expenditure estimate uses data collected only when the resident is home alone. Case studies are included from TigerPlace, an Aging in Place community, to illustrate how the relative energy expenditure estimate can be used to track health conditions over time. PMID:25266777

Quantitative geophysical investigations at the Diamond M field, Scurry County, Texas

NASA Astrophysics Data System (ADS)

Davogustto Cataldo, Oswaldo Ernesto

The Diamond M field over the Horseshoe Atoll reservoir of west Texas has produced oil since 1942. Even with some 210 well penetrations, complex reservoir compartmentalization has justified an ongoing drilling program with three wells drilled within the last three years. Accurate reservoir characterization requires accurate description of the geometry, geological facies, and petrophysical property distribution ranging from core, through log to the seismic scale. The operator has conducted a careful logging and coring process including dipole sonic logs in addition to acquiring a modern 3D vertical phone - vertical vibrator "P-wave" seismic data volume and an equivalent size 2-component by 2-componet "S-wave" seismic data volume. I analyze these data at different scales, integrating them into a whole. I begin with core analysis of the petrophysical properties of the Horseshoe Atoll reservoir. Measuring porosity, permeability, NMR T2 relaxation and velocities (Vp and Vs) as a function of pressure and find that porosity measurements are consistent when measured with different techniques. When upscaled, these measurements are in excellent agreement with properties measured at the log scale. Together, these measurements provide a lithology-porosity template against which I correlate my seismic P- and S-impedance measurements. Careful examination of P- and S-impedances as well as density from prestack inversion of the P-wave survey of the original time migrated gathers showed lower vertical resolution for S-impedance and density. These latter two parameters are controlled by the far-offset data, which suffers from migration stretch. I address this shortcoming by applying a recently developed non-stretch NMO technique which not only improved the bandwidth of the data but also resulted in inversions that better match the S-impedance and density well log data. The operator hypothesized that 2C by 2C S-wave data would better delineate lithology than conventional P-wave seismic data. Although introduced in the mid-1980s, 2C by 2C data are rarely acquired, with most surveys showing less vertical resolution than conventional (and prior to slip-sweep technology more economically acquired) P-wave data. Initial processing by the service company showed a comparable, but lower frequency, image for the "transverse" component, and poor images for the "radial" component. Although the dipole sonic logs did not indicate the presence of significant anisotropy, shear wave splitting is readily observed on the surface seismic stacks. I therefore developed a prestack Alford rotation algorithm that minimizes the cross-talk between components, resulting vertical resolution comparable to the P-wave data, and independent measure of lithology, and also a direct measure of the direction of the principal axes of anisotropy. The direction of azimuthal anisotropy is aligned N45E consistent with the regional maximum horizontal stress axis obtained from the world stress map database. On average, the Cisco Formation appears 10% thicker on the slow shear (S2) volume than on the fast shear (S1 ) volume and between 70% and 100% thicker on the P-wave volume. Cross-plotting cumulative production against the various seismic attributes, I find a strong negative correlation to S-impedance and P-impedance. Zones of low S-impedance and low P-impedance correlate to better producing wells. More quantitative correlation will require the analysis of the role fractures versus porosity contribute to production.

Influence of particle size distribution on nanopowder cold compaction processes

NASA Astrophysics Data System (ADS)

Boltachev, G.; Volkov, N.; Lukyashin, K.; Markov, V.; Chingina, E.

2017-06-01

Nanopowder uniform and uniaxial cold compaction processes are simulated by 2D granular dynamics method. The interaction of particles in addition to wide-known contact laws involves the dispersion forces of attraction and possibility of interparticle solid bridges formation, which have a large importance for nanopowders. Different model systems are investigated: monosized systems with particle diameter of 10, 20 and 30 nm; bidisperse systems with different content of small (diameter is 10 nm) and large (30 nm) particles; polydisperse systems corresponding to the log-normal size distribution law with different width. Non-monotone dependence of compact density on powder content is revealed in bidisperse systems. The deviations of compact density in polydisperse systems from the density of corresponding monosized system are found to be minor, less than 1 per cent.

Comparison of light and x-ray sensitometric responses of double-emulsion films for different processing conditions.

PubMed

Blendl, C; Buhr, E

2001-12-01

The effects of different film processing conditions on light and x-ray sensitometric responses were compared for a variety of double-emulsion x-ray films. The processing conditions were altered by changes of the developer temperature. Three different exposure variants were applied: x-ray sensitometry using two stepped neutral density attenuators between film and screens, simultaneous double-sided light sensitometry, and single-sided light sensitometry. 13 different types of double-emulsion x-ray films were investigated, among them three asymmetric films. In the special case of exposing the asymmetric films with the single-sided light sensitometer, a method was investigated where each side of the film is exposed at different locations and the sum effect is analyzed. From each sensitometric curve shape two parameters, the logarithmic speed (logS) and the average gradient (G), were evaluated. The results of this study can be summarized as follows: (1) Single-sided and double-sided light sensitometers revealed almost equal changes of logS when the processing conditions are altered. Thus, single-sided light sensitometers can serve as a substitute for double-sided light sensitometers provided that suited exposure methods are used and appropriate sensitometric parameters are evaluated. (2) Light sensitometry quantitatively indicated changes of the film processing that affect the x-ray speed. Hence, light sensitometry is a useful method to monitor changes in film processing.

Nondestructive laboratory measurement of geotechnical and geoacoustic properties through intact core-liner

USGS Publications Warehouse

Kayen, R.E.; Edwards, B.D.; Lee, H.J.

1999-01-01

High-resolution automated measurement of the geotechnical and geoacoustic properties of soil at the U.S. Geological Survey (USGS) is performed with a state-of-the-art multi-sensor whole-core logging device. The device takes measurements, directly through intact sample-tube wall, of p-wave acoustic velocity, of soil wet bulk density, and magnetic susceptibility. This paper summarizes our methodology for determining soil-sound speed and wet-bulk density for material encased in an unsplit liner. Our methodology for nondestructive measurement allows for rapid, accurate, and high-resolution (1 cm-spaced) mapping of the mass physical properties of soil prior to sample extrusion.

Novel bayes factors that capture expert uncertainty in prior density specification in genetic association studies.

PubMed

Spencer, Amy V; Cox, Angela; Lin, Wei-Yu; Easton, Douglas F; Michailidou, Kyriaki; Walters, Kevin

2015-05-01

Bayes factors (BFs) are becoming increasingly important tools in genetic association studies, partly because they provide a natural framework for including prior information. The Wakefield BF (WBF) approximation is easy to calculate and assumes a normal prior on the log odds ratio (logOR) with a mean of zero. However, the prior variance (W) must be specified. Because of the potentially high sensitivity of the WBF to the choice of W, we propose several new BF approximations with logOR ∼N(0,W), but allow W to take a probability distribution rather than a fixed value. We provide several prior distributions for W which lead to BFs that can be calculated easily in freely available software packages. These priors allow a wide range of densities for W and provide considerable flexibility. We examine some properties of the priors and BFs and show how to determine the most appropriate prior based on elicited quantiles of the prior odds ratio (OR). We show by simulation that our novel BFs have superior true-positive rates at low false-positive rates compared to those from both P-value and WBF analyses across a range of sample sizes and ORs. We give an example of utilizing our BFs to fine-map the CASP8 region using genotype data on approximately 46,000 breast cancer case and 43,000 healthy control samples from the Collaborative Oncological Gene-environment Study (COGS) Consortium, and compare the single-nucleotide polymorphism ranks to those obtained using WBFs and P-values from univariate logistic regression. © 2015 The Authors. *Genetic Epidemiology published by Wiley Periodicals, Inc.

The SDSS u-band Galaxy Survey: Luminosity functions and evolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baldry, Ivan K.; Glazebrook, K.; Budavari, T.

2005-01-01

We construct and analyze a u-band selected galaxy sample from the SDSS Southern Survey, which covers 275 deg{sup 2}. The sample includes 43223 galaxies with spectroscopic redshifts in the range 0.005 < z < 0.3 and with 14.5 < u < 20.5. The S/N in the u-band Petrosian aperture is improved by coadding multiple epochs of imaging data and by including sky-subtraction corrections. Luminosity functions for the near-UV {sup 0.1}u band ({lambda} {approx} 322 {+-} 26 nm) are determined in redshift slices of width 0.02, which show a highly significant evolution in M* of -0.8 {+-} 0.1 mag between zmore » = 0 and 0.3; with M* - 5 log h{sub 70} = -18.84 {+-} 0.05 (AB mag), log {phi}* = -2.06 {+-} 0.03 (h{sub 70}{sup 3} Mpc{sup -3}) and log {rho}{sub L} = 19.11 {+-} 0.02 (h{sub 70} W Hz{sup -1}Mpc{sup -3}) at z = 0.1. The faint-end slope determined for z < 0.06 is given by {alpha} = -1.05 {+-} 0.08. This is in agreement with recent determinations from GALEX at shorter wavelengths. Comparing our z < 0.3 luminosity density measurements with 0.2 < z < 1.2 from COMBO-17, we find that the 280-nm density evolves as {rho}{sub L} {proportional_to} (1+z){sup {beta}} with {beta} = 2.1 {+-} 0.2; and find no evidence for any change in slope over this redshift range. By comparing with other measurements of cosmic star formation history, we estimate that the effective dust attenuation at 280 nm has increased by 0.8 {+-} 0.3 mag between z = 0 and 1.« less

Warm absorbers in X-rays (WAX), a comprehensive high-resolution grating spectral study of a sample of Seyfert galaxies - I. A global view and frequency of occurrence of warm absorbers.

NASA Astrophysics Data System (ADS)

Laha, Sibasish; Guainazzi, Matteo; Dewangan, Gulab C.; Chakravorty, Susmita; Kembhavi, Ajit K.

2014-07-01

We present results from a homogeneous analysis of the broad-band 0.3-10 keV CCD resolution as well as of the soft X-ray high-resolution grating spectra of a hard X-ray flux-limited sample of 26 Seyfert galaxies observed with XMM-Newton. Our goal is to characterize warm absorbers (WAs) along the line of sight to the active nucleus. We significantly detect WAs in 65 per cent of the sample sources. Our results are consistent with WAs being present in at least half of the Seyfert galaxies in the nearby Universe, in agreement with previous estimates. We find a gap in the distribution of the ionization parameter in the range 0.5 < log ξ < 1.5 which we interpret as a thermally unstable region for WA clouds. This may indicate that the WA flow is probably constituted by a clumpy distribution of discrete clouds rather than a continuous medium. The distribution of the WA column densities for the sources with broad Fe Kα lines are similar to those sources which do not have broadened emission lines. Therefore, the detected broad Fe Kα emission lines are bona fide and not artefacts of ionized absorption in the soft X-rays. The WA parameters show no correlation among themselves, with the exception of the ionization parameter versus column density. The shallow slope of the log ξ versus log vout linear regression (0.12 ± 0.03) is inconsistent with the scaling laws predicted by radiation or magnetohydrodynamic-driven winds. Our results also suggest that WA and ultra fast outflows do not represent extreme manifestation of the same astrophysical system.

Physical properties of sediments from Keathley Canyon and Atwater Valley, JIP Gulf of Mexico gas hydrate drilling program

USGS Publications Warehouse

Winters, W.J.; Dugan, Brandon; Collett, T.S.

2008-01-01

Physical property measurements and consolidation behavior are different between sediments from Atwater Valley and Keathley Canyon in the northern Gulf of Mexico. Void ratio and bulk density of Atwater Valley sediment from a seafloor mound (holes ATM1 and ATM2) show little effective stress (or depth) dependence to 27 meters below seafloor (mbsf), perhaps owing to fluidized transport through the mound itself with subsequent settling onto the seafloor or mound flanks. Off-mound sediments (hole AT13-2) have bulk physical properties that are similar to mound sediments above 27 mbsf, but void ratio and porosity decrease below that depth. Properties of shallow (<50 mbsf) Keathley Canyon sediments (KC151-3) change with increasing effective stress (or depth) compared to Atwater Valley, but vary little below that depth. Organic carbon is present in concentrations between typical near-shore and deep-sea sediments. Organic carbon-to-nitrogen ratios suggest that the organic matter contained in Atwater Valley off-mound and mound sites came from somewhat different sources. The difference in organic carbon-to-nitrogen ratios between Atwater Valley and Keathley Canyon is more pronounced. At Keathley Canyon a more terrigenous source of the organic matter is indicated. Grain sizes are typically silty clay or clay within the two basins reflecting similar transport energy. However, the range in most shallow sediment properties is significantly different between the two basins. Bulk density profiles agree with logging results in Atwater Valley and Keathley Canyon. Agreement between lab-derived and logging-derived properties supports using logging data to constrain bulk physical properties where cores were not collected.

The response of Dendroctonus valens (Coleoptera: Scolytidae) and Temnochila chlorodia (Coleoptera: Trogossitidae) to Ips paraconfusus (Coleoptera: Scolytidae) pheromone components and verbenone

Treesearch

Christopher J. Fettig; Stepehen R. McKelvey; Christopher P. Dabney; Robert R. Borys

2007-01-01

The red turpentine beetle, Dendroctonus valens LeConte, 1860 (Coleoptera: Curculionidae, Scolytinae), is a common bark beetle species found throughout much of North America and China. In 2004, we observed that California fivespined ips, Ips paraconfusus Lanier, 1970 (Coleoptera: Curculionidae, Scolytinae), attack densities in logging debris were inversely related to D...

Two-dimensional finite element heat transfer model of softwood. Part II, Macrostructural effects

Treesearch

Hongmei Gu; John F. Hunt

2006-01-01

A two-dimensional finite element model was used to study the effects of structural features on transient heat transfer in softwood lumber with various orientations. Transient core temperature was modeled for lumber samples “cut” from various locations within a simulated log. The effects of ring orientation, earlywood to latewood (E/L) ratio, and ring density were...

47 CFR 25.253 - Special requirements for ancillary terrestrial components operating in the 1626.5-1660.5 MHz/1525...

Code of Federal Regulations, 2010 CFR

2010-10-01

...-made structures) of 18.9-10*log(number of carriers) dBW/200 kHz, per sector, for each carrier in the... video bandwidth shall be used to measure wideband EIRP density for purposes of this rule, and narrowband... resolution bandwidth of one megahertz or equivalent and no less video bandwidth shall be used to measure...

47 CFR 25.253 - Special requirements for ancillary terrestrial components operating in the 1626.5-1660.5 MHz/1525...

Code of Federal Regulations, 2011 CFR

2011-10-01

...-made structures) of 18.9-10*log(number of carriers) dBW/200 kHz, per sector, for each carrier in the... video bandwidth shall be used to measure wideband EIRP density for purposes of this rule, and narrowband... resolution bandwidth of one megahertz or equivalent and no less video bandwidth shall be used to measure...

47 CFR 25.253 - Special requirements for ancillary terrestrial components operating in the 1626.5-1660.5 MHz/1525...

Code of Federal Regulations, 2013 CFR

2013-10-01

...-made structures) of 18.9-10*log(number of carriers) dBW/200 kHz, per sector, for each carrier in the... video bandwidth shall be used to measure wideband EIRP density for purposes of this rule, and narrowband... resolution bandwidth of one megahertz or equivalent and no less video bandwidth shall be used to measure...

47 CFR 25.253 - Special requirements for ancillary terrestrial components operating in the 1626.5-1660.5 MHz/1525...

Code of Federal Regulations, 2014 CFR

2014-10-01

...-made structures) of 18.9-10*log(number of carriers) dBW/200 kHz, per sector, for each carrier in the... video bandwidth shall be used to measure wideband EIRP density for purposes of this rule, and narrowband... resolution bandwidth of one megahertz or equivalent and no less video bandwidth shall be used to measure...

47 CFR 25.253 - Special requirements for ancillary terrestrial components operating in the 1626.5-1660.5 MHz/1525...

Code of Federal Regulations, 2012 CFR

2012-10-01

...-made structures) of 18.9-10*log(number of carriers) dBW/200 kHz, per sector, for each carrier in the... video bandwidth shall be used to measure wideband EIRP density for purposes of this rule, and narrowband... resolution bandwidth of one megahertz or equivalent and no less video bandwidth shall be used to measure...

Population densities of northern Saw-whet Owls (Aegolius acadicus) in degraded boreal forests of the southern Appalachians

Treesearch

Timothy C. Milling; Matthew P. Rowe; Bennie L. Cockerel; Timothy A. Dellinger; Johnny B. Gailes; Christopher E. Hill

1997-01-01

A disjunct population of the Northern Saw-whet Owl (Aegolius acadicus) breeds in the montane spruce-fir forests of the southern Appalachian Mountains. These forests are listed as the second most endangered ecosystem in the United States, having suffered from logging and massive fir die-off from the exotic balsam woolly adelgid. We used audio...

Fuel mass and stand structure after post-fire logging of a severely burned ponderosa pine forest in northeastern Oregon.

Treesearch

J.D. McIver; R. Ottmar

2006-01-01

Stand structure and downed woody fuel mass were measured in four replicate units for each of three treatments (unlogged control, commercial harvest, and fuel reduction harvest) following the 1996 Summit Wildfire in northeastern Oregon. Commercial and fuel-reduction harvest resulted in a significant decrease in tree density and tree basal areas. The total downed woody...

Mature and old-growth riparian forests: structure, dynamics, and effects on Adirondack stream habitats.

PubMed

Keeton, William S; Kraft, Clifford E; Warren, Dana R

2007-04-01

Riparian forests regulate linkages between terrestrial and aquatic ecosystems, yet relationships among riparian forest development, stand structure, and stream habitats are poorly understood in many temperate deciduous forest systems. Our research has (1) described structural attributes associated with old-growth riparian forests and (2) assessed linkages between these characteristics and in-stream habitat structure. The 19 study sites were located along predominantly first- and second-order streams in northern hardwood-conifer forests in the Adirondack Mountains of New York (U.S.A.). Sites were classified as mature forest (6 sites), mature with remnant old-growth trees (3 sites), and old-growth (10 sites). Forest-structure attributes were measured over stream channels and at varying distances from each bank. In-stream habitat features such as large woody debris (LWD), pools, and boulders were measured in each stream reach. Forest structure was examined in relation to stand age using multivariate techniques, ANOVA, and linear regression. We investigated linkages between forest structure and stream characteristics using similar methods, preceded by information-theoretic modeling (AIC). Old-growth riparian forest structure is more complex than that found in mature forests and exhibits significantly greater accumulations of aboveground tree biomass, both living and dead. In-stream LWD volumes were significantly (alpha = 0.05) greater at old-growth sites (200 m3/ha) compared to mature sites (34 m3/ha) and were strongly related to the basal area of adjacent forests. In-stream large-log densities correlated strongly with debris-dam densities. AIC models that included large-log density, debris-dam density, boulder density, and bankfull width had the most support for predicting pool density. There were higher proportions of LWD-formed pools relative to boulder-formed pools at old-growth sites as compared to mature sites. Old-growth riparian forests provide in-stream habitat features that have not been widely recognized in eastern North America, representing a potential benefit from late-successional riparian forest management and conservation. Riparian management practices (including buffer delineation and restorative silvicultural approaches) that emphasize development and maintenance of late-successional characteristics are recommended where the associated in-stream effects are desired.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kulkarni, Varsha P.; Som, Debopam; Morrison, Sean

We report Keck/Echellette Spectrograph and Imager and Very Large Telescope/Ultraviolet-Visual Echelle Spectrograph observations of three super-damped Lyα quasar absorbers with H i column densities log N{sub H} {sub i} ≥ 21.7 at redshifts 2 ≲ z ≲ 2.5. All three absorbers show similar metallicities (∼−1.3 to −1.5 dex), and dust depletion of Fe, Ni, and Mn. Two of the absorbers show supersolar [S/Zn] and [Si/Zn]. We combine our results with those for other damped Lyα a absorbers (DLAs) to examine trends between N{sub H} {sub i}, metallicity, and dust depletion. A larger fraction of the super-DLAs lie close to ormore » above the line [X/H] = 20.59 − log N{sub H} {sub i} in the metallicity versus N{sub H} {sub i} plot, compared to the less gas-rich DLAs, suggesting that super-DLAs are more likely to be rich in molecules. Unfortunately, our data for Q0230−0334 and Q0743+1421 do not cover H{sub 2} absorption lines. For Q1418+0718, some H{sub 2} lines are covered, but not detected. CO is not detected in any of our absorbers. For DLAs with log N{sub H} {sub i} < 21.7, we confirm strong correlation between metallicity and Fe depletion, and find a correlation between metallicity and Si depletion. For super-DLAs, these correlations are weaker or absent. The absorbers toward Q0230−0334 and Q1418+0718 show potential detections of weak Lyα emission, implying star formation rates of ∼1.6 and ∼0.7 M{sub ⊙} yr{sup −1}, respectively (ignoring dust extinction). Upper limits on the electron densities from C ii*/C ii or Si ii*/Si ii are low, but are higher than the median values in less gas-rich DLAs. Finally, systems with log N{sub H} {sub i} > 21.7 may have somewhat narrower velocity dispersions Δv{sub 90} than the less gas-rich DLAs, and may arise in cooler and/or less turbulent gas.« less

Logging impacts on forest structure and seedling dynamics in a Prioria copaifera (Fabaceae) dominated tropical rain forest (Talamanca, Costa Rica).

PubMed

Valverde-Barrantes, Oscar J; Rocha, Oscar J

2014-03-01

The factors that determine the existence of tropical forests dominated by a single species (monodominated forests) have been the subject of debate for a long time. It has been hypothesized that the low frequency of disturbances in monodominated forests and the tolerance to shade of the monodominant species are two important factors explaining the prolonged dominance of a single species. We determined the role of these two factors by examining the effects of logging activities on the floristic composition and seedling dynamics in a Prioria copaifera dominated forest in Southeastern Costa Rica. We determined the floristic composition for trees > or = 2.5cm DBH and the associated recruitment, survival and mortality of tree canopy seedlings in two sites logged two (L-02) and 12 years (L-12) prior to sampling and an unlogged forest (ULF). Our results showed that L-02 stands had lower species richness (25 species) than the L-12 and ULF stands (49 and 46 species, respectively). As expected, we found significant logging effects on the canopy structure of the altered forests, particularly when comparing the L-02 and the ULF stands. Seedling density was higher in ULF (0.96 seedlings/ m2) than in the L-02 and L-12 stands (0.322 and 0.466 seedlings/m2, respectively). However, seedling mortality was higher in the ULF stands (54%) than in the L-02 (26%) and L-12 (15%) stands. P. macroloba in L-02 was the only species with abundant regeneration under P. copaifera in L-02 stand, where it accounted for 35% of the seedlings. Despite the reduction in seedling abundance observed after logging, P. copaifera seems to maintain large seedling populations in these forests, suggesting that this species maintains its dominance after logging disturbances. Our findings challenge the hypothesis that the regeneration of monodominant species is not likely to occur under heavily disturbed canopy conditions.

Three-dimensional trend mapping from wire-line logs

USGS Publications Warehouse

Doveton, J.H.; Ke-an, Z.

1985-01-01

Mapping of lithofacies and porosities of stratigraphic units is complicated because these properties vary in three dimensions. The method of moments was proposed by Krumbein and Libby (1957) as a technique to aid in resolving this problem. Moments are easily computed from wireline logs and are simple statistics which summarize vertical variation in a log trace. Combinations of moment maps have proved useful in understanding vertical and lateral changes in lithology of sedimentary rock units. Although moments have meaning both as statistical descriptors and as mechanical properties, they also define polynomial curves which approximate lithologic changes as a function of depth. These polynomials can be fitted by least-squares methods, partitioning major trends in rock properties from finescale fluctuations. Analysis of variance yields the degree of fit of any polynomial and measures the proportion of vertical variability expressed by any moment or combination of moments. In addition, polynomial curves can be differentiated to determine depths at which pronounced expressions of facies occur and to determine the locations of boundaries between major lithologic subdivisions. Moments can be estimated at any location in an area by interpolating from log moments at control wells. A matrix algebra operation then converts moment estimates to coefficients of a polynomial function which describes a continuous curve of lithologic variation with depth. If this procedure is applied to a grid of geographic locations, the result is a model of variability in three dimensions. Resolution of the model is determined largely by number of moments used in its generation. The method is illustrated with an analysis of lithofacies in the Simpson Group of south-central Kansas; the three-dimensional model is shown as cross sections and slice maps. In this study, the gamma-ray log is used as a measure of shaliness of the unit. However, the method is general and can be applied, for example, to suites of neutron, density, or sonic logs to produce three-dimensional models of porosity in reservoir rocks. ?? 1985 Plenum Publishing Corporation.

Rapid photosynthetic acclimation of Shorea johorensis seedlings after logging disturbance in Central Kalimantan.

PubMed

Clearwater, M J; Susilawaty, R; Effendi, R; van Gardingen, P R

1999-12-01

This study examined the photosynthetic acclimation of pre-existing Shorea johorensis (Dipterocarpaceae) seedlings to the change in conditions that occurs at the time of logging in Central Kalimantan, Indonesia. The hypothesis was that the seedlings would be unable to acclimate beyond partially open conditions after canopy disturbance caused by logging, therefore limiting the potential for regeneration in the most open areas. Bleaching and reductions in the predawn ratio of variable to maximum fluorescence (F v /F m ) indicated chronic photoinhibition and damage to the previously shade-adapted leaves of seedlings in an area logged 2 weeks earlier. The majority of seedlings in partially open and open environments of an area logged 3 months earlier were already growing fast. Leaves that had developed in the new environment showed only small reductions in predawn F v /F m and large increases in the light saturated rate of photosynthesis (A max ) per unit area when compared to shaded seedlings. Leaves in the most open environments had higher but more variable nitrogen concentrations, A max per unit area and A max per unit mass when compared to seedlings in partially open environments. Increases in dark respiration were disproportionately large compared to increases in A max , and may have been the result of increased investment in photoprotective mechanisms. The response of stomatal conductance to the vapour pressure deficit and leaf temperature was examined, but it suggested only a 10% reduction in daily leaf level carbon gain in open environments. The ratio of leaf area to fine root mass was highest in shade-suppressed and newly exposed seedlings, suggesting a potential hydraulic limitation to transpiration during acclimation. However, rainfall during this period was high and leaf water potentials did not differ between disturbed and undisturbed environments. S. johorensis seedlings were capable of significant acclimation to conditions more extreme than partial canopy opening. Low seedling density after logging during the wet season cannot be explained by a limited potential for photosynthetic acclimation.

Reduction of spiked porcine circovirus during the manufacture of a Vero cell-derived vaccine.

PubMed

Lackner, Cornelia; Leydold, Sandra M; Modrof, Jens; Farcet, Maria R; Grillberger, Leopold; Schäfer, Birgit; Anderle, Heinz; Kreil, Thomas R

2014-04-11

Porcine circovirus-1 (PCV1) was recently identified as a contaminant in live Rotavirus vaccines, which was likely caused by contaminated porcine trypsin. The event triggered the development of new regulatory guidance on the use of porcine trypsin which shall ensure that cell lines and porcine trypsin in use are free from PCV1. In addition, manufacturing processes of biologicals other than live vaccines include virus clearance steps that may prevent and mitigate any potential virus contamination of product. In this work, artificial spiking of down-scaled models for the manufacturing process of an inactivated pandemic influenza virus vaccine were used to investigate inactivation of PCV1 and the physico-chemically related porcine parvovirus (PPV) by formalin and ultraviolet-C (UV-C) treatment as well as removal by the purification step sucrose gradient ultracentrifugation. A PCV1 infectivity assay, using a real-time PCR infectivity readout was established. The formalin treatment (0.05% for 48h) showed substantial inactivation for both PCV1 and PPV with reduction factors of 3.0log10 and 6.8log10, respectively, whereas UV-C treatment resulted in complete PPV (≥5.9log10) inactivation already at a dose of 13mJ/cm but merely 1.7log10 at 24mJ/cm(2) for PCV1. The UV-C inactivation results with PPV were confirmed using minute virus of mice (MVM), indicating that parvoviruses are far more sensitive to UV-C than PCV1. The sucrose density gradient ultracentrifugation also contributed to PCV1 clearance with a reduction factor of 2log10. The low pH treatment during the production of procine trypsin was investigated and showed effective inactivation for both PCV1 (4.5log10) and PPV (6.4log10). In conclusion, PCV1 in general appears to be more resistant to virus inactivation than PPV. Still, the inactivated pandemic influenza vaccine manufacturing process provides for robust virus reduction, in addition to the already implemented testing for PCV1 to avoid any contaminations. Copyright © 2014 Elsevier Ltd. All rights reserved.

The Sabah Biodiversity Experiment: a long-term test of the role of tree diversity in restoring tropical forest structure and functioning

PubMed Central

Hector, Andy; Philipson, Christopher; Saner, Philippe; Chamagne, Juliette; Dzulkifli, Dzaeman; O'Brien, Michael; Snaddon, Jake L.; Ulok, Philip; Weilenmann, Maja; Reynolds, Glen; Godfray, H. Charles J.

2011-01-01

Relatively, little is known about the relationship between biodiversity and ecosystem functioning in forests, especially in the tropics. We describe the Sabah Biodiversity Experiment: a large-scale, long-term field study on the island of Borneo. The project aims at understanding the relationship between tree species diversity and the functioning of lowland dipterocarp rainforest during restoration following selective logging. The experiment is planned to run for several decades (from seed to adult tree), so here we focus on introducing the project and its experimental design and on assessing initial conditions and the potential for restoration of the structure and functioning of the study system, the Malua Forest Reserve. We estimate residual impacts 22 years after selective logging by comparison with an appropriate neighbouring area of primary forest in Danum Valley of similar conditions. There was no difference in the alpha or beta species diversity of transect plots in the two forest types, probably owing to the selective nature of the logging and potential effects of competitive release. However, despite equal total stem density, forest structure differed as expected with a deficit of large trees and a surfeit of saplings in selectively logged areas. These impacts on structure have the potential to influence ecosystem functioning. In particular, above-ground biomass and carbon pools in selectively logged areas were only 60 per cent of those in the primary forest even after 22 years of recovery. Our results establish the initial conditions for the Sabah Biodiversity Experiment and confirm the potential to accelerate restoration by using enrichment planting of dipterocarps to overcome recruitment limitation. What role dipterocarp diversity plays in restoration only will become clear with long-term results. PMID:22006970

Wide-range high-resolution transmission electron microscopy reveals morphological and distributional changes of endomembrane compartments during log to stationary transition of growth phase in tobacco BY-2 cells.

PubMed

Toyooka, Kiminori; Sato, Mayuko; Kutsuna, Natsumaro; Higaki, Takumi; Sawaki, Fumie; Wakazaki, Mayumi; Goto, Yumi; Hasezawa, Seiichiro; Nagata, Noriko; Matsuoka, Ken

2014-09-01

Rapid growth of plant cells by cell division and expansion requires an endomembrane trafficking system. The endomembrane compartments, such as the Golgi stacks, endosome and vesicles, are important in the synthesis and trafficking of cell wall materials during cell elongation. However, changes in the morphology, distribution and number of these compartments during the different stages of cell proliferation and differentiation have not yet been clarified. In this study, we examined these changes at the ultrastructural level in tobacco Bright yellow 2 (BY-2) cells during the log and stationary phases of growth. We analyzed images of the BY-2 cells prepared by the high-pressure freezing/freeze substitution technique with the aid of an auto-acquisition transmission electron microscope system. We quantified the distribution of secretory and endosomal compartments in longitudinal sections of whole cells by using wide-range gigapixel-class images obtained by merging thousands of transmission electron micrographs. During the log phase, all Golgi stacks were composed of several thick cisternae. Approximately 20 vesicle clusters (VCs), including the trans-Golgi network and secretory vesicle cluster, were observed throughout the cell. In the stationary-phase cells, Golgi stacks were thin with small cisternae, and only a few VCs were observed. Nearly the same number of multivesicular body and small high-density vesicles were observed in both the stationary and log phases. Results from electron microscopy and live fluorescence imaging indicate that the morphology and distribution of secretory-related compartments dramatically change when cells transition from log to stationary phases of growth. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

The Sabah Biodiversity Experiment: a long-term test of the role of tree diversity in restoring tropical forest structure and functioning.

PubMed

Hector, Andy; Philipson, Christopher; Saner, Philippe; Chamagne, Juliette; Dzulkifli, Dzaeman; O'Brien, Michael; Snaddon, Jake L; Ulok, Philip; Weilenmann, Maja; Reynolds, Glen; Godfray, H Charles J

2011-11-27

Relatively, little is known about the relationship between biodiversity and ecosystem functioning in forests, especially in the tropics. We describe the Sabah Biodiversity Experiment: a large-scale, long-term field study on the island of Borneo. The project aims at understanding the relationship between tree species diversity and the functioning of lowland dipterocarp rainforest during restoration following selective logging. The experiment is planned to run for several decades (from seed to adult tree), so here we focus on introducing the project and its experimental design and on assessing initial conditions and the potential for restoration of the structure and functioning of the study system, the Malua Forest Reserve. We estimate residual impacts 22 years after selective logging by comparison with an appropriate neighbouring area of primary forest in Danum Valley of similar conditions. There was no difference in the alpha or beta species diversity of transect plots in the two forest types, probably owing to the selective nature of the logging and potential effects of competitive release. However, despite equal total stem density, forest structure differed as expected with a deficit of large trees and a surfeit of saplings in selectively logged areas. These impacts on structure have the potential to influence ecosystem functioning. In particular, above-ground biomass and carbon pools in selectively logged areas were only 60 per cent of those in the primary forest even after 22 years of recovery. Our results establish the initial conditions for the Sabah Biodiversity Experiment and confirm the potential to accelerate restoration by using enrichment planting of dipterocarps to overcome recruitment limitation. What role dipterocarp diversity plays in restoration only will become clear with long-term results.

Method for determining formation quality factor from well log data and its application to seismic reservoir characterization

DOEpatents

Walls, Joel; Taner, M. Turhan; Dvorkin, Jack

2006-08-08

A method for seismic characterization of subsurface Earth formations includes determining at least one of compressional velocity and shear velocity, and determining reservoir parameters of subsurface Earth formations, at least including density, from data obtained from a wellbore penetrating the formations. A quality factor for the subsurface formations is calculated from the velocity, the density and the water saturation. A synthetic seismogram is calculated from the calculated quality factor and from the velocity and density. The synthetic seismogram is compared to a seismic survey made in the vicinity of the wellbore. At least one parameter is adjusted. The synthetic seismogram is recalculated using the adjusted parameter, and the adjusting, recalculating and comparing are repeated until a difference between the synthetic seismogram and the seismic survey falls below a selected threshold.

Stochastic Modeling Approach to the Incubation Time of Prionic Diseases

NASA Astrophysics Data System (ADS)

Ferreira, A. S.; da Silva, M. A.; Cressoni, J. C.

2003-05-01

Transmissible spongiform encephalopathies are neurodegenerative diseases for which prions are the attributed pathogenic agents. A widely accepted theory assumes that prion replication is due to a direct interaction between the pathologic (PrPSc) form and the host-encoded (PrPC) conformation, in a kind of autocatalytic process. Here we show that the overall features of the incubation time of prion diseases are readily obtained if the prion reaction is described by a simple mean-field model. An analytical expression for the incubation time distribution then follows by associating the rate constant to a stochastic variable log normally distributed. The incubation time distribution is then also shown to be log normal and fits the observed BSE (bovine spongiform encephalopathy) data very well. Computer simulation results also yield the correct BSE incubation time distribution at low PrPC densities.

Criticality and Phase Transition in Stock-Price Fluctuations

NASA Astrophysics Data System (ADS)

Kiyono, Ken; Struzik, Zbigniew R.; Yamamoto, Yoshiharu

2006-02-01

We analyze the behavior of the U.S. S&P 500 index from 1984 to 1995, and characterize the non-Gaussian probability density functions (PDF) of the log returns. The temporal dependence of fat tails in the PDF of a ten-minute log return shows a gradual, systematic increase in the probability of the appearance of large increments on approaching black Monday in October 1987, reminiscent of parameter tuning towards criticality. On the occurrence of the black Monday crash, this culminates in an abrupt transition of the scale dependence of the non-Gaussian PDF towards scale-invariance characteristic of critical behavior. These facts suggest the need for revisiting the turbulent cascade paradigm recently proposed for modeling the underlying dynamics of the financial index, to account for time varying—phase transitionlike and scale invariant-critical-like behavior.

HerMES: The contribution to the cosmic infrared background from galaxies selected by mass and redshift

DOE Office of Scientific and Technical Information (OSTI.GOV)

Viero, M. P.; Moncelsi, L.; Bock, J.

2013-12-10

We quantify the fraction of the cosmic infrared background (CIB) that originates from galaxies identified in the UV/optical/near-infrared by stacking 81,250 (∼35.7 arcmin{sup –2}) K-selected sources (K {sub AB} < 24.0) split according to their rest-frame U – V versus V – J colors into 72,216 star-forming and 9034 quiescent galaxies, on maps from Spitzer/MIPS (24 μm), Herschel/PACS (100, 160 μm), Herschel/SPIRE (250, 350, 500 μm), and AzTEC (1100 μm). The fraction of the CIB resolved by our catalog is (69% ± 15%) at 24 μm, (78% ± 17%) at 70 μm, (58% ± 13%) at 100 μm, (78% ±more » 18%) at 160 μm, (80% ± 17%) at 250 μm, (69% ± 14%) at 350 μm, (65% ± 12%) at 500 μm, and (45% ± 8%) at 1100 μm. Of that total, about 95% originates from star-forming galaxies, while the remaining 5% is from apparently quiescent galaxies. The CIB at λ ≲ 200 μm appears to be sourced predominantly from galaxies at z ≲ 1, while at λ ≳ 200 μm the bulk originates from 1 ≲ z ≲ 2. Galaxies with stellar masses log(M/M {sub ☉}) = 9.5-11 are responsible for the majority of the CIB, with those in the log(M/M {sub ☉}) = 9.5-10 bin contributing mostly at λ < 250 μm, and those in the log(M/M {sub ☉}) = 10-11 bin dominating at λ > 350 μm. The contribution from galaxies in the log(M/M {sub ☉}) = 9.0-9.5 (lowest) and log(M/M {sub ☉}) = 11.0-12.0 (highest) stellar-mass bins contribute the least—both of order 5%—although the highest stellar-mass bin is a significant contributor to the luminosity density at z ≳ 2. The luminosities of the galaxies responsible for the CIB shifts from combinations of 'normal' and luminous infrared galaxies (LIRGs) at λ ≲ 160 μm, to LIRGs at 160 ≲ λ ≲ 500 μm, to finally LIRGs and ultra-luminous infrared galaxies at λ ≳ 500 μm. Stacking analyses were performed using SIMSTACK, a novel algorithm designed to account for possible biases in the stacked flux density due to clustering. It is made available to the public at www.astro.caltech.edu/∼viero/viero{sub h}omepage/toolbox.html.« less

A combined HST and XMM-Newton campaign for the magnetic O9.7 V star HD 54879. Constraining the weak-wind problem of massive stars

NASA Astrophysics Data System (ADS)

Shenar, T.; Oskinova, L. M.; Järvinen, S. P.; Luckas, P.; Hainich, R.; Todt, H.; Hubrig, S.; Sander, A. A. C.; Ilyin, I.; Hamann, W.-R.

2017-10-01

Context. HD 54879 (O9.7 V) is one of a dozen O-stars for which an organized atmospheric magnetic field has been detected. Despite their importance, little is known about the winds and evolution of magnetized massive stars. Aims: To gain insights into the interplay between atmospheres, winds, and magnetic fields of massive stars, we acquired UV and X-ray data of HD 54879 using the Hubble Space Telescope and the XMM-Newton satellite. In addition, 35 optical amateur spectra were secured to study the variability of HD 54879. Methods: A multiwavelength (X-ray to optical) spectral analysis is performed using the Potsdam Wolf-Rayet (PoWR) model atmosphere code and the xspec software. Results: The photospheric parameters (T∗ = 30.5 kK, log g = 4.0 [cm s-2], log L = 4.45 [L⊙]) are typical for an O9.7 V star. The microturbulent, macroturbulent, and projected rotational velocities are lower than previously suggested (ξph,vmac,vsini ≤ 4 km s-1). An initial mass of 16 M⊙ and an age of 5 Myr are inferred from evolutionary tracks. We derive a mean X-ray emitting temperature of log TX = 6.7 [K] and an X-ray luminosity of LX = 1 × 1032 erg s-1. Short- and long-scale variability is seen in the Hα line, but only a very long period of P ≈ 5 yr could be estimated. Assessing the circumstellar density of HD 54879 using UV spectra, we can roughly estimate the mass-loss rate HD 54879 would have in the absence of a magnetic field as log ṀB = 0 ≈ -9.0 [M⊙ yr-1]. The magnetic field traps the stellar wind up to the Alfvén radius rA ≳ 12 R∗, implying that its true mass-loss rate is log Ṁ ≲ -10.2 [M⊙ yr-1]. Hence, density enhancements around magnetic stars can be exploited to estimate mass-loss rates of non-magnetic stars of similar spectral types, essential for resolving the weak wind problem. Conclusions: Our study confirms that strongly magnetized stars lose little or no mass, and supplies important constraints on the weak-wind problem of massive main sequence stars. Based on observations obtained with XMM-Newton, an ESA science mission with instruments and contributions directly funded by ESA Member States and NASA.

HerMES: The Contribution to the Cosmic Infrared Background from Galaxies Selected by Mass and Redshift

NASA Astrophysics Data System (ADS)

Viero, M. P.; Moncelsi, L.; Quadri, R. F.; Arumugam, V.; Assef, R. J.; Béthermin, M.; Bock, J.; Bridge, C.; Casey, C. M.; Conley, A.; Cooray, A.; Farrah, D.; Glenn, J.; Heinis, S.; Ibar, E.; Ikarashi, S.; Ivison, R. J.; Kohno, K.; Marsden, G.; Oliver, S. J.; Roseboom, I. G.; Schulz, B.; Scott, D.; Serra, P.; Vaccari, M.; Vieira, J. D.; Wang, L.; Wardlow, J.; Wilson, G. W.; Yun, M. S.; Zemcov, M.

2013-12-01

We quantify the fraction of the cosmic infrared background (CIB) that originates from galaxies identified in the UV/optical/near-infrared by stacking 81,250 (~35.7 arcmin-2) K-selected sources (K AB < 24.0) split according to their rest-frame U - V versus V - J colors into 72,216 star-forming and 9034 quiescent galaxies, on maps from Spitzer/MIPS (24 μm), Herschel/PACS (100, 160 μm), Herschel/SPIRE (250, 350, 500 μm), and AzTEC (1100 μm). The fraction of the CIB resolved by our catalog is (69% ± 15%) at 24 μm, (78% ± 17%) at 70 μm, (58% ± 13%) at 100 μm, (78% ± 18%) at 160 μm, (80% ± 17%) at 250 μm, (69% ± 14%) at 350 μm, (65% ± 12%) at 500 μm, and (45% ± 8%) at 1100 μm. Of that total, about 95% originates from star-forming galaxies, while the remaining 5% is from apparently quiescent galaxies. The CIB at λ <~ 200 μm appears to be sourced predominantly from galaxies at z <~ 1, while at λ >~ 200 μm the bulk originates from 1 <~ z <~ 2. Galaxies with stellar masses log(M/M ⊙) = 9.5-11 are responsible for the majority of the CIB, with those in the log(M/M ⊙) = 9.5-10 bin contributing mostly at λ < 250 μm, and those in the log(M/M ⊙) = 10-11 bin dominating at λ > 350 μm. The contribution from galaxies in the log(M/M ⊙) = 9.0-9.5 (lowest) and log(M/M ⊙) = 11.0-12.0 (highest) stellar-mass bins contribute the least—both of order 5%—although the highest stellar-mass bin is a significant contributor to the luminosity density at z >~ 2. The luminosities of the galaxies responsible for the CIB shifts from combinations of "normal" and luminous infrared galaxies (LIRGs) at λ <~ 160 μm, to LIRGs at 160 <~ λ <~ 500 μm, to finally LIRGs and ultra-luminous infrared galaxies at λ >~ 500 μm. Stacking analyses were performed using SIMSTACK, a novel algorithm designed to account for possible biases in the stacked flux density due to clustering. It is made available to the public at www.astro.caltech.edu/~viero/viero_homepage/toolbox.html. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Construction Foundation Report, Grand River, Bowman-Haley Project, North Dakota. Volume 1. Text, Drawings, Photos.

DTIC Science & Technology

1985-05-01

tamping rollers. Final compaction was by rubber -t ired rollers. Compaction was to 95% of maximum density. Time between placing the 6" layers and...taree ue go dscribe*he:. 0 IoldNYeRAEL Boreast ol bsnc of eater readngs in the Iiraphic Log ’G I CAYI CQ 5A esL.- ADS@ * nbr ; i cneeeiItt be oetrued O

Attack Densities of Tomicus piniperda and Ips pini (Coleoptera: Scolytidae) on Scotch Pine Logs in Michigan in Relation to Felling Date1

Treesearch

Robert A. Haack; Robert K. Lawrence

1995-01-01

Established populations of an exotic bark beetle, the larger pine shoot beetle [Tomicus piniperda (L.)], were first reported in Ohio in July 1992. Subsequent surveys through July 1994 have found T. piniperda in six states in the United States and in one Canadian Province in the Great Lakes region. One-meter-long trunk sections were...

Predicting outgrowth and inactivation of Clostridium perfringens in meat products during low temperature long time heat treatment.

PubMed

Duan, Zhi; Hansen, Terese Holst; Hansen, Tina Beck; Dalgaard, Paw; Knøchel, Susanne

2016-08-02

With low temperature long time (LTLT) cooking it can take hours for meat to reach a final core temperature above 53°C and germination followed by growth of Clostridium perfringens is a concern. Available and new growth data in meats including 154 lag times (tlag), 224 maximum specific growth rates (μmax) and 25 maximum population densities (Nmax) were used to developed a model to predict growth of C. perfringens during the coming-up time of LTLT cooking. New data were generate in 26 challenge tests with chicken (pH6.8) and pork (pH5.6) at two different slowly increasing temperature (SIT) profiles (10°C to 53°C) followed by 53°C in up to 30h in total. Three inoculum types were studied including vegetative cells, non-heated spores and heat activated (75°C, 20min) spores of C. perfringens strain 790-94. Concentrations of vegetative cells in chicken increased 2 to 3logCFU/g during the SIT profiles. Similar results were found for non-heated and heated spores in chicken, whereas in pork C. perfringens 790-94 increased less than 1logCFU/g. At 53°C C. perfringens 790-94 was log-linearly inactivated. Observed and predicted concentrations of C. perfringens, at the time when 53°C (log(N53)) was reached, were used to evaluate the new growth model and three available predictive models previously published for C. perfringens growth during cooling rather than during SIT profiles. Model performance was evaluated by using mean deviation (MD), mean absolute deviation (MAD) and the acceptable simulation zone (ASZ) approach with a zone of ±0.5logCFU/g. The new model showed best performance with MD=0.27logCFU/g, MAD=0.66logCFU/g and ASZ=67%. The two growth models that performed best, were used together with a log-linear inactivation model and D53-values from the present study to simulate the behaviour of C. perfringens under the fast and slow SIT profiles investigated in the present study. Observed and predicted concentrations were compared using a new fail-safe acceptable zone (FSAZ) method. FSAZ was defined as the predicted concentration of C. perfringens plus 0.5logCFU/g. If at least 85% of the observed log-counts were below the FSAZ, the model was considered fail-safe. The two models showed similar performance but none of them performed satisfactorily for all conditions. It is recommended to use the models without a lag phase until more precise lag time models become available. Copyright © 2016 Elsevier B.V. All rights reserved.

Compaction of forest soil by logging machinery favours occurrence of prokaryotes.

PubMed

Schnurr-Pütz, Silvia; Bååth, Erland; Guggenberger, Georg; Drake, Harold L; Küsel, Kirsten

2006-12-01

Soil compaction caused by passage of logging machinery reduces the soil air capacity. Changed abiotic factors might induce a change in the soil microbial community and favour organisms capable of tolerating anoxic conditions. The goals of this study were to resolve differences between soil microbial communities obtained from wheel-tracks (i.e. compacted) and their adjacent undisturbed sites, and to evaluate differences in potential anaerobic microbial activities of these contrasting soils. Soil samples obtained from compacted soil had a greater bulk density and a higher pH than uncompacted soil. Analyses of phospholipid fatty acids demonstrated that the eukaryotic/prokaryotic ratio in compacted soils was lower than that of uncompacted soils, suggesting that fungi were not favoured by the in situ conditions produced by compaction. Indeed, most-probable-number (MPN) estimates of nitrous oxide-producing denitrifiers, acetate- and lactate-utilizing iron and sulfate reducers, and methanogens were higher in compacted than in uncompacted soils obtained from one site that had large differences in bulk density. Compacted soils from this site yielded higher iron-reducing, sulfate-reducing and methanogenic potentials than did uncompacted soils. MPN estimates of H2-utilizing acetogens in compacted and uncompacted soils were similar. These results indicate that compaction of forest soil alters the structure and function of the soil microbial community and favours occurrence of prokaryotes.

Analyzing coastal environments by means of functional data analysis

NASA Astrophysics Data System (ADS)

Sierra, Carlos; Flor-Blanco, Germán; Ordoñez, Celestino; Flor, Germán; Gallego, José R.

2017-07-01

Here we used Functional Data Analysis (FDA) to examine particle-size distributions (PSDs) in a beach/shallow marine sedimentary environment in Gijón Bay (NW Spain). The work involved both Functional Principal Components Analysis (FPCA) and Functional Cluster Analysis (FCA). The grainsize of the sand samples was characterized by means of laser dispersion spectroscopy. Within this framework, FPCA was used as a dimension reduction technique to explore and uncover patterns in grain-size frequency curves. This procedure proved useful to describe variability in the structure of the data set. Moreover, an alternative approach, FCA, was applied to identify clusters and to interpret their spatial distribution. Results obtained with this latter technique were compared with those obtained by means of two vector approaches that combine PCA with CA (Cluster Analysis). The first method, the point density function (PDF), was employed after adapting a log-normal distribution to each PSD and resuming each of the density functions by its mean, sorting, skewness and kurtosis. The second applied a centered-log-ratio (clr) to the original data. PCA was then applied to the transformed data, and finally CA to the retained principal component scores. The study revealed functional data analysis, specifically FPCA and FCA, as a suitable alternative with considerable advantages over traditional vector analysis techniques in sedimentary geology studies.

A Mathematical Model to Predict Endothelial Cell Density Following Penetrating Keratoplasty With Selective Dropout From Graft Failure

PubMed Central

Riddlesworth, Tonya D.; Kollman, Craig; Lass, Jonathan H.; Patel, Sanjay V.; Stulting, R. Doyle; Benetz, Beth Ann; Gal, Robin L.; Beck, Roy W.

2014-01-01

Purpose. We constructed several mathematical models that predict endothelial cell density (ECD) for patients after penetrating keratoplasty (PK) for a moderate-risk condition (principally Fuchs' dystrophy or pseudophakic/aphakic corneal edema). Methods. In a subset (n = 591) of Cornea Donor Study participants, postoperative ECD was determined by a central reading center. Various statistical models were considered to estimate the ECD trend longitudinally over 10 years of follow-up. A biexponential model with and without a logarithm transformation was fit using the Gauss-Newton nonlinear least squares algorithm. To account for correlated data, a log-polynomial model was fit using the restricted maximum likelihood method. A sensitivity analysis for the potential bias due to selective dropout was performed using Bayesian analysis techniques. Results. The three models using a logarithm transformation yield similar trends, whereas the model without the transform predicts higher ECD values. The adjustment for selective dropout turns out to be negligible. However, this is possibly due to the relatively low rate of graft failure in this cohort (19% at 10 years). Fuchs' dystrophy and pseudophakic/aphakic corneal edema (PACE) patients had similar ECD decay curves, with the PACE group having slightly higher cell densities by 10 years. Conclusions. Endothelial cell loss after PK can be modeled via a log-polynomial model, which accounts for the correlated data from repeated measures on the same subject. This model is not significantly affected by the selective dropout due to graft failure. Our findings warrant further study on how this may extend to ECD following endothelial keratoplasty. PMID:25425307

PATHA: Performance Analysis Tool for HPC Applications

DOE PAGES

Yoo, Wucherl; Koo, Michelle; Cao, Yi; ...

2016-02-18

Large science projects rely on complex workflows to analyze terabytes or petabytes of data. These jobs are often running over thousands of CPU cores and simultaneously performing data accesses, data movements, and computation. It is difficult to identify bottlenecks or to debug the performance issues in these large workflows. In order to address these challenges, we have developed Performance Analysis Tool for HPC Applications (PATHA) using the state-of-art open source big data processing tools. Our framework can ingest system logs to extract key performance measures, and apply the most sophisticated statistical tools and data mining methods on the performance data.more » Furthermore, it utilizes an efficient data processing engine to allow users to interactively analyze a large amount of different types of logs and measurements. To illustrate the functionality of PATHA, we conduct a case study on the workflows from an astronomy project known as the Palomar Transient Factory (PTF). This study processed 1.6 TB of system logs collected on the NERSC supercomputer Edison. Using PATHA, we were able to identify performance bottlenecks, which reside in three tasks of PTF workflow with the dependency on the density of celestial objects.« less

The metabolic syndrome in black hypertensive women--waist circumference more strongly related than body mass index.

PubMed

Rheeder, P; Stolk, R P; Veenhouwer, J F; Grobbee, D E

2002-08-01

To examine the association between measures of obesity and features of the metabolic syndrome in treated black female hypertensive subjects. Cross-sectional study. An urban primary health care centre in Mamelodi, Pretoria. Women with hypertension and without known diabetes mellitus or secondary causes of hypertension. In total 124 women participated, with a mean age of 56.9 years (standard deviation (SD) 11.0) and mean body mass index (BMI) of 34.1 kg/m2 (SD 8.1). Blood pressure, glucose, insulin and lipid levels. Waist circumference and waist-hip ratio were more strongly associated with insulin, uric acid, glucose and triglycerides than was BMI. Statistically significant associations were found between waist circumference and low high-density lipoprotein HDL cholesterol (standardised regression coefficient -0.006, standard error of the mean (SEM) 0.002), log triglycerides (0.007, SEM 0.003), uric acid (0.002, SEM 0.001) and log insulin (0.012, SEM 0.003). BMI was only significantly associated with uric acid (0.002, SEM 0.002) and log insulin (0.009, SEM 0.004). In a group of black hypertensive women measures of central obesity were more strongly associated with components of the metabolic syndrome than BMI.

Preliminary Fracture Description from Core, Lithological Logs, and Borehole Geophysical Data in Slimhole Wells Drilled for Project Hotspot: the Snake River Geothermal Drilling Project

NASA Astrophysics Data System (ADS)

Kessler, J. A.; Evans, J. P.; Shervais, J. W.; Schmitt, D.

2011-12-01

The Snake River Geothermal Drilling Project (Project Hotspot) seeks to assess the potential for geothermal energy development in the Snake River Plain (SRP), Idaho. Three deep slimhole wells are drilled at the Kimama, Kimberly, and Mountain Home sites in the central SRP. The Kimama and Kimberly wells are complete and the Mountain Home well is in progress. Total depth at Kimama is 1,912 m while total depth at Kimberly is 1,958 m. Mountain Home is expected to reach around 1,900 m. Full core is recovered and complete suites of wireline borehole geophysical data have been collected at both Kimama and Kimberly sites along with vertical seismic profiles. Part of the geothermal assessment includes evaluating the changes in the nature of fractures with depth through the study of physical core samples and analysis of the wireline geophysical data to better understand how fractures affect permeability in the zones that have the potential for geothermal fluid migration. The fracture inventory is complete for the Kimama borehole and preliminary analyses indicate that fracture zones are related to basaltic flow boundaries. The average fracture density is 17 fractures/3 m. The maximum fracture density is 110 fractures/3 m. Fracture density varies with depth and increases considerably in the bottom 200 m of the well. Initial indications are that the majority of fractures are oriented subhorizontally but a considerable number are oriented subvertically as well. We expect to statistically evaluate the distribution of fracture length and orientation as well as analyze local alteration and secondary mineralization that might indicate fluid pathways that we can use to better understand permeability at depth in the borehole. Near real-time temperature data from the Kimama borehole indicate a temperature gradient of 82°C/km below the base of the Snake River Plain aquifer at a depth of 960 m bgs. The measured temperature at around 1,400 m depth is 55°C and the projected temperature at 2,000 m depth is 102°C. The rock types at Kimama and Kimberly are primarily basalt and rhyolite, respectively, with interbedded thin sedimentary layers. We identify anomalies in the physical properties of igneous rocks using porosity logs (neutron and acoustic), lithology logs (gamma ray and magnetic susceptibility) and fracture/saturation logs (televiewer and electrical resistivity). The core will be used to constrain the geophysical data and confirm the ability to identify permeability in fracture zones and saturated zones through analysis of the wireline log data. The matrix porosity of these igneous lithologies is near zero aside from porosity from vugs and vesicles. However, open and sealed fractures indicate that mineralizing fluids form connected pathways in the rock. Core samples show a series of alteration phases, including amygdaloidal fine-grained calcite and secondary clays. The geophysical data will be used to predict anomalies in lithology and identify open fractures and saturated zones with high permeability.

Maternal Malaria and Perinatal HIV Transmission, Western Kenya1,2

PubMed Central

Ayisi, John G.; van Eijk, Anna M.; ter Kuile, Feiko O.; Shi, Ya Ping; Yang, Chunfu; Kolczak, Margarette S.; Otieno, Juliana A.; Misore, Ambrose O.; Kager, Piet A.; Lal, Renu B.; Steketee, Richard W.; Nahlen, Bernard L.

2004-01-01

To determine whether maternal placental malaria is associated with an increased risk for perinatal mother-to-child HIV transmission (MTCT), we studied HIV-positive women in western Kenya. We enrolled 512 mother-infant pairs; 128 (25.0%) women had malaria, and 102 (19.9%) infants acquired HIV perinatally. Log10 HIV viral load and episiotomy or perineal tear were associated with increased perinatal HIV transmission, whereas low-density malaria (<10,000 parasites/μL) was associated with reduced risk (adjusted relative risk [ARR] 0.4). Among women dually infected with malaria and HIV, high-density malaria (>10,000 parasites/μL) was associated with increased risk for perinatal MTCT (ARR 2.0), compared to low-density malaria. The interaction between placental malaria and MTCT appears to be variable and complex: placental malaria that is controlled at low density may cause an increase in broad-based immune responses that protect against MTCT; uncontrolled, high-density malaria may simultaneously disrupt placental architecture and generate substantial antigen stimulus to HIV replication and increase risk for MTCT. PMID:15200854

Assigning uncertainties in the inversion of NMR relaxation data.

PubMed

Parker, Robert L; Song, Yi-Qaio

2005-06-01

Recovering the relaxation-time density function (or distribution) from NMR decay records requires inverting a Laplace transform based on noisy data, an ill-posed inverse problem. An important objective in the face of the consequent ambiguity in the solutions is to establish what reliable information is contained in the measurements. To this end we describe how upper and lower bounds on linear functionals of the density function, and ratios of linear functionals, can be calculated using optimization theory. Those bounded quantities cover most of those commonly used in the geophysical NMR, such as porosity, T(2) log-mean, and bound fluid volume fraction, and include averages over any finite interval of the density function itself. In the theory presented statistical considerations enter to account for the presence of significant noise in the signal, but not in a prior characterization of density models. Our characterization of the uncertainties is conservative and informative; it will have wide application in geophysical NMR and elsewhere.

Increasing market efficiency in the stock markets

NASA Astrophysics Data System (ADS)

Yang, Jae-Suk; Kwak, Wooseop; Kaizoji, Taisei; Kim, In-Mook

2008-01-01

We study the temporal evolutions of three stock markets; Standard and Poor's 500 index, Nikkei 225 Stock Average, and the Korea Composite Stock Price Index. We observe that the probability density function of the log-return has a fat tail but the tail index has been increasing continuously in recent years. We have also found that the variance of the autocorrelation function, the scaling exponent of the standard deviation, and the statistical complexity decrease, but that the entropy density increases as time goes over time. We introduce a modified microscopic spin model and simulate the model to confirm such increasing and decreasing tendencies in statistical quantities. These findings indicate that these three stock markets are becoming more efficient.

Comparison of parametric and bootstrap method in bioequivalence test.

PubMed

Ahn, Byung-Jin; Yim, Dong-Seok

2009-10-01

The estimation of 90% parametric confidence intervals (CIs) of mean AUC and Cmax ratios in bioequivalence (BE) tests are based upon the assumption that formulation effects in log-transformed data are normally distributed. To compare the parametric CIs with those obtained from nonparametric methods we performed repeated estimation of bootstrap-resampled datasets. The AUC and Cmax values from 3 archived datasets were used. BE tests on 1,000 resampled datasets from each archived dataset were performed using SAS (Enterprise Guide Ver.3). Bootstrap nonparametric 90% CIs of formulation effects were then compared with the parametric 90% CIs of the original datasets. The 90% CIs of formulation effects estimated from the 3 archived datasets were slightly different from nonparametric 90% CIs obtained from BE tests on resampled datasets. Histograms and density curves of formulation effects obtained from resampled datasets were similar to those of normal distribution. However, in 2 of 3 resampled log (AUC) datasets, the estimates of formulation effects did not follow the Gaussian distribution. Bias-corrected and accelerated (BCa) CIs, one of the nonparametric CIs of formulation effects, shifted outside the parametric 90% CIs of the archived datasets in these 2 non-normally distributed resampled log (AUC) datasets. Currently, the 80~125% rule based upon the parametric 90% CIs is widely accepted under the assumption of normally distributed formulation effects in log-transformed data. However, nonparametric CIs may be a better choice when data do not follow this assumption.

Comparison of Parametric and Bootstrap Method in Bioequivalence Test

PubMed Central

Ahn, Byung-Jin

2009-01-01

The estimation of 90% parametric confidence intervals (CIs) of mean AUC and Cmax ratios in bioequivalence (BE) tests are based upon the assumption that formulation effects in log-transformed data are normally distributed. To compare the parametric CIs with those obtained from nonparametric methods we performed repeated estimation of bootstrap-resampled datasets. The AUC and Cmax values from 3 archived datasets were used. BE tests on 1,000 resampled datasets from each archived dataset were performed using SAS (Enterprise Guide Ver.3). Bootstrap nonparametric 90% CIs of formulation effects were then compared with the parametric 90% CIs of the original datasets. The 90% CIs of formulation effects estimated from the 3 archived datasets were slightly different from nonparametric 90% CIs obtained from BE tests on resampled datasets. Histograms and density curves of formulation effects obtained from resampled datasets were similar to those of normal distribution. However, in 2 of 3 resampled log (AUC) datasets, the estimates of formulation effects did not follow the Gaussian distribution. Bias-corrected and accelerated (BCa) CIs, one of the nonparametric CIs of formulation effects, shifted outside the parametric 90% CIs of the archived datasets in these 2 non-normally distributed resampled log (AUC) datasets. Currently, the 80~125% rule based upon the parametric 90% CIs is widely accepted under the assumption of normally distributed formulation effects in log-transformed data. However, nonparametric CIs may be a better choice when data do not follow this assumption. PMID:19915699

A composite lithology log while drilling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tannenbaum, E.; Sutcliffe, B.; Franks, A.

A new method for producing a computerized composite lithology log (CLL) while drilling by integrating MWD (measurement while drilling) and surface data is described. At present, lithology logs are produced at the well site by mud loggers. They provide basic description and relative amounts of lithologies. Major difficulties are encountered in relating the cuttings to their original formations due to mixing in the drilling mud while transporting to the surface, sloughing shales, flawed sampling, etc. This results in a poor control on the stratigraphic sequence and on the depth of formation boundaries. A composite log can be produced after drillingmore » this additional inputs such as wireline, petrography, and paleontology. This process is labor intensive and expensive. The CLL integrates three types of data (MWD mechanical, MWD geophysical, and surface cuttings) acquired during drilling, in three time stages: (1) Real Time. MWD drilling mechanical data including the rate of penetration and the downhole torque. This stage would provide bed boundaries and some inferred lithology. This would assist the driller with immediate drilling decisions and determine formation tops for coring, casing point, and correlation. (2) MWD Time. Recomputation of the above by adding MWD geophysical data (gamma-ray, resistivity, neutron-density). This stage would upgrade the lithology inference, and give higher resolution to bed boundaries, (3) Lag Time. Detailed analysis of surface cuttings to confirm the inferred lithologies. This last input results in a high-quality CLL with accurate lithologies and bed boundaries.« less

The shapes of column density PDFs. The importance of the last closed contour

NASA Astrophysics Data System (ADS)

Alves, João; Lombardi, Marco; Lada, Charles J.

2017-10-01

The probability distribution function of column density (PDF) has become the tool of choice for cloud structure analysis and star formation studies. Its simplicity is attractive, and the PDF could offer access to cloud physical parameters otherwise difficult to measure, but there has been some confusion in the literature on the definition of its completeness limit and shape at the low column density end. In this letter we use the natural definition of the completeness limit of a column density PDF, the last closed column density contour inside a surveyed region, and apply it to a set of large-scale maps of nearby molecular clouds. We conclude that there is no observational evidence for log-normal PDFs in these objects. We find that all studied molecular clouds have PDFs well described by power laws, including the diffuse cloud Polaris. Our results call for a new physical interpretation of the shape of the column density PDFs. We find that the slope of a cloud PDF is invariant to distance but not to the spatial arrangement of cloud material, and as such it is still a useful tool for investigating cloud structure.

High Sensitivity Gravity Measurements in the Adverse Environment of Oil Wells

NASA Astrophysics Data System (ADS)

Pfutzner, Harold

2014-03-01

Bulk density is a primary measurement within oil and gas reservoirs and is the basis of most reserves calculations by oil companies. The measurement is performed with a gamma-ray source and two scintillation gamma-ray detectors from within newly drilled exploration and production wells. This nuclear density measurement, while very precise is also very shallow and is therefore susceptible to errors due to any alteration of the formation and fluids in the vicinity of the borehole caused by the drilling process. Measuring acceleration due to gravity along a well provides a direct measure of bulk density with a very large depth of investigation that makes it practically immune to errors from near-borehole effects. Advances in gravity sensors and associated mechanics and electronics provide an opportunity for routine borehole gravity measurements with comparable density precision to the nuclear density measurement and with sufficient ruggedness to survive the rough handling and high temperatures experienced in oil well logging. We will describe a borehole gravity meter and its use under very realistic conditions in an oil well in Saudi Arabia. The density measurements will be presented. Alberto Marsala (2), Paul Wanjau (1), Olivier Moyal (1), and Justin Mlcak (1); (1) Schlumberger, (2) Saudi Aramco.

Understanding star formation in molecular clouds. II. Signatures of gravitational collapse of IRDCs

NASA Astrophysics Data System (ADS)

Schneider, N.; Csengeri, T.; Klessen, R. S.; Tremblin, P.; Ossenkopf, V.; Peretto, N.; Simon, R.; Bontemps, S.; Federrath, C.

2015-06-01

We analyse column density and temperature maps derived from Herschel dust continuum observations of a sample of prominent, massive infrared dark clouds (IRDCs) i.e. G11.11-0.12, G18.82-0.28, G28.37+0.07, and G28.53-0.25. We disentangle the velocity structure of the clouds using 13CO 1→0 and 12CO 3→2 data, showing that these IRDCs are the densest regions in massive giant molecular clouds (GMCs) and not isolated features. The probability distribution function (PDF) of column densities for all clouds have a power-law distribution over all (high) column densities, regardless of the evolutionary stage of the cloud: G11.11-0.12, G18.82-0.28, and G28.37+0.07 contain (proto)-stars, while G28.53-0.25 shows no signs of star formation. This is in contrast to the purely log-normal PDFs reported for near and/or mid-IR extinction maps. We only find a log-normal distribution for lower column densities, if we perform PDFs of the column density maps of the whole GMC in which the IRDCs are embedded. By comparing the PDF slope and the radial column density profile of three of our clouds, we attribute the power law to the effect of large-scale gravitational collapse and to local free-fall collapse of pre- and protostellar cores for the highest column densities. A significant impact on the cloud properties from radiative feedback is unlikely because the clouds are mostly devoid of star formation. Independent from the PDF analysis, we find infall signatures in the spectral profiles of 12CO for G28.37+0.07 and G11.11-0.12, supporting the scenario of gravitational collapse. Our results are in line with earlier interpretations that see massive IRDCs as the densest regions within GMCs, which may be the progenitors of massive stars or clusters. At least some of the IRDCs are probably the same features as ridges (high column density regions with N> 1023 cm-2 over small areas), which were defined for nearby IR-bright GMCs. Because IRDCs are only confined to the densest (gravity dominated) cloud regions, the PDF constructed from this kind of a clipped image does not represent the (turbulence dominated) low column density regime of the cloud. The column density maps (FITS files) are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/578/A29

Ultraviolet luminosity density of the universe during the epoch of reionization.

PubMed

Mitchell-Wynne, Ketron; Cooray, Asantha; Gong, Yan; Ashby, Matthew; Dolch, Timothy; Ferguson, Henry; Finkelstein, Steven; Grogin, Norman; Kocevski, Dale; Koekemoer, Anton; Primack, Joel; Smidt, Joseph

2015-09-08

The spatial fluctuations of the extragalactic background light trace the total emission from all stars and galaxies in the Universe. A multiwavelength study can be used to measure the integrated emission from first galaxies during reionization when the Universe was about 500 million years old. Here we report arcmin-scale spatial fluctuations in one of the deepest sky surveys with the Hubble Space Telescope in five wavebands between 0.6 and 1.6 μm. We model-fit the angular power spectra of intensity fluctuation measurements to find the ultraviolet luminosity density of galaxies at redshifts greater than 8 to be log ρ(UV) = 27.4(+0.2)(-1.2) ergs(-1) Hz(-1) Mpc(-3) (1σ). This level of integrated light emission allows for a significant surface density of fainter primeval galaxies that are below the point-source detection level in current surveys.

Globular cluster seeding by primordial black hole population

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolgov, A.; Postnov, K., E-mail: dolgov@fe.infn.it, E-mail: kpostnov@gmail.com

Primordial black holes (PBHs) that form in the early Universe in the modified Affleck-Dine (AD) mechanism of baryogenesis should have intrinsic log-normal mass distribution of PBHs. We show that the parameters of this distribution adjusted to provide the required spatial density of massive seeds (≥ 10{sup 4} M {sub ⊙}) for early galaxy formation and not violating the dark matter density constraints, predict the existence of the population of intermediate-mass PBHs with a number density of 0∼ 100 Mpc{sup −3}. We argue that the population of intermediate-mass AD PBHs can also seed the formation of globular clusters in galaxies. Inmore » this scenario, each globular cluster should host an intermediate-mass black hole with a mass of a few thousand solar masses, and should not obligatorily be immersed in a massive dark matter halo.« less

Landscape fuel reduction, forest fire, and biophysical linkages to local habitat use and local persistence of fishers (Pekania pennanti) in Sierra Nevada mixed-conifer forests

Treesearch

R.A. Sweitzer; B.J. Furnas; R.H. Barrett; Kathryn Purcell; Craig Thompson

2016-01-01

Fire suppression and logging have contributed to major changes in California’s Sierra Nevada forests. Strategically placed landscape treatments (SPLATS) are being used to reduce density of trees, shrubs, and surface fuels to limit wildfire intensity and spread, but may negatively impact fishers (Pekania pennanti). We used camera traps to survey for...

Acoustic reflection log in transversely isotropic formations

NASA Astrophysics Data System (ADS)

Ronquillo Jarillo, G.; Markova, I.; Markov, M.

2018-01-01

We have calculated the waveforms of sonic reflection logging for a fluid-filled borehole located in a transversely isotropic rock. Calculations have been performed for an acoustic impulse source with the characteristic frequency of tens of kilohertz that is considerably less than the frequencies of acoustic borehole imaging tools. It is assumed that the borehole axis coincides with the axis of symmetry of the transversely isotropic rock. It was shown that the reflected wave was excited most efficiently at resonant frequencies. These frequencies are close to the frequencies of oscillations of a fluid column located in an absolutely rigid hollow cylinder. We have shown that the acoustic reverberation is controlled by the acoustic impedance of the rock Z = Vphρs for fixed parameters of the borehole fluid, where Vph is the velocity of horizontally propagating P-wave; ρs is the rock density. The methods of waveform processing to determine the parameters characterizing the reflected wave have been discussed.

Observational constraints on the inter-binary stellar flare hypothesis for the gamma-ray bursts

NASA Astrophysics Data System (ADS)

Rao, A. R.; Vahia, M. N.

1994-01-01

The Gamma Ray Observatory/Burst and Transient Source Experiment (GRO/BATSE) results on the Gamma Ray Bursts (GRBs) have given an internally consistent set of observations of about 260 GRBs which have been released for analysis by the BATSE team. Using this database we investigate our earlier suggestion (Vahia and Rao, 1988) that GRBs are inter-binary stellar flares from a group of objects classified as Magnetically Active Stellar Systems (MASS) which includes flare stars, RS CVn binaries and cataclysmic variables. We show that there exists an observationally consistent parameter space for the number density, scale height and flare luminosity of MASS which explains the complete log(N) - log(P) distribution of GRBs as also the observed isotropic distribution. We further use this model to predict anisotropy in the GRB distribution at intermediate luminosities. We make definite predictions under the stellar flare hypothesis that can be tested in the near future.

Log-Linear Models for Gene Association

PubMed Central

Hu, Jianhua; Joshi, Adarsh; Johnson, Valen E.

2009-01-01

We describe a class of log-linear models for the detection of interactions in high-dimensional genomic data. This class of models leads to a Bayesian model selection algorithm that can be applied to data that have been reduced to contingency tables using ranks of observations within subjects, and discretization of these ranks within gene/network components. Many normalization issues associated with the analysis of genomic data are thereby avoided. A prior density based on Ewens’ sampling distribution is used to restrict the number of interacting components assigned high posterior probability, and the calculation of posterior model probabilities is expedited by approximations based on the likelihood ratio statistic. Simulation studies are used to evaluate the efficiency of the resulting algorithm for known interaction structures. Finally, the algorithm is validated in a microarray study for which it was possible to obtain biological confirmation of detected interactions. PMID:19655032

Bio-activity of aminosulfonyl ureas in the light of nucleic acid bases and DNA base pair interaction.

PubMed

Mondal Roy, Sutapa

2018-08-01

The quantum chemical descriptors based on density functional theory (DFT) are applied to predict the biological activity (log IC 50 ) of one class of acyl-CoA: cholesterol O-acyltransferase (ACAT) inhibitors, viz. aminosulfonyl ureas. ACAT are very effective agents for reduction of triglyceride and cholesterol levels in human body. Successful two parameter quantitative structure-activity relationship (QSAR) models are developed with a combination of relevant global and local DFT based descriptors for prediction of biological activity of aminosulfonyl ureas. The global descriptors, electron affinity of the ACAT inhibitors (EA) and/or charge transfer (ΔN) between inhibitors and model biosystems (NA bases and DNA base pairs) along with the local group atomic charge on sulfonyl moiety (∑Q Sul ) of the inhibitors reveals more than 90% efficacy of the selected descriptors for predicting the experimental log (IC 50 ) values. Copyright © 2018 Elsevier Ltd. All rights reserved.

Description, Properties, and Degradation of Selected Volatile Organic Compounds Detected in Ground Water--A Review of Selected Literature

USGS Publications Warehouse

Lawrence, Stephen J.

2006-01-01

This report provides abridged information describing the most salient properties and biodegradation of 27 chlorinated volatile organic compounds detected during ground-water studies in the United States. This information is condensed from an extensive list of reports, papers, and literature published by the U.S. Government, various State governments, and peer-reviewed journals. The list includes literature reviews, compilations, and summaries describing volatile organic compounds in ground water. This report cross-references common names and synonyms associated with volatile organic compounds with the naming conventions supported by the International Union of Pure and Applied Chemistry. In addition, the report describes basic physical characteristics of those compounds such as Henry's Law constant, water solubility, density, octanol-water partition (log Kow), and organic carbon partition (log Koc) coefficients. Descriptions and illustrations are provided for natural and laboratory biodegradation rates, chemical by-products, and degradation pathways.

Black hole demographics from the M•-σ relation

NASA Astrophysics Data System (ADS)

Merritt, David; Ferrarese, Laura

2001-01-01

We analyse a sample of 32 galaxies for which a dynamical estimate of the mass of the hot stellar component, Mbulge, is available. For each of these galaxies, we calculate the mass of the central black hole, M•, using the tight empirical correlation between M• and bulge stellar velocity dispersion. The frequency function N[log(M•Mbulge)] is reasonably well described as a Gaussian with ~-2.90 and standard deviation ~0.45 the implied mean ratio of black hole mass to bulge mass is a factor of ~5 smaller than generally quoted in the literature. We present marginal evidence for a lower, average black hole mass fraction in more massive galaxies. The total mass density in black holes in the local Universe is estimated to be ~ 5×105MsolarMpc-3, consistent with that inferred from high-redshift (z~2) active galactic nuclei.

Vegetation correlates of gibbon density in the peat-swamp forest of the Sabangau catchment, Central Kalimantan, Indonesia.

PubMed

Hamard, Marie; Cheyne, Susan M; Nijman, Vincent

2010-06-01

Understanding the complex relationship between primates and their habitats is essential for effective conservation plans. Peat-swamp forest has recently been recognized as an important habitat for the Southern Bornean gibbon (Hylobates albibarbis), but information is scarce on the factors that link gibbon density to characteristics of this unique ecosystem. Our aims in this study were firstly to estimate gibbon density in different forest subtypes in a newly protected, secondary peat-swamp forest in the Sabangau Catchment, Indonesia, and secondly to identify which vegetation characteristics correlate with gibbon density. Data collection was conducted in a 37.1 km(2) area, using auditory sampling methods and vegetation "speed plotting". Gibbon densities varied between survey sites from 1.39 to 3.92 groups/km(2). Canopy cover, tree height, density of large trees and food availability were significantly correlated with gibbon density, identifying the preservation of tall trees and good canopy cover as a conservation priority for the gibbon population in the Sabangau forest. This survey indicates that selective logging, which specifically targets large trees and disrupts canopy cover, is likely to have adverse effects on gibbon populations in peat-swamp forests, and calls for greater protection of these little-studied ecosystems. (c) 2010 Wiley-Liss, Inc.

The effect of habitat disturbance on the abundance of nocturnal lemur species on the Masoala Peninsula, northeastern Madagascar.

PubMed

Sawyer, Rachel Mary; Fenosoa, Zo Samuel Ella; Andrianarimisa, Aristide; Donati, Giuseppe

2017-01-01

Madagascar is one of the world's biodiversity hotspots. The island's past and current rates of deforestation and habitat disturbance threaten its plethora of endemic biodiversity. On Madagascar, tavy (slash and burn agriculture), land conversion for rice cultivation, illegal hardwood logging and bushmeat hunting are the major contributors to habitat disturbance. Understanding species-specific responses to habitat disturbance across different habitat types is crucial when designing conservation strategies. We surveyed three nocturnal lemur species in four forest types of varying habitat disturbance on the Masoala Peninsula, northeastern Madagascar. We present here updated abundance and density estimates for the Endangered Avahi mooreorum and Lepilemur scottorum, and Microcebus sp. Distance sampling surveys were conducted on 11 transects, covering a total of 33 km after repeated transect walks. We collected data on tree height, bole height, diameter at breast height, canopy cover and tree density using point-quarter sampling to characterise the four forest types (primary lowland, primary littoral, selectively logged and agricultural mosaic). Median encounter rates by forest type ranged from 1 to 1.5 individuals (ind.)/km (Microcebus sp.), 0-1 ind./km (A. mooreorum) and 0-1 ind./km (L. scottorum). Species density estimates were calculated at 232.31 ind./km 2 (Microcebus sp.) and 121.21 ind./km 2 (A. mooreorum), while no density estimate is provided for L. scottorum due to a small sample size. Microcebus sp. was most tolerant to habitat disturbance, exhibiting no significant effect of forest type on abundance. Its small body size, omnivorous diet and generalised locomotion appear to allow it to tolerate a variety of habitat disturbance. Both A. mooreorum and L. scottorum showed significant effects of forest type on their respective abundance. This study suggests that the specialist locomotion and diet of A. mooreorum and L. scottorum make them susceptible to the effects of increasing habitat disturbance.

GAMA/H-ATLAS: The Dust Opacity-Stellar Mass Surface Density Relation for Spiral Galaxies

NASA Astrophysics Data System (ADS)

Grootes, M. W.; Tuffs, R. J.; Popescu, C. C.; Pastrav, B.; Andrae, E.; Gunawardhana, M.; Kelvin, L. S.; Liske, J.; Seibert, M.; Taylor, E. N.; Graham, Alister W.; Baes, M.; Baldry, I. K.; Bourne, N.; Brough, S.; Cooray, A.; Dariush, A.; De Zotti, G.; Driver, S. P.; Dunne, L.; Gomez, H.; Hopkins, A. M.; Hopwood, R.; Jarvis, M.; Loveday, J.; Maddox, S.; Madore, B. F.; Michałowski, M. J.; Norberg, P.; Parkinson, H. R.; Prescott, M.; Robotham, A. S. G.; Smith, D. J. B.; Thomas, D.; Valiante, E.

2013-03-01

We report the discovery of a well-defined correlation between B-band face-on central optical depth due to dust, τ ^f_B, and the stellar mass surface density, μ*, of nearby (z <= 0.13) spiral galaxies: {log}(τ ^{f}_{B}) = 1.12(+/- 0.11) \\cdot {log}({μ _{*}}/{{M}_{⊙ } {kpc}^{-2}}) - 8.6(+/- 0.8). This relation was derived from a sample of spiral galaxies taken from the Galaxy and Mass Assembly (GAMA) survey, which were detected in the FIR/submillimeter (submm) in the Herschel-ATLAS science demonstration phase field. Using a quantitative analysis of the NUV attenuation-inclination relation for complete samples of GAMA spirals categorized according to stellar mass surface density, we demonstrate that this correlation can be used to statistically correct for dust attenuation purely on the basis of optical photometry and Sérsic-profile morphological fits. Considered together with previously established empirical relationships of stellar mass to metallicity and gas mass, the near linearity and high constant of proportionality of the τ ^f_B - μ_{*} relation disfavors a stellar origin for the bulk of refractory grains in spiral galaxies, instead being consistent with the existence of a ubiquitous and very rapid mechanism for the growth of dust in the interstellar medium. We use the τ ^f_B - μ_{*} relation in conjunction with the radiation transfer model for spiral galaxies of Popescu & Tuffs to derive intrinsic scaling relations between specific star formation rate (SFR), stellar mass, and stellar surface density, in which attenuation of the UV light used for the measurement of SFR is corrected on an object-to-object basis. A marked reduction in scatter in these relations is achieved which we demonstrate is due to correction of both the inclination-dependent and face-on components of attenuation. Our results are consistent with a general picture of spiral galaxies in which most of the submm emission originates from grains residing in translucent structures, exposed to UV in the diffuse interstellar radiation field.

Decomposition of New Woody Inputs as a Dry Tropical Forest Regenerates

NASA Astrophysics Data System (ADS)

Schilling, J. S.; Powers, J. S.; Ayres, A.; Kaffenberger, J. T.

2015-12-01

Modeling deadwood dynamics is limited by our empirical understanding of decomposition patterns and drivers. This gap is significant in dry tropical forests (and in the tropics, broadly) where forest regeneration is a management priority but where decision-making lacks resources. Our goal was to track decomposition and its biological drivers in tree boles added to the forest floor of a regenerating dry forest. We cut and then placed logs (~18 cm dia) of eight representative tree species in ground contact at two different sites (n=8, per site). We tracked density loss and element import/export in both sapwood and heartwood each 6 months over two years. We measured initial and final lignin, structural carbohydrates, nitrogen, and extractives. We also quantified insect gallery volumes, and used two residue 'signatures' to determine dominant fungal rot type: 1) dilute alkali solubility (DAS) and lignin:glucan loss. By year 2, mean density losses in sapwood were 11.6 - 44.4% among tree species, excluding one species that decomposed completely. The best predictor of density loss in sapwood was initial pH, but the correlation was negative rather than positive, as has been reported in temperate systems. Decay was consistently more advanced in sapwood than in heartwood, and although extractives were as high as 16.4% in heartwood, trait-density loss correlations were insignificant. Insects contributed little at this stage to density loss (<3%), and both lignin:glucan loss and DAS confirmed that white rot fungi dominated decomposition. Although element import dynamics broadly resembled those from temperate studies (e.g., Ca gain, P, K loss), there was high spatial variability. This perhaps related to zone line (spalting) complexity, suggesting intense competition among fungi colonizing small territories within the wood. Estimated CO2 fluxes from the test logs ranged from ~25 to 75% of the annual fluxes from litter fall at these sites. Collectively, these results implicate wood decomposition as an important component of dry forest carbon cycling. Emergent patterns from decomposers are also interesting in this case, where fungi assigned as a single functional group (white rot type) produced little variability in decay rates (Function 1) but high variability in element translocation (Function 2).

First detection of hydrogen in the β Pictoris gas disk

NASA Astrophysics Data System (ADS)

Wilson, P. A.; Lecavelier des Etangs, A.; Vidal-Madjar, A.; Bourrier, V.; Hébrard, G.; Kiefer, F.; Beust, H.; Ferlet, R.; Lagrange, A.-M.

2017-03-01

The young and nearby star β Pictoris (β Pic) is surrounded by a debris disk composed of dust and gas known to host a myriad evaporating exocomets, planetesimals and at least one planet. At an edge-on inclination, as seen from Earth, this system is ideal for debris disk studies providing an excellent opportunity to use absorption spectroscopy to study the planet forming environment. Using the Cosmic Origins Spectrograph (COS) instrument on the Hubble Space Telescope (HST) we observe the most abundant element in the disk, hydrogen, through the H I Lyman α (Ly-α) line. We present a new technique to decrease the contamination of the Ly-α line by geocoronal airglow in COS spectra. This Airglow Virtual Motion (AVM) technique allows us to shift the Ly-α line of the astrophysical target away from the contaminating airglow emission revealing more of the astrophysical line profile. This new AVM technique, together with subtraction of an airglow emission map, allows us to analyse the shape of the β Pic Ly-α emission line profile and from it, calculate the column density of neutral hydrogen surrounding β Pic. The column density of hydrogen in the β Pic stable gas disk at the stellar radial velocity is measured to be log (NH/ 1 cm2) ≪ 18.5. The Ly-α emission line profile is found to be asymmetric and we propose that this is caused by H I falling in towards the star with a bulk radial velocity of 41 ± 6 km s-1 relative to β Pic and a column density of log (NH/ 1 cm2) = 18.6 ± 0.1. The high column density of hydrogen relative to the hydrogen content of CI chondrite meteorites indicates that the bulk of the hydrogen gas does not come from the dust in the disk. This column density reveals a hydrogen abundance much lower than solar, which excludes the possibility that the detected hydrogen could be a remnant of the protoplanetary disk or gas expelled by the star. We hypothesise that the hydrogen gas observed falling towards the star arises from the dissociation of water originating from evaporating exocomets.

Inactivation of Bacillus cereus by Na-chlorophyllin-based photosensitization on the surface of packaging.

PubMed

Luksiene, Z; Buchovec, I; Paskeviciute, E

2010-11-01

This study was focused on the possibility to inactivate food-borne pathogen Bacillus cereus by Na-chlorophyllin (Na-Chl)-based photosensitization in vitro and after attachment to the surface of packaging material. Bacillus cereus in vitro or attached to the packaging was incubated with Na-Chl (7·5×10(-8) to 7·5×10(-5) mol l(-1) ) for 2-60min in phosphate buffer saline. Photosensitization was performed by illuminating cells under a light with a λ of 400nm and an energy density of 20mW cm(-2) . The illumination time varied 0-5min and subsequently the total energy dose was 0-6J cm(-2) . The results show that B. cereus vegetative cells in vitro or attached to the surface of packaging after incubation with 7·5×10(-7) mol l(-1) Na-Chl and following illumination were inactivated by 7log. The photoinactivation of B. cereus spores in vitro by 4log required higher (7·5×10(-6) mol l(-1) ) Na-Chl concentration. Decontamination of packaging material from attached spores by photosensitization reached 5log at 7·5×10(-5) mol l(-1) Na-Chl concentration. Comparative analysis of different packaging decontamination treatments indicates that washing with water can diminish pathogen population on the surface by <1log, 100ppm Na-hypochlorite reduces the pathogens about 1·7log and 200ppm Na-hypochlorite by 2·2log. Meanwhile, Na-Chl-based photosensitization reduces bacteria on the surface by 4·2 orders of magnitude. Food-borne pathogen B. cereus could be effectively inactivated (7log) by Na-Chl-based photosensitization in vitro and on the surface of packaging material. Spores are more resistant than vegetative cells to photosensitization-based inactivation. Comparison of different surface decontamination treatments indicates that Na-Chl-based photosensitization is much more effective antibacterial tool than washing with water or 200ppm Na-hypochlorite. Our data support the idea that Na-Chl-based photosensitization has great potential for future application as an environment-friendly, nonthermal surface decontamination technique. © 2010 The Authors. Journal of Applied Microbiology © 2010 The Society for Applied Microbiology.

Radiomic modeling of BI-RADS density categories

NASA Astrophysics Data System (ADS)

Wei, Jun; Chan, Heang-Ping; Helvie, Mark A.; Roubidoux, Marilyn A.; Zhou, Chuan; Hadjiiski, Lubomir

2017-03-01

Screening mammography is the most effective and low-cost method to date for early cancer detection. Mammographic breast density has been shown to be highly correlated with breast cancer risk. We are developing a radiomic model for BI-RADS density categorization on digital mammography (FFDM) with a supervised machine learning approach. With IRB approval, we retrospectively collected 478 FFDMs from 478 women. As a gold standard, breast density was assessed by an MQSA radiologist based on BI-RADS categories. The raw FFDMs were used for computerized density assessment. The raw FFDM first underwent log-transform to approximate the x-ray sensitometric response, followed by multiscale processing to enhance the fibroglandular densities and parenchymal patterns. Three ROIs were automatically identified based on the keypoint distribution, where the keypoints were obtained as the extrema in the image Gaussian scale-space. A total of 73 features, including intensity and texture features that describe the density and the parenchymal pattern, were extracted from each breast. Our BI-RADS density estimator was constructed by using a random forest classifier. We used a 10-fold cross validation resampling approach to estimate the errors. With the random forest classifier, computerized density categories for 412 of the 478 cases agree with radiologist's assessment (weighted kappa = 0.93). The machine learning method with radiomic features as predictors demonstrated a high accuracy in classifying FFDMs into BI-RADS density categories. Further work is underway to improve our system performance as well as to perform an independent testing using a large unseen FFDM set.

Cool and hot emission in a recurring active region jet

NASA Astrophysics Data System (ADS)

Mulay, Sargam M.; Zanna, Giulio Del; Mason, Helen

2017-09-01

Aims: We present a thorough investigation of the cool and hot temperature components in four recurring active region jets observed on July 10, 2015 using the Atmospheric Imaging Assembly (AIA), X-ray Telescope (XRT), and Interface Region Imaging Spectrograph (IRIS) instruments. Methods: A differential emission measure (DEM) analysis was performed on areas in the jet spire and footpoint regions by combining the IRIS spectra and the AIA observations. This procedure better constrains the low temperature DEM values by adding IRIS spectral lines. Plasma parameters, such as Doppler velocities, electron densities, nonthermal velocities and a filling factor were also derived from the IRIS spectra. Results: In the DEM analysis, significant cool emission was found in the spire and the footpoint regions. The hot emission was peaked at log T [K] = 5.6-5.9 and 6.5 respectively. The DEM curves show the presence of hot plasma (T = 3 MK) in the footpoint region. We confirmed this result by estimating the Fe XVIII emission from the AIA 94 Å channel which was formed at an effective temperature of log T [K] = 6.5. The average XRT temperatures were also found to be in agreement with log T [K] = 6.5. The emission measure (EM) was found to be three orders of magnitude higher in the AIA-IRIS DEM compared with that obtained using only AIA. The O IV (1399/1401 Å) electron densities were found to be 2.0×1010 cm-3 in the spire and 7.6 × 1010 cm-3 in the footpoint. Different threads along the spire show different plane-of-sky velocities both in the lower corona and transition region. Doppler velocities of 32 km s-1 (blueshifted) and 13 km s-1 (redshifted) were obtained in the spire and footpoint, respectively from the Si IV 1402.77 Å spectral line. Nonthermal velocities of 69 and 53 km s-1 were recorded in the spire and footpoint region, respectively. We obtained a filling factor of 0.1 in the spire at log T [K] = 5. Conclusions: The recurrent jet observations confirmed the presence of significant cool emission co-spatial with the coronal emission. The movie attached to Fig. 3 is available at http://www.aanda.org

Macular pigment levels do not influence C-Quant retinal straylight estimates in young Caucasians.

PubMed

Beirne, Raymond O

2014-03-01

Individuals with higher than normal levels of macular pigment optical density (MPOD) are less affected by disability glare, when using glare source lights with a strong short-wavelength component. The aim of this study was to investigate whether estimates of retinal straylight from the Oculus Cataract Quantifier (C-Quant), which corresponds to disability glare, are associated with estimates of macular pigment levels in young Caucasian eyes. Thirty-seven Caucasian individuals (aged 19 to 40 years) with good visual acuity, free from ocular disease and with clear ocular media participated. Macular pigment optical density was measured at 0.5 degrees eccentricity from the foveal centre using a heterochromatic flicker photometry-based densitometer instrument from MacularMetrics. Retinal straylight was estimated using the C-Quant, a commercially available device, which uses a psychophysical compensation comparison method. Mean MPOD was 0.39 ± 0.18 log units (range zero to 0.80) and was not significantly related to age (r = -0.07, p = 0.66). Mean straylight parameter (s) was 1.01 ± 0.09 log units (range 0.86 to 1.21) and was not significantly related to age (r = -0.03, p = 0.86). Although there was a small tendency for straylight measurements to be reduced in individuals with higher levels of MPOD, there was no statistically significant relationship between retinal straylight and MPOD (r = -0.17, p = 0.30). Ocular straylight, estimated by the Oculus C-Quant, is little influenced by macular pigment optical density. As the C-Quant uses balanced (white) lights, it is suggested that the previous findings on the effect of macular pigment critically depend on the use of blue-dominant glare sources. © 2013 The Author. Clinical and Experimental Optometry © 2013 Optometrists Association Australia.

Calculation of elastic properties in lower part of the Kola borehole from bulk chemical compositions of core samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Babeyko, A.Yu.; Sobolev, S.V.; Sinelnikov, E.D.

1994-09-01

In-situ elastic properties in deep boreholes are controlled by several factors, mainly by lithology, petrofabric, fluid-filled cracks and pores. In order to separate the effects of different factors it is useful to extract lithology-controlled part from observed in-situ velocities. For that purpose we calculated mineralogical composition and isotropic crack-free elastic properties in the lower part of the Kola borehole from bulk chemical compositions of core samples. We use a new technique of petrophysical modeling based on thermodynamic approach. The reasonable accuracy of the modeling is confirmed by comparison with the observations of mineralogical composition and laboratory measurements of density andmore » elastic wave velocities in upper crustal crystalline rocks at high confining pressure. Calculations were carried out for 896 core samples from the depth segment of 6840-10535m. Using these results we estimate density and crack-free isotropic elastic properties of 554 lithology-defined layers composing this depth segment. Average synthetic P-wave velocity appears to be 2.7% higher than the velocity from Vertical Seismic Profiling (VSP), and 5% higher than sonic log velocity. Average synthetic S-wave velocity is 1.4% higher than that from VSP. These differences can be explained by superposition of effects of fabric-related anisotropy, cracks aligned parallel to the foliation plain, and randomly oriented cracks, with the effects of cracks being the predominant control. Low sonic log velocities are likely caused by drilling-induced cracking (hydrofractures) in the borehole walls. The calculated synthetic density and velocity cross-sections can be used for much more detailed interpretations, for which, however, new, more detailed and reliable seismic data are required.« less

The global star formation law of galaxies revisited in the radio continuum

NASA Astrophysics Data System (ADS)

Liu, LiJie; Gao, Yu

2012-02-01

We study the global star formation law, the relation between the gas and star formation rate (SFR) in a sample of 130 local galaxies with infrared (IR) luminosities spanning over three orders of magnitude (109-1012 L⊙), which includes 91 normal spiral galaxies and 39 (ultra)luminous IR galaxies [(U)LIRGs]. We derive their total (atomic and molecular) gas and dense molecular gas masses using newly available HI, CO and HCN data from the literature. The SFR of galaxies is determined from total IR (8-1000 μm) and 1.4 GHz radio continuum (RC) luminosities. The galaxy disk sizes are defined by the de-convolved elliptical Gaussian FWHM of the RC maps. We derive the galaxy disk-averaged SFRs and various gas surface densities, and investigate their relationships. We find that the galaxy disk-averaged surface density of dense molecular gas mass has the tightest correlation with that of SFR (scatter ˜0.26 dex), and is linear in log-log space (power-law slope of N=1.03±0.02) across the full galaxy sample. The correlation between the total gas and SFR surface densities for the full sample has a somewhat larger scatter (˜0.48 dex), and is best fit by a power-law with slope 1.45±0.02. However, the slope changes from ˜1 when only normal spirals are considered, to ˜1.5 when more and more (U)LIRGs are included in the fitting. When different CO-to-H2 conversion factors are used to infer molecular gas masses for normal galaxies and (U)LIRGs, the bi-modal relations claimed recently in CO observations of high-redshift galaxies appear to also exist in local populations of star-forming galaxies.

New approaches in the indirect quantification of thermal rock properties in sedimentary basins: the well-log perspective

NASA Astrophysics Data System (ADS)

Fuchs, Sven; Balling, Niels; Förster, Andrea

2016-04-01

Numerical temperature models generated for geodynamic studies as well as for geothermal energy solutions heavily depend on rock thermal properties. Best practice for the determination of those parameters is the measurement of rock samples in the laboratory. Given the necessity to enlarge databases of subsurface rock parameters beyond drill core measurements an approach for the indirect determination of these parameters is developed, for rocks as well a for geological formations. We present new and universally applicable prediction equations for thermal conductivity, thermal diffusivity and specific heat capacity in sedimentary rocks derived from data provided by standard geophysical well logs. The approach is based on a data set of synthetic sedimentary rocks (clastic rocks, carbonates and evaporates) composed of mineral assemblages with variable contents of 15 major rock-forming minerals and porosities varying between 0 and 30%. Petrophysical properties are assigned to both the rock-forming minerals and the pore-filling fluids. Using multivariate statistics, relationships then were explored between each thermal property and well-logged petrophysical parameters (density, sonic interval transit time, hydrogen index, volume fraction of shale and photoelectric absorption index) on a regression sub set of data (70% of data) (Fuchs et al., 2015). Prediction quality was quantified on the remaining test sub set (30% of data). The combination of three to five well-log parameters results in predictions on the order of <15% for thermal conductivity and thermal diffusivity, and of <10% for specific heat capacity. Comparison of predicted and benchmark laboratory thermal conductivity from deep boreholes of the Norwegian-Danish Basin, the North German Basin, and the Molasse Basin results in 3 to 5% larger uncertainties with regard to the test data set. With regard to temperature models, the use of calculated TC borehole profiles approximate measured temperature logs with an error of <3°C along a 4 km deep profile. A benchmark comparison for thermal diffusivity and specific heat capacity is pending. Fuchs, Sven; Balling, Niels; Förster, Andrea (2015): Calculation of thermal conductivity, thermal diffusivity and specific heat capacity of sedimentary rocks using petrophysical well logs, Geophysical Journal International 203, 1977-2000, doi: 10.1093/gji/ggv403

Characterizing the Inner Accretionary Prism of the Nankai Trough with 3D Seismic and Logging While Drilling at IODP Site C0002

NASA Astrophysics Data System (ADS)

Boston, B.; Moore, G. F.; Jurado, M. J.; Sone, H.; Tobin, H. J.; Saffer, D. M.; Hirose, T.; Toczko, S.; Maeda, L.

2014-12-01

The deeper, inner parts of active accretionary prisms have been poorly studied due the lack of drilling data, low seismic image quality and typically thick overlying sediments. Our project focuses on the interior of the Nankai Trough inner accretionary prism using deep scientific drilling and a 3D seismic cube. International Ocean Discovery Program (IODP) Expedition 348 extended the existing riser hole to more than 3000 meters below seafloor (mbsf) at Site C0002. Logging while drilling (LWD) data included gamma ray, resistivity, resistivity image, and sonic logs. LWD analysis of the lower section revealed on the borehole images intense deformation characterized by steep bedding, faults and fractures. Bedding plane orientations were measured throughout, with minor gaps at heavily deformed zones disrupting the quality of the resistivity images. Bedding trends are predominantly steeply dipping (60-90°) to the NW. Interpretation of fractures and faults in the image log revealed the existence of different sets of fractures and faults and variable fracture density, remarkably high at fault zones. Gamma ray, resistivity and sonic logs indicated generally homogenous lithology interpretation along this section, consistent with the "silty-claystone" predominant lithologies described on cutting samples. Drops in sonic velocity were observed at the fault zones defined on borehole images. Seismic reflection interpretation of the deep faults in the inner prism is exceedingly difficult due to a strong seafloor multiple, high-angle bedding dips, and low frequency of the data. Structural reconstructions were employed to test whether folding of seismic horizons in the overlying forearc basin could be from an interpreted paleothrust within the inner prism. We used a trishear-based restoration to estimate fault slip on folded horizons landward of C0002. We estimate ~500 m of slip from a steeply dipping deep thrust within the last ~0.9 Ma. Folding is not found in the Kumano sediments near C0002, where normal faults and tilting dominate the modern basin deformation. Both logging and seismic are consistent in characterizing a heavily deformed inner prism. Most of this deformation must have occurred during or before formation of the overlying modern Kumano forearc basin sediments.

Gravity, aeromagnetic and rock-property data of the central California Coast Ranges

USGS Publications Warehouse

Langenheim, V.E.

2014-01-01

Gravity, aeromagnetic, and rock-property data were collected to support geologic-mapping, water-resource, and seismic-hazard studies for the central California Coast Ranges. These data are combined with existing data to provide gravity, aeromagnetic, and physical-property datasets for this region. The gravity dataset consists of approximately 18,000 measurements. The aeromagnetic dataset consists of total-field anomaly values from several detailed surveys that have been merged and gridded at an interval of 200 m. The physical property dataset consists of approximately 800 density measurements and 1,100 magnetic-susceptibility measurements from rock samples, in addition to previously published borehole gravity surveys from Santa Maria Basin, density logs from Salinas Valley, and intensities of natural remanent magnetization.

On the density of the corona in regions of type 3 activity

NASA Technical Reports Server (NTRS)

Kuiper, T. B. H.

1973-01-01

The east-west positions of 190 type 3 bursts were measured between 30 and 65 MHz with the log-periodic array at Clark Lake. A method is described to find the intrinsic variation of position with frequency of type 3 bursts based on the comparison of the positions of the bursts measured at any two arbitrary frequencies. It is found that the variation of position frequency agrees with the behaviour expected from coronal density models. This suggests that the measured positions were not seriously affected by scattering in the corona. Knowing the functional form of the variation of position with frequency for type 3 bursts, it is shown that the observed burst positions can be corrected for the effects of ionospheric refraction.

Prostate specific antigen and acinar density: a new dimension, the "Prostatocrit".

PubMed

Robinson, Simon; Laniado, Marc; Montgomery, Bruce

2017-01-01

Prostate-specific antigen densities have limited success in diagnosing prostate cancer. We emphasise the importance of the peripheral zone when considered with its cellular constituents, the "prostatocrit". Using zonal volumes and asymmetry of glandular acini, we generate a peripheral zone acinar volume and density. With the ratio to the whole gland, we can better predict high grade and all grade cancer. We can model the gland into its acinar and stromal elements. This new "prostatocrit" model could offer more accurate nomograms for biopsy. 674 patients underwent TRUS and biopsy. Whole gland and zonal volumes were recorded. We compared ratio and acinar volumes when added to a "clinic" model using traditional PSA density. Univariate logistic regression was used to find significant predictors for all and high grade cancer. Backwards multiple logistic regression was used to generate ROC curves comparing the new model to conventional density and PSA alone. Prediction of all grades of prostate cancer: significant variables revealed four significant "prostatocrit" parameters: log peripheral zone acinar density; peripheral zone acinar volume/whole gland acinar volume; peripheral zone acinar density/whole gland volume; peripheral zone acinar density. Acinar model (AUC 0.774), clinic model (AUC 0.745) (P=0.0105). Prediction of high grade prostate cancer: peripheral zone acinar density ("prostatocrit") was the only significant density predictor. Acinar model (AUC 0.811), clinic model (AUC 0.769) (P=0.0005). There is renewed use for ratio and "prostatocrit" density of the peripheral zone in predicting cancer. This outperforms all traditional density measurements. Copyright® by the International Brazilian Journal of Urology.

Saline aquifer mapping project in the southeastern United States

USGS Publications Warehouse

Williams, Lester J.; Spechler, Rick M.

2011-01-01

In 2009, the U.S. Geological Survey initiated a study of saline aquifers in the southeastern United States to evaluate the potential use of brackish or saline water from the deeper portions of the Floridan aquifer system and the underlying Coastal Plain aquifer system (Fig. 1). The objective of this study is to improve the overall understanding of the available saline water resources for potential future development. Specific tasks are to (1) develop a digital georeferenced database of borehole geophysical data to enable analysis and characterization of saline aquifers (see locations in Fig. 1), (2) identify and map the regional extent of saline aquifer systems and describe the thickness and character of hydrologic units that compose these systems, and (3) delineate salinity variations at key well sites and along section lines to provide a regional depiction of the freshwater-saltwater interfaces. Electrical resistivity and induction logs, coupled with a variety of different porosity logs (sonic, density, and neutron), are the primary types of borehole geophysical logs being used to estimate the water quality in brackish and saline formations. The results from the geophysical log calculations are being compared to available water-quality data obtained from water wells and from drill-stem water samples collected in test wells. Overall, the saline aquifer mapping project is helping to improve the understanding of saline water resources in the area. These aquifers may be sources of large quantities of water that could be treated by using reverse osmosis or similar technologies, or they could be used for aquifer storage and recovery systems.

Characterization of the Marcellus Shale based on computer-assisted correlation of wireline logs in Virginia and West Virginia

USGS Publications Warehouse

Enomoto, Catherine B.; Olea, Ricardo A.; Coleman, James L.

2014-01-01

The Middle Devonian Marcellus Shale in the Appalachian basin extends from central Ohio on the west to eastern New York on the east, and from north-central New York on the north to northern Tennessee on the south. Its thickness ranges from 0 feet (ft) where it pinches out to the west to as much as 700 ft in its eastern extent. Within the Broadtop synclinorium, the thickness of the Marcellus Shale ranges from 250 to 565 ft. Although stratigraphic complexities have been documented, a significant range in thickness most likely is because of tectonic thickening from folds and thrust faults. Outcrop studies in the Valley and Ridge and Appalachian Plateaus provinces illustrate the challenges of interpreting the relation of third-order faults, folds, and “disturbed” zones to the regional tectonic framework. Recent field work within the Valley and Ridge province determined that significant faulting and intraformational deformation are present within the Marcellus Shale at the outcrop scale. In an attempt to determine if this scale of deformation is detectable with conventional wireline logs, petrophysical properties (primarily mineralogy and porosity) were measured by interpretation of gamma-ray and bulk-density logs. The results of performing a statistical correlation of wireline logs from nine wells indicated that there are discontinuities within the Millboro Shale (undifferentiated Marcellus Shale and Mahantango Formation) where there are significant thickness differences between wells. Also, some intervals likely contain mineralogy that makes these zones more prone to layer-shortening cleavage duplexes. The Correlator program proved to be a useful tool in a region of contractional deformation.

Prediction of the presence of insulin resistance using general health checkup data in Japanese employees with metabolic risk factors.

PubMed

Takahara, Mitsuyoshi; Katakami, Naoto; Kaneto, Hideaki; Noguchi, Midori; Shimomura, Iichiro

2014-01-01

The aim of the current study was to develop a predictive model of insulin resistance using general health checkup data in Japanese employees with one or more metabolic risk factors. We used a database of 846 Japanese employees with one or more metabolic risk factors who underwent general health checkup and a 75-g oral glucose tolerance test (OGTT). Logistic regression models were developed to predict existing insulin resistance evaluated using the Matsuda index. The predictive performance of these models was assessed using the C statistic. The C statistics of body mass index (BMI), waist circumference and their combined use were 0.743, 0.732 and 0.749, with no significant differences. The multivariate backward selection model, in which BMI, the levels of plasma glucose, high-density lipoprotein (HDL) cholesterol, log-transformed triglycerides and log-transformed alanine aminotransferase and hypertension under treatment remained, had a C statistic of 0.816, with a significant difference compared to the combined use of BMI and waist circumference (p＜0.01). The C statistic was not significantly reduced when the levels of log-transformed triglycerides and log-transformed alanine aminotransferase and hypertension under treatment were simultaneously excluded from the multivariate model (p=0.14). On the other hand, further exclusion of any of the remaining three variables significantly reduced the C statistic (all p＜0.01). When predicting the presence of insulin resistance using general health checkup data in Japanese employees with metabolic risk factors, it is important to take into consideration the BMI and fasting plasma glucose and HDL cholesterol levels.

Borehole techniques identifying subsurface chimney heights in loose ground-some experiences above underground nuclear explosions

USGS Publications Warehouse

Carroll, R.D.; Lacomb, J.W.

1993-01-01

The location of the subsurface top of the chimney formed by the collapse of the cavity resulting from an underground nuclear explosion is examined at five sites at the Nevada Test Site. The chimneys were investigated by drilling, coring, geophysical logging (density, gamma-ray, caliper), and seismic velocity surveys. The identification of the top of the chimney can be complicated by chimney termination in friable volcanic rock of relatively high porosity. The presence of an apical void in three of the five cases is confirmed as the chimney horizon by coincidence with anomalies observed in coring, caliper and gamma-ray logging (two cases), seismic velocity, and drilling. In the two cases where an apical void is not present, several of these techniques yield anomalies at identical horizons, however, the exact depth of chimney penetration is subject to some degree of uncertainty. This is due chiefly to the extent to which core recovery and seismic velocity may be affected by perturbations in the tuff above the chimney due to the explosion and collapse. The data suggest, however, that the depth uncertainty may be only of the order of 10 m if several indicators are available. Of all indicators, core recovery and seismic velocity indicate anomalous horizons in every case. Because radiation products associated with the explosion are contained within the immediate vicinity of the cavity, gamma-ray logs are generally not diagnostic of chimney penetration. In no case is the denisty log indicative of the presence of the chimney. ?? 1993.

Growth and inactivation of Salmonella enterica and Listeria monocytogenes in broth and validation in ground pork meat during simulated home storage abusive temperature and home pan-frying

PubMed Central

Wang, Xiang; Lahou, Evy; De Boeck, Elien; Devlieghere, Frank; Geeraerd, Annemie; Uyttendaele, Mieke

2015-01-01

Ground pork meat with natural microbiota and inoculated with low initial densities (1–10 or 10–100 CFU/g) of Salmonella enterica or Listeria monocytogenes was stored under abusive temperature at 10°C and thermally treated by a simulated home pan-frying procedure. The growth and inactivation characteristics were also evaluated in broth. In ground pork meat, the population of S. enterica increased by less than one log after 12-days of storage at 10°C, whereas L. monocytogenes increased by 2.3 to 2.8 log units. No unusual intrinsic heat resistance of the pathogens was noted when tested in broth at 60°C although shoulders were observed on the inactivation curves of L. monocytogenes. After growth of S. enterica and L. monocytogenes at 10°C for 5 days to levels of 1.95 log CFU/g and 3.10 log CFU/g, respectively, in ground pork meat, their inactivation in the burger subjected to a simulated home pan-frying was studied. After thermal treatment S. enterica was undetectable but L. monocytogenes was recovered in three out of six of the 25 g burger samples. Overall, the present study shows that data on growth and inactivation of broths are indicative but may underestimate as well as overestimate behavior of pathogens and thus need confirmation in food matrix conditions to assess food safety in reasonably foreseen abusive conditions of storage and usual home pan-frying of meat burgers in Belgium. PMID:26579079

Inactivation and injury assessment of Escherichia coli during solar and photocatalytic disinfection in LDPE bags.

PubMed

Dunlop, P S M; Ciavola, M; Rizzo, L; Byrne, J A

2011-11-01

Solar disinfection (SODIS) of Escherichia coli suspensions in low-density polyethylene bag reactors was investigated as a low-cost disinfection method suitable for application in developing countries. The efficiency of a range of SODIS reactor configurations was examined (single skin (SS), double skin, black-backed single skin, silver-backed single skin (SBSS) and composite-backed single skin) using E. coli suspended in model and real surface water. Titanium dioxide was added to the reactors to improve the efficiency of the SODIS process. The effect of turbidity was also assessed. In addition to viable counts, E. coli injury was characterised through spread-plate analysis using selective and non-selective media. The optimal reactor configuration was determined to be the SBSS bag (t(50)=9.0min) demonstrating the importance of UVA photons, as opposed to infrared in the SODIS disinfection mechanism. Complete inactivation (6.5-log) was achieved in the presence of turbidity (50NTU) using the SBSS bag within 180min simulated solar exposure. The addition of titanium dioxide (0.025gL(-1)) significantly enhanced E. coli inactivation in the SS reactor, with 6-log inactivation observed within 90min simulated solar exposure. During the early stages of both SODIS and photocatalytic disinfection, injured E. coli were detected; however, irreversible injury was caused and re-growth was not observed. Experiments under solar conditions were undertaken with total inactivation (6.5-log) observed in the SS reactor within 240min, incomplete inactivation (4-log) was observed in SODIS bottles exposed to the same solar conditions. Copyright © 2011 Elsevier Ltd. All rights reserved.

Association between hormones and metabolic syndrome in older Italian men.

PubMed

Maggio, Marcello; Lauretani, Fulvio; Ceda, Gian Paolo; Bandinelli, Stefania; Basaria, Shehzad; Ble, Alessandro; Egan, Josephine; Paolisso, Giuseppe; Najjar, Samer; Jeffrey Metter, E; Valenti, Giorgio; Guralnik, Jack M; Ferrucci, Luigi

2006-12-01

To determine whether low levels of testosterone, sex hormone binding globulin (SHBG), insulin-like growth factor-1 (IGF-1), and dehydroepiandrosterone sulfate (DHEAS) and high levels of cortisol and leptin would be associated with metabolic syndrome (MS). Cross-sectional. Population-based sample of older Italian men. Four hundred fifty-two men aged 65 and older enrolled in the Invecchiare in Chianti (InCHIANTI) study. Complete data on testosterone, cortisol, DHEAS, SHBG, fasting insulin, IGF-1 and leptin. MS was defined according to Adult Treatment Panel III criteria. MS was present in 73 men (15.8% of the sample). After adjusting for confounders, total testosterone (P < .05) and log (SHBG) (P < .001) were inversely associated, whereas log (leptin) was positively associated with MS (P < .001). Independent of age, log (SHBG) was positively associated with high-density lipoprotein cholesterol (P < .05) and negatively associated with abdominal obesity (P < .001) and triglycerides (P < .001). Log (leptin) was significantly associated with each component of MS. Cortisol, DHEAS, free and bioavailable testosterone, and IGF-1 were not associated with MS. Having three or more hormones in the lower (for hormones lower in MS) or the upper (for hormones higher in MS) quartile was associated with three times the risk of being affected by MS (odds ratio = 2.8, 95% confidence interval = 1.3-6.9) (P = .005), compared with not having this condition. Total testosterone and SHBG are negatively and leptin is positively associated with MS in older men. Whether specific patterns of hormonal dysregulation predict the development of MS should be tested in longitudinal studies.

Statistical analysis of variability properties of the Kepler blazar W2R 1926+42

NASA Astrophysics Data System (ADS)

Li, Yutong; Hu, Shaoming; Wiita, Paul J.; Gupta, Alok C.

2018-07-01

We analysed Kepler light curves of the blazar W2R 1926+42 that provided nearly continuous coverage from quarter 11 to quarter 17 (589 d between 2011 and 2013) and examined some of their flux variability properties. We investigate the possibility that the light curve is dominated by a large number of individual flares and adopt exponential rise and decay models to investigate the symmetry properties of flares. We found that those variations of W2R 1926+42 are predominantly asymmetric with weak tendencies towards positive asymmetry (rapid rise and slow decay). The durations (D) and the amplitudes (F0) of flares can be fit with lognormal distributions. The energy (E) of each flare is also estimated for the first time. There are positive correlations between logD and logE with a slope of 1.36, and between logF0 and logE with a slope of 1.12. Lomb-Scargle periodograms are used to estimate the power spectral density shape. It is well described by a power law with an index ranging between -1.1 and -1.5. The sizes of the emission regions, R, are estimated to be in the range of 1.1 × 1015-6.6 × 1016cm. The flare asymmetry is difficult to explain by a light travel time effect but may be caused by differences between the time-scales for acceleration and dissipation of high-energy particles in the relativistic jet. A jet-in-jet model could also produce the observed lognormal distributions.

Effect of selective logging on genetic diversity and gene flow in Cariniana legalis sampled from a cacao agroforestry system.

PubMed

Leal, J B; Santos, R P; Gaiotto, F A

2014-01-28

The fragments of the Atlantic Forest of southern Bahia have a long history of intense logging and selective cutting. Some tree species, such as jequitibá rosa (Cariniana legalis), have experienced a reduction in their populations with respect to both area and density. To evaluate the possible effects of selective logging on genetic diversity, gene flow, and spatial genetic structure, 51 C. legalis individuals were sampled, representing the total remaining population from the cacao agroforestry system. A total of 120 alleles were observed from the 11 microsatellite loci analyzed. The average observed heterozygosity (0.486) was less than the expected heterozygosity (0.721), indicating a loss of genetic diversity in this population. A high fixation index (FIS = 0.325) was found, which is possibly due to a reduction in population size, resulting in increased mating among relatives. The maximum (1055 m) and minimum (0.095 m) distances traveled by pollen or seeds were inferred based on paternity tests. We found 36.84% of unique parents among all sampled seedlings. The progenitors of the remaining seedlings (63.16%) were most likely out of the sampled area. Positive and significant spatial genetic structure was identified in this population among classes 10 to 30 m away with an average coancestry coefficient between pairs of individuals of 0.12. These results suggest that the agroforestry system of cacao cultivation is contributing to maintaining levels of diversity and gene flow in the studied population, thus minimizing the effects of selective logging.

Structural and Sequence Stratigraphic Analysis of the Onshore Nile Delta, Egypt.

NASA Astrophysics Data System (ADS)

Barakat, Moataz; Dominik, Wilhelm

2010-05-01

The Nile Delta is considered the earliest known delta in the world. It was already described by Herodotus in the 5th Century AC. Nowadays; the Nile Delta is an emerging giant gas province in the Middle East with proven gas reserves which have more than doubled in size in the last years. The Nile Delta basin contains a thick sedimentary sequence inferred to extend from Jurassic to recent time. Structural styles and depositional environments varied during this period. Facies architecture and sequence stratigraphy of the Nile Delta are resolved using seismic stratigraphy based on (2D seismic lines) including synthetic seismograms and tying in well log data. Synthetic seismograms were constructed using sonic and density logs. The combination of structural interpretation and sequence stratigraphy of the development of the basin was resolved. Seven chrono-stratigraphic boundaries have been identified and correlated on seismic and well log data. Several unconformity boundaries also identified on seismic lines range from angular to disconformity type. Furthermore, time structure maps, velocity maps, depth structure maps as well as Isopach maps were constructed using seismic lines and log data. Several structural features were identified: normal faults, growth faults, listric faults, secondary antithetic faults and large rotated fault blocks of manly Miocene age. In some cases minor rollover structures could be identified. Sedimentary features such as paleo-channels were distinctively recognized. Typical Sequence stratigraphic features such as incised valley, clinoforms, topsets, offlaps and onlaps are identified and traced on the seismic lines allowing a good insight into sequence stratigraphic history of the Nile Delta most especially in the Miocene to Pliocene clastic sedimentary succession.

Simulation of flight maneuver-load distributions by utilizing stationary, non-Gaussian random load histories

NASA Technical Reports Server (NTRS)

Leybold, H. A.

1971-01-01

Random numbers were generated with the aid of a digital computer and transformed such that the probability density function of a discrete random load history composed of these random numbers had one of the following non-Gaussian distributions: Poisson, binomial, log-normal, Weibull, and exponential. The resulting random load histories were analyzed to determine their peak statistics and were compared with cumulative peak maneuver-load distributions for fighter and transport aircraft in flight.

Effect of packaging materials on the chemical composition and microbiological quality of edible mushroom (Pleurotus ostreatus) grown on cassava peels.

PubMed

Ajayi, Oluwakemi; Obadina, Adewale; Idowu, Micheal; Adegunwa, Mojisola; Kajihausa, Olatundun; Sanni, Lateef; Asagbra, Yemisi; Ashiru, Bolanle; Tomlins, Keith

2015-07-01

Edible fungi such as mushrooms are highly perishable and deteriorate few days after harvest due to its high moisture content and inability to maintain their physiological status. In this study, the effect of packaging materials on the nutritional composition of mushroom cultivated from cassava peels was investigated. Mushroom samples were dried at 50°C in a cabinet dryer for 8 h. The dried mushroom samples packaged in four different packaging materials; high density polyethylene (HDPE), polypropylene (PP), laminated aluminum foil (LAF), high density polyethylene under vacuum (HDPEV) were stored at freezing (0°C) temperatures for 12 weeks. Samples were collected at 2-week intervals and analyzed for proximate composition (carbohydrate, protein, fat, fiber, ash, moisture), mineral content (calcium, potassium), vitamin C content, and microbiological qualities (total aerobic count, Pseudomonal count, Coliform count, Staphylococcal count, Salmonella count) using the standard laboratory procedures. Carbohydrate, protein, fat content of dried mushrooms packaged in HDPE at freezing temperature ranged from 45.2% to 53.5%, 18.0% to 20.3%, and 3.2% to 4.3%, while mushrooms in polypropylene ranged from 45.2% to 53.5%, 18.5% to 20.3%, 2.6% to 4.3%. Carbohydrate, protein, fat of mushroom in LAF ranged from 47.8% to 53.5%, 17.3% to 20.3%, and 3.3% to 4.3%, respectively, while carbohydrate, protein, fat of mushroom in HDPEV ranged from 51.1% to 53.5%, 19.5% to 20.3%, and 3.5% to 4.3%. Microbiological analysis showed that total aerobic count, Pseudomonal count, and Staphyloccocal count of dried mushroom ranged from 2.3 to 3.8 log cfu/g, 0.6 to 1.1 log cfu/g, and 0.4 to 0.5 log cfu/g, respectively. In conclusion, dried mushroom in HDPE packaged under vacuum at freezing temperature retained the nutritional constituents than those packaged with other packaging materials.

Nasopharyngeal bacterial load as a marker for rapid and easy diagnosis of invasive pneumococcal disease in children from Mozambique

PubMed Central

Lanaspa, Miguel; Henares, Desiree; Perez-Arguello, Amaresh; Madrid, Lola; Balcells, Reyes; Acacio, Sozinho; Andres-Franch, Maria; Marcos, Maria Angeles; Valero-Rello, Ana

2017-01-01

Background Current diagnostic methods for detection of Streptococcus pneumoniae in children with suspected invasive pneumococcal disease have limitations of accuracy, timeliness, and patient convenience. This study aimed to determine the performance of pneumococcal load quantified with a real-time polymerase-chain reaction in nasopharyngeal samples to diagnose invasive pneumococcal disease in children. Methods Matched case-control study of patients <5 years of age with invasive pneumococcal disease admitted to the Manhiça District Hospital (Mozambique) and asymptomatic controls recruited in different periods between 2006 and 2014. Cases were confirmed by a positive bacterial culture for S. pneumoniae in blood or cerebrospinal fluid. Nasopharyngeal aspirates were collected from cases and controls and pneumococcal density was quantified by lytA real-time polymerase-chain reaction. Results Thirty cases (median age 12.8 months) and sixty controls (median age 11.7 months) were enrolled and 70% of them were male. Nasopharyngeal pneumococcal carriage was high in both groups: 28/30 (93.3%) for cases vs. 53/60 (88.3%) for controls (p = 0.71). Mean nasopharyngeal pneumococcal load was identified as a marker for invasive pneumococcal disease (7.0 log10 copies/mL in cases vs. 5.8 log10 copies/mL in controls, p<0.001) and showed good discriminatory power (AUC-ROC: 82.1%, 95% CI 72.5%-91.8%). A colonization density of 6.5 log10 copies/mL was determined as the optimal cut-off value to distinguish cases from controls (sensitivity 75.0%, specificity 73.6%). Conclusion Use of non-invasive nasopharyngeal aspirates coupled with rapid and accurate quantification of pneumococcal load by real-time polymerase chain reaction has the potential to become a useful surrogate marker for early diagnosis of invasive pneumococcal disease in children. PMID:28910402

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnston, Ryne C.; Zhou, Jing; Smith, Jeremy C.

In redox processes in complex transition metal-containing species are often intimately associated with changes in ligand protonation states and metal coordination number. Moreover, a major challenge is therefore to develop consistent computational approaches for computing pH-dependent redox and ligand dissociation properties of organometallic species. Reduction of the Co center in the vitamin B12 derivative aquacobalamin can be accompanied by ligand dissociation, protonation, or both, making these properties difficult to compute accurately. We examine this challenge here by using density functional theory and continuum solvation to compute Co ligand binding equilibrium constants (Kon/off), pKas and reduction potentials for models of aquacobalaminmore » in aqueous solution. We consider two models for cobalamin ligand coordination: the first follows the hexa, penta, tetra coordination scheme for Co III, Co II, and Co I species, respectively, and the second model features saturation of each vacant axial coordination site on Co II and Co I species with a single, explicit water molecule to maintain six directly interacting ligands or water molecules in each oxidation state. Comparing these two coordination schemes in combination with five dispersion-corrected density functionals, we find that the accuracy of the computed properties is largely independent of the scheme used, but including only a continuum representation of the solvent yields marginally better results than saturating the first solvation shell around Co throughout. PBE performs best, displaying balanced accuracy and superior performance overall, with RMS errors of 80 mV for seven reduction potentials, 2.0 log units for five pK as and 2.3 log units for two log K on/off values for the aquacobalamin system. Furthermore, we find that the BP86 functional commonly used in corrinoid studies suffers from erratic behavior and inaccurate descriptions of Co axial ligand binding, leading to substantial errors in predicted pK as and K on/off values. Finally, these findings demonstrate the effectiveness of the present approach for computing electrochemical and thermodynamic properties of a complex transition metal-containing cofactor.« less

Comparison of fundus autofluorescence with photopic and scotopic fine matrix mapping in patients with retinitis pigmentosa: 4- to 8-year follow-up.

PubMed

Robson, Anthony G; Lenassi, Eva; Saihan, Zubin; Luong, Vy A; Fitzke, Fred W; Holder, Graham E; Webster, Andrew R

2012-09-14

To assess the significance and evolution of parafoveal rings of high-density fundus autofluorescence (AF) in 12 patients with retinitis pigmentosa (RP). Twelve patients with autosomal recessive RP or Usher syndrome type 2 were ascertained who had a parafoveal ring of high-density AF and a visual acuity of 20/30 or better at baseline. Photopic and scotopic fine matrix mapping (FMM) were performed to test sensitivity across the macula. AF imaging and FMM were repeated after 4 to 8 years and optical coherence tomography (OCT) performed. The size of the AF ring reduced over time and disappeared in one subject. Photopic thresholds were normal over the fovea; thresholds were elevated by 0.6 log units over the ring and by 1.2 log units external to the ring at baseline and differed by less than 0.1 log unit at follow-up. Mild photopic losses close to the internal edge of the ring were detected at baseline or follow-up in all. Mean scotopic thresholds over parafoveal areas within the ring were markedly elevated in 8 of 10 at baseline and were severely elevated in 9 of 11 at follow-up. The eccentricity of the inner edge of the AF ring corresponded closely with the lateral extent of the inner segment ellipsoid band in the OCT image. Ring constriction was largely coincident with progressive centripetal photopic threshold elevation led by worsening of rod photoreceptor function. The rate of constriction differed across patients, and a ring may reach a critical minimum before disappearing, at which stage central visual loss occurs. The structural and functional changes associated with rings of increased autofluorescence confirm that they provide an objective index of macular involvement and may aid the management of RP patients and the monitoring of future treatment efficacy.

Effect of packaging materials on the chemical composition and microbiological quality of edible mushroom (Pleurotus ostreatus) grown on cassava peels

PubMed Central

Ajayi, Oluwakemi; Obadina, Adewale; Idowu, Micheal; Adegunwa, Mojisola; Kajihausa, Olatundun; Sanni, Lateef; Asagbra, Yemisi; Ashiru, Bolanle; Tomlins, Keith

2015-01-01

Edible fungi such as mushrooms are highly perishable and deteriorate few days after harvest due to its high moisture content and inability to maintain their physiological status. In this study, the effect of packaging materials on the nutritional composition of mushroom cultivated from cassava peels was investigated. Mushroom samples were dried at 50°C in a cabinet dryer for 8 h. The dried mushroom samples packaged in four different packaging materials; high density polyethylene (HDPE), polypropylene (PP), laminated aluminum foil (LAF), high density polyethylene under vacuum (HDPEV) were stored at freezing (0°C) temperatures for 12 weeks. Samples were collected at 2-week intervals and analyzed for proximate composition (carbohydrate, protein, fat, fiber, ash, moisture), mineral content (calcium, potassium), vitamin C content, and microbiological qualities (total aerobic count, Pseudomonal count, Coliform count, Staphylococcal count, Salmonella count) using the standard laboratory procedures. Carbohydrate, protein, fat content of dried mushrooms packaged in HDPE at freezing temperature ranged from 45.2% to 53.5%, 18.0% to 20.3%, and 3.2% to 4.3%, while mushrooms in polypropylene ranged from 45.2% to 53.5%, 18.5% to 20.3%, 2.6% to 4.3%. Carbohydrate, protein, fat of mushroom in LAF ranged from 47.8% to 53.5%, 17.3% to 20.3%, and 3.3% to 4.3%, respectively, while carbohydrate, protein, fat of mushroom in HDPEV ranged from 51.1% to 53.5%, 19.5% to 20.3%, and 3.5% to 4.3%. Microbiological analysis showed that total aerobic count, Pseudomonal count, and Staphyloccocal count of dried mushroom ranged from 2.3 to 3.8 log cfu/g, 0.6 to 1.1 log cfu/g, and 0.4 to 0.5 log cfu/g, respectively. In conclusion, dried mushroom in HDPE packaged under vacuum at freezing temperature retained the nutritional constituents than those packaged with other packaging materials. PMID:26288720

Density functional theory study on aqueous aluminum-fluoride complexes: exploration of the intrinsic relationship between water-exchange rate constants and structural parameters for monomer aluminum complexes.

PubMed

Jin, Xiaoyan; Qian, Zhaosheng; Lu, Bangmei; Yang, Wenjing; Bi, Shuping

2011-01-01

Density functional theory (DFT) calculation is carried out to investigate the structures, (19)F and (27)Al NMR chemical shifts of aqueous Al-F complexes and their water-exchange reactions. The following investigations are performed in this paper: (1) the microscopic properties of typical aqueous Al-F complexes are obtained at the level of B3LYP/6-311+G**. Al-OH(2) bond lengths increase with F(-) replacing inner-sphere H(2)O progressively, indicating labilizing effect of F(-) ligand. The Al-OH(2) distance trans to fluoride is longer than other Al-OH(2) distance, accounting for trans effect of F(-) ligand. (19)F and (27)Al NMR chemical shifts are calculated using GIAO method at the HF/6-311+G** level relative to F(H(2)O)(6)(-) and Al(H(2)O)(6)(3+) references, respectively. The results are consistent with available experimental values; (2) the dissociative (D) activated mechanism is observed by modeling water-exchange reaction for [Al(H(2)O)(6-i)F(i)]((3-i)+) (i = 1-4). The activation energy barriers are found to decrease with increasing F(-) substitution, which is in line with experimental rate constants (k(ex)). The log k(ex) of AlF(3)(H(2)O)(3)(0) and AlF(4)(H(2)O)(2)(-) are predicted by three ways. The results indicate that the correlation between log k(ex) and Al-O bond length as well as the given transmission coefficient allows experimental rate constants to be predicted, whereas the correlation between log k(ex) and activation free energy is poor; (3) the environmental significance of this work is elucidated by the extension toward three fields, that is, polyaluminum system, monomer Al-organic system and other metal ions system with high charge-to-radius ratio.

Quantifying long-term changes in carbon stocks and forest structure from Amazon forest degradation

NASA Astrophysics Data System (ADS)

Rappaport, Danielle I.; Morton, Douglas C.; Longo, Marcos; Keller, Michael; Dubayah, Ralph; Nara dos-Santos, Maiza

2018-06-01

Despite sustained declines in Amazon deforestation, forest degradation from logging and fire continues to threaten carbon stocks, habitat, and biodiversity in frontier forests along the Amazon arc of deforestation. Limited data on the magnitude of carbon losses and rates of carbon recovery following forest degradation have hindered carbon accounting efforts and contributed to incomplete national reporting to reduce emissions from deforestation and forest degradation (REDD+). We combined annual time series of Landsat imagery and high-density airborne lidar data to characterize the variability, magnitude, and persistence of Amazon forest degradation impacts on aboveground carbon density (ACD) and canopy structure. On average, degraded forests contained 45.1% of the carbon stocks in intact forests, and differences persisted even after 15 years of regrowth. In comparison to logging, understory fires resulted in the largest and longest-lasting differences in ACD. Heterogeneity in burned forest structure varied by fire severity and frequency. Forests with a history of one, two, and three or more fires retained only 54.4%, 25.2%, and 7.6% of intact ACD, respectively, when measured after a year of regrowth. Unlike the additive impact of successive fires, selective logging before burning did not explain additional variability in modeled ACD loss and recovery of burned forests. Airborne lidar also provides quantitative measures of habitat structure that can aid the estimation of co-benefits of avoided degradation. Notably, forest carbon stocks recovered faster than attributes of canopy structure that are critical for biodiversity in tropical forests, including the abundance of tall trees. We provide the first comprehensive look-up table of emissions factors for specific degradation pathways at standard reporting intervals in the Amazon. Estimated carbon loss and recovery trajectories provide an important foundation for assessing the long-term contributions from forest degradation to regional carbon cycling and advance our understanding of the current state of frontier forests.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thakur, Gautam

A data-driven realistic design and evalua- tion of vehicular mobility has been particularly chal- lenging due to a lack of large-scale real-world mea- surements in the research community. Current research methodologies rely on articial scenarios, random con- nectivity, and use small and biased samples. In this pa- per, we perform a combined study to learn the struc- ture and connectivity of urban streets and modeling and characterization of vehicular trac densities on them. Our dataset is a collection of more than 222 thousand routes and 25 million vehicular mobility images from 1091 online web cameras located in six dierent re-more » gions of the world. Our results centered around four major observations: i. study shows that driving routes and visiting locations of regions demonstrate power-law distribution, indicating a planned or recently designed road infrastructure; ii. we represent regions by network graphs in which nodes are camera locations and edges are urban streets that connect the nodes. Such represen- tation exhibits small world properties with short path lengths and large clustering coecient; iii. trac densi- ties show 80% temporal correlation during several hours of a day; iv. modeling trac densities against known theoretical distributions show less than 5% deviation for heavy-trailed models such as log-logistic and log- gamma distributions. We believe this work will provide a much-needed contribution to the research community for design and evaluation of future vehicular networks and smart cities.« less

Dechlorination kinetics of TCE at toxic TCE concentrations: Assessment of different models.

PubMed

Haest, P J; Springael, D; Smolders, E

2010-01-01

The reductive dechlorination of trichloroethene (TCE) in a TCE source zone can be self-inhibited by TCE toxicity. A study was set up to examine the toxicity of TCE in terms of species specific degradation kinetics and microbial growth and to evaluate models that describe this self-inhibition. A batch experiment was performed using the TCE dechlorinating KB-1 culture at initial TCE concentrations ranging from 0.04mM to saturation (8.4mM). Biodegradation activity was highest at 0.3mM TCE and no activity was found at concentrations from 4 to 8mM. Species specific TCE and cis-DCE (cis-dichloroethene) degradation rates and Dehalococcoides numbers were modeled with Monod kinetics combined with either Haldane inhibition or a log-logistic dose-response inhibition on these rates. The log-logistic toxicity model appeared the most appropriate model and predicts that the species specific degradation activities are reduced by a factor 2 at about 1mM TCE, respectively cis-DCE. However, the model showed that the inhibitive effects on the time for TCE to ethene degradation are a complex function of degradation kinetics and the initial cell densities of the dechlorinating species. Our analysis suggests that the self-inhibition on biodegradation cannot be predicted by a single concentration threshold without information on the cell densities.

Exact Scheffé-type confidence intervals for output from groundwater flow models: 1. Use of hydrogeologic information

USGS Publications Warehouse

Cooley, Richard L.

1993-01-01

A new method is developed to efficiently compute exact Scheffé-type confidence intervals for output (or other function of parameters) g(β) derived from a groundwater flow model. The method is general in that parameter uncertainty can be specified by any statistical distribution having a log probability density function (log pdf) that can be expanded in a Taylor series. However, for this study parameter uncertainty is specified by a statistical multivariate beta distribution that incorporates hydrogeologic information in the form of the investigator's best estimates of parameters and a grouping of random variables representing possible parameter values so that each group is defined by maximum and minimum bounds and an ordering according to increasing value. The new method forms the confidence intervals from maximum and minimum limits of g(β) on a contour of a linear combination of (1) the quadratic form for the parameters used by Cooley and Vecchia (1987) and (2) the log pdf for the multivariate beta distribution. Three example problems are used to compare characteristics of the confidence intervals for hydraulic head obtained using different weights for the linear combination. Different weights generally produced similar confidence intervals, whereas the method of Cooley and Vecchia (1987) often produced much larger confidence intervals.

Comprehensive Interpretation of the Laboratory Experiments Results to Construct Model of the Polish Shale Gas Rocks

NASA Astrophysics Data System (ADS)

Jarzyna, Jadwiga A.; Krakowska, Paulina I.; Puskarczyk, Edyta; Wawrzyniak-Guz, Kamila; Zych, Marcin

2018-03-01

More than 70 rock samples from so-called sweet spots, i.e. the Ordovician Sa Formation and Silurian Ja Member of Pa Formation from the Baltic Basin (North Poland) were examined in the laboratory to determine bulk and grain density, total and effective/dynamic porosity, absolute permeability, pore diameters size, total surface area, and natural radioactivity. Results of the pyrolysis, i.e., TOC (Total Organic Carbon) together with S1 and S2 - parameters used to determine the hydrocarbon generation potential of rocks, were also considered. Elemental composition from chemical analyses and mineral composition from XRD measurements were also included. SCAL analysis, NMR experiments, Pressure Decay Permeability measurements together with water immersion porosimetry and adsorption/ desorption of nitrogen vapors method were carried out along with the comprehensive interpretation of the outcomes. Simple and multiple linear statistical regressions were used to recognize mutual relationships between parameters. Observed correlations and in some cases big dispersion of data and discrepancies in the property values obtained from different methods were the basis for building shale gas rock model for well logging interpretation. The model was verified by the result of the Monte Carlo modelling of spectral neutron-gamma log response in comparison with GEM log results.

Changes in biomarkers of bone turnover in an aripiprazole add-on or switching study.

PubMed

Lodhi, Rohit J; Masand, Salaj; Malik, Amna; Shivakumar, Kuppuswami; McAllister, Victoria D M; O'Keane, Veronica; Young, Leah C; Heald, Adrian H; Sherwood, Roy A; Aitchison, Katherine J

2016-02-01

The association between mental illness and osteoporosis and fractures is particularly pronounced in psychotic disorders. Antipsychotic use has previously been described to affect bone density. A 52-week follow-up of patients switched to aripiprazole or with aripiprazole added on, conducting a specific analysis of markers of bone turnover: urinary NTX (a biomarker of bone resorption) and serum BSAP (a biomarker of bone formation). Baseline and serial measurements of bone markers NTX, BSAP and of hormones prolactin, oestrogen and testosterone were done at weeks 0 and 1, 2, 6, 12, 26 and 52, respectively. NTX concentration reduced over time but this did not reach significance in the whole group (log-NTX: β=-0.0012, p=0.142). For BSAP the addition of or replacement with aripiprazole produced a significant reduction (log-BSAP: β=-0.00039, p=0.002). Analysis with prolactin similarly showed a significant reduction (log-prolactin: β=-0.0024, p<0.001); other hormones did not change significantly. Sensitivity analysis to compare the switchers to aripiprazole versus the "add-on" showed that the former group had a significant reduction in NTX. We found that switching to aripiprazole was associated with changes in molecular biomarkers of bone resorption, indicating a more favourable profile for bone health. Copyright © 2015 Elsevier B.V. All rights reserved.

Fast Radio Bursts’ Recipes for the Distributions of Dispersion Measures, Flux Densities, and Fluences

NASA Astrophysics Data System (ADS)

Niino, Yuu

2018-05-01

We investigate how the statistical properties of dispersion measure (DM) and apparent flux density/fluence of (nonrepeating) fast radio bursts (FRBs) are determined by unknown cosmic rate density history [ρ FRB(z)] and luminosity function (LF) of the transient events. We predict the distributions of DMs, flux densities, and fluences of FRBs taking account of the variation of the receiver efficiency within its beam, using analytical models of ρ FRB(z) and LF. Comparing the predictions with the observations, we show that the cumulative distribution of apparent fluences suggests that FRBs originate at cosmological distances and ρ FRB increases with redshift resembling the cosmic star formation history (CSFH). We also show that an LF model with a bright-end cutoff at log10 L ν (erg s‑1 Hz‑1) ∼ 34 are favored to reproduce the observed DM distribution if ρ FRB(z) ∝ CSFH, although the statistical significance of the constraints obtained with the current size of the observed sample is not high. Finally, we find that the correlation between DM and flux density of FRBs is potentially a powerful tool to distinguish whether FRBs are at cosmological distances or in the local universe more robustly with future observations.

High-resolution gamma ray attenuation density measurements on mining exploration drill cores, including cut cores

NASA Astrophysics Data System (ADS)

Ross, P.-S.; Bourke, A.

2017-01-01

Physical property measurements are increasingly important in mining exploration. For density determinations on rocks, one method applicable on exploration drill cores relies on gamma ray attenuation. This non-destructive method is ideal because each measurement takes only 10 s, making it suitable for high-resolution logging. However calibration has been problematic. In this paper we present new empirical, site-specific correction equations for whole NQ and BQ cores. The corrections force back the gamma densities to the "true" values established by the immersion method. For the NQ core caliber, the density range extends to high values (massive pyrite, 5 g/cm3) and the correction is thought to be very robust. We also present additional empirical correction factors for cut cores which take into account the missing material. These "cut core correction factors", which are not site-specific, were established by making gamma density measurements on truncated aluminum cylinders of various residual thicknesses. Finally we show two examples of application for the Abitibi Greenstone Belt in Canada. The gamma ray attenuation measurement system is part of a multi-sensor core logger which also determines magnetic susceptibility, geochemistry and mineralogy on rock cores, and performs line-scan imaging.

Average snowcover density values in Eastern Alps mountain

NASA Astrophysics Data System (ADS)

Valt, M.; Moro, D.

2009-04-01

The Italian Avalanche Warning Services monitor the snow cover characteristics through networks evenly distributed all over the alpine chain. Measurements of snow stratigraphy and density are very frequently performed with sampling rates of 1 -2 times per week. Snow cover density values are used to compute the dimensions of the building roofs as well as to design avalanche barriers. Based on the measured snow densities the Electricity Board can predict the amount of water resources deriving from snow melt in high relieves drainage basins. In this work it was possible to compute characteristic density values of the snow cover in the Eastern Alps using the information contained in the database from the ARPA (Agenzia Regionale Protezione Ambiente)-Centro Valanghe di Arabba, and Ufficio Valanghe- Udine. Among the other things, this database includes 15 years of stratigraphic measurements. More than 6,000 snow stratigraphic logs were analysed, in order to derive typical values as for geographical area, altitude, exposure, snow cover thickness and season. Computed values were compared to those established by the current Italian laws. Eventually, experts identified and evaluated the correlations between the seasonal variations of the average snow density and the variations related to the snowfall rate in the period 1994-2008 in the Eastern Alps mountain range

Metaheuristic optimization approaches to predict shear-wave velocity from conventional well logs in sandstone and carbonate case studies

NASA Astrophysics Data System (ADS)

Emami Niri, Mohammad; Amiri Kolajoobi, Rasool; Khodaiy Arbat, Mohammad; Shahbazi Raz, Mahdi

2018-06-01

Seismic wave velocities, along with petrophysical data, provide valuable information during the exploration and development stages of oil and gas fields. The compressional-wave velocity (VP ) is acquired using conventional acoustic logging tools in many drilled wells. But the shear-wave velocity (VS ) is recorded using advanced logging tools only in a limited number of wells, mainly because of the high operational costs. In addition, laboratory measurements of seismic velocities on core samples are expensive and time consuming. So, alternative methods are often used to estimate VS . Heretofore, several empirical correlations that predict VS by using well logging measurements and petrophysical data such as VP , porosity and density are proposed. However, these empirical relations can only be used in limited cases. The use of intelligent systems and optimization algorithms are inexpensive, fast and efficient approaches for predicting VS. In this study, in addition to the widely used Greenberg–Castagna empirical method, we implement three relatively recently developed metaheuristic algorithms to construct linear and nonlinear models for predicting VS : teaching–learning based optimization, imperialist competitive and artificial bee colony algorithms. We demonstrate the applicability and performance of these algorithms to predict Vs using conventional well logs in two field data examples, a sandstone formation from an offshore oil field and a carbonate formation from an onshore oil field. We compared the estimated VS using each of the employed metaheuristic approaches with observed VS and also with those predicted by Greenberg–Castagna relations. The results indicate that, for both sandstone and carbonate case studies, all three implemented metaheuristic algorithms are more efficient and reliable than the empirical correlation to predict VS . The results also demonstrate that in both sandstone and carbonate case studies, the performance of an artificial bee colony algorithm in VS prediction is slightly higher than two other alternative employed approaches.

Log (TG)/HDL-C ratio as a predictor of decreased islet beta cell function in patients with type 2 diabetes: 6-year cohort study.

PubMed

Zhou, Meicen; Li, Zengyi; Min, Rui; Dong, Yaxiu; Sun, Qi; Li, Yuxiu

2015-09-01

The aim of the present study was to explore whether the triglyceride to high density lipoprotein cholesterol ratio [log (TG)/HDL-C] and peripheral blood leukocytes DNA telomere length could predict future islet beta cell function decreased in Chinese type 2 diabetes mellitus (T2DM) during a 6-year cohort. Sixty T2DM patients (without insulin treatment at baseline) were included in the 6-year cohort study. Peripheral blood leukocytes DNA telomere length, HbA1c, blood lipid profile, fatty fat acid, glucose, insulin and C peptide (3 h after a mixed meal) were determined. Delta C peptide area under curve (Delta CP AUC) was used to reflect change in beta cell secretion function (Delta CP AUC = baseline CP AUC - CP AUC after 6 years). Subjects were divided into slow decrease of beta cell function group (Delta CP AUCslow group) and fast decrease group (Delta CP AUCfast group) according to median of Delta CP AUC. Baseline demographic characteristics, clinical variables between two groups were compared. Correlations between baseline data and Delta CP AUC were analyzed. Baseline log (TG)/HDL-C was positively correlated with Delta CP AUC (r = 0.306, P = 0.027); log (TG)/HDL-C in Delta CP AUCfast group was higher than that in Delta CP AUCslow group (0.103 ± 0.033 vs 0.083 ± 0.030, P = 0.027). There was no significant difference in DNA telomere length between the two groups. Change in DNA telomere length over 6 years was not significantly correlated with baseline blood lipid. In Chinese T2DM patients, high baseline log (TG)/HDL-C ratio predicts fast progression of islet beta cell dysfunction. It may be a simple index to predict progression speed of islet beta cell dysfunction. © 2014 Ruijin Hospital, Shanghai Jiaotong University School of Medicine and Wiley Publishing Asia Pty Ltd.

Core-Log-Seismic Integrative Study of a Subduction Zone Megasplay Fault -An Example from the Nobeoka Thrust, Shimanto Belt, Southwest Japan

NASA Astrophysics Data System (ADS)

Hamahashi, M.; Tsuji, T.; Saito, S.; Tanikawa, W.; Hamada, Y.; Hashimoto, Y.; Kimura, G.

2016-12-01

Investigating the mechanical properties and deformation patterns of megathrusts in subduction zones is important to understand the generation of large earthquakes. The Nobeoka Thrust, a fossilized megasplay fault in Kyushu Shimanto Belt, southwest Japan, exposes foliated fault rocks that were formed under the temperature range of 180-350° (Kondo et al., 2005). During the Nobeoka Thrust Drilling Project (2011), core samples and geophysical logging data were obtained recovering a continuous distribution of multiple fault zones, which provide the opportunity to examine their structure and physical properties in various scales (Hamahashi et al., 2013; 2015). By performing logging data analysis, discrete sample physical property measurements, and synthetic modeling of seismic reflections along the Nobeoka Thrust, we conducted core-log-seismic integrative study to characterize the effects of damage zone architecture and structural anisotropy towards the physical properties of the megasplay. A clear contrast in physical properties across the main fault core and surrounding damage zones were identified, where the fault rocks preserve the porosity of 4.8% in the hanging wall and 7.6% in the footwall, and P-wave velocity of 4.8 km/s and 4.2 km/s, respectively. Multiple sandstone-rich- and shale-rich damage zones were found from the drilled cores, in which velocity decreases significantly in the brecciated zones. The internal structure of these foliated fault rocks consist of heterogeneous lithology and texture, and velocity anisotropy ranges 1-18% (P-wave) and 1.5-80% (S-wave), affected by structural dip angle, foliation density, and sandstone/mudstone ratio. To evaluate the fault properties at the seismogenic depth, we developed velocity/earth models and synthetic modeling of seismic reflection using acoustic logs across the thrust and parameterized lithological and structural elements in the identified multiple damage zones.

Update on the X-Ray Variability Plane for Active Galactic Nuclei: The Role of the Obscuration

NASA Astrophysics Data System (ADS)

González-Martín, Omaira

2018-05-01

Scaling relations are the most powerful astrophysical tools to set constraints on the physical mechanisms of astronomical sources and to infer properties that cannot be accessed directly. We reinvestigate here one of these scaling relations in active galactic nuclei (AGNs); the so-called X-ray variability plane (or mass–luminosity timescale relation). This relation links the power-spectral density (PSD) break frequency with the super-massive black hole (SMBH) mass and the bolometric luminosity. We used the available XMM-Newton observations of a sample of 22 AGNs to study the PSD and spectra in short segments within each observation. This allows us to report for the first time that the PSD break frequency varies for each object, showing variations in 19 out of the 22 AGNs analyzed. Our analysis of the variability plane confirms the relation between the break frequency and the SMBH mass and finds that the obscuration along the line of sight N H (or the variations on the obscuration using its standard deviation, ΔN H) is also a required parameter, at least for the range of frequencies analyzed here (∼ 3 × {10}-5-5× {10}-2 {Hz}). We constrain a new variability plane of the following form: {log}({ν }Break})=(-0.589 +/- 0.005) {log}({{{M}}}BH})+(0.10+/- 0.01) {log}({{{N}}}{{H}})-(1.5+/- 0.3) (or {log}({ν }Break})=(-0.549+/- 0.009) {log}({{{M}}}BH}) +(0.56+/- 0.06) {{Δ }}{N}{{H}}+(0.19+/- 0.08)). The X-ray variability plane found by McHardy et al. is roughly recovered when we use unobscured segments. We speculate that this behavior is well explained if most of the reported frequencies are related to inner clouds (within 1 pc), following Kepler orbits under the gravitational field of the SMBH.

Invasion of drilling mud into gas-hydrate-bearing sediments. Part I: effect of drilling mud properties

NASA Astrophysics Data System (ADS)

Ning, Fulong; Zhang, Keni; Wu, Nengyou; Zhang, Ling; Li, Gang; Jiang, Guosheng; Yu, Yibing; Liu, Li; Qin, Yinghong

2013-06-01

To our knowledge, this study is the first to perform a numerical simulation and analysis of the dynamic behaviour of drilling mud invasion into oceanic gas-hydrate-bearing sediment (GHBS) and to consider the effects of such an invasion on borehole stability and the reliability of well logging. As a case study, the simulation background sets up the conditions of mud temperature over hydrate equilibrium temperature and overbalanced drilling, considering the first Chinese expedition to drill gas hydrate (GMGS-1). The results show that dissociating gas may form secondary hydrates in the sediment around borehole by the combined effects of increased pore pressure (caused by mud invasion and flow resistance), endothermic cooling that accompanies hydrate dissociation compounded by the Joule-Thompson effect and the lagged effect of heat transfer in sediments. The secondary hydrate ring around the borehole may be more highly saturated than the in situ sediment. Mud invasion in GHBS is a dynamic process of thermal, fluid (mud invasion), chemical (hydrate dissociation and reformation) and mechanical couplings. All of these factors interact and influence the pore pressure, flow ability, saturation of fluid and hydrates, mechanical parameters and electrical properties of sediments around the borehole, thereby having a strong effect on borehole stability and the results of well logging. The effect is particularly clear in the borehole SH7 of GMGS-1 project. The borehole collapse and resistivity distortion were observed during practical drilling and wireline logging operations in borehole SH7 of the GMGS-1.mud density (i.e. the corresponding borehole pressure), temperature and salinity have a marked influence on the dynamics of mud invasion and on hydrate stability. Therefore, perhaps well-logging distortion caused by mud invasion, hydrate dissociation and reformation should be considered for identifying and evaluating gas hydrate reservoirs. And some suitable drilling measurements need to be adopted to reduce the risk of well-logging distortion and borehole instability.

The origins of post-starburst galaxies at z < 0.05

NASA Astrophysics Data System (ADS)

Pawlik, M. M.; Taj Aldeen, L.; Wild, V.; Mendez-Abreu, J.; Lahén, N.; Johansson, P. H.; Jimenez, N.; Lucas, W.; Zheng, Y.; Walcher, C. J.; Rowlands, K.

2018-06-01

Post-starburst galaxies can be identified via the presence of prominent Hydrogen Balmer absorption lines in their spectra. We present a comprehensive study of the origin of strong Balmer lines in a volume-limited sample of 189 galaxies with 0.01 < z < 0.05, log ({M}_{\\star }/{M}_{⊙})>9.5 and projected axial ratio b/a > 0.32. We explore their structural properties, environments, emission lines, and star formation histories, and compare them to control samples of star-forming and quiescent galaxies, and simulated galaxy mergers. Excluding contaminants, in which the strong Balmer lines are most likely caused by dust-star geometry, we find evidence for three different pathways through the post-starburst phase, with most events occurring in intermediate-density environments: (1) a significant disruptive event, such as a gas-rich major merger, causing a starburst and growth of a spheroidal component, followed by quenching of the star formation (70 per cent of post-starburst galaxies at 9.5< log ({M}_{\\star}/{M}_{⊙})<10.5 and 60 per cent at log ({M}_{\\star}/{M}_{⊙})>10.5); (2) at 9.5< log ({M}_{\\star}/{M}_{⊙})<10.5, stochastic star formation in blue-sequence galaxies, causing a weak burst and subsequent return to the blue sequence (30 per cent); (3) at log ({M}_{\\star}/{M}_{⊙})>10.5, cyclic evolution of quiescent galaxies which gradually move towards the high-mass end of the red sequence through weak starbursts, possibly as a result of a merger with a smaller gas-rich companion (40 per cent). Our analysis suggests that active galactic nuclei (AGNs) are 'on' for 50 per cent of the duration of the post-starburst phase, meaning that traditional samples of post-starburst galaxies with strict emission-line cuts will be at least 50 per cent incomplete due to the exclusion of narrow-line AGNs.

Determinants of the Transmission Variation of Hand, Foot and Mouth Disease in China.

PubMed

Zhao, Jijun; Li, Xinmin

2016-01-01

Severe outbreaks of hand, foot and mouth disease (HFMD) have occurred in China for decades. Our understanding of the HFMD transmission process and its determinants is still limited. In this paper, factors that affect the local variation of HFMD transmission process were studied. Three classes of factors, including meteorological, demographic and public health intervention factors, were carefully selected and their effects on HFMD transmission were investigated with Pearson's correlation coefficient and multiple linear regression models. The determining factors for the variation of HFMD transmission were different for the southeastern and the northwestern regions of China. In the northwest, fadeouts occurred yearly, and the average age at infection and the fadeout were negatively correlated with the population density. In the southeast, HFMD transmission was governed by the combined effects of the birth rate, the relative humidity and the interaction of the Health System Performance and the log of the population density. When the Health System Performance was low, HFMD transmission increased with the population density, but when the Health System Performance was high, the better health performance counteracted the transmission increase due to the higher population density.

Formation MicroScanner (FMS) data and orbital cycle records: preliminary interpretation from the Asian Monsoon IODP Expedition 346

NASA Astrophysics Data System (ADS)

Johanna, Lofi; Grizel, Jimenez Soto; Ryuji, Tada; Murray Richard, W.; Alvarez Zarikian Carlos, A.; Martin, Ziegler

2015-04-01

Recently, IODP Expedition 346 (29 July-27 September 2013) drilled seven sites in in the marginal sea bordered by the Eurasian continent, the Korean Peninsula, and the Japanese Islands, as well as two closely spaced sites in the East China Sea. Expedition 346 was the first scientific drilling expedition ever to focus exclusively on the climate system in this region. During the expedition, the Formation MicroScanner (FMS) downhole logging tool was deployed, providing high-resolution electrical resistivity-based images of borehole walls. Features such as bedding, slump folding and bioturbation can be resolved. Here we analyze FMS image resistivity data collected at Site U1425 that extend back to the Miocene. Analysis allowed the recognition of several FMS intervals, with vertical extension ranging from several tens of centimeters to a few meters, with an apparent cyclicity. These FMS intervals correlate well with other downhole logs (Total Gamma Ray, Uranium, Thorium, Potassium and density). Conductive intervals generally correlate with low gamma ray and low density log values. Conversely, more resistive intervals generally correlate with higher values in the gamma ray and bulk density logs. This relationship can be interpreted in terms of the relative abundance of terrigenous clay/diatoms in the sediment. Clay has high K and Th contents and relatively higher density and lower porosity than higher diatom-rich sediment. Consequently, with the exception of sporadic ash and dolomite layers, conductive intervals in the FMS images tend to reflect intervals enriched in diatoms, whereas resistive intervals reflect relative high-terrigenous clay content. An apparent cyclic nature, with several orders of cycles on the FMS images, is locally clearly observed. The cyclic pattern consists of ~4-8 m thick resistive intervals alternating with conductive intervals, generally correlating in core with laminated (diatomite or carbonate rich) intervals. These conductive intervals often contain higher frequency, smaller scale interbedded layers. The transition between resistive and conductive intervals is marked by an intermediate level of medium conductivity in the FMS images, possibly indicating relative changes in productivity conditions. The FMS images have been interpreted in term of FMS facies (low, medium, high conductivity) and their thickness measured along a 100-m long interval since the late Miocene. Vertical changes in thickness of FMS facies are plotted vs. depth, and we propose an attempt of orbital tuning based on the Site U1425 preliminary age model. In the future, the FMS data will be compared to other proxies measured on cores, and physical and chemical properties of sediments such as color reflectance or XRF data. This research project is undertaken as part of IODP Expedition 346. IODP Expedition 346 Scientists: W.T. Anderson, M.-A. Bassetti, B.J. Brace, S.C. Clemens, G.R. Dickens, A.G. Dunlea, S.J. Gallagher, L.Giosan, M.H. da Costa Gurgel, A.C.G. Henderson, A.E. Holbourn, K. Ikehara, T. Irino, T. Itaki, A. Karasuda, C.W. Kinsley, Y. Kubota, G.S. Lee, K.E. Lee, C.I.C.D. Lopes, M. Saavedra Pellitero, L.C. Peterson, T. Sagawa, R.K. Singh, S. Sugisaki, S. Toucanne, S. Wan, C. Xuan, H. Zheng, C.H. Lee

Resource Assessment of Methane Hydrate in the Eastern Nankai Trough, Japan

NASA Astrophysics Data System (ADS)

Fujii, T.; Saeki, T.; Kobayashi, T.; Inamori, T.; Hayashi, M.; Takano, O.

2007-12-01

Resource assessment of methane hydrate (MH) in the eastern Nankai Trough was conducted through probabilistic approach using 2D/3D seismic survey data and drilling survey data from METI exploratory test wells 'Tokai-oki to Kumano-nada' [1, 2, 3]. We have extracted several prospective 'MH concentrated zones' [4] characterized by high resistivity in well log, strong seismic reflector, seismic high velocity, and turbidite deposit delineated by sedimentary facies analysis. The amount of methane gas contained in MH bearing layers was calculated using volumetric method for each zone. Each parameter, such as Gross Rock Volume (GRV), net-to-gross ratio (N/G), MH pore saturation (Sh), porosity, cage occupancy, and volume ratio was given as probabilistic distribution for Monte Carlo simulation, considering the uncertainly of these values. The GRV for each hydrate bearing zones was calculated from both strong seismic amplitude anomaly and velocity anomaly. Time-to-depth conversion was conducted using interval velocity derived from SVWD (Seismic Vision While Drilling). Risk factor was applied for the estimation of the GRV in 2D seismic area considering the uncertainty of seismic interpretation. The N/G was determined based on the relationship between LWD (Logging While Drilling) resistivity and grain size in zones with existing wells. 3ohm-m was used for typical cut off value to determine net intervals. Seismic facies map created by sequence stratigraphic approach [5] was also used for the determination of the N/G in zone without well controls. Porosity was estimated using density log, together with calibration by core analysis. The Sh was estimated by the combination of density log and NMR log (DMR method), together with the calibration by observed gas volume from onboard MH dissociation tests using PTCS (Pressure Temperature Core Sampler) [6]. The Sh in zone without well control was estimated using relationship between seismic P-wave interval velocity and Sh from NMR log at well location. Cage occupancy was determined to be around 0.95 by refereeing recent field observations. Total amount of methane gas in place contained in MH in the eastern Nankai Trough within survey area was estimated to be 40 tcf as Pmean value (10 tcf as P90 value, 82 tcf as P10 value). Total gas in place for MH concentrated zone was estimated to be 20 tcf (Half of total amount) as Pmean value. Sensitivity analysis indicated that the N/G and Sh have higher sensitivity than other parameters, and they are important for further detail analysis. This study was carried out as a part of Research Consortium for Methane Hydrate Resource in Japan (MH21). [1] Takahashi et al. (2005): Proc. Of 2005 OTC, 2-5 May, Houston, Texas, U.S.A. [2] Fujii et al. (2005): Proc. Of 5th ICGH, Trondheim, Norway, 974-979. [3] Tsuji et al. (2007): AAPG Special Publication (in press). [4] Saeki et al. (2007): Abst. of 2007 Technical Meeting of the JAPT, June 5-7, 2007, Tokyo, p49. [5] Takano et al. (2007): Abst. of 2007 Technical Meeting of the JAPT, June 5-7, 2007, Tokyo, p34. [6] Fujii et al. (2007): AAPG Special Publication (in press).

An integrated profile of natural fractures in gas-bearing shale complex (Pomerania, Poland): based on structural profiling of oriented core and borehole logging data.

NASA Astrophysics Data System (ADS)

Bobek, Kinga; Jarosiński, Marek; Stadtmuller, Marek; Pachytel, Radomir; Lis-Śledziona, Anita

2016-04-01

Natural fractures in gas-bearing shales has significant impact on reservoir stimulation and increase of exploitation. Density of natural fractures and their orientation in respect to the maximum horizontal stress are crucial for propagation of technological hydraulic fractures. Having access to continuous borehole core profile and modern geophysical logging from several wells in the Pomeranian part of the Early Paleozoic Baltic Basin (Poland) we were able to compare the consistency of structural interpretation of several data sets. Although, final aim of our research is to optimize the method of fracture network reconstruction on a reservoir scale, at a recent stage we were focused on quantitative characterization of tectonic structures in a direct vicinity of boreholes. The data we have, cover several hundred meters long profiles of boreholes from the Ordovician and Silurian shale complexes. Combining different sets of data we broaden the scale of observation from borehole core (5 cm radius), through XRMI scan of a borehole wall (10 cm radius), up to penetration of a signal of an acoustic dipole logging (several tens of cm range). At the borehole core we examined the natural tectonic structures and mechanically significant features, like: mineral veins, fractured veins, bare fractures, slickensides, fault zones, stylolites, bedding plane and mechanically contrasting layers. We have also noticed drilling-induced features like centerline fractures and core disking, controlled by a recent tectonic stress. We have measured the orientation of fractures, their size, aperture and spacing and also describe the character of veins and tried to determine the stress regime responsible for fault slippage and fracture propagation. Wide range of analyzed features allowed us to discriminate fracture sets and reconstruct tectonic evolution of the complex. The most typical for analyzed shale complexes are steep and vertical strata-bound fractures that create an orthogonal joint system, which is locally disturbed by small-scale faults and fractures, associated with them. For regular joints, observed on borehole core, we have calculated variation of mean height and area and volume of mineralization for veins. Fracture density variation reveals good correlation with lithological shale formations which are comparable with Consistent Mechanical Units differentiated based on detailed lithological profiling and geophysical data (see Pachytel et al., this issue).We have also proposed a new method of a rose diagram construction presenting strike of fractures taking into account their size and angular error bar in strike determination. Each fracture was weighted with its length or aperture and an angular error was included by blurring the less credible records. This allowed for more precise adjustment of fracture sets direction in comparison to conventional diagrams without weighting procedure. Recently, we are processing acoustic dipole logs for anisotropy analyses aiming in comparison with density of fracture sets. Our study, which is conducted in the frame of ShaleMech Project (within Blue Gas Program) is in progress, thus the presented results should be considered as preliminary.

Inoculation density is affecting growth conditions of Listeria monocytogenes on fresh cut lettuce.

PubMed

McManamon, Oisin; Scollard, Johann; Schmalenberger, Achim

2017-11-27

Listeria monocytogenes is a particular risk for the ready-to-eat food sector because of its ability to grow in various environmental conditions. In the literature, growth and survival of L. monocytogenes on food is tested using inoculation densities ranging from less than 10 2 to over 10 5  CFU g -1 . Inoculation densities on food have been rarely tested as a factor for growth. In this study, inoculation densities from 10 2 to 10 5 of L. monocytogenes were tested on iceberg lettuce (Lactuca sativa) in modified atmospheres and air in model packages at 4 and 8 °C to identify any potential inoculation density effects. On days 0, 2, 5 and 7, L. monocytogenes was extracted from the lettuce surface and enumerated via selective media. The resulting growth curves identified a significant inoculation density effect at 4 and 8 °C with significantly higher amounts of growth (1-2 logs) when lettuce was inoculated at 10 2  CFU g -1 as opposed to 10 4 and 10 5  CFU g -1 . In contrast, the use of different atmospheres had limited influence on growth of L. monocytogenes. In conclusion, greater emphasis on inoculation density of L. monocytogenes should be taken in inoculation experiments when confirmation of growth or the efficacies of growth inhibiting treatments are tested on ready-to-eat food such as lettuce.

Direct Laser Writing of Low-Density Interdigitated Foams for Plasma Drive Shaping [Direct Laser Writing of Low Density Nanostitched Foams for Plasma Drive Shaping

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oakdale, James S.; Smith, Raymond F.; Forien, Jean -Baptiste

Monolithic porous bulk materials have many promising applications ranging from energy storage and catalysis to high energy density physics. High resolution additive manufacturing techniques, such as direct laser writing via two photon polymerization (DLW-TPP), now enable the fabrication of highly porous microlattices with deterministic morphology control. In this work, DLW-TPP is used to print millimeter-sized foam reservoirs (down to 0.06 g cm –3) with tailored density-gradient profiles, where density is varied by over an order of magnitude (for instance from 0.6 to 0.06 g cm –3) along a length of <100 µm. Taking full advantage of this technology, however, ismore » a multiscale materials design problem that requires detailed understanding of how the different length scales, from the molecular level to the macroscopic dimensions, affect each other. The design of these 3D-printed foams is based on the brickwork arrangement of 100 × 100 × 16 µm 3 log-pile blocks constructed from sub-micrometer scale features. A block-to-block interdigitated stitching strategy is introduced for obtaining high density uniformity at all length scales. Lastly, these materials are used to shape plasma-piston drives during ramp-compression of targets under high energy density conditions created at the OMEGA Laser Facility.« less

Direct Laser Writing of Low-Density Interdigitated Foams for Plasma Drive Shaping [Direct Laser Writing of Low Density Nanostitched Foams for Plasma Drive Shaping

DOE PAGES

Oakdale, James S.; Smith, Raymond F.; Forien, Jean -Baptiste; ...

2017-09-27

Monolithic porous bulk materials have many promising applications ranging from energy storage and catalysis to high energy density physics. High resolution additive manufacturing techniques, such as direct laser writing via two photon polymerization (DLW-TPP), now enable the fabrication of highly porous microlattices with deterministic morphology control. In this work, DLW-TPP is used to print millimeter-sized foam reservoirs (down to 0.06 g cm –3) with tailored density-gradient profiles, where density is varied by over an order of magnitude (for instance from 0.6 to 0.06 g cm –3) along a length of <100 µm. Taking full advantage of this technology, however, ismore » a multiscale materials design problem that requires detailed understanding of how the different length scales, from the molecular level to the macroscopic dimensions, affect each other. The design of these 3D-printed foams is based on the brickwork arrangement of 100 × 100 × 16 µm 3 log-pile blocks constructed from sub-micrometer scale features. A block-to-block interdigitated stitching strategy is introduced for obtaining high density uniformity at all length scales. Lastly, these materials are used to shape plasma-piston drives during ramp-compression of targets under high energy density conditions created at the OMEGA Laser Facility.« less

Chromospheric evaporation flows and density changes deduced from Hinode/EIS during an M1.6 flare

NASA Astrophysics Data System (ADS)

Gömöry, P.; Veronig, A. M.; Su, Y.; Temmer, M.; Thalmann, J. K.

2016-04-01

Aims: We study the response of the solar atmosphere during a GOES M1.6 flare using spectroscopic and imaging observations. In particular, we examine the evolution of the mass flows and electron density together with the energy input derived from hard X-ray (HXR) in the context of chromospheric evaporation. Methods: We analyzed high-cadence sit-and-stare observations acquired with the Hinode/EIS spectrometer in the Fe xiii 202.044 Å (log T = 6.2) and Fe xvi 262.980 Å (log T = 6.4) spectral lines to derive temporal variations of the line intensity, Doppler shifts, and electron density during the flare. We combined these data with HXR measurements acquired with RHESSI to derive the energy input to the lower atmosphere by flare-accelerated electrons. Results: During the flare impulsive phase, we observe no significant flows in the cooler Fe xiii line but strong upflows, up to 80-150 km s-1, in the hotter Fe xvi line. The largest Doppler shifts observed in the Fe xvi line were co-temporal with the sharp intensity peak. The electron density obtained from a Fe xiii line pair ratio exhibited fast increase (within two minutes) from the pre-flare level of 5.01 × 109 cm-3 to 3.16 × 1010 cm-3 during the flare peak. The nonthermal energy flux density deposited from the coronal acceleration site to the lower atmospheric layers during the flare peak was found to be 1.34 × 1010 erg s-1 cm-2 for a low-energy cut-off that was estimated to be 16 keV. During the decline flare phase, we found a secondary intensity and density peak of lower amplitude that was preceded by upflows of ~15 km s-1 that were detected in both lines. The flare was also accompanied by a filament eruption that was partly captured by the EIS observations. We derived Doppler velocities of 250-300 km s-1 for the upflowing filament material. Conclusions: The spectroscopic results for the flare peak are consistent with the scenario of explosive chromospheric evaporation, although a comparatively low value of the nonthermal energy flux density was determined for this phase of the flare. This outcome is discussed in the context of recent hydrodynamic simulations. It provides observational evidence that the response of the atmospheric plasma strongly depends on the properties of the electron beams responsible for the heating, in particular the steepness of the energy distribution. The secondary peak of line intensity and electron density detected during the decline phase is interpreted as a signature of flare loops being filled by expanding hot material that is due to chromospheric evaporation. A movie is available at http://www.aanda.org

Estimating tropical-forest density profiles from multibaseline interferometric SAR

NASA Technical Reports Server (NTRS)

Treuhaft, Robert; Chapman, Bruce; dos Santos, Joao Roberto; Dutra, Luciano; Goncalves, Fabio; da Costa Freitas, Corina; Mura, Jose Claudio; de Alencastro Graca, Paulo Mauricio

2006-01-01

Vertical profiles of forest density are potentially robust indicators of forest biomass, fire susceptibility and ecosystem function. Tropical forests, which are among the most dense and complicated targets for remote sensing, contain about 45% of the world's biomass. Remote sensing of tropical forest structure is therefore an important component to global biomass and carbon monitoring. This paper shows preliminary results of a multibasline interfereomtric SAR (InSAR) experiment over primary, secondary, and selectively logged forests at La Selva Biological Station in Costa Rica. The profile shown results from inverse Fourier transforming 8 of the 18 baselines acquired. A profile is shown compared to lidar and field measurements. Results are highly preliminary and for qualitative assessment only. Parameter estimation will eventually replace Fourier inversion as the means to producing profiles.

A Randomized Multicenter Clinical Trial of Ultrathin Descemet Stripping Automated Endothelial Keratoplasty (DSAEK) versus DSAEK.

PubMed

Dickman, Mor M; Kruit, Pieter J; Remeijer, Lies; van Rooij, Jeroen; Van der Lelij, Allegonda; Wijdh, Robert H J; van den Biggelaar, Frank J H M; Berendschot, Tos T J M; Nuijts, Rudy M M A

2016-11-01

To compare visual acuity, refraction, endothelial cell density (ECD), and complications after Descemet stripping automated endothelial keratoplasty (DSAEK) and ultrathin DSAEK (UT-DSAEK). A multicenter, prospective, double-masked, randomized, controlled clinical trial. From 66 patients with irreversible corneal endothelial dysfunction dues to Fuchs' dystrophy who enrolled from 4 tertiary medical centers in the Netherlands, 66 eyes were studied. Participants were centrally randomized to undergo either UT-DSAEK or DSAEK, based on preoperative best spectacle-corrected visual acuity (BSCVA), recipient central corneal thickness, patient age, and recruitment center. Donor corneas were precut by a single cornea bank. Participants underwent ophthalmic examinations preoperatively and 3, 6, and 12 months after the operation, including manifest refraction, BSCVA using an Early Treatment Diabetic Retinopathy Study chart, and endothelium imaging. BSCVA 12 months postoperatively. Preoperative BSCVA did not differ between patients undergoing DSAEK (0.35 logarithm of the minimum angle of resolution [logMAR] [95% confidence interval {CI} 0.27-0.43]; n = 32) and UT-DSAEK (0.37 logMAR [95% CI 0.31-0.43]; n = 34; P = 0.8). BSCVA was significantly better after UT-DSAEK compared with that after DSAEK at 3 months (0.17 logMAR [95% CI 0.13-0.21], n = 31 vs. 0.28 logMAR [95% CI 0.23-0.33], n = 31; P = 0.001), 6 months (0.14 logMAR [95% CI 0.10-0.18], n = 30 vs. 0.24 logMAR [95% CI 0.20-0.28], n = 30; P = 0.002), and 12 months (0.13 logMAR [95% CI 0.09-0.17], n = 33 vs. 0.20 logMAR [95% CI 0.15-0.25], n = 29; P = 0.03). Refraction, ECD loss (40% at 3 months; P < 0.001), donor loss (DSAEK n = 2 vs. UT-DSAEK n = 3 [relative risk {RR} 1.4 {95% CI 0.24-7.5}; P = 0.7]), and graft dislocation (DSAEK n = 5 vs. UT-DSAEK n = 5 [RR 1.0 {95% CI 0.34-3.33}; P = 0.9]) did not differ between UT-DSAEK and DSAEK. Donor thickness was significantly thinner for UT-DSAEK (101 μm [95% CI 93-110 μm]; range 50-145 μm) than for DSAEK (209 μm [95% CI 196-222 μm]; range 147-289 μm; P < 0.001). This study indicates that compared with DSAEK, UT-DSAEK results in faster and better recovery of BSCVA with similar refractive outcomes, endothelial cell loss, and incidence of complications. Copyright © 2016 American Academy of Ophthalmology. Published by Elsevier Inc. All rights reserved.

The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles.

PubMed

Gămănuţ, Răzvan; Kennedy, Henry; Toroczkai, Zoltán; Ercsey-Ravasz, Mária; Van Essen, David C; Knoblauch, Kenneth; Burkhalter, Andreas

2018-02-07

The inter-areal wiring pattern of the mouse cerebral cortex was analyzed in relation to a refined parcellation of cortical areas. Twenty-seven retrograde tracer injections were made in 19 areas of a 47-area parcellation of the mouse neocortex. Flat mounts of the cortex and multiple histological markers enabled detailed counts of labeled neurons in individual areas. The observed log-normal distribution of connection weights to each cortical area spans 5 orders of magnitude and reveals a distinct connectivity profile for each area, analogous to that observed in macaques. The cortical network has a density of 97%, considerably higher than the 66% density reported in macaques. A weighted graph analysis reveals a similar global efficiency but weaker spatial clustering compared with that reported in macaques. The consistency, precision of the connectivity profile, density, and weighted graph analysis of the present data differ significantly from those obtained in earlier studies in the mouse. Copyright © 2017 Elsevier Inc. All rights reserved.

Preliminary gravity inversion model of Frenchman Flat Basin, Nevada Test Site, Nevada

USGS Publications Warehouse

Phelps, Geoffrey A.; Graham, Scott E.

2002-01-01

The depth of the basin beneath Frenchman Flat is estimated using a gravity inversion method. Gamma-gamma density logs from two wells in Frenchman Flat constrained the density profiles used to create the gravity inversion model. Three initial models were considered using data from one well, then a final model is proposed based on new information from the second well. The preferred model indicates that a northeast-trending oval-shaped basin underlies Frenchman Flat at least 2,100 m deep, with a maximum depth of 2,400 m at its northeast end. No major horst and graben structures are predicted. Sensitivity analysis of the model indicates that each parameter contributes the same magnitude change to the model, up to 30 meters change in depth for a 1% change in density, but some parameters affect a broader area of the basin. The horizontal resolution of the model was determined by examining the spacing between data stations, and was set to 500 square meters.

Star Formation in Galaxies at z ˜ 4-5 from the SMUVS Survey: A Clear Starburst/Main-sequence Bimodality for Hα Emitters on the SFR-M* Plane

NASA Astrophysics Data System (ADS)

Caputi, K. I.; Deshmukh, S.; Ashby, M. L. N.; Cowley, W. I.; Bisigello, L.; Fazio, G. G.; Fynbo, J. P. U.; Le Fèvre, O.; Milvang-Jensen, B.; Ilbert, O.

2017-11-01

We study a large galaxy sample from the Spitzer Matching Survey of the UltraVISTA ultra-deep Stripes (SMUVS) to search for sources with enhanced 3.6 μ {{m}} fluxes indicative of strong Hα emission at z=3.9{--}4.9. We find that the percentage of “Hα excess” sources reaches 37%-40% for galaxies with stellar masses {{log}}10({M}* /{M}⊙ )≈ 9{--}10 and decreases to < 20 % at {{log}}10({M}* /{M}⊙ )˜ 10.7. At higher stellar masses, however, the trend reverses, although this is likely due to active galactic nucleus contamination. We derive star formation rates (SFR) and specific SFR (sSFR) from the inferred Hα equivalent widths of our “Hα excess” galaxies. We show, for the first time, that the “Hα excess” galaxies clearly have a bimodal distribution on the SFR-M* plane: they lie on the main sequence of star formation (with {{log}}10({sSFR}/{{yr}}-1)< -8.05) or in a starburst cloud (with {{log}}10({sSFR}/{{yr}}-1)> -7.60). The latter contains ˜ 15 % of all the objects in our sample and accounts for > 50 % of the cosmic SFR density at z=3.9{--}4.9, for which we derive a robust lower limit of 0.066 {M}⊙ {{yr}}-1 {{Mpc}}-3. Finally, we identify an unusual > 50σ overdensity of z=3.9{--}4.9 galaxies within a 0.20× 0.20 arcmin2 region. We conclude that the SMUVS unique combination of area and depth at mid-IR wavelengths provides an unprecedented level of statistics and dynamic range that are fundamental to revealing new aspects of galaxy evolution in the young universe.