Using OMI Observations to Measure Aerosol Absorption of Biomass Burning Aerosols Above Clouds

NASA Technical Reports Server (NTRS)

Torres, Omar; Bhartia, P. K.; Jethva, Hiren

2011-01-01

The presence of absorbing aerosol layers above clouds is unambiguously detected by the TOMS/OMI UV Aerosol Index (AI) that uses satellite observations at two near-UV channels. A sensitivity study using radiative transfer calculations shows that the AI signal of resulting from the presence of aerosols above clouds is mainly driven by the aerosol absorption optical depth and the optical depth of the underlying cloud. Based on these results, an inversion algorithm has been developed to retrieve the aerosol optical depth (AOD) of aerosol layers above clouds. In this presentation we will discuss the sensitivity analysis, describe the retrieval approach, and present results of applications of the retrieval method to OMI observations over the South Atlantic Ocean. Preliminary error analyses, to be discussed, indicate that the AOD can be underestimated (up to -30%) or overestimated (up to 60%) depending on algorithmic assumptions.

How Choice of Depth Horizon Influences the Estimated Spatial Patterns and Global Magnitude of Ocean Carbon Export Flux

NASA Astrophysics Data System (ADS)

Palevsky, Hilary I.; Doney, Scott C.

2018-05-01

Estimated rates and efficiency of ocean carbon export flux are sensitive to differences in the depth horizons used to define export, which often vary across methodological approaches. We evaluate sinking particulate organic carbon (POC) flux rates and efficiency (e-ratios) in a global earth system model, using a range of commonly used depth horizons: the seasonal mixed layer depth, the particle compensation depth, the base of the euphotic zone, a fixed depth horizon of 100 m, and the maximum annual mixed layer depth. Within this single dynamically consistent model framework, global POC flux rates vary by 30% and global e-ratios by 21% across different depth horizon choices. Zonal variability in POC flux and e-ratio also depends on the export depth horizon due to pronounced influence of deep winter mixing in subpolar regions. Efforts to reconcile conflicting estimates of export need to account for these systematic discrepancies created by differing depth horizon choices.

Granular convection observed by magnetic resonance imaging.

PubMed

Ehrichs, E E; Jaeger, H M; Karczmar, G S; Knight, J B; Kuperman, V Y; Nagel, S R

1995-03-17

Vibrations in a granular material can spontaneously produce convection rolls reminiscent of those seen in fluids. Magnetic resonance imaging provides a sensitive and noninvasive probe for the detection of these convection currents, which have otherwise been difficult to observe. A magnetic resonance imaging study of convection in a column of poppy seeds yielded data about the detailed shape of the convection rolls and the depth dependence of the convection velocity. The velocity was found to decrease exponentially with depth; a simple model for this behavior is presented here.

Time domain diffuse Raman spectrometer based on a TCSPC camera for the depth analysis of diffusive media.

PubMed

Konugolu Venkata Sekar, S; Mosca, S; Tannert, S; Valentini, G; Martelli, F; Binzoni, T; Prokazov, Y; Turbin, E; Zuschratter, W; Erdmann, R; Pifferi, A

2018-05-01

We present a time domain diffuse Raman spectrometer for depth probing of highly scattering media. The system is based on, to the best of our knowledge, a novel time-correlated single-photon counting (TCSPC) camera that simultaneously acquires both spectral and temporal information of Raman photons. A dedicated non-contact probe was built, and time domain Raman measurements were performed on a tissue mimicking bilayer phantom. The fluorescence contamination of the Raman signal was eliminated by early time gating (0-212 ps) the Raman photons. Depth sensitivity is achieved by time gating Raman photons at different delays with a gate width of 106 ps. Importantly, the time domain can provide time-dependent depth sensitivity leading to a high contrast between two layers of Raman signal. As a result, an enhancement factor of 2170 was found for our bilayer phantom which is much higher than the values obtained by spatial offset Raman spectroscopy (SORS), frequency offset Raman spectroscopy (FORS), or hybrid FORS-SORS on a similar phantom.

Dosimetric characterization of a microDiamond detector in clinical scanned carbon ion beams.

PubMed

Marinelli, Marco; Prestopino, G; Verona, C; Verona-Rinati, G; Ciocca, M; Mirandola, A; Mairani, A; Raffaele, L; Magro, G

2015-04-01

To investigate for the first time the dosimetric properties of a new commercial synthetic diamond detector (PTW microDiamond) in high-energy scanned clinical carbon ion beams generated by a synchrotron at the CNAO facility. The detector response was evaluated in a water phantom with actively scanned carbon ion beams ranging from 115 to 380 MeV/u (30-250 mm Bragg peak depth in water). Homogeneous square fields of 3 × 3 and 6 × 6 cm(2) were used. Short- and medium-term (2 months) detector response stability, dependence on beam energy as well as ion type (carbon ions and protons), linearity with dose, and directional and dose-rate dependence were investigated. The depth dose curve of a 280 MeV/u carbon ion beam, scanned over a 3 × 3 cm(2) area, was measured with the microDiamond detector and compared to that measured using a PTW Advanced Markus ionization chamber, and also simulated using fluka Monte Carlo code. The detector response in two spread-out-Bragg-peaks (SOBPs), respectively, centered at 9 and 21 cm depths in water and calculated using the treatment planning system (TPS) used at CNAO, was measured. A negligible drift of detector sensitivity within the experimental session was seen, indicating that no detector preirradiation was needed. Short-term response reproducibility around 1% (1 standard deviation) was found. Only 2% maximum variation of microDiamond sensitivity was observed among all the evaluated proton and carbon ion beam energies. The detector response showed a good linear behavior. Detector sensitivity was found to be dose-rate independent, with a variation below 1.3% in the evaluated dose-rate range. A very good agreement between measured and simulated Bragg curves with both microDiamond and Advanced Markus chamber was found, showing a negligible LET dependence of the tested detector. A depth dose curve was also measured by positioning the microDiamond with its main axis oriented orthogonally to the beam direction. A strong distortion in Bragg peak measurement was observed, confirming manufacturer recommendation on avoiding such configuration. Very good results were obtained for SOBP measurements, with a difference below 1% between measured and TPS-calculated doses. The stability of detector sensitivity in the observation period was within the experimental uncertainty. Dosimetric characterization of a PTW microDiamond detector in high-energy scanned carbon ion beams was performed. The results of the present study showed that this detector is suitable for dosimetry of clinical carbon ion beams, with a negligible LET and dose-rate dependence.

Development and Evaluation of a Contrast Sensitivity Perimetry Test for Patients with Glaucoma

PubMed Central

Hot, Aliya; Dul, Mitchell W.; Swanson, William H.

2008-01-01

Purpose To design a contrast sensitivity perimetry (CSP) protocol that decreases variability in glaucomatous defects while maintaining good sensitivity to glaucomatous loss. Methods Twenty patients with glaucoma and 20 control subjects were tested with a CSP protocol implemented on a monitor-based testing station. In the protocol 26 locations were tested over the central visual field with Gabor patches with a peak spatial frequency of 0.4 cyc/deg and a two-dimensional spatial Gaussian envelope, with most of the energy concentrated within a 4° circular region. Threshold was estimated by a staircase method. Patients and 10 age-similar control subjects were also tested on conventional automated perimetry (CAP), with the 24−2 pattern with the SITA Standard testing strategy. The neuroretinal rim area of the patients was measured with a retinal tomograph (Retina Tomograph II [HRT]; Heidelberg Engineering, Heidelberg, Germany). A Bland-Altman analysis of agreement was used to assess test–retest variability, compare depth of defect shown by the two perimetric tests, and investigate the relations between contrast sensitivity and neuroretinal rim area. Results Variability showed less dependence on defect depth for CSP than for CAP (z = 9.3, P < 0.001). Defect depth was similar for CAP and CSP when averaged by quadrant (r = 0.26, P > 0.13). The relation between defect depth and rim area was more consistent with CSP than with CAP (z = 9, P < 0.001). Conclusions The implementation of CSP was successful in reducing test–retest variability in glaucomatous defects. CSP was in general agreement with CAP in terms of depth of defect and was in better agreement than CAP with HRT-determined rim area. PMID:18378580

Development and evaluation of a contrast sensitivity perimetry test for patients with glaucoma.

PubMed

Hot, Aliya; Dul, Mitchell W; Swanson, William H

2008-07-01

To design a contrast sensitivity perimetry (CSP) protocol that decreases variability in glaucomatous defects while maintaining good sensitivity to glaucomatous loss. Twenty patients with glaucoma and 20 control subjects were tested with a CSP protocol implemented on a monitor-based testing station. In the protocol 26 locations were tested over the central visual field with Gabor patches with a peak spatial frequency of 0.4 cyc/deg and a two-dimensional spatial Gaussian envelope, with most of the energy concentrated within a 4 degrees circular region. Threshold was estimated by a staircase method: Patients and 10 age-similar control subjects were also tested on conventional automated perimetry (CAP), with the 24-2 pattern with the SITA Standard testing strategy. The neuroretinal rim area of the patients was measured with a retinal tomograph (Retina Tomograph II [HRT]; Heidelberg Engineering, Heidelberg, Germany). A Bland-Altman analysis of agreement was used to assess test-retest variability, compare depth of defect shown by the two perimetric tests, and investigate the relations between contrast sensitivity and neuroretinal rim area. Variability showed less dependence on defect depth for CSP than for CAP (z = 9.3, P < 0.001). Defect depth was similar for CAP and CSP when averaged by quadrant (r = 0.26, P > 0.13). The relation between defect depth and rim area was more consistent with CSP than with CAP (z = 9, P < 0.001). The implementation of CSP was successful in reducing test-retest variability in glaucomatous defects. CSP was in general agreement with CAP in terms of depth of defect and was in better agreement than CAP with HRT-determined rim area.

An Improved Forwarding of Diverse Events with Mobile Sinks in Underwater Wireless Sensor Networks.

PubMed

Raza, Waseem; Arshad, Farzana; Ahmed, Imran; Abdul, Wadood; Ghouzali, Sanaa; Niaz, Iftikhar Azim; Javaid, Nadeem

2016-11-04

In this paper, a novel routing strategy to cater the energy consumption and delay sensitivity issues in deep underwater wireless sensor networks is proposed. This strategy is named as ESDR: Event Segregation based Delay sensitive Routing. In this strategy sensed events are segregated on the basis of their criticality and, are forwarded to their respective destinations based on forwarding functions. These functions depend on different routing metrics like: Signal Quality Index, Localization free Signal to Noise Ratio, Energy Cost Function and Depth Dependent Function. The problem of incomparable values of previously defined forwarding functions causes uneven delays in forwarding process. Hence forwarding functions are redefined to ensure their comparable values in different depth regions. Packet forwarding strategy is based on the event segregation approach which forwards one third of the generated events (delay sensitive) to surface sinks and two third events (normal events) are forwarded to mobile sinks. Motion of mobile sinks is influenced by the relative distribution of normal nodes. We have also incorporated two different mobility patterns named as; adaptive mobility and uniform mobility for mobile sinks. The later one is implemented for collecting the packets generated by the normal nodes. These improvements ensure optimum holding time, uniform delay and in-time reporting of delay sensitive events. This scheme is compared with the existing ones and outperforms the existing schemes in terms of network lifetime, delay and throughput.

Comparison of nine methods to estimate ear-canal stimulus levels

PubMed Central

Souza, Natalie N.; Dhar, Sumitrajit; Neely, Stephen T.; Siegel, Jonathan H.

2014-01-01

The reliability of nine measures of the stimulus level in the human ear canal was compared by measuring the sensitivity of behavioral hearing thresholds to changes in the depth of insertion of an otoacoustic emission probe. Four measures were the ear-canal pressure, the eardrum pressure estimated from it and the pressure measured in an ear simulator with and without compensation for insertion depth. The remaining five quantities were derived from the ear-canal pressure and the Thévenin-equivalent source characteristics of the probe: Forward pressure, initial forward pressure, the pressure transmitted into the middle ear, eardrum sound pressure estimated by summing the magnitudes of the forward and reverse pressure (integrated pressure) and absorbed power. Two sets of behavioral thresholds were measured in 26 subjects from 0.125 to 20 kHz, with the probe inserted at relatively deep and shallow positions in the ear canal. The greatest dependence on insertion depth was for transmitted pressure and absorbed power. The measures with the least dependence on insertion depth throughout the frequency range (best performance) included the depth-compensated simulator, eardrum, forward, and integrated pressures. Among these, forward pressure is advantageous because it quantifies stimulus phase. PMID:25324079

High-speed spectral domain optical coherence tomography using non-uniform fast Fourier transform

PubMed Central

Chan, Kenny K. H.; Tang, Shuo

2010-01-01

The useful imaging range in spectral domain optical coherence tomography (SD-OCT) is often limited by the depth dependent sensitivity fall-off. Processing SD-OCT data with the non-uniform fast Fourier transform (NFFT) can improve the sensitivity fall-off at maximum depth by greater than 5dB concurrently with a 30 fold decrease in processing time compared to the fast Fourier transform with cubic spline interpolation method. NFFT can also improve local signal to noise ratio (SNR) and reduce image artifacts introduced in post-processing. Combined with parallel processing, NFFT is shown to have the ability to process up to 90k A-lines per second. High-speed SD-OCT imaging is demonstrated at camera-limited 100 frames per second on an ex-vivo squid eye. PMID:21258551

Optimised frequency modulation for continuous-wave optical magnetic resonance sensing using nitrogen-vacancy ensembles.

PubMed

El-Ella, Haitham A R; Ahmadi, Sepehr; Wojciechowski, Adam M; Huck, Alexander; Andersen, Ulrik L

2017-06-26

Magnetometers based on ensembles of nitrogen-vacancy centres are a promising platform for continuously sensing static and low-frequency magnetic fields. Their combination with phase-sensitive (lock-in) detection creates a highly versatile sensor with a sensitivity that is proportional to the derivative of the optical magnetic resonance lock-in spectrum, which is in turn dependant on the lock-in modulation parameters. Here we study the dependence of the lock-in spectral slope on the modulation of the spin-driving microwave field. Given the presence of the intrinsic nitrogen hyperfine spin transitions, we experimentally show that when the ratio between the hyperfine linewidth and their separation is ≳ 1/4, square-wave based frequency modulation generates the steepest slope at modulation depths exceeding the separation of the hyperfine lines, compared to sine-wave based modulation. We formulate a model for calculating lock-in spectra which shows excellent agreement with our experiments, and which shows that an optimum slope is achieved when the linewidth/separation ratio is ≲ 1/4 and the modulation depth is less then the resonance linewidth, irrespective of the modulation function used.

Exploring the Surface Sensitivity of ToF-SIMS by Measuring the Implantation and Sampling Depths of Bin and C60 Ions in Organic Films

PubMed Central

Muramoto, Shin; Brison, Jeremy; Castner, David G.

2011-01-01

The surface sensitivity of Binq+ (n = 1, 3, 5, q = 1, 2) and C60q+ (q = 1, 2) primary ions in static time-of-flight secondary ion mass spectrometry (ToF-SIMS) experiments were investigated for molecular trehalose and polymeric tetraglyme organic films. Parameters related to surface sensitivity (impact crater depth, implantation depth, and molecular escape depths) were measured. Under static ToF-SIMS conditions (primary ion doses of 1 × 1012 ions/cm2), the 25 keV Bi1+ primary ions were the most surface sensitive with a molecular escape depth of 1.8 nm for protein films with tetraglyme overlayers, but they had the deepest implantation depth (~18 and 26 nm in trehalose and tetraglyme films, respectively). The 20 keV C60++ primary ions were the second most surface sensitive with a slightly larger molecular escape depth of 2.3 nm. The most important factor that determined the surface sensitivity of the primary ion was its impact crater depth, or the amount of surface erosion. The most surface sensitive primary ions, Bi1+ and C60++, created impact craters with depths of 0.3 and 1.0 nm, respectively, in tetraglyme films. In contrast, Bi5++ primary ions created impact craters with a depth of 1.8 nm in tetraglyme films and were the least surface sensitive with a molecular escape depth of 4.7 nm. PMID:22084828

High speed parallel spectral-domain OCT using spectrally encoded line-field illumination

NASA Astrophysics Data System (ADS)

Lee, Kye-Sung; Hur, Hwan; Bae, Ji Yong; Kim, I. Jong; Kim, Dong Uk; Nam, Ki-Hwan; Kim, Geon-Hee; Chang, Ki Soo

2018-01-01

We report parallel spectral-domain optical coherence tomography (OCT) at 500 000 A-scan/s. This is the highest-speed spectral-domain (SD) OCT system using a single line camera. Spectrally encoded line-field scanning is proposed to increase the imaging speed in SD-OCT effectively, and the tradeoff between speed, depth range, and sensitivity is demonstrated. We show that three imaging modes of 125k, 250k, and 500k A-scan/s can be simply switched according to the sample to be imaged considering the depth range and sensitivity. To demonstrate the biological imaging performance of the high-speed imaging modes of the spectrally encoded line-field OCT system, human skin and a whole leaf were imaged at the speed of 250k and 500k A-scan/s, respectively. In addition, there is no sensitivity dependence in the B-scan direction, which is implicit in line-field parallel OCT using line focusing of a Gaussian beam with a cylindrical lens.

Parallax-sensitive remapping of visual space in occipito-parietal alpha-band activity during whole-body motion

PubMed Central

Selen, L. P. J.; Medendorp, W. P.

2014-01-01

Despite the constantly changing retinal image due to eye, head, and body movements, we are able to maintain a stable representation of the visual environment. Various studies on retinal image shifts caused by saccades have suggested that occipital and parietal areas correct for these perturbations by a gaze-centered remapping of the neural image. However, such a uniform, rotational, remapping mechanism cannot work during translations when objects shift on the retina in a more complex, depth-dependent fashion due to motion parallax. Here we tested whether the brain's activity patterns show parallax-sensitive remapping of remembered visual space during whole-body motion. Under continuous recording of electroencephalography (EEG), we passively translated human subjects while they had to remember the location of a world-fixed visual target, briefly presented in front of or behind the eyes' fixation point prior to the motion. Using a psychometric approach we assessed the quality of the memory update, which had to be made based on vestibular feedback and other extraretinal motion cues. All subjects showed a variable amount of parallax-sensitive updating errors, i.e., the direction of the errors depended on the depth of the target relative to fixation. The EEG recordings show a neural correlate of this parallax-sensitive remapping in the alpha-band power at occipito-parietal electrodes. At parietal electrodes, the strength of these alpha-band modulations correlated significantly with updating performance. These results suggest that alpha-band oscillatory activity reflects the time-varying updating of gaze-centered spatial information during parallax-sensitive remapping during whole-body motion. PMID:25505108

Lithologic Control on the Form of Soil Mantled Hillslopes

NASA Astrophysics Data System (ADS)

Johnstone, S. A.; Hilley, G. E.

2014-12-01

Slopes on steady-state soil-mantled hillslopes tend to increase downslope in a way that balances local transport capacity with the sediment supplied from progressively larger source areas. Most predictions for the transport of soil depend purely on topographic slope and constants. Thus, soil mantled topography should evolve toward smooth forms in which soils act to buffer these forms from the underlying geologic structure. However, in the Gabilan Mesa, CA, oscillations in the slope of soil-mantled hillslopes mirror oscillations in the underlying stratigraphy. Using field measurements of stratigraphy and soil depths, topographic analysis, and numerical modeling, we demonstrate that variations in rock type can impact the form of soil-mantled hillslopes. Specifically, variations in the properties of underlying rocks may yield different soil thicknesses. Balancing transport rates across these variations in thickness requires slopes to change when soil transport depends on both soil thickness and slope. A compilation of published data on the variation in activity with depth of various transport processes provides the basis for a geomorphic transport law (GTL) that generalizes the depth dependence of various transport processes. While this GTL is explicitly depth dependent, it is also capable of describing situations in which hillslope transport is relatively insensitive to variations in thickness and therefore essentially equivalent to existing formulations. We use dimensional analysis and numerical modeling to demonstrate the conditions under which transport on soil mantled slopes, and consequently topographic forms, may be sensitive to variations in soil thickness and therefore lithology.

7 CFR 1710.302 - Financial forecasts-power supply borrowers.

Code of Federal Regulations, 2013 CFR

2013-01-01

... facilities; (3) Provide an in-depth analysis of the regional markets for power if loan feasibility depends to any degree on a borrower's ability to sell surplus power while its system loads grow to meet the... sensitivity analysis if required by RUS pursuant to § 1710.300(d)(5). (e) The projections shall be coordinated...

When Models and Observations Collide: Journeying towards an Integrated Snow Depth Product

NASA Astrophysics Data System (ADS)

Webster, M.; Petty, A.; Boisvert, L.; Markus, T.; Kurtz, N. T.; Kwok, R.; Perovich, D. K.

2017-12-01

Knowledge of snow depth is essential for assessing changes in sea ice mass balance due to snow's insulating and reflective properties. In remote sensing applications, the accuracy of sea ice thickness retrievals from altimetry crucially depends on snow depth. Despite the need for snow depth data, we currently lack continuous observations that capture the basin-scale snow depth distribution and its seasonal evolution. Recent in situ and remote sensing observations are sparse in space and time, and contain uncertainties, caveats, and/or biases that often require careful interpretation. Likewise, using model output for remote sensing applications is limited due to uncertainties in atmospheric forcing and different treatments of snow processes. Here, we summarize our efforts in bringing observational and model data together to develop an approach for an integrated snow depth product. We start with a snow budget model and incrementally incorporate snow processes to determine the effects on snow depth and to assess model sensitivity. We discuss lessons learned in model-observation integration and ideas for potential improvements to the treatment of snow in models.

Profiling defect depth in composite materials using thermal imaging NDE

NASA Astrophysics Data System (ADS)

Obeidat, Omar; Yu, Qiuye; Han, Xiaoyan

2018-04-01

Sonic Infrared (IR) NDE, is a relatively new NDE technology; it has been demonstrated as a reliable and sensitive method to detect defects. SIR uses ultrasonic excitation with IR imaging to detect defects and flaws in the structures being inspected. An IR camera captures infrared radiation from the target for a period of time covering the ultrasound pulse. This period of time may be much longer than the pulse depending on the defect depth and the thermal properties of the materials. With the increasing deployment of composites in modern aerospace and automobile structures, fast, wide-area and reliable NDE methods are necessary. Impact damage is one of the major concerns in modern composites. Damage can occur at a certain depth without any visual indication on the surface. Defect depth information can influence maintenance decisions. Depth profiling relies on the time delays in the captured image sequence. We'll present our work on the defect depth profiling by using the temporal information of IR images. An analytical model is introduced to describe heat diffusion from subsurface defects in composite materials. Depth profiling using peak time is introduced as well.

Tree density and permafrost thaw depth influence water limitations on stomatal conductance in Siberian Arctic boreal forests

NASA Astrophysics Data System (ADS)

Kropp, H.; Loranty, M. M.; Natali, S.; Kholodov, A. L.; Alexander, H. D.; Zimov, N.

2017-12-01

Boreal forests may experience increased water stress under global climate change as rising air temperatures increase evaporative demand and decrease soil moisture. Increases in plant water stress can decrease stomatal conductance, and ultimately, decrease primary productivity. A large portion of boreal forests are located in Siberia, and are dominated by deciduous needleleaf trees, Larix spp. We investigated the variability and drivers of canopy stomatal conductance in upland Larix stands with different stand density that arose from differing fire severity. Our measurements focus on an open canopy stand with low tree density and deep permafrost thaw depth, and a closed canopy stand with high tree density and shallow permafrost thaw depth. We measured canopy stomatal conductance, soil moisture, and micrometeorological variables. Our results demonstrate that canopy stomatal conductance was significantly lower in the closed canopy stand with a significantly higher sensitivity to increases in atmospheric evaporative demand. Canopy stomatal conductance in both stands was tightly coupled to precipitation that occurred over the previous week; however, the closed canopy stand showed a significantly greater sensitivity to increases in precipitation compared to the open canopy stand. Differences in access to deep versus shallow soil moisture and the physical characteristics of the soil profile likely contribute to differences in sensitivity to precipitation between the two stands. Our results indicate that Larix primary productivity may be highly sensitive to changes in evaporative demand and soil moisture that can result of global climate change. However, the effect of increasing air temperatures and changes in precipitation will differ significantly depending on stand density, thaw depth, and the hydraulic characteristics of the soil profile.

Confocal spectroscopic imaging measurements of depth dependent hydration dynamics in human skin in-vivo

NASA Astrophysics Data System (ADS)

Behm, P.; Hashemi, M.; Hoppe, S.; Wessel, S.; Hagens, R.; Jaspers, S.; Wenck, H.; Rübhausen, M.

2017-11-01

We present confocal spectroscopic imaging measurements applied to in-vivo studies to determine the depth dependent hydration profiles of human skin. The observed spectroscopic signal covers the spectral range from 810 nm to 2100 nm allowing to probe relevant absorption signals that can be associated with e.g. lipid and water-absorption bands. We employ a spectrally sensitive autofocus mechanism that allows an ultrafast focusing of the measurement spot on the skin and subsequently probes the evolution of the absorption bands as a function of depth. We determine the change of the water concentration in m%. The water concentration follows a sigmoidal behavior with an increase of the water content of about 70% within 5 μm in a depth of about 14 μm. We have applied our technique to study the hydration dynamics of skin before and after treatment with different concentrations of glycerol indicating that an increase of the glycerol concentration leads to an enhanced water concentration in the stratum corneum. Moreover, in contrast to traditional corneometry we have found that the application of Aluminium Chlorohydrate has no impact to the hydration of skin.

Comparison of Climatological Planetary Boundary Layer Depth Estimates Using the GEOS-5 AGCM

NASA Technical Reports Server (NTRS)

Mcgrath-Spangler, Erica Lynn; Molod, Andrea M.

2014-01-01

Planetary boundary layer (PBL) processes, including those influencing the PBL depth, control many aspects of weather and climate and accurate models of these processes are important for forecasting changes in the future. However, evaluation of model estimates of PBL depth are difficult because no consensus on PBL depth definition currently exists and various methods for estimating this parameter can give results that differ by hundreds of meters or more. In order to facilitate comparisons between the Goddard Earth Observation System (GEOS-5) and other modeling and observational systems, seven PBL depth estimation methods are used to produce PBL depth climatologies and are evaluated and compared here. All seven methods evaluate the same atmosphere so all differences are related solely to the definition chosen. These methods depend on the scalar diffusivity, bulk and local Richardson numbers, and the diagnosed horizontal turbulent kinetic energy (TKE). Results are aggregated by climate class in order to allow broad generalizations. The various PBL depth estimations give similar midday results with some exceptions. One method based on horizontal turbulent kinetic energy produces deeper PBL depths in the winter associated with winter storms. In warm, moist conditions, the method based on a bulk Richardson number gives results that are shallower than those given by the methods based on the scalar diffusivity. The impact of turbulence driven by radiative cooling at cloud top is most significant during the evening transition and along several regions across the oceans and methods sensitive to this cooling produce deeper PBL depths where it is most active. Additionally, Richardson number-based methods collapse better at night than methods that depend on the scalar diffusivity. This feature potentially affects tracer transport.

Retrieval of Aerosol Optical Depth Above Clouds from OMI Observations: Sensitivity Analysis, Case Studies

NASA Technical Reports Server (NTRS)

Torres, O.; Jethva, H.; Bhartia, P. K.

2012-01-01

A large fraction of the atmospheric aerosol load reaching the free troposphere is frequently located above low clouds. Most commonly observed aerosols above clouds are carbonaceous particles generally associated with biomass burning and boreal forest fires, and mineral aerosols originated in arid and semi-arid regions and transported across large distances, often above clouds. Because these aerosols absorb solar radiation, their role in the radiative transfer balance of the earth atmosphere system is especially important. The generally negative (cooling) top of the atmosphere direct effect of absorbing aerosols, may turn into warming when the light-absorbing particles are located above clouds. The actual effect depends on the aerosol load and the single scattering albedo, and on the geometric cloud fraction. In spite of its potential significance, the role of aerosols above clouds is not adequately accounted for in the assessment of aerosol radiative forcing effects due to the lack of measurements. In this paper we discuss the basis of a simple technique that uses near-UV observations to simultaneously derive the optical depth of both the aerosol layer and the underlying cloud for overcast conditions. The two-parameter retrieval method described here makes use of the UV aerosol index and reflectance measurements at 388 nm. A detailed sensitivity analysis indicates that the measured radiances depend mainly on the aerosol absorption exponent and aerosol-cloud separation. The technique was applied to above-cloud aerosol events over the Southern Atlantic Ocean yielding realistic results as indicated by indirect evaluation methods. An error analysis indicates that for typical overcast cloudy conditions and aerosol loads, the aerosol optical depth can be retrieved with an accuracy of approximately 54% whereas the cloud optical depth can be derived within 17% of the true value.

Simultaneous multi-depth assessment of tissue oxygen saturation in thenar and forearm using near-infrared spectroscopy during a simple cardiovascular challenge

PubMed Central

2009-01-01

Introduction Hypovolemia and hypovolemic shock are life-threatening conditions that occur in numerous clinical scenarios. Near-infrared spectroscopy (NIRS) has been widely explored, successfully and unsuccessfully, in an attempt to use it as an early detector of hypovolemia by measuring tissue oxygen saturation (StO2). In order to investigate the measurement site dependence and probe dependence of NIRS in response to hemodynamic changes, such as hypovolemia, we applied a simple cardiovascular challenge: a posture change from supine to upright, causing a decrease in stroke volume (as in hypovolemia) and a heart rate increase in combination with peripheral vasoconstriction to maintain adequate blood pressure. Methods Multi-depth NIRS was used in nine healthy volunteers to assess changes in StO2 in the thenar and forearm in response to the hemodynamic changes associated with a posture change from supine to upright. Results A posture change from supine to upright resulted in a significant increase (P < 0.001) in heart rate. Thenar StO2 did not respond to the hemodynamic changes following the posture change, whereas forearm StO2 did. Forearm StO2 was significantly lower (P < 0.001) in the upright position compared to supine for all probing depths. Conclusions The primary findings in this study were that forearm StO2 is a more sensitive parameter to hemodynamic changes than thenar StO2 and that the depth at which StO2 is measured is of minor influence. Our data support the use of forearm StO2 as a sensitive parameter for the detection of central hypovolemia and hypovolemic shock in (trauma) patients. PMID:19951389

Monte Carlo simulation of the spatial resolution and depth sensitivity of two-dimensional optical imaging of the brain

PubMed Central

Tian, Peifang; Devor, Anna; Sakadžić, Sava; Dale, Anders M.; Boas, David A.

2011-01-01

Absorption or fluorescence-based two-dimensional (2-D) optical imaging is widely employed in functional brain imaging. The image is a weighted sum of the real signal from the tissue at different depths. This weighting function is defined as “depth sensitivity.” Characterizing depth sensitivity and spatial resolution is important to better interpret the functional imaging data. However, due to light scattering and absorption in biological tissues, our knowledge of these is incomplete. We use Monte Carlo simulations to carry out a systematic study of spatial resolution and depth sensitivity for 2-D optical imaging methods with configurations typically encountered in functional brain imaging. We found the following: (i) the spatial resolution is <200 μm for NA ≤0.2 or focal plane depth ≤300 μm. (ii) More than 97% of the signal comes from the top 500 μm of the tissue. (iii) For activated columns with lateral size larger than spatial resolution, changing numerical aperature (NA) and focal plane depth does not affect depth sensitivity. (iv) For either smaller columns or large columns covered by surface vessels, increasing NA and∕or focal plane depth may improve depth sensitivity at deeper layers. Our results provide valuable guidance for the optimization of optical imaging systems and data interpretation. PMID:21280912

The dynamic deformation of a layered viscoelastic medium under surface excitation

NASA Astrophysics Data System (ADS)

Aglyamov, Salavat R.; Wang, Shang; Karpiouk, Andrei B.; Li, Jiasong; Twa, Michael; Emelianov, Stanislav Y.; Larin, Kirill V.

2015-06-01

In this study the dynamic behavior of a layered viscoelastic medium in response to the harmonic and impulsive acoustic radiation force applied to its surface was investigated both theoretically and experimentally. An analytical solution for a layered viscoelastic compressible medium in frequency and time domains was obtained using the Hankel transform. A special incompressible case was considered to model soft biological tissues. To verify our theoretical model, experiments were performed using tissue-like gel-based phantoms with varying mechanical properties. A 3.5 MHz single-element focused ultrasound transducer was used to apply the radiation force at the surface of the phantoms. A phase-sensitive optical coherence tomography system was used to track the displacements of the phantom surface. Theoretically predicted displacements were compared with experimental measurements. The role of the depth dependence of the elastic properties of a medium in its response to an acoustic pulse at the surface was studied. It was shown that the low-frequency vibrations at the surface are more sensitive to the deep layers than high-frequency ones. Therefore, the proposed model in combination with spectral analysis can be used to evaluate depth-dependent distribution of the mechanical properties based on the measurements of the surface deformation.

Mapping the Moho with seismic surface waves: Sensitivity, resolution, and recommended inversion strategies

NASA Astrophysics Data System (ADS)

Lebedev, Sergei; Adam, Joanne; Meier, Thomas

2013-04-01

Seismic surface waves have been used to study the Earth's crust since the early days of modern seismology. In the last decade, surface-wave crustal imaging has been rejuvenated by the emergence of new, array techniques (ambient-noise and teleseismic interferometry). The strong sensitivity of both Rayleigh and Love waves to the Moho is evident from a mere visual inspection of their dispersion curves or waveforms. Yet, strong trade-offs between the Moho depth and crustal and mantle structure in surface-wave inversions have prompted doubts regarding their capacity to resolve the Moho. Although the Moho depth has been an inversion parameter in numerous surface-wave studies, the resolution of Moho properties yielded by a surface-wave inversion is still somewhat uncertain and controversial. We use model-space mapping in order to elucidate surface waves' sensitivity to the Moho depth and the resolution of their inversion for it. If seismic wavespeeds within the crust and upper mantle are known, then Moho-depth variations of a few kilometres produce large (over 1 per cent) perturbations in phase velocities. However, in inversions of surface-wave data with no a priori information (wavespeeds not known), strong Moho-depth/shear-speed trade-offs will mask about 90 per cent of the Moho-depth signal, with remaining phase-velocity perturbations 0.1-0.2 per cent only. In order to resolve the Moho with surface waves alone, errors in the data must thus be small (up to 0.2 per cent for resolving continental Moho). If the errors are larger, Moho-depth resolution is not warranted and depends on error distribution with period, with errors that persist over broad period ranges particularly damaging. An effective strategy for the inversion of surface-wave data alone for the Moho depth is to, first, constrain the crustal and upper-mantle structure by inversion in a broad period range and then determine the Moho depth in inversion in a narrow period range most sensitive to it, with the first-step results used as reference. We illustrate this strategy with an application to data from the Kaapvaal Craton. Prior information on crustal and mantle structure reduces the trade-offs and thus enables resolving the Moho depth with noisier data; such information should be sought and used whenever available (as has been done, explicitly or implicitly, in many previous studies). Joint analysis or inversion of surface-wave and other data (receiver functions, topography, gravity) can reduce uncertainties further and facilitate Moho mapping. Alone or as a part of multi-disciplinary datasets, surface-wave data offer unique sensitivity to the crustal and upper-mantle structure and are becoming increasingly important in the seismic imaging of the crust and the Moho. Reference Lebedev, S., J. Adam, T. Meier. Mapping the Moho with seismic surface waves: A review, resolution analysis, and recommended inversion strategies. Tectonophysics, "Moho" special issue, 10.1016/j.tecto.2012.12.030, 2013.

Thickness dependence of La0.7Sr0.3MnO3/PbZr0.2Ti0.8O3 magnetoelectric interfaces

NASA Astrophysics Data System (ADS)

Zhou, Jinling; Tra, Vu Thanh; Dong, Shuai; Trappen, Robbyn; Marcus, Matthew A.; Jenkins, Catherine; Frye, Charles; Wolfe, Evan; White, Ryan; Polisetty, Srinivas; Lin, Jiunn-Yuan; LeBeau, James M.; Chu, Ying-Hao; Holcomb, Mikel Barry

2015-10-01

Magnetoelectric materials have great potential to revolutionize electronic devices due to the coupling of their electric and magnetic properties. Thickness varying La0.7Sr0.3MnO3 (LSMO)/PbZr0.2Ti0.8O3 (PZT) heterostructures were built and measured in this article by valence sensitive x-ray absorption spectroscopy. The sizing effects of the heterostructures on the LSMO/PZT magnetoelectric interfaces were investigated through the behavior of Mn valence, a property associated with the LSMO magnetization. We found that Mn valence increases with both LSMO and PZT thickness. Piezoresponse force microscopy revealed a transition from monodomain to polydomain structure along the PZT thickness gradient. The ferroelectric surface charge may change with domain structure and its effects on Mn valence were simulated using a two-orbital double-exchange model. The screening of ferroelectric surface charge increases the electron charges in the interface region, and greatly changes the interfacial Mn valence, which likely plays a leading role in the interfacial magnetoelectric coupling. The LSMO thickness dependence was examined through the combination of two detection modes with drastically different attenuation depths. The different length scales of these techniques' sensitivity to the atomic valence were used to estimate the depth dependence Mn valence. A smaller interfacial Mn valence than the bulk was found by globally fitting the experimental results.

Caldera subsidence and magma chamber depth of the Olympus Mons volcano, Mars

NASA Technical Reports Server (NTRS)

Zuber, M. T.; Mouginis-Mark, P. J.

1992-01-01

An axisymmetric finite element model is constructed to calculate elastic stresses in a volcanic edifice to examine the relationship between surface tectonism, caldera subsidence, and the physical characteristics of Olympus Mons' magmatic reservoir. Model results indicate that the surface stress state is not strongly sensitive to the aspect ratio or pressure distribution of the magma chamber, or to the contrast in stiffness between the magma chamber and surroundings, but is strongly dependent on the depth and width of the chamber. A gross similarity is suggested between the configurations of the magmatic plumbing systems of Olympus Mons and several well-studied terrestrial volcanoes such as the Hawaiian shields.

ELECTRICAL TECHNIQUES FOR ENGINEERING APPLICATIONS.

USGS Publications Warehouse

Bisdorf, Robert J.

1985-01-01

Surface electrical geophysical methods have been used in such engineering applications as locating and delineating shallow gravel deposits, depth to bedrock, faults, clay zones, and other geological phenomena. Other engineering applications include determining water quality, tracing ground water contaminant plumes and locating dam seepages. Various methods and electrode arrays are employed to solve particular geological problems. The sensitivity of a particular method or electrode array depends upon the physics on which the method is based, the array geometry, the electrical contrast between the target and host materials, and the depth to the target. Each of the available electrical methods has its own particular advantages and applications which the paper discusses.

Assessing the sensitivity of a land-surface scheme to the parameter values using a single column model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pitman, A.J.

The sensitivity of a land-surface scheme (the Biosphere Atmosphere Transfer Scheme, BATS) to its parameter values was investigated using a single column model. Identifying which parameters were important in controlling the turbulent energy fluxes, temperature, soil moisture, and runoff was dependent upon many factors. In the simulation of a nonmoisture-stressed tropical forest, results were dependent on a combination of reservoir terms (soil depth, root distribution), flux efficiency terms (roughness length, stomatal resistance), and available energy (albedo). If moisture became limited, the reservoir terms increased in importance because the total fluxes predicted depended on moisture availability and not on the ratemore » of transfer between the surface and the atmosphere. The sensitivity shown by BATS depended on which vegetation type was being simulated, which variable was used to determine sensitivity, the magnitude and sign of the parameter change, the climate regime (precipitation amount and frequency), and soil moisture levels and proximity to wilting. The interactions between these factors made it difficult to identify the most important parameters in BATS. Therefore, this paper does not argue that a particular set of parameters is important in BATS, rather it shows that no general ranking of parameters is possible. It is also emphasized that using `stand-alone` forcing to examine the sensitivity of a land-surface scheme to perturbations, in either parameters or the atmosphere, is unreliable due to the lack of surface-atmospheric feedbacks.« less

Utilizing the Upcoming Gravity Measurements from Cassini's Proximal Orbits for Studying the Atmospheric Dynamics of Saturn - How Deep Do the Winds Penetrate?

NASA Astrophysics Data System (ADS)

Kaspi, Y.; Galanti, E.

2014-12-01

At the end of the Cassini mission, the spacecraft will descend into close-by proximal orbits around Saturn. During those proximal orbits, Cassini will obtain high precision gravity measurements of the planet. In this talk, we will discuss how this data can be used to estimate the depth of the observed flows on the planet. This can be done in several ways: 1. measurements of the high order even harmonics which beyond J10 are dominated by the dynamics; 2. measurements of odd gravity harmonics which have no contribution from a static planet, and therefore are a pure signature of dynamics; 3. upper limits on the depth can be obtained by comparing low order even harmonics from dynamical models to the difference between the measured low order even harmonics and the largest possible values of a static planet; 4. direct latitudinally varying measurements of the gravity field exerted on the spacecraft. We will discuss how these methods may be applied and show that given the expected sensitivity of Cassini the odd harmonics J3 and J5 will have the best sensitivity to deep dynamics, allowing detection of winds reaching only O(100km) deep, if those exist on Saturn. We use a hierarchy of dynamical models ranging from full 3D dynamical circulation models to simplified dynamical models where the sensitivity of the gravity field to the dynamics can be explored. In order to invert the gravity field to be measured by Cassini into the depth dependent circulation, an adjoint inverse model is constructed for the dynamical models, thus allowing backward integration of the dynamical model. This tool can be used for examination of various scenarios, including cases in which the depth of the wind depends on latitudinal position. In summary, we expect that the very end of Cassini's tour holds an opportunity for gravity measurements that may finally allow answering one of the long-lasting puzzles in planetary science regarding the depth of the zonal jets on the gas giants. In fact, as Juno will be performing similar measurements we hope to be able to build a picture of the dynamics for both Jupiter and Saturn. Answering this puzzle, will likely help explain the origin of the multiple jet streams and strong equatorial superrotation on the gas giants.

Radar attenuation and temperature within the Greenland Ice Sheet

USGS Publications Warehouse

MacGregor, Joseph A; Li, Jilu; Paden, John D; Catania, Ginny A; Clow, Gary D.; Fahnestock, Mark A; Gogineni, Prasad S.; Grimm, Robert E.; Morlighem, Mathieu; Nandi, Soumyaroop; Seroussi, Helene; Stillman, David E

2015-01-01

The flow of ice is temperature-dependent, but direct measurements of englacial temperature are sparse. The dielectric attenuation of radio waves through ice is also temperature-dependent, and radar sounding of ice sheets is sensitive to this attenuation. Here we estimate depth-averaged radar-attenuation rates within the Greenland Ice Sheet from airborne radar-sounding data and its associated radiostratigraphy. Using existing empirical relationships between temperature, chemistry, and radar attenuation, we then infer the depth-averaged englacial temperature. The dated radiostratigraphy permits a correction for the confounding effect of spatially varying ice chemistry. Where radar transects intersect boreholes, radar-inferred temperature is consistently higher than that measured directly. We attribute this discrepancy to the poorly recognized frequency dependence of the radar-attenuation rate and correct for this effect empirically, resulting in a robust relationship between radar-inferred and borehole-measured depth-averaged temperature. Radar-inferred englacial temperature is often lower than modern surface temperature and that of a steady state ice-sheet model, particularly in southern Greenland. This pattern suggests that past changes in surface boundary conditions (temperature and accumulation rate) affect the ice sheet's present temperature structure over a much larger area than previously recognized. This radar-inferred temperature structure provides a new constraint for thermomechanical models of the Greenland Ice Sheet.

Great Basin vegetation response to groundwater fluctuation, climate variability, and previous land cultivation: The application of multitemporal measurements from remote sensing data to regional vegetation dynamics

NASA Astrophysics Data System (ADS)

Elmore, Andrew James

The conversion of large natural basins to managed watersheds for the purpose of providing water to urban centers has had a negative impact on semiarid ecosystems, worldwide. We view semiarid plant communities as being adapted to short, regular periods of drought. However, human induced changes in the water balance often remove these systems from the range of natural variability that has been historically established. This thesis explores vegetation changes over a 13-yr period for Owens Valley, in eastern California. Using remotely sensed measurements of vegetation cover, an extensive vegetation survey, field data and observations, precipitation records, and data on water table depth, I identify the key modes of response of xeric, phreatophytic, and exotic Great Basin plant communities. Three specific advancements were reached as a result of this work. (1) A change classification technique was developed that was used to separate regions of land-cover that were dependent on precipitation from regions dependent on groundwater. This technique utilized Spectral Mixture Analysis of annually acquired Landsat Thematic Mapper remote sensing data, to retrieve regional estimates of percent vegetation cover. (2) A threshold response related to depth-to-water dependence was identified for phreatophytic Alkali Meadow communities. Plant communities that were subject to groundwater depths below this threshold exhibited greater invasion by precipitation sensitive plants. (3) The floristic differences between previously cultivated and uncultivated land were found to account for an increased sensitivity of plant communities to precipitation variability. Through (2) and (3), two human influences (groundwater decline and previous land cultivation) were shown to alter land cover such that the land became more sensitive to precipitation change. Climate change predictions include a component of increased climate variability for the western United States; therefore, these results place serious doubt on the sustainability of human activities in this region. The results from this work broadly cover topics from remote sensing techniques to the ecology of Great Basin plant communities and are applicable wherever large regions of land are being managed in an era of changing environmental conditions.

Snow accumulation on Arctic sea ice: is it a matter of how much or when?

NASA Astrophysics Data System (ADS)

Webster, M.; Petty, A.; Boisvert, L.; Markus, T.

2017-12-01

Snow on sea ice plays an important, yet sometimes opposing role in sea ice mass balance depending on the season. In autumn and winter, snow reduces the heat exchange from the ocean to the atmosphere, reducing sea ice growth. In spring and summer, snow shields sea ice from solar radiation, delaying sea ice surface melt. Changes in snow depth and distribution in any season therefore directly affect the mass balance of Arctic sea ice. In the western Arctic, a decreasing trend in spring snow depth distribution has been observed and attributed to the combined effect of peak snowfall rates in autumn and the coincident delay in sea ice freeze-up. Here, we build on this work and present an in-depth analysis on the relationship between snow accumulation and the timing of sea ice freeze-up across all Arctic regions. A newly developed two-layer snow model is forced with eight reanalysis precipitation products to: (1) identify the seasonal distribution of snowfall accumulation for different regions, (2) highlight which regions are most sensitive to the timing of sea ice freeze-up with regard to snow accumulation, and (3) show, if precipitation were to increase, which regions would be most susceptible to thicker snow covers. We also utilize a comprehensive sensitivity study to better understand the factors most important in controlling winter/spring snow depths, and to explore what could happen to snow depth on sea ice in a warming Arctic climate.

Magnetic and chemical nonuniformity in Ga{sub 1-x}Mn{sub x}As films as probed by polarized neutron and x-ray reflectometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirby, B. J.; Borchers, J. A.; Rhyne, J. J.

We have used complementary neutron and x-ray reflectivity techniques to examine the depth profiles of a series of as-grown and annealed Ga{sub 1-x}Mn{sub x}As thin films. A magnetization gradient is observed for two as-grown films and originates from a nonuniformity of Mn at interstitial sites, and not from local variations in Mn at Ga sites. Furthermore, we see that the depth-dependent magnetization can vary drastically among as-grown Ga{sub 1-x}Mn{sub x}As films despite being deposited under seemingly similar conditions. These results imply that the depth profile of interstitial Mn is dependent not only on annealing, but is also extremely sensitive tomore » initial growth conditions. We observe that annealing improves the magnetization by producing a surface layer that is rich in Mn and O, indicating that the interstitial Mn migrates to the surface. Finally, we expand upon our previous neutron reflectivity study of Ga{sub 1-x}Mn{sub x}As, by showing how the depth profile of the chemical composition at the surface and through the film thickness is directly responsible for the complex magnetization profiles observed in both as-grown and annealed films.« less

Magnetic and chemical nonuniformity in Ga{sub 1-x}Mn{sub x}As as probed with neutron & x-ray reflectivfity.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirby, B. J.; Borchers, J. A.; Rhyne, J. J.

We have used complementary neutron and x-ray reflectivity techniques to examine the depth profiles of a series of as-grown and annealed Ga{sub 1-x}Mn{sub x}As thin films. A magnetization gradient is observed for two as-grown films and originates from a nonuniformity of Mn at interstitial sites, and not from local variations in Mn at Ga sites. Furthermore, we see that the depth-dependent magnetization can vary drastically among as-grown Ga{sub 1-x}Mn{sub x}As films despite being deposited under seemingly similar conditions. These results imply that the depth profile of interstitial Mn is dependent not only on annealing, but is also extremely sensitive tomore » initial growth conditions. We observe that annealing improves the magnetization by producing a surface layer that is rich in Mn and O, indicating that the interstitial Mn migrates to the surface. Finally, we expand upon our previous neutron reflectivity study of Ga{sub 1-x}Mn{sub x}As, by showing how the depth profile of the chemical composition at the surface and through the film thickness is directly responsible for the complex magnetization profiles observed in both as-grown and annealed films.« less

Direct Aerosol Forcing Uncertainty

DOE Data Explorer

Mccomiskey, Allison

2008-01-15

Understanding sources of uncertainty in aerosol direct radiative forcing (DRF), the difference in a given radiative flux component with and without aerosol, is essential to quantifying changes in Earth's radiation budget. We examine the uncertainty in DRF due to measurement uncertainty in the quantities on which it depends: aerosol optical depth, single scattering albedo, asymmetry parameter, solar geometry, and surface albedo. Direct radiative forcing at the top of the atmosphere and at the surface as well as sensitivities, the changes in DRF in response to unit changes in individual aerosol or surface properties, are calculated at three locations representing distinct aerosol types and radiative environments. The uncertainty in DRF associated with a given property is computed as the product of the sensitivity and typical measurement uncertainty in the respective aerosol or surface property. Sensitivity and uncertainty values permit estimation of total uncertainty in calculated DRF and identification of properties that most limit accuracy in estimating forcing. Total uncertainties in modeled local diurnally averaged forcing range from 0.2 to 1.3 W m-2 (42 to 20%) depending on location (from tropical to polar sites), solar zenith angle, surface reflectance, aerosol type, and aerosol optical depth. The largest contributor to total uncertainty in DRF is usually single scattering albedo; however decreasing measurement uncertainties for any property would increase accuracy in DRF. Comparison of two radiative transfer models suggests the contribution of modeling error is small compared to the total uncertainty although comparable to uncertainty arising from some individual properties.

Proton dose distribution measurements using a MOSFET detector with a simple dose-weighted correction method for LET effects.

PubMed

Kohno, Ryosuke; Hotta, Kenji; Matsuura, Taeko; Matsubara, Kana; Nishioka, Shie; Nishio, Teiji; Kawashima, Mitsuhiko; Ogino, Takashi

2011-04-04

We experimentally evaluated the proton beam dose reproducibility, sensitivity, angular dependence and depth-dose relationships for a new Metal Oxide Semiconductor Field Effect Transistor (MOSFET) detector. The detector was fabricated with a thinner oxide layer and was operated at high-bias voltages. In order to accurately measure dose distributions, we developed a practical method for correcting the MOSFET response to proton beams. The detector was tested by examining lateral dose profiles formed by protons passing through an L-shaped bolus. The dose reproducibility, angular dependence and depth-dose response were evaluated using a 190 MeV proton beam. Depth-output curves produced using the MOSFET detectors were compared with results obtained using an ionization chamber (IC). Since accurate measurements of proton dose distribution require correction for LET effects, we developed a simple dose-weighted correction method. The correction factors were determined as a function of proton penetration depth, or residual range. The residual proton range at each measurement point was calculated using the pencil beam algorithm. Lateral measurements in a phantom were obtained for pristine and SOBP beams. The reproducibility of the MOSFET detector was within 2%, and the angular dependence was less than 9%. The detector exhibited a good response at the Bragg peak (0.74 relative to the IC detector). For dose distributions resulting from protons passing through an L-shaped bolus, the corrected MOSFET dose agreed well with the IC results. Absolute proton dosimetry can be performed using MOSFET detectors to a precision of about 3% (1 sigma). A thinner oxide layer thickness improved the LET in proton dosimetry. By employing correction methods for LET dependence, it is possible to measure absolute proton dose using MOSFET detectors.

Remote Estimation of River Discharge and Bathymetry: Sensitivity to Turbulent Dissipation and Bottom Friction

NASA Astrophysics Data System (ADS)

Simeonov, J.; Holland, K. T.

2016-12-01

We investigated the fidelity of a hierarchy of inverse models that estimate river bathymetry and discharge using measurements of surface currents and water surface elevation. Our most comprehensive depth inversion was based on the Shiono and Knight (1991) model that considers the depth-averaged along-channel momentum balance between the downstream pressure gradient due to gravity, the bottom drag and the lateral stresses induced by turbulence. The discharge was determined by minimizing the difference between the predicted and the measured streamwise variation of the total head. The bottom friction coefficient was assumed to be known or determined by alternative means. We also considered simplifications of the comprehensive inversion model that exclude the lateral mixing term from the momentum balance and assessed the effect of neglecting this term on the depth and discharge estimates for idealized in-bank flow in symmetric trapezoidal channels with width/depth ratio of 40 and different side-wall slopes. For these simple gravity-friction models, we used two different bottom friction parameterizations - a constant Darcy-Weisbach local friction and a depth-dependent friction related to the local depth and a constant Manning (roughness) coefficient. Our results indicated that the Manning gravity-friction model provides accurate estimates of the depth and the discharge that are within 1% of the assumed values for channels with side-wall slopes between 1/2 and 1/17. On the other hand, the constant Darcy-Weisbach friction model underpredicted the true depth and discharge by 7% and 9%, respectively, for the channel with side-wall slope of 1/17. These idealized modeling results suggest that a depth-dependent parameterization of the bottom friction is important for accurate inversion of depth and discharge and that the lateral turbulent mixing is not important. We also tested the comprehensive and the simplified inversion models for the Kootenai River near Bonners Ferry (Idaho) using in situ and remote sensing measurements of surface currents and water surface elevation obtained during a 2010 field experiment.

SU-E-T-169: Initial Investigation into the Use of Optically Stimulated Luminescent Dosimeters (OSLDs) for In-Vivo Dosimetry of TBI Patients.

PubMed

Paloor, S; Aland, T; Mathew, J; Al-Hammadi, N; Hammoud, R

2012-06-01

To report on an initial investigation into the use of optically stimulated luminescent dosimeters (OSLDs) for in-vivo dosimetry for total body irradiation (TBI) treatments. Specifically, we report on the determination of angular dependence, sensitivity correction factors and the dose calibration factors. The OSLD investigated in our work was InLight/OSL nanoDot dosimeters (Landauer Inc.). Nanodots are 5 mm diameter, 0.2 mm thick disk-shaped Carbon-doped Al2O3, and were read using a Landauer InLight microstar reader and associated software.OSLDs were irradiated under two setup conditions: a) typical clinical reference conditions (95cm SSD, 5cm depth in solid water, 10×10 cm field size), and b) TBI conditions (520cm SSD, 5cm depth in solid water, 40×40 cm field size,). The angular dependence was checked for angles ranging ±60 degree from normal incidence. In order to directly compare the sensitivity correction factors, a common dose was delivered to the OSLDs for the two setups. Pre- and post-irradiation readings were acquired. OSLDs were optically annealed under various techniques (1) by keeping over a film view box, (2) Using multiple scan on a flat bed optical scanner and (3) Using natural room light. Under reference conditions, the calculated sensitivity correction factors of the OSLDs had a SD of 2.2% and a range of 5%. Under TBI conditions, the SD increased to 3.4% and the range to 6.0%. The variation in sensitivity correction factors between individual OSLDs across the two measurement conditions was up to 10.3%. Angular dependence of less than 1% is observed. The best bleaching method we found is to keep OSLDs for more than 3 hours on a film viewer which will reduce normalized response to less than 1%. In order to obtain the most accurate results when using OSLDs for in-vivo dosimetry for TBI treatments, sensitivity correction factors and dose calibration factors should all be determined under clinical TBI conditions. © 2012 American Association of Physicists in Medicine.

Combined evaluation of grazing incidence X-ray fluorescence and X-ray reflectivity data for improved profiling of ultra-shallow depth distributions☆

PubMed Central

Ingerle, D.; Meirer, F.; Pepponi, G.; Demenev, E.; Giubertoni, D.; Wobrauschek, P.; Streli, C.

2014-01-01

The continuous downscaling of the process size for semiconductor devices pushes the junction depths and consequentially the implantation depths to the top few nanometers of the Si substrate. This motivates the need for sensitive methods capable of analyzing dopant distribution, total dose and possible impurities. X-ray techniques utilizing the external reflection of X-rays are very surface sensitive, hence providing a non-destructive tool for process analysis and control. X-ray reflectometry (XRR) is an established technique for the characterization of single- and multi-layered thin film structures with layer thicknesses in the nanometer range. XRR spectra are acquired by varying the incident angle in the grazing incidence regime while measuring the specular reflected X-ray beam. The shape of the resulting angle-dependent curve is correlated to changes of the electron density in the sample, but does not provide direct information on the presence or distribution of chemical elements in the sample. Grazing Incidence XRF (GIXRF) measures the X-ray fluorescence induced by an X-ray beam incident under grazing angles. The resulting angle dependent intensity curves are correlated to the depth distribution and mass density of the elements in the sample. GIXRF provides information on contaminations, total implanted dose and to some extent on the depth of the dopant distribution, but is ambiguous with regard to the exact distribution function. Both techniques use similar measurement procedures and data evaluation strategies, i.e. optimization of a sample model by fitting measured and calculated angle curves. Moreover, the applied sample models can be derived from the same physical properties, like atomic scattering/form factors and elemental concentrations; a simultaneous analysis is therefore a straightforward approach. This combined analysis in turn reduces the uncertainties of the individual techniques, allowing a determination of dose and depth profile of the implanted elements with drastically increased confidence level. Silicon wafers implanted with Arsenic at different implantation energies were measured by XRR and GIXRF using a combined, simultaneous measurement and data evaluation procedure. The data were processed using a self-developed software package (JGIXA), designed for simultaneous fitting of GIXRF and XRR data. The results were compared with depth profiles obtained by Secondary Ion Mass Spectrometry (SIMS). PMID:25202165

Sulcal depth-based cortical shape analysis in normal healthy control and schizophrenia groups

NASA Astrophysics Data System (ADS)

Lyu, Ilwoo; Kang, Hakmook; Woodward, Neil D.; Landman, Bennett A.

2018-03-01

Sulcal depth is an important marker of brain anatomy in neuroscience/neurological function. Previously, sulcal depth has been explored at the region-of-interest (ROI) level to increase statistical sensitivity to group differences. In this paper, we present a fully automated method that enables inferences of ROI properties from a sulcal region- focused perspective consisting of two main components: 1) sulcal depth computation and 2) sulcal curve-based refined ROIs. In conventional statistical analysis, the average sulcal depth measurements are employed in several ROIs of the cortical surface. However, taking the average sulcal depth over the full ROI blurs overall sulcal depth measurements which may result in reduced sensitivity to detect sulcal depth changes in neurological and psychiatric disorders. To overcome such a blurring effect, we focus on sulcal fundic regions in each ROI by filtering out other gyral regions. Consequently, the proposed method results in more sensitive to group differences than a traditional ROI approach. In the experiment, we focused on a cortical morphological analysis to sulcal depth reduction in schizophrenia with a comparison to the normal healthy control group. We show that the proposed method is more sensitivity to abnormalities of sulcal depth in schizophrenia; sulcal depth is significantly smaller in most cortical lobes in schizophrenia compared to healthy controls (p < 0.05).

Comparison of GEOS-5 AGCM planetary boundary layer depths computed with various definitions

NASA Astrophysics Data System (ADS)

McGrath-Spangler, E. L.; Molod, A.

2014-07-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Köppen-Geiger climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number methods are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

Comparison of GEOS-5 AGCM Planetary Boundary Layer Depths Computed with Various Definitions

NASA Technical Reports Server (NTRS)

Mcgrath-Spangler, E. L.; Molod, A.

2014-01-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Koppen climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes, the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

Comparison of GEOS-5 AGCM planetary boundary layer depths computed with various definitions

NASA Astrophysics Data System (ADS)

McGrath-Spangler, E. L.; Molod, A.

2014-03-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Köppen climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes, the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

Trend analysis of Terra/ASTER/VNIR radiometric calibration coefficient through onboard and vicarious calibrations as well as cross calibration with MODIS

NASA Astrophysics Data System (ADS)

Arai, Kohei

2012-07-01

More than 11 years Radiometric Calibration Coefficients (RCC) derived from onboard and vicarious calibrations are compared together with cross comparison to the well calibrated MODIS RCC. Fault Tree Analysis (FTA) is also conducted for clarification of possible causes of the RCC degradation together with sensitivity analysis for vicarious calibration. One of the suspects of causes of RCC degradation is clarified through FTA. Test site dependency on vicarious calibration is quite obvious. It is because of the vicarious calibration RCC is sensitive to surface reflectance measurement accuracy, not atmospheric optical depth. The results from cross calibration with MODIS support that significant sensitivity of surface reflectance measurements on vicarious calibration.

Laser/Materials Interaction Studies for Enhanced Sensitivity of Laser Ultrasonic Systems.

DTIC Science & Technology

1998-05-01

laser wavelengths is given. Graphite is birefrengent , and hence, the index of refraction and the skin depth depend on the polarization direction...Another development in the model would be the inclusion of processes occurring in the air under atmospheric conditions. The vacuum model presented... atmospheric pressure. 279 74 The jump conditions for cases where this approximation breaks down are treated by Knight (1979). Vaporization in the

Feasibility of high-resolution one-dimensional relaxation imaging at low magnetic field using a single-sided NMR scanner applied to articular cartilage

NASA Astrophysics Data System (ADS)

Rössler, Erik; Mattea, Carlos; Stapf, Siegfried

2015-02-01

Low field Nuclear Magnetic Resonance increases the contrast of the longitudinal relaxation rate in many biological tissues; one prominent example is hyaline articular cartilage. In order to take advantage of this increased contrast and to profile the depth-dependent variations, high resolution parameter measurements are carried out which can be of critical importance in an early diagnosis of cartilage diseases such as osteoarthritis. However, the maximum achievable spatial resolution of parameter profiles is limited by factors such as sensor geometry, sample curvature, and diffusion limitation. In this work, we report on high-resolution single-sided NMR scanner measurements with a commercial device, and quantify these limitations. The highest achievable spatial resolution on the used profiler, and the lateral dimension of the sensitive volume were determined. Since articular cartilage samples are usually bent, we also focus on averaging effects inside the horizontally aligned sensitive volume and their impact on the relaxation profiles. Taking these critical parameters into consideration, depth-dependent relaxation time profiles with the maximum achievable vertical resolution of 20 μm are discussed, and are correlated with diffusion coefficient profiles in hyaline articular cartilage in order to reconstruct T2 maps from the diffusion-weighted CPMG decays of apparent relaxation rates.

Self-interference fluorescence microscopy with three-phase detection for depth-resolved confocal epi-fluorescence imaging.

PubMed

Braaf, Boy; de Boer, Johannes F

2017-03-20

Three-dimensional confocal fluorescence imaging of in vivo tissues is challenging due to sample motion and limited imaging speeds. In this paper a novel method is therefore presented for scanning confocal epi-fluorescence microscopy with instantaneous depth-sensing based on self-interference fluorescence microscopy (SIFM). A tabletop epi-fluorescence SIFM setup was constructed with an annular phase plate in the emission path to create a spectral self-interference signal that is phase-dependent on the axial position of a fluorescent sample. A Mach-Zehnder interferometer based on a 3 × 3 fiber-coupler was developed for a sensitive phase analysis of the SIFM signal with three photon-counter detectors instead of a spectrometer. The Mach-Zehnder interferometer created three intensity signals that alternately oscillated as a function of the SIFM spectral phase and therefore encoded directly for the axial sample position. Controlled axial translation of fluorescent microsphere layers showed a linear dependence of the SIFM spectral phase with sample depth over axial image ranges of 500 µm and 80 µm (3.9 × Rayleigh range) for 4 × and 10 × microscope objectives respectively. In addition, SIFM was in good agreement with optical coherence tomography depth measurements on a sample with indocyanine green dye filled capillaries placed at multiple depths. High-resolution SIFM imaging applications are demonstrated for fluorescence angiography on a dye-filled capillary blood vessel phantom and for autofluorescence imaging on an ex vivo fly eye.

Quantifying the accuracy of snow water equivalent estimates using broadband radar signal phase

NASA Astrophysics Data System (ADS)

Deeb, E. J.; Marshall, H. P.; Lamie, N. J.; Arcone, S. A.

2014-12-01

Radar wave velocity in dry snow depends solely on density. Consequently, ground-based pulsed systems can be used to accurately measure snow depth and snow water equivalent (SWE) using signal travel-time, along with manual depth-probing for signal velocity calibration. Travel-time measurements require a large bandwidth pulse not possible in airborne/space-borne platforms. In addition, radar backscatter from snow cover is sensitive to grain size and to a lesser extent roughness of layers at current/proposed satellite-based frequencies (~ 8 - 18 GHz), complicating inversion for SWE. Therefore, accurate retrievals of SWE still require local calibration due to this sensitivity to microstructure and layering. Conversely, satellite radar interferometry, which senses the difference in signal phase between acquisitions, has shown a potential relationship with SWE at lower frequencies (~ 1 - 5 GHz) because the phase of the snow-refracted signal is sensitive to depth and dielectric properties of the snowpack, as opposed to its microstructure and stratigraphy. We have constructed a lab-based, experimental test bed to quantify the change in radar phase over a wide range of frequencies for varying depths of dry quartz sand, a material dielectrically similar to dry snow. We use a laboratory grade Vector Network Analyzer (0.01 - 25.6 GHz) and a pair of antennae mounted on a trolley over the test bed to measure amplitude and phase repeatedly/accurately at many frequencies. Using ground-based LiDAR instrumentation, we collect a coordinated high-resolution digital surface model (DSM) of the test bed and subsequent depth surfaces with which to compare the radar record of changes in phase. Our plans to transition this methodology to a field deployment during winter 2014-2015 using precision pan/tilt instrumentation will also be presented, as well as applications to airborne and space-borne platforms toward the estimation of SWE at high spatial resolution (on the order of meters) over large regions (> 100 square kilometers).

Characterization of a Method for Inverse Heat Conduction Using Real and Simulated Thermocouple Data

NASA Technical Reports Server (NTRS)

Pizzo, Michelle E.; Glass, David E.

2017-01-01

It is often impractical to instrument the external surface of high-speed vehicles due to the aerothermodynamic heating. Temperatures can instead be measured internal to the structure using embedded thermocouples, and direct and inverse methods can then be used to estimate temperature and heat flux on the external surface. Two thermocouples embedded at different depths are required to solve direct and inverse problems, and filtering schemes are used to reduce noise in the measured data. Accuracy in the estimated surface temperature and heat flux is dependent on several factors. Factors include the thermocouple location through the thickness of a material, the sensitivity of the surface solution to the error in the specified location of the embedded thermocouples, and the sensitivity to the error in thermocouple data. The effect of these factors on solution accuracy is studied using the methodology discussed in the work of Pizzo, et. al.1 A numerical study is performed to determine if there is an optimal depth at which to embed one thermocouple through the thickness of a material assuming that a second thermocouple is installed on the back face. Solution accuracy will be discussed for a range of embedded thermocouple depths. Moreover, the sensitivity of the surface solution to (a) the error in the specified location of the embedded thermocouple and to (b) the error in the thermocouple data are quantified using numerical simulation, and the results are discussed.

Auditory Distance Coding in Rabbit Midbrain Neurons and Human Perception: Monaural Amplitude Modulation Depth as a Cue

PubMed Central

Zahorik, Pavel; Carney, Laurel H.; Bishop, Brian B.; Kuwada, Shigeyuki

2015-01-01

Mechanisms underlying sound source distance localization are not well understood. Here we tested the hypothesis that a novel mechanism can create monaural distance sensitivity: a combination of auditory midbrain neurons' sensitivity to amplitude modulation (AM) depth and distance-dependent loss of AM in reverberation. We used virtual auditory space (VAS) methods for sounds at various distances in anechoic and reverberant environments. Stimulus level was constant across distance. With increasing modulation depth, some rabbit inferior colliculus neurons increased firing rates whereas others decreased. These neurons exhibited monotonic relationships between firing rates and distance for monaurally presented noise when two conditions were met: (1) the sound had AM, and (2) the environment was reverberant. The firing rates as a function of distance remained approximately constant without AM in either environment and, in an anechoic condition, even with AM. We corroborated this finding by reproducing the distance sensitivity using a neural model. We also conducted a human psychophysical study using similar methods. Normal-hearing listeners reported perceived distance in response to monaural 1 octave 4 kHz noise source sounds presented at distances of 35–200 cm. We found parallels between the rabbit neural and human responses. In both, sound distance could be discriminated only if the monaural sound in reverberation had AM. These observations support the hypothesis. When other cues are available (e.g., in binaural hearing), how much the auditory system actually uses the AM as a distance cue remains to be determined. PMID:25834060

Neutron reflectometry as a tool to study magnetism.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Felcher, G. P.

1999-09-21

Polarized-neutron specular reflectometry (PNR) was developed in the 1980's as a means of measuring magnetic depth profiles in flat films. Starting from simple profiles, and gradually solving structures of greater complexity, PNR has been used to observe or clarify a variety of magnetic phenomena. It has been used to measure the absolute magnetization of films of thickness not exceeding a few atomic planes, the penetration of magnetic fields in micron-thick superconductors, and the detailed magnetic coupling across non-magnetic spacers in multilayers and superlattices. Although PNR is considered a probe of depth dependent magnetic structure, laterally averaged in the plane ofmore » the film, the development of new scattering techniques promises to enable the characterization of lateral magnetic structures. Retaining the depth-sensitivity of specular reflectivity, off-specular reflectivity may be brought to resolve in-plane structures over nanometer to micron length scales.« less

The nonstationary strain filter in elastography: Part I. Frequency dependent attenuation.

PubMed

Varghese, T; Ophir, J

1997-01-01

The accuracy and precision of the strain estimates in elastography depend on a myriad number of factors. A clear understanding of the various factors (noise sources) that plague strain estimation is essential to obtain quality elastograms. The nonstationary variation in the performance of the strain filter due to frequency-dependent attenuation and lateral and elevational signal decorrelation are analyzed in this and the companion paper for the cross-correlation-based strain estimator. In this paper, we focus on the role of frequency-dependent attenuation in the performance of the strain estimator. The reduction in the signal-to-noise ratio (SNRs) in the RF signal, and the center frequency and bandwidth downshift with frequency-dependent attenuation are incorporated into the strain filter formulation. Both linear and nonlinear frequency dependence of attenuation are theoretically analyzed. Monte-Carlo simulations are used to corroborate the theoretically predicted results. Experimental results illustrate the deterioration in the precision of the strain estimates with depth in a uniformly elastic phantom. Theoretical, simulation and experimental results indicate the importance of high SNRs values in the RF signals, because the strain estimation sensitivity, elastographic SNRe and dynamic range deteriorate rapidly with a decrease in the SNRs. In addition, a shift in the strain filter toward higher strains is observed at large depths in tissue due to the center frequency downshift.

Three-dimensional shear wave velocity structure in the Atlantic upper mantle

NASA Astrophysics Data System (ADS)

James, Esther Kezia Candace

Oceanic lithosphere constitutes the upper boundary layer of the Earth's convecting mantle. Its structure and evolution provide a vital window on the dynamics of the mantle and important clues to how the motions of Earth's surface plates are coupled to convection in the mantle below. The three-dimensional shear-velocity structure of the upper mantle beneath the Atlantic Ocean is investigated to gain insight into processes that drive formation of oceanic lithosphere. Travel times are measured for approximately 10,000 fundamental-mode Rayleigh waves, in the period range 30-130 seconds, traversing the Atlantic basin. Paths with >30% of their length through continental upper mantle are excluded to maximize sensitivity to the oceanic upper mantle. The lateral distribution of Rayleigh wave phase velocity in the Atlantic upper mantle is explored with two approaches. One, phase velocity is allowed to vary only as a function of seafloor age. Two, a general two-dimensional parameterization is utilized in order to capture perturbations to age-dependent structure. Phase velocity shows a strong dependence on seafloor age, and removing age-dependent velocity from the 2-D maps highlights areas of anomalously low velocity, almost all of which are proximal to locations of hotspot volcanism. Depth-dependent variations in vertically-polarized shear velocity (Vsv) are determined with two sets of 3-D models: a layered model that requires constant VSV in each depth layer, and a splined model that allows VSV to vary continuously with depth. At shallow depths (˜75 km) the seismic structure shows the expected dependence on seafloor age. At greater depths (˜200 km) high-velocity lithosphere is found only beneath the oldest seafloor; velocity variations beneath younger seafloor may result from temperature or compositional variations within the asthenosphere. The age-dependent phase velocities are used to constrain temperature in the mantle and show that, in contrast to previous results for the Pacific, phase velocities for the Atlantic are not consistent with a half-space cooling model but are best explained by a plate-cooling model with thickness of 75 km and mantle temperature of 1400°C. Comparison with data such as basalt chemistry and seafloor elevation helps to separate thermal and compositional effects on shear velocity.

Listening to membrane potential: photoacoustic voltage-sensitive dye recording.

PubMed

Zhang, Haichong K; Yan, Ping; Kang, Jeeun; Abou, Diane S; Le, Hanh N D; Jha, Abhinav K; Thorek, Daniel L J; Kang, Jin U; Rahmim, Arman; Wong, Dean F; Boctor, Emad M; Loew, Leslie M

2017-04-01

Voltage-sensitive dyes (VSDs) are designed to monitor membrane potential by detecting fluorescence changes in response to neuronal or muscle electrical activity. However, fluorescence imaging is limited by depth of penetration and high scattering losses, which leads to low sensitivity in vivo systems for external detection. By contrast, photoacoustic (PA) imaging, an emerging modality, is capable of deep tissue, noninvasive imaging by combining near-infrared light excitation and ultrasound detection. Here, we show that voltage-dependent quenching of dye fluorescence leads to a reciprocal enhancement of PA intensity. We synthesized a near-infrared photoacoustic VSD (PA-VSD), whose PA intensity change is sensitive to membrane potential. In the polarized state, this cyanine-based probe enhances PA intensity while decreasing fluorescence output in a lipid vesicle membrane model. A theoretical model accounts for how the experimental PA intensity change depends on fluorescence and absorbance properties of the dye. These results not only demonstrate PA voltage sensing but also emphasize the interplay of both fluorescence and absorbance properties in the design of optimized PA probes. Together, our results demonstrate PA sensing as a potential new modality for recording and external imaging of electrophysiological and neurochemical events in the brain.

Listening to membrane potential: photoacoustic voltage-sensitive dye recording

NASA Astrophysics Data System (ADS)

Zhang, Haichong K.; Yan, Ping; Kang, Jeeun; Abou, Diane S.; Le, Hanh N. D.; Jha, Abhinav K.; Thorek, Daniel L. J.; Kang, Jin U.; Rahmim, Arman; Wong, Dean F.; Boctor, Emad M.; Loew, Leslie M.

2017-04-01

Voltage-sensitive dyes (VSDs) are designed to monitor membrane potential by detecting fluorescence changes in response to neuronal or muscle electrical activity. However, fluorescence imaging is limited by depth of penetration and high scattering losses, which leads to low sensitivity in vivo systems for external detection. By contrast, photoacoustic (PA) imaging, an emerging modality, is capable of deep tissue, noninvasive imaging by combining near-infrared light excitation and ultrasound detection. Here, we show that voltage-dependent quenching of dye fluorescence leads to a reciprocal enhancement of PA intensity. We synthesized a near-infrared photoacoustic VSD (PA-VSD), whose PA intensity change is sensitive to membrane potential. In the polarized state, this cyanine-based probe enhances PA intensity while decreasing fluorescence output in a lipid vesicle membrane model. A theoretical model accounts for how the experimental PA intensity change depends on fluorescence and absorbance properties of the dye. These results not only demonstrate PA voltage sensing but also emphasize the interplay of both fluorescence and absorbance properties in the design of optimized PA probes. Together, our results demonstrate PA sensing as a potential new modality for recording and external imaging of electrophysiological and neurochemical events in the brain.

Climate Sensitivity to Shallow Groundwater Dynamics Inferred from Historical Groundwater Level Observations and Climate Data

NASA Astrophysics Data System (ADS)

Seyoum, W. M.; Wahls, B.

2017-12-01

The effect of land surface processes (e.g., change in vegetation and snow cover, and change in soil moisture) on climate is well understood. However, the connection between shallow groundwater fluctuation and regional climate variability is still unresolved. This project focuses on sensitivity of climate to shallow groundwater dynamics by analyzing the impact of shallow groundwater on soil moisture and precipitation. The study use co-located measurements of daily soil moisture, depth to groundwater level (DGWL), and climate (precipitation (R) and air temperature) data. Statistical relationship between soil moisture and DGWL at different depth established. Frequency, mean and cumulative climate extremes (R90, R99, R < 1mm) examined and compared with depth to groundwater level information at Bellville station, IL. Result indicate soil moisture has a strong inverse relationship with depth to groundwater level (r -0.75) when DGWL is between 0 to 2 m (critical depth) depth from the ground. Beyond this depth, there is no statistically significant correlation or trend between soil moisture and GWL. Within this critical depth, soil moisture is more or less constant during wet days (R ≥ 1mm) even though DGWL is fluctuating. However, soil moisture decrease exponentially as DGWL declining during dry days (R < 1mm). Thus, soil moisture is highly likely dependent on groundwater feedback in the critical depth. Comparison of DGWL with frequency and cumulative of subsequent summer and fall extreme precipitation (DGWL leading by 4-7 months) indicate higher frequency and magnitude of extreme wet precipitation (Rm > 150 mm) occur when DGWL is within the critical depth. As DGWL decreases below 2 m, frequency and magnitude of extreme precipitation diminishes. On the other hand, DGWL has no significant relationship with subsequent extreme dry condition, there is no statistically significant trend between frequency of R < 1mm and DGWL. Generally, depth to groundwater level influence soil moisture within 0 to 2 m depth form the ground. Groundwater level close to the ground (0 - 2 m) seems likely influence subsequent extreme wet condition while not conclusive is the influence of declining groundwater level (beyond 2 m) to subsequent dry conditions. The result support the broad hypothesis that shallow groundwater can influence climate.

Cortical lamina-dependent blood volume changes in human brain at 7 T.

PubMed

Huber, Laurentius; Goense, Jozien; Kennerley, Aneurin J; Trampel, Robert; Guidi, Maria; Reimer, Enrico; Ivanov, Dimo; Neef, Nicole; Gauthier, Claudine J; Turner, Robert; Möller, Harald E

2015-02-15

Cortical layer-dependent high (sub-millimeter) resolution functional magnetic resonance imaging (fMRI) in human or animal brain can be used to address questions regarding the functioning of cortical circuits, such as the effect of different afferent and efferent connectivities on activity in specific cortical layers. The sensitivity of gradient echo (GE) blood oxygenation level-dependent (BOLD) responses to large draining veins reduces its local specificity and can render the interpretation of the underlying laminar neural activity impossible. The application of the more spatially specific cerebral blood volume (CBV)-based fMRI in humans has been hindered by the low sensitivity of the noninvasive modalities available. Here, a vascular space occupancy (VASO) variant, adapted for use at high field, is further optimized to capture layer-dependent activity changes in human motor cortex at sub-millimeter resolution. Acquired activation maps and cortical profiles show that the VASO signal peaks in gray matter at 0.8-1.6mm depth, and deeper compared to the superficial and vein-dominated GE-BOLD responses. Validation of the VASO signal change versus well-established iron-oxide contrast agent based fMRI methods in animals showed the same cortical profiles of CBV change, after normalization for lamina-dependent baseline CBV. In order to evaluate its potential of revealing small lamina-dependent signal differences due to modulations of the input-output characteristics, layer-dependent VASO responses were investigated in the ipsilateral hemisphere during unilateral finger tapping. Positive activation in ipsilateral primary motor cortex and negative activation in ipsilateral primary sensory cortex were observed. This feature is only visible in high-resolution fMRI where opposing sides of a sulcus can be investigated independently because of a lack of partial volume effects. Based on the results presented here, we conclude that VASO offers good reproducibility, high sensitivity and lower sensitivity than GE-BOLD to changes in larger vessels, making it a valuable tool for layer-dependent fMRI studies in humans. Copyright © 2014 Elsevier Inc. All rights reserved.

Remote sensing of mineral dust aerosol using AERI during the UAE2: A modeling and sensitivity study

NASA Astrophysics Data System (ADS)

Hansell, R. A.; Liou, K. N.; Ou, S. C.; Tsay, S. C.; Ji, Q.; Reid, J. S.

2008-09-01

Numerical simulations and sensitivity studies have been performed to assess the potential for using brightness temperature spectra from a ground-based Atmospheric Emitted Radiance Interferometer (AERI) during the United Arab Emirates Unified Aerosol Experiment (UAE2) for detecting/retrieving mineral dust aerosol. A methodology for separating dust from clouds and retrieving the dust IR optical depths was developed by exploiting differences between their spectral absorptive powers in prescribed thermal IR window subbands. Dust microphysical models were constructed using in situ data from the UAE2 and prior field studies while composition was modeled using refractive index data sets for minerals commonly observed around the UAE region including quartz, kaolinite, and calcium carbonate. The T-matrix, finite difference time domain (FDTD), and Lorenz-Mie light scattering programs were employed to calculate the single scattering properties for three dust shapes: oblate spheroids, hexagonal plates, and spheres. We used the Code for High-resolution Accelerated Radiative Transfer with Scattering (CHARTS) radiative transfer program to investigate sensitivity of the modeled AERI spectra to key dust and atmospheric parameters. Sensitivity studies show that characterization of the thermodynamic boundary layer is crucial for accurate AERI dust detection/retrieval. Furthermore, AERI sensitivity to dust optical depth is manifested in the strong subband slope dependence of the window region. Two daytime UAE2 cases were examined to demonstrate the present detection/retrieval technique, and we show that the results compare reasonably well to collocated AERONET Sun photometer/MPLNET micropulse lidar measurements. Finally, sensitivity of the developed methodology to the AERI's estimated MgCdTe detector nonlinearity was evaluated.

Impact of ionic current variability on human ventricular cellular electrophysiology.

PubMed

Romero, Lucía; Pueyo, Esther; Fink, Martin; Rodríguez, Blanca

2009-10-01

Abnormalities in repolarization and its rate dependence are known to be related to increased proarrhythmic risk. A number of repolarization-related electrophysiological properties are commonly used as preclinical biomarkers of arrhythmic risk. However, the variability and complexity of repolarization mechanisms make the use of cellular biomarkers to predict arrhythmic risk preclinically challenging. Our goal is to investigate the role of ionic current properties and their variability in modulating cellular biomarkers of arrhythmic risk to improve risk stratification and identification in humans. A systematic investigation into the sensitivity of the main preclinical biomarkers of arrhythmic risk to changes in ionic current conductances and kinetics was performed using computer simulations. Four stimulation protocols were applied to the ten Tusscher and Panfilov human ventricular model to quantify the impact of +/-15 and +/-30% variations in key model parameters on action potential (AP) properties, Ca(2+) and Na(+) dynamics, and their rate dependence. Simulations show that, in humans, AP duration is moderately sensitive to changes in all repolarization current conductances and in L-type Ca(2+) current (I(CaL)) and slow component of the delayed rectifier current (I(Ks)) inactivation kinetics. AP triangulation, however, is strongly dependent only on inward rectifier K(+) current (I(K1)) and delayed rectifier current (I(Kr)) conductances. Furthermore, AP rate dependence (i.e., AP duration rate adaptation and restitution properties) and intracellular Ca(2+) and Na(+) levels are highly sensitive to both I(CaL) and Na(+)/K(+) pump current (I(NaK)) properties. This study provides quantitative insights into the sensitivity of preclinical biomarkers of arrhythmic risk to variations in ionic current properties in humans. The results show the importance of sensitivity analysis as a powerful method for the in-depth validation of mathematical models in cardiac electrophysiology.

Time-of-flight range imaging for underwater applications

NASA Astrophysics Data System (ADS)

Merbold, Hannes; Catregn, Gion-Pol; Leutenegger, Tobias

2018-02-01

Precise and low-cost range imaging in underwater settings with object distances on the meter level is demonstrated. This is addressed through silicon-based time-of-flight (TOF) cameras operated with light emitting diodes (LEDs) at visible, rather than near-IR wavelengths. We find that the attainable performance depends on a variety of parameters, such as the wavelength dependent absorption of water, the emitted optical power and response times of the LEDs, or the spectral sensitivity of the TOF chip. An in-depth analysis of the interplay between the different parameters is given and the performance of underwater TOF imaging using different visible illumination wavelengths is analyzed.

The Structure and Reactivity of Alkylsiloxane Monolayers Formed by Reaction of Alkyltrichlorosilanes on Silicon Substrates

DTIC Science & Technology

1989-05-01

approximately true, theoretical and experimental studies indicate that roughnesses below 50 A (peak to valley) should have little effect on the...52 - 72. These sensitivities are those supplied by Surface Science Laboratories in the ESCA 8.OB software. They are the photoionization cross...sections calculated by Scofield , corrected for the dependence of the escape depth of an electron on its energy. Scofield , J. H. . Electon S 1976, IL, 129

Feasibility of high-resolution one-dimensional relaxation imaging at low magnetic field using a single-sided NMR scanner applied to articular cartilage.

PubMed

Rössler, Erik; Mattea, Carlos; Stapf, Siegfried

2015-02-01

Low field Nuclear Magnetic Resonance increases the contrast of the longitudinal relaxation rate in many biological tissues; one prominent example is hyaline articular cartilage. In order to take advantage of this increased contrast and to profile the depth-dependent variations, high resolution parameter measurements are carried out which can be of critical importance in an early diagnosis of cartilage diseases such as osteoarthritis. However, the maximum achievable spatial resolution of parameter profiles is limited by factors such as sensor geometry, sample curvature, and diffusion limitation. In this work, we report on high-resolution single-sided NMR scanner measurements with a commercial device, and quantify these limitations. The highest achievable spatial resolution on the used profiler, and the lateral dimension of the sensitive volume were determined. Since articular cartilage samples are usually bent, we also focus on averaging effects inside the horizontally aligned sensitive volume and their impact on the relaxation profiles. Taking these critical parameters into consideration, depth-dependent relaxation time profiles with the maximum achievable vertical resolution of 20 μm are discussed, and are correlated with diffusion coefficient profiles in hyaline articular cartilage in order to reconstruct T(2) maps from the diffusion-weighted CPMG decays of apparent relaxation rates. Copyright © 2014 Elsevier Inc. All rights reserved.

Aging influence on sensing properties of porous silica films sensitized toward ammonia

NASA Astrophysics Data System (ADS)

Tyszkiewicz, Cuma; Rogoziński, Roman

2015-12-01

The sol-gel technology allows preparation of thin silica films ranging in porosity from dense to highly porous. These films can function as a matrix binding molecules of the pH-sensitive dyes and can be utilized as the sensitive films for intensity based planar evanescent wave chemical sensors. Sensitive properties of these dyes decreases in time due to aging processes. We report characterization of weakening of sensing properties of highly porous silica films doped with the bromocresole purple (BCP). In the presence of the gaseous ammonia, the absorption band (AB) of protonated BCP centered at λ=430 nm, is shifted toward λ=591 nm due to deprotonation, resulting in the increase of sensitive films absorption in the range of wavelengths of shifted AB. Two sets of films were investigated. Films from the first one were cyclically exposed to the ammonia and stored isolated from the daylight. Films from the second set weren't exposed to the ammonia and were stored in a staining jar exposed to the daylight. A depth of the AB at λ=430 nm was measured using a spectrophotometer. A sensitivity of the films toward ammonia was measured using LED emitting at center wavelength λ=610 nm. As was shown, the sensitivity of these films exposed to the ammonia diluted in dry air, and isolated from the daylight, decreases in time exponentially. The magnitude of that decrease monotonically depends on the ammonia concentration. It was also shown that the daylight causes quick aging of films not exposed to the ammonia. A depth of the AB centered at λ=430 nm relatively quickly decreased when compared with films isolated from the daylight and exposed to the ammonia.

An Earthquake Source Sensitivity Analysis for Tsunami Propagation in the Eastern Mediterranean

NASA Astrophysics Data System (ADS)

Necmioglu, Ocal; Meral Ozel, Nurcan

2013-04-01

An earthquake source parameter sensitivity analysis for tsunami propagation in the Eastern Mediterranean has been performed based on 8 August 1303 Crete and Dodecanese Islands earthquake resulting in destructive inundation in the Eastern Mediterranean. The analysis involves 23 cases describing different sets of strike, dip, rake and focal depth, while keeping the fault area and displacement, thus the magnitude, same. The main conclusions of the evaluation are drawn from the investigation of the wave height distributions at Tsunami Forecast Points (TFP). The earthquake vs. initial tsunami source parameters comparison indicated that the maximum initial wave height values correspond in general to the changes in rake angle. No clear depth dependency is observed within the depth range considered and no strike angle dependency is observed in terms of amplitude change. Directivity sensitivity analysis indicated that for the same strike and dip, 180° shift in rake may lead to 20% change in the calculated tsunami wave height. Moreover, an approximately 10 min difference in the arrival time of the initial wave has been observed. These differences are, however, greatly reduced in the far field. The dip sensitivity analysis, performed separately for thrust and normal faulting, has both indicated that an increase in the dip angle results in the decrease of the tsunami wave amplitude in the near field approximately 40%. While a positive phase shift is observed, the period and the shape of the initial wave stays nearly the same for all dip angles at respective TFPs. These affects are, however, not observed at the far field. The resolution of the bathymetry, on the other hand, is a limiting factor for further evaluation. Four different cases were considered for the depth sensitivity indicating that within the depth ranges considered (15-60 km), the increase of the depth has only a smoothing effect on the synthetic tsunami wave height measurements at the selected TFPs. The strike sensitivity analysis showed clear phase shift with respect to the variation of the strike angles, without leading to severe variation of the initial and maximum waves at locations considered. Travel time maps for two cases corresponding to difference in the strike value (60° vs 150°) presented a more complex wave propagation for the case with 60° strike angle due to the fact that the normal of the fault plane is orthogonal to the main bathymetric structure in the region, namely the Eastern section of the Hellenic Arc between Crete and Rhodes Islands. For a given set of strike, dip and focal depth parameters, the effect of the variation in the rake angle has been evaluated in the rake sensitivity analysis. A waveform envelope composed of symmetric synthetic recordings at one TFPs could be clearly observed as a result of rake angle variations in 0-180° range. This could also lead to the conclusion that for a given magnitude (fault size and displacement), the expected maximum and minimum tsunami wave amplitudes could be evaluated as a waveform envelope rather limited to a single point of time or amplitude. The Evaluation of the initial wave arrival times follows an expected pattern controlled by the distance, wheras maximum wave arrival time distribution presents no clear pattern. Nevertheless, the distribution is rather concentrated in time domain for some TFPs. Maximum positive and minimum negative wave amplitude distributions indicates a broader range for a subgroup of TFPs, wheras for the remaining TFPs the distributions are narrow. Any deviation from the expected trend of calculating narrower ranges of amplitude distributions could be interpreted as the result o the bathymetry and focusing effects. As similar studies conducted in the different parts of the globe indicated, the main characteristics of the tsunami propagation are unique for each basin. It should be noted, however, that the synthetic measurements obtained at the TFPs in the absence of high-resolution bathymetric data, should be considered only an overall guidance. The results indicate the importance of the accuracy of earthquake source parameters for reliable tsunami predictions and the need for high-resolution bathymetric data to be able to perform calculations with higher accuracy. On the other hand, this study did not address other parameters, such as heterogeneous slip distribution and rupture duration, which affect the tsunami initiation and propagation process.

Polarization-sensitive optical coherence tomography-based imaging, parameterization, and quantification of human cartilage degeneration

NASA Astrophysics Data System (ADS)

Brill, Nicolai; Wirtz, Mathias; Merhof, Dorit; Tingart, Markus; Jahr, Holger; Truhn, Daniel; Schmitt, Robert; Nebelung, Sven

2016-07-01

Polarization-sensitive optical coherence tomography (PS-OCT) is a light-based, high-resolution, real-time, noninvasive, and nondestructive imaging modality yielding quasimicroscopic cross-sectional images of cartilage. As yet, comprehensive parameterization and quantification of birefringence and tissue properties have not been performed on human cartilage. PS-OCT and algorithm-based image analysis were used to objectively grade human cartilage degeneration in terms of surface irregularity, tissue homogeneity, signal attenuation, as well as birefringence coefficient and band width, height, depth, and number. Degeneration-dependent changes were noted for the former three parameters exclusively, thereby questioning the diagnostic value of PS-OCT in the assessment of human cartilage degeneration.

JPL Developments in Retrieval Algorithms for Geostationary Observations - Applications to H2CO

NASA Technical Reports Server (NTRS)

Kurosu, Thomas P.; Kulawik, Susan; Natraj, Vijay

2012-01-01

JPL has strong expertise in atmospheric retrievals from UV and thermal IR, and a wide range of tools to apply to observations and instrument characterization. Radiative Transfer, AMF, Inversion, Fitting, Assimilation. Tools were applied for a preliminary study of H2CO sensitivities from GEO. Results show promise for moderate/strong H2CO lading but also that low background conditions will prove a challenge. H2CO DOF are not too strongly dependent on FWHM. GEMS (Geostationary Environmental Monitoring Spectrometer) choice of 0.6 nm FWHM (?) spectral resolution is adequate for H2CO retrievals. Case study can easily be adapted to GEMS observations/instrument model for more in-depth sensitivity characterization.

The ZH ratio Analysis of Global Seismic Data

NASA Astrophysics Data System (ADS)

Yano, T.; Shikato, S.; Rivera, L.; Tanimoto, T.

2007-12-01

The ZH ratio, the ratio of vertical to horizontal component of the fundamental Rayleigh wave as a function of frequency, is an alternative approach to phase/group velocity analysis for constructing the S-wave velocity structure. In this study, teleseismic Rayleigh wave data for the frequency range between 0.004Hz to 0.04Hz is used to investigate the interior structure. We have analyzed most of the GEOSCOPE network data and some IRIS GSN stations using a technique developed by Tanimoto and Rivera (2007). Stable estimates of the ZH ratios were obtained for the frequency range for most stations. We have performed the inversion of the measured ZH ratios for the structure in the crust and mantle by using nonlinear iterative scheme. The depth sensitivity kernels for inversion are numerically calculated. Depth sensitivity of the lowest frequency extends to depths beyond 500 km but the sensitivity of the overall data for the frequency band extends down to about 300km. We found that an appropriate selection of an initial model, particularly the depth of Mohorovicic discontinuity, is important for this inversion. The inversion result depends on the initial model and turned out to be non-unique. We have constructed the initial model from the CRUST 2.0. Inversion with equal weighting to each data point tends to reduce variance of certain frequency range only. Therefore, we have developed a scheme to increase weighting to data points that do not fit well after the fifth iteration. This occurs more often for low frequency range, 0.004-0.007Hz. After fitting the lower frequency region, the low velocity zone around a depth of 100km is observed under some stations such as KIP (Kipapa, Hawaii) and ATD (Arta Cave, Djibouti). We have also carried out an analysis on the resolving power of data by examining the eigenvalues-eigenvectors of the least-squares problem. Unfortunately, the normal matrix usually has 1-2 very large eigenvalues, followed by much smaller eigenvalues. The third one is often an order of magnitude smaller. The largest eigenvalue is always dominated by an eigenfunction that has the peak at the surface. It indicates that the ZH ratio is sensitive to shallow structure but it has limited form in resolving power for underlying structure. We will report on the details on the resolving capabilities of the ZH ratios.

In vivo dosimeters for HDR brachytherapy: a comparison of a diamond detector, MOSFET, TLD, and scintillation detector.

PubMed

Lambert, Jamil; Nakano, Tatsuya; Law, Sue; Elsey, Justin; McKenzie, David R; Suchowerska, Natalka

2007-05-01

The large dose gradients in brachytherapy necessitate a detector with a small active volume for accurate dosimetry. The dosimetric performance of a novel scintillation detector (BrachyFOD) is evaluated and compared to three commercially available detectors, a diamond detector, a MOSFET, and LiF TLDs. An 192Ir HDR brachytherapy source is used to measure the depth dependence, angular dependence, and temperature dependence of the detectors. Of the commercially available detectors, the diamond detector was found to be the most accurate, but has a large physical size. The TLDs cannot provide real time readings and have depth dependent sensitivity. The MOSFET used in this study was accurate to within 5% for distances of 20 to 50 mm from the 192Ir source in water but gave errors of 30%-40% for distances greater than 50 mm from the source. The BrachyFOD was found to be accurate to within 3% for distances of 10 to 100 mm from an HDR 192Ir brachytherapy source in water. It has an angular dependence of less than 2% and the background signal created by Cerenkov radiation and fluorescence of the plastic optical fiber is insignificant compared to the signal generated in the scintillator. Of the four detectors compared in this study the BrachyFOD has the most favorable combination of characteristics for dosimetry in HDR brachytherapy.

Energy absorption buildup factors, exposure buildup factors and Kerma for optically stimulated luminescence materials and their tissue equivalence for radiation dosimetry

NASA Astrophysics Data System (ADS)

Singh, Vishwanath P.; Badiger, N. M.

2014-11-01

Optically stimulated luminescence (OSL) materials are sensitive dosimetric materials used for precise and accurate dose measurement for low-energy ionizing radiation. Low dose measurement capability with improved sensitivity makes these dosimeters very useful for diagnostic imaging, personnel monitoring and environmental radiation dosimetry. Gamma ray energy absorption buildup factors and exposure build factors were computed for OSL materials using the five-parameter Geometric Progression (G-P) fitting method in the energy range 0.015-15 MeV for penetration depths up to 40 mean free path. The computed energy absorption buildup factor and exposure buildup factor values were studied as a function of penetration depth and incident photon energy. Effective atomic numbers and Kerma relative to air of the selected OSL materials and tissue equivalence were computed and compared with that of water, PMMA and ICRU standard tissues. The buildup factors and kerma relative to air were found dependent upon effective atomic numbers. Buildup factors determined in the present work should be useful in radiation dosimetry, medical diagnostics and therapy, space dosimetry, accident dosimetry and personnel monitoring.

Optimization of the coplanar interdigital capacitive sensor

NASA Astrophysics Data System (ADS)

Huang, Yunzhi; Zhan, Zheng; Bowler, Nicola

2017-02-01

Interdigital capacitive sensors are applied in nondestructive testing and material property characterization of low-conductivity materials. The sensor performance is typically described based on the penetration depth of the electric field into the sample material, the sensor signal strength and its sensitivity. These factors all depend on the geometry and material properties of the sensor and sample. In this paper, a detailed analysis is provided, through finite element simulations, of the ways in which the sensor's geometrical parameters affect its performance. The geometrical parameters include the number of digits forming the interdigital electrodes and the ratio of digit width to their separation. In addition, the influence of the presence or absence of a metal backplane on the sample is analyzed. Further, the effects of sensor substrate thickness and material on signal strength are studied. The results of the analysis show that it is necessary to take into account a trade-off between the desired sensitivity and penetration depth when designing the sensor. Parametric equations are presented to assist the sensor designer or nondestructive evaluation specialist in optimizing the design of a capacitive sensor.

SU-E-T-391: Assessment and Elimination of the Angular Dependence of the Response of the NanoDot OSLD System in MV Beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehmann, J; University of Sydney, Sydney; RMIT University, Melbourne

2014-06-01

Purpose: Assess the angular dependence of the nanoDot OSLD system in MV X-ray beams at depths and mitigate this dependence for measurements in phantoms. Methods: Measurements for 6 MV photons at 3 cm and 10 cm depth and Monte Carlo simulations were performed. Two special holders were designed which allow a nanoDot dosimeter to be rotated around the center of its sensitive volume (5 mm diameter disk). The first holder positions the dosimeter disk perpendicular to the beam (en-face). It then rotates until the disk is parallel with the beam (edge on). This is referred to as Setup 1. Themore » second holder positions the disk parallel to the beam (edge on) for all angles (Setup 2). Monte Carlo simulations using GEANT4 considered detector and housing in detail based on microCT data. Results: An average drop in response by 1.4±0.7% (measurement) and 2.1±0.3% (Monte Carlo) for the 90° orientation compared to 0° was found for Setup 1. Monte Carlo simulations also showed a strong dependence of the effect on the composition of the sensitive layer. Assuming 100% active material (Al??O??) results in a 7% drop in response for 90° compared to 0°. Assuming the layer to be completely water, results in a flat response (within simulation uncertainty of about 1%). For Setup 2, measurements and Monte Carlo simulations found the angular dependence of the dosimeter to be below 1% and within the measurement uncertainty. Conclusion: The nanoDot dosimeter system exhibits a small angular dependence off approximately 2%. Changing the orientation of the dosimeter so that a coplanar beam arrangement always hits the detector material edge on reduces the angular dependence to within the measurement uncertainty of about 1%. This makes the dosimeter more attractive for phantom based clinical measurements and audits with multiple coplanar beams. The Australian Clinical Dosimetry Service is a joint initiative between the Australian Department of Health and the Australian Radiation Protection and Nuclear Safety Agency.« less

Initial evaluation of acoustic reflectors for the preservation of sensitive abdominal skin areas during MRgFUS treatment.

PubMed

Gorny, Krzysztof R; Chen, Shigao; Hangiandreou, Nicholas J; Hesley, Gina K; Woodrum, David A; Brown, Douglas L; Felmlee, Joel P

2009-04-21

During MR-guided focused ultrasound (MRgFUS) treatments of uterine fibroids using ExAblate(R)2000 (InSightec, Haifa, Israel), individual tissue ablations are performed extracorporeally through the patient's abdomen using an annular array FUS transducer embedded within the MR table. Ultrasound intensities in the near field are below therapeutic levels and, under normal conditions, heating of the patient skin is minimal. However, increased absorption of ultrasound energy within sensitive skin areas or areas with differing acoustic properties, such as scars, may lead to skin burns and therefore these areas must be kept outside the near field of the FUS beam. Depending on their location and size the sensitive areas may either obstruct parts of the fibroid from being treated or prevent the entire MRgFUS treatment altogether. The purpose of this work is to evaluate acoustic reflector materials that can be applied to protect skin and the underlying sensitive areas. Reflection coefficients of cork (0.88) and foam (0.91) based materials were evaluated with a hydrophone. An ExAblate 2000 MRgFUS system was used to simulate clinical treatment with discs of reflector materials placed in a near field underneath a gel phantom. MR thermometry was used to monitor temperature elevations as well as the integrity of the focal spot. The phantom measurements showed acoustic shadow zones behind the reflectors with zone depths changing between 7 and 27 mm, for reflector disc diameters increasing from 10 to 30 mm (40 mm diameter discs completely blocked the FUS beam at the depth evaluated). The effects on thermal lesions due to the presence of the reflectors in the FUS beam were found to diminish with decreasing disc diameter and increasing sonication depth. For a 20 mm diameter disc and beyond 50 mm sonication depth, thermal lesions were minimally affected by the presence of the disc. No heating was observed on the skin side of the foam reflectors, as confirmed by measurements performed with adhesive temperature labels. We present these data and discuss possible applications to clinical MRgFUS treatments.

Boreal Forest Permafrost Sensitivity Ecotypes to changes in Snow Depth and Soil Moisture

NASA Astrophysics Data System (ADS)

Dabbs, A.; Romanovsky, V. E.; Kholodov, A. L.

2017-12-01

Changes in the global climate, pronounced especially in polar regions due to their accelerated warming, are expected by many global climate models to have large impacts on the moisture budget throughout the world. Permafrost extent and the soil temperature regime are both strongly dependent on soil moisture and snow depth because of their immense effects on the thermal properties of the soil column and surface energy balance respectively. To assess how the ground thermal regime at various ecotypes may react to a change in the moisture budget, we performed a sensitivity analysis using the Geophysical Institute Permafrost Laboratory model, which simulates subsurface temperature dynamics by solving a one-dimensional nonlinear heat equation with phase change. We used snow depth and air temperature data from the Fairbanks International Airport meteorological station as forcing for this sensitivity analysis. We looked at five different ecotypes within the boreal forest region of Alaska: mixed, deciduous and black forests, willow shrubs and tundra. As a result of this analysis, we found that ecotypes with higher soil moisture contents, such as willow shrubs, are most sensitive to changes in snow depth due to the larger amount of latent heat trapped underneath the snow during the freeze up of active layer. In addition, soil within these ecotypes has higher thermal conductivity due to high saturation degree allowing for deeper seasonal freezing. Also, we found that permafrost temperatures were most sensitive to changes in soil moisture in ecotypes that were not completely saturated such as boreal forest. These ecotypes lacked complete saturation because of thick organic layers that have very high porosities or partially drained mineral soils. Contrarily, tundra had very little response to changes in soil moisture due to its thin organic layer and almost completely saturated soil column. This difference arises due to the disparity between the frozen and unfrozen thermal conductivities of the soil. In highly saturated soils, the frozen thermal conductivity of the soil can be more than double that of the unfrozen thermal conductivity while in dryer soils that ratio reduces down to less than 1.5. This difference allows the seasonal freezing to penetrate quicker and deeper causing even more latent heat to be released and trapped.

Measurements of lateral penumbra for uniform scanning proton beams under various beam delivery conditions and comparison to the XiO treatment planning system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rana, Suresh; Zeidan, Omar; Ramirez, Eric

2013-09-15

Purpose: The main purposes of this study were to (1) investigate the dependency of lateral penumbra (80%–20% distance) of uniform scanning proton beams on various factors such as air gap, proton range, modulation width, compensator thickness, and depth, and (2) compare the lateral penumbra calculated by a treatment planning system (TPS) with measurements.Methods: First, lateral penumbra was measured using solid–water phantom and radiographic films for (a) air gap, ranged from 0 to 35 cm, (b) proton range, ranged from 8 to 30 cm, (c) modulation, ranged from 2 to 10 cm, (d) compensator thickness, ranged from 0 to 20 cm,more » and (e) depth, ranged from 7 to 15 cm. Second, dose calculations were computed in a virtual water phantom using the XiO TPS with pencil beam algorithm for identical beam conditions and geometrical configurations that were used for the measurements. The calculated lateral penumbra was then compared with the measured one for both the horizontal and vertical scanning magnets of our uniform scanning proton beam delivery system.Results: The results in the current study showed that the lateral penumbra of horizontal scanning magnet was larger (up to 1.4 mm for measurement and up to 1.0 mm for TPS) compared to that of vertical scanning magnet. Both the TPS and measurements showed an almost linear increase in lateral penumbra with increasing air gap as it produced the greatest effect on lateral penumbra. Lateral penumbra was dependent on the depth and proton range. Specifically, the width of lateral penumbra was found to be always lower at shallower depth than at deeper depth within the spread out Bragg peak (SOBP) region. The lateral penumbra results were less sensitive to the variation in the thickness of compensator, whereas lateral penumbra was independent of modulation. Overall, the comparison between the results of TPS with that of measurements indicates a good agreement for lateral penumbra, with TPS predicting higher values compared to measurements.Conclusions: Lateral penumbra of uniform scanning proton beams depends on air gap, proton range, compensator thickness, and depth, whereas lateral penumbra is not dependent on modulation. The XiO TPS typically overpredicted lateral penumbra compared to measurements, within 1 mm for most cases, but the difference could be up to 2.5 mm at a deep depth and large air gap.« less

Optical absorption of suspended graphene based metal plasmonic grating in the visible range

NASA Astrophysics Data System (ADS)

Han, Y. X.; Chen, B. B.; Yang, J. B.; He, X.; Huang, J.; Zhang, J. J.; Zhang, Z. J.

2018-05-01

We employ finite-difference time-domain ( FDTD) method and Raman spectroscopy to study the properties of graphene, which is suspended on a gold/SiO2/Si grating structure with different trench depth of SiO2 layer. The absorption enhancement of suspended graphene and plasmonic resonance of metal grating are investigated in the visible range using 2D FDTD method. Moreover, it is found that the intensity of the Raman features depends very sensitively on the trench depth of SiO2 layer. Raman enhancement in our experiments is attributed to the enhanced optical absorption of graphene by near-field coupling based metal plasmonic grating. The enhanced absorption of suspended graphene modulated by localized surface plasmon resonance (LSPR) offers a potential application for opto-electromechanical devices.

The effect of the interplanetary magnetic field on sidereal variations observed at medium depth underground detectors

NASA Technical Reports Server (NTRS)

Humble, J. E.; Fenton, A. G.

1985-01-01

It has been known for some years that the intensity variations in sidereal time observed by muon detectors at moderate underground depths are sensitive to the polarity of the interplanetary magnetic field (ipmf) near the Earth. There are differences in the response to these anisotropies as observed in the Norhtern and southern hemispheres. When fully understood, the nature of the anisotropy seems likely to provide information on the 3-dimensional structure of the heliomagnetosphere, its time variations, and its linking with the local interstellar field. The summation harmonic dials for the sidereal diurnal variation during 1958 to 1982 show that there is a strong dependence on whether the ipmf near the Earth is directed outwards from the Sun or inwards it.

Numerical dispersion compensation for Partial Coherence Interferometry and Optical Coherence Tomography.

PubMed

Fercher, A; Hitzenberger, C; Sticker, M; Zawadzki, R; Karamata, B; Lasser, T

2001-12-03

Dispersive samples introduce a wavelength dependent phase distortion to the probe beam. This leads to a noticeable loss of depth resolution in high resolution OCT using broadband light sources. The standard technique to avoid this consequence is to balance the dispersion of the sample byarrangingadispersive materialinthereference arm. However, the impact of dispersion is depth dependent. A corresponding depth dependent dispersion balancing technique is diffcult to implement. Here we present a numerical dispersion compensation technique for Partial Coherence Interferometry (PCI) and Optical Coherence Tomography (OCT) based on numerical correlation of the depth scan signal with a depth variant kernel. It can be used a posteriori and provides depth dependent dispersion compensation. Examples of dispersion compensated depth scan signals obtained from microscope cover glasses are presented.

Angular dependence of the response of the nanoDot OSLD system for measurements at depth in clinical megavoltage beams.

PubMed

Lehmann, Joerg; Dunn, Leon; Lye, Jessica E; Kenny, John W; Alves, Andrew D C; Cole, Andrew; Asena, Andre; Kron, Tomas; Williams, Ivan M

2014-06-01

The purpose of this investigation was to assess the angular dependence of a commercial optically stimulated luminescence dosimeter (OSLD) dosimetry system in MV x-ray beams at depths beyond d(max) and to find ways to mitigate this dependence for measurements in phantoms. Two special holders were designed which allow a dosimeter to be rotated around the center of its sensitive volume. The dosimeter's sensitive volume is a disk, 5 mm in diameter and 0.2 mm thick. The first holder rotates the disk in the traditional way. It positions the disk perpendicular to the beam (gantry pointing to the floor) in the initial position (0°). When the holder is rotated the angle of the disk towards the beam increases until the disk is parallel with the beam ("edge on," 90°). This is referred to as Setup 1. The second holder offers a new, alternative measurement position. It positions the disk parallel to the beam for all angles while rotating around its center (Setup 2). Measurements with five to ten dosimeters per point were carried out for 6 MV at 3 and 10 cm depth. Monte Carlo simulations using GEANT4 were performed to simulate the response of the active detector material for several angles. Detector and housing were simulated in detail based on microCT data and communications with the manufacturer. Various material compositions and an all-water geometry were considered. For the traditional Setup 1 the response of the OSLD dropped on average by 1.4% ± 0.7% (measurement) and 2.1% ± 0.3% (Monte Carlo simulation) for the 90° orientation compared to 0°. Monte Carlo simulations also showed a strong dependence of the effect on the composition of the sensitive layer. Assuming the layer to completely consist of the active material (Al2O3) results in a 7% drop in response for 90° compared to 0°. Assuming the layer to be completely water, results in a flat response within the simulation uncertainty of about 1%. For the new Setup 2, measurements and Monte Carlo simulations found the angular dependence of the dosimeter to be below 1% and within the measurement uncertainty. The dosimeter system exhibits a small angular dependence of approximately 2% which needs to be considered for measurements involving other than normal incident beams angles. This applies in particular to clinical in vivo measurements where the orientation of the dosimeter is dictated by clinical circumstances and cannot be optimized as otherwise suggested here. When measuring in a phantom, the proposed new setup should be considered. It changes the orientation of the dosimeter so that a coplanar beam arrangement always hits the disk shaped detector material from the thin side and thereby reduces the angular dependence of the response to within the measurement uncertainty of about 1%. This improvement makes the dosimeter more attractive for clinical measurements with multiple coplanar beams in phantoms, as the overall measurement uncertainty is reduced. Similarly, phantom based postal audits can transition from the traditional TLD to the more accurate and convenient OSLD.

On the sensitivity of some common metallographic reagents to restoring obliterated marks on medium carbon (0.31% C) steel surfaces.

PubMed

Yin, Siaw Hui; Kuppuswamy, R

2009-01-10

Chemical etching, which is the most sensitive method to recover obliterated serial numbers on metal surfaces, has been practised quite successfully in forensic science laboratories all over the world. A large number of etchants suitable for particular metal surfaces based on empirical studies is available in the literature. This article reviews the sensitivity and efficacy of some popular etchants for recovering obliterated marks on medium carbon steel (0.31% C with ferrite-pearlite microstructure) used in automobile parts. The experiments involved engraving these carbon steel plates with some alphanumeric characters using a computer controlled machine "Gravograph" and erasing them to several depths below the bottom of their engraving depth. Seven metallographic reagents of which most of them were copper containing compounds were chosen for etching. The erased plates were etched with every one of these etchants using swabbing method. The results have revealed that Fry's reagent comprising cupric chloride 90 g, hydrochloric acid 120 mL and water 100mL provided the necessary contrast and was concluded to be the most sensitive. The same reagent was recommended by earlier workers for revealing strain lines in steel surfaces. Earlier, another reagent containing 5 g copper sulphate, 60 mL water, 30 mL (conc.) ammonium hydroxide, and 60 mL (conc.) hydrochloric acid was proved to be more sensitive to restore erased marks on low carbon steel (0.1% C with ferrite-pearlite structure) [M.A.M. Zaili, R. Kuppuswamy, H. Harun, Restoration of engraved marks on steel surfaces by etching technique, Forensic Sci. Int. 171 (2007) 27-32]. Thus the sensitivity of the etching reagent on steel surfaces appeared to be dependent on the content of carbon in the steel.

Preparing the future post-mortem analysis of beryllium-based JET and ITER samples by multi-wavelengths Raman spectroscopy on implanted Be, and co-deposited Be

NASA Astrophysics Data System (ADS)

Rusu, M. I.; Pardanaud, C.; Ferro, Y.; Giacometti, G.; Martin, C.; Addab, Y.; Roubin, P.; Minissale, M.; Ferri, L.; Virot, F.; Barrachin, M.; Lungu, C. P.; Porosnicu, C.; Dinca, P.; Lungu, M.; Köppen, M.; Hansen, P.; Linsmeier, Ch.

2017-07-01

This study demonstrates that Raman microscopy is a suitable technique for future post mortem analyses of JET and ITER plasma facing components. We focus here on laboratory deposited and bombarded samples of beryllium and beryllium carbides and start to build a reference spectral databases for fusion relevant beryllium-based materials. We identified the beryllium phonon density of states, its second harmonic and E 2G and B 2G second harmonic and combination modes for defective beryllium in the spectral range 300-700 and 700-1300 cm-1, lying close to Be-D modes of beryllium hydrides. We also identified beryllium carbide signature, Be2C, combining Raman microscopy and DFT calculation. We have shown that, depending on the optical constants of the material probed, in depth sensitivity at the nanometer scale can be performed using different wavelengths. This way, we demonstrate that multi-wavelength Raman microscopy is sensitive to in-depth stress caused by ion implantation (down to  ≈30 nm under the surface for Be) and Be/C concentration (down to 400 nm or more under the surface for Be+C), which is a main contribution of this work. The depth resolution reached can then be adapted for studying the supersaturated surface layer found on tokamak deposits.

Metrological characterization methods for confocal chromatic line sensors and optical topography sensors

NASA Astrophysics Data System (ADS)

Seppä, Jeremias; Niemelä, Karri; Lassila, Antti

2018-05-01

The increasing use of chromatic confocal technology for, e.g. fast, in-line optical topography, and measuring thickness, roughness and profiles implies a need for the characterization of various aspects of the sensors. Single-point, line and matrix versions of chromatic confocal technology, encoding depth information into wavelength, have been developed. Of these, line sensors are particularly suitable for in-line process measurement. Metrological characterization and development of practical methods for calibration and checking is needed for new optical methods and devices. Compared to, e.g. tactile methods, optical topography measurement techniques have limitations related to light wavelength and coherence, optical properties of the sample including reflectivity, specularity, roughness and colour, and definition of optical versus mechanical surfaces. In this work, metrological characterization methods for optical line sensors were developed for scale magnification and linearity, sensitivity to sample properties, and dynamic characteristics. An accurate depth scale calibration method using a single prototype groove depth sample was developed for a line sensor and validated with laser-interferometric sample tracking, attaining (sub)micrometre level or better than 0.1% scale accuracy. Furthermore, the effect of different surfaces and materials on the measurement and depth scale was studied, in particular slope angle, specularity and colour. In addition, dynamic performance, noise, lateral scale and resolution were measured using the developed methods. In the case of the LCI1200 sensor used in this study, which has a 11.3 mm  ×  2.8 mm measurement range, the instrument depth scale was found to depend only minimally on sample colour, whereas measuring steeply sloped specular surfaces in the peripheral measurement area, in the worst case, caused a somewhat larger relative sample-dependent change (1%) in scale.

Characterization of the Exradin W1 scintillator for use in radiotherapy.

PubMed

Carrasco, P; Jornet, N; Jordi, O; Lizondo, M; Latorre-Musoll, A; Eudaldo, T; Ruiz, A; Ribas, M

2015-01-01

To evaluate the main characteristics of the Exradin W1 scintillator as a dosimeter and to estimate measurement uncertainties when used in radiotherapy. We studied the calibration procedure, energy and modality dependence, short-term repeatability, dose-response linearity, angular dependence, temperature dependence, time to reach thermal equilibrium, dose-rate dependence, water-equivalent depth of the effective measurement point, and long-term stability. An uncertainty budget was derived for relative and absolute dose measurements in photon and electron beams. Exradin W1 showed a temperature dependence of -0.225% °C(-1). The loss of sensitivity with accumulated dose decreased with use. The sensitivity of Exradin W1 was energy independent for high-energy photon and electron beams. All remaining dependencies of Exradin W1 were around or below 0.5%, leading to an uncertainty budget of about 1%. When a dual channel electrometer with automatic trigger was not used, timing effects became significant, increasing uncertainties by one order of magnitude. The Exradin W1 response is energy independent for high energy x-rays and electron beams, and only one calibration coefficient is needed. A temperature correction factor should be applied to keep uncertainties around 2% for absolute dose measurements and around 1% for relative measurements in high-energy photon and electron beams. The Exradin W1 scintillator is an excellent alternative to detectors such as diodes for relative dose measurements.

The effects of collision orientation and energy dependence in multinucleon transfer reactions

NASA Astrophysics Data System (ADS)

Li, Jingjing; Li, Cheng; Wen, Peiwei; Zhang, Feng-Shou

2018-05-01

Multinucleon transfer (MNT) reaction 136Xe+208Pb near Coulomb barrier energies are investigated within the dinuclear system (DNS) model. It is found that the collision orientation has an important influence on the mass distributions attributed to the depth of pocket in the driving potential. The calculation results of the isotopic production show that the energy dependence in neutron-deficient side is more sensitive than that in neutron-rich side. The production of the N = 126 isotones are calculated by GRAZING model, DNS+GEMINI model, and ImQMD+GEMINI model, respectively. It demonstrates that MNT reaction is a promising way to produce neutron-rich isotopes in the region of the neutron shell closure N = 126.

Contaminant transport in soil with depth-dependent reaction coefficients and time-dependent boundary conditions.

PubMed

Gao, Guangyao; Fu, Bojie; Zhan, Hongbin; Ma, Ying

2013-05-01

Predicting the fate and movement of contaminant in soils and groundwater is essential to assess and reduce the risk of soil contamination and groundwater pollution. Reaction processes of contaminant often decreased monotonously with depth. Time-dependent input sources usually occurred at the inlet of natural or human-made system such as radioactive waste disposal site. This study presented a one-dimensional convection-dispersion equation (CDE) for contaminant transport in soils with depth-dependent reaction coefficients and time-dependent inlet boundary conditions, and derived its analytical solution. The adsorption coefficient and degradation rate were represented as sigmoidal functions of soil depth. Solute breakthrough curves (BTCs) and concentration profiles obtained from CDE with depth-dependent and constant reaction coefficients were compared, and a constant effective reaction coefficient, which was calculated by arithmetically averaging the depth-dependent reaction coefficient, was proposed to reflect the lumped depth-dependent reaction effect. With the effective adsorption coefficient and degradation rate, CDE could produce similar BTCs and concentration profiles as those from CDE with depth-dependent reactions in soils with moderate chemical heterogeneity. In contrast, the predicted concentrations of CDE with fitted reaction coefficients at a certain depth departed significantly from those of CDE with depth-dependent reactions. Parametric analysis was performed to illustrate the effects of sinusoidally and exponentially decaying input functions on solute BTCs. The BTCs and concentration profiles obtained from the solutions for finite and semi-infinite domain were compared to investigate the effects of effluent boundary condition. The finite solution produced higher concentrations at the increasing limb of the BTCs and possessed a higher peak concentration than the semi-infinite solution which had a slightly long tail. Furthermore, the finite solution gave a higher concentration in the immediate vicinity of the exit boundary than the semi-infinite solution. The applicability of the proposed model was tested with a field herbicide and tracer leaching experiment in an agricultural area of northeastern Greece. The simulation results indicated that the proposed CDE with depth-dependent reaction coefficients was able to capture the evolution of metolachlor concentration at the upper soil depths. However, the simulation results at deep depths were not satisfactory as the proposed model did not account for preferential flow observed in the field. Copyright © 2013 Elsevier Ltd. All rights reserved.

Broadband seismic noise attenuation versus depth at the Albuquerque Seismological Laboratory

USGS Publications Warehouse

Hutt, Charles R.; Ringler, Adam; Gee, Lind

2017-01-01

Seismic noise induced by atmospheric processes such as wind and pressure changes can be a major contributor to the background noise observed in many seismograph stations, especially those installed at or near the surface. Cultural noise such as vehicle traffic or nearby buildings with air handling equipment also contributes to seismic background noise. Such noise sources fundamentally limit our ability to resolve earthquake‐generated signals. Many previous seismic noise versus depth studies focused separately on either high‐frequency (>1  Hz">>1  Hz) or low‐frequency (<0.05  Hz"><0.05  Hz) bands. In this study, we use modern high‐quality broadband (BB) and very broadband (VBB) seismometers installed at depths ranging from 1.5 to 188 m at the Albuquerque Seismological Laboratory to evaluate noise attenuation as a function of depth over a broad range of frequencies (0.002–50 Hz). Many modern seismometer deployments use BB or VBB seismometers installed at various depths, depending on the application. These depths range from one‐half meter or less in aftershock study deployments, to one or two meters in the Incorporated Research Institutions for Seismology Transportable Array (TA), to a few meters (shallow surface vaults) up to 100 m or more (boreholes) in the permanent observatories of the Global Seismographic Network (GSN). It is important for managers and planners of these and similar arrays and networks of seismograph stations to understand the attenuation of surface‐generated noise versus depth so that they can achieve desired performance goals within their budgets as well as their frequency band of focus. The results of this study will assist in decisions regarding BB and VBB seismometer installation depths. In general, we find that greater installation depths are better and seismometer emplacement in hard rock is better than in soil. Attenuation for any given depth varies with frequency. More specifically, we find that the dependence of depth will be application dependent based on the frequency band and sensitive axes of interest. For quick deployments (like aftershock studies), 1 m may be deep enough to produce good data, especially when the focus is on vertical data where temperature stability fundamentally limits the low‐frequency noise levels and little low‐frequency data will be used. For temporary (medium‐term) deployments (e.g., TA) where low cost can be very important, 2–3 m should be sufficient, but such shallow installations will limit the ability to resolve low‐frequency signals, especially on horizontal components. Of course, one should try for maximum burial depth within the budget when there is interest in using the data for low‐frequency applications. For long‐term deployments like the permanent observatories of the GSN and similar networks, 100–200 m depth in hard rock is desirable to achieve lowest noise, although 30–60 m may be acceptable.

Reconstructing Space- and Energy-Dependent Exciton Generation in Solution-Processed Inverted Organic Solar Cells.

PubMed

Wang, Yuheng; Zhang, Yajie; Lu, Guanghao; Feng, Xiaoshan; Xiao, Tong; Xie, Jing; Liu, Xiaoyan; Ji, Jiahui; Wei, Zhixiang; Bu, Laju

2018-04-25

Photon absorption-induced exciton generation plays an important role in determining the photovoltaic properties of donor/acceptor organic solar cells with an inverted architecture. However, the reconstruction of light harvesting and thus exciton generation at different locations within organic inverted device are still not well resolved. Here, we investigate the film depth-dependent light absorption spectra in a small molecule donor/acceptor film. Including depth-dependent spectra into an optical transfer matrix method allows us to reconstruct both film depth- and energy-dependent exciton generation profiles, using which short-circuit current and external quantum efficiency of the inverted device are simulated and compared with the experimental measurements. The film depth-dependent spectroscopy, from which we are able to simultaneously reconstruct light harvesting profile, depth-dependent composition distribution, and vertical energy level variations, provides insights into photovoltaic process. In combination with appropriate material processing methods and device architecture, the method proposed in this work will help optimizing film depth-dependent optical/electronic properties for high-performance solar cells.

Improving the depth sensitivity of time-resolved measurements by extracting the distribution of times-of-flight

PubMed Central

Diop, Mamadou; St. Lawrence, Keith

2013-01-01

Time-resolved (TR) techniques provide a means of discriminating photons based on their time-of-flight. Since early arriving photons have a lower probability of probing deeper tissue than photons with long time-of-flight, time-windowing has been suggested as a method for improving depth sensitivity. However, TR measurements also contain instrument contributions (instrument-response-function, IRF), which cause temporal broadening of the measured temporal point-spread function (TPSF) compared to the true distribution of times-of-flight (DTOF). The purpose of this study was to investigate the influence of the IRF on the depth sensitivity of TR measurements. TPSFs were acquired on homogeneous and two-layer tissue-mimicking phantoms with varying optical properties. The measured IRF and TPSFs were deconvolved using a stable algorithm to recover the DTOFs. The microscopic Beer-Lambert law was applied to the TPSFs and DTOFs to obtain depth-resolved absorption changes. In contrast to the DTOF, the latest part of the TPSF was not the most sensitive to absorption changes in the lower layer, which was confirmed by computer simulations. The improved depth sensitivity of the DTOF was illustrated in a pig model of the adult human head. Specifically, it was shown that dynamic absorption changes obtained from the late part of the DTOFs recovered from TPSFs acquired by probes positioned on the scalp were similar to absorption changes measured directly on the brain. These results collectively demonstrate that this method improves the depth sensitivity of TR measurements by removing the effects of the IRF. PMID:23504445

Characterizing energy dependence and count rate performance of a dual scintillator fiber-optic detector for computed tomography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoerner, Matthew R., E-mail: mrh5038@ufl.edu; Stepusin, Elliott J.; Hyer, Daniel E.

Purpose: Kilovoltage (kV) x-rays pose a significant challenge for radiation dosimetry. In the kV energy range, even small differences in material composition can result in significant variations in the absorbed energy between soft tissue and the detector. In addition, the use of electronic systems in light detection has demonstrated measurement losses at high photon fluence rates incident to the detector. This study investigated the feasibility of using a novel dual scintillator detector and whether its response to changes in beam energy from scatter and hardening is readily quantified. The detector incorporates a tissue-equivalent plastic scintillator and a gadolinium oxysulfide scintillator,more » which has a higher sensitivity to scatter x-rays. Methods: The detector was constructed by coupling two scintillators: (1) small cylindrical plastic scintillator, 500 μm in diameter and 2 mm in length, and (2) 100 micron sheet of gadolinium oxysulfide 500 μm in diameter, each to a 2 m long optical fiber, which acts as a light guide to transmit scintillation photons from the sensitive element to a photomultiplier tube. Count rate linearity data were obtained from a wide range of exposure rates delivered from a radiological x-ray tube by adjusting the tube current. The data were fitted to a nonparalyzable dead time model to characterize the time response. The true counting rate was related to the reference free air dose air rate measured with a 0.6 cm{sup 3} Radcal{sup ®} thimble chamber as described in AAPM Report No. 111. Secondary electron and photon spectra were evaluated using Monte Carlo techniques to analyze ionization quenching and photon energy-absorption characteristics from free-in-air and in phantom measurements. The depth/energy dependence of the detector was characterized using a computed tomography dose index QA phantom consisting of nested adult head and body segments. The phantom provided up to 32 cm of acrylic with a compatible 0.6 cm{sup 3} calibrated ionization chamber to measure the reference air kerma. Results: Each detector exhibited counting losses of 5% when irradiated at a dose rate of 26.3 mGy/s (Gadolinium) and 324.3 mGy/s (plastic). The dead time of the gadolinium oxysulfide detector was determined to be 48 ns, while the dead time of the plastic scintillating detector was unable to accurately be calculated due to poor counting statistics from low detected count rates. Noticeable depth/energy dependence was observed for the plastic scintillator for depths greater than 16 cm of acrylic that was not present for measurements using the gadolinium oxysulfide scintillator, leading us to believe that quenching may play a larger role in the depth dependence of the plastic scintillator than the incident x-ray energy spectrum. When properly corrected for dead time effects, the energy response of the gadolinium oxysulfide scintillator is consistent with the plastic scintillator. Using the integrated dual detector method was superior to each detector individually as the depth-dependent measure of dose was correctable to less than 8% between 100 and 135 kV. Conclusions: The dual scintillator fiber-optic detector accommodates a methodology for energy dependent corrections of the plastic scintillator, improving the overall accuracy of the dosimeter across the range of diagnostic energies.« less

Characterizing energy dependence and count rate performance of a dual scintillator fiber-optic detector for computed tomography.

PubMed

Hoerner, Matthew R; Stepusin, Elliott J; Hyer, Daniel E; Hintenlang, David E

2015-03-01

Kilovoltage (kV) x-rays pose a significant challenge for radiation dosimetry. In the kV energy range, even small differences in material composition can result in significant variations in the absorbed energy between soft tissue and the detector. In addition, the use of electronic systems in light detection has demonstrated measurement losses at high photon fluence rates incident to the detector. This study investigated the feasibility of using a novel dual scintillator detector and whether its response to changes in beam energy from scatter and hardening is readily quantified. The detector incorporates a tissue-equivalent plastic scintillator and a gadolinium oxysulfide scintillator, which has a higher sensitivity to scatter x-rays. The detector was constructed by coupling two scintillators: (1) small cylindrical plastic scintillator, 500 μm in diameter and 2 mm in length, and (2) 100 micron sheet of gadolinium oxysulfide 500 μm in diameter, each to a 2 m long optical fiber, which acts as a light guide to transmit scintillation photons from the sensitive element to a photomultiplier tube. Count rate linearity data were obtained from a wide range of exposure rates delivered from a radiological x-ray tube by adjusting the tube current. The data were fitted to a nonparalyzable dead time model to characterize the time response. The true counting rate was related to the reference free air dose air rate measured with a 0.6 cm(3) Radcal(®) thimble chamber as described in AAPM Report No. 111. Secondary electron and photon spectra were evaluated using Monte Carlo techniques to analyze ionization quenching and photon energy-absorption characteristics from free-in-air and in phantom measurements. The depth/energy dependence of the detector was characterized using a computed tomography dose index QA phantom consisting of nested adult head and body segments. The phantom provided up to 32 cm of acrylic with a compatible 0.6 cm(3) calibrated ionization chamber to measure the reference air kerma. Each detector exhibited counting losses of 5% when irradiated at a dose rate of 26.3 mGy/s (Gadolinium) and 324.3 mGy/s (plastic). The dead time of the gadolinium oxysulfide detector was determined to be 48 ns, while the dead time of the plastic scintillating detector was unable to accurately be calculated due to poor counting statistics from low detected count rates. Noticeable depth/energy dependence was observed for the plastic scintillator for depths greater than 16 cm of acrylic that was not present for measurements using the gadolinium oxysulfide scintillator, leading us to believe that quenching may play a larger role in the depth dependence of the plastic scintillator than the incident x-ray energy spectrum. When properly corrected for dead time effects, the energy response of the gadolinium oxysulfide scintillator is consistent with the plastic scintillator. Using the integrated dual detector method was superior to each detector individually as the depth-dependent measure of dose was correctable to less than 8% between 100 and 135 kV. The dual scintillator fiber-optic detector accommodates a methodology for energy dependent corrections of the plastic scintillator, improving the overall accuracy of the dosimeter across the range of diagnostic energies.

Time-resolved measurements in diffuse reflectance: effects of the instrument response function of different detection systems on the depth sensitivity

NASA Astrophysics Data System (ADS)

Puszka, Agathe; Planat-Chrétien, Anne; Berger, Michel; Hervé, Lionel; Dinten, Jean-Marc

2014-02-01

We demonstrate the loss of depth sensitivity induced by the instrument response function on reflectance time-resolved diffuse optical tomography through the comparison of 3 detection systems: on one hand a photomultiplier tube (PMT) and a hybrid PMT coupled with a time-correlated single-photon counting card and on the other hand a high rate intensified camera. We experimentally evaluate the depth sensitivity achieved for each detection module with an absorbing inclusion embedded in a turbid medium. The different interfiber distances of 5, 10 and 15 mm are considered. Finally, we determine a maximal depth reached for each detection system by using 3D tomographic reconstructions based on the Mellin-Laplace transform.

Is Grey Level a Suitable Alternative to Low-Contrast Penetration as a Serial Measure of Sensitivity in Computerised Ultrasound Quality Assurance?

PubMed

Dudley, Nicholas J; Gibson, Nicholas M

2017-02-01

The aim of this study was to test the hypothesis that grey levels are a suitable alternative measure of sensitivity in ultrasound imaging quality assurance, as there are several caveats in the use of penetration depth. In a primary cohort of nine probes, where measurements had been made for 6 to 34 mo, both penetration depth and mean grey level fell below tolerance for six probes; both penetration depth and mean grey level remained within tolerance for three probes. In a secondary cohort where a measurement programme had been in place for a shorter period, grey level and/or penetration depth fell below tolerance in 15 of 66 probes; the sensitivity and specificity of at least 10% loss of grey level in predicting >5% loss in penetration depth were 91% and 93%, respectively. A loss of grey level accompanies a loss of penetration and provides a suitable alternative measure of sensitivity. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.

Red fluorescence of the triplefin Tripterygion delaisi is increasingly visible against background light with increasing depth.

PubMed

Bitton, Pierre-Paul; Harant, Ulrike K; Fritsch, Roland; Champ, Connor M; Temple, Shelby E; Michiels, Nico K

2017-03-01

The light environment in water bodies changes with depth due to the absorption of short and long wavelengths. Below 10 m depth, red wavelengths are almost completely absent rendering any red-reflecting animal dark and achromatic. However, fluorescence may produce red coloration even when red light is not available for reflection. A large number of marine taxa including over 270 fish species are known to produce red fluorescence, yet it is unclear under which natural light environment fluorescence contributes perceptively to their colours. To address this question we: (i) characterized the visual system of Tripterygion delaisi, which possesses fluorescent irides, (ii) separated the colour of the irides into its reflectance and fluorescence components and (iii) combined these data with field measurements of the ambient light environment to calculate depth-dependent perceptual chromatic and achromatic contrasts using visual modelling. We found that triplefins have cones with at least three different spectral sensitivities, including differences between the two members of the double cones, giving them the potential for trichromatic colour vision. We also show that fluorescence contributes increasingly to the radiance of the irides with increasing depth. Our results support the potential functionality of red fluorescence, including communicative roles such as species and sex identity, and non-communicative roles such as camouflage.

Smoke optical depths - Magnitude, variability, and wavelength dependence

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Russell, P. B.; Colburn, D. A.; Ackerman, T. P.; Allen, D. A.

1988-01-01

An airborne autotracking sun-photometer has been used to measure magnitudes, temporal/spatial variabilities, and the wavelength dependence of optical depths in the near-ultraviolet to near-infrared spectrum of smoke from two forest fires and one jet fuel fire and of background air. Jet fuel smoke optical depths were found to be generally less wavelength dependent than background aerosol optical depths. Forest fire smoke optical depths, however, showed a wide range of wavelength depedences, such as incidents of wavelength-independent extinction.

Dose-response curve of EBT, EBT2, and EBT3 radiochromic films to synchrotron-produced monochromatic x-ray beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, Thomas A. D.; Hogstrom, Kenneth R.; Alvarez, Diane

Purpose: This work investigates the dose-response curves of GAFCHROMIC{sup Registered-Sign} EBT, EBT2, and EBT3 radiochromic films using synchrotron-produced monochromatic x-ray beams. EBT2 film is being utilized for dose verification in photoactivated Auger electron therapy at the Louisiana State University Center for Advanced Microstructures and Devices (CAMD) synchrotron facility. Methods: Monochromatic beams of 25, 30, and 35 keV were generated on the tomography beamline at CAMD. Ion chamber depth-dose measurements were used to determine the dose delivered to films irradiated at depths from 0.7 to 8.5 cm in a 10 Multiplication-Sign 10 Multiplication-Sign 10-cm{sup 3} polymethylmethacrylate phantom. AAPM TG-61 protocol wasmore » applied to convert measured ionization into dose. Films were digitized using an Epson 1680 Professional flatbed scanner and analyzed using the net optical density (NOD) derived from the red channel. A dose-response curve was obtained at 35 keV for EBT film, and at 25, 30, and 35 keV for EBT2 and EBT3 films. Calibrations of films for 4 MV x-rays were obtained for comparison using a radiotherapy accelerator at Mary Bird Perkins Cancer Center. Results: The sensitivity (NOD per unit dose) of EBT film at 35 keV relative to that for 4-MV x-rays was 0.73 and 0.76 for doses 50 and 100 cGy, respectively. The sensitivity of EBT2 film at 25, 30, and 35 keV relative to that for 4-MV x-rays varied from 1.09-1.07, 1.23-1.17, and 1.27-1.19 for doses 50-200 cGy, respectively. For EBT3 film the relative sensitivity was within 3% of unity for all three monochromatic x-ray beams. Conclusions: EBT and EBT2 film sensitivity showed strong energy dependence over an energy range of 25 keV-4 MV, although this dependence becomes weaker for larger doses. EBT3 film shows weak energy dependence, indicating that it would be a better dosimeter for kV x-ray beams where beam hardening effects can result in large changes in the effective energy.« less

Modified Kelvin Equations for Capillary Condensation in Narrow and Wide Grooves

NASA Astrophysics Data System (ADS)

Malijevský, Alexandr; Parry, Andrew O.

2018-03-01

We consider the location and order of capillary condensation transitions occurring in deep grooves of width L and depth D . For walls that are completely wet by liquid (contact angle θ =0 ) the transition is continuous and its location is not sensitive to the depth of the groove. However, for walls that are partially wet by liquid, where the transition is first order, we show that the pressure at which it occurs is determined by a modified Kelvin equation characterized by an edge contact angle θE describing the shape of the meniscus formed at the top of the groove. The dependence of θE on the groove depth D relies, in turn, on whether corner menisci are formed at the bottom of the groove in the low density gaslike phase. While for macroscopically wide grooves these are always present when θ <45 ° we argue that their formation is inhibited in narrow grooves. This has a number of implications including that the local pinning of the meniscus and location of the condensation transition is different depending on whether the contact angle is greater or less than a universal value θ*≈31 °. Our arguments are supported by detailed microscopic density functional theory calculations that show that the modified Kelvin equation remains highly accurate even when L and D are of the order of tens of molecular diameters.

Reliability-based management of buried pipelines considering external corrosion defects

NASA Astrophysics Data System (ADS)

Miran, Seyedeh Azadeh

Corrosion is one of the main deteriorating mechanisms that degrade the energy pipeline integrity, due to transferring corrosive fluid or gas and interacting with corrosive environment. Corrosion defects are usually detected by periodical inspections using in-line inspection (ILI) methods. In order to ensure pipeline safety, this study develops a cost-effective maintenance strategy that consists of three aspects: corrosion growth model development using ILI data, time-dependent performance evaluation, and optimal inspection interval determination. In particular, the proposed study is applied to a cathodic protected buried steel pipeline located in Mexico. First, time-dependent power-law formulation is adopted to probabilistically characterize growth of the maximum depth and length of the external corrosion defects. Dependency between defect depth and length are considered in the model development and generation of the corrosion defects over time is characterized by the homogenous Poisson process. The growth models unknown parameters are evaluated based on the ILI data through the Bayesian updating method with Markov Chain Monte Carlo (MCMC) simulation technique. The proposed corrosion growth models can be used when either matched or non-matched defects are available, and have ability to consider newly generated defects since last inspection. Results of this part of study show that both depth and length growth models can predict damage quantities reasonably well and a strong correlation between defect depth and length is found. Next, time-dependent system failure probabilities are evaluated using developed corrosion growth models considering prevailing uncertainties where three failure modes, namely small leak, large leak and rupture are considered. Performance of the pipeline is evaluated through failure probability per km (or called a sub-system) where each subsystem is considered as a series system of detected and newly generated defects within that sub-system. Sensitivity analysis is also performed to determine to which incorporated parameter(s) in the growth models reliability of the studied pipeline is most sensitive. The reliability analysis results suggest that newly generated defects should be considered in calculating failure probability, especially for prediction of long-term performance of the pipeline and also, impact of the statistical uncertainty in the model parameters is significant that should be considered in the reliability analysis. Finally, with the evaluated time-dependent failure probabilities, a life cycle-cost analysis is conducted to determine optimal inspection interval of studied pipeline. The expected total life-cycle costs consists construction cost and expected costs of inspections, repair, and failure. The repair is conducted when failure probability from any described failure mode exceeds pre-defined probability threshold after each inspection. Moreover, this study also investigates impact of repair threshold values and unit costs of inspection and failure on the expected total life-cycle cost and optimal inspection interval through a parametric study. The analysis suggests that a smaller inspection interval leads to higher inspection costs, but can lower failure cost and also repair cost is less significant compared to inspection and failure costs.

How to reinforce perception of depth in single two-dimensional pictures

NASA Technical Reports Server (NTRS)

Nagata, S.

1989-01-01

The physical conditions of the display of single 2-D pictures, which produce images realistically, were studied by using the characteristics of the intake of the information for visual depth perception. Depth sensitivity, which is defined as the ratio of viewing distance to depth discrimination threshold, was introduced in order to evaluate the availability of various cues for depth perception: binocular parallax, motion parallax, accommodation, convergence, size, texture, brightness, and air-perspective contrast. The effects of binocular parallax in different conditions, the depth sensitivity of which is greatest at a distance of up to about 10 m, were studied with the new versatile stereoscopic display. From these results, four conditions to reinforce the perception of depth in single pictures were proposed, and these conditions are met by the old viewing devices and the new high-definition and wide television displays.

Sensitivity of greenhouse summer dryness to changes in plant rooting characteristics

USGS Publications Warehouse

Milly, P.C.D.

1997-01-01

A possible consequence of increased concentrations of greenhouse gases in Earth's atmosphere is "summer dryness," a decrease of summer plant-available soil water in middle latitudes, caused by increased availability of energy to drive evapotranspiration. Results from a numerical climate model indicate that summer dryness and related changes of land-surface water balances are highly sensitive to possible concomitant changes of plant-available water-holding capacity of soil, which depends on plant rooting depth and density. The model suggests that a 14% decrease of the soil volume whose water is accessible to plant roots would generate the same summer dryness, by one measure, as an equilibrium doubling of atmospheric carbon dioxide. Conversely, a 14% increase of that soil volume would be sufficient to offset the summer dryness associated with carbon-dioxide doubling. Global and regional changes in rooting depth and density may result from (1) plant and plant-community responses to greenhouse warming, to carbon-dioxide fertilization, and to associated changes in the water balance and (2) anthropogenic deforestation and desertification. Given their apparently critical role, heretofore ignored, in global hydroclimatic change, such changes of rooting characteristics should be carefully evaluated using ecosystem observations, theory, and models.

Understanding the time-lag effect of terrestrial ecosystem response to drought: a regional case study of the 2000s Millennium Drought in Australia

NASA Astrophysics Data System (ADS)

Zhao, M.; A, G.; Velicogna, I.; Kimball, J. S.

2016-12-01

Drought is one of the major drivers of the reduction in terrestrial ecosystem productivity. Ecosystem productivity may not primarily be driven by present moisture conditions. Instead, earlier drought conditions may have the largest impact on vegetation growth. We investigate this time-lag effect in Australia by comparing MODIS NDVI data with multiple drought metrics that are sensitive to water deficits at different soil depths. These metrics include 1) soil moisture (SM) from microwave satellite-retrievals that is sensitive to top-centimeter SM variations; 2) the Palmer drought severity index (PDSI) which is sensitive to atmosphere moisture demand and shallow-depth ( 1 meter) SM changes; 3) the newly developed GRACE drought severity index (GRACE-DSI) that is sensitive to changes in overall terrestrial water storage component of the hydrologic cycle and complements satellite SM observations and the PDSI by providing information about deep groundwater storage changes. We quantify the temporal lags between NDVI and these drought metrics during 2002-2014. We find that the NDVI closely evolves with the GRACE-DSI but lags 1-3 months behind the PDSI and satellite-retrievals of SM in western Australia. This pattern however is reverse in eastern Australia. These contrasting NDVI response patterns indicate that vegetation in western Australia is more sensitive to water storage in relatively deeper soil depths than vegetation in the east. This suggests that, in western Australia, vegetation might experience a protracted recovery period after extreme drought since, usually, moisture recharge in deeper soil depths takes a relatively longer period. We conclude that the time-lag effect in Australia is associated with the relative depth of SM to which vegetation is most sensitive. We suggest that characterizing the relative vegetation moisture sensitive depth at the global scale is important for understanding the nature and pace of terrestrial ecosystem recovery from extreme drought events under the background of global climate change.

Extracting Depth From Motion Parallax in Real-World and Synthetic Displays

NASA Technical Reports Server (NTRS)

Hecht, Heiko; Kaiser, Mary K.; Aiken, William; Null, Cynthia H. (Technical Monitor)

1994-01-01

In psychophysical studies on human sensitivity to visual motion parallax (MP), the use of computer displays is pervasive. However, a number of potential problems are associated with such displays: cue conflicts arise when observers accommodate to the screen surface, and observer head and body movements are often not reflected in the displays. We investigated observers' sensitivity to depth information in MP (slant, depth order, relative depth) using various real-world displays and their computer-generated analogs. Angle judgments of real-world stimuli were consistently superior to judgments that were based on computer-generated stimuli. Similar results were found for perceived depth order and relative depth. Perceptual competence of observers tends to be underestimated in research that is based on computer generated displays. Such findings cannot be generalized to more realistic viewing situations.

Crustal seismic structure of Tohoku region, Japan constrained by ambient noises

NASA Astrophysics Data System (ADS)

Chen, K. X.; Gung, Y.; Kuo, B. Y.; Huang, T. Y.

2016-12-01

We present 3D crustal models of Vs and Vs azimuthal anisotropy of Tohoku region, Japan. We construct the models by using short to intermediate periods of Rayleigh waves retreated from noise interferometry and a wavelet-based multi-scale inversion technique. We employ the Welch's method to derive the empirical Green's functions (EGF) of Rayleigh waves from one year of continuous records of 123 short-period stations of the dense high-sensitivity seismograph network (Hi-net), operated by National Research Institute for Earth Science and Disaster Prevention (NIED). We compute EGFs for about 4000 station pairs with interstation distance less than 300 km. For each qualified EGF, we measure the dispersion in the period range from 2 to 18 seconds. While our results are still at the preliminary stage, we have noticed few interesting features in the models: (1) the quasi-N-S trend volcano front seems to be a major boundary for the variations of both velocity and anisotropy, with the eastern part characterized by higher Vs and the western part by low Vs anomalies, consistent with their corresponding surface geology; (2) patterns of the Vs azimuthal anisotropy demonstrate a clear depth-dependent variation, with fast polarization direction (FPD) parallels the strike of the island at the shallow crust; at the larger depths, the FPD gradually rotates to the direction of absolute plate motion in the SW region, and is getting complicated in the NW region, respectively. We present the revealed depth-dependent anisotropy and discuss the tectonic implications of our models. Key words: Tohoku, ambient noise, seismic anisotropy, surface wave tomography We present 3D crustal models of Vs and Vs azimuthal anisotropy of Tohoku region, Japan. We construct the models by using short to intermediate periods of Rayleigh waves retreated from noise interferometry and a wavelet-based multi-scale inversion technique. We employ the Welch's method to derive the empirical Green's functions (EGF) of Rayleigh waves from one year of continuous records of 123 short-period stations of the dense high-sensitivity seismograph network (Hi-net), operated by National Research Institute for Earth Science and Disaster Prevention (NIED). We compute EGFs for about 4000 station pairs with interstation distance less than 300 km. For each qualified EGF, we measure the dispersion in the period range from 2 to 18 seconds. While our results are still at the preliminary stage, we have noticed few interesting features in the models: (1) the quasi-N-S trend volcano front seems to be a major boundary for the variations of both velocity and anisotropy, with the eastern part characterized by higher Vs and the western part by low Vs anomalies, consistent with their corresponding surface geology; (2) patterns of the Vs azimuthal anisotropy demonstrate a clear depth-dependent variation, with fast polarization direction (FPD) parallels the strike of the island at the shallow crust; at the larger depths, the FPD gradually rotates to the direction of absolute plate motion in the SW region, and is getting complicated in the NW region, respectively. We present the revealed depth-dependent anisotropy and discuss the tectonic implications of our models. Key words: Tohoku, ambient noise, seismic anisotropy, surface wave tomography

Characterization of a MOSkin detector for in vivo skin dose measurements during interventional radiology procedures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Safari, M. J.; Wong, J. H. D.; Ng, K. H., E-mail: ngkh@um.edu.my

2015-05-15

Purpose: The MOSkin is a MOSFET detector designed especially for skin dose measurements. This detector has been characterized for various factors affecting its response for megavoltage photon beams and has been used for patient dose measurements during radiotherapy procedures. However, the characteristics of this detector in kilovoltage photon beams and low dose ranges have not been studied. The purpose of this study was to characterize the MOSkin detector to determine its suitability for in vivo entrance skin dose measurements during interventional radiology procedures. Methods: The calibration and reproducibility of the MOSkin detector and its dependency on different radiation beam qualitiesmore » were carried out using RQR standard radiation qualities in free-in-air geometry. Studies of the other characterization parameters, such as the dose linearity and dependency on exposure angle, field size, frame rate, depth-dose, and source-to-surface distance (SSD), were carried out using a solid water phantom under a clinical x-ray unit. Results: The MOSkin detector showed good reproducibility (94%) and dose linearity (99%) for the dose range of 2 to 213 cGy. The sensitivity did not significantly change with the variation of SSD (±1%), field size (±1%), frame rate (±3%), or beam energy (±5%). The detector angular dependence was within ±5% over 360° and the dose recorded by the MOSkin detector in different depths of a solid water phantom was in good agreement with the Markus parallel plate ionization chamber to within ±3%. Conclusions: The MOSkin detector proved to be reliable when exposed to different field sizes, SSDs, depths in solid water, dose rates, frame rates, and radiation incident angles within a clinical x-ray beam. The MOSkin detector with water equivalent depth equal to 0.07 mm is a suitable detector for in vivo skin dosimetry during interventional radiology procedures.« less

Characterization of a MOSkin detector for in vivo skin dose measurements during interventional radiology procedures.

PubMed

Safari, M J; Wong, J H D; Ng, K H; Jong, W L; Cutajar, D L; Rosenfeld, A B

2015-05-01

The MOSkin is a MOSFET detector designed especially for skin dose measurements. This detector has been characterized for various factors affecting its response for megavoltage photon beams and has been used for patient dose measurements during radiotherapy procedures. However, the characteristics of this detector in kilovoltage photon beams and low dose ranges have not been studied. The purpose of this study was to characterize the MOSkin detector to determine its suitability for in vivo entrance skin dose measurements during interventional radiology procedures. The calibration and reproducibility of the MOSkin detector and its dependency on different radiation beam qualities were carried out using RQR standard radiation qualities in free-in-air geometry. Studies of the other characterization parameters, such as the dose linearity and dependency on exposure angle, field size, frame rate, depth-dose, and source-to-surface distance (SSD), were carried out using a solid water phantom under a clinical x-ray unit. The MOSkin detector showed good reproducibility (94%) and dose linearity (99%) for the dose range of 2 to 213 cGy. The sensitivity did not significantly change with the variation of SSD (± 1%), field size (± 1%), frame rate (± 3%), or beam energy (± 5%). The detector angular dependence was within ± 5% over 360° and the dose recorded by the MOSkin detector in different depths of a solid water phantom was in good agreement with the Markus parallel plate ionization chamber to within ± 3%. The MOSkin detector proved to be reliable when exposed to different field sizes, SSDs, depths in solid water, dose rates, frame rates, and radiation incident angles within a clinical x-ray beam. The MOSkin detector with water equivalent depth equal to 0.07 mm is a suitable detector for in vivo skin dosimetry during interventional radiology procedures.

Angular dependence of the response of the nanoDot OSLD system for measurements at depth in clinical megavoltage beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehmann, Joerg, E-mail: Joerg.Lehmann@sydney.edu.au; Institute of Medical Physics, University of Sydney, Physics Road A28, Sydney, NSW 2006; School of Applied Sciences, Royal Melbourne Institute of Technology

Purpose: The purpose of this investigation was to assess the angular dependence of a commercial optically stimulated luminescence dosimeter (OSLD) dosimetry system in MV x-ray beams at depths beyondd{sub max} and to find ways to mitigate this dependence for measurements in phantoms. Methods: Two special holders were designed which allow a dosimeter to be rotated around the center of its sensitive volume. The dosimeter's sensitive volume is a disk, 5 mm in diameter and 0.2 mm thick. The first holder rotates the disk in the traditional way. It positions the disk perpendicular to the beam (gantry pointing to the floor)more » in the initial position (0°). When the holder is rotated the angle of the disk towards the beam increases until the disk is parallel with the beam (“edge on,” 90°). This is referred to as Setup 1. The second holder offers a new, alternative measurement position. It positions the disk parallel to the beam for all angles while rotating around its center (Setup 2). Measurements with five to ten dosimeters per point were carried out for 6 MV at 3 and 10 cm depth. Monte Carlo simulations using GEANT4 were performed to simulate the response of the active detector material for several angles. Detector and housing were simulated in detail based on microCT data and communications with the manufacturer. Various material compositions and an all-water geometry were considered. Results: For the traditional Setup 1 the response of the OSLD dropped on average by 1.4% ± 0.7% (measurement) and 2.1% ± 0.3% (Monte Carlo simulation) for the 90° orientation compared to 0°. Monte Carlo simulations also showed a strong dependence of the effect on the composition of the sensitive layer. Assuming the layer to completely consist of the active material (Al{sub 2}O{sub 3}) results in a 7% drop in response for 90° compared to 0°. Assuming the layer to be completely water, results in a flat response within the simulation uncertainty of about 1%. For the new Setup 2, measurements and Monte Carlo simulations found the angular dependence of the dosimeter to be below 1% and within the measurement uncertainty. Conclusions: The dosimeter system exhibits a small angular dependence of approximately 2% which needs to be considered for measurements involving other than normal incident beams angles. This applies in particular to clinicalin vivo measurements where the orientation of the dosimeter is dictated by clinical circumstances and cannot be optimized as otherwise suggested here. When measuring in a phantom, the proposed new setup should be considered. It changes the orientation of the dosimeter so that a coplanar beam arrangement always hits the disk shaped detector material from the thin side and thereby reduces the angular dependence of the response to within the measurement uncertainty of about 1%. This improvement makes the dosimeter more attractive for clinical measurements with multiple coplanar beams in phantoms, as the overall measurement uncertainty is reduced. Similarly, phantom based postal audits can transition from the traditional TLD to the more accurate and convenient OSLD.« less

Multi-step contrast sensitivity gauge

DOEpatents

Quintana, Enrico C; Thompson, Kyle R; Moore, David G; Heister, Jack D; Poland, Richard W; Ellegood, John P; Hodges, George K; Prindville, James E

2014-10-14

An X-ray contrast sensitivity gauge is described herein. The contrast sensitivity gauge comprises a plurality of steps of varying thicknesses. Each step in the gauge includes a plurality of recesses of differing depths, wherein the depths are a function of the thickness of their respective step. An X-ray image of the gauge is analyzed to determine a contrast-to-noise ratio of a detector employed to generate the image.

Sensitivity of nocturnal boundary layer temperature to tropospheric aerosol surface radiative forcing under clear-sky conditions

NASA Astrophysics Data System (ADS)

Nair, Udaysankar S.; McNider, Richard; Patadia, Falguni; Christopher, Sundar A.; Fuller, Kirk

2011-01-01

Since the middle of the last century, global surface air temperature exhibits an increasing trend, with nocturnal temperatures increasing at a much higher rate. Proposed causative mechanisms include the radiative impact of atmospheric aerosols on the nocturnal boundary layer (NBL) where the temperature response is amplified due to shallow depth and its sensitivity to potential destabilization. A 1-D version of the Regional Atmospheric Modeling System is used to examine the sensitivity of the nocturnal boundary layer temperature to the surface longwave radiative forcing (SLWRF) from urban aerosol loading and doubled atmospheric carbon dioxide concentrations. The analysis is conducted for typical midlatitude nocturnal boundary layer case days from the CASES-99 field experiment and is further extended to urban sites in Pune and New Delhi, India. For the cases studied, locally, the nocturnal SLWRF from urban atmospheric aerosols (2.7-47 W m-2) is comparable or exceeds that caused by doubled atmospheric carbon dioxide (3 W m-2), with the surface temperature response ranging from a compensation for daytime cooling to an increase in the nocturnal minimum temperature. The sensitivity of the NBL to radiative forcing is approximately 4 times higher compared to the daytime boundary layer. Nighttime warming or cooling may occur depending on the nature of diurnal variations in aerosol optical depth. Soil moisture also modulates the magnitude of SLWRF, decreasing from 3 to 1 W m-2 when soil saturation increases from 37% to 70%. These results show the importance of aerosols on the radiative balance of the climate system.

STRATIFIED COMPOSITION EFFECTS ON PLANETARY NEUTRON FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

O. GASNAULT; ET AL

2001-01-01

All the bodies of the solar system that are directly irradiated by the galactic cosmic rays, emit enough neutrons to allow a measurement from space. These leakage neutron fluxes are indexes of the surface composition, depending on the energy of the neutrons [1]. Recent work propose geochemical interpretations of these fluxes: the thermal energy range is sensitive to iron, titanium, rare earth elements and thorium [2, 3], the epithermal energy range is sensitive to hydrogen, samarium and gadolinium [2] and the fast energy range is representative of the average soil atomic mass [4]. Nevertheless these studies make the hypothesis ofmore » a composition uniform within the footprint of the spectrometer and independent of depth. We show in this abstract that a stratified composition could change significantly the flux intensity and complicate the interpretation of the measurements. The neutron leakage flux is a competition between production effects (sensitive at high energy) and diffusion-capture effects (mostly sensitive at low energy). On one hand, it happens to be that the elements which produce the higher number of neutrons in typical lunar compositions are iron and titanium, which have also large cross section of absorption with the neutrons. On the other hand, the maximum of neutron intensity does not occur at the surface but at about 180 g cm{sup {minus}2} in depth. Therefore, if we have an iron- and/or titanium-rich soil (important production of neutrons) with a top layer having less iron and/or titanium (i.e. more transparent to the neutrons), we can expect an enhancement of the flux compared to a uniform composition.« less

Quantifying the importance of spatial resolution and other factors through global sensitivity analysis of a flood inundation model

NASA Astrophysics Data System (ADS)

Thomas Steven Savage, James; Pianosi, Francesca; Bates, Paul; Freer, Jim; Wagener, Thorsten

2016-11-01

Where high-resolution topographic data are available, modelers are faced with the decision of whether it is better to spend computational resource on resolving topography at finer resolutions or on running more simulations to account for various uncertain input factors (e.g., model parameters). In this paper we apply global sensitivity analysis to explore how influential the choice of spatial resolution is when compared to uncertainties in the Manning's friction coefficient parameters, the inflow hydrograph, and those stemming from the coarsening of topographic data used to produce Digital Elevation Models (DEMs). We apply the hydraulic model LISFLOOD-FP to produce several temporally and spatially variable model outputs that represent different aspects of flood inundation processes, including flood extent, water depth, and time of inundation. We find that the most influential input factor for flood extent predictions changes during the flood event, starting with the inflow hydrograph during the rising limb before switching to the channel friction parameter during peak flood inundation, and finally to the floodplain friction parameter during the drying phase of the flood event. Spatial resolution and uncertainty introduced by resampling topographic data to coarser resolutions are much more important for water depth predictions, which are also sensitive to different input factors spatially and temporally. Our findings indicate that the sensitivity of LISFLOOD-FP predictions is more complex than previously thought. Consequently, the input factors that modelers should prioritize will differ depending on the model output assessed, and the location and time of when and where this output is most relevant.

Modelling high Arctic deep permafrost temperature sensitivity in Northeast Greenland based on experimental and field observations

NASA Astrophysics Data System (ADS)

Rasmussen, Laura Helene; Zhang, Wenxin; Hollesen, Jørgen; Cable, Stefanie; Hvidtfeldt Christiansen, Hanne; Jansson, Per-Erik; Elberling, Bo

2017-04-01

Permafrost affected areas in Greenland are expected to experience a marked temperature increase within decades. Most studies have considered near-surface permafrost sensitivity, whereas permafrost temperatures below the depths of zero annual amplitude is less studied despite being closely related to changes in near-surface conditions, such as changes in active layer thermal properties, soil moisture and snow depth. In this study, we measured the sensitivity of thermal conductivity (TC) to gravimetric water content (GWC) in frozen and thawed permafrost sediments from fine-sandy and gravelly deltaic and fine-sandy alluvial deposits in the Zackenberg valley, NE Greenland. We further calibrated a coupled heat and water transfer model, the "CoupModel", for one central delta sediment site with average snow depth and further forced it with meteorology from a nearby delta sediment site with a topographic snow accumulation. With the calibrated model, we simulated deep permafrost thermal dynamics in four 20-year scenarios with changes in surface temperature and active layer (AL) soil moisture: a) 3 °C warming and AL water table at 0.5 m depth; b) 3 °C warming and AL water table at 0.1 m depth; c) 6 °C warming and AL water table at 0.5 m depth and d) 6 °C warming and AL water table at 0.1 m depth. Our results indicate that frozen sediments have higher TC than thawed sediments. All sediments show a positive linear relation between TC and soil moisture when frozen, and a logarithmic one when thawed. Gravelly delta sediments were highly sensitive, but never reached above 12 % GWC, indicating a field effect of water retention capacity. Alluvial sediments are less sensitive to soil moisture than deltaic (fine and coarse) sediments, indicating the importance of unfrozen water in frozen sediment. The deltaic site with snow accumulation had 1 °C higher mean annual ground temperature than the average snow depth site. Permafrost temperature at the depth of 18 m increased with 1.5 °C and 3.5 °C in the scenarios with 3 °C and 6 °C warming, respectively. Increasing the soil moisture had no important additional effect to warming, although an increase in thermal offset was indicated. We conclude that below-ground sediment properties affect the sensitivity of TC to GWC, that surface temperature changes can influence the deep permafrost within a short time scale, and that differences in snow depth affect surface temperatures. Sediment type and the type of precipitation should thus be considered when estimating future High Arctic deep permafrost sensitivity.

Rooting for food security in Sub-Saharan Africa

NASA Astrophysics Data System (ADS)

Guilpart, Nicolas; Grassini, Patricio; van Wart, Justin; Yang, Haishun; van Ittersum, Martin K.; van Bussel, Lenny G. J.; Wolf, Joost; Claessens, Lieven; Leenaars, Johan G. B.; Cassman, Kenneth G.

2017-11-01

There is a persistent narrative about the potential of Sub-Saharan Africa (SSA) to be a ‘grain breadbasket’ because of large gaps between current low yields and yield potential with good management, and vast land resources with adequate rainfall. However, rigorous evaluation of the extent to which soils can support high, stable yields has been limited by lack of data on rootable soil depth of sufficient quality and spatial resolution. Here we use location-specific climate data, a robust spatial upscaling approach, and crop simulation to assess sensitivity of rainfed maize yields to root-zone water holding capacity. We find that SSA could produce a modest maize surplus but only if rootable soil depths are comparable to that of other major breadbaskets, such as the US Corn Belt and South American Pampas, which is unlikely based on currently available information. Otherwise, producing surplus grain for export will depend on expansion of crop area with the challenge of directing this expansion to regions where soil depth and rainfall are supportive of high and consistent yields, and where negative impacts on biodiversity are minimal.

Intraoperative spatial frequency domain diffuse optical tomography with indo-cyanine green (ICG) fluorescence contrast (Conference Presentation)

NASA Astrophysics Data System (ADS)

Chong, Sang Hoon; Parthasarathy, Ashwin B.; Kavuri, Venkaiah C.; Moscatelli, Frank A.; Singhal, Sunil; Yodh, Arjun G.

2017-02-01

Surgical resection is the most effective treatment strategy for solid tumors, but complete removal of the tumor is critical for post-surgical recovery/long-term survival and is dependent on correct identification of the tumor margin and accurate excision of microscopic residual tumor in the surgical field. Fluorescence image guided surgery is an emerging technique that has shown promise for intraoperative location of tumors and tumor margins. Current versions of such intraoperative fluorescence imaging, however, are generally limited to 2D near-surface images, i.e., without information about tumor depth. Here we present an intraoperative fluorescence imaging system for 3D volumetric imaging of tumors; the system uses spatial frequency domain diffuse optical tomography with an analytic inversion reconstruction method. The new instrument can derive depth-sensitive 3D tumor images at depths up to 1 cm, and it employs compact epi-imaging and illumination suitable for the operating room, with quasi-real-time image reconstruction for surgical visualization. We present experimental results with FDA-approved Indocynanine Green using an extensive array of tissue phantoms and in a pilot in-vivo study.

On the wall perturbation correction for a parallel-plate NACP-02 chamber in clinical electron beams.

PubMed

Zink, K; Wulff, J

2011-02-01

In recent years, several Monte Carlo studies have been published concerning the perturbation corrections of a parallel-plate chamber in clinical electron beams. In these studies, a strong depth dependence of the relevant correction factors (p(wall) and P(cav)) for depth beyond the reference depth is recognized and it has been shown that the variation with depth is sensitive to the choice of the chamber's effective point of measurement. Recommendations concerning the positioning of parallel-plate ionization chambers in clinical electron beams are not the same for all current dosimetry protocols. The IAEA TRS-398 as well as the IPEM protocol and the German protocol DIN 6800-2 interpret the depth of measurement within the phantom as the water equivalent depth, i.e., the nonwater equivalence of the entrance window has to be accounted for by shifting the chamber by an amount deltaz. This positioning should ensure that the primary electrons traveling from the surface of the water phantom through the entrance window to the chamber's reference point sustain the same energy loss as the primary electrons in the undisturbed phantom. The objective of the present study is the determination of the shift deltaz for a NACP-02 chamber and the calculation of the resulting wall perturbation correction as a function of depth. Moreover, the contributions of the different chamber walls to the wall perturbation correction are identified. The dose and fluence within the NACP-02 chamber and a wall-less air cavity is calculated using the Monte Carlo code EGSnrc in a water phantom at different depths for different clinical electron beams. In order to determine the necessary shift to account for the nonwater equivalence of the entrance window, the chamber is shifted in steps deltaz around the depth of measurement. The optimal shift deltaz is determined from a comparison of the spectral fluence within the chamber and the bare cavity. The wall perturbation correction is calculated as the ratio between doses for the complete chamber and a wall-less air cavity. The high energy part of the fluence spectra within the chamber strongly varies even with small chamber shifts, allowing the determination of deltaz within micrometers. For the NACP-02 chamber a shift deltaz = -0.058 cm results. This value is independent of the energy of the primary electrons as well as of the depth within the phantom and it is in good agreement with the value recommended in the German dosimetry protocol. Applying this shift, the calculated wall perturbation correction as a function of depth is varying less than 1% from zero up to the half value depth R50 for electron energies in the range of 6-21 MeV. The remaining depth dependence can mainly be attributed to the scatter properties of the entrance window. When neglecting the nonwater equivalence of the entrance window, the variation of p(wall) with depth is up to 10% and more, especially for low electron energies. The variation of the wall perturbation correction for the NACP-02 chamber in clinical electron beams strongly depends on the positioning of the chamber. Applying a shift deltaz = -0.058 cm toward the focus ensures that the primary electron spectrum within the chamber bears the largest resemblance to the fluence of a wall-less cavity. Hence, the influence of the chamber walls on the perturbation correction can be separated out and the residual variation of p(wall) with depth is minimized.

Depth to the bottom of magnetic sources (DBMS) from aeromagnetic data of Central India using modified centroid method for fractal distribution of sources

NASA Astrophysics Data System (ADS)

Bansal, A. R.; Anand, S.; Rajaram, M.; Rao, V.; Dimri, V. P.

2012-12-01

The depth to the bottom of the magnetic sources (DBMS) may be used as an estimate of the Curie - point depth. The DBMSs can also be interpreted in term of thermal structure of the crust. The thermal structure of the crust is a sensitive parameter and depends on the many properties of crust e.g. modes of deformation, depths of brittle and ductile deformation zones, regional heat flow variations, seismicity, subsidence/uplift patterns and maturity of organic matter in sedimentary basins. The conventional centroid method of DBMS estimation assumes random uniform uncorrelated distribution of sources and to overcome this limitation a modified centroid method based on fractal distribution has been proposed. We applied this modified centroid method to the aeromagnetic data of the central Indian region and selected 29 half overlapping blocks of dimension 200 km x 200 km covering different parts of the central India. Shallower values of the DBMS are found for the western and southern portion of Indian shield. The DBMSs values are found as low as close to middle crust in the south west Deccan trap and probably deeper than Moho in the Chhatisgarh basin. In few places DBMS are close to the Moho depth found from the seismic study and others places shallower than the Moho. The DBMS indicate complex nature of the Indian crust.

Properties of a commercial PTW-60019 synthetic diamond detector for the dosimetry of small radiotherapy beams.

PubMed

Lárraga-Gutiérrez, José Manuel; Ballesteros-Zebadúa, Paola; Rodríguez-Ponce, Miguel; García-Garduño, Olivia Amanda; de la Cruz, Olga Olinca Galván

2015-01-21

A CVD based radiation detector has recently become commercially available from the manufacturer PTW-Freiburg (Germany). This detector has a sensitive volume of 0.004 mm(3), a nominal sensitivity of 1 nC Gy(-1) and operates at 0 V. Unlike natural diamond based detectors, the CVD diamond detector reports a low dose rate dependence. The dosimetric properties investigated in this work were dose rate, angular dependence and detector sensitivity and linearity. Also, percentage depth dose, off-axis dose profiles and total scatter ratios were measured and compared against equivalent measurements performed with a stereotactic diode. A Monte Carlo simulation was carried out to estimate the CVD small beam correction factors for a 6 MV photon beam. The small beam correction factors were compared with those obtained from stereotactic diode and ionization chambers in the same irradiation conditions The experimental measurements were performed in 6 and 15 MV photon beams with the following square field sizes: 10 × 10, 5 × 5, 4 × 4, 3 × 3, 2 × 2, 1.5 × 1.5, 1 × 1 and 0.5 × 0.5 cm. The CVD detector showed an excellent signal stability (<0.2%) and linearity, negligible dose rate dependence (<0.2%) and lower response angular dependence. The percentage depth dose and off-axis dose profiles measurements were comparable (within 1%) to the measurements performed with ionization chamber and diode in both conventional and small radiotherapy beams. For the 0.5 × 0.5 cm, the measurements performed with the CVD detector showed a partial volume effect for all the dosimetric quantities measured. The Monte Carlo simulation showed that the small beam correction factors were close to unity (within 1.0%) for field sizes ≥1 cm. The synthetic diamond detector had high linearity, low angular and negligible dose rate dependence, and its response was energy independent within 1% for field sizes from 1.0 to 5.0 cm. This work provides new data showing the performance of the CVD detector compared against a high spatial resolution diode. It also presents a comparison of the CVD small beam correction factors with those of diode and ionization chamber for a 6 MV photon beam.

SU-E-T-665: Radiochromic Film Quenching Effect Reduction for Proton Beam Dosimetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aldelaijan, S; Alzorkany, F; Moftah, B

2015-06-15

Purpose: Depending on the useful dose range in which radiochromic films operate, number of different radiochromic film models have been designed. The impact of different film models on quenching effect for percent depth dose (PDD) measurements in proton beams has been investigated. Methods: Calibrated PTW Markus ionization chamber was used to measure PDD and beam output for 26.5 MeV protons produced by CS30 cyclotron. An aluminum cylinder was added in front of the beam exit serving as a radiation shutter. The measured signal was normalized to a monitor chamber reading and subsequently scaled by ratio of water-to-air stopping powers atmore » given depth, while the effective depth of measurements was scaled by ratios of material-to-water physical densities and CSDA ranges. Output was measured in water at 2.1 mm reference-depth in the plateau upstream from the Bragg peak. Following the TRS-398 reference dosimetry protocol for proton beams, the output was calibrated in water. Three radiochromic film models (EBT, EBT3 and HD-V2) were calibrated within Lexan phantom positioned at the same water-equivalent depth. Thicknesses of films sensitive layers were 34 µm, 30 µm and 8 µm, respectively. Small film pieces (1 x 2 cm{sup 2}) were positioned within polyethylene phantom along the beam central axis with an angulation of 5° for PDD measurements. Results: While the output of the proton beam was found to be around 7 Gy/sec, the actual value of the output per monitor chamber reading (2.32 Gy/nC) was used for reference-dose irradiations during film calibration. Dose ratios at the Bragg peak relative to the reference-depth were 3.88, 2.52, 2.19, and 2.02 for the Markus chamber, HD-V2, EBT3, and EBT film models, respectively. Conclusion: Results at hand suggest that quenching effect is reduced when a radiochromic film model with smaller sensitive layer thickness is used for PDD measurements in proton beams. David Lewis is the owner of RCF Consulting, LLC.« less

Spatial and temporal dynamics of deep percolation, lag time and recharge in an irrigated semi-arid region

NASA Astrophysics Data System (ADS)

Nazarieh, F.; Ansari, H.; Ziaei, A. N.; Izady, A.; Davari, K.; Brunner, P.

2018-05-01

The time required for deep percolating water to reach the water table can be considerable in areas with a thick vadose zone. Sustainable groundwater management, therefore, has to consider the spatial and temporal dynamics of groundwater recharge. The key parameters that control the lag time have been widely examined in soil physics using small-scale lysimeters and modeling studies. However, only a small number of studies have analyzed how deep-percolation rates affect groundwater recharge dynamics over large spatial scales. This study examined how the parameters influencing lag time affect groundwater recharge in a semi-arid catchment under irrigation (in northeastern Iran) using a numerical modeling approach. Flow simulations were performed by the MODFLOW-NWT code with the Vadose-Zone Flow (UZF) Package. Calibration of the groundwater model was based on data from 48 observation wells. Flow simulations showed that lag times vary from 1 to more than 100 months. A sensitivity analysis demonstrated that during drought conditions, the lag time was highly sensitive to the rate of deep percolation. The study illustrated two critical points: (1) the importance of providing estimates of the lag time as a basis for sustainable groundwater management, and (2) lag time not only depends on factors such as soil hydraulic conductivity or vadose zone depth but also depends on the deep-percolation rates and the antecedent soil-moisture condition. Therefore, estimates of the lag time have to be associated with specific percolation rates, in addition to depth to groundwater and soil properties.

A Statistics-Based Material Property Analysis to Support TPS Characterization

NASA Technical Reports Server (NTRS)

Copeland, Sean R.; Cozmuta, Ioana; Alonso, Juan J.

2012-01-01

Accurate characterization of entry capsule heat shield material properties is a critical component in modeling and simulating Thermal Protection System (TPS) response in a prescribed aerothermal environment. The thermal decomposition of the TPS material during the pyrolysis and charring processes is poorly characterized and typically results in large uncertainties in material properties as inputs for ablation models. These material property uncertainties contribute to large design margins on flight systems and cloud re- construction efforts for data collected during flight and ground testing, making revision to existing models for entry systems more challenging. The analysis presented in this work quantifies how material property uncertainties propagate through an ablation model and guides an experimental test regimen aimed at reducing these uncertainties and characterizing the dependencies between properties in the virgin and charred states for a Phenolic Impregnated Carbon Ablator (PICA) based TPS. A sensitivity analysis identifies how the high-fidelity model behaves in the expected flight environment, while a Monte Carlo based uncertainty propagation strategy is used to quantify the expected spread in the in-depth temperature response of the TPS. An examination of how perturbations to the input probability density functions affect output temperature statistics is accomplished using a Kriging response surface of the high-fidelity model. Simulations are based on capsule configuration and aerothermal environments expected during the Mars Science Laboratory (MSL) entry sequence. We identify and rank primary sources of uncertainty from material properties in a flight-relevant environment, show the dependence on spatial orientation and in-depth location on those uncertainty contributors, and quantify how sensitive the expected results are.

Multimode nonlinear optical imaging of the dermis in ex vivo human skin based on the combination of multichannel mode and Lambda mode.

PubMed

Zhuo, Shuangmu; Chen, Jianxin; Luo, Tianshu; Zou, Dingsong

2006-08-21

A Multimode nonlinear optical imaging technique based on the combination of multichannel mode and Lambda mode is developed to investigate human dermis. Our findings show that this technique not only improves the image contrast of the structural proteins of extracellular matrix (ECM) but also provides an image-guided spectral analysis method to identify both cellular and ECM intrinsic components including collagen, elastin, NAD(P)H and flavin. By the combined use of multichannel mode and Lambda mode in tandem, the obtained in-depth two photon-excited fluorescence (TPEF) and second-harmonic generation (SHG) imaging and TPEF/SHG signals depth-dependence decay can offer a sensitive tool for obtaining quantitative tissue structural and biochemical information. These results suggest that the technique has the potential to provide more accurate information for determining tissue physiological and pathological states.

The jumbo squid, Dosidicus gigas (Ommastrephidae), living in oxygen minimum zones II: Blood-oxygen binding

NASA Astrophysics Data System (ADS)

Seibel, Brad A.

2013-10-01

Dosidicus gigas is a large, metabolically active squid that migrates across a strong oxygen and temperature gradient in the Eastern Pacific. Here we analyze the oxygen-binding properties of the squid's respiratory protein (hemocyanin, Hc) that facilitate such activity. A high Hc-oxygen affinity, strong temperature dependence, and pronounced pH sensitivity (P50=0.009T2.03, pH 7.4; Bohr coefficient=ΔlogP50/ΔpH=-1.55+0.034T) of oxygen binding facilitate night-time foraging in the upper water column, and support suppressed oxygen demand in hypoxic waters at greater depths. Expanding hypoxia may act to alter the species habitable depth range. This analysis supports the contention that ocean acidification could limit oxygen carrying capacity in squids at warmer temperature leading to reduced activity levels or altered distribution.

Characterization of metal oxide field-effect transistors for first helical tomotherapy Hi-Art II unit in India.

PubMed

Kinhikar, Rajesh A; Pai, Rajeshree; Master, Zubin; Deshpande, Deepak D

2009-01-01

To characterize metal oxide semiconductor field-effect transistors (MOSFETs) for a 6-MV photon beam with a first helical tomotherapy Hi-Art II unit in India. Standard sensitivity MOSFETs were first calibrated and then characterized for reproducibility, field size dependence, angular dependence, fade effects, and temperature dependence. The detector sensitivity was estimated for static as well as rotational modes for three jaw settings (1.0 cm x 40 cm, 2.5 cm x 40 cm, and 5 cm x 40 cm) at 1.5-cm depth with a source-to-axis distance (SAD) of 85 cm in virtual water slabs. The A1SL ion chamber and thermoluminescence dosimeters (TLDs) were used to compare the results. No significant difference was found in the detector sensitivity for static and rotational procedures. The average detector sensitivity for static procedures was 1.10 mV/cGy (SD 0.02) while it was 1.12 mV/cGy (SD 0.02) for rotational procedures. The average detector sensitivity found was the same within the experimental uncertainty for static and rotational dose deliveries. The MOSFET reading was consistent and its reproducibility was excellent (+0.5%) while there was no significant dependence of field size. The angular dependence of less than 1.0% was observed. There was negligible fading effect of the MOSFET. The MOSFET response was found independent of temperature in the range 18 degrees-30 degrees. The ion chamber readings were assumed to be a reference for the estimation of the MOSFET calibration factor. The ion chamber and the TLD were in good agreement (+2%) with each other. This study deals only with the measurements and calibration performed on the surface of the phantom. MOSFET was calibrated and validated for phantom surface measurements for a 6-MV photon beam generated by a tomotherapy machine. The sensitivity of the detector was the same for both modes of treatment delivery with tomotherapy. The performance of the MOSFET was validated for and satisfactory for the helical tomotherapy Hi-Art II unit. However, MOSFET may be used for in vivo surface dosimetry only after it is calibrated under the conditions replicating as much as possible the manner in which the dosimeter will be used clinically.

Burn depth determination using high-speed polarization-sensitive Mueller optical coherence tomography with continuous polarization modulation

NASA Astrophysics Data System (ADS)

Todorović, Miloš; Ai, Jun; Pereda Cubian, David; Stoica, George; Wang, Lihong

2006-02-01

National Health Interview Survey (NHIS) estimates more than 1.1 million burn injuries per year in the United States, with nearly 15,000 fatalities from wounds and related complications. An imaging modality capable of evaluating burn depths non-invasively is the polarization-sensitive optical coherence tomography. We report on the use of a high-speed, fiber-based Mueller-matrix OCT system with continuous source-polarization modulation for burn depth evaluation. The new system is capable of imaging at near video-quality frame rates (8 frames per second) with resolution of 10 μm in biological tissue (index of refraction: 1.4) and sensitivity of 78 dB. The sample arm optics is integrated in a hand-held probe simplifying the in vivo experiments. The applicability of the system for burn depth determination is demonstrated using biological samples of porcine tendon and porcine skin. The results show an improved imaging depth (1 mm in tendon) and a clear localization of the thermally damaged region. The burnt area determined from OCT images compares well with the histology, thus proving the system's potential for burn depth determination.

Macrobenthic physiological responses to environmental fluctuations: the reproductive cycle and enzymatic polymorphism of a eurybathic sea-urchin on the northwestern Mediterranean continental shelf and slope

NASA Astrophysics Data System (ADS)

Féral, Jean-Pierre; Ferrand, Jean-Guy; Guille, Alain

1990-09-01

Two hundred and twenty-seven sea-urchins, Brissopsis lyrifera, were collected in the Gulf of Lions between 60 and ca 1000 m depth, over a21/2 year period. The reproductive cycle was found to be independent of depth. Males and females were sexually mature at the end of summer. After a period of gonadal rest during winter, gametogenesis resumed at the beginning of spring. Specific enzymatic reactions on gut extracts, after PAA-electrophoresis, indicated that B. lyrifera is not a very polymorphic species and is generally homozygotic at the tested loci, except for esterases. Individual regrouping (discriminant factorial analysis) did not appear to be sensitive to the depth factor. On the contrary, a relationship between zymogrammes of the digestive tube and the sampling season was enhanced when sex and maturation stage were considered (main concerned activities: alkaline phosphatase ALK 1 and α-amylase AMY 1 and AMY 2), especially for females. These results indicate that enzymatic activities may be seasonal. They also indicate metabolic differences dependent upon the sex in somatic tissues, on one hand, and depending on environmental fluctuations on the other. Biological cycles are seasonal in the Mediterranean Sea, to 1000 m. In the case of B. lyrifera, a relationship could be established between flux increases of sediment carbon and sterols in winter and the beginning of gametogenesis. It is concluded that physiological signals, studied at different depths, would permit us to appreciate biological components of the margin ecosystem dynamics. This will also help define the place of life in the general oceanic fluxes (matter and energy).

Rules of Thumb for Depth of Investigation, Pseudo-Position and Resolution of the Electrical Resistivity Method from Analysis of the Moments of the Sensitivity Function for a Homogeneous Half-Space

NASA Astrophysics Data System (ADS)

Butler, S. L.

2017-12-01

The electrical resistivity method is now highly developed with 2D and even 3D surveys routinely performed and with available fast inversion software. However, rules of thumb, based on simple mathematical formulas, for important quantities like depth of investigation, horizontal position and resolution have not previously been available and would be useful for survey planning, preliminary interpretation and general education about the method. In this contribution, I will show that the sensitivity function for the resistivity method for a homogeneous half-space can be analyzed in terms of its first and second moments which yield simple mathematical formulas. The first moment gives the sensitivity-weighted center of an apparent resistivity measurement with the vertical center being an estimate of the depth of investigation. I will show that this depth of investigation estimate works at least as well as previous estimates based on the peak and median of the depth sensitivity function which must be calculated numerically for a general four electrode array. The vertical and horizontal first moments can also be used as pseudopositions when plotting 1, 2 and 3D pseudosections. The appropriate horizontal plotting point for a pseudosection was not previously obvious for nonsymmetric arrays. The second moments of the sensitivity function give estimates of the spatial extent of the region contributing to an apparent resistivity measurement and hence are measures of the resolution. These also have simple mathematical formulas.

?-BiPd: a clean noncentrosymmetric superconductor

NASA Astrophysics Data System (ADS)

Ramakrishnan, Srinivasan; Joshi, Bhanu; Thamizhavel, A.

2017-12-01

We present a comprehensive review of the normal and superconducting state properties of a high-quality single crystal of monoclinic BiPd (?-BiPd, space group ?). The superconductivity of this crystal below 3.8 K is established by measuring its properties using bulk as well as spectroscopic techniques. BiPd is one of the cleanest noncentrosymmetric superconductors that display superconductivity with multiple energy gaps. Evidence of multiple energy gaps was found in heat capacity, point contact (PC) spectroscopy, penetration depth, muon spin rotation, small angle neutron scattering and NMR/NQR measurements. Moreover, Muon spin rotation measurements also suggest strong field dependence of the penetration depth of this superconductor. Unusual superconducting properties due to possible s and p wave mixing are shown by the observation of Andreev bound state in PC measurements as well as the suppressed coherence peak in the temperature dependence of the spin-lattice relaxation in the NQR measurements. This surmise is at variance with the recent STM measurements (different crystal). The observed unusual properties and multiband superconductivity are extremely sensitive to disorder in BiPd. Finally, there is a possibility of tuning the electron correlations by selective substitution in BiPd, thus making it an important system for further investigations.

In vivo study of glucose-induced changes in skin properties assessed with optical coherence tomography

NASA Astrophysics Data System (ADS)

Kuranov, Roman V.; Sapozhnikova, Veronika V.; Prough, Donald S.; Cicenaite, Inga; Esenaliev, Rinat O.

2006-08-01

Recently, our in vivo studies demonstrated a strong correlation between blood glucose concentration and the slope of the optical coherence tomography (OCT) signal when the probing beam was scanned over a straight line. To improve the sensitivity of OCT for blood glucose monitoring, two-dimensional (2D) lateral scanning of the OCT probing beam was proposed. Depth-dependent changes in pig skin properties with variation of blood glucose concentration were revealed due to significant suppression of speckle noise and motion artefacts in 2D scanning mode. The correlation coefficient of the OCT signal slope with blood glucose concentration varied periodically in the range from -0.9 to +0.9 depending on depth. The period of variation of the correlation coefficient was 100-150 µm that corresponded to the distance between neighbour collagen bundles. We also observed a decrease of skin thickness by 10 ± 7.5 µm with an increase of blood glucose concentration by 277 ± 56 mg dl-1. Mechanisms of glucose-induced changes in skin properties owing to tissue layer shift caused by dehydration associated with the glucose osmotic effect were considered.

Recovering obliterated engraved marks on aluminium surfaces by etching technique.

PubMed

Baharum, Mohd Izhar Mohd; Kuppuswamy, R; Rahman, Azari Abd

2008-05-20

A study has been made of the characteristics of restoration of obliterated engraved marks on aluminium surfaces by etching technique. By etching different reagents on 0.61mm thick sheets of aluminium (99wt%) on which some engraved marks had been erased to different depths it was found that the reagent 60% hydrochloric acid and 40% sodium hydroxide on alternate swabbing on the surfaces was found to be the most sensitive one for these metal surfaces. This reagent was able to restore marks in the above plates erased down to 0.04mm below the bottom of the engraving. The marks also presented excellent contrast with the background. This reagent was further experimented with similar aluminium surfaces, but of relatively greater thickness of 1.5mm. It was noticed that the recovery depth increased slightly to 0.06mm; this suggested the dependence of recovery depth on the thickness of the sheet metal. Further, the depth of restoration decreased in cases where the original number was erased and over which a new number was engraved; the latter results are similar to those of steel surfaces reported earlier [M.A.M. Zaili, R. Kuppuswamy, H. Harun, Restoration of engraved marks on steel surfaces by etching technique, Forensic Sci. Int. 171 (2007) 27-32].

Turbid water measurements of remote sensing penetration depth at visible and near-infrared wavelength

NASA Technical Reports Server (NTRS)

Morris, W. D.; Witte, W. G.; Whitlock, C. H.

1980-01-01

Remote sensing of water quality is dicussed. Remote sensing penetration depth is a function both of water type and wavelength. Results of three tests to help demonstrate the magnitude of this dependence are presented. The water depth to which the remote-sensor data was valid was always less than that of the Secchi disk depth, although not always the same fraction of that depth. The penetration depths were wavelength dependent and showed the greatest variation for the water type with largest Secchi depth. The presence of a reflective plate, simulating a reflective subsurface, increased the apparent depth of light penetration from that calculated for water of infinite depth.

Rheological model analysis on depth of toppling deformation in the anti-dip rock slope

NASA Astrophysics Data System (ADS)

Zheng, Da

2017-04-01

The failure of the toppling deformation occurred in the layered rock mass, it is a kind of mode of deformation and failure, which is bent towards free direction and gradually develops into the slope under the combined forces of in-situ stress, gravity, and groundwater dynamic (hydrostatic) pressure and so on. The most common toppling deformation is the toppling of ductile bending. Obtaining the developmental depth of bending deformation is of great significance for judging the development scale of the plasmodium and the stability of the slope. At present, the developmental depth of toppling deformation mainly depends on the survey and statistic of the exploration adit, or the simulation of the deformation and failure process through the numerical simulation method, there is little research on the developmental depth of toppling deformation from mechanics point of view. In this paper, with the consideration of the time-sensitive characteristics of developmental process of the toppling deformation, the anti-dip layered slope can be considered as a multi-layer superposition cantilever with fixed end and free end, bending under self-weight and inter-layer stress. Under the premise of the initial stage of rheology of the rock slopes, which is considered to be the limit position of the toppling deformation and development, the Kelvin rheological model, which is usually used to describe the decay creep, is chosen to describe the time-sensitive process of rock slopes. The stress-strain analysis calculation is used to obtain the time-varying expression of a certain point on the rock beam. Furthermore, taking the time to infinity, the depth of the layered rock slopes is calculated as x=4Ccosβ/[2γcosαcosβ - γ2(cos (α + β)+2sin(α + β)tanφ)*((1+n) /2+(1-n) cos2α/ 2)] , which is obtained by using the strain reaches zero as the criterion of the depth at toppling deformation development limit position, combining the time-varying expression of a certain point on the beam. we obtain the mathematic analysis conditions by using the constant positive characteristic of depth of the toppling deformation, The result shows that the depth of the slope toppling deformation is influenced by the rock mass, strata inclination, rock thickness, interfacial friction coefficient, interlayer internal friction angle, slope angel and Poisson 's ratio of rock slopes. The toppling deformation only occurs when 2cosαcosβ-[cos(α + β)+2sin(α + β)tanφ][(1+n)/2+(1-n) cos2α/2]≥0. This study is an exploration to explain the time-sensitive characteristics of toppling deformation by using rheological theory. The conclusion is of great significance for the study of the location of the bending zone, the size of the toppling deformation, the stability analysis and the early identification of the toppling deformation based on the deformation characteristics.

SU-E-T-354: Peak Temperature Ratio of TLD Glow Curves to Investigate the Spatial Dependence of LET in a Clinical Proton Beam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reft, C; Pankuch, M; Ramirez, H

Purpose: Use the ratio of the two high temperature peaks (HTR) in TLD 700 glow curves to investigate spatial dependence of the linear energy transfer (LET) in proton beams. Studies show that the relative biological effectiveness (RBE) depends upon the physical dose as well as its spatial distribution. Although proton therapy uses a spatially invariant RBE of 1.1, studies suggest that the RBE increases in the distal edge of a spread out Bragg peak (SOBP) due to the increased LET. Methods: Glow curve studies in TLD 700 show that the 280 C temperature peak is more sensitive to LET radiationmore » than the 210 C temperature peak. Therefore, the areas under the individual temperature peaks for TLDs irradiated in a proton beam normalized to the peak ratio for 6 MV photons are used to determine the HTR to obtain information on its LET. TLD 700 chips with dimensions 0.31×0.31×0.038 cc are irradiated with 90 MeV protons at varying depths in a specially designed blue wax phantom to investigate LET spatial dependence. Results: Five TLDs were placed at five different depths of the percent depth dose curve (PDD) of range 16.2 cm: center of the SOPB and approximately at the 99% distal edge, 90%, 75% and 25% of the PDD, respectively. HTR was 1.3 at the center of the SOBP and varied from 2.2 to 3.9 which can be related to an LET variation from 0.5 to 18 KeV/μ via calibration with radiation beams of varying LET. Conclusion: HTR data show a spatially invariant LET slightly greater than the 6 MV radiations in the SOBP, but a rapidly increasing LET at the end of the proton range. These results indicate a spatial variation in RBE with potential treatment consequences when selecting treatment margins to minimize the uncertainties in proton RBE.« less

Hydrographic charting from Landsat satellite - A comparison with aircraft imagery

NASA Technical Reports Server (NTRS)

Middleton, E. M.; Barker, J. L.

1976-01-01

The relative capabilities of two remote-sensing systems in measuring depth and, consequently, bottom contours in sandy-bottomed and sediment-laden coastal waters were determined quantitatively. The Multispectral Scanner (MSS), orbited on the Landsat-2 satellite, and the Ocean Color Scanner (OCS), flown on U-2 aircraft, were used for this evaluation. Analysis of imagery taken simultaneously indicates a potential for hydrographic charting of marine coastal and shallow shelf areas, even when water turbidity is a factor. Several of the eight optical channels examined on the OCS were found to be sensitive to depth or depth-related information. The greatest sensitivity was in OCS-4 (0.544 plus or minus 0.012 micron) from which contours corresponding to depths up to 12 m were determined. The sharpness of these contours and their spatial stability through time suggests that upwelling radiance is a measure of bottom reflectance and not of water turbidity. The two visible channels on Landsat's MSS were less sensitive in the discrimination of contours, with depths up to 8 m in the high-gain mode (3 X) determined in MSS-4 (0.5 to 0.6 micron).

Hydrographic charting from LANDSAT Satellite: A comparison with aircraft imagery

NASA Technical Reports Server (NTRS)

Middleton, E. M.; Barker, J. L.

1976-01-01

The relative capabilities of two remote-sensing systems in measuring depth and, consequently, bottom contours in sandy-bottomed and sediment-laden coastal waters were determined quantitatively. The multispectral scanner (MSS), orbited on the LANDSAT-2 Satellite, and the ocean color scanner (OCS), flown on U-2 aircraft, were used. Analysis of imagery taken simultaneously indicates a potential for hydrographic charting of marine coastal and shallow shelf areas, even when water turbidity is a factor. Several of the eight optical channels examined on the OCS were found to be sensitive to depth or depth-related information. The greatest sensitivity was in OCS-4(0.544 + or - 0.012 microns) from which contours corresponding to depths up to 12m were determined. The sharpness of these contours and their spatial stability through time suggests that upwelling radiance is a measure of bottom reflectance and not of water turbidity. The two visible channels on LANDSAT's MSS were less sensitive in the discrimination of contours, with depths up to 8m in the high-gain mode (3x) determined in MSS-4(0.5 to 0.6 microns).

Depth-Dependent Anisotropies of Amides and Sugar in Perpendicular and Parallel Sections of Articular Cartilage by Fourier Transform Infrared Imaging (FTIRI)

PubMed Central

Xia, Yang; Mittelstaedt, Daniel; Ramakrishnan, Nagarajan; Szarko, Matthew; Bidthanapally, Aruna

2010-01-01

Full thickness blocks of canine humeral cartilage were microtomed into both perpendicular sections and a series of 100 parallel sections, each 6 μm thick. Fourier Transform Infrared Imaging (FTIRI) was used to image each tissue section eleven times under different infrared polarizations (from 0° to 180° polarization states in 20° increments and with an additional 90° polarization), at a spatial resolution of 6.25 μm and a wavenumber step of 8 cm−1. With increasing depth from the articular surface, amide anisotropies increased in the perpendicular sections and decreased in the parallel sections. Both types of tissue sectioning identified a 90° difference between amide I and amide II in the superficial zone of cartilage. The fibrillar distribution in the parallel sections from the superficial zone was shown to not be random. Sugar had the greatest anisotropy in the upper part of the radial zone in the perpendicular sections. The depth-dependent anisotropic data were fitted with a theoretical equation that contained three signature parameters, which illustrate the arcade structure of collagens with the aid of a fibril model. Infrared imaging of both perpendicular and parallel sections provides the possibility of determining the three-dimensional macromolecular structures in articular cartilage. Being sensitive to the orientation of the macromolecular structure in healthy articular cartilage aids the prospect of detecting the early onset of the tissue degradation that may lead to pathological conditions such as osteoarthritis. PMID:21274999

Regulation of coronary blood flow

PubMed Central

Gorlin, Richard

1971-01-01

Coronary blood flow is dependent upon arterial pressure, diastolic time, and small vessel resistance. The system is regulated to achieve a low flow high oxygen extraction and low myocardial Po2. This setting is sensitive to change in oxygen needs. Regulation of blood flow occurs primarily through local intrinsic regulation, most likely through production of vasodilating metabolites in response to minimal degrees of ischaemia. Local regulation appears to dominate over remote regulation in most circumstances. Blood flow distribution to the myocardium is depth dependent as well as regional in variation. Both types of distribution of blood flow are profoundly disturbed in the presence of obstructive coronary atherosclerosis. This results in either concentric myocardial shells or patchy transmural zones of selective ischaemia with clear-cut but local abnormalities in metabolism and performance. Images PMID:4929442

Sensitive zone parameters and curvature radius evaluation for polymer optical fiber curvature sensors

NASA Astrophysics Data System (ADS)

Leal-Junior, Arnaldo G.; Frizera, Anselmo; José Pontes, Maria

2018-03-01

Polymer optical fibers (POFs) are suitable for applications such as curvature sensors, strain, temperature, liquid level, among others. However, for enhancing sensitivity, many polymer optical fiber curvature sensors based on intensity variation require a lateral section. Lateral section length, depth, and surface roughness have great influence on the sensor sensitivity, hysteresis, and linearity. Moreover, the sensor curvature radius increase the stress on the fiber, which leads on variation of the sensor behavior. This paper presents the analysis relating the curvature radius and lateral section length, depth and surface roughness with the sensor sensitivity, hysteresis and linearity for a POF curvature sensor. Results show a strong correlation between the decision parameters behavior and the performance for sensor applications based on intensity variation. Furthermore, there is a trade-off among the sensitive zone length, depth, surface roughness, and curvature radius with the sensor desired performance parameters, which are minimum hysteresis, maximum sensitivity, and maximum linearity. The optimization of these parameters is applied to obtain a sensor with sensitivity of 20.9 mV/°, linearity of 0.9992 and hysteresis below 1%, which represent a better performance of the sensor when compared with the sensor without the optimization.

75 FR 53859 - Airworthiness Directives; Agusta S.p.A. (Agusta) Model A119 and AW119 MKII Helicopters

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-02

... then requires, depending on the depth measurement from the face of the nut, either reidentifying the.... The AD then requires, depending on the depth measurement from the face of the nut, either... depth the gauge is inserted between the rod and the nut before it stops. If the depth measurement is...

Visual Sensitivity of Deepwater Fishes in Lake Superior

PubMed Central

Harrington, Kelly A.; Hrabik, Thomas R.; Mensinger, Allen F.

2015-01-01

The predator-prey interactions in the offshore food web of Lake Superior have been well documented, but the sensory systems mediating these interactions remain unknown. The deepwater sculpin, (Myoxocephalus thompsoni), siscowet (Salvelinus namaycush siscowet), and kiyi (Coregonus kiyi) inhabit low light level environments. To investigate the potential role of vision in predator-prey interactions, electroretinography was used to determine visual sensitivity for each species. Spectral sensitivity curves revealed peak sensitivity at 525 nm for each species which closely corresponds to the prevalent downwelling light spectrum at depth. To determine if sufficient light was available to mediate predator-prey interactions, visual sensitivity was correlated with the intensity of downwelling light in Lake Superior to construct visual depth profiles for each species. Sufficient daytime irradiance exists for visual interactions to approximately 325 m for siscowet and kiyi and 355 m for the deepwater sculpin during summer months. Under full moon conditions, sufficient irradiance exists to elicit ERG response to light available at approximately 30 m for the siscowet and kiyi and 45 m for the deepwater sculpin. Visual interactions are therefore possible at the depths and times when these organisms overlap in the water column indicating that vision may play a far greater role at depth in deep freshwater lakes than had been previously documented. PMID:25646781

SU-E-T-562: Scanned Percent Depth Dose Curve Discrepancy for Photon Beams with Physical Wedge in Place (Varian IX) Using Different Sensitive Volume Ion Chambers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, H; Sarkar, V; Rassiah-Szegedi, P

2014-06-01

Purpose: To investigate and report the discrepancy of scanned percent depth dose (PDD) for photon beams with physical wedge in place when using ion chambers with different sensitive volumes. Methods/Materials: PDD curves of open fields and physical wedged fields (15, 30, 45, and 60 degree wedge) were scanned for photon beams (6MV and 10MV, Varian iX) with field size of 5x5 and 10x10 cm using three common scanning chambers with different sensitive volumes - PTW30013 (0.6cm3), PTW23323 (0.1cm3) and Exradin A16 (0.007cm3). The scanning system software used was OmniPro version 6.2, and the scanning water tank was the Scanditronix Wellhoffermore » RFA 300.The PDD curves from the three chambers were compared. Results: Scanned PDD curves of the same energy beams for open fields were almost identical between three chambers, but the wedged fields showed non-trivial differences. The largest differences were observed between chamber PTW30013 and Exradin A16. The differences increased as physical wedge angle increased. The differences also increased with depth, and were more pronounced for 6MV beam. Similar patterns were shown for both 5x5 and 10x10 cm field sizes. For open fields, all PDD values agreed with each other within 1% at 10cm depth and within 1.62% at 20 cm depth. For wedged fields, the difference of PDD values between PTW30013 and A16 reached 4.09% at 10cm depth, and 5.97% at 20 cm depth for 6MV with 60 degree physical wedge. Conclusion: We observed a significant difference in scanned PDD curves of photon beams with physical wedge in place obtained when using different sensitive volume ion chambers. The PDD curves scanned with the smallest sensitive volume ion chamber showed significant difference from larger chamber results, beyond 10cm depth. We believe this to be caused by varying response to beam hardening by the wedges.« less

The effects of incidence angle on film dosimetry and their consequences in IMRT dose verification.

PubMed

Srivastava, R P; De Wagter, C

2012-10-01

The dosimetric accuracy of EDR2 radiographic film has been rigorously assessed in regular and intensity modulated beams for various incidence angles, including the parallel and perpendicular orientation. There clearly exists confusion in literature regarding the effect of film orientation. The primary aim is to clarify potential sources of the confusion and to gain physical insight into the film orientation effect with a link to radiochromic film as well. An inverse pyramid IMRT field, consisting of six regular and elongated 3 × 20 cm(2) field segments, was studied in perpendicular and parallel orientation. Assessment of film self-perturbation and intrinsic directional sensitivity were also included in the experiments. Finally, the authors investigated the orientational effect in composite beams in the two extreme orientations, i.e., perpendicular and parallel. The study of an inverse pyramid dose profile revealed good agreement between the perpendicular film and the diamond detector within 0.5% in the low-scatter regions for both 6 and 18 MV. The parallel oriented film demonstrated a 3% under-response at 5-cm (6 MV) depth against the perpendicular orientation, but both orientations over responded equally in the central region, which received only scattered dose, at both 5- and 20-cm depths. In a regular 6-MV 5 × 5 cm(2) field, a 4.1% lower film response was observed in the parallel orientation compared to perpendicular orientation. The under response gradually increased to 6% when reducing the field size to 0.5 × 5 cm(2). On the other hand, the film showed a 1.7% lower response in parallel orientation for the large field size of 20 × 20 cm(2) at 5-cm depth but the difference disappeared at 10 cm. At 18 MV, similar but somewhat lower differences were found between the two orientations. The directional sensitivity of the film diminishes with increasing field size and depth. Surprisingly a composite IMRT beam consisting of 20 adjacent strip segments also produced a significant orientational dependence of film response, notwithstanding the large total field size of 20 × 20 cm(2). This analysis allowed the development of a hypothesis about the physics behind the orientational dependence of film response in general and to formulate precautions when using film dosimetry in the dosimetric verification of multibeam treatments.

Measuring sensitivity to viewpoint change with and without stereoscopic cues.

PubMed

Bell, Jason; Dickinson, Edwin; Badcock, David R; Kingdom, Frederick A A

2013-12-04

The speed and accuracy of object recognition is compromised by a change in viewpoint; demonstrating that human observers are sensitive to this transformation. Here we discuss a novel method for simulating the appearance of an object that has undergone a rotation-in-depth, and include an exposition of the differences between perspective and orthographic projections. Next we describe a method by which human sensitivity to rotation-in-depth can be measured. Finally we discuss an apparatus for creating a vivid percept of a 3-dimensional rotation-in-depth; the Wheatstone Eight Mirror Stereoscope. By doing so, we reveal a means by which to evaluate the role of stereoscopic cues in the discrimination of viewpoint rotated shapes and objects.

Recording membrane potential changes through photoacoustic voltage sensitive dye

NASA Astrophysics Data System (ADS)

Zhang, Haichong K.; Kang, Jeeun; Yan, Ping; Abou, Diane S.; Le, Hanh N. D.; Thorek, Daniel L. J.; Kang, Jin U.; Gjedde, Albert; Rahmim, Arman; Wong, Dean F.; Loew, Leslie M.; Boctor, Emad M.

2017-03-01

Monitoring of the membrane potential is possible using voltage sensitive dyes (VSD), where fluorescence intensity changes in response to neuronal electrical activity. However, fluorescence imaging is limited by depth of penetration and high scattering losses, which leads to low sensitivity in vivo systems for external detection. In contrast, photoacoustic (PA) imaging, an emerging modality, is capable of deep tissue, noninvasive imaging by combining near infrared light excitation and ultrasound detection. In this work, we develop the theoretical concept whereby the voltage-dependent quenching of dye fluorescence leads to a reciprocal enhancement of PA intensity. Based on this concept, we synthesized a novel near infrared photoacoustic VSD (PA-VSD) whose PA intensity change is sensitive to membrane potential. In the polarized state, this cyanine-based probe enhances PA intensity while decreasing fluorescence output in a lipid vesicle membrane model. With a 3-9 μM VSD concentration, we measured a PA signal increase in the range of 5.3 % to 18.1 %, and observed a corresponding signal reduction in fluorescence emission of 30.0 % to 48.7 %. A theoretical model successfully accounts for how the experimental PA intensity change depends on fluorescence and absorbance properties of the dye. These results not only demonstrate the voltage sensing capability of the dye, but also indicate the necessity of considering both fluorescence and absorbance spectral sensitivities in order to optimize the characteristics of improved photoacoustic probes. Together, our results demonstrate photoacoustic sensing as a potential new modality for sub-second recording and external imaging of electrophysiological and neurochemical events in the brain.

High resolution subsurface imaging using resonance-enhanced detection in 2nd-harmonic KPFM.

PubMed

Cadena, Maria Jose; Reifenberger, Ronald G; Raman, Arvind

2018-06-28

Second harmonic Kelvin probe force microscopy is a robust mechanism for subsurface imaging at the nanoscale. Here we exploit resonance-enhanced detection as a way to boost the subsurface contrast with higher force sensitivity using lower bias voltages, in comparison to the traditional off-resonance case. In this mode, the second harmonic signal of the electrostatic force is acquired at one of the eigenmode frequencies of the microcantilever. As a result, high-resolution subsurface images are obtained in a variety of nanocomposites. To further understand the subsurface imaging detection upon electrostatic forces, we use a finite element model that approximates the geometry of the probe and sample. This allows the investigation of the contrast mechanism, the depth sensitivity and lateral resolution depending on tip-sample properties. © 2018 IOP Publishing Ltd.

Depth Resolution Dependence on Sample Thickness and Incident Energy in On-Axis Transmission Kikuchi Diffraction in Scanning Electron Microscope (SEM).

PubMed

Brodu, Etienne; Bouzy, Emmanuel

2017-12-01

Transmission Kikuchi diffraction is an emerging technique aimed at producing orientation maps of the structure of materials with a nanometric lateral resolution. This study investigates experimentally the depth resolution of the on-axis configuration, via a twinned silicon bi-crystal sample specifically designed and fabricated. The measured depth resolution varies from 30 to 65 nm in the range 10-30 keV, with a close to linear dependence with incident energy and no dependence with the total sample thickness. The depth resolution is explained in terms of two mechanisms acting concomitantly: generation of Kikuchi diffraction all along the thickness of the sample, associated with continuous absorption on the way out. A model based on the electron mean free path is used to account for the dependence with incident energy of the depth resolution. In addition, based on the results in silicon, the use of the mean absorption coefficient is proposed to predict the depth resolution for any atomic number and incident energy.

Aerosol spectral optical depths - Jet fuel and forest fire smokes

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Livingston, J. M.

1990-01-01

The Ames autotracking airborne sun photometer was used to investigate the spectral depth between 380 and 1020 nm of smokes from a jet fuel pool fire and a forest fire in May and August 1988, respectively. Results show that the forest fire smoke exhibited a stronger wavelength dependence of optical depths than did the jet fuel fire smoke at optical depths less than unity. At optical depths greater than or equal to 1, both smokes showed neutral wavelength dependence, similar to that of an optically thin stratus deck. These results verify findings of earlier investigations and have implications both on the climatic impact of large-scale smokes and on the wavelength-dependent transmission of electromagnetic signals.

The (In)Effectiveness of Simulated Blur for Depth Perception in Naturalistic Images.

PubMed

Maiello, Guido; Chessa, Manuela; Solari, Fabio; Bex, Peter J

2015-01-01

We examine depth perception in images of real scenes with naturalistic variation in pictorial depth cues, simulated dioptric blur and binocular disparity. Light field photographs of natural scenes were taken with a Lytro plenoptic camera that simultaneously captures images at up to 12 focal planes. When accommodation at any given plane was simulated, the corresponding defocus blur at other depth planes was extracted from the stack of focal plane images. Depth information from pictorial cues, relative blur and stereoscopic disparity was separately introduced into the images. In 2AFC tasks, observers were required to indicate which of two patches extracted from these images was farther. Depth discrimination sensitivity was highest when geometric and stereoscopic disparity cues were both present. Blur cues impaired sensitivity by reducing the contrast of geometric information at high spatial frequencies. While simulated generic blur may not assist depth perception, it remains possible that dioptric blur from the optics of an observer's own eyes may be used to recover depth information on an individual basis. The implications of our findings for virtual reality rendering technology are discussed.

The (In)Effectiveness of Simulated Blur for Depth Perception in Naturalistic Images

PubMed Central

Maiello, Guido; Chessa, Manuela; Solari, Fabio; Bex, Peter J.

2015-01-01

We examine depth perception in images of real scenes with naturalistic variation in pictorial depth cues, simulated dioptric blur and binocular disparity. Light field photographs of natural scenes were taken with a Lytro plenoptic camera that simultaneously captures images at up to 12 focal planes. When accommodation at any given plane was simulated, the corresponding defocus blur at other depth planes was extracted from the stack of focal plane images. Depth information from pictorial cues, relative blur and stereoscopic disparity was separately introduced into the images. In 2AFC tasks, observers were required to indicate which of two patches extracted from these images was farther. Depth discrimination sensitivity was highest when geometric and stereoscopic disparity cues were both present. Blur cues impaired sensitivity by reducing the contrast of geometric information at high spatial frequencies. While simulated generic blur may not assist depth perception, it remains possible that dioptric blur from the optics of an observer’s own eyes may be used to recover depth information on an individual basis. The implications of our findings for virtual reality rendering technology are discussed. PMID:26447793

Patient-Specific QA of Spot-Scanning Proton Beams using Radiochromic Film.

PubMed

Chan, Maria F; Chen, Chin-Cheng; Shi, Chengyu; Li, Jingdong; Tang, Xiaoli; Li, Xiang; Mah, Dennis

2017-05-01

Radiochromic film for spot-scanning QA provides high spatial resolution and efficiency gains from one-shot irradiation for multiple depths. However, calibration can be a tedious procedure which may limit widespread use. Moreover, since there may be an energy dependence, which manifests as a depth dependence, this may require additional measurements for each patient. We present a one-scan protocol to simplify the procedure. A calibration using an EBT3 film, exposed by a 6-level step-wedge plan on a Proteus ® PLUS proton system (IBA, Belgium), was performed at depths of 18, 20, 24cm using Plastic Water ® (CIRS, Norfolk, VA). The calibration doses ranged from 65-250 cGy(RBE) (relative biological effectiveness) for proton energies of 170-200 MeV. A clinical prostate+nodes plan was used for validation. The planar doses at selected depths were measured with EBT3 films and analyzed using One-scan protocol (one-scan digitization of QA film and at least one film exposed to a known dose). The gamma passing rates, dose-difference maps, and profiles of 2D planar doses measured with EBT3 film and IBA MatriXX-PT, versus the RayStation TPS calculations were analyzed and compared. The EBT3 film measurement results matched well with the TPS calculation data with an average passing rate of ~95% for 2%/2mm and slightly lower passing rates were obtained from an ion chamber array detector. We were able to demonstrate that the use of a proton step-wedge provided clinically acceptable results and minimized variations between film-scanner orientation, inter-scan, and scanning conditions. Furthermore, for relative dosimetry (calibration is not done at the time of experiment) it could be derived from no more than two films exposed to known doses (one could be zero) for rescaling the master calibration curve at each depth. The sensitivity of the calibration to depth variations has been explored. One-scan protocol results appear to be comparable to that of the ion chamber array detector. The use of a proton step-wedge for calibration of EBT3 film potentially increases efficiency in patient-specific QA of proton beams.

SU-F-T-173: One-Scan Protocol: Verifying the Delivery of Spot-Scanning Proton Beam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chan, M; Li, J; Chen, C

Purpose: Radiochromic film for spot-scanning QA provides high spatial resolution and efficiency gains from one-shot irradiation for multiple depths. However, calibration can be a tedious procedure which may limit widespread use. Moreover, since there may be an energy dependence, which manifests as a depth dependence, this may require additional measurements for each patient. We present a one-scan protocol to simplify the procedure. Methods: We performed the calibration using an EBT3 film at depths of 18, 20, 24cm of Plastic Water exposed by a 6-level step-wedge plan on a Proteus Plus proton system (IBA, Belgium). The calibration doses ranged 65–250 cGy(RBE)more » for proton energies of 170–200MeV. A clinical prostate+nodes plan was used for validation. The planar doses at selected depths were measured with EBT3 films and analyzed using one-scan protocol (one-scan digitization of QA film and at least one film exposed to known dose). The Gamma passing rates, dose-difference maps, and profiles of 2D planar doses measured with EBT3 film, IBA MatriXX PT, versus TPS calculations were analyzed and compared. Results: The EBT3 film measurement results matched well with the TPS calculation data with an average passing rate of ∼95% for 2%/2mm and slightly lower passing rates were obtained from an ion chamber array detector. We were able to demonstrate that the use of a proton step-wedge provided clinically acceptable results and minimized variations between film-scanner orientation, inter-scan, and scanning conditions. Furthermore, it could be derived from no more than two films exposed to known doses (one could be zero) for rescaling the master calibration curve at each depth. Conclusion: The use of a proton step-wedge for calibration of EBT3 film increases efficiency. The sensitivity of the calibration to depth variations has been explored. One-scan protocol results appear to be comparable to that of the ion chamber array detector. One author has a research grant from Ashland Inc., the manufacturer of the GafChromic film.« less

Developmental changes in the balance of disparity, blur and looming/proximity cues to drive ocular alignment and focus

PubMed Central

Horwood, Anna M; Riddell, Patricia M

2015-01-01

Accurate co-ordination of accommodation and convergence is necessary to view near objects and develop fine motor co-ordination. We used a remote haploscopic videorefraction paradigm to measure longitudinal changes in simultaneous ocular accommodation and vergence to targets at different depths, and to all combinations of blur, binocular disparity, and change-in-size (“proximity”) cues. Infants were followed longitudinally and compared to older children and young adults, with the prediction that sensitivity to different cues would change during development. Mean infant responses to the most naturalistic condition were similar to those of adults from 6-7 weeks (accommodation) and 8-9 weeks (vergence). Proximity cues influenced responses most in infants less than 14 weeks of age, but sensitivity declined thereafter. Between 12-28 weeks of age infants were equally responsive to all three cues, while in older children and adults manipulation of disparity resulted in the greatest changes in response. Despite rapid development of visual acuity (thus increasing availability of blur cues), responses to blur were stable throughout development. Our results suggest that during much of infancy, vergence and accommodation responses are not dependent on the development of specific depth cues, but make use of any cues available to drive appropriate changes in response. PMID:24344547

Charge-sensitive front-end electronics with operational amplifiers for CdZnTe detectors

NASA Astrophysics Data System (ADS)

Födisch, P.; Berthel, M.; Lange, B.; Kirschke, T.; Enghardt, W.; Kaever, P.

2016-09-01

Cadmium zinc telluride (CdZnTe, CZT) radiation detectors are suitable for a variety of applications, due to their high spatial resolution and spectroscopic energy performance at room temperature. However, state-of-the-art detector systems require high-performance readout electronics. Though an application-specific integrated circuit (ASIC) is an adequate solution for the readout, requirements of high dynamic range and high throughput are not available in any commercial circuit. Consequently, the present study develops the analog front-end electronics with operational amplifiers for an 8×8 pixelated CZT detector. For this purpose, we modeled an electrical equivalent circuit of the CZT detector with the associated charge-sensitive amplifier (CSA). Based on a detailed network analysis, the circuit design is completed by numerical values for various features such as ballistic deficit, charge-to-voltage gain, rise time, and noise level. A verification of the performance is carried out by synthetic detector signals and a pixel detector. The experimental results with the pixel detector assembly and a 22Na radioactive source emphasize the depth dependence of the measured energy. After pulse processing with depth correction based on the fit of the weighting potential, the energy resolution is 2.2% (FWHM) for the 511 keV photopeak.

Sensitivity analysis of 1-D dynamical model for basin analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cao, S.

1987-01-01

Geological processes related to petroleum generation, migration and accumulation are very complicated in terms of time and variables involved, and it is very difficult to simulate these processes by laboratory experiments. For this reasons, many mathematic/computer models have been developed to simulate these geological processes based on geological, geophysical and geochemical principles. The sensitivity analysis in this study is a comprehensive examination on how geological, geophysical and geochemical parameters influence the reconstructions of geohistory, thermal history and hydrocarbon generation history using the 1-D fluid flow/compaction model developed in the Basin Modeling Group at the University of South Carolina. This studymore » shows the effects of some commonly used parameter such as depth, age, lithology, porosity, permeability, unconformity (eroded thickness and erosion time), temperature at sediment surface, bottom hole temperature, present day heat flow, thermal gradient, thermal conductivity and kerogen type and content on the evolutions of formation thickness, porosity, permeability, pressure with time and depth, heat flow with time, temperature with time and depth, vitrinite reflectance (Ro) and TTI with time and depth, and oil window in terms of time and depth, amount of hydrocarbons generated with time and depth. Lithology, present day heat flow and thermal conductivity are the most sensitive parameters in the reconstruction of temperature history.« less

Ability of primary auditory cortical neurons to detect amplitude modulation with rate and temporal codes: neurometric analysis

PubMed Central

Johnson, Jeffrey S.; Yin, Pingbo; O'Connor, Kevin N.

2012-01-01

Amplitude modulation (AM) is a common feature of natural sounds, and its detection is biologically important. Even though most sounds are not fully modulated, the majority of physiological studies have focused on fully modulated (100% modulation depth) sounds. We presented AM noise at a range of modulation depths to awake macaque monkeys while recording from neurons in primary auditory cortex (A1). The ability of neurons to detect partial AM with rate and temporal codes was assessed with signal detection methods. On average, single-cell synchrony was as or more sensitive than spike count in modulation detection. Cells are less sensitive to modulation depth if tested away from their best modulation frequency, particularly for temporal measures. Mean neural modulation detection thresholds in A1 are not as sensitive as behavioral thresholds, but with phase locking the most sensitive neurons are more sensitive, suggesting that for temporal measures the lower-envelope principle cannot account for thresholds. Three methods of preanalysis pooling of spike trains (multiunit, similar to convergence from a cortical column; within cell, similar to convergence of cells with matched response properties; across cell, similar to indiscriminate convergence of cells) all result in an increase in neural sensitivity to modulation depth for both temporal and rate codes. For the across-cell method, pooling of a few dozen cells can result in detection thresholds that approximate those of the behaving animal. With synchrony measures, indiscriminate pooling results in sensitive detection of modulation frequencies between 20 and 60 Hz, suggesting that differences in AM response phase are minor in A1. PMID:22422997

Methane Emissions From Western Siberian Wetlands: Heterogeneity and Sensitivity to Climate Change

NASA Astrophysics Data System (ADS)

Bohn, T. J.; Lettenmaier, D. P.; Podest, E.; McDonald, K. C.; Sathulur, K.; Bowling, L. C.; Friborg, T.

2007-12-01

Prediction of methane emissions from high-latitude wetlands is important given concerns about their sensitivity to a warming climate. As a basis for prediction of wetland methane emissions at regional scales, we have coupled the Variable Infiltration Capacity macroscale hydrological model (VIC) with the Biosphere-Energy-Transfer- Hydrology terrestrial ecosystem model (BETHY) and a wetland methane emissions model to make large-scale estimates of methane emissions as a function of soil temperature, water table depth, and net primary productivity (NPP), with a parameterization of the sub-grid heterogeneity of the water table depth based on topographic wetness index. Using landcover classifications derived from L-band satellite synthetic aperture radar imagery, we simulated methane emissions for the Chaya River basin in western Siberia, an area that includes the Bakchar Bog, for a retrospective baseline period of 1980-1999, and evaluated their sensitivity to increases in temperature of 0-5 °C and increases in precipitation of 0-15%. The interactions of temperature and precipitation, through their effects on the water table depth, play an important role in determining methane emissions from these wetlands. The balance between these effects varies spatially, and their net effect depends in part on sub- grid topographic heterogeneity. Higher temperatures alone increase methane production in saturated areas, but cause those saturated areas to shrink in extent, resulting in a net reduction in methane emissions. Higher precipitation alone raises water tables and expands the saturated area, resulting in a net increase in methane emissions. Combining a temperature increase of 3 °C and an increase of 10% in precipitation, to represent the climate conditions likely in western Siberia at the end of this century, results in roughly a doubling of annual methane emissions. This work was carried out at the University of Washington, at Purdue University, and at the Jet Propulsion Laboratory, California Institute of Technology, under contract with the National Aeronautics and Space Administration.

Microtopographic control on the ground thermal regime in ice wedge polygons

NASA Astrophysics Data System (ADS)

Abolt, Charles J.; Young, Michael H.; Atchley, Adam L.; Harp, Dylan R.

2018-06-01

The goal of this research is to constrain the influence of ice wedge polygon microtopography on near-surface ground temperatures. Ice wedge polygon microtopography is prone to rapid deformation in a changing climate, and cracking in the ice wedge depends on thermal conditions at the top of the permafrost; therefore, feedbacks between microtopography and ground temperature can shed light on the potential for future ice wedge cracking in the Arctic. We first report on a year of sub-daily ground temperature observations at 5 depths and 9 locations throughout a cluster of low-centered polygons near Prudhoe Bay, Alaska, and demonstrate that the rims become the coldest zone of the polygon during winter, due to thinner snowpack. We then calibrate a polygon-scale numerical model of coupled thermal and hydrologic processes against this dataset, achieving an RMSE of less than 1.1 °C between observed and simulated ground temperature. Finally, we conduct a sensitivity analysis of the model by systematically manipulating the height of the rims and the depth of the troughs and tracking the effects on ice wedge temperature. The results indicate that winter temperatures in the ice wedge are sensitive to both rim height and trough depth, but more sensitive to rim height. Rims act as preferential outlets of subsurface heat; increasing rim size decreases winter temperatures in the ice wedge. Deeper troughs lead to increased snow entrapment, promoting insulation of the ice wedge. The potential for ice wedge cracking is therefore reduced if rims are destroyed or if troughs subside, due to warmer conditions in the ice wedge. These findings can help explain the origins of secondary ice wedges in modern and ancient polygons. The findings also imply that the potential for re-establishing rims in modern thermokarst-affected terrain will be limited by reduced cracking activity in the ice wedges, even if regional air temperatures stabilize.

Formant-Frequency Variation and Informational Masking of Speech by Extraneous Formants: Evidence Against Dynamic and Speech-Specific Acoustical Constraints

PubMed Central

2014-01-01

How speech is separated perceptually from other speech remains poorly understood. Recent research indicates that the ability of an extraneous formant to impair intelligibility depends on the variation of its frequency contour. This study explored the effects of manipulating the depth and pattern of that variation. Three formants (F1+F2+F3) constituting synthetic analogues of natural sentences were distributed across the 2 ears, together with a competitor for F2 (F2C) that listeners must reject to optimize recognition (left = F1+F2C; right = F2+F3). The frequency contours of F1 − F3 were each scaled to 50% of their natural depth, with little effect on intelligibility. Competitors were created either by inverting the frequency contour of F2 about its geometric mean (a plausibly speech-like pattern) or using a regular and arbitrary frequency contour (triangle wave, not plausibly speech-like) matched to the average rate and depth of variation for the inverted F2C. Adding a competitor typically reduced intelligibility; this reduction depended on the depth of F2C variation, being greatest for 100%-depth, intermediate for 50%-depth, and least for 0%-depth (constant) F2Cs. This suggests that competitor impact depends on overall depth of frequency variation, not depth relative to that for the target formants. The absence of tuning (i.e., no minimum in intelligibility for the 50% case) suggests that the ability to reject an extraneous formant does not depend on similarity in the depth of formant-frequency variation. Furthermore, triangle-wave competitors were as effective as their more speech-like counterparts, suggesting that the selection of formants from the ensemble also does not depend on speech-specific constraints. PMID:24842068

Stable isotopes of water in estimation of groundwater dependence in peatlands

NASA Astrophysics Data System (ADS)

Isokangas, Elina; Rossi, Pekka; Ronkanen, Anna-Kaisa; Marttila, Hannu; Rozanski, Kazimierz; Kløve, Bjørn

2016-04-01

Peatland hydrology and ecology can be irreversibly affected by anthropogenic actions or climate change. Especially sensitive are groundwater dependent areas which are difficult to determine. Environmental tracers such as stable isotopes of water are efficient tools to identify these dependent areas and study water flow patterns in peatlands. In this study the groundwater dependence of a Finnish peatland complex situated next to an esker aquifer was studied. Groundwater seepage areas in the peatland were localized by thermal imaging and the subsoil structure was determined using ground penetrating radar. Water samples were collected for stable isotopes of water (δ18O and δ2H), temperature, pH and electrical conductivity at 133 locations of the studied peatland (depth of 10 cm) at approximately 100 m intervals during 4 August - 11 August 2014. In addition, 10 vertical profiles were sampled (10, 30, 60 and 90 cm depth) for the same parameters and for hydraulic conductivity. The cavity ring-down spectroscopy (CRDS) was applied to measure δ18O and δ2H values. The local meteoric water line was determined using precipitation samples from Nuoritta station located 17 km west of the study area and the local evaporation line was defined using water samples from lake Sarvilampi situated on the studied peatland complex. Both near-surface spatial survey and depth profiles of peatland water revealed very wide range in stable isotope composition, from approximately -13.0 to -6.0 ‰ for δ18O and from -94 to -49 ‰ for δ2H, pointing to spatially varying influence of groundwater input from near-by esker aquifer. In addition, position of the data points with respect to the local meteoric water line showed spatially varying degree of evaporation of peatland water. Stable isotope signatures of peatland water in combination with thermal images delineated the specific groundwater dependent areas. By combining the information gained from different types of observations, the conceptual hydrological model of the studied peatland complex, including groundwater - surface water interaction, was built in a new, innovative way.

Long-wavelength optical coherence tomography at 1.7 µm for enhanced imaging depth

PubMed Central

Sharma, Utkarsh; Chang, Ernest W.; Yun, Seok H.

2009-01-01

Multiple scattering in a sample presents a significant limitation to achieve meaningful structural information at deeper penetration depths in optical coherence tomography (OCT). Previous studies suggest that the spectral region around 1.7 µm may exhibit reduced scattering coefficients in biological tissues compared to the widely used wavelengths around 1.3 µm. To investigate this long-wavelength region, we developed a wavelength-swept laser at 1.7 µm wavelength and conducted OCT or optical frequency domain imaging (OFDI) for the first time in this spectral range. The constructed laser is capable of providing a wide tuning range from 1.59 to 1.75 µm over 160 nm. When the laser was operated with a reduced tuning range over 95 nm at a repetition rate of 10.9 kHz and an average output power of 12.3 mW, the OFDI imaging system exhibited a sensitivity of about 100 dB and axial and lateral resolution of 24 µm and 14 µm, respectively. We imaged several phantom and biological samples using 1.3 µm and 1.7 µm OFDI systems and found that the depth-dependent signal decay rate is substantially lower at 1.7 µm wavelength in most, if not all samples. Our results suggest that this imaging window may offer an advantage over shorter wavelengths by increasing the penetration depths as well as enhancing image contrast at deeper penetration depths where otherwise multiple scattered photons dominate over ballistic photons. PMID:19030057

Feedbacks between managed irrigation and water availability: Diagnosing temporal and spatial patterns using an integrated hydrologic model

NASA Astrophysics Data System (ADS)

Condon, Laura E.; Maxwell, Reed M.

2014-03-01

Groundwater-fed irrigation has been shown to deplete groundwater storage, decrease surface water runoff, and increase evapotranspiration. Here we simulate soil moisture-dependent groundwater-fed irrigation with an integrated hydrologic model. This allows for direct consideration of feedbacks between irrigation demand and groundwater depth. Special attention is paid to system dynamics in order to characterized spatial variability in irrigation demand and response to increased irrigation stress. A total of 80 years of simulation are completed for the Little Washita Basin in Southwestern Oklahoma, USA spanning a range of agricultural development scenarios and management practices. Results show regionally aggregated irrigation impacts consistent with other studies. However, here a spectral analysis reveals that groundwater-fed irrigation also amplifies the annual streamflow cycle while dampening longer-term cyclical behavior with increased irrigation during climatological dry periods. Feedbacks between the managed and natural system are clearly observed with respect to both irrigation demand and utilization when water table depths are within a critical range. Although the model domain is heterogeneous with respect to both surface and subsurface parameters, relationships between irrigation demand, water table depth, and irrigation utilization are consistent across space and between scenarios. Still, significant local heterogeneities are observed both with respect to transient behavior and response to stress. Spatial analysis of transient behavior shows that farms with groundwater depths within a critical depth range are most sensitive to management changes. Differences in behavior highlight the importance of groundwater's role in system dynamics in addition to water availability.

Local identifiability and sensitivity analysis of neuromuscular blockade and depth of hypnosis models.

PubMed

Silva, M M; Lemos, J M; Coito, A; Costa, B A; Wigren, T; Mendonça, T

2014-01-01

This paper addresses the local identifiability and sensitivity properties of two classes of Wiener models for the neuromuscular blockade and depth of hypnosis, when drug dose profiles like the ones commonly administered in the clinical practice are used as model inputs. The local parameter identifiability was assessed based on the singular value decomposition of the normalized sensitivity matrix. For the given input signal excitation, the results show an over-parameterization of the standard pharmacokinetic/pharmacodynamic models. The same identifiability assessment was performed on recently proposed minimally parameterized parsimonious models for both the neuromuscular blockade and the depth of hypnosis. The results show that the majority of the model parameters are identifiable from the available input-output data. This indicates that any identification strategy based on the minimally parameterized parsimonious Wiener models for the neuromuscular blockade and for the depth of hypnosis is likely to be more successful than if standard models are used. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Depth-resolved imaging of capillary networks in retina and choroid using ultrahigh sensitive optical microangiography

PubMed Central

Wang, Ruikang K.; An, Lin; Francis, Peter; Wilson, David J.

2010-01-01

We demonstrate the depth-resolved and detailed ocular perfusion maps within retina and choroid can be obtained from an ultrahigh sensitive optical microangiography (OMAG). As opposed to the conventional OMAG, we apply the OMAG algorithm along the slow scanning axis to achieve the ultrahigh sensitive imaging to the slow flows within capillaries. We use an 840nm system operating at an imaging rate of 400 frames/sec that requires 3 sec to complete one 3D scan of ~3x3 mm2 area on retina. We show the superior imaging performance of OMAG to provide functional images of capillary level microcirculation at different land-marked depths within retina and choroid that correlate well with the standard retinal pathology. PMID:20436605

Photoacoustic imaging with planoconcave optical microresonator sensors: feasibility studies based on phantom imaging

NASA Astrophysics Data System (ADS)

Guggenheim, James A.; Zhang, Edward Z.; Beard, Paul C.

2017-03-01

The planar Fabry-Pérot (FP) sensor provides high quality photoacoustic (PA) images but beam walk-off limits sensitivity and thus penetration depth to ≍1 cm. Planoconcave microresonator sensors eliminate beam walk-off enabling sensitivity to be increased by an order-of-magnitude whilst retaining the highly favourable frequency response and directional characteristics of the FP sensor. The first tomographic PA images obtained in a tissue-realistic phantom using the new sensors are described. These show that the microresonator sensors provide near identical image quality as the planar FP sensor but with significantly greater penetration depth (e.g. 2-3cm) due to their higher sensitivity. This offers the prospect of whole body small animal imaging and clinical imaging to depths previously unattainable using the FP planar sensor.

U.S. Geological Survey Combined Well-Bore Flow and Depth-Dependent Water Sampler

USGS Publications Warehouse

Izbicki, John A.; Christensen, Allen H.; Hanson, Randall T.; Martin, Peter; Crawford, Steven M.; Smith, Gregory A.

1999-01-01

The U.S. Geological Survey has developed a combined well-bore flow and depth-dependent sample collection tool. It is suitable for use in existing production wells having limited access and clearances as small as 1 inch. The combination of well-bore flow and depth-dependent water-quality data is especially effective in assessing changes in aquifer properties and water quality with depth. These are direct measures of changes in well yield and ground-water quality with depth under actual operating conditions. Combinations of other geophysical tools capable of making these measurements, such as vertical-axis current meters used with wire-line samplers, are commercially available but these tools are large and can not easily enter existing production wells.

Poster — Thur Eve — 45: Comparison of different Monte Carlo methods of scoring linear energy transfer in modulated proton therapy beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Granville, DA; Sawakuchi, GO

2014-08-15

In this work, we demonstrate inconsistencies in commonly used Monte Carlo methods of scoring linear energy transfer (LET) in proton therapy beams. In particle therapy beams, the LET is an important parameter because the relative biological effectiveness (RBE) depends on it. LET is often determined using Monte Carlo techniques. We used a realistic Monte Carlo model of a proton therapy nozzle to score proton LET in spread-out Bragg peak (SOBP) depth-dose distributions. We used three different scoring and calculation techniques to determine average LET at varying depths within a 140 MeV beam with a 4 cm SOBP and a 250more » MeV beam with a 10 cm SOBP. These techniques included fluence-weighted (Φ-LET) and dose-weighted average (D-LET) LET calculations from: 1) scored energy spectra converted to LET spectra through a lookup table, 2) directly scored LET spectra and 3) accumulated LET scored ‘on-the-fly’ during simulations. All protons (primary and secondary) were included in the scoring. Φ-LET was found to be less sensitive to changes in scoring technique than D-LET. In addition, the spectral scoring methods were sensitive to low-energy (high-LET) cutoff values in the averaging. Using cutoff parameters chosen carefully for consistency between techniques, we found variations in Φ-LET values of up to 1.6% and variations in D-LET values of up to 11.2% for the same irradiation conditions, depending on the method used to score LET. Variations were largest near the end of the SOBP, where the LET and energy spectra are broader.« less

High sensitivity optical molecular imaging system

NASA Astrophysics Data System (ADS)

An, Yu; Yuan, Gao; Huang, Chao; Jiang, Shixin; Zhang, Peng; Wang, Kun; Tian, Jie

2018-02-01

Optical Molecular Imaging (OMI) has the advantages of high sensitivity, low cost and ease of use. By labeling the regions of interest with fluorescent or bioluminescence probes, OMI can noninvasively obtain the distribution of the probes in vivo, which play the key role in cancer research, pharmacokinetics and other biological studies. In preclinical and clinical application, the image depth, resolution and sensitivity are the key factors for researchers to use OMI. In this paper, we report a high sensitivity optical molecular imaging system developed by our group, which can improve the imaging depth in phantom to nearly 5cm, high resolution at 2cm depth, and high image sensitivity. To validate the performance of the system, special designed phantom experiments and weak light detection experiment were implemented. The results shows that cooperated with high performance electron-multiplying charge coupled device (EMCCD) camera, precision design of light path system and high efficient image techniques, our OMI system can simultaneously collect the light-emitted signals generated by fluorescence molecular imaging, bioluminescence imaging, Cherenkov luminance and other optical imaging modality, and observe the internal distribution of light-emitting agents fast and accurately.

Time-resolved absorption and hemoglobin concentration difference maps: a method to retrieve depth-related information on cerebral hemodynamics.

NASA Astrophysics Data System (ADS)

Montcel, Bruno; Chabrier, Renée; Poulet, Patrick

2006-12-01

Time-resolved diffuse optical methods have been applied to detect hemodynamic changes induced by cerebral activity. We describe a near infrared spectroscopic (NIRS) reconstruction free method which allows retrieving depth-related information on absorption variations. Variations in the absorption coefficient of tissues have been computed over the duration of the whole experiment, but also over each temporal step of the time-resolved optical signal, using the microscopic Beer-Lambert law.Finite element simulations show that time-resolved computation of the absorption difference as a function of the propagation time of detected photons is sensitive to the depth profile of optical absorption variations. Differences in deoxyhemoglobin and oxyhemoglobin concentrations can also be calculated from multi-wavelength measurements. Experimental validations of the simulated results have been obtained for resin phantoms. They confirm that time-resolved computation of the absorption differences exhibited completely different behaviours, depending on whether these variations occurred deeply or superficially. The hemodynamic response to a short finger tapping stimulus was measured over the motor cortex and compared to experiments involving Valsalva manoeuvres. Functional maps were also calculated for the hemodynamic response induced by finger tapping movements.

Time-resolved absorption and hemoglobin concentration difference maps: a method to retrieve depth-related information on cerebral hemodynamics.

PubMed

Montcel, Bruno; Chabrier, Renée; Poulet, Patrick

2006-12-11

Time-resolved diffuse optical methods have been applied to detect hemodynamic changes induced by cerebral activity. We describe a near infrared spectroscopic (NIRS) reconstruction free method which allows retrieving depth-related information on absorption variations. Variations in the absorption coefficient of tissues have been computed over the duration of the whole experiment, but also over each temporal step of the time-resolved optical signal, using the microscopic Beer-Lambert law.Finite element simulations show that time-resolved computation of the absorption difference as a function of the propagation time of detected photons is sensitive to the depth profile of optical absorption variations. Differences in deoxyhemoglobin and oxyhemoglobin concentrations can also be calculated from multi-wavelength measurements. Experimental validations of the simulated results have been obtained for resin phantoms. They confirm that time-resolved computation of the absorption differences exhibited completely different behaviours, depending on whether these variations occurred deeply or superficially. The hemodynamic response to a short finger tapping stimulus was measured over the motor cortex and compared to experiments involving Valsalva manoeuvres. Functional maps were also calculated for the hemodynamic response induced by finger tapping movements.

Strategies to Improve the Accuracy of Mars-GRAM Sensitivity Studies at Large Optical Depths

NASA Technical Reports Server (NTRS)

Justh, Hilary L.; Justus, Carl G.; Badger, Andrew M.

2010-01-01

The poster provides an overview of techniques to improve the Mars Global Reference Atmospheric Model (Mars-GRAM) sensitivity. It has been discovered during the Mars Science Laboratory (MSL) site selection process that the Mars Global Reference Atmospheric Model (Mars-GRAM) when used for sensitivity studies for TES MapYear = 0 and large optical depth values such as tau = 3 is less than realistic. A preliminary fix has been made to Mars-GRAM by adding a density factor value that was determined for tau = 0.3, 1 and 3.

Complicated Grief & Depression in Young Adults: Personality & Relationship Quality

PubMed Central

Herberman Mash, Holly B.; Fullerton, Carol S.; Shear, M. Katherine; Ursano, Robert J.

2014-01-01

Young adults experience problematic responses to loss more often than is commonly recognized. Few empirical studies have examined the contribution of intra- and interpersonal characteristics to grief and depression in bereaved young adults. This study investigated the association of dependency and quality of the relationship with the deceased (i.e., depth and conflict) with complicated grief (CG) and depression. Participants were 157 young adults aged 17–29 who experienced loss of a family member or close friend within the past three years (M = 1.74 years). Participants completed the Inventory of Complicated Grief, Beck Depression Inventory, Depth and Conflict subscales of the Quality of Relationships Inventory, and the Dependency subscale of the Depressive Experiences Questionnaire. Relationships among dependency and interpersonal depth and conflict and CG and depression were examined through analyses of covariance. Sixteen percent of participants met criteria for CG and 34% had mild to severe depression. Dependency and depth were independently related to CG and dependency was related to depression, but the pattern of associations was somewhat different for each outcome. Greater depth was associated with CG, at both high and low levels of dependency. High levels of dependency were related to more depressive symptoms. Interpretation of the findings is limited by the relatively small sample size and cross-sectional design. CG and depression are related but distinct responses to loss. Although dependency is associated with both CG and depression following loss, relationships between the bereaved and deceased that are characterized by high levels of depth are particularly related to the development of CG symptoms. PMID:24921421

Sensitivity and specificity considerations for fMRI encoding, decoding, and mapping of auditory cortex at ultra-high field.

PubMed

Moerel, Michelle; De Martino, Federico; Kemper, Valentin G; Schmitter, Sebastian; Vu, An T; Uğurbil, Kâmil; Formisano, Elia; Yacoub, Essa

2018-01-01

Following rapid technological advances, ultra-high field functional MRI (fMRI) enables exploring correlates of neuronal population activity at an increasing spatial resolution. However, as the fMRI blood-oxygenation-level-dependent (BOLD) contrast is a vascular signal, the spatial specificity of fMRI data is ultimately determined by the characteristics of the underlying vasculature. At 7T, fMRI measurement parameters determine the relative contribution of the macro- and microvasculature to the acquired signal. Here we investigate how these parameters affect relevant high-end fMRI analyses such as encoding, decoding, and submillimeter mapping of voxel preferences in the human auditory cortex. Specifically, we compare a T 2 * weighted fMRI dataset, obtained with 2D gradient echo (GE) EPI, to a predominantly T 2 weighted dataset obtained with 3D GRASE. We first investigated the decoding accuracy based on two encoding models that represented different hypotheses about auditory cortical processing. This encoding/decoding analysis profited from the large spatial coverage and sensitivity of the T 2 * weighted acquisitions, as evidenced by a significantly higher prediction accuracy in the GE-EPI dataset compared to the 3D GRASE dataset for both encoding models. The main disadvantage of the T 2 * weighted GE-EPI dataset for encoding/decoding analyses was that the prediction accuracy exhibited cortical depth dependent vascular biases. However, we propose that the comparison of prediction accuracy across the different encoding models may be used as a post processing technique to salvage the spatial interpretability of the GE-EPI cortical depth-dependent prediction accuracy. Second, we explored the mapping of voxel preferences. Large-scale maps of frequency preference (i.e., tonotopy) were similar across datasets, yet the GE-EPI dataset was preferable due to its larger spatial coverage and sensitivity. However, submillimeter tonotopy maps revealed biases in assigned frequency preference and selectivity for the GE-EPI dataset, but not for the 3D GRASE dataset. Thus, a T 2 weighted acquisition is recommended if high specificity in tonotopic maps is required. In conclusion, different fMRI acquisitions were better suited for different analyses. It is therefore critical that any sequence parameter optimization considers the eventual intended fMRI analyses and the nature of the neuroscience questions being asked. Copyright © 2017 Elsevier Inc. All rights reserved.

A diffusion-free and linear-energy-transfer-independent nanocomposite Fricke gel dosimeter

NASA Astrophysics Data System (ADS)

Maeyama, T.; Fukunishi, N.; Ishikawa, K. L.; Furuta, T.; Fukasaku, K.; Takagi, S.; Noda, S.; Himeno, R.; Fukuda, S.

2014-03-01

We report a new magnetic-resonance-imaging (MRI) based nanocomposite Fricke gel (NC-FG) dosimeter system, which is free from two main drawbacks of conventional Fricke gel dosimeters, namely, the diffusion of the radiation products and the linear-energy-transfer (LET) dependence of the radiation sensitivity when used for ion beams. The NC-FG dosimeter was prepared by incorporating 1% (w/w) clay nanoparticles into deaerated Fricke gel. We have dosimetrically characterized the NC-FG by using MRI measurements after irradiation with a monoenergetic 290 MeV/nucleon carbon beam. No diffusion of the radiation products was observed during nine days after the irradiation. Moreover, its response faithfully reproduced the depth-dose distribution measured by an ionization chamber, which indicates the absence of the LET dependence. Also, the NC-FG dosimeter exhibited a good linearity up to 800 Gy.

Induced radioactivity of LDEF materials and structural components

NASA Technical Reports Server (NTRS)

Harmon, B. A.; Laird, C. E.; Fishman, G. J.; Parnell, T. A.; Camp, D. C.; Frederick, C. E.; Hurley, D. L.; Lindstrom, D. J.; Moss, C. E.; Reedy, R. C.;

A Generic 1D Forward Modeling and Inversion Algorithm for TEM Sounding with an Arbitrary Horizontal Loop

NASA Astrophysics Data System (ADS)

Li, Zhanhui; Huang, Qinghua; Xie, Xingbing; Tang, Xingong; Chang, Liao

2016-08-01

We present a generic 1D forward modeling and inversion algorithm for transient electromagnetic (TEM) data with an arbitrary horizontal transmitting loop and receivers at any depth in a layered earth. Both the Hankel and sine transforms required in the forward algorithm are calculated using the filter method. The adjoint-equation method is used to derive the formulation of data sensitivity at any depth in non-permeable media. The inversion algorithm based on this forward modeling algorithm and sensitivity formulation is developed using the Gauss-Newton iteration method combined with the Tikhonov regularization. We propose a new data-weighting method to minimize the initial model dependence that enhances the convergence stability. On a laptop with a CPU of i7-5700HQ@3.5 GHz, the inversion iteration of a 200 layered input model with a single receiver takes only 0.34 s, while it increases to only 0.53 s for the data from four receivers at a same depth. For the case of four receivers at different depths, the inversion iteration runtime increases to 1.3 s. Modeling the data with an irregular loop and an equal-area square loop indicates that the effect of the loop geometry is significant at early times and vanishes gradually along the diffusion of TEM field. For a stratified earth, inversion of data from more than one receiver is useful in noise reducing to get a more credible layered earth. However, for a resistive layer shielded below a conductive layer, increasing the number of receivers on the ground does not have significant improvement in recovering the resistive layer. Even with a down-hole TEM sounding, the shielded resistive layer cannot be recovered if all receivers are above the shielded resistive layer. However, our modeling demonstrates remarkable improvement in detecting the resistive layer with receivers in or under this layer.

Evaluation of Kodak EDR2 film for dose verification of intensity modulated radiation therapy delivered by a static multileaf collimator.

PubMed

Zhu, X R; Jursinic, P A; Grimm, D F; Lopez, F; Rownd, J J; Gillin, M T

2002-08-01

A new type of radiographic film, Kodak EDR2 film, was evaluated for dose verification of intensity modulated radiation therapy (IMRT) delivered by a static multileaf collimator (SMLC). A sensitometric curve of EDR2 film irradiated by a 6 MV x-ray beam was compared with that of Kodak X-OMAT V (XV) film. The effects of field size, depth and dose rate on the sensitometric curve were also studied. It is found that EDR2 film is much less sensitive than XV film. In high-energy x-ray beams, the double hit process is the dominant mechanism that renders the grains on EDR2 films developable. As a result, in the dose range that is commonly used for film dosimetry for IMRT and conventional external beam therapy, the sensitometric curves of EDR2 films cannot be approximated as a linear function, OD = c * D. Within experimental uncertainty, the film sensitivity does not depend on the dose rate (50 vs 300 MU/min) or dose per pulse (from 1.0 x 10(-4) to 4.21 x 10(-4) Gy/pulse). Field sizes and depths (up to field size of 10 x 10 cm2 and depth = 10 cm) have little effect on the sensitometric curves. Percent depth doses (PDDs) for both 6 and 23 MV x rays were measured with both EDR2 and XV films and compared with ion chamber data. Film data are within 2.5% of the ion chamber results. Dose profiles measured with EDR2 film are consistent with those measured with an ion chamber. Examples of measured IMRT isodose distributions versus calculated isodoses are presented. We have used EDR2 films for verification of all IMRT patients treated by SMLC in our clinic. In most cases, with EDR2 film, actual clinical daily fraction doses can be used for verification of composite isodose distributions of SMLC-based IMRT.

Development of Relative Disparity Sensitivity in Human Visual Cortex.

PubMed

Norcia, Anthony M; Gerhard, Holly E; Meredith, Wesley J

2017-06-07

Stereopsis is the primary cue underlying our ability to make fine depth judgments. In adults, depth discriminations are supported largely by relative rather than absolute binocular disparity, and depth is perceived primarily for horizontal rather than vertical disparities. Although human infants begin to exhibit disparity-specific responses between 3 and 5 months of age, it is not known how relative disparity mechanisms develop. Here we show that the specialization for relative disparity is highly immature in 4- to 6-month-old infants but is adult-like in 4- to 7-year-old children. Disparity-tuning functions for horizontal and vertical disparities were measured using the visual evoked potential. Infant relative disparity thresholds, unlike those of adults, were equal for vertical and horizontal disparities. Their horizontal disparity thresholds were a factor of ∼10 higher than adults, but their vertical disparity thresholds differed by a factor of only ∼4. Horizontal relative disparity thresholds for 4- to 7-year-old children were comparable with those of adults at ∼0.5 arcmin. To test whether infant immaturity was due to spatial limitations or insensitivity to interocular correlation, highly suprathreshold horizontal and vertical disparities were presented in alternate regions of the display, and the interocular correlation of the interdigitated regions was varied from 0% to 100%. This manipulation regulated the availability of coarse-scale relative disparity cues. Adult and infant responses both increased with increasing interocular correlation by similar magnitudes, but adult responses increased much more for horizontal disparities, further evidence for qualitatively immature stereopsis based on relative disparity at 4-6 months of age. SIGNIFICANCE STATEMENT Stereopsis, our ability to sense depth from horizontal image disparity, is among the finest spatial discriminations made by the primate visual system. Fine stereoscopic depth discriminations depend critically on comparisons of disparity relationships in the image that are supported by relative disparity cues rather than the estimation of single, absolute disparities. Very young human and macaque infants are sensitive to absolute disparity, but no previous study has specifically studied the development of relative disparity sensitivity, a hallmark feature of adult stereopsis. Here, using high-density EEG recordings, we show that 4- to 6-month-old infants display both quantitative and qualitative response immaturities for relative disparity information. Relative disparity responses are adult-like no later than 4-7 years of age. Copyright © 2017 the authors 0270-6474/17/375608-12$15.00/0.

Depth-dependent positron annihilation in different polymers

NASA Astrophysics Data System (ADS)

Yang, J.; Zhang, P.; Cheng, G. D.; Li, D. X.; Wu, H. B.; Li, Z. X.; Cao, X. Z.; Jia, Q. J.; Yu, R. S.; Wang, B. Y.

2013-09-01

Depth-dependent positron annihilation Doppler broadening measurements were conducted for polymers with different chemical compositions. Variations of the S parameter with respect to incident positron energy were observed. For pure hydrocarbons PP, HDPE and oxygen-containing polymer PC, S parameter rises with increasing positron implantation depth. While for PI and fluoropolymers like PTFE, ETFE and PVF, S parameter decreases with higher positron energy. For chlorine-containing polymer PVDC, S parameter remains nearly constant at all incident positron energies. It is suggested that these three variation trends are resulted from a competitive effect between the depth-dependent positronium formation and the influence of highly electronegative atoms on positron annihilation characteristics.

Amplitude-modulation detection by gerbils in reverberant sound fields.

PubMed

Lingner, Andrea; Kugler, Kathrin; Grothe, Benedikt; Wiegrebe, Lutz

2013-08-01

Reverberation can dramatically reduce the depth of amplitude modulations which are critical for speech intelligibility. Psychophysical experiments indicate that humans' sensitivity to amplitude modulation in reverberation is better than predicted from the acoustic modulation depth at the receiver position. Electrophysiological studies on reverberation in rabbits highlight the contribution of neurons sensitive to interaural correlation. Here, we use a prepulse-inhibition paradigm to quantify the gerbils' amplitude modulation threshold in both anechoic and reverberant virtual environments. Data show that prepulse inhibition provides a reliable method for determining the gerbils' AM sensitivity. However, we find no evidence for perceptual restoration of amplitude modulation in reverberation. Instead, the deterioration of AM sensitivity in reverberant conditions can be quantitatively explained by the reduced modulation depth at the receiver position. We suggest that the lack of perceptual restoration is related to physical properties of the gerbil's ear input signals and inner-ear processing as opposed to shortcomings of their binaural neural processing. Copyright © 2013 Elsevier B.V. All rights reserved.

Giant magneto-impedance and magneto-inductive effects in amorphous alloys

NASA Astrophysics Data System (ADS)

Panina, L. V.; Mohri, K.; Bushida, K.; Noda, M.

1994-11-01

Recent experiments have discovered giant and sensitive magneto-impedance and magneto-inductive effects in FeCoSiB amorphous wires. These effects include a sensitive change in an ac wire voltage with the application of a small dc longitudinal magnetic field. At low frequencies (1-10 kHz) the inductive voltage drops by 50% for a field of 2 Oe (25%/Oe) reflecting a strong field dependence of the circumferential permeability. At higher frequencies (0.1-10 MHz) when the skin effect is essential, the amplitude of the total wire voltage decreases by 40%-60% for fields of 3-10 Oe (about 10%/Oe). These effects exhibit no hysteresis for the variation of an applied field and can be obtained even in wires of 1 mm length and a few micrometer diameter. These characteristics are very useful to constitute a highly sensitive microsensor head to detect local fields of the order of 10(exp -5) Oe. In this paper, we review recently obtained experimental results on magneto-inductive and magneto-impedance effects and present a detailed discussion for their mechanism, developing a general approach in terms of ac complex impedance in a magnetic conductor. In the case of a strong skin effect the total wire impedance depends on the circumferential permeability through the penetration depth, resulting in the giant magneto-impedance effect.

The role of eye movements in depth from motion parallax during infancy

PubMed Central

Nawrot, Elizabeth; Nawrot, Mark

2013-01-01

Motion parallax is a motion-based, monocular depth cue that uses an object's relative motion and velocity as a cue to relative depth. In adults, and in monkeys, a smooth pursuit eye movement signal is used to disambiguate the depth-sign provided by these relative motion cues. The current study investigates infants' perception of depth from motion parallax and the development of two oculomotor functions, smooth pursuit and the ocular following response (OFR) eye movements. Infants 8 to 20 weeks of age were presented with three tasks in a single session: depth from motion parallax, smooth pursuit tracking, and OFR to translation. The development of smooth pursuit was significantly related to age, as was sensitivity to motion parallax. OFR eye movements also corresponded to both age and smooth pursuit gain, with groups of infants demonstrating asymmetric function in both types of eye movements. These results suggest that the development of the eye movement system may play a crucial role in the sensitivity to depth from motion parallax in infancy. Moreover, describing the development of these oculomotor functions in relation to depth perception may aid in the understanding of certain visual dysfunctions. PMID:24353309

Preliminary design and performance of an advanced gamma ray spectrometer for future orbiter missions. [composition and evolution of planets

NASA Technical Reports Server (NTRS)

Metzger, A. E.; Parker, R. H.; Arnold, J. R.; Reedy, R. C.; Trombka, J. I.

1975-01-01

A knowledge of the composition of planets, satellites, and asteroids is of primary importance in understanding the formation and evolution of the solar system. Gamma-ray spectroscopy is capable of measuring the composition of meter-depth surface material from orbit around any body possessing little or no atmosphere. Measurement sensitivity is determined by detector efficiency and resolution, counting time, and the background flux while the effective spatial resolution depends upon the field-of-view and counting time together with the regional contrast in composition. The advantages of using germanium as a detector of gamma rays in space are illustrated experimentally and a compact instrument cooled by passive thermal radiation is described. Calculations of the expected sensitivity of this instrument at the Moon and Mars show that at least a dozen elements will be detected, twice the number which have been isolated in the Apollo gamma-ray data.

Butterfly-valve inductive orientation detector

NASA Astrophysics Data System (ADS)

Garrett, Steven

1980-04-01

Relative changes of inductance ΔL/L of a single layer coil surrounding a thin electrically conducting disk which can rotate about an axis perpendicular to the coil axis are studied experimentally as a means of measuring angular displacements. ΔL/L is found to be a strong function of disk diameter and is weakly dependent on the ratio of disk thickness to electromagnetic skin depth when this ratio is of the order unity. Values of ΔL/L as a function of disk diameter are given for lead, brass and copper. Detection sensitivities using a resonant tank circuit or an astatic transformer are given in terms of ΔL/L and it is shown that sensitivities of the order of 10-3 to 10-4 deg are practical. Application of this system to the Rayleigh disk and cryogenic environments are emphasized and an expression for the magnetic torque due to detection currents is given.

Advanced Nanoindentation Testing for Studying Strain-Rate Sensitivity and Activation Volume

NASA Astrophysics Data System (ADS)

Maier-Kiener, Verena; Durst, Karsten

2017-11-01

Nanoindentation became a versatile tool for testing local mechanical properties beyond hardness and modulus. By adapting standard nanoindentation test methods, simple protocols capable of probing thermally activated deformation processes can be accomplished. Abrupt strain-rate changes within one indentation allow determining the strain-rate dependency of hardness at various indentation depths. For probing lower strain-rates and excluding thermal drift influences, long-term creep experiments can be performed by using the dynamic contact stiffness for determining the true contact area. From both procedures hardness and strain-rate, and consequently strain-rate sensitivity and activation volume can be reliably deducted within one indentation, permitting information on the locally acting thermally activated deformation mechanism. This review will first discuss various testing protocols including possible challenges and improvements. Second, it will focus on different examples showing the direct influence of crystal structure and/or microstructure on the underlying deformation behavior in pure and highly alloyed material systems.

Wavelet-based statistical classification of skin images acquired with reflectance confocal microscopy

PubMed Central

Halimi, Abdelghafour; Batatia, Hadj; Le Digabel, Jimmy; Josse, Gwendal; Tourneret, Jean Yves

2017-01-01

Detecting skin lentigo in reflectance confocal microscopy images is an important and challenging problem. This imaging modality has not yet been widely investigated for this problem and there are a few automatic processing techniques. They are mostly based on machine learning approaches and rely on numerous classical image features that lead to high computational costs given the very large resolution of these images. This paper presents a detection method with very low computational complexity that is able to identify the skin depth at which the lentigo can be detected. The proposed method performs multiresolution decomposition of the image obtained at each skin depth. The distribution of image pixels at a given depth can be approximated accurately by a generalized Gaussian distribution whose parameters depend on the decomposition scale, resulting in a very-low-dimension parameter space. SVM classifiers are then investigated to classify the scale parameter of this distribution allowing real-time detection of lentigo. The method is applied to 45 healthy and lentigo patients from a clinical study, where sensitivity of 81.4% and specificity of 83.3% are achieved. Our results show that lentigo is identifiable at depths between 50μm and 60μm, corresponding to the average location of the the dermoepidermal junction. This result is in agreement with the clinical practices that characterize the lentigo by assessing the disorganization of the dermoepidermal junction. PMID:29296480

Global Discontinuity Structure of the Mantle Transition Zone from Finite-Frequency Tomography of SS Precursors

NASA Astrophysics Data System (ADS)

Guo, Z.; Zhou, Y.

2017-12-01

We report global structure of the 410-km and 660-km discontinuities from finite-frequency tomography using frequency-dependent traveltime measurements of SS precursors recorded at the Global Seismological Network (GSN). Finite-frequency sensitivity kernels for discontinuity depth perturbations are calculated in the framework of traveling-wave mode coupling. We parametrize the global discontinuities using a set of spherical triangular grid points and solve the tomographic inverse problem based on singular value decomposition. Our global 410-km and 660-km discontinuity models reveal distinctly different characteristics beneath the oceans and subduction zones. In general, oceanic regions are associated with a thinner mantle transition zone and depth perturbations of the 410-km and 660-km discontinuities are anti-correlated, in agreement with a thermal origin and an overall warm and dry mantle beneath the oceans. The perturbations are not uniform throughout the oceans but show strong small-scale variations, indicating complex processes in the mantle transition zone. In major subduction zones (except for South America where data coverage is sparse), depth perturbations of the 410-km and 660-km discontinuities are correlated, with both the 410-km and the 660-km discontinuities occurring at greater depths. The distributions of the anomalies are consistent with cold stagnant slabs just above the 660-km discontinuity and ascending return flows in a superadiabatic upper mantle.

Chromostereopsis in "virtual reality" adapters with electrically tuneable liquid lens oculars

NASA Astrophysics Data System (ADS)

Ozolinsh, Maris; Muizniece, Kristine; Berzinsh, Janis

2016-10-01

Chromostereopsis can be sight and feel in "Virtual Reality" adapters, that induces the appearance of color dependant depth sense and, finally, combines this sense with the source conceived depth scenario. Present studies are devoted to investigation the induced chromastereopsis when using adapted "Virtual Reality" frame together with mobile devices as smartphones. We did observation of composite visual stimuli presented on the high spatial resolution screen of the mobile phone placed inside a portable "Virtual Reality" adapter. Separated for the left and right eyes stimuli consisted of two areas: a) identical for both eyes color chromostereopsis part, and b) additional conventional color neutral random-dot stereopsis part with a stereodisparity based on the horizontal shift of a random-dot segment in images for the left and right eyes, correspondingly. The observer task was to equalize the depth sense for neutral and colored stimuli areas. Such scheme allows to determine actual observed chromostereopsis disparity value versus eye stimuli color difference. At standard observation conditions for adapter with +2D ocular lenses for mobile red-blue stimuli, the perceptual chromostereopsis depth sensitivity on color difference was linearly approximated with a slope SChS ≈ 2.1[arcmin/(Labcolor difference)] for red-blue pairs. Additional to standard application in adapter the tuneable "Varioptic" liquid lens oculars were incorporated, that allowed stimuli eye magnification, vergence and disparity values control electrically.

Perception of stochastic envelopes by normal-hearing and cochlear-implant listeners

PubMed Central

Gomersall, Philip A.; Turner, Richard E.; Baguley, David M.; Deeks, John M.; Gockel, Hedwig E.; Carlyon, Robert P.

2016-01-01

We assessed auditory sensitivity to three classes of temporal-envelope statistics (modulation depth, modulation rate, and comodulation) that are important for the perception of ‘sound textures’. The textures were generated by a probabilistic model that prescribes the temporal statistics of a selected number of modulation envelopes, superimposed onto noise carriers. Discrimination thresholds were measured for normal-hearing (NH) listeners and users of a MED-EL pulsar cochlear implant (CI), for separate manipulations of the average rate and modulation depth of the envelope in each frequency band of the stimulus, and of the co-modulation between bands. Normal-hearing (NH) listeners' discrimination of envelope rate was similar for baseline modulation rates of 5 and 34 Hz, and much poorer than previously reported for sinusoidally amplitude-modulated sounds. In contrast, discrimination of model parameters that controlled modulation depth was poorer at the lower baseline rate, consistent with the idea that, at the lower rate, subjects get fewer ‘looks’ at the relevant information when comparing stimuli differing in modulation depth. NH listeners could discriminate differences in co-modulation across bands; a multidimensional scaling study revealed that this was likely due to genuine across-frequency processing, rather than within-channel cues. CI users' discrimination performance was worse overall than for NH listeners, but showed a similar dependence on stimulus parameters. PMID:26706708

Latitude Variation of the Subsurface Lunar Temperature: Lunar Prospector Thermal Neutrons

NASA Astrophysics Data System (ADS)

Little, R. C.; Feldman, W. C.; Maurice, S.; Genetay, I.; Lawrence, D. J.; Lawson, S. L.; Gasnault, O.; Barraclough, B. L.; Elphic, R. C.; Prettyman, T. H.; Binder, A. B.

2001-05-01

Planetary thermal neutron fluxes provide a sensitive proxy for mafic and feldspathic terranes, and are also necessary for translating measured gamma-ray line strengths to elemental abundances. Both functions require a model for near surface temperatures and a knowledge of the dependence of thermal neutron flux on temperature. We have explored this dependence for a representative sample of lunar soil compositions and surface temperatures using MCNP. For all soil samples, the neutron density is found to be independent of temperature, in accord with neutron moderation theory. The thermal neutron flux, however, does vary with temperature in a way that depends on D, the ratio of macroscopic absorption to energy-loss cross sections of soil compositions. The weakest dependence is for the largest D (which corresponds to the Apollo 17 high Ti basalt in our soil selection), and the largest dependence is for the lowest D (which corresponds to ferroan anorthosite, [FAN] in our selection). For the lunar model simulated, the depth at which the thermal neutron population is most sensitive to temperature is ~30 g/cm**2. These simulations were compared with the flux of thermal neutrons measured using the Lunar Prospector neutron spectrometer over the lunar highlands using a sub-surface temperature profile that varies with latitude, L, as (Cos L)**0.25. The fit is excellent. The best fitting equatorial temperature is determined to be, Teq=224+/-40 K. This temperature range brackets the average temperature measured below the thermal wave at the equator, Tmeas = 252+/-3K [Langseth and Keihm, 1977]. The present result represents the first measurement of subsurface temperature from orbit using neutrons.

Frequency-Dependent Tidal Triggering of Low Frequency Earthquakes Near Parkfield, California

NASA Astrophysics Data System (ADS)

Xue, L.; Burgmann, R.; Shelly, D. R.

2017-12-01

The effect of small periodic stress perturbations on earthquake generation is not clear, however, the rate of low-frequency earthquakes (LFEs) near Parkfield, California has been found to be strongly correlated with solid earth tides. Laboratory experiments and theoretical analyses show that the period of imposed forcing and source properties affect the sensitivity to triggering and the phase relation of the peak seismicity rate and the periodic stress, but frequency-dependent triggering has not been quantitatively explored in the field. Tidal forcing acts over a wide range of frequencies, therefore the sensitivity to tidal triggering of LFEs provides a good probe to the physical mechanisms affecting earthquake generation. In this study, we consider the tidal triggering of LFEs near Parkfield, California since 2001. We find the LFEs rate is correlated with tidal shear stress, normal stress rate and shear stress rate. The occurrence of LFEs can also be independently modulated by groups of tidal constituents at semi-diurnal, diurnal and fortnightly frequencies. The strength of the response of LFEs to the different tidal constituents varies between LFE families. Each LFE family has an optimal triggering frequency, which does not appear to be depth dependent or systematically related to other known properties. This suggests the period of the applied forcing plays an important role in the triggering process, and the interaction of periods of loading history and source region properties, such as friction, effective normal stress and pore fluid pressure, produces the observed frequency-dependent tidal triggering of LFEs.

A Monte Carlo study of the quality dependence factors of common TLD materials in photon and electron beams.

PubMed

Mobit, P N; Nahum, A E; Mayles, P

1998-08-01

A Monte Carlo simulation of the quality dependence of different TL materials, in the form of discs 3.61 mm in diameter and 0.9 mm thick, in radiotherapy photon beams relative to 60Co gamma-rays has been performed. The beam qualities ranged from 50 kV to 25 MV x-rays. The TL materials were: CaF2, CaSO4, LiF and Li2B4O7. The effects of the dopants on energy deposition in the TL material have also been determined for the highly sensitive LiF:Mg:Cu:P (TLD-100H) and for CaF2:Mn. It was found that there was a significant difference in the quality dependence factor derived from Monte Carlo simulations between LiF and LiF:Mg:Cu:P but not between CaF2 and CaF2:Mn. The quality dependence factors for Li2B4O7 varied from 0.990 +/- 0.008 (1 sd) for 25 MV x-rays to 0.940 +/- 0.009 (1 sd) for 50 kV x-rays relative to 60Co gamma-rays; Monte Carlo simulations were also performed for Li2B4O7 in megavoltage electron beams. For CaF2, the quality dependence factor varied from 0.927 +/- 0.008 (1 sd) for 25 MV x-rays to 10.561 +/- 0.008 (1 sd) for 50 kV x-rays. The figure for CaSO4 ranged from 0.943 +/- 0.008 (1 sd) for 25 MV x-rays to 9.010 +/- 0.008 (1 sd) for 50 kV x-rays. The quality dependence factor for CaF2 increases by up to 5% with depth and by up to 15% with field size for the kilovoltage x-ray beams. For LiF-TLD, however, there was no significant dependence on the field size or depth of irradiation in the kilovoltage energy range.

Sensitivity of the two-dimensional shearless mixing layer to the initial turbulent kinetic energy and integral length scale

NASA Astrophysics Data System (ADS)

Fathali, M.; Deshiri, M. Khoshnami

2016-04-01

The shearless mixing layer is generated from the interaction of two homogeneous isotropic turbulence (HIT) fields with different integral scales ℓ1 and ℓ2 and different turbulent kinetic energies E1 and E2. In this study, the sensitivity of temporal evolutions of two-dimensional, incompressible shearless mixing layers to the parametric variations of ℓ1/ℓ2 and E1/E2 is investigated. The sensitivity methodology is based on the nonintrusive approach; using direct numerical simulation and generalized polynomial chaos expansion. The analysis is carried out at Reℓ 1=90 for the high-energy HIT region and different integral length scale ratios 1 /4 ≤ℓ1/ℓ2≤4 and turbulent kinetic energy ratios 1 ≤E1/E2≤30 . It is found that the most influential parameter on the variability of the mixing layer evolution is the turbulent kinetic energy while variations of the integral length scale show a negligible influence on the flow field variability. A significant level of anisotropy and intermittency is observed in both large and small scales. In particular, it is found that large scales have higher levels of intermittency and sensitivity to the variations of ℓ1/ℓ2 and E1/E2 compared to the small scales. Reconstructed response surfaces of the flow field intermittency and the turbulent penetration depth show monotonic dependence on ℓ1/ℓ2 and E1/E2 . The mixing layer growth rate and the mixing efficiency both show sensitive dependence on the initial condition parameters. However, the probability density function of these quantities shows relatively small solution variations in response to the variations of the initial condition parameters.

Unexpected structural and magnetic depth dependence of YIG thin films

NASA Astrophysics Data System (ADS)

Cooper, J. F. K.; Kinane, C. J.; Langridge, S.; Ali, M.; Hickey, B. J.; Niizeki, T.; Uchida, K.; Saitoh, E.; Ambaye, H.; Glavic, A.

2017-09-01

We report measurements on yttrium iron garnet (YIG) thin films grown on both gadolinium gallium garnet (GGG) and yttrium aluminum garnet (YAG) substrates, with and without thin Pt top layers. We provide three principal results: the observation of an interfacial region at the Pt/YIG interface, we place a limit on the induced magnetism of the Pt layer, and confirm the existence of an interfacial layer at the GGG/YIG interface. Polarized neutron reflectometry (PNR) was used to give depth dependence of both the structure and magnetism of these structures. We find that a thin film of YIG on GGG is best described by three distinct layers: an interfacial layer near the GGG, around 5 nm thick and nonmagnetic, a magnetic "bulk" phase, and a nonmagnetic and compositionally distinct thin layer near the surface. We theorize that the bottom layer, which is independent of the film thickness, is caused by Gd diffusion. The top layer is likely to be extremely important in inverse spin Hall effect measurements, and is most likely Y2O3 or very similar. Magnetic sensitivity in the PNR to any induced moment in the Pt is increased by the existence of the Y2O3 layer; any moment is found to be less than 0.02 μB/atom .

The feasibility assessment of radiation dose of movement 3D NIPAM gel by magnetic resonance imaging

NASA Astrophysics Data System (ADS)

Hsieh, Chih-Ming; Leung, Joseph Hang; Ng, Yu-Bun; Cheng, Chih-Wu; Sun, Jung-Chang; Lin, Ping-Chin; Hsieh, Bor-Tsung

2015-11-01

NIPAM dosimeter is widely accepted and recommended for its 3D distribution and accuracy in dose absorption. Up to the moment, most research works on dose measurement are based on a fixed irradiation target without the consideration of the effect from physiological motion. We present a study to construct a respiratory motion simulating patient anatomical and dosimetry model for the study of dosimetic effect of organ motion. The dose on fixed and motion targets was measured by MRI after a dose adminstration of 1, 2, 5, 8, and 10 Gy from linear accelerator. Comparison of two situations is made. The average sensitivity of fixed NIPAM was 0.1356 s-1/Gy with linearity R2=0.998. The average sensitivity of movement NIPAM was 0.1366 s-1/Gy with linearity R2=0.998 both having only 0.001 of the sensitivity difference. The difference between the two based on dose rate dependency, position and depth was not significant. There was thus no apparent impact on NIPAM dosimeter from physiological motion. The high sensitivity, linearity and stability of NIPAM dosimeter proved to be an ideal apparatus in the dose measurement in these circumstances.

Dynamics of 3D view invariance in monkey inferotemporal cortex

PubMed Central

Ratan Murty, N. Apurva

2015-01-01

Rotations in depth are challenging for object vision because features can appear, disappear, be stretched or compressed. Yet we easily recognize objects across views. Are the underlying representations view invariant or dependent? This question has been intensely debated in human vision, but the neuronal representations remain poorly understood. Here, we show that for naturalistic objects, neurons in the monkey inferotemporal (IT) cortex undergo a dynamic transition in time, whereby they are initially sensitive to viewpoint and later encode view-invariant object identity. This transition depended on two aspects of object structure: it was strongest when objects foreshortened strongly across views and were similar to each other. View invariance in IT neurons was present even when objects were reduced to silhouettes, suggesting that it can arise through similarity between external contours of objects across views. Our results elucidate the viewpoint debate by showing that view invariance arises dynamically in IT neurons out of a representation that is initially view dependent. PMID:25609108

Sensitivity of two salamander (Ambystoma) species to ultraviolet radiation

USGS Publications Warehouse

Calfee, R.D.; Bridges, C.M.; Little, E.E.

2006-01-01

Increased ultraviolet-B (UV-B) radiation reaching the Earth's surface has been implicated in amphibian declines. Recent studies have shown that many amphibian species have differences in sensitivity depending on developmental stage. Embryos and larvae of Ambystoma maculatum (Spotted Salamander) and larvae of Ambystoma talpoideum (Mole Salamander) were exposed to five simulated UV-B treatments in controlled laboratory experiments to determine the relative sensitivity of different lifestages. Hatching success of the embryos exceeded 95% in all treatments; however, the larvae of both species exhibited greater sensitivity to UV-B exposure. Older larvae of A. maculatum that were not exposed to UV-B as embryos were more sensitive than larvae that had hatched during exposure to UV-B. Growth of surviving larvae of A. maculatum was significantly reduced as UV-B intensity increased, whereas growth of A. talpoideum was unaffected. These results were compared to ambient UV-B conditions in natural environments. It appears that the embryo stage is relatively unaffected by UV-B levels observed in natural habitats, probably because of protection from vegetation, organic matter in the water column, oviposition depth, and egg jelly. The larval stage of these species may be at greater risk, particularly if there is an increase in UV-B radiation exposure caused by increases in water clarity and/or decreases in dissolved organic carbon.

Adaptation of a canopy reflectance model for sub-aqueous vegetation: Definition and sensitivity analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Plummer, S.E.; Malthus, T.J.; Clark, C.D.

1997-06-01

Seagrass meadows are a key component of shallow coastal environments acting as a food resource, nursery and contributing to water oxygenation. Given the importance of these meadows and their susceptibility to anthropogenic disturbance, it is vital that the extent and growth of seagrass is monitored. Remote sensing techniques offer the potential to determine biophysical characteristics of seagrass. This paper presents observations on the development and testing of an invertible model of seagrass canopy reflectance. The model is an adaptation of a land surface reflectance model to incorporate the effects of attenuation and scattering of incoming radiative flux in water. Sensitivitymore » analysis reveals that the subsurface reflectance is strongly dependent on the water depth, vegetation amount, the parameter which we wish to determine, and turbidity respectively. By contrast the chlorophyll concentration of water and gelbstoff are relatively unimportant. Water depth and turbidity need to be known or accommodated in any inversion as free parameters.« less

Lognormal field size distributions as a consequence of economic truncation

USGS Publications Warehouse

Attanasi, E.D.; Drew, L.J.

1985-01-01

The assumption of lognormal (parent) field size distributions has for a long time been applied to resource appraisal and evaluation of exploration strategy by the petroleum industry. However, frequency distributions estimated with observed data and used to justify this hypotheses are conditional. Examination of various observed field size distributions across basins and over time shows that such distributions should be regarded as the end result of an economic filtering process. Commercial discoveries depend on oil and gas prices and field development costs. Some new fields are eliminated due to location, depths, or water depths. This filtering process is called economic truncation. Economic truncation may occur when predictions of a discovery process are passed through an economic appraisal model. We demonstrate that (1) economic resource appraisals, (2) forecasts of levels of petroleum industry activity, and (3) expected benefits of developing and implementing cost reducing technology are sensitive to assumptions made about the nature of that portion of (parent) field size distribution subject to economic truncation. ?? 1985 Plenum Publishing Corporation.

Modeling of porosity loss during compaction and cementation of sandstones

NASA Astrophysics Data System (ADS)

Lemée, Claire; Guéguen, Yves

1996-10-01

Irreversible inelastic processes are responsible for mechanical and chemical compaction of sedimentary rocks at the time of burying. Our purpose is to describe the inelastic response of the rock at large time scales. In order to do this, we build a model that describes how porosity progressively decreases at depth. We use a previous geometrical model for the compaction process of a sandstone by grain interpenetration that is restricted to the case of mass conservation. In addition, we introduce a compaction equilibrium concept. Solid grains can support stresses up to a critical effective stress, σc, before plastic flow occurs. This critical stress depends on temperature and is derived from the pressure-solution deformation law. Pressure solution is the plastic deformation mechanism implemented during compaction. Our model predicts a porosity destruction at a depth of about 3 km. This model has the property to define a range of compaction curves. We investigate the sensitivity of the model to the main input parameters: liquid film thickness, grain size, temperature gradient, and activation energy.

Can lagrangian models reproduce the migration time of European eel obtained from otolith analysis?

NASA Astrophysics Data System (ADS)

Rodríguez-Díaz, L.; Gómez-Gesteira, M.

2017-12-01

European eel can be found at the Bay of Biscay after a long migration across the Atlantic. The duration of migration, which takes place at larval stage, is of primary importance to understand eel ecology and, hence, its survival. This duration is still a controversial matter since it can range from 7 months to > 4 years depending on the method to estimate duration. The minimum migration duration estimated from our lagrangian model is similar to the duration obtained from the microstructure of eel otoliths, which is typically on the order of 7-9 months. The lagrangian model showed to be sensitive to different conditions like spatial and time resolution, release depth, release area and initial distribution. In general, migration showed to be faster when decreasing the depth and increasing the resolution of the model. In average, the fastest migration was obtained when only advective horizontal movement was considered. However, faster migration was even obtained in some cases when locally oriented random migration was taken into account.

A dynamic optimization model of the diel vertical distribution of a pelagic planktivorous fish

NASA Astrophysics Data System (ADS)

Rosland, Rune; Giske, Jarl

A stochastic dynamic optimization model for the diel depth distribution of juveniles and adults of the mesopelagic planktivore Maurolicus muelleri (Gmelin) is developed and used for a winter situation. Observations from Masfjorden, western Norway, reveal differences in vertical distribution, growth and mortality between juveniles and adults in January. Juveniles stay within the upper 100m with high feeding rates, while adults stay within the 100-150m zone with very low feeding rates during the diel cycle. The difference in depth profitability is assumed to be caused by age-dependent processes, and are calculated from a mechanistic model for visual feeding. The environment is described as a set of habitats represented by discrete depth intervals along the vertical axis, differing with respect to light intensity, food abundance, predation risk and temperature. The short time interval (24h) allows fitness to be linearly related to growth (feeding), assuming that growth increases the future reproductive output of the fish. Optimal depth position is calculated from balancing feeding opportunity against mortality risk, where the fitness reward gained by feeding is weighted against the danger of being killed by a predator. A basic run is established, and the model is validated by comparing predictions and observations. The sensitivity for different parameter values is also tested. The modelled vertical distributions and feeding patterns of juvenile and adult fish correspond well with the observations, and the assumption of age differences in mortality-feeding trade-offs seems adequate to explain the different depth profitability of the two age groups. The results indicate a preference for crepuscular feeding activity of the juveniles, and the vertical distribution of zooplankton seems to be the most important environmental factor regulating the adult depth position during the winter months in Masfjorden.

Influence of variable water depth and turbidity on microalgae production in a shallow estuarine lake system - A modelling study

NASA Astrophysics Data System (ADS)

Tirok, Katrin; Scharler, Ursula M.

2014-06-01

Strongly varying water levels and turbidities are typical characteristics of the large shallow estuarine lake system of St. Lucia, one of the largest on the African continent. This theoretical study investigated the combined effects of variable water depth and turbidity on seasonal pelagic and benthic microalgae production using a mathematical model, in order to ascertain productivity levels during variable and extreme conditions. Simulated pelagic and benthic net production varied between 0.3 and 180 g C m-2 year-1 and 0 and 220 g C m-2 year-1, respectively, dependent on depth, turbidity, and variability in turbidity. Although not surprising production and biomass decreased with increasing turbidity and depth. A high variability in turbidity, i.e. an alteration of calm and windy days, could reduce or enhance the seasonal pelagic and benthic production by more than 30% compared to a low variability. The day-to-day variability in wind-induced turbidity therefore influences production in the long term. On the other hand, varying water depth within a year did not significantly influence the seasonal production for turbidities representative of Lake St. Lucia. Reduced lake area and volume as observed during dry periods in Lake St. Lucia did not reduce primary production of the entire system since desiccation resulted in lower water depth and thus increased light availability. This agrees with field observations suggesting little light limitation and high areal microalgal biomass during a period with below average rainfall (2005-2011). Thus, microalgae potentially fulfil their function in the lake food-web even under extreme drought conditions. We believe that these results are of general interest to shallow aquatic ecosystems that are sensitive to drought periods due to either human or natural causes.

Three-dimensional optimization and sensitivity analysis of dental implant thread parameters using finite element analysis.

PubMed

Geramizadeh, Maryam; Katoozian, Hamidreza; Amid, Reza; Kadkhodazadeh, Mahdi

2018-04-01

This study aimed to optimize the thread depth and pitch of a recently designed dental implant to provide uniform stress distribution by means of a response surface optimization method available in finite element (FE) software. The sensitivity of simulation to different mechanical parameters was also evaluated. A three-dimensional model of a tapered dental implant with micro-threads in the upper area and V-shaped threads in the rest of the body was modeled and analyzed using finite element analysis (FEA). An axial load of 100 N was applied to the top of the implants. The model was optimized for thread depth and pitch to determine the optimal stress distribution. In this analysis, micro-threads had 0.25 to 0.3 mm depth and 0.27 to 0.33 mm pitch, and V-shaped threads had 0.405 to 0.495 mm depth and 0.66 to 0.8 mm pitch. The optimized depth and pitch were 0.307 and 0.286 mm for micro-threads and 0.405 and 0.808 mm for V-shaped threads, respectively. In this design, the most effective parameters on stress distribution were the depth and pitch of the micro-threads based on sensitivity analysis results. Based on the results of this study, the optimal implant design has micro-threads with 0.307 and 0.286 mm depth and pitch, respectively, in the upper area and V-shaped threads with 0.405 and 0.808 mm depth and pitch in the rest of the body. These results indicate that micro-thread parameters have a greater effect on stress and strain values.

The effect of clouds on the earth's radiation budget

NASA Technical Reports Server (NTRS)

Ziskin, Daniel; Strobel, Darrell F.

1991-01-01

The radiative fluxes from the Earth Radiation Budget Experiment (ERBE) and the cloud properties from the International Satellite Cloud Climatology Project (ISCCP) over Indonesia for the months of June and July of 1985 and 1986 were analyzed to determine the cloud sensitivity coefficients. The method involved a linear least squares regression between co-incident flux and cloud coverage measurements. The calculated slope is identified as the cloud sensitivity. It was found that the correlations between the total cloud fraction and radiation parameters were modest. However, correlations between cloud fraction and IR flux were improved by separating clouds by height. Likewise, correlations between the visible flux and cloud fractions were improved by distinguishing clouds based on optical depth. Calculating correlations between the net fluxes and either height or optical depth segregated cloud fractions were somewhat improved. When clouds were classified in terms of their height and optical depth, correlations among all the radiation components were improved. Mean cloud sensitivities based on the regression of radiative fluxes against height and optical depth separated cloud types are presented. Results are compared to a one-dimensional radiation model with a simple cloud parameterization scheme.

Depth-resolved birefringence and differential optical axis orientation measurements with fiber-based polarization-sensitive optical coherence tomography.

PubMed

Guo, Shuguang; Zhang, Jun; Wang, Lei; Nelson, J Stuart; Chen, Zhongping

2004-09-01

Conventional polarization-sensitive optical coherence tomography (PS-OCT) can provide depth-resolved Stokes parameter measurements of light reflected from turbid media. A new algorithm that takes into account changes in the optical axis is introduced to provide depth-resolved birefringence and differential optical axis orientation images by use of fiber-based PS-OCT. Quaternion, a convenient mathematical tool, is used to represent an optical element and simplify the algorithm. Experimental results with beef tendon and rabbit tendon and muscle show that this technique has promising potential for imaging the birefringent structure of multiple-layer samples with varying optical axes.

Anatomic variation of depth-dependent mechanical properties in neonatal bovine articular cartilage.

PubMed

Silverberg, Jesse L; Dillavou, Sam; Bonassar, Lawrence; Cohen, Itai

2013-05-01

Articular cartilage has well known depth-dependent structure and has recently been shown to have similarly non-uniform depth-dependent mechanical properties. Here, we study anatomic variation of the depth-dependent shear modulus and energy dissipation rate in neonatal bovine knees. The regions we specifically focus on are the patellofemoral groove, trochlea, femoral condyle, and tibial plateau. In every sample, we find a highly compliant region within the first 500 µm of tissue measured from the articular surface, where the local shear modulus is reduced by up to two orders of magnitude. Comparing measurements taken from different anatomic sites, we find statistically significant differences localized within the first 50 µm. Histological images reveal these anatomic variations are associated with differences in collagen density and fiber organization. Copyright © 2012 Orthopaedic Research Society.

Effects of coil orientation on the electric field induced by TMS over the hand motor area

NASA Astrophysics Data System (ADS)

Laakso, Ilkka; Hirata, Akimasa; Ugawa, Yoshikazu

2014-01-01

Responses elicited by transcranial magnetic stimulation (TMS) over the hand motor area depend on the position and orientation of the stimulating coil. In this work, we computationally investigate the induced electric field for multiple coil orientations and locations in order to determine which parts of the brain are affected and how the sensitivity of motor cortical activation depends on the direction of the electric field. The finite element method is used for calculating the electric field induced by TMS in two individual anatomical models of the head and brain. The orientation of the coil affects both the strength and depth of penetration of the electric field, and the field strongly depends on the direction of the sulcus, where the target neurons are located. The coil position that gives the strongest electric field in the target cortical region may deviate from the closest scalp location by a distance on the order of 1 cm. Together with previous experimental data, the results support the hypothesis that the cortex is most sensitive to fields oriented perpendicular to the cortical layers, while it is relatively insensitive to fields parallel to them. This has important implications for targeting of TMS. To determine the most effective coil position and orientation, it is essential to consider both biological (the direction of the targeted axons) and physical factors (the strength and direction of the electric field).

Velocity gradients and reservoir volumes lessons in computational sensitivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, P.W.

1995-12-31

The sensitivity of reservoir volume estimation from depth converted geophysical time maps to the velocity gradients employed is investigated through a simple model study. The computed volumes are disconcertingly sensitive to gradients, both horizontal and vertical. The need for an accurate method of time to depth conversion is well demonstrated by the model study in which errors in velocity are magnified 40 fold in the computation of the volume. Thus if +/- 10% accuracy in the volume is desired, we must be able to estimate the velocity at the water contact with 0.25% accuracy. Put another way, if the velocitymore » is 8000 feet per second at the well then we have only +/- 20 feet per second leeway in estimating the velocity at the water contact. Very moderate horizontal and vertical gradients would typically indicate a velocity change of a few hundred feet per second if they are in the same direction. Clearly the interpreter needs to by very careful. A methodology is demonstrated which takes into account all the information that is available, velocities, tops, depositional and lithologic spatial patterns, and common sense. It is assumed that through appropriate use of check shot and other time-depth information, that the interpreter has correctly tied the reflection picks to the well tops. Such ties are ordinarily too soft for direct time-depth conversion to give adequate depth ties. The proposed method uses a common compaction law as its basis and incorporates time picks, tops and stratigraphic maps into the depth conversion process. The resulting depth map ties the known well tops in an optimum fashion.« less

Sensitivity of an Antarctic Ice Sheet Model to Sub-Ice-Shelf Melting

NASA Astrophysics Data System (ADS)

Lipscomb, W. H.; Leguy, G.; Urban, N. M.; Berdahl, M.

2017-12-01

Theory and observations suggest that marine-based sectors of the Antarctic ice sheet could retreat rapidly under ocean warming and increased melting beneath ice shelves. Numerical models of marine ice sheets vary widely in sensitivity, depending on grid resolution and the parameterization of key processes (e.g., calving and hydrofracture). Here we study the sensitivity of the Antarctic ice sheet to ocean warming and sub-shelf melting in standalone simulations of the Community Ice Sheet Model (CISM). Melt rates either are prescribed based on observations and high-resolution ocean model output, or are derived from a plume model forced by idealized ocean temperature profiles. In CISM, we vary the model resolution (between 1 and 8 km), Stokes approximation (shallow-shelf, depth-integrated higher-order, or 3D higher-order) and calving scheme to create an ensemble of plausible responses to sub-shelf melting. This work supports a broader goal of building statistical and reduced models that can translate large-scale Earth-system model projections to changes in Antarctic ocean temperatures and ice sheet discharge, thus better quantifying uncertainty in Antarctic-sourced sea-level rise.

Electronic and Interfacial Properties of PD/6H-SiC Schottky Diode Gas Sensors

NASA Technical Reports Server (NTRS)

Chen, Liang-Yu; Hunter, Gary W.; Neudeck, Philip G.; Bansal, Gaurav; Petit, Jeremy B.; Knight, Dak; Liu, Chung-Chiun; Wu, Qinghai

1996-01-01

Pd/SiC Schottky diodes detect hydrogen and hydrocarbons with high sensitivity. Variation of the diode temperature from 100 C to 200 C shows that the diode sensitivity to propylene is temperature dependent. Long-term heat treating at 425 C up to 140 hours is carried out to determine the effect of extended heat treating on the diode properties and gas sensitivity. The heat treating significantly affects the diode's capacitive characteristics, but the diode's current carrying characteristics are much more stable with a large response to hydrogen. Scanning Electron Microscopy and X-ray Spectrometry studies of the Pd surface after the heating show cluster formation and background regions with grain structure observed in both regions. The Pd and Si concentrations vary between grains. Auger Electron Spectroscopy depth profiles revealed that the heat treating promoted interdiffusion and reaction between the Pd and SiC dw broadened the interface region. This work shows that Pd/SiC Schottky diodes have significant potential as high temperature gas sensors, but stabilization of the structure is necessary to insure their repeatability in long-term, high temperature applications.

Calculating the sensitivity and robustness of binding free energy calculations to force field parameters

PubMed Central

Rocklin, Gabriel J.; Mobley, David L.; Dill, Ken A.

2013-01-01

Binding free energy calculations offer a thermodynamically rigorous method to compute protein-ligand binding, and they depend on empirical force fields with hundreds of parameters. We examined the sensitivity of computed binding free energies to the ligand’s electrostatic and van der Waals parameters. Dielectric screening and cancellation of effects between ligand-protein and ligand-solvent interactions reduce the parameter sensitivity of binding affinity by 65%, compared with interaction strengths computed in the gas-phase. However, multiple changes to parameters combine additively on average, which can lead to large changes in overall affinity from many small changes to parameters. Using these results, we estimate that random, uncorrelated errors in force field nonbonded parameters must be smaller than 0.02 e per charge, 0.06 Å per radius, and 0.01 kcal/mol per well depth in order to obtain 68% (one standard deviation) confidence that a computed affinity for a moderately-sized lead compound will fall within 1 kcal/mol of the true affinity, if these are the only sources of error considered. PMID:24015114

Sensitivity analysis for dose deposition in radiotherapy via a Fokker–Planck model

DOE PAGES

Barnard, Richard C.; Frank, Martin; Krycki, Kai

2016-02-09

In this paper, we study the sensitivities of electron dose calculations with respect to stopping power and transport coefficients. We focus on the application to radiotherapy simulations. We use a Fokker–Planck approximation to the Boltzmann transport equation. Equations for the sensitivities are derived by the adjoint method. The Fokker–Planck equation and its adjoint are solved numerically in slab geometry using the spherical harmonics expansion (P N) and an Harten-Lax-van Leer finite volume method. Our method is verified by comparison to finite difference approximations of the sensitivities. Finally, we present numerical results of the sensitivities for the normalized average dose depositionmore » depth with respect to the stopping power and the transport coefficients, demonstrating the increase in relative sensitivities as beam energy decreases. In conclusion, this in turn gives estimates on the uncertainty in the normalized average deposition depth, which we present.« less

Extending 'Deep Blue' aerosol retrieval coverage to cases of absorbing aerosols above clouds: sensitivity analysis and first case studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sayer, Andrew M.; Hsu, C.; Bettenhausen, Corey

Cases of absorbing aerosols above clouds (AAC), such as smoke or mineral dust, are omitted from most routinely-processed space-based aerosol optical depth (AOD) data products, including those from the Moderate Resolution Imaging Spectroradiometer (MODIS). This study presents a sensitivity analysis and preliminary algorithm to retrieve above-cloud AOD and liquid cloud optical depth (COD) for AAC cases from MODIS or similar

DOI Determination by Rise Time Discrimination in Single-Ended Readout for TOF PET Imaging

PubMed Central

Wiener, R.I.; Surti, S.; Karp, J.S.

2013-01-01

Clinical TOF PET systems achieve detection efficiency using thick crystals, typically of thickness 2–3cm. The resulting dispersion in interaction depths degrades spatial resolution for increasing radial positions due to parallax error. Furthermore, interaction depth dispersion results in time pickoff dispersion and thus in degraded timing resolution, and is therefore of added concern in TOF scanners. Using fast signal digitization, we characterize the timing performance, pulse shape and light output of LaBr3:Ce, CeBr3 and LYSO. Coincidence timing resolution is shown to degrade by ~50ps/cm for scintillator pixels of constant cross section and increasing length. By controlling irradiation depth in a scintillator pixel, we show that DOI-dependence of time pickoff is a significant factor in the loss of timing performance in thick detectors. Using the correlated DOI-dependence of time pickoff and charge collection, we apply a charge-based correction to the time pickoff, obtaining improved coincidence timing resolution of <200ps for a uniform 4×4×30mm3 LaBr3 pixel. In order to obtain both DOI identification and improved timing resolution, we design a two layer LaBr3[5%Ce]/LaBr3[30%Ce] detector of total size 4×4×30mm3, exploiting the dependence of scintillator rise time on [Ce] in LaBr3:Ce. Using signal rise time to determine interaction layer, excellent interaction layer discrimination is achieved, while maintaining coincidence timing resolution of <250ps and energy resolution <7% using a R4998 PMT. Excellent layer separation and timing performance is measured with several other commercially-available TOF photodetectors, demonstrating the practicality of this design. These results indicate the feasibility of rise time discrimination as a technique for measuring event DOI while maintaining sensitivity, timing and energy performance, in a well-known detector architecture. PMID:24403611

DOI Determination by Rise Time Discrimination in Single-Ended Readout for TOF PET Imaging.

PubMed

Wiener, R I; Surti, S; Karp, J S

2013-06-01

Clinical TOF PET systems achieve detection efficiency using thick crystals, typically of thickness 2-3cm. The resulting dispersion in interaction depths degrades spatial resolution for increasing radial positions due to parallax error. Furthermore, interaction depth dispersion results in time pickoff dispersion and thus in degraded timing resolution, and is therefore of added concern in TOF scanners. Using fast signal digitization, we characterize the timing performance, pulse shape and light output of LaBr 3 :Ce, CeBr 3 and LYSO. Coincidence timing resolution is shown to degrade by ~50ps/cm for scintillator pixels of constant cross section and increasing length. By controlling irradiation depth in a scintillator pixel, we show that DOI-dependence of time pickoff is a significant factor in the loss of timing performance in thick detectors. Using the correlated DOI-dependence of time pickoff and charge collection, we apply a charge-based correction to the time pickoff, obtaining improved coincidence timing resolution of <200ps for a uniform 4×4×30mm 3 LaBr 3 pixel. In order to obtain both DOI identification and improved timing resolution, we design a two layer LaBr 3 [5%Ce]/LaBr 3 [30%Ce] detector of total size 4×4×30mm 3 , exploiting the dependence of scintillator rise time on [Ce] in LaBr 3 :Ce. Using signal rise time to determine interaction layer, excellent interaction layer discrimination is achieved, while maintaining coincidence timing resolution of <250ps and energy resolution <7% using a R4998 PMT. Excellent layer separation and timing performance is measured with several other commercially-available TOF photodetectors, demonstrating the practicality of this design. These results indicate the feasibility of rise time discrimination as a technique for measuring event DOI while maintaining sensitivity, timing and energy performance, in a well-known detector architecture.

Two-level magnetovariational measurements for the determination of underground resistivity distributions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patella, D.; Siniscalchi, A.

1994-07-01

The authors investigate, from a theoretical point of view, the possibility of performing marine two-level magnetovariational measurements. An apparent resistivity function is defined and calculated after solving the differential equation governing the behavior of the natural magnetic field variations inside a one-dimensional earth. In order to generalize the problem, a frequency-dependent resistivity is assumed to characterize the layers and the distortions caused by the polarization effects are carefully analyzed. The computation of three-layer amplitude and phase diagrams for the apparent resistivity function shows that, in the case of an intermediate polarizable layer, sandwiched between a non-dispersive overburden and substratum, themore » H-type sequence results are the most affected by the dispersion phenomenon as it occurs in magnetotellurics. Finally they consider the problem of the sensitivity of the method, since, in practice, it requires top and bottom sensors separated by a vertical finite distance. It is found that in the higher-frequency range, due to the strong attenuation of the relative components of the field, the depth of the bottom sensor must be small enough to guarantee detectable signals, well above the full-scale resolution of the acquisition system. Conversely, in the lower-frequency range such a depth must be large enough to allow the difference between the top and bottom signals to be above the same recording sensitivity threshold.« less

Effects of pressure, cold and gloves on hand skin temperature and manual performance of divers.

PubMed

Zander, Joanna; Morrison, James

2008-09-01

Cold water immersion and protective gloves are associated with decreased manual performance. Although neoprene gloves slow hand cooling, there is little information on whether they provide sufficient protection when diving in cold water. Nine divers wearing three-fingered neoprene gloves and dry suits were immersed in water at 25 and 4 degrees C, at depths of 0.4 msw (101 kPa altitude adjusted) and 40 msw (497 kPa) in a hyperbaric chamber. Skin temperatures were measured at the fingers, hand, forearm, chest and head. Grip strength, tactile sensitivity and manual dexterity were measured at three time intervals. There was an exponential decay in finger and back of hand skin temperatures with exposure time in 4 degrees C water. Finger and back of hand skin temperatures were lower at 40 msw than at 0.4 msw (P < 0.05). There was no effect of pressure or temperature on grip strength. Tactile sensitivity decreased linearly with finger skin temperature at both pressures. Manual dexterity was not affected by finger skin temperature at 0.4 msw, but decreased with fall in finger skin temperature at 40 msw. Results show that neoprene gloves do not provide adequate thermal protection in 4 degrees C water and that impairment of manual performance is dependent on the type of task, depth and exposure time.

Single-Shot Laser Ablation Split-Stream (SS-LASS) Analysis Depth Profiling

NASA Astrophysics Data System (ADS)

Kylander-Clark, A. R.; Stearns, M. A.; Viete, D. R.; Cottle, J. M.; Hacker, B. R.

2014-12-01

Laser ablation depth profiling of geochronometers—such as zircon, monazite, titanite and rutile—has become popular in recent years as a tool to both determine date vs. depth or trace-element (TE) composition vs. depth; the former allows the dating of thin rims and, potentially, inversion of Pb-loss profiles for thermal histories, whereas the latter can yield insight into changes in PTX or mineral parageneses and inversion of trace-element profiles for thermal histories. In this study, we combine both techniques, enabling simultaneous acquisition of U-Th/Pb isotopic ratios and trace-element compositions, by joining a 193 nm excimer laser to a multi-collector ICP-MS and single-collector ICP-MS. The simultaneous acquisition allows direct shot-by-shot linkage between time and petrology, expanding our ability to understand the evolution of complex geologic systems. We construct each depth profile by capturing the analyte with a succession of individual laser pulses (each ~100 nm deep) . This has two main advantages over a typical time-dependent analysis of a multi-shot routine composed of tens to hundreds of shots and a several μm deep hole. 1) The reference material is analyzed between each shot for a more-accurate standardization of each aliquot of ablated material. 2) There is no mixing of material ablated from successive laser pulses during transmission to the ICP. The method is limited by count rate, which depends on spot size, excavation rate, instrument sensitivity, etc., and, for single-collector ICP, the switching time, which limits the number of elements that can be analyzed and their total counts. We explore the latter theoretically and experimentally to provide insight on both the ideal number of elements to measure and the dwell time in any given sample. Examples of the utility of SS-LASS include the comparison of apparent Pb loss to diffusion profiles of trace elements in rims of metamorphic rutile and titanite, as well as the determination of the timing and petrologic conditions of thin zircon rims in metamorphic rocks.

Aerosol optical depth determination in the UV using a four-channel precision filter radiometer

NASA Astrophysics Data System (ADS)

Carlund, Thomas; Kouremeti, Natalia; Kazadzis, Stelios; Gröbner, Julian

2017-03-01

The determination of aerosol properties, especially the aerosol optical depth (AOD) in the ultraviolet (UV) wavelength region, is of great importance for understanding the climatological variability of UV radiation. However, operational retrievals of AOD at the biologically most harmful wavelengths in the UVB are currently only made at very few places. This paper reports on the UVPFR (UV precision filter radiometer) sunphotometer, a stable and robust instrument that can be used for AOD retrievals at four UV wavelengths. Instrument characteristics and results of Langley calibrations at a high-altitude site were presented. It was shown that due to the relatively wide spectral response functions of the UVPFR, the calibration constants (V0) derived from Langley plot calibrations underestimate the true extraterrestrial signals. Accordingly, correction factors were introduced. In addition, the instrument's spectral response functions also result in an apparent air-mass-dependent decrease in ozone optical depth used in the AOD determinations. An adjusted formula for the calculation of AOD, with a correction term dependent on total column ozone amount and ozone air mass, was therefore introduced. Langley calibrations performed 13-14 months apart resulted in sensitivity changes of ≤ 1.1 %, indicating good instrument stability. Comparison with a high-accuracy standard precision filter radiometer, measuring AOD at 368-862 nm wavelengths, showed consistent results. Also, very good agreement was achieved by comparing the UVPFR with AOD at UVB wavelengths derived with a Brewer spectrophotometer, which was calibrated against the UVPFR at an earlier date. Mainly due to non-instrumental uncertainties connected with ozone optical depth, the total uncertainty of AOD in the UVB is higher than that reported from AOD instruments measuring in UVA and visible ranges. However, the precision can be high among instruments using harmonized algorithms for ozone and Rayleigh optical depth as well as for air mass terms. For 4 months of comparison measurements with the UVPFR and a Brewer, the root mean squared AOD differences were found < 0.01 at all the 306-320 nm Brewer wavelengths.

Sialic acids regulate microvessel permeability, revealed by novel in vivo studies of endothelial glycocalyx structure and function

PubMed Central

Betteridge, Kai B.; Arkill, Kenton P.; Neal, Christopher R.; Harper, Steven J.; Foster, Rebecca R.; Satchell, Simon C.; Bates, David O.

2017-01-01

Key points We have developed novel techniques for paired, direct, real‐time in vivo quantification of endothelial glycocalyx structure and associated microvessel permeability.Commonly used imaging and analysis techniques yield measurements of endothelial glycocalyx depth that vary by over an order of magnitude within the same vessel.The anatomical distance between maximal glycocalyx label and maximal endothelial cell plasma membrane label provides the most sensitive and reliable measure of endothelial glycocalyx depth.Sialic acid residues of the endothelial glycocalyx regulate glycocalyx structure and microvessel permeability to both water and albumin. Abstract The endothelial glycocalyx forms a continuous coat over the luminal surface of all vessels, and regulates multiple vascular functions. The contribution of individual components of the endothelial glycocalyx to one critical vascular function, microvascular permeability, remains unclear. We developed novel, real‐time, paired methodologies to study the contribution of sialic acids within the endothelial glycocalyx to the structural and functional permeability properties of the same microvessel in vivo. Single perfused rat mesenteric microvessels were perfused with fluorescent endothelial cell membrane and glycocalyx labels, and imaged with confocal microscopy. A broad range of glycocalyx depth measurements (0.17–3.02 μm) were obtained with different labels, imaging techniques and analysis methods. The distance between peak cell membrane and peak glycocalyx label provided the most reliable measure of endothelial glycocalyx anatomy, correlating with paired, numerically smaller values of endothelial glycocalyx depth (0.078 ± 0.016 μm) from electron micrographs of the same portion of the same vessel. Disruption of sialic acid residues within the endothelial glycocalyx using neuraminidase perfusion decreased endothelial glycocalyx depth and increased apparent solute permeability to albumin in the same vessels in a time‐dependent manner, with changes in all three true vessel wall permeability coefficients (hydraulic conductivity, reflection coefficient and diffusive solute permeability). These novel technologies expand the range of techniques that permit direct studies of the structure of the endothelial glycocalyx and dependent microvascular functions in vivo, and demonstrate that sialic acid residues within the endothelial glycocalyx are critical regulators of microvascular permeability to both water and albumin. PMID:28524373

[Comparative analysis of light sensitivity, depth and motion perception in animals and humans].

PubMed

Schaeffel, F

2017-11-01

This study examined how humans perform regarding light sensitivity, depth perception and motion vision in comparison to various animals. The parameters that limit the performance of the visual system for these different functions were examined. This study was based on literature studies (search in PubMed) and own results. Light sensitivity is limited by the brightness of the retinal image, which in turn is determined by the f‑number of the eye. Furthermore, it is limited by photon noise, thermal decay of rhodopsin, noise in the phototransduction cascade and neuronal processing. In invertebrates, impressive optical tricks have been developed to increase the number of photons reaching the photoreceptors. Furthermore, the spontaneous decay of the photopigment is lower in invertebrates at the cost of higher energy consumption. For depth perception at close range, stereopsis is the most precise but is available only to a few vertebrates. In contrast, motion parallax is used by many species including vertebrates as well as invertebrates. In a few cases accommodation is used for depth measurements or chromatic aberration. In motion vision the temporal resolution of the eye is most important. The ficker fusion frequency correlates in vertebrates with metabolic turnover and body temperature but also has very high values in insects. Apart from that the flicker fusion frequency generally declines with increasing body weight. Compared to animals the performance of the visual system in humans is among the best regarding light sensitivity, is the best regarding depth resolution and in the middle range regarding motion resolution.

A multilayer model of time dependent deformation following an earthquake on a strike-slip fault

NASA Technical Reports Server (NTRS)

Cohen, S. C.

1981-01-01

A multilayer model of the Earth to calculate finite element of time dependent deformation and stress following an earthquake on a strike slip fault is discussed. The model involves shear properties of an elastic upper lithosphere, a standard viscoelastic linear solid lower lithosphere, a Maxwell viscoelastic asthenosphere and an elastic mesosphere. Systematic variations of fault and layer depths and comparisons with simpler elastic lithosphere over viscoelastic asthenosphere calculations are analyzed. Both the creep of the lower lithosphere and astenosphere contribute to the postseismic deformation. The magnitude of the deformation is enhanced by a short distance between the bottom of the fault (slip zone) and the top of the creep region but is less sensitive to the thickness of the creeping layer. Postseismic restressing is increased as the lower lithosphere becomes more viscoelastic, but the tendency for the width of the restressed zone to growth with time is retarded.

Analysis of Stress-Responsive Gene Expression in Cultivated and Weedy Rice Differing in Cold Stress Tolerance

PubMed Central

Pereira, Andy; Tseng, Te-Ming; Zimmer, Paulo Dejalma; Burgos, Nilda Roma

2015-01-01

Rice (Oryza sativa L.) cultivars show impairment of growth in response to environmental stresses such as cold at the early seedling stage. Locally adapted weedy rice is able to survive under adverse environmental conditions, and can emerge in fields from greater soil depth. Cold-tolerant weedy rice can be a good genetic source for developing cold-tolerant, weed-competitive rice cultivars. An in-depth analysis is presented here of diverse indica and japonica rice genotypes, mostly weedy rice, for cold stress response to provide an understanding of different stress adaptive mechanisms towards improvement of the rice crop performance in the field. We have tested a collection of weedy rice genotypes to: 1) classify the subspecies (ssp.) grouping (japonica or indica) of 21 accessions; 2) evaluate their sensitivity to cold stress; and 3) analyze the expression of stress-responsive genes under cold stress and a combination of cold and depth stress. Seeds were germinated at 25°C at 1.5- and 10-cm sowing depth for 10d. Seedlings were then exposed to cold stress at 10°C for 6, 24 and 96h, and the expression of cold-, anoxia-, and submergence-inducible genes was analyzed. Control plants were seeded at 1.5cm depth and kept at 25°C. The analysis revealed that cold stress signaling in indica genotypes is more complex than that of japonica as it operates via both the CBF-dependent and CBF-independent pathways, implicated through induction of transcription factors including OsNAC2, OsMYB46 and OsF-BOX28. When plants were exposed to cold + sowing depth stress, a complex signaling network was induced that involved cross talk between stresses mediated by CBF-dependent and CBF-independent pathways to circumvent the detrimental effects of stresses. The experiments revealed the importance of the CBF regulon for tolerance to both stresses in japonica and indica ssp. The mechanisms for cold tolerance differed among weedy indica genotypes and also between weedy indica and cultivated japonica ssp. as indicated by the up/downregulation of various stress-responsive pathways identified from gene expression analysis. The cold-stress response is described in relation to the stress signaling pathways, showing complex adaptive mechanisms in different genotypes. PMID:26230579

Acceleration or deceleration of self-motion by the Marangoni effect

NASA Astrophysics Data System (ADS)

Matsuda, Yui; Suematsu, Nobuhiko J.; Kitahata, Hiroyuki; Ikura, Yumihiko S.; Nakata, Satoshi

2016-06-01

We investigated the water-depth dependence of the self-motion of a camphor disk and camphor boat. With increasing water depth, the speed of motion of the camphor disk increased, but that of the camphor boat decreased in an annular one-dimensional system. We discussed the difference in the water-depth dependence of the speed of the camphor objects in relation to Marangoni flow. We concluded that Marangoni flow, which became stronger with increasing the water depth, positively and negatively affected the speed of the disk and boat, respectively.

Enhanced nutrient transport improves the depth-dependent properties of tri-layered engineered cartilage constructs with zonal co-culture of chondrocytes and MSCs.

PubMed

Kim, Minwook; Farrell, Megan J; Steinberg, David R; Burdick, Jason A; Mauck, Robert L

2017-08-01

Biomimetic design in cartilage tissue engineering is a challenge given the complexity of the native tissue. While numerous studies have generated constructs with near-native bulk properties, recapitulating the depth-dependent features of native tissue remains a challenge. Furthermore, limitations in nutrient transport and matrix accumulation in engineered constructs hinders maturation within the central core of large constructs. To overcome these limitations, we fabricated tri-layered constructs that recapitulate the depth-dependent cellular organization and functional properties of native tissue using zonally derived chondrocytes co-cultured with MSCs. We also introduced porous hollow fibers (HFs) and HFs/cotton threads to enhance nutrient transport. Our results showed that tri-layered constructs with depth-dependent organization and properties could be fabricated. The addition of HFs or HFs/threads improved matrix accumulation in the central core region. With HF/threads, the local modulus in the deep region of tri-layered constructs nearly matched that of native tissue, though the properties in the central regions remained lower. These constructs reproduced the zonal organization and depth-dependent properties of native tissue, and demonstrate that a layer-by-layer fabrication scheme holds promise for the biomimetic repair of focal cartilage defects. Articular cartilage is a highly organized tissue driven by zonal heterogeneity of cells, extracellular matrix proteins and fibril orientations, resulting in depth-dependent mechanical properties. Therefore, the recapitulation of the functional properties of native cartilage in a tissue engineered construct requires such a biomimetic design of the morphological organization, and this has remained a challenge in cartilage tissue engineering. This study demonstrates that a layer-by-layer fabrication scheme, including co-cultures of zone-specific articular CHs and MSCs, can reproduce the depth-dependent characteristics and mechanical properties of native cartilage while minimizing the need for large numbers of chondrocytes. In addition, introduction of a porous hollow fiber (combined with a cotton thread) enhanced nutrient transport and depth-dependent properties of the tri-layered construct. Such a tri-layered construct may provide critical advantages for focal cartilage repair. These constructs hold promise for restoring native tissue structure and function, and may be beneficial in terms of zone-to-zone integration with adjacent host tissue and providing more appropriate strain transfer after implantation. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Identifying isotropic events using a regional moment tensor inversion

DOE PAGES

Ford, Sean R.; Dreger, Douglas S.; Walter, William R.

2009-01-17

We calculate the deviatoric and isotropic source components for 17 explosions at the Nevada Test Site, as well as 12 earthquakes and 3 collapses in the surrounding region of the western United States, using a regional time domain full waveform inversion for the complete moment tensor. The events separate into specific populations according to their deviation from a pure double-couple and ratio of isotropic to deviatoric energy. The separation allows for anomalous event identification and discrimination between explosions, earthquakes, and collapses. Confidence regions of the model parameters are estimated from the data misfit by assuming normally distributed parameter values. Wemore » investigate the sensitivity of the resolved parameters of an explosion to imperfect Earth models, inaccurate event depths, and data with low signal-to-noise ratio (SNR) assuming a reasonable azimuthal distribution of stations. In the band of interest (0.02–0.10 Hz) the source-type calculated from complete moment tensor inversion is insensitive to velocity model perturbations that cause less than a half-cycle shift (<5 s) in arrival time error if shifting of the waveforms is allowed. The explosion source-type is insensitive to an incorrect depth assumption (for a true depth of 1 km), and the goodness of fit of the inversion result cannot be used to resolve the true depth of the explosion. Noise degrades the explosive character of the result, and a good fit and accurate result are obtained when the signal-to-noise ratio is greater than 5. We assess the depth and frequency dependence upon the resolved explosive moment. As the depth decreases from 1 km to 200 m, the isotropic moment is no longer accurately resolved and is in error between 50 and 200%. Furthermore, even at the most shallow depth the resultant moment tensor is dominated by the explosive component when the data have a good SNR.« less

COSMO-SkyMed Image Investigation of Snow Features in Alpine Environment

PubMed Central

Paloscia, Simonetta; Pettinato, Simone; Santi, Emanuele; Valt, Mauro

2017-01-01

In this work, X band images acquired by COSMO-SkyMed (CSK) on alpine environment have been analyzed for investigating snow characteristics and their effect on backscattering variations. Preliminary results confirmed the capability of simultaneous optical and Synthetic Aperture Radar (SAR) images (Landsat-8 and CSK) in separating snow/no-snow areas and in detecting wet snow. The sensitivity of backscattering to snow depth has not always been confirmed, depending on snow characteristics related to the season. A model based on Dense Media Radiative Transfer theory (DMRT-QMS) was applied for simulating the backscattering response on the X band from snow cover in different conditions of grain size, snow density and depth. By using DMRT-QMS and snow in-situ data collected on Cordevole basin in Italian Alps, the effect of grain size and snow density, beside snow depth and snow water equivalent, was pointed out, showing that the snow features affect the backscatter in different and sometimes opposite ways. Experimental values of backscattering were correctly simulated by using this model and selected intervals of ground parameters. The relationship between simulated and measured backscattering for the entire dataset shows slope >0.9, determination coefficient, R2 = 0.77, and root mean square error, RMSE = 1.1 dB, with p-value <0.05. PMID:28054962

Latitude variation of the subsurface lunar temperature: Lunar Prospector thermal neutrons

NASA Astrophysics Data System (ADS)

Little, R. C.; Feldman, W. C.; Maurice, S.; Genetay, I.; Lawrence, D. J.; Lawson, S. L.; Gasnault, O.; Barraclough, B. L.; Elphic, R. C.; Prettyman, T. H.; Binder, A. B.

2003-05-01

Planetary thermal neutron fluxes provide a sensitive proxy for mafic and feldspathic terranes and are also necessary for translating measured gamma-ray line strengths to elemental abundances. Both functions require a model for near-surface temperatures and a knowledge of the dependence of thermal neutron flux on temperature. We have explored this dependence for a representative sample of lunar soil compositions and surface temperatures using the Monte Carlo N-Particle Code (MCNP™)(MNCP is a trademark of the Regents of the University of California, Los Alamos National Laboratory). For all soil samples, the neutron density is found to be independent of temperature, in accord with neutron moderation theory. The thermal neutron flux, however, does vary with temperature in a way that depends on Δ, the ratio of macroscopic absorption to energy-loss cross sections of soil compositions. The weakest dependence is for the largest Δ (which corresponds to the Apollo 17 high-Ti basalt in our soil selection), and the largest dependence is for the lowest Δ (which corresponds to ferroan anorthosite, [FAN] in our selection). For the lunar model simulated, the depth at which the thermal neutron population is most sensitive to temperature is ~30 g cm-2. These simulations were compared with the flux of thermal neutrons measured using the Lunar Prospector neutron spectrometer over the lunar highlands using a subsurface temperature profile that varies with latitude, λ, as Cos1/4λ. Model results assuming equatorial temperatures of 200 and 250 K are in reasonable agreement with measured data. This range of equatorial temperatures is not inconsistent with the average temperature measured below the diurnal thermal wave at the equator, Tmeas = 252 +/- 3 K [Langseth and Keihm, 1977].

Crustal deformation, the earthquake cycle, and models of viscoelastic flow in the asthenosphere

NASA Technical Reports Server (NTRS)

Cohen, S. C.; Kramer, M. J.

1983-01-01

The crustal deformation patterns associated with the earthquake cycle can depend strongly on the rheological properties of subcrustal material. Substantial deviations from the simple patterns for a uniformly elastic earth are expected when viscoelastic flow of subcrustal material is considered. The detailed description of the deformation pattern and in particular the surface displacements, displacement rates, strains, and strain rates depend on the structure and geometry of the material near the seismogenic zone. The origin of some of these differences are resolved by analyzing several different linear viscoelastic models with a common finite element computational technique. The models involve strike-slip faulting and include a thin channel asthenosphere model, a model with a varying thickness lithosphere, and a model with a viscoelastic inclusion below the brittle slip plane. The calculations reveal that the surface deformation pattern is most sensitive to the rheology of the material that lies below the slip plane in a volume whose extent is a few times the fault depth. If this material is viscoelastic, the surface deformation pattern resembles that of an elastic layer lying over a viscoelastic half-space. When the thickness or breath of the viscoelastic material is less than a few times the fault depth, then the surface deformation pattern is altered and geodetic measurements are potentially useful for studying the details of subsurface geometry and structure. Distinguishing among the various models is best accomplished by making geodetic measurements not only near the fault but out to distances equal to several times the fault depth. This is where the model differences are greatest; these differences will be most readily detected shortly after an earthquake when viscoelastic effects are most pronounced.

Sensitivity of Photosynthetic Gas Exchange and Growth of Lodgepole Pine to Climate Variability Depends on the Age of Pleistocene Glacial Surfaces

NASA Astrophysics Data System (ADS)

Osborn, B.; Chapple, W.; Ewers, B. E.; Williams, D. G.

2014-12-01

The interaction between soil conditions and climate variability plays a central role in the ecohydrological functions of montane conifer forests. Although soil moisture availability to trees is largely dependent on climate, the depth and texture of soil exerts a key secondary influence. Multiple Pleistocene glacial events have shaped the landscape of the central Rocky Mountains creating a patchwork of soils differing in age and textural classification. This mosaic of soil conditions impacts hydrological properties, and montane conifer forests potentially respond to climate variability quite differently depending on the age of glacial till and soil development. We hypothesized that the age of glacial till and associated soil textural changes exert strong control on growth and photosynthetic gas exchange of lodgepole pine. We examined physiological and growth responses of lodgepole pine to interannual variation in maximum annual snow water equivalence (SWEmax) of montane snowpack and growing season air temperature (Tair) and vapor pressure deficit (VPD) across a chronosequence of Pleistocene glacial tills ranging in age from 700k to 12k years. Soil textural differences across the glacial tills illustrate the varying degrees of weathering with the most well developed soils with highest clay content on the oldest till surfaces. We show that sensitivity of growth and carbon isotope discrimination, an integrated measure of canopy gas exchange properties, to interannual variation SWEmax , Tair and VPD is greatest on young till surfaces, whereas trees on old glacial tills with well-developed soils are mostly insensitive to these interannual climate fluctuations. Tree-ring widths were most sensitive to changes in SWEmax on young glacial tills (p < 0.01), and less sensitive on the oldest till (p < 0.05). Tair correlates strongly with δ13C values on the oldest and youngest tills sites, but shows no significant relationship on the middle aged glacial till. It is clear that growth and photosynthetic gas exchange parameters are sensitive to glacial till surfaces, which is evident by the different responses to SWEmax and Tair across sites.

Sensitivity of land surface modeling to parameters: An uncertainty quantification method applied to the Community Land Model

NASA Astrophysics Data System (ADS)

Ricciuto, D. M.; Mei, R.; Mao, J.; Hoffman, F. M.; Kumar, J.

2015-12-01

Uncertainties in land parameters could have important impacts on simulated water and energy fluxes and land surface states, which will consequently affect atmospheric and biogeochemical processes. Therefore, quantification of such parameter uncertainties using a land surface model is the first step towards better understanding of predictive uncertainty in Earth system models. In this study, we applied a random-sampling, high-dimensional model representation (RS-HDMR) method to analyze the sensitivity of simulated photosynthesis, surface energy fluxes and surface hydrological components to selected land parameters in version 4.5 of the Community Land Model (CLM4.5). Because of the large computational expense of conducting ensembles of global gridded model simulations, we used the results of a previous cluster analysis to select one thousand representative land grid cells for simulation. Plant functional type (PFT)-specific uniform prior ranges for land parameters were determined using expert opinion and literature survey, and samples were generated with a quasi-Monte Carlo approach-Sobol sequence. Preliminary analysis of 1024 simulations suggested that four PFT-dependent parameters (including slope of the conductance-photosynthesis relationship, specific leaf area at canopy top, leaf C:N ratio and fraction of leaf N in RuBisco) are the dominant sensitive parameters for photosynthesis, surface energy and water fluxes across most PFTs, but with varying importance rankings. On the other hand, for surface ans sub-surface runoff, PFT-independent parameters, such as the depth-dependent decay factors for runoff, play more important roles than the previous four PFT-dependent parameters. Further analysis by conditioning the results on different seasons and years are being conducted to provide guidance on how climate variability and change might affect such sensitivity. This is the first step toward coupled simulations including biogeochemical processes, atmospheric processes or both to determine the full range of sensitivity of Earth system modeling to land-surface parameters. This can facilitate sampling strategies in measurement campaigns targeted at reduction of climate modeling uncertainties and can also provide guidance on land parameter calibration for simulation optimization.

Diffuse optical microscopy for quantification of depth-dependent epithelial backscattering in the cervix

NASA Astrophysics Data System (ADS)

Bodenschatz, Nico; Lam, Sylvia; Carraro, Anita; Korbelik, Jagoda; Miller, Dianne M.; McAlpine, Jessica N.; Lee, Marette; Kienle, Alwin; MacAulay, Calum

2016-06-01

A fiber optic imaging approach is presented using structured illumination for quantification of almost pure epithelial backscattering. We employ multiple spatially modulated projection patterns and camera-based reflectance capture to image depth-dependent epithelial scattering. The potential diagnostic value of our approach is investigated on cervical ex vivo tissue specimens. Our study indicates a strong backscattering increase in the upper part of the cervical epithelium caused by dysplastic microstructural changes. Quantization of relative depth-dependent backscattering is confirmed as a potentially useful diagnostic feature for detection of precancerous lesions in cervical squamous epithelium.

Shallow bedrock limits groundwater seepage-based headwater climate refugia

USGS Publications Warehouse

Briggs, Martin A.; Lane, John W.; Snyder, Craig D.; White, Eric A.; Johnson, Zachary; Nelms, David L.; Hitt, Nathaniel P.

2018-01-01

Groundwater/surface-water exchanges in streams are inexorably linked to adjacent aquifer dynamics. As surface-water temperatures continue to increase with climate warming, refugia created by groundwater connectivity is expected to enable cold water fish species to survive. The shallow alluvial aquifers that source groundwater seepage to headwater streams, however, may also be sensitive to seasonal and long-term air temperature dynamics. Depth to bedrock can directly influence shallow aquifer flow and thermal sensitivity, but is typically ill-defined along the stream corridor in steep mountain catchments. We employ rapid, cost-effective passive seismic measurements to evaluate the variable thickness of the shallow colluvial and alluvial aquifer sediments along a headwater stream supporting cold water-dependent brook trout (Salvelinus fontinalis) in Shenandoah National Park, VA, USA. Using a mean depth to bedrock of 2.6 m, numerical models predicted strong sensitivity of shallow aquifer temperature to the downward propagation of surface heat. The annual temperature dynamics (annual signal amplitude attenuation and phase shift) of potential seepage sourced from the shallow modeled aquifer were compared to several years of paired observed stream and air temperature records. Annual stream water temperature patterns were found to lag local air temperature by ∼8–19 d along the stream corridor, indicating that thermal exchange between the stream and shallow groundwater is spatially variable. Locations with greater annual signal phase lag were also associated with locally increased amplitude attenuation, further suggestion of year-round buffering of channel water temperature by groundwater seepage. Numerical models of shallow groundwater temperature that incorporate regional expected climate warming trends indicate that the summer cooling capacity of this groundwater seepage will be reduced over time, and lower-elevation stream sections may no longer serve as larger-scale climate refugia for cold water fish species, even with strong groundwater discharge.

Soil organic matter decomposition and temperature sensitivity after forest fire in permafrost regions in Canada

NASA Astrophysics Data System (ADS)

Aaltonen, Heidi; Palviainen, Marjo; Köster, Kajar; Berninger, Frank; Pumpanen, Jukka

2017-04-01

On the Northern Hemisphere, 24% of soils are underlain by permafrost. These soils contain 50% of the global soil carbon pool. The Northern Hemisphere is also the region which is predicted to be most affected by climate warming and this causes uncertainties over the future of the permafrost. It has been estimated that 25% of permafrost might thaw by 2100, exposing previously frozen carbon pools to decomposition. In addition, global warming is expected to cause increase in the frequency of wild fires, which further increase permafrost melting by removing the insulating organic surface layer. The amount of released soil carbon from permafrost soils after forest fire is affected by degradability and temperature sensitivity of the soil organic matter, as well as soil depth and the stage of succession. Yet the common effect of these factors remains unclear. We studied how soil respiration and its temperature sensitivity (Q10) vary in different depths and within time by taking soil samples from different fire chronosequence areas (burned 3, 25, 46 and 100 years ago) from permafrost region in Northern Canada (Yukon and Northwest Territories, along Dempster Highway). The samples from three different depths (5, 10 and 30 cm) were incubated in four different temperatures (1, 7, 13 and 19°C) over 24h. Our results showed that the CO2 fluxes followed the stages of succession, with recently burned sites having lowest rates. The organic matter at 5 cm depth proved to be more labile and temperature sensitive than in deeper depths. The Q10 values, however, did not differ between sites, excluding 30 cm at the most recently burned site that had a significantly higher Q10 value than the other sites. The results implicate that heterotrophic soil respiration decreases on permafrost regions during the first stages after forest fire. At the same time the temperature sensitivity in deeper soil layers may increase.

Deep Tissue Photoacoustic Imaging Using a Miniaturized 2-D Capacitive Micromachined Ultrasonic Transducer Array

PubMed Central

Kothapalli, Sri-Rajasekhar; Ma, Te-Jen; Vaithilingam, Srikant; Oralkan, Ömer

2014-01-01

In this paper, we demonstrate 3-D photoacoustic imaging (PAI) of light absorbing objects embedded as deep as 5 cm inside strong optically scattering phantoms using a miniaturized (4 mm × 4 mm × 500 µm), 2-D capacitive micromachined ultrasonic transducer (CMUT) array of 16 × 16 elements with a center frequency of 5.5 MHz. Two-dimensional tomographic images and 3-D volumetric images of the objects placed at different depths are presented. In addition, we studied the sensitivity of CMUT-based PAI to the concentration of indocyanine green dye at 5 cm depth inside the phantom. Under optimized experimental conditions, the objects at 5 cm depth can be imaged with SNR of about 35 dB and a spatial resolution of approximately 500 µm. Results demonstrate that CMUTs with integrated front-end amplifier circuits are an attractive choice for achieving relatively high depth sensitivity for PAI. PMID:22249594

Penetration depth of MgB2 measured using Josephson junctions and SQUIDs

NASA Astrophysics Data System (ADS)

Cunnane, Daniel; Zhuang, Chenggang; Chen, Ke; Xi, X. X.; Yong, Jie; Lemberger, T. R.

2013-02-01

The penetration depth of MgB2 was measured using two methods of different mechanisms. The first method used MgB2 Josephson junctions and the magnetic field dependence of the junction critical current. The second method deduced the penetration depth from the inductance of a MgB2 microstrip used to modulate the voltage of a MgB2 DC SQUID. The two methods showed a consistent value of the low-temperature penetration depth for MgB2 to be about 40 nm. Both the small penetration depth value and its temperature dependence are in agreement with a microscopic theory for MgB2 in the clean limit.

Single event upsets in semiconductor devices induced by highly ionising particles.

PubMed

Sannikov, A V

2004-01-01

A new model of single event upsets (SEUs), created in memory cells by heavy ions and high energy hadrons, has been developed. The model takes into account the spatial distribution of charge collection efficiency over the cell area not considered in previous approaches. Three-dimensional calculations made by the HADRON code have shown good agreement with experimental data for the energy dependence of proton SEU cross sections, sensitive depths and other SEU observables. The model is promising for prediction of SEU rates for memory chips exposed in space and in high-energy experiments as well as for the development of a high-energy neutron dosemeter based on the SEU effect.

Techniques for detecting the Cherenkov light from cascade showers in water

NASA Astrophysics Data System (ADS)

Khomyakov, V. A.; Bogdanov, A. G.; Kindin, V. V.; Kokoulin, R. P.; Petrukhin, A. A.; Khokhlov, S. S.; Shutenko, V. V.; Yashin, I. I.

2018-01-01

The NEVOD Cherenkov water detector (CWD) features a denser lattice of sensitive elements than the existing large-scale CWDs, whereby the spatial distribution of Cherenkov light from cascade showers is sampled with a superior resolution of 0.5 m, which is close to one radiation length for water (36 cm). The experimental techniques for investigating the Cherenkov light generated by particle cascades in water is proposed. The dependence of light intensity on the depth of shower development is for the first time measured at different distances from the shower axis. The results are compared with the Cherenkov light distributions predicted by various model descriptions for the scattering of cascade particles.

Atomic bonding effects in annular dark field scanning transmission electron microscopy. II. Experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Odlyzko, Michael L.; Held, Jacob T.; Mkhoyan, K. Andre, E-mail: mkhoyan@umn.edu

2016-07-15

Quantitatively calibrated annular dark field scanning transmission electron microscopy (ADF-STEM) imaging experiments were compared to frozen phonon multislice simulations adapted to include chemical bonding effects. Having carefully matched simulation parameters to experimental conditions, a depth-dependent bonding effect was observed for high-angle ADF-STEM imaging of aluminum nitride. This result is explained by computational predictions, systematically examined in the preceding portion of this study, showing the propagation of the converged STEM beam to be highly sensitive to net interatomic charge transfer. Thus, although uncertainties in experimental conditions and simulation accuracy remain, the computationally predicted experimental bonding effect withstands the experimental testing reportedmore » here.« less

Regional sensitivities of seasonal snowpack to elevation, aspect, and vegetation cover in western North America

NASA Astrophysics Data System (ADS)

Tennant, Christopher J.; Harpold, Adrian A.; Lohse, Kathleen Ann; Godsey, Sarah E.; Crosby, Benjamin T.; Larsen, Laurel G.; Brooks, Paul D.; Van Kirk, Robert W.; Glenn, Nancy F.

2017-08-01

In mountains with seasonal snow cover, the effects of climate change on snowpack will be constrained by landscape-vegetation interactions with the atmosphere. Airborne lidar surveys used to estimate snow depth, topography, and vegetation were coupled with reanalysis climate products to quantify these interactions and to highlight potential snowpack sensitivities to climate and vegetation change across the western U.S. at Rocky Mountain (RM), Northern Basin and Range (NBR), and Sierra Nevada (SNV) sites. In forest and shrub areas, elevation captured the greatest amount of variability in snow depth (16-79%) but aspect explained more variability (11-40%) in alpine areas. Aspect was most important at RM sites where incoming shortwave to incoming net radiation (SW:NetR↓) was highest (˜0.5), capturing 17-37% of snow depth variability in forests and 32-37% in shrub areas. Forest vegetation height exhibited negative relationships with snow depth and explained 3-6% of its variability at sites with greater longwave inputs (NBR and SNV). Variability in the importance of physiography suggests differential sensitivities of snowpack to climate and vegetation change. The high SW:NetR↓ and importance of aspect suggests RM sites may be more responsive to decreases in SW:NetR↓ driven by warming or increases in humidity or cloud cover. Reduced canopy-cover could increase snow depths at SNV sites, and NBR and SNV sites are currently more sensitive to shifts from snow to rain. The consistent importance of aspect and elevation indicates that changes in SW:NetR↓ and the elevation of the rain/snow transition zone could have widespread and varied effects on western U.S. snowpacks.

A new, improved and fully automatic method for teleseismic depth estimation of moderate earthquakes (4.5 < M < 5.5): application to the Guerrero subduction zone (Mexico)

NASA Astrophysics Data System (ADS)

Letort, Jean; Guilbert, Jocelyn; Cotton, Fabrice; Bondár, István; Cano, Yoann; Vergoz, Julien

2015-06-01

The depth of an earthquake is difficult to estimate because of the trade-off between depth and origin time estimations, and because it can be biased by lateral Earth heterogeneities. To face this challenge, we have developed a new, blind and fully automatic teleseismic depth analysis. The results of this new method do not depend on epistemic uncertainties due to depth-phase picking and identification. The method consists of a modification of the cepstral analysis from Letort et al. and Bonner et al., which aims to detect surface reflected (pP, sP) waves in a signal at teleseismic distances (30°-90°) through the study of the spectral holes in the shape of the signal spectrum. The ability of our automatic method to improve depth estimations is shown by relocation of the recent moderate seismicity of the Guerrero subduction area (Mexico). We have therefore estimated the depth of 152 events using teleseismic data from the IRIS stations and arrays. One advantage of this method is that it can be applied for single stations (from IRIS) as well as for classical arrays. In the Guerrero area, our new cepstral analysis efficiently clusters event locations and provides an improved view of the geometry of the subduction. Moreover, we have also validated our method through relocation of the same events using the new International Seismological Centre (ISC)-locator algorithm, as well as comparing our cepstral depths with the available Harvard-Centroid Moment Tensor (CMT) solutions and the three available ground thrust (GT5) events (where lateral localization is assumed to be well constrained with uncertainty <5 km) for this area. These comparisons indicate an overestimation of focal depths in the ISC catalogue for deeper parts of the subduction, and they show a systematic bias between the estimated cepstral depths and the ISC-locator depths. Using information from the CMT catalogue relating to the predominant focal mechanism for this area, this bias can be explained as a misidentification of sP phases by pP phases, which shows the greater interest for the use of this new automatic cepstral analysis, as it is less sensitive to phase identification.

Dielectric analysis of depth dependent curing behavior of dental resin composites.

PubMed

Steinhaus, Johannes; Moeginger, Bernhard; Grossgarten, Mandy; Rosentritt, Martin; Hausnerova, Berenika

2014-06-01

The aim of this study is to investigate depth dependent changes of polymerization process and kinetics of visible light-curing (VLC) dental composites in real-time. The measured quantity - "ion viscosity" determined by dielectric analysis (DEA) - provides the depth dependent reaction rate which is correlated to the light intensity available in the corresponding depths derived from light transmission measurements. The ion viscosity curves of two composites (VOCO Arabesk Top and Grandio) were determined during irradiation of 40s with a light-curing unit (LCU) in specimen depths of 0.5/0.75/1.0/1.25/1.5/1.75 and 2.0mm using a dielectric cure analyzer (NETZSCH DEA 231 with Mini IDEX sensors). The thickness dependent light transmission was measured by irradiation composite specimens of various thicknesses on top of a radiometer setup. The shape of the ion viscosity curves depends strongly on the specimen thickness above the sensor. All curves exhibit a range of linear time dependency of the ion viscosity after a certain initiation time. The determined initiation times, the slopes of the linear part of the curves, and the ion viscosities at the end of the irradiation differ significantly with depth within the specimen. The slopes of the ion viscosity curves as well as the light intensity values decrease with depth and fit to the Lambert-Beer law. The corresponding attenuation coefficients are determined for Arabesk Top OA2 to 1.39mm(-1) and 1.48mm(-1), respectively, and for Grandio OA2 with 1.17 and 1.39mm(-1), respectively. For thicknesses exceeding 1.5mm a change in polymerization behavior is observed as the ion viscosity increases subsequent to the linear range indicating some kind of reaction acceleration. The two VLC composites and different specimen thicknesses discriminate significantly in their ion viscosity evolution allowing for a precise characterization of the curing process even with respect to the polymerization mechanism. Copyright © 2014. Published by Elsevier Ltd.

Depth-Dependent Glycosaminoglycan Concentration in Articular Cartilage by Quantitative Contrast-Enhanced Micro–Computed Tomography

PubMed Central

Mittelstaedt, Daniel

2015-01-01

Objective A quantitative contrast-enhanced micro–computed tomography (qCECT) method was developed to investigate the depth dependency and heterogeneity of the glycosaminoglycan (GAG) concentration of ex vivo cartilage equilibrated with an anionic radiographic contrast agent, Hexabrix. Design Full-thickness fresh native (n = 19 in 3 subgroups) and trypsin-degraded (n = 6) articular cartilage blocks were imaged using micro–computed tomography (μCT) at high resolution (13.4 μm3) before and after equilibration with various Hexabrix bathing concentrations. The GAG concentration was calculated depth-dependently based on Gibbs-Donnan equilibrium theory. Analysis of variance with Tukey’s post hoc was used to test for statistical significance (P < 0.05) for effect of Hexabrix bathing concentration, and for differences in bulk and zonal GAG concentrations individually and compared between native and trypsin-degraded cartilage. Results The bulk GAG concentration was calculated to be 74.44 ± 6.09 and 11.99 ± 4.24 mg/mL for native and degraded cartilage, respectively. A statistical difference was demonstrated for bulk and zonal GAG between native and degraded cartilage (P < 0.032). A statistical difference was not demonstrated for bulk GAG when comparing Hexabrix bathing concentrations (P > 0.3214) for neither native nor degraded cartilage. Depth-dependent GAG analysis of native cartilage revealed a statistical difference only in the radial zone between 30% and 50% Hexabrix bathing concentrations. Conclusions This nondestructive qCECT methodology calculated the depth-dependent GAG concentration for both native and trypsin-degraded cartilage at high spatial resolution. qCECT allows for more detailed understanding of the topography and depth dependency, which could help diagnose health, degradation, and repair of native and contrived cartilage. PMID:26425259

The Evolution of the Seismic-Aseismic Transition During the Earthquake Cycle: Constraints from the Time-Dependent Depth Distribution of Aftershocks

NASA Astrophysics Data System (ADS)

Rolandone, F.; Bürgmann, R.; Nadeau, R.; Freed, A.

2003-12-01

We have demonstrated that in the aftermath of large earthquakes, the depth extent of aftershocks shows an immediate deepening from pre-earthquake levels, followed by a time-dependent postseismic shallowing. We use these seismic data to constrain the variation of the depth of the seismic-aseismic transition with time throughout the earthquake cycle. Most studies of the seismic-aseismic transition have focussed on the effect of temperature and/or lithology on the transition either from brittle faulting to viscous flow or from unstable to stable sliding. They have shown that the maximum depth of seismic activity is well correlated with the spatial variations of these two parameters. However, little has been done to examine how the maximum depth of seismogenic faulting varies locally, at the scale of a fault segment, during the course of the earthquake cycle. Geologic and laboratory observations indicate that the depth of the seismic-aseismic transition should vary with strain rate and thus change with time throughout the earthquake cycle. We quantify the time-dependent variations in the depth of seismicity on various strike-slip faults in California before and after large earthquakes. We specifically investigate (1) the deepening of the aftershocks relative to the background seismicity, (2) the time constant of the postseismic shallowing of the deepest earthquakes, and (3) the correlation of the time-dependent pattern with the coseismic slip distribution and the expected stress increase. Together with geodetic measurements, these seismological observations form the basis for developing more sophisticated models for the mechanical evolution of strike-slip shear zones during the earthquake cycle. We develop non-linear viscoelastic models, for which the brittle-ductile transition is not fixed, but varies with assumed temperature and calculated stress gradients. We use them to place constraints on strain rate at depth, on time-dependent rheology, and on the partitioning of deformation between brittle faulting and distributed viscous flow associated with the earthquake cycle.

Monte-Carlo based Uncertainty Analysis For CO2 Laser Microchanneling Model

NASA Astrophysics Data System (ADS)

Prakash, Shashi; Kumar, Nitish; Kumar, Subrata

2016-09-01

CO2 laser microchanneling has emerged as a potential technique for the fabrication of microfluidic devices on PMMA (Poly-methyl-meth-acrylate). PMMA directly vaporizes when subjected to high intensity focused CO2 laser beam. This process results in clean cut and acceptable surface finish on microchannel walls. Overall, CO2 laser microchanneling process is cost effective and easy to implement. While fabricating microchannels on PMMA using a CO2 laser, the maximum depth of the fabricated microchannel is the key feature. There are few analytical models available to predict the maximum depth of the microchannels and cut channel profile on PMMA substrate using a CO2 laser. These models depend upon the values of thermophysical properties of PMMA and laser beam parameters. There are a number of variants of transparent PMMA available in the market with different values of thermophysical properties. Therefore, for applying such analytical models, the values of these thermophysical properties are required to be known exactly. Although, the values of laser beam parameters are readily available, extensive experiments are required to be conducted to determine the value of thermophysical properties of PMMA. The unavailability of exact values of these property parameters restrict the proper control over the microchannel dimension for given power and scanning speed of the laser beam. In order to have dimensional control over the maximum depth of fabricated microchannels, it is necessary to have an idea of uncertainty associated with the predicted microchannel depth. In this research work, the uncertainty associated with the maximum depth dimension has been determined using Monte Carlo method (MCM). The propagation of uncertainty with different power and scanning speed has been predicted. The relative impact of each thermophysical property has been determined using sensitivity analysis.

AN ADJOINT-BASED METHOD FOR THE INVERSION OF THE JUNO AND CASSINI GRAVITY MEASUREMENTS INTO WIND FIELDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Galanti, Eli; Kaspi, Yohai, E-mail: eli.galanti@weizmann.ac.il

2016-04-01

During 2016–17, the Juno and Cassini spacecraft will both perform close eccentric orbits of Jupiter and Saturn, respectively, obtaining high-precision gravity measurements for these planets. These data will be used to estimate the depth of the observed surface flows on these planets. All models to date, relating the winds to the gravity field, have been in the forward direction, thus only allowing the calculation of the gravity field from given wind models. However, there is a need to do the inverse problem since the new observations will be of the gravity field. Here, an inverse dynamical model is developed tomore » relate the expected measurable gravity field, to perturbations of the density and wind fields, and therefore to the observed cloud-level winds. In order to invert the gravity field into the 3D circulation, an adjoint model is constructed for the dynamical model, thus allowing backward integration. This tool is used for the examination of various scenarios, simulating cases in which the depth of the wind depends on latitude. We show that it is possible to use the gravity measurements to derive the depth of the winds, both on Jupiter and Saturn, also taking into account measurement errors. Calculating the solution uncertainties, we show that the wind depth can be determined more precisely in the low-to-mid-latitudes. In addition, the gravitational moments are found to be particularly sensitive to flows at the equatorial intermediate depths. Therefore, we expect that if deep winds exist on these planets they will have a measurable signature by Juno and Cassini.« less

An ultrasonic measurement for in vitro depth-dependent equilibrium strains of articular cartilage in compression

NASA Astrophysics Data System (ADS)

Zheng, Y. P.; Mak, A. F. T.; Lau, K. P.; Qin, L.

2002-09-01

The equilibrium depth-dependent biomechanical properties of articular cartilage were measured using an ultrasound-compression method. Ten cylindrical bovine patella cartilage-bone specimens were tested in compression followed by a period of force-relaxation. A 50 MHz focused ultrasound beam was transmitted into the cartilage specimen through a remaining bone layer and a small hole at the centre of a specimen platform. The ultrasound echoes reflected or scattered within the articular cartilage were collected using the same transducer. The displacements of the tissues at different depths of the articular cartilage were derived from the ultrasound echo signals recorded during the compression and the subsequent force-relaxation. For two steps of 0.1 mm compression, the average strain at the superficial 0.2 mm thick layer (0.35 +/- 0.09) was significantly (p < 0.05) larger than that at the subsequent 0.2 mm thick layer (0.05 +/- 0.07) and that at deeper layers (0.01 +/- 0.02). It was demonstrated that the compressive biomechanical properties of cartilage were highly depth-dependent. The results suggested that the ultrasound-compression method could be a useful tool for the study of the depth-dependent biomechanical properties of articular cartilage.

Chromatic assimilation unaffected by perceived depth of inducing light.

PubMed

Shevell, Steven K; Cao, Dingcai

2004-01-01

Chromatic assimilation is a shift toward the color of nearby light. Several studies conclude that a neural process contributes to assimilation but the neural locus remains in question. Some studies posit a peripheral process, such as retinal receptive-field organization, while others claim the neural mechanism follows depth perception, figure/ground segregation, or perceptual grouping. The experiments here tested whether assimilation depends on a neural process that follows stereoscopic depth perception. By introducing binocular disparity, the test field judged in color was made to appear in a different depth plane than the light that induced assimilation. The chromaticity and spatial frequency of the inducing light, and the chromaticity of the test light, were varied. Chromatic assimilation was found with all inducing-light sizes and chromaticities, but the magnitude of assimilation did not depend on the perceived relative depth planes of the test and inducing fields. We found no evidence to support the view that chromatic assimilation depends on a neural process that follows binocular combination of the two eyes' signals.

Use of cues in virtual reality depends on visual feedback.

PubMed

Fulvio, Jacqueline M; Rokers, Bas

2017-11-22

3D motion perception is of central importance to daily life. However, when tested in laboratory settings, sensitivity to 3D motion signals is found to be poor, leading to the view that heuristics and prior assumptions are critical for 3D motion perception. Here we explore an alternative: sensitivity to 3D motion signals is context-dependent and must be learned based on explicit visual feedback in novel environments. The need for action-contingent visual feedback is well-established in the developmental literature. For example, young kittens that are passively moved through an environment, but unable to move through it themselves, fail to develop accurate depth perception. We find that these principles also obtain in adult human perception. Observers that do not experience visual consequences of their actions fail to develop accurate 3D motion perception in a virtual reality environment, even after prolonged exposure. By contrast, observers that experience the consequences of their actions improve performance based on available sensory cues to 3D motion. Specifically, we find that observers learn to exploit the small motion parallax cues provided by head jitter. Our findings advance understanding of human 3D motion processing and form a foundation for future study of perception in virtual and natural 3D environments.

Determining the sensitivity of the amplitude source location (ASL) method through active seismic sources: An example from Te Maari Volcano, New Zealand

NASA Astrophysics Data System (ADS)

Walsh, Braden; Jolly, Arthur; Procter, Jonathan

2017-04-01

Using active seismic sources on Tongariro Volcano, New Zealand, the amplitude source location (ASL) method is calibrated and optimized through a series of sensitivity tests. By applying a geologic medium velocity of 1500 m/s and an attenuation value of Q=60 for surface waves along with amplification factors computed from regional earthquakes, the ASL produced location discrepancies larger than 1.0 km horizontally and up to 0.5 km in depth. Through the use of sensitivity tests on input parameters, we show that velocity and attenuation models have moderate to strong influences on the location results, but can be easily constrained. Changes in locations are accommodated through either lateral or depth movements. Station corrections (amplification factors) and station geometry strongly affect the ASL locations laterally, horizontally and in depth. Calibrating the amplification factors through the exploitation of the active seismic source events reduced location errors for the sources by up to 50%.

Temperature-dependent Raman spectroscopy studies of the interface coupling effect of monolayer ReSe2 single crystals on Au foils

NASA Astrophysics Data System (ADS)

Jiang, Shaolong; Zhao, Liyun; Shi, Yuping; Xie, Chunyu; Zhang, Na; Zhang, Zhepeng; Huan, Yahuan; Yang, Pengfei; Hong, Min; Zhou, Xiebo; Shi, Jianping; Zhang, Qing; Zhang, Yanfeng

2018-05-01

Rhenium diselenide (ReSe2), which bears in-plane anisotropic optical and electrical properties, is of considerable interest for its excellent applications in novel devices, such as polarization-sensitive photodetectors and integrated polarization-controllers. However, great challenges to date in the controllable synthesis of high-quality ReSe2 have hindered its in-depth investigations and practical applications. Herein, we report a feasible synthesis of monolayer single-crystal ReSe2 flakes on the Au foil substrate by using a chemical vapor deposition route. Particularly, we focus on the temperature-dependent Raman spectroscopy investigations of monolayer ReSe2 grown on Au foils, which present concurrent red shifts of Eg-like and Ag-like modes with increasing measurement temperature from 77–290 K. Linear temperature dependences of both modes are revealed and explained from the anharmonic vibration of the ReSe2 lattice. More importantly, the strong interaction of ReSe2 with Au, with respect to that with SiO2/Si, is further confirmed by temperature-dependent Raman characterization. This work is thus proposed to shed light on the optical and thermal properties of such anisotropic two-dimensional three-atom-thick materials.

Depth resolved grazing incidence neutron scattering experiments from semi-infinite interfaces: a statistical analysis of the scattering contributions

NASA Astrophysics Data System (ADS)

Adlmann, Franz A.; Herbel, Jörg; Korolkovas, Airidas; Bliersbach, Andreas; Toperverg, Boris; Van Herck, Walter; Pálsson, Gunnar K.; Kitchen, Brian; Wolff, Max

2018-04-01

Grazing incidence neutron scattering experiments offer surface sensitivity by reflecting from an interface at momentum transfers close to total external reflection. Under these conditions the penetration depth is strongly non-linear and may change by many orders of magnitude. This fact imposes severe challenges for depth resolved experiments, since the brilliance of neutron beams is relatively low in comparison to e.g. synchrotron radiation. In this article we use probability density functions to calculate the contribution of scattering at different distances from an interface to the intensities registered on the detector. Our method has the particular advantage that the depth sensitivity is directly extracted from the scattering pattern itself. Hence for perfectly known samples exact resolution functions can be calculated and visa versa. We show that any tails in the resolution function, e.g. Gaussian shaped, hinders depth resolved experiments. More importantly we provide means for a descriptive statistical analysis of detector images with respect to the scattering contributions and show that even for perfect resolution near surface scattering is hardly accessible.

Couple relationships in families with dependent children after a diagnosis of maternal breast cancer in the United Kingdom: Perspectives from mothers and fathers.

PubMed

Corney, Roslyn; Puthussery, Shuby; Swinglehurst, Jane

2016-01-01

This article examines the facilitators and the barriers to couple relationships in families in the UK with dependent children after a diagnosis of maternal breast cancer. Qualitative data were collected through in-depth semi-structured interviews with 23 participants, including 10 couples and three women whose partners did not take part. Recorded interviews were analyzed using a thematic approach identifying themes and patterns in the interview transcripts and categorizing them using a framework. Key individual and contextual factors perceived as barriers or facilitators to couple relationships included: being a "young" family with young children, frustration and resentment from male partners, women's reactions to the illness, individual communication styles, differing needs for "personal space," body image concerns, and social support. Findings indicated the need for strengthening "family focus" in services with adequate support for male partners. Health and family services should consider variability in the experiences of couples with dependent children and be sensitive to the needs of partners alongside the women.

Evaluation of bonding agent application on concrete patch performance.

DOT National Transportation Integrated Search

2014-08-01

The durability of partial depth repair is directly related to the bond strength between the repair material and existing : concrete. Bond strength development sensitivity to wait time with the use of bonding agents in partial depth repair was : inves...

Design and simulation of a novel method for determining depth-of-interaction in a PET scintillation crystal array using a single-ended readout by a multi-anode PMT

NASA Astrophysics Data System (ADS)

Ito, Mikiko; Lee, Jae Sung; Park, Min-Jae; Sim, Kwang-Souk; Jong Hong, Seong

2010-07-01

PET detectors with depth-of-interaction (DOI) encoding capability allow high spatial resolution and high sensitivity to be achieved simultaneously. To obtain DOI information from a mono-layer array of scintillation crystals using a single-ended readout, the authors devised a method based on light spreading within a crystal array and performed Monte Carlo simulations with individual scintillation photon tracking to prove the concept. A scintillation crystal array model was constructed using a grid method. Conventional grids are constructed using comb-shaped reflector strips with rectangular teeth to isolate scintillation crystals optically. However, the authors propose the use of triangularly shaped teeth, such that scintillation photons spread only in the x-direction in the upper halves of crystals and in the y-direction in lower halves. DOI positions can be estimated by considering the extent of two-dimensional light dispersion, which can be determined from the multiple anode outputs of a position-sensitive PMT placed under the crystal array. In the main simulation, a crystal block consisting of a 29 × 29 array of 1.5 mm × 1.5 mm × 20 mm crystals and a multi-anode PMT with 16 × 16 pixels were used. The effects of crystal size and non-uniform PMT output gain were also explored by simulation. The DOI resolution estimated for 1.5 × 1.5 × 20 mm3 crystals was 2.16 mm on average. Although the flood map was depth dependent, each crystal was well identified at all depths when a corner of the crystal array was irradiated with 511 keV gamma rays (peak-to-valley ratio ~9:1). DOI resolution was better than 3 mm up to a crystal length of 28 mm with a 1.5 × 1.5 mm2 or 2.0 × 2.0 mm2 crystal surface area. The devised light-sharing method allowed excellent DOI resolutions to be obtained without the use of dual-ended readout or multiple crystal arrays.

Estimation of infiltration and hydraulic resistance in furrow irrigation, with infiltration dependent on flow depth

USDA-ARS?s Scientific Manuscript database

The estimation of parameters of a flow-depth dependent furrow infiltration model and of hydraulic resistance, using irrigation evaluation data, was investigated. The estimated infiltration parameters are the saturated hydraulic conductivity and the macropore volume per unit area. Infiltration throu...

Paleo-Productivity across the Paleocene-Eocene Thermal Maximum, Walvis Ridge Transect (ODP Sites 1262, 1263, and 1266)

NASA Astrophysics Data System (ADS)

Chun, C. O.; Delaney, M. L.; Zachos, J. C.

2005-12-01

Walvis Ridge transect (Ocean Drilling Program (ODP) Leg 208) provides the first high-resolution depth-transect of deep-sea sediments recovered from the south Atlantic across the P/E boundary. A geographically restricted depth transect (~ 2.2 km, water depths between 2500 and 4770 m) allows us to constrain the surface waters by assuming marine productivity conditions in the overlying water column are similar across all sites. The sediment record will reveal variations for processes that are water-depth dependent. We use the geochemical tracers; biogenic barium, phosphorus, calcium carbonate, and the redox sensitive trace elements manganese and uranium, to reconstruct nutrient burial, paleoproductivity, and bottom water redox chemistry across the Paleocene-Eocene Thermal Maximum (PETM). We calculate our concentrations on a calcium carbonate-free basis to account for dilution by non-carbonate sediments. Trace metal enrichment factors (EFs) are calculated relative to bulk crustal averages. We chose three sites from the depth transect: the shallowest (Site 1263, 2717 m water depth), an intermediate site (Site 1266, 3798 m water depth), and the deepest site (Site 1262, 4755 m water depth). We sampled each site at a sample resolution of ~ 1-2 kyr for 5 m.y. centered at 55 Ma. Uranium EFs at the shallow site exhibits values ~ 5 pre-event and drop to values near crustal averages during and after the carbon isotope excursion (CIE). No dramatic changes in U EFs across the P/E boundary are recorded at the deep and intermediate sites. Mn EFs range between 2.9 -8.6 prior to the event across all three sites, suggesting an oxygenated depositional environment. At the boundary, Mn EFs drop to crustal averages at all sites, then gradually return to pre-event values, indicating more reducing environments during the CIE, a possible explanation for the benthic extinction event (BEE) observed across this transect. Ba excess and reactive phosphorus exhibit decreased concentrations during the CIE with gradual return to pre-event values at the shallowest and deepest sites. We will compare the paleo-productivity and redox chemistry response at the Walvis Ridge sites across the PETM.

Visible light curing of Epon SU-8 based superparamagnetic polymer composites with random and ordered particle configurations.

PubMed

Peters, Christian; Ergeneman, Olgaç; Sotiriou, Georgios A; Choi, Hongsoo; Nelson, Bradley J; Hierold, Christofer

2015-01-14

The performance of superparamagnetic polymer composite microdevices is highly dependent on the magnetic particle content. While high loading levels are desired for many applications, the UV absorption of these nanoparticles limits the overall thickness of the fabricated microstructures and subsequently their capability of magnetic interaction. The combination of a visible-light-sensitive photoinitiator and particle self-organization is proposed to extend the exposure depth limitation in Epon SU-8 based superparamagnetic polymer composites. While superparamagnetic iron oxide particles strongly absorb i-line radiation required to cross-link the Epon SU-8 polymer matrix, we propose the utilization of H-Nu 470 photoinitiator to expand the photosensitivity of the composite toward the visible spectrum, where the dispersed nanoparticles are more transparent. The novel photoinitiator preserves the composite's superparamagnetic properties as well as a homogeneous particle distribution. As a result, particle load or resist thickness can be more than doubled while maintaining exposure time. The self-organization of ordered magnetic structures allows for an additional increase in exposure depth of up to 40%, resulting in a 2.5-fold saturation magnetization.

Depth profiling of marker layers using x-ray waveguide structures

NASA Astrophysics Data System (ADS)

Gupta, Ajay; Rajput, Parasmani; Saraiya, Amit; Reddy, V. R.; Gupta, Mukul; Bernstorff, Sigrid; Amenitsch, H.

2005-08-01

It is demonstrated that x-ray waveguide structures can be used for depth profiling of a marker layer inside the guiding layer with an accuracy of better than 0.2 nm. A combination of x-ray fluorescence and x-ray reflectivity measurements can provide detailed information about the structure of the guiding layer. The position and thickness of the marker layer affect different aspects of the angle-dependent x-ray fluorescence pattern, thus making it possible to determine the structure of the marker layer in an unambiguous manner. As an example, effects of swift heavy ion irradiation on a Si/M/Si trilayer ( M=Fe , W), forming the cavity of the waveguide structure, have been studied. It is found that in accordance with the prediction of thermal spike model, Fe is much more sensitive to swift heavy ion induced modifications as compared to W, even in thin film form. However, a clear evidence of movement of the Fe marker layer towards the surface is observed after irradiation, which cannot be understood in terms of the thermal spike model alone.

An evaluation method of the profile of plasma-induced defects based on capacitance-voltage measurement

NASA Astrophysics Data System (ADS)

Okada, Yukimasa; Ono, Kouichi; Eriguchi, Koji

2017-06-01

Aggressive shrinkage and geometrical transition to three-dimensional structures in metal-oxide-semiconductor field-effect transistors (MOSFETs) lead to potentially serious problems regarding plasma processing such as plasma-induced physical damage (PPD). For the precise control of material processing and future device designs, it is extremely important to clarify the depth and energy profiles of PPD. Conventional methods to estimate the PPD profile (e.g., wet etching) are time-consuming. In this study, we propose an advanced method using a simple capacitance-voltage (C-V) measurement. The method first assumes the depth and energy profiles of defects in Si substrates, and then optimizes the C-V curves. We applied this methodology to evaluate the defect generation in (100), (111), and (110) Si substrates. No orientation dependence was found regarding the surface-oxide layers, whereas a large number of defects was assigned in the case of (110). The damaged layer thickness and areal density were estimated. This method provides the highly sensitive PPD prediction indispensable for designing future low-damage plasma processes.

Quantitative Analysis of Microbicide Concentrations in Fluids, Gels and Tissues Using Confocal Raman Spectroscopy

PubMed Central

Chuchuen, Oranat; Henderson, Marcus H.; Sykes, Craig; Kim, Min Sung; Kashuba, Angela D. M.; Katz, David F.

2013-01-01

Topical vaginal anti-HIV microbicides are an important focus in female-based strategies to prevent the sexual transmission of HIV. Understanding microbicide pharmacokinetics is essential to development, characterization and implementation of efficacious microbicide drug delivery formulations. Current methods to measure drug concentrations in tissue (e.g., LC-MS/MS, liquid chromatography coupled with tandem mass spectrometry) are highly sensitive, but destructive and complex. This project explored the use of confocal Raman spectroscopy to detect microbicide drugs and to measure their local concentrations in fluids, drug delivery gels, and tissues. We evaluated three candidate microbicide drugs: tenofovir, Dapivirine and IQP-0528. Measurements were performed in freshly excised porcine buccal tissue specimens, gel vehicles and fluids using two Horiba Raman microscopes, one of which is confocal. Characteristic spectral peak calibrations for each drug were obtained using serial dilutions in the three matrices. These specific Raman bands demonstrated strong linear concentration dependences in the matrices and were characterized with respect to their unique vibrational signatures. At least one specific Raman feature was identified for each drug as a marker band for detection in tissue. Sensitivity of detection was evaluated in the three matrices. A specific peak was also identified for tenofovir diphosphate, the anti-HIV bioactive product of tenofovir after phosphorylation in host cells. Z-scans of drug concentrations vs. depth in excised tissue specimens, incubated under layers of tenofovir solution in a Transwell assay, showed decreasing concentration with depth from the surface into the tissue. Time-dependent concentration profiles were obtained from tissue samples incubated in the Transwell assay, for times ranging 30 minutes - 6 hours. Calibrations and measurements from tissue permeation studies for tenofovir showed good correlation with gold standard LC-MS/MS data. These results demonstrate that confocal Raman spectroscopy holds promise as a tool for practical, minimally invasive, label-free measurement of microbicide drug concentrations in fluids, gels and tissues. PMID:24386455

Tuning of successively scanned two monolithic Vernier-tuned lasers and selective data sampling in optical comb swept source optical coherence tomography

PubMed Central

Choi, Dong-hak; Yoshimura, Reiko; Ohbayashi, Kohji

2013-01-01

Monolithic Vernier tuned super-structure grating distributed Bragg reflector (SSG-DBR) lasers are expected to become one of the most promising sources for swept source optical coherence tomography (SS-OCT) with a long coherence length, reduced sensitivity roll-off, and potential capability for a very fast A-scan rate. However, previous implementations of the lasers suffer from four main problems: 1) frequencies deviate from the targeted values when scanned, 2) large amounts of noise appear associated with abrupt changes in injection currents, 3) optically aliased noise appears due to a long coherence length, and 4) the narrow wavelength coverage of a single chip limits resolution. We have developed a method of dynamical frequency tuning, a method of selective data sampling to eliminate current switching noise, an interferometer to reduce aliased noise, and an excess-noise-free connection of two serially scanned lasers to enhance resolution to solve these problems. An optical frequency comb SS-OCT system was achieved with a sensitivity of 124 dB and a dynamic range of 55-72 dB that depended on the depth at an A-scan rate of 3.1 kHz with a resolution of 15 μm by discretely scanning two SSG-DBR lasers, i.e., L-band (1.560-1.599 μm) and UL-band (1.598-1.640 μm). A few OCT images with excellent image penetration depth were obtained. PMID:24409394

Damage to photosystem II in symbiotic dinoflagellates: a determinant of coral bleaching.

PubMed

Warner, M E; Fitt, W K; Schmidt, G W

1999-07-06

Coral bleaching has been defined as a general phenomenon, whereby reef corals turn visibly pale because of the loss of their symbiotic dinoflagellates and/or algal pigments during periods of exposure to elevated seawater temperatures. During the summer of 1997, seawater temperatures in the Florida Keys remained at or above 30 degrees C for more than 6 weeks, and extensive coral bleaching was observed. Bleached colonies of the dominant Caribbean reef-building species, Montastrea faveolata and Montastrea franksi, were sampled over a depth gradient from 1 to 17 m during this period of elevated temperature and contained lower densities of symbiotic dinoflagellates in deeper corals than seen in previous "nonbleaching" years. Fluorescence analysis by pulse-amplitude modulation fluorometry revealed severe damage to photosystem II (PSII) in remaining symbionts within the corals, with greater damage indicated at deeper depths. Dinoflagellates with the greatest loss in PSII activity also showed a significant decline in the D1 reaction center protein of PSII, as measured by immunoblot analysis. Laboratory experiments on the temperature-sensitive species Montastrea annularis, as well as temperature-sensitive and temperature-tolerant cultured symbiotic dinoflagellates, confirmed the temperature-dependent loss of PSII activity and concomitant decrease in D1 reaction center protein seen in symbionts collected from corals naturally bleached on the reef. In addition, variation in PSII repair was detected, indicating that perturbation of PSII protein turnover rates during photoinhibition at elevated temperatures underlies the physiological collapse of symbionts in corals susceptible to heat-induced bleaching.

Commissioning a p-type silicon diode for use in clinical electron beams.

PubMed

Eveling, J N; Morgan, A M; Pitchford, W G

1999-01-01

Commissioning measurements were carried out on a p-type silicon diode detector for use in patient monitoring in high energy electron beams. Characteristics specific to the diode were examined. The variation in diode sensitivity with dose per pulse was found to be less than 1% over a range 0.069-0.237 mGy/pulse. The diode exhibited a sensitivity variation with accumulated dose of 10% per kGy and a sensitivity variation with surface temperature of 0.26%/degree C. The dependence of the diode response on the direction of the incident electron beam was investigated. Results were found to exceed the manufacturer's specifications. Output factors measured with the diode agree to within 1.5% of those measured with an NACP-02 air ionization chamber. The detector showed a variation in response with energy of 0.8% over the energy range 4-15 MeV. Prior to introducing the diode into clinical use, an assessment of beam perturbation directly behind the diode was made. The maximum reduction in local dose directly behind the diode at a depth of 1.0 cm below the surface was approximately 13% at 4 and 15 MeV.

Helioseismic Constraints on the Depth Dependence of Large-Scale Solar Convection

NASA Astrophysics Data System (ADS)

Woodard, Martin F.

2017-08-01

A recent helioseismic statistical waveform analysis of subsurface flow based on a 720-day time series of SOHO/MDI Medium-l spherical-harmonic coefficients has been extended to cover a greater range of subphotospheric depths. The latest analysis provides estimates of flow-dependent oscillation-mode coupling-strength coefficients b(s,t;n,l) over the range l = 30 to 150 of mode degree (angular wavenumber) for solar p-modes in the approximate frequency range 2 to 4 mHz. The range of penetration depths of this mode set covers most of the solar convection zone. The most recent analysis measures spherical harmonic (s,t) components of the flow velocity for odd s in the angular wavenumber range 1 to 19 for t not much smaller than s at a given s. The odd-s b(s,t;n,l) coefficients are interpreted as averages over depth of the depth-dependent amplitude of one spherical-harmonic (s,t) component of the toroidal part of the flow velocity field. The depth-dependent weighting function defining the average velocity is the fractional kinetic energy density in radius of modes of the (n,l) multiplet. The b coefficients have been converted to estimates of root velocity power as a function of l0 = nu0*l/nu(n,l), which is a measure of mode penetration depth. (nu(n,l) is mode frequency and nu0 is a reference frequency equal to 3 mHz.) A comparison of the observational results with simple convection models will be presented.

Subduction zone seismicity and the thermo-mechanical evolution of downgoing lithosphere

NASA Astrophysics Data System (ADS)

Wortel, M. J. R.; Vlaar, N. J.

1988-09-01

In this paper we discuss characteristic features of subduction zone seismicity at depths between about 100 km and 700 km, with emphasis on the role of temperature and rheology in controlling the deformation of, and the seismic energy release in downgoing lithosphere. This is done in two steps. After a brief review of earlier developments, we first show that the depth distribution of hypocentres at depths between 100 km and 700 km in subducted lithosphere can be explained by a model in which seismic activity is confined to those parts of the slab which have temperatures below a depth-dependent critical value T cr. Second, the variation of seismic energy release (frequency of events, magnitude) with depth is addressed by inferring a rheological evolution from the slab's thermal evolution and by combining this with models for the system of forces acting on the subducting lithosphere. It is found that considerable stress concentration occurs in a reheating slab in the depth range of 400 to 650 700 km: the slab weakens, but the stress level strongly increases. On the basis of this stress concentration a model is formulated for earthquake generation within subducting slabs. The model predicts a maximum depth of seismic activity in the depth range of 635 to 760 km and, for deep earthquake zones, a relative maximum in seismic energy release near the maximum depth of earthquakes. From our modelling it follows that, whereas such a maximum is indeed likely to develop in deep earthquake zones, zones with a maximum depth around 300 km (such as the Aleutians) are expected to exhibit a smooth decay in seismic energy release with depth. This is in excellent agreement with observational data. In conclusion, the incoroporation of both depth-dependent forces and depth-dependent rheology provides new insight into the generation of intermediate and deep earthquakes and into the variation of seismic activity with depth. Our results imply that no barrier to slab penetration at a depth of 650 700 km is required to explain the maximum depth of seismic activity and the pattern of seismic energy release in deep earthquake zones.

Is colour modulation an independent factor in human visual photosensitivity?

PubMed

Parra, Jaime; Lopes da Silva, Fernando H; Stroink, Hans; Kalitzin, Stiliyan

2007-06-01

Considering that the role of colour in photosensitive epilepsy (PSE) remains unclear, we designed a study to determine the potential of different colours, colour combinations and white light to trigger photoparoxysmal responses (PPRs) under stringent controlled conditions. After assessing their photosensitivity to stroboscopic white light and black and white patterns, we studied 43 consecutive PSE patients (mean age 19 years, 34 women), using a specially designed colour stimulator. Stimuli included: pulse trains between 10 and 30 Hz of white light and of all primary colours, and also isoluminant alternating time-sequences of colours. Illuminance was kept constant at 100 lux. A progressive stepwise increase of the modulation-depth (MD) of the stimuli was used to determine PPRs threshold. Whereas all the 43 patients were found to be sensitive during the stroboscopic and pattern protocol, only 25 showed PPRs (Waltz's score >2) at least in one session when studied with the colour stimulator. Coloured stimuli elicited PPRs in all these patients, whereas white light did so only in 17 patients. Of the primary colours, red elicited more PPRs (54 in 22 patients) and at a lower MD (max Z-score 0.93 at 10 Hz). Of the alternating sequences, the red-blue was the most provocative stimulus, especially below 30 Hz (100% of patients, max Z-score: 1.65 at 15 Hz). Blue-green was the least provocative stimulus, since it elicited only seven PPRs in seven (28%) patients (max Z-score 0.44 at 10 Hz). Sensitivity to alternating colours was not correlated to sensitivity to individual colours. We conclude that colour sensitivity follows two different mechanisms: one, dependent on colour modulation, plays a role at lower frequencies (<30 Hz). Another, dependent on single-colour light intensity modulation correlates to white light sensitivity and is activated at higher frequencies. Our results suggest that the prescription of spectacles with coloured lenses, tailored to the patient, can be an effective preventative measure against visually induced seizures.

An energy- and depth-dependent model for x-ray imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gallas, Brandon D.; Boswell, Jonathan S.; Badano, Aldo

In this paper, we model an x-ray imaging system, paying special attention to the energy- and depth-dependent characteristics of the inputs and interactions: x rays are polychromatic, interaction depth and conversion to optical photons is energy-dependent, optical scattering and the collection efficiency depend on the depth of interaction. The model we construct is a random function of the point process that begins with the distribution of x rays incident on the phosphor and ends with optical photons being detected by the active area of detector pixels to form an image. We show how the point-process representation can be used tomore » calculate the characteristic statistics of the model. We then simulate a Gd{sub 2}O{sub 2}S:Tb phosphor, estimate its characteristic statistics, and proceed with a signal-detection experiment to investigate the impact of the pixel fill factor on detecting spherical calcifications (the signal). The two extremes possible from this experiment are that SNR{sup 2} does not change with fill factor or changes in proportion to fill factor. In our results, the impact of fill factor is between these extremes, and depends on the diameter of the signal.« less

Variability in snow-depth time series within the Adige catchment

NASA Astrophysics Data System (ADS)

Marcolini, Giorgia; Bellin, Alberto; Disse, Markus; Gabriele, Chiogna

2017-04-01

Snow cover extension and duration is particularly sensitive to climate change because strongly influenced by changes in temperature and precipitation. It affects the hydrological cycle of Alpine catchments as well as many other aspects of life in mountainous regions, such as ecosystem functioning and economy. Despite its relevance, variability in snow related parameters has not been investigated in the Southern side of the Alps as extensively as in the Northern side of the Alps. In this work, we investigate the temporal variability of mean seasonal snow depth (computed by averaging the daily snow depth in the period 1 November-30 April between two following years) and of snow cover duration (defined, similarly, as the number of days in the period 1 November-30 April with snow depth higher than 30 cm) for the homogeneous stations within the Adige catchment (North-East Italy) by using wavelets transform. We focus our analysis on the period 1980-2010, which with 37 time series is the richest of data and we group the stations in four elevation classes (below 1350 m a.s.l., between 1350 m a.s.l. and 1650 m a.s.l., between 1650 m a.s.l. and 2000 m a.s.l. and above 2000 m a.s.l.). Stations located above and below 1650 m a.s.l. show different behaviors, with the latter showing in the last decades a larger reduction of mean seasonal snow depth and snow cover duration, than the former. We also observe that starting from the late '80s snow cover duration and mean seasonal snow depth display values below the average in the study area, confirming the observations performed in other regions of the Alps. We also find an elevation-dependent correlation between the increase in winter teperature and snow cover extension and duration.

Sensitivity to sequencing depth in single-cell cancer genomics.

PubMed

Alves, João M; Posada, David

2018-04-16

Querying cancer genomes at single-cell resolution is expected to provide a powerful framework to understand in detail the dynamics of cancer evolution. However, given the high costs currently associated with single-cell sequencing, together with the inevitable technical noise arising from single-cell genome amplification, cost-effective strategies that maximize the quality of single-cell data are critically needed. Taking advantage of previously published single-cell whole-genome and whole-exome cancer datasets, we studied the impact of sequencing depth and sampling effort towards single-cell variant detection. Five single-cell whole-genome and whole-exome cancer datasets were independently downscaled to 25, 10, 5, and 1× sequencing depth. For each depth level, ten technical replicates were generated, resulting in a total of 6280 single-cell BAM files. The sensitivity of variant detection, including structural and driver mutations, genotyping, clonal inference, and phylogenetic reconstruction to sequencing depth was evaluated using recent tools specifically designed for single-cell data. Altogether, our results suggest that for relatively large sample sizes (25 or more cells) sequencing single tumor cells at depths > 5× does not drastically improve somatic variant discovery, characterization of clonal genotypes, or estimation of single-cell phylogenies. We suggest that sequencing multiple individual tumor cells at a modest depth represents an effective alternative to explore the mutational landscape and clonal evolutionary patterns of cancer genomes.

Constraining the low-cloud optical depth feedback at middle and high latitudes using satellite observations

DOE PAGES

Terai, C. R.; Klein, S. A.; Zelinka, M. D.

2016-08-26

The increase in cloud optical depth with warming at middle and high latitudes is a robust cloud feedback response found across all climate models. This study builds on results that suggest the optical depth response to temperature is timescale invariant for low-level clouds. The timescale invariance allows one to use satellite observations to constrain the models' optical depth feedbacks. Three passive-sensor satellite retrievals are compared against simulations from eight models from the Atmosphere Model Intercomparison Project (AMIP) of the 5th Coupled Model Intercomparison Project (CMIP5). This study confirms that the low-cloud optical depth response is timescale invariant in the AMIPmore » simulations, generally at latitudes higher than 40°. Compared to satellite estimates, most models overestimate the increase in optical depth with warming at the monthly and interannual timescales. Many models also do not capture the increase in optical depth with estimated inversion strength that is found in all three satellite observations and in previous studies. The discrepancy between models and satellites exists in both hemispheres and in most months of the year. A simple replacement of the models' optical depth sensitivities with the satellites' sensitivities reduces the negative shortwave cloud feedback by at least 50% in the 40°–70°S latitude band and by at least 65% in the 40°–70°N latitude band. Furthermore, based on this analysis of satellite observations, we conclude that the low-cloud optical depth feedback at middle and high latitudes is likely too negative in climate models.« less

Constraining the low-cloud optical depth feedback at middle and high latitudes using satellite observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terai, C. R.; Klein, S. A.; Zelinka, M. D.

The increase in cloud optical depth with warming at middle and high latitudes is a robust cloud feedback response found across all climate models. This study builds on results that suggest the optical depth response to temperature is timescale invariant for low-level clouds. The timescale invariance allows one to use satellite observations to constrain the models' optical depth feedbacks. Three passive-sensor satellite retrievals are compared against simulations from eight models from the Atmosphere Model Intercomparison Project (AMIP) of the 5th Coupled Model Intercomparison Project (CMIP5). This study confirms that the low-cloud optical depth response is timescale invariant in the AMIPmore » simulations, generally at latitudes higher than 40°. Compared to satellite estimates, most models overestimate the increase in optical depth with warming at the monthly and interannual timescales. Many models also do not capture the increase in optical depth with estimated inversion strength that is found in all three satellite observations and in previous studies. The discrepancy between models and satellites exists in both hemispheres and in most months of the year. A simple replacement of the models' optical depth sensitivities with the satellites' sensitivities reduces the negative shortwave cloud feedback by at least 50% in the 40°–70°S latitude band and by at least 65% in the 40°–70°N latitude band. Furthermore, based on this analysis of satellite observations, we conclude that the low-cloud optical depth feedback at middle and high latitudes is likely too negative in climate models.« less

Crack depth profiling using guided wave angle dependent reflectivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Volker, Arno, E-mail: arno.volker@tno.nl; Pahlavan, Lotfollah, E-mail: arno.volker@tno.nl; Blacquiere, Gerrit, E-mail: arno.volker@tno.nl

2015-03-31

Tomographic corrosion monitoring techniques have been developed, using two rings of sensors around the circumference of a pipe. This technique is capable of providing a detailed wall thickness map, however this might not be the only type of structural damage. Therefore this concept is expanded to detect and size cracks and small corrosion defects like root corrosion. The expanded concept uses two arrays of guided-wave transducers, collecting both reflection and transmission data. The data is processed such that the angle-dependent reflectivity is obtained without using a baseline signal of a defect-free situation. The angle-dependent reflectivity is the input of anmore » inversion scheme that calculates a crack depth profile. From this profile, the depth and length of the crack can be determined. Preliminary experiments show encouraging results. The depth sizing accuracy is in the order of 0.5 mm.« less

High-sensitivity aeromagnetic survey of the US Atlantic continental margin.

USGS Publications Warehouse

Behrendt, John C.; Klitgord, Kim D.

1980-01-01

The US Geological Survey contracted a high-sensitivity, digital aeromagnetic survey that was flown over the US Atlantic continental margin over a period of 15 months between 1974 and 1976. The 185 000 km of profile data have a relative accuracy approaching a few tenths of a nanotesla, which allowed compilation into maps at a scale of 1:250 000, with a contour interval of 2 nT. Automatic data processing using the Werner method allowed calculations of apparent depth to sources of the magnetic anomalies on all of the profiles, assuming a dike or interface as a source. Comparison of the computed depths to magnetic basement with multichannel seismic profiles across the survey area helped to reduce ambiguities in magnetic depth estimates and enabled interpolation of basement structures between seismic profiles. The resulting map showing depth to basement of the Atlantic continental margin is compatible with available multichannel seismic data, and we consider it a reasonable representation of the base of the sedimentary column. -Authors

Long range surface plasmon resonance with ultra-high penetration depth for self-referenced sensing and ultra-low detection limit using diverging beam approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Isaacs, Sivan, E-mail: sivan.isaacs@gmail.com; Abdulhalim, Ibrahim; NEW CREATE Programme, School of Materials Science and Engineering, 1 CREATE Way, Research Wing, #02-06/08, Singapore 138602

2015-05-11

Using an insulator-metal-insulator structure with dielectric having refractive index (RI) larger than the analyte, long range surface plasmon (SP) resonance exhibiting ultra-high penetration depth is demonstrated for sensing applications of large bioentities at wavelengths in the visible range. Based on the diverging beam approach in Kretschmann-Raether configuration, one of the SP resonances is shown to shift in response to changes in the analyte RI while the other is fixed; thus, it can be used as a built in reference. The combination of the high sensitivity, high penetration depth and self-reference using the diverging beam approach in which a dark linemore » is detected of the high sensitivity, high penetration depth, self-reference, and the diverging beam approach in which a dark line is detected using large number of camera pixels with a smart algorithm for sub-pixel resolution, a sensor with ultra-low detection limit is demonstrated suitable for large bioentities.« less

Active microwave measurement of soil water content

NASA Technical Reports Server (NTRS)

Ulaby, F. T.; Cihlar, J.; Moore, R. K.

1974-01-01

Measurements of radar backscatter from bare soil at 4.7, 5.9, and 7.1 GHz for incident angles of 0-70 deg have been analyzed to determine sensitivity to soil moisture. Because the effective depth of penetration of the radar signal is only about one skin depth, the observed signals were correlated with the moisture in a skin depth as characterized by the attenuation coefficient (reciprocal of skin depth). Since the attenuation coefficient is a monotonically increasing function of moisture density, it may also be used as a measure of moisture content over the distance involved, which varies with frequency and moisture content. The measurements show an approximately linear increase in scattering with attenuation coefficient of the soil at angles within 10 deg of vertical and all frequencies. At 4.7 GHz this increase continues relatively large out to 70 deg incidence, but by 7.1 GHz the sensitivity is much less even at 20 deg and practically gone at 50 deg.

The effects of simulated solar UVB radiation on early developmental stages of the Northwestern Salamander (Ambystoma gracile) from three lakes

USGS Publications Warehouse

Calfee, Robin D.; Little, Edward E.; Pearl, Christopher A.; Hoffman, Robert L.

2010-01-01

Solar ultraviolet radiation (UV) has received much attention as a factor that could play a role in amphibian population declines. UV can be hazardous to some amphibians, but the resultant effects depend on a variety of environmental and behavioral factors. In this study, the potential effects of UV on the Northwestern Salamander, Ambystoma gracile, from three lakes were assessed in the laboratory using a solar simulator. We measured the survival of embryos and the survival and growth of larvae exposed to four UV treatments in controlled laboratory studies, the UV absorbance of egg jelly, oviposition depths in the lakes, and UV absorbance in water samples from the three lakes. Hatching success of embryos decreased in the higher UV treatments as compared to the control treatments, and growth of surviving larvae was significantly reduced in the higher UVB irradiance treatments. The egg jelly exhibited a small peak of absorbance within the UVB range (290–320 nm). The magnitude of UV absorbance differed among egg jellies from the three lakes. Oviposition depths at the three sites averaged 1.10 m below the water surface. Approximately 66% of surface UVB radiation was attenuated at 10-cm depth in all three lakes. Results of this study indicate that larvae may be sensitive to UVB exposure under laboratory conditions; however, in field conditions the depths of egg deposition in the lakes, absorbance of UV radiation by the water column, and the potential for behavioral adjustments may mitigate severe effects of UV radiation.

Effects of simulated solar UVB radiation on early developmental stages of the northwestern salamander (Ambystoma gracile) from three lakes

USGS Publications Warehouse

Calfee, R.D.; Little, E.E.; Pearl, C.A.; Hoffman, R.L.

2010-01-01

Solar ultraviolet radiation (UV) has received much attention as a factor that could play a role in amphibian population declines. UV can be hazardous to some amphibians, but the resultant effects depend on a variety of environmental and behavioral factors. In this study, the potential effects of UV on the Northwestern Salamander, Ambystoma gracile, from three lakes were assessed in the laboratory using a solar simulator. We measured the survival of embryos and the survival and growth of larvae exposed to four UV treatments in controlled laboratory studies, the UV absorbance of egg jelly, oviposition depths in the lakes, and UV absorbance in water samples from the three lakes. Hatching success of embryos decreased in the higher UV treatments as compared to the control treatments, and growth of surviving larvae was significantly reduced in the higher UVB irradiance treatments. The egg jelly exhibited a small peak of absorbance within the UVB range (290-320 nm). The magnitude of UV absorbance differed among egg jellies from the three lakes. Oviposition depths at the three sites averaged 1.10 m below the water surface. Approximately 66 of surface UVB radiation was attenuated at 10-cm depth in all three lakes. Results of this study indicate that larvae may be sensitive to UVB exposure under laboratory conditions; however, in field conditions the depths of egg deposition in the lakes, absorbance of UV radiation by the water column, and the potential for behavioral adjustments may mitigate severe effects of UV radiation. Copyright 2010 Society for the Study of Amphibians and Reptiles.

How sensitivity to ongoing interaural temporal disparities is affected by manipulations of temporal features of the envelopes of high-frequency stimuli

PubMed Central

Bernstein, Leslie R.; Trahiotis, Constantine

2009-01-01

This study addressed how manipulating certain aspects of the envelopes of high-frequency stimuli affects sensitivity to envelope-based interaural temporal disparities (ITDs). Listener’s threshold ITDs were measured using an adaptive two-alternative paradigm employing “raised-sine” stimuli [John, M. S., et al. (2002). Ear Hear. 23, 106–117] which permit independent variation in their modulation frequency, modulation depth, and modulation exponent. Threshold ITDs were measured while manipulating modulation exponent for stimuli having modulation frequencies between 32 and 256 Hz. The results indicated that graded increases in the exponent led to graded decreases in envelope-based threshold ITDs. Threshold ITDs were also measured while parametrically varying modulation exponent and modulation depth. Overall, threshold ITDs decreased with increases in the modulation depth. Unexpectedly, increases in the exponent of the raised-sine led to especially large decreases in threshold ITD when the modulation depth was low. An interaural correlation-based model was generally able to capture changes in threshold ITD stemming from changes in the exponent, depth of modulation, and frequency of modulation of the raised-sine stimuli. The model (and several variations of it), however, could not account for the unexpected interaction between the value of raised-sine exponent and its modulation depth. PMID:19425666

Finite-frequency sensitivity kernels for head waves

NASA Astrophysics Data System (ADS)

Zhang, Zhigang; Shen, Yang; Zhao, Li

2007-11-01

Head waves are extremely important in determining the structure of the predominantly layered Earth. While several recent studies have shown the diffractive nature and the 3-D Fréchet kernels of finite-frequency turning waves, analogues of head waves in a continuous velocity structure, the finite-frequency effects and sensitivity kernels of head waves are yet to be carefully examined. We present the results of a numerical study focusing on the finite-frequency effects of head waves. Our model has a low-velocity layer over a high-velocity half-space and a cylindrical-shaped velocity perturbation placed beneath the interface at different locations. A 3-D finite-difference method is used to calculate synthetic waveforms. Traveltime and amplitude anomalies are measured by the cross-correlation of synthetic seismograms from models with and without the velocity perturbation and are compared to the 3-D sensitivity kernels constructed from full waveform simulations. The results show that the head wave arrival-time and amplitude are influenced by the velocity structure surrounding the ray path in a pattern that is consistent with the Fresnel zones. Unlike the `banana-doughnut' traveltime sensitivity kernels of turning waves, the traveltime sensitivity of the head wave along the ray path below the interface is weak, but non-zero. Below the ray path, the traveltime sensitivity reaches the maximum (absolute value) at a depth that depends on the wavelength and propagation distance. The sensitivity kernels vary with the vertical velocity gradient in the lower layer, but the variation is relatively small at short propagation distances when the vertical velocity gradient is within the range of the commonly accepted values. Finally, the depression or shoaling of the interface results in increased or decreased sensitivities, respectively, beneath the interface topography.

The prototype nuclear Compton telescope: Observations of the Galactic Anticenter region

NASA Astrophysics Data System (ADS)

Bowen, Jason Dione

Observations of the Galactic Anticenter region and atmospheric 511 keV positron annihilation emission have been performed with a prototype of the Nuclear Compton Telescope (NCT) during a high altitude balloon flight on June 1, 2005 from Ft. Sumner, NM. NCT is a balloon-borne soft gamma-ray (0.2 MeV to 10 MeV) germanium Compton telescope (GCT) designed to study astrophysical sources of nuclear line emission and polarization through spectroscopy and imaging. A prototype instrument was successfully launched from Ft. Sumner, NM on June 1, 2005. The NCT prototype consists of two 3D position-sensitive high purity germanium strip detectors (GeDs). The compact design and new technologies allow NCT to achieve high efficiencies with excellent spectral resolution and background reduction. The GeDs are custom 15 mm thick cross-strip detectors each with an active area of 54 cm 2 and are enclosed in an aluminum cryostat capable of supporting up to 12 detectors. Here is presented a detailed study of approximately 8 hours of background measurements made from 890 g/cm 2 (1265 m ) to an average float altitude of 3.0 g/cm 2 (40 km ), with particular emphasis on float observations. A total of 6 hr 9 min of observation time was acquired at float, while the duration of the ascent portion of the flight included in this study was 2 hr. The expected contributions to the background are discussed, especially in light of detailed Monte Carlo simulations modeling the entire flight and incorporating complete depth dependent environmental inputs, including 4 cosmic components (protons, photons, electrons, and positrons) and 8 atmospheric components (photons, atmospheric 511 keV emission, neutrons, protons, electrons, positrons, and muons). The results of these investigations include the component makeup of the total background as a function of atmospheric depth, and the contribution of delayed emission due to neutron and proton activation of passive materials. At 1 MeV photons emitted following delayed neutron induced reactions comprise ~ 15% of the total background at small depths. The observed background due to this component is a result of Compton scattering of 1.779 MeV ( 29 Al, t 1/2 = 2.24 min ) photons out of the instrument following neutron capture by 28 Al nuclei. The sources of these photons are the substantial amount of aluminum materials surrounding the instrument. Studies of nuclear line emission require accurate energy calibrations. The NCT prototype consists of two 3D position-sensitive GeDs with 2 × 37 × 37 orthogonal strips for energy measurements. Each strip requires a unique energy calibration. For the electrodes under high voltage (-800 V ) the collected charge is dependent on interaction depth, with charge losses in transit presumably due to trapping and/or recombination. The measured electron trapping lengths for the two GeDs are 1264 cm and 930.3 cm , and the measured hole trapping lengths are 1149.2 cm and 847.3 cm , respectively. The total energy loss at 662 keV approaches 0.1%. Additional losses of up to 0.4% occur at the detector surfaces containing the low voltage electrodes. The positron annihilation line has been observed as a function of atmospheric depth. Simulations suggest contributions to this line from b + -decay and pair production in passive materials are negligible at all depths, and that the line fraction due to positron annihilation in passive materials varies approximately linearly with depth: at large depths (> 700 g cm -2 ) the fraction is > 50% and for depths < 5 g cm -2 the contribution is less than 0.3%. A major result of these studies is that essentially all of the 511 keV line measurements at float are due to atmospheric emissions. At an average float altitude of 2.9 g cm - 2 the vertical atmospheric annihilation line flux measured by the prototype Nuclear Compton Telescope is 3.5 × 10^-2 ( cm 2 s sr keV ) -1 . Images of 511 keV emission at float altitudes are presented. The Galactic Anticenter Region was observed in nine continuum energy bands from 100 keV to 1.5 MeV. Received fluxes from the Crab Nebula are at the sensitivity threshold of the NCT prototype for this flight. 3 s upper limits for the 100- 200, 150-450, 200-600, 250-750, 300-900, 350-1050, 400-1200, 450-1350, and 500- 1500 keV bands are 8.9, 4.9, 3.2, 5.3, 3.1, 4.0, 3.8, 4.7, and 4.7 × 10^-2 cm - 2 s -1 , respectively.

Depth-resolved ultra-violet spectroscopic photo current-voltage measurements for the analysis of AlGaN/GaN high electron mobility transistor epilayer deposited on Si

NASA Astrophysics Data System (ADS)

Ozden, Burcu; Yang, Chungman; Tong, Fei; Khanal, Min P.; Mirkhani, Vahid; Sk, Mobbassar Hassan; Ahyi, Ayayi Claude; Park, Minseo

2014-10-01

We have demonstrated that the depth-dependent defect distribution of the deep level traps in the AlGaN/GaN high electron mobility transistor (HEMT) epi-structures can be analyzed by using the depth-resolved ultra-violet (UV) spectroscopic photo current-voltage (IV) (DR-UV-SPIV). It is of great importance to analyze deep level defects in the AlGaN/GaN HEMT structure, since it is recognized that deep level defects are the main source for causing current collapse phenomena leading to reduced device reliability. The AlGaN/GaN HEMT epi-layers were grown on a 6 in. Si wafer by metal-organic chemical vapor deposition. The DR-UV-SPIV measurement was performed using a monochromatized UV light illumination from a Xe lamp. The key strength of the DR-UV-SPIV is its ability to provide information on the depth-dependent electrically active defect distribution along the epi-layer growth direction. The DR-UV-SPIV data showed variations in the depth-dependent defect distribution across the wafer. As a result, rapid feedback on the depth-dependent electrical homogeneity of the electrically active defect distribution in the AlGaN/GaN HEMT epi-structure grown on a Si wafer with minimal sample preparation can be elucidated from the DR-UV-SPIV in combination with our previously demonstrated spectroscopic photo-IV measurement with the sub-bandgap excitation.

Axial resolution improvement in spectral domain optical coherence tomography using a depth-adaptive maximum-a-posterior framework

NASA Astrophysics Data System (ADS)

Boroomand, Ameneh; Tan, Bingyao; Wong, Alexander; Bizheva, Kostadinka

2015-03-01

The axial resolution of Spectral Domain Optical Coherence Tomography (SD-OCT) images degrades with scanning depth due to the limited number of pixels and the pixel size of the camera, any aberrations in the spectrometer optics and wavelength dependent scattering and absorption in the imaged object [1]. Here we propose a novel algorithm which compensates for the blurring effect of these factors of the depth-dependent axial Point Spread Function (PSF) in SDOCT images. The proposed method is based on a Maximum A Posteriori (MAP) reconstruction framework which takes advantage of a Stochastic Fully Connected Conditional Random Field (SFCRF) model. The aim is to compensate for the depth-dependent axial blur in SD-OCT images and simultaneously suppress the speckle noise which is inherent to all OCT images. Applying the proposed depth-dependent axial resolution enhancement technique to an OCT image of cucumber considerably improved the axial resolution of the image especially at higher imaging depths and allowed for better visualization of cellular membrane and nuclei. Comparing the result of our proposed method with the conventional Lucy-Richardson deconvolution algorithm clearly demonstrates the efficiency of our proposed technique in better visualization and preservation of fine details and structures in the imaged sample, as well as better speckle noise suppression. This illustrates the potential usefulness of our proposed technique as a suitable replacement for the hardware approaches which are often very costly and complicated.

First-principles study of stability of helium-vacancy complexes below tungsten surfaces

NASA Astrophysics Data System (ADS)

Yang, L.; Bergstrom, Z. J.; Wirth, B. D.

2018-05-01

Density function theory calculations have been performed to study the stability of small helium-vacancy (He-V) complexes near tungsten (W) surfaces of different orientations. The results show that the stability of vacancies and He-V complexes near W surfaces depends on surface orientation. However, as the depth below the surface increased beyond about 0.65-0.8 nm, the stability of He-V complexes is similar to the bulk. The formation energies of single vacancies and di-vacancies at depths less than 0.2 nm below the W(110) surface are higher than for W(100) or W(111) surfaces, but have lower energies at depths between 0.2 and 0.65 nm. The formation energies of He-V complexes below W surfaces are sensitive to the geometric orientation of the He and vacancy, especially below the W(111) surface. Within about 0.2 nm of the top layer of the three W surfaces, neither a vacancy nor a di-vacancy can trap He. Because of the lower formation energy of He-V complexes and higher He binding energy to vacancies below the W(110) surface, the He desorption from the W(110) surface is less likely to occur than from the W(100) and W(111) surfaces. Our results provide fundamental insight into the differences in surface morphology changes observed in single W crystals with different surface orientations under He plasma exposure.

Bottom Penetration at Shallow Grazing Angles II

DTIC Science & Technology

1992-06-19

Millwater , "Wave Reflection from a Sediment Layer with Depth-Dependent Properties," J. Acoust. Soc. Am. 77, 1781- 1788 (1985). 35 8. N. P. Chotiros, ’High...Acoust. Soc. Am. 8B1 S131 (1990). 12. M. Stern, A. Bedford, and H. R. Millwater , "Wave Reflection from a Sediment Layer with Depth-Dependent

Intermediate type excitons in Schottky barriers of A3B6 layer semiconductors and UV photodetectors

NASA Astrophysics Data System (ADS)

Alekperov, O. Z.; Guseinov, N. M.; Nadjafov, A. I.

2006-09-01

Photoelectric and photovoltaic spectra of Schottky barrier (SB) structures of InSe, GaSe and GaS layered semiconductors (LS) are investigated at quantum energies from the band edge excitons of corresponding materials up to 6.5eV. Spectral dependences of photoconductivity (PC) of photo resistors and barrier structures are strongly different at the quantum energies corresponding to the intermediate type excitons (ITE) observed in these semiconductors. It was suggested that high UV photoconductivity of A3B6 LS is due to existence of high mobility light carriers in the depth of the band structure. It is shown that SB of semitransparent Au-InSe is high sensitive photo detector in UV region of spectra.

The Use of Inhibitors of Mechanosensitive Ion Channels as Local Inhibitors of Peripheral Pain

DTIC Science & Technology

2015-01-01

in the medical care of soldiers and veterans, whether in acute or chronic injury. Current analgesics, while effective, suffer from a potential for... potential  of ‐60 mV. Panel B is a dose‐response  curve of mechanical sensitivity with increasing depths of penetration producing more current.  Panel C is...emphasizes that the channels couple mechanical stress to membrane  potential  in time dependent ways. Panel D is an IV  curve derived from the cell‐attached

Depth estimation of multi-layered impact damage in PMC using lateral thermography

NASA Astrophysics Data System (ADS)

Whitlow, Travis; Kramb, Victoria; Reibel, Rick; Dierken, Josiah

2018-04-01

Characterization of impact damage in polymer matrix composites (PMCs) continues to be a challenge due to the complex internal structure of the material. Nondestructive characterization approaches such as normal incident immersion ultrasound and flash thermography are sensitive to delamination damage, but do not provide information regarding damage obscured by the delaminations. Characterization of material state below a delamination requires a technique which is sensitive to in-plane damage modes such as matrix cracking and fiber breakage. Previous studies of the lateral heat flow through a composite laminate showed that the diffusion time was sensitive to the depth of the simulated damage zone. The current study will further evaluate the lateral diffusion model to provide sensitivity limits for the modeled flaw dimensions. Comparisons between the model simulations and experimental data obtained using a concentrated heat source and machined targets will also be presented.

Rotational and Translational Components of Motion Parallax: Observers' Sensitivity and Implications for Three-Dimensional Computer Graphics

NASA Technical Reports Server (NTRS)

Kaiser, Mary K.; Montegut, Michael J.; Proffitt, Dennis R.

1995-01-01

The motion of objects during motion parallax can be decomposed into 2 observer-relative components: translation and rotation. The depth ratio of objects in the visual field is specified by the inverse ratio of their angular displacement (from translation) or equivalently by the inverse ratio of their rotations. Despite the equal mathematical status of these 2 information sources, it was predicted that observers would be far more sensitive to the translational than rotational component. Such a differential sensitivity is implicitly assumed by the computer graphics technique billboarding, in which 3-dimensional (3-D) objects are drawn as planar forms (i.e., billboards) maintained normal to the line of sight. In 3 experiments, observers were found to be consistently less sensitive to rotational anomalies. The implications of these findings for kinetic depth effect displays and billboarding techniques are discussed.

Low Insertion Loss and Highly Sensitive SH-SAW Sensors Based on 36° YX LiTaO 3 Through the Incorporation of Filled Microcavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Richardson, Mandek; Sankaranarayanan, Subramanian K. R. S.; Bhethanabotla, Venkat R.

2015-02-01

Reduction in power consumption and improvement in mass sensitivity are important considerations for surface acoustic wave (SAW) devices used in various sensing applications. Detection of minute quantities of a particular species (clinical sensing) and power requirements (wireless sensing) are two key metrics that must be optimized. In this paper, a 3-D finite element model (FEM) was employed to compare insertion loss (IL) and mass sensitivity of SAW sensors having microcavities filled with ZnO and nanocrystalline diamond to a standard two-port SAW design. Initial simulation results show that ZnO filled cavities (depth = 5 mu m) were most effective at reducingmore » power loss Delta IL = (6.03 dB) by increasing particle displacement (acousto-electric to mechanical transduction) at the output transducer. A 100-pg/cm(2) load was applied to the sensing area of each device to evaluate mass sensitivity. Our simulations suggest that ZnO filled cavities with shallow depth (2.5 mu m) have the greatest sensitivity. The FEM simulations are used to understand the acoustic wave propagation in microcavity-based SAW sensors. The observed enhancement in mass sensitivity and power transfer is attributed to waveguiding effects and constructive interference of the scattered acoustic waves from the microcavities. Devices fabricated with microcavities similar to 1 mu m deep decreased IL by 3.306 dB compared with a standard SAW device. Additional simulations were conducted for each device configuration using the same depth in order to make a direct comparison between measured and simulated results. Our findings offer encouraging prospects for designing low IL highly sensitive microcavity-based SAW biosensors.« less

SU-E-CAMPUS-T-03: Four-Dimensional Dose Distribution Measurement Using Plastic Scintillator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hashimoto, M; Kozuka, T; Oguchi, M

2014-06-15

Purpose: To develop the detector for the four-dimensional dose distribution measurement. Methods: We made the prototype detector for four-dimensional dose distribution measurement using a cylindrical plastic scintillator (5 cm diameter) and a conical reflection grass. The plastic scintillator is used as a phantom. When the plastic scintillator is irradiated, the scintillation light was emitted according to absorbed dose distribution. The conical reflection grass was arranged to surround the plastic scintillator, which project to downstream the projection images of the scintillation light. Then, the projection image was reflected to 45 degree direction by flat reflection grass, and was recorded by camcorder.more » By reconstructing the three-dimensional dose distribution from the projection image recorded in each frame, we could obtain the four-dimensional dose distribution. First, we tested the characteristic according to the amount of emitted light. Then we compared of the light profile and the dose profile calculated with the radiotherapy treatment planning system. Results: The dose dependency of the amount of light showed linearity. The pixel detecting smaller amount of light had high sensitivity than the pixel detecting larger amount of light. However the difference of the sensitivity could be corrected from the amount of light detected in each pixel. Both of the depth light profile through the conical reflection grass and the depth dose profile showed the same attenuation in the region deeper than peak depth. In lateral direction, the difference of the both profiles was shown at outside field and penumbra region. We consider that the difference is occurred due to the scatter of the scintillation light in the plastic scintillator block. Conclusion: It was possible to obtain the amount of light corresponding to the absorbed dose distribution from the prototype detector. Four-dimensional dose distributions can be reconstructed with high accuracy by the correction of the scattered light.« less

Dynamical influences on the moment of inertia tensor from lateral viscosity variations inferred from seismic tomographic models

NASA Technical Reports Server (NTRS)

Zhang, Shuxia; Yuen, David A.

1994-01-01

We have investigated the influences of lateral variations of viscosity on the moment of inertia tensor from viscous flows due to the density anomalies in the mantle inferred from seismic tomographic models. The scaling relations between the density and the seismic anomalies is taken as either a constant or a function increasing with depth in accord with the recent high-pressure experimental studies. The viscosity is taken as an exponential function of the 3D density anomaly. In models with an isoviscous background, the effects on the perturbed moment of inertia tensor from the lateral viscosity variations are smaller than those due to variations in the radial viscosity profiles. In mantle models with a background viscosity increasing with depth, the influences of the lateral viscosity variations are significant. The most striking feature in the latter case is that the two off-diagonal elements delta I(sub xz) and delta I(sub yz) in the inertia tensor exhibit greatest sensitivity to lateral variations of the viscosity. While the other elements of the inertia change by only about a few tens of percent in the range of lateral viscosity contrast considered (less than 300), delta I(sub xz) and delta I(sub yz) can vary up to 40 times even with a change in sign, depending on the radial viscosity stratification and the location of the strongest lateral variations. The increase in the velocity-density scaling relation with depth can reduce the influences of the lateral viscosity variations, but it does not change the overall sensitive nature of delta I(sub xz) and delta I(sub yz). This study demonstrates clearly that the lateral viscosity variations, especially in the upper mantle, must be considered in the determination of long-term polar wander, since the variations in the delta I(sub xz) and delta I(sub yz) terms are directly responsible for exciting rotational movements.

Controlling Force and Depth in Friction Stir Welding

NASA Technical Reports Server (NTRS)

Adams, Glynn; Loftus, Zachary; McCormac, Nathan; Venable, Richard

2005-01-01

Feedback control of the penetration force applied to a pin tool in friction stir welding has been found to be a robust and reliable means for controlling the depth of penetration of the tool. This discovery has made it possible to simplify depth control and to weld with greater repeatability, even on workpieces with long weld joints. Prior to this discovery, depths of penetration in friction stir welding were controlled by hard-tooled roller assemblies or by depth actuators controlled by feedback from such external sensors as linear variable-differential transformers or laser-based devices. These means of control are limited: A hard-tooled roller assembly confines a pin tool to a preset depth that cannot be changed easily during the welding process. A measurement by an external sensor is only an indirect indicative of the depth of penetration, and computations to correlate such a measurement with a depth of penetration are vulnerable to error. The present force-feedback approach exploits the proportionality between the depth and the force of penetration Unlike a depth measurement taken by an external sensor, a force measurement can be direct because it can be taken by a sensor coupled directly to the pin tool. The reading can be processed through a modern electronic servo control system to control an actuator to keep the applied penetration force at the desired level. In comparison with the older depth-control methods described above, this method offers greater sensitivity to plasticizing of the workpiece metal and is less sensitive to process noise, resulting in a more consistent process. In an experiment, a tapered panel was friction stir welded while controlling the force of penetration according to this method. The figure is a plot of measurements taken during the experiment, showing that force was controlled with a variation of 200 lb (890 N), resulting in control of the depth of penetration with a variation of 0.004 in. (0.1 mm).

Two-dimensional numerical simulations of shoaling internal solitary waves at the ASIAEX site in the South China Sea

NASA Astrophysics Data System (ADS)

Lamb, K. G.; Warn-Varnas, A.

2015-05-01

The interaction of barotropic tides with Luzon Strait topography generates some of the world's largest internal solitary waves which eventually shoal and dissipate on the western side of the northern South China Sea. Two-dimensional numerical simulations of the shoaling of a single internal solitary wave at the site of the Asian Seas International Acoustic Experiment (ASIAEX) have been undertaken in order to investigate the sensitivity of the shoaling process to the stratification and the underlying bathymetry and to explore the influence of rotation. The bulk of the simulations are inviscid; however, exploratory simulations using a vertical eddy-viscosity confined to a near bottom layer, along with a no-slip boundary condition, suggest that viscous effects may become important in water shallower than about 200 m. A shoaling solitary wave fissions into several waves. At depths of 200-300 m the front of the leading waves become nearly parallel to the bottom and develop a very steep back as has been observed. The leading waves are followed by waves of elevation (pedestals) that are conjugate to the waves of depression ahead and behind them. Horizontal resolutions of at least 50 m are required to simulate these well. Wave breaking was found to occur behind the second or third of the leading solitary waves, never at the back of the leading wave. Comparisons of the shoaling of waves started at depths of 1000 and 3000 m show significant differences and the shoaling waves can be significantly non-adiabatic even at depths greater than 2000 m. When waves reach a depth of 200 m, their amplitudes can be more than 50% larger than the largest possible solitary wave at that depth. The shoaling behaviour is sensitive to the presence of small-scale features in the bathymetry: a 200 m high bump at 700 m depth can result in the generation of many mode-two waves and of higher mode waves. Sensitivity to the stratification is considered by using three stratifications based on summer observations. They primarily differ in the depth of the thermocline. The generation of mode-two waves and the behaviour of the waves in shallow water is sensitive to this depth. Rotation affects the shoaling waves by reducing the amplitude of the leading waves via the radiation of long trailing inertia-gravity waves. The nonlinear-dispersive evolution of these inertia-gravity waves results in the formation of secondary mode-one wave packets.

2D dosimetry in a proton beam with a scintillating GEM detector

NASA Astrophysics Data System (ADS)

Seravalli, E.; de Boer, M. R.; Geurink, F.; Huizenga, J.; Kreuger, R.; Schippers, J. M.; van Eijk, C. W. E.

2009-06-01

A two-dimensional position-sensitive dosimetry system based on a scintillating gas detector is being developed for pre-treatment verification of dose distributions in particle therapy. The dosimetry system consists of a chamber filled with an Ar/CF4 scintillating gas mixture, inside which two gas electron multiplier (GEM) structures are mounted (Seravalli et al 2008b Med. Phys. Biol. 53 4651-65). Photons emitted by the excited Ar/CF4 gas molecules during the gas multiplication in the GEM holes are detected by a mirror-lens-CCD camera system. The intensity distribution of the measured light spot is proportional to the 2D dose distribution. In this work, we report on the characterization of the scintillating GEM detector in terms of those properties that are of particular importance in relative dose measurements, e.g. response reproducibility, dose dependence, dose rate dependence, spatial and time response, field size dependence, response uniformity. The experiments were performed in a 150 MeV proton beam. We found that the detector response is very stable for measurements performed in succession (σ = 0.6%) and its response reproducibility over 2 days is about 5%. The detector response was found to be linear with the dose in the range 0.05-19 Gy. No dose rate effects were observed between 1 and 16 Gy min-1 at the shallow depth of a water phantom and 2 and 38 Gy min-1 at the Bragg peak depth. No field size effects were observed in the range 120-3850 mm2. A signal rise and fall time of 2 µs was recorded and a spatial response of <=1 mm was measured.

Modeling of laser transmission contour welding process using FEA and DoE

NASA Astrophysics Data System (ADS)

Acherjee, Bappa; Kuar, Arunanshu S.; Mitra, Souren; Misra, Dipten

2012-07-01

In this research, a systematic investigation on laser transmission contour welding process is carried out using finite element analysis (FEA) and design of experiments (DoE) techniques. First of all, a three-dimensional thermal model is developed to simulate the laser transmission contour welding process with a moving heat source. The commercial finite element code ANSYS® multi-physics is used to obtain the numerical results by implementing a volumetric Gaussian heat source, and combined convection-radiation boundary conditions. Design of experiments together with regression analysis is then employed to plan the experiments and to develop mathematical models based on simulation results. Four key process parameters, namely power, welding speed, beam diameter, and carbon black content in absorbing polymer, are considered as independent variables, while maximum temperature at weld interface, weld width, and weld depths in transparent and absorbing polymers are considered as dependent variables. Sensitivity analysis is performed to determine how different values of an independent variable affect a particular dependent variable.

Evaluation of the dosimetric properties of a diode detector for small field proton radiosurgery.

PubMed

McAuley, Grant A; Teran, Anthony V; Slater, Jerry D; Slater, James M; Wroe, Andrew J

2015-11-08

The small fields and sharp gradients typically encountered in proton radiosurgery require high spatial resolution dosimetric measurements, especially below 1-2 cm diameters. Radiochromic film provides high resolution, but requires postprocessing and special handling. Promising alternatives are diode detectors with small sensitive volumes (SV) that are capable of high resolution and real-time dose acquisition. In this study we evaluated the PTW PR60020 proton dosimetry diode using radiation fields and beam energies relevant to radiosurgery applications. Energies of 127 and 157 MeV (9.7 to 15 cm range) and initial diameters of 8, 10, 12, and 20mm were delivered using single-stage scattering and four modulations (0, 15, 30, and 60mm) to a water tank in our treatment room. Depth dose and beam profile data were compared with PTW Markus N23343 ionization chamber, EBT2 Gafchromic film, and Monte Carlo simulations. Transverse dose profiles were measured using the diode in "edge-on" orientation or EBT2 film. Diode response was linear with respect to dose, uniform with dose rate, and showed an orientation-dependent (i.e., beam parallel to, or perpendicular to, detector axis) response of less than 1%. Diodevs. Markus depth-dose profiles, as well as Markus relative dose ratio vs. simulated dose-weighted average lineal energy plots, suggest that any LET-dependent diode response is negligible from particle entrance up to the very distal portion of the SOBP for the energies tested. Finally, while not possible with the ionization chamber due to partial volume effects, accurate diode depth-dose measurements of 8, 10, and 12 mm diameter beams were obtained compared to Monte Carlo simulations. Because of the small SV that allows measurements without partial volume effects and the capability of submillimeter resolution (in edge-on orientation) that is crucial for small fields and high-dose gradients (e.g., penumbra, distal edge), as well as negligible LET dependence over nearly the full the SOBP, the PTW proton diode proved to be a useful high-resolution, real-time metrology device for small proton field radiation measurements such as would be encountered in radiosurgery applications.

A Process-based, Climate-Sensitive Model to Derive Methane Emissions from Natural Wetlands: Application to 5 Wetland Sites, Sensitivity to Model Parameters and Climate

NASA Technical Reports Server (NTRS)

Walter, Bernadette P.; Heimann, Martin

1999-01-01

Methane emissions from natural wetlands constitutes the largest methane source at present and depends highly on the climate. In order to investigate the response of methane emissions from natural wetlands to climate variations, a 1-dimensional process-based climate-sensitive model to derive methane emissions from natural wetlands is developed. In the model the processes leading to methane emission are simulated within a 1-dimensional soil column and the three different transport mechanisms diffusion, plant-mediated transport and ebullition are modeled explicitly. The model forcing consists of daily values of soil temperature, water table and Net Primary Productivity, and at permafrost sites the thaw depth is included. The methane model is tested using observational data obtained at 5 wetland sites located in North America, Europe and Central America, representing a large variety of environmental conditions. It can be shown that in most cases seasonal variations in methane emissions can be explained by the combined effect of changes in soil temperature and the position of the water table. Our results also show that a process-based approach is needed, because there is no simple relationship between these controlling factors and methane emissions that applies to a variety of wetland sites. The sensitivity of the model to the choice of key model parameters is tested and further sensitivity tests are performed to demonstrate how methane emissions from wetlands respond to climate variations.

The influence of bed friction variability due to land cover on storm-driven barrier island morphodynamics

USGS Publications Warehouse

Passeri, Davina L.; Long, Joseph W.; Plant, Nathaniel G.; Bilskie, Matthew V.; Hagen, Scott C.

2018-01-01

Variations in bed friction due to land cover type have the potential to influence morphologic change during storm events; the importance of these variations can be studied through numerical simulation and experimentation at locations with sufficient observational data to initialize realistic scenarios, evaluate model accuracy and guide interpretations. Two-dimensional in the horizontal plane (2DH) morphodynamic (XBeach) simulations were conducted to assess morphodynamic sensitivity to spatially varying bed friction at Dauphin Island, AL using hurricanes Ivan (2004) and Katrina (2005) as experimental test cases. For each storm, three bed friction scenarios were simulated: (1) a constant Chezy coefficient across land and water, (2) a constant Chezy coefficient across land and depth-dependent Chezy coefficients across water, and (3) spatially varying Chezy coefficients across land based on land use/land cover (LULC) data and depth-dependent Chezy coefficients across water. Modeled post-storm bed elevations were compared qualitatively and quantitatively with post-storm lidar data. Results showed that implementing spatially varying bed friction influenced the ability of XBeach to accurately simulate morphologic change during both storms. Accounting for frictional effects due to large-scale variations in vegetation and development reduced cross-barrier sediment transport and captured overwash and breaching more accurately. Model output from the spatially varying friction scenarios was used to examine the need for an existing sediment transport limiter, the influence of pre-storm topography and the effects of water level gradients on storm-driven morphodynamics.

Quantification of tumor fluorescence during intraoperative optical cancer imaging.

PubMed

Judy, Ryan P; Keating, Jane J; DeJesus, Elizabeth M; Jiang, Jack X; Okusanya, Olugbenga T; Nie, Shuming; Holt, David E; Arlauckas, Sean P; Low, Phillip S; Delikatny, E James; Singhal, Sunil

2015-11-13

Intraoperative optical cancer imaging is an emerging technology in which surgeons employ fluorophores to visualize tumors, identify tumor-positive margins and lymph nodes containing metastases. This study compares instrumentation to measure tumor fluorescence. Three imaging systems (Spectropen, Glomax, Flocam) measured and quantified fluorescent signal-to-background ratios (SBR) in vitro, murine xenografts, tissue phantoms and clinically. Evaluation criteria included the detection of small changes in fluorescence, sensitivity of signal detection at increasing depths and practicality of use. In vitro, spectroscopy was superior in detecting incremental differences in fluorescence than luminescence and digital imaging (Ln[SBR] = 6.8 ± 0.6, 2.4 ± 0.3, 2.6 ± 0.1, p = 0.0001). In fluorescent tumor cells, digital imaging measured higher SBRs than luminescence (6.1 ± 0.2 vs. 4.3 ± 0.4, p = 0.001). Spectroscopy was more sensitive than luminometry and digital imaging in identifying murine tumor fluorescence (SBR = 41.7 ± 11.5, 5.1 ± 1.8, 4.1 ± 0.9, p = 0.0001), and more sensitive than digital imaging at detecting fluorescence at increasing depths (SBR = 7.0 ± 3.4 vs. 2.4 ± 0.5, p = 0.03). Lastly, digital imaging was the most practical and least time-consuming. All methods detected incremental differences in fluorescence. Spectroscopy was the most sensitive for small changes in fluorescence. Digital imaging was the most practical considering its wide field of view, background noise filtering capability, and sensitivity to increasing depth.

Oceanic lithosphere and asthenosphere - Thermal and mechanical structure

NASA Technical Reports Server (NTRS)

Schubert, G.; Yuen, D. A.; Froidevaux, C.

1976-01-01

A coupled thermomechanical subsolidus model of the oceanic lithosphere and asthenosphere is developed which includes vertical heat conduction, a temperature-dependent thermal conductivity, heat advection by a horizontal and vertical mass flow that depends on depth and age, contributions of viscous dissipation or shear heating, a linear or nonlinear deformation law relating shear stress and strain rate, as well as a temperature- and pressure-dependent viscosity. The model requires a constant horizontal velocity and temperature at the surface, but zero horizontal velocity and constant temperature at great depths. The depth- and age-dependent temperature, horizontal and vertical velocities, and viscosity structure of the lithosphere and asthenosphere are determined along with the age-dependent shear stress in those two zones. The ocean-floor topography, oceanic heat flow, and lithosphere thickness are deduced as functions of ocean-floor age; seismic velocity profiles which exhibit a marked low-velocity zone are constructed from the age-dependent geotherms and assumed values of the elastic parameters. It is found that simple boundary-layer cooling determines the thermal structure at young ages, while effects of viscous dissipation become more important at older ages.

Depth-encoded all-fiber swept source polarization sensitive OCT

PubMed Central

Wang, Zhao; Lee, Hsiang-Chieh; Ahsen, Osman Oguz; Lee, ByungKun; Choi, WooJhon; Potsaid, Benjamin; Liu, Jonathan; Jayaraman, Vijaysekhar; Cable, Alex; Kraus, Martin F.; Liang, Kaicheng; Hornegger, Joachim; Fujimoto, James G.

2014-01-01

Polarization sensitive optical coherence tomography (PS-OCT) is a functional extension of conventional OCT and can assess depth-resolved tissue birefringence in addition to intensity. Most existing PS-OCT systems are relatively complex and their clinical translation remains difficult. We present a simple and robust all-fiber PS-OCT system based on swept source technology and polarization depth-encoding. Polarization multiplexing was achieved using a polarization maintaining fiber. Polarization sensitive signals were detected using fiber based polarization beam splitters and polarization controllers were used to remove the polarization ambiguity. A simplified post-processing algorithm was proposed for speckle noise reduction relaxing the demand for phase stability. We demonstrated systems design for both ophthalmic and catheter-based PS-OCT. For ophthalmic imaging, we used an optical clock frequency doubling method to extend the imaging range of a commercially available short cavity light source to improve polarization depth-encoding. For catheter based imaging, we demonstrated 200 kHz PS-OCT imaging using a MEMS-tunable vertical cavity surface emitting laser (VCSEL) and a high speed micromotor imaging catheter. The system was demonstrated in human retina, finger and lip imaging, as well as ex vivo swine esophagus and cardiovascular imaging. The all-fiber PS-OCT is easier to implement and maintain compared to previous PS-OCT systems and can be more easily translated to clinical applications due to its robust design. PMID:25401008

Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage

PubMed Central

Brantner, Justin S.; Haake, Zachary J.; Burwick, John E.; Menge, Christopher M.; Hotchkiss, Shane T.; Senko, John M.

2014-01-01

We evaluated the depth-dependent geochemistry and microbiology of sediments that have developed via the microbially-mediated oxidation of Fe(II) dissolved in acid mine drainage (AMD), giving rise to a 8–10 cm deep “iron mound” that is composed primarily of Fe(III) (hydr)oxide phases. Chemical analyses of iron mound sediments indicated a zone of maximal Fe(III) reducing bacterial activity at a depth of approximately 2.5 cm despite the availability of dissolved O2 at this depth. Subsequently, Fe(II) was depleted at depths within the iron mound sediments that did not contain abundant O2. Evaluations of microbial communities at 1 cm depth intervals within the iron mound sediments using “next generation” nucleic acid sequencing approaches revealed an abundance of phylotypes attributable to acidophilic Fe(II) oxidizing Betaproteobacteria and the chloroplasts of photosynthetic microeukaryotic organisms in the upper 4 cm of the iron mound sediments. While we observed a depth-dependent transition in microbial community structure within the iron mound sediments, phylotypes attributable to Gammaproteobacterial lineages capable of both Fe(II) oxidation and Fe(III) reduction were abundant in sequence libraries (comprising ≥20% of sequences) from all depths. Similarly, abundances of total cells and culturable Fe(II) oxidizing bacteria were uniform throughout the iron mound sediments. Our results indicate that O2 and Fe(III) reduction co-occur in AMD-induced iron mound sediments, but that Fe(II)-oxidizing activity may be sustained in regions of the sediments that are depleted in O2. PMID:24860562

Activation of the Human MT Complex by Motion in Depth Induced by a Moving Cast Shadow

PubMed Central

Katsuyama, Narumi; Usui, Nobuo; Taira, Masato

2016-01-01

A moving cast shadow is a powerful monocular depth cue for motion perception in depth. For example, when a cast shadow moves away from or toward an object in a two-dimensional plane, the object appears to move toward or away from the observer in depth, respectively, whereas the size and position of the object are constant. Although the cortical mechanisms underlying motion perception in depth by cast shadow are unknown, the human MT complex (hMT+) is likely involved in the process, as it is sensitive to motion in depth represented by binocular depth cues. In the present study, we examined this possibility by using a functional magnetic resonance imaging (fMRI) technique. First, we identified the cortical regions sensitive to the motion of a square in depth represented via binocular disparity. Consistent with previous studies, we observed significant activation in the bilateral hMT+, and defined functional regions of interest (ROIs) there. We then investigated the activity of the ROIs during observation of the following stimuli: 1) a central square that appeared to move back and forth via a moving cast shadow (mCS); 2) a segmented and scrambled cast shadow presented beside the square (sCS); and 3) no cast shadow (nCS). Participants perceived motion of the square in depth in the mCS condition only. The activity of the hMT+ was significantly higher in the mCS compared with the sCS and nCS conditions. Moreover, the hMT+ was activated equally in both hemispheres in the mCS condition, despite presentation of the cast shadow in the bottom-right quadrant of the stimulus. Perception of the square moving in depth across visual hemifields may be reflected in the bilateral activation of the hMT+. We concluded that the hMT+ is involved in motion perception in depth induced by moving cast shadow and by binocular disparity. PMID:27597999

Eddy-current inversion in the thin-skin limit: Determination of depth and opening for a long crack

NASA Astrophysics Data System (ADS)

Burke, S. K.

1994-09-01

A method for crack size determination using eddy-current nondestructive evaluation is presented for the case of a plate containing an infinitely long crack of uniform depth and uniform crack opening. The approach is based on the approximate solution to Maxwell's equations for nonmagnetic conductors in the limit of small skin depth and relies on least-squares polynomial fits to a normalized coil impedance function as a function of skin depth. The method is straightforward to implement and is relatively insensitive to both systematic and random errors. The procedure requires the computation of two functions: a normalizing function, which depends both on the coil parameters and the skin depth, and a crack-depth function which depends only on the coil parameters in addition to the crack depth. The practical perfomance of the method was tested using a set of simulated cracks in the form of electro-discharge machined slots in aluminum alloy plates. The crack depths and crack opening deduced from the eddy-current measurements agree with the actual crack dimensions to within 10% or better. Recommendations concerning the optimum conditions for crack sizing are also made.

Through-Focus Vision Performance and Light Disturbances of 3 New Intraocular Lenses for Presbyopia Correction

PubMed Central

Escandón-García, Santiago; Ribeiro, Filomena J.; McAlinden, Colm

2018-01-01

Purpose To compare the through-focus visual performance in a clinical population of pseudophakic patients implanted with two new trifocal intraocular lenses (IOLs) and one extended depth of focus IOL. Methods Prospective, nonrandomized, examiner-masked case series. Twenty-three patients received the FineVision® and seven patients received the PanOptix™ trifocal IOLs. Fifteen patients received the Symfony extended depth of focus IOL. Mean age of patients was 63 ± 8 years. Through-focus visual acuity was measured from –3.00 to +1.00 D vergences. Contrast sensitivity was measured with and without a source of glare. Light disturbances were evaluated with the Light Distortion Analyzer. Results Though-focus evaluation showed that trifocal IOLs performed significantly better at near distance (33 and 40 cm), and extended depth of focus performed significantly better at intermediate distance (1.0 m). Contrast sensitivity function with glare and dysphotopsia was similar between the three IOLs and subjective response to questionnaire showed a significantly higher score (worse performance) for the extended depth of focus IOL compared to both trifocal IOLs in the bothersome subscale (p < 0.05). Conclusions Trifocal IOLs grant better performance at near distance while extended depth of focus IOL performs better at intermediate distance. Objective dysphotopsia measured with the Light Distortion Analyzer is not reduced in extended depth of focus IOL compared to trifocal IOLs. PMID:29651343

Parameters on reconstructions of geohistory, thermal history, and hydrocarbon generation history in a sedimentary basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cao, S.; Lerche, I.

1988-01-01

Geological processes related to petroleum generation, migration, and accumulation are very complicated in terms of time and variables involved, and are very difficult to simulate by laboratory experiments. For this reason, many mathematic/computer models have been developed to simulate these geological processes based on geological, geophysical, and geochemical principles. Unfortunately, none of these models can exactly simulate these processes because of the assumptions and simplifications made in these models and the errors in the input for the models. The sensitivity analysis is a comprehensive examination on how geological, geophysical, and geochemical parameters affect the reconstructions of geohistory, thermal history, andmore » hydrocarbon generation history. In this study, a one-dimensional fluid flow/compaction model has been used to run the sensitivity analysis. The authors will show the effects of some commonly used parameters such as depth, age, lithology, porosity, permeability, unconformity (time and eroded thickness), temperature at sediment surface, bottom hole temperature, present day heat flow, thermal gradient, thermal conductivity and kerogen type, and content on the evolutions of formation thickness, porosity, permeability, pressure with time and depth, heat flow with time, temperature with time and depth, vitrinite reflectance (R/sub 0/) and TTI with time and depth, oil window in terms of time and depth, and amount of hydrocarbon generated with time and depth.« less

Temperature-dependent Raman spectroscopy studies of the interface coupling effect of monolayer ReSe2 single crystals on Au foils.

PubMed

Jiang, Shaolong; Zhao, Liyun; Shi, Yuping; Xie, Chunyu; Zhang, Na; Zhang, Zhepeng; Huan, Yahuan; Yang, Pengfei; Hong, Min; Zhou, Xiebo; Shi, Jianping; Zhang, Qing; Zhang, Yanfeng

2018-05-18

Rhenium diselenide (ReSe 2 ), which bears in-plane anisotropic optical and electrical properties, is of considerable interest for its excellent applications in novel devices, such as polarization-sensitive photodetectors and integrated polarization-controllers. However, great challenges to date in the controllable synthesis of high-quality ReSe 2 have hindered its in-depth investigations and practical applications. Herein, we report a feasible synthesis of monolayer single-crystal ReSe 2 flakes on the Au foil substrate by using a chemical vapor deposition route. Particularly, we focus on the temperature-dependent Raman spectroscopy investigations of monolayer ReSe 2 grown on Au foils, which present concurrent red shifts of E g -like and A g -like modes with increasing measurement temperature from 77-290 K. Linear temperature dependences of both modes are revealed and explained from the anharmonic vibration of the ReSe 2 lattice. More importantly, the strong interaction of ReSe 2 with Au, with respect to that with SiO 2 /Si, is further confirmed by temperature-dependent Raman characterization. This work is thus proposed to shed light on the optical and thermal properties of such anisotropic two-dimensional three-atom-thick materials.

HIMMELI v1.0: HelsinkI Model of MEthane buiLd-up and emIssion for peatlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Raivonen, Maarit; Smolander, Sampo; Backman, Leif

Wetlands are one of the most significant natural sources of methane (CH 4) to the atmosphere. They emit CH 4 because decomposition of soil organic matter in waterlogged anoxic conditions produces CH 4, in addition to carbon dioxide (CO 2). Production of CH 4 and how much of it escapes to the atmosphere depend on a multitude of environmental drivers. Models simulating the processes leading to CH 4 emissions are thus needed for upscaling observations to estimate present CH 4 emissions and for producing scenarios of future atmospheric CH 4 concentrations. Aiming at a CH 4 model that can bemore » added to models describing peatland carbon cycling, we composed a model called HIMMELI that describes CH 4 build-up in and emissions from peatland soils. It is not a full peatland carbon cycle model but it requires the rate of anoxic soil respiration as input. Driven by soil temperature, leaf area index (LAI) of aerenchymatous peatland vegetation, and water table depth (WTD), it simulates the concentrations and transport of CH 4, CO 2, and oxygen (O 2) in a layered one-dimensional peat column. Here, we present the HIMMELI model structure and results of tests on the model sensitivity to the input data and to the description of the peat column (peat depth and layer thickness), and demonstrate that HIMMELI outputs realistic fluxes by comparing modeled and measured fluxes at two peatland sites. As HIMMELI describes only the CH 4-related processes, not the full carbon cycle, our analysis revealed mechanisms and dependencies that may remain hidden when testing CH 4 models connected to complete peatland carbon models, which is usually the case. Our results indicated that (1) the model is flexible and robust and thus suitable for different environments; (2) the simulated CH 4 emissions largely depend on the prescribed rate of anoxic respiration; (3) the sensitivity of the total CH 4 emission to other input variables is mainly mediated via the concentrations of dissolved gases, in particular, the O 2 concentrations that affect the CH 4 production and oxidation rates; (4) with given input respiration, the peat column description does not significantly affect the simulated CH 4 emissions in this model version.« less

HIMMELI v1.0: HelsinkI Model of MEthane buiLd-up and emIssion for peatlands

NASA Astrophysics Data System (ADS)

Raivonen, Maarit; Smolander, Sampo; Backman, Leif; Susiluoto, Jouni; Aalto, Tuula; Markkanen, Tiina; Mäkelä, Jarmo; Rinne, Janne; Peltola, Olli; Aurela, Mika; Lohila, Annalea; Tomasic, Marin; Li, Xuefei; Larmola, Tuula; Juutinen, Sari; Tuittila, Eeva-Stiina; Heimann, Martin; Sevanto, Sanna; Kleinen, Thomas; Brovkin, Victor; Vesala, Timo

2017-12-01

Wetlands are one of the most significant natural sources of methane (CH4) to the atmosphere. They emit CH4 because decomposition of soil organic matter in waterlogged anoxic conditions produces CH4, in addition to carbon dioxide (CO2). Production of CH4 and how much of it escapes to the atmosphere depend on a multitude of environmental drivers. Models simulating the processes leading to CH4 emissions are thus needed for upscaling observations to estimate present CH4 emissions and for producing scenarios of future atmospheric CH4 concentrations. Aiming at a CH4 model that can be added to models describing peatland carbon cycling, we composed a model called HIMMELI that describes CH4 build-up in and emissions from peatland soils. It is not a full peatland carbon cycle model but it requires the rate of anoxic soil respiration as input. Driven by soil temperature, leaf area index (LAI) of aerenchymatous peatland vegetation, and water table depth (WTD), it simulates the concentrations and transport of CH4, CO2, and oxygen (O2) in a layered one-dimensional peat column. Here, we present the HIMMELI model structure and results of tests on the model sensitivity to the input data and to the description of the peat column (peat depth and layer thickness), and demonstrate that HIMMELI outputs realistic fluxes by comparing modeled and measured fluxes at two peatland sites. As HIMMELI describes only the CH4-related processes, not the full carbon cycle, our analysis revealed mechanisms and dependencies that may remain hidden when testing CH4 models connected to complete peatland carbon models, which is usually the case. Our results indicated that (1) the model is flexible and robust and thus suitable for different environments; (2) the simulated CH4 emissions largely depend on the prescribed rate of anoxic respiration; (3) the sensitivity of the total CH4 emission to other input variables is mainly mediated via the concentrations of dissolved gases, in particular, the O2 concentrations that affect the CH4 production and oxidation rates; (4) with given input respiration, the peat column description does not significantly affect the simulated CH4 emissions in this model version.

HIMMELI v1.0: HelsinkI Model of MEthane buiLd-up and emIssion for peatlands

DOE PAGES

Raivonen, Maarit; Smolander, Sampo; Backman, Leif; ...

2017-12-22

Wetlands are one of the most significant natural sources of methane (CH 4) to the atmosphere. They emit CH 4 because decomposition of soil organic matter in waterlogged anoxic conditions produces CH 4, in addition to carbon dioxide (CO 2). Production of CH 4 and how much of it escapes to the atmosphere depend on a multitude of environmental drivers. Models simulating the processes leading to CH 4 emissions are thus needed for upscaling observations to estimate present CH 4 emissions and for producing scenarios of future atmospheric CH 4 concentrations. Aiming at a CH 4 model that can bemore » added to models describing peatland carbon cycling, we composed a model called HIMMELI that describes CH 4 build-up in and emissions from peatland soils. It is not a full peatland carbon cycle model but it requires the rate of anoxic soil respiration as input. Driven by soil temperature, leaf area index (LAI) of aerenchymatous peatland vegetation, and water table depth (WTD), it simulates the concentrations and transport of CH 4, CO 2, and oxygen (O 2) in a layered one-dimensional peat column. Here, we present the HIMMELI model structure and results of tests on the model sensitivity to the input data and to the description of the peat column (peat depth and layer thickness), and demonstrate that HIMMELI outputs realistic fluxes by comparing modeled and measured fluxes at two peatland sites. As HIMMELI describes only the CH 4-related processes, not the full carbon cycle, our analysis revealed mechanisms and dependencies that may remain hidden when testing CH 4 models connected to complete peatland carbon models, which is usually the case. Our results indicated that (1) the model is flexible and robust and thus suitable for different environments; (2) the simulated CH 4 emissions largely depend on the prescribed rate of anoxic respiration; (3) the sensitivity of the total CH 4 emission to other input variables is mainly mediated via the concentrations of dissolved gases, in particular, the O 2 concentrations that affect the CH 4 production and oxidation rates; (4) with given input respiration, the peat column description does not significantly affect the simulated CH 4 emissions in this model version.« less

Shuttle Debris Impact Tool Assessment Using the Modern Design of Experiments

NASA Technical Reports Server (NTRS)

DeLoach, R.; Rayos, E. M.; Campbell, C. H.; Rickman, S. L.

2006-01-01

Computational tools have been developed to estimate thermal and mechanical reentry loads experienced by the Space Shuttle Orbiter as the result of cavities in the Thermal Protection System (TPS). Such cavities can be caused by impact from ice or insulating foam debris shed from the External Tank (ET) on liftoff. The reentry loads depend on cavity geometry and certain Shuttle state variables, among other factors. Certain simplifying assumptions have been made in the tool development about the cavity geometry variables. For example, the cavities are all modeled as shoeboxes , with rectangular cross-sections and planar walls. So an actual cavity is typically approximated with an idealized cavity described in terms of its length, width, and depth, as well as its entry angle, exit angle, and side angles (assumed to be the same for both sides). As part of a comprehensive assessment of the uncertainty in reentry loads estimated by the debris impact assessment tools, an effort has been initiated to quantify the component of the uncertainty that is due to imperfect geometry specifications for the debris impact cavities. The approach is to compute predicted loads for a set of geometry factor combinations sufficient to develop polynomial approximations to the complex, nonparametric underlying computational models. Such polynomial models are continuous and feature estimable, continuous derivatives, conditions that facilitate the propagation of independent variable errors. As an additional benefit, once the polynomial models have been developed, they require fewer computational resources to execute than the underlying finite element and computational fluid dynamics codes, and can generate reentry loads estimates in significantly less time. This provides a practical screening capability, in which a large number of debris impact cavities can be quickly classified either as harmless, or subject to additional analysis with the more comprehensive underlying computational tools. The polynomial models also provide useful insights into the sensitivity of reentry loads to various cavity geometry variables, and reveal complex interactions among those variables that indicate how the sensitivity of one variable depends on the level of one or more other variables. For example, the effect of cavity length on certain reentry loads depends on the depth of the cavity. Such interactions are clearly displayed in the polynomial response models.

Comparison of Cherenkov excited fluorescence and phosphorescence molecular sensing from tissue with external beam irradiation.

PubMed

Lin, Huiyun; Zhang, Rongxiao; Gunn, Jason R; Esipova, Tatiana V; Vinogradov, Sergei; Gladstone, David J; Jarvis, Lesley A; Pogue, Brian W

2016-05-21

Ionizing radiation delivered by a medical linear accelerator (LINAC) generates Cherenkov emission within the treated tissue. A fraction of this light, in the 600-900 nm wavelength region, propagates through centimeters of tissue and can be used to excite optical probes in vivo, enabling molecular sensing of tissue analytes. The success of isolating the emission signal from this Cherenkov excitation background is dependent on key factors such as: (i) the Stokes shift of the probe spectra; (ii) the excited state lifetime; (iii) the probe concentration; (iv) the depth below the tissue surface; and (v) the radiation dose used. Previous studies have exclusively focused on imaging phosphorescent dyes, rather than fluorescent dyes. However there are only a few biologically important phosphorescent dyes and yet in comparison there are thousands of biologically relevant fluorescent dyes. So in this study the focus was a study of efficacy of Cherenkov-excited luminescence using fluorescent commercial near-infrared probes, IRDye 680RD, IRDye 700DX, and IRDye 800CW, and comparing them to the well characterized phosphorescent probe Oxyphor PtG4, an oxygen sensitive dye. Each probe was excited by Cherenkov light from a 6 MV external radiation beam, and measured in continuous wave or time-gated modes. The detection was performed by spectrally resolving the luminescence signals, and measuring them with spectrometer-based separation on an ICCD detector. The results demonstrate that IRDye 700DX and PtG4 allowed for the maximal signal to noise ratio. In the case of the phosphorescent probe, PtG4, with emission decays on the microsecond (μs) time scale, time-gated acquisition was possible, and it allowed for higher efficacy in terms of the probe concentration and detection depth. Phantoms containing the probe at 5 mm depth could be detected at concentrations down to the nanoMolar range, and at depths into the tissue simulating phantom near 3 cm. In vivo studies showed that 5 nmol of dye was readily detected with radiation doses less than 5 cGy. Since concentration, radiation dose and depth each contribute to the level of the detected signal, it may be possible to improve any of these parameters at expense of the others. This paradigm of nanoMolar sensitivity for optical reporters in vivo introduces the concept of molecular sensing of tumors during therapy or diagnostically with biologically relevant concentrations of fluorescent reporters.

The time-dependent accumulation of protoporphyrin IX fluorescence in nodular basal cell carcinoma following application of methyl aminolevulinate with an oxygen pressure injection device.

PubMed

Blake, E; Campbell, S; Allen, J; Mathew, J; Helliwell, P; Curnow, A

2012-12-05

Topical protoporphyrin (PpIX)-induced photodynamic therapy (PDT) relies on the penetration of the prodrug into the skin lesion and subsequent accumulation of the photosensitizer. Methyl aminolevulinate (MAL)-PDT is an established treatment for thinner and superficial non-melanoma skin cancers (NMSCs) but for the treatment of the thicker nodular basal cell carcinoma (nBCC) enhanced penetration of the prodrug is required. This study employed a new higher pressure, oxygen pressure injection (OPI) device, at the time of Metvix® application with a view to enhancing the penetration of MAL into the tumors. Each patient had Metvix® applied to a single nBCC followed by application of a higher pressure OPI device. Following different time intervals (0, 30, 60, 120 or 180 min) the tumors were excised. The maximum depth and area of MAL penetration achieved in each lesion was measured using PpIX fluorescence microscopy. As expected, an increase in the depth of MAL-induced PpIX accumulation and area of tumor sensitized was observed over time; when the Metvix® cream was applied for 0, 30, 60, 120 and 180 min the median depth of PpIX fluorescence was 0%, 21%, 26.5%, 75.5% and 90%, respectively and the median area of tumor sensitized was 0%, 4%, 6%, 19% and 60%, respectively. As the investigation presented here did not include a control arm, the relative depths of fluorescence observed in this study were statistically compared (using the non-parametric Mann Whitney U test) with the results of our previous study where patients had Metvix® cream applied either with or without the standard pressure OPI device. When the higher pressure OPI device was employed compared to without OPI this increase was observed to be greater following 30, 120, and 180 min although overall not significantly (p=0.835). In addition, no significant difference between the higher pressure OPI device employed here and the previously investigated standard pressure OPI device was observed (p=0.403). However, when the results for both OPI devices were combined and compared to the standard treatment (no OPI employed) group, although the difference did not reach significance (p=0.531) a consistent and substantial increase in the depth of PpIX fluorescence was observed, therefore employment of an OPI device during topical MAL-PDT protocols warrants further investigation as a technique for enhancing MAL penetration. Copyright © 2012 Elsevier B.V. All rights reserved.

Comparison of Cherenkov excited fluorescence and phosphorescence molecular sensing from tissue with external beam irradiation

NASA Astrophysics Data System (ADS)

Lin, Huiyun; Zhang, Rongxiao; Gunn, Jason R.; Esipova, Tatiana V.; Vinogradov, Sergei; Gladstone, David J.; Jarvis, Lesley A.; Pogue, Brian W.

2016-05-01

Ionizing radiation delivered by a medical linear accelerator (LINAC) generates Cherenkov emission within the treated tissue. A fraction of this light, in the 600-900 nm wavelength region, propagates through centimeters of tissue and can be used to excite optical probes in vivo, enabling molecular sensing of tissue analytes. The success of isolating the emission signal from this Cherenkov excitation background is dependent on key factors such as: (i) the Stokes shift of the probe spectra; (ii) the excited state lifetime; (iii) the probe concentration; (iv) the depth below the tissue surface; and (v) the radiation dose used. Previous studies have exclusively focused on imaging phosphorescent dyes, rather than fluorescent dyes. However there are only a few biologically important phosphorescent dyes and yet in comparison there are thousands of biologically relevant fluorescent dyes. So in this study the focus was a study of efficacy of Cherenkov-excited luminescence using fluorescent commercial near-infrared probes, IRDye 680RD, IRDye 700DX, and IRDye 800CW, and comparing them to the well characterized phosphorescent probe Oxyphor PtG4, an oxygen sensitive dye. Each probe was excited by Cherenkov light from a 6 MV external radiation beam, and measured in continuous wave or time-gated modes. The detection was performed by spectrally resolving the luminescence signals, and measuring them with spectrometer-based separation on an ICCD detector. The results demonstrate that IRDye 700DX and PtG4 allowed for the maximal signal to noise ratio. In the case of the phosphorescent probe, PtG4, with emission decays on the microsecond (μs) time scale, time-gated acquisition was possible, and it allowed for higher efficacy in terms of the probe concentration and detection depth. Phantoms containing the probe at 5 mm depth could be detected at concentrations down to the nanoMolar range, and at depths into the tissue simulating phantom near 3 cm. In vivo studies showed that 5 nmol of dye was readily detected with radiation doses less than 5 cGy. Since concentration, radiation dose and depth each contribute to the level of the detected signal, it may be possible to improve any of these parameters at expense of the others. This paradigm of nanoMolar sensitivity for optical reporters in vivo introduces the concept of molecular sensing of tumors during therapy or diagnostically with biologically relevant concentrations of fluorescent reporters.

Temperature and depth dependence of positron annihilation parameters in YBa2Cu3O7-x and La1.85Sr0.15CuO4

NASA Astrophysics Data System (ADS)

Lynn, K. G.; Usmar, S. G.; Nielsen, B.; van der Kolk, G. J.; Kanazawa, I.; Sferlazzo, P.; Moodenbaugh, A. R.

1988-02-01

The temperature dependence of the positron annihilation parameters for YBa2Cu3O7-x x=0.7, 0.4 and 0.0 and La1.85Sr0.15CuO4 were measured. The depth dependence of the YBa2Cu3O7 was studied using a variable-energy positron beam showing a strong depth dependence in the Doppler line-shape extending up to an average depth of ˜5.0 μm. It was found that a transition in the Doppler line-shape parameter, ``S'', was associated with the superconducting transition temperature (Tc) in YBa2Cu3O7-x x=0.4 and 0.0 while no transition was observed in the nonsuperconducting YBa2Cu3O6.3. Positron lifetime parameters in YBa2Cu3O7 were found to be consistent with positrons localized at open volume regions (probably unoccupied crystallographic sites) in this material with a lifetime of 210 psec at 300 K. These results indicate that the electron density at these unoccupied sites increases, using a free electron model, approximately 9% between 100 and 12 K.

Theoretical oscillation frequencies for solar-type dwarfs from stellar models with 〈3D〉-atmospheres

NASA Astrophysics Data System (ADS)

Jørgensen, Andreas Christ Sølvsten; Weiss, Achim; Mosumgaard, Jakob Rørsted; Silva Aguirre, Victor; Sahlholdt, Christian Lundsgaard

2017-12-01

We present a new method for replacing the outermost layers of stellar models with interpolated atmospheres based on results from 3D simulations, in order to correct for structural inadequacies of these layers. This replacement is known as patching. Tests, based on 3D atmospheres from three different codes and interior models with different input physics, are performed. Using solar models, we investigate how different patching criteria affect the eigenfrequencies. These criteria include the depth, at which the replacement is performed, the quantity, on which the replacement is based, and the mismatch in Teff and log g between the un-patched model and patched 3D atmosphere. We find the eigenfrequencies to be unaltered by the patching depth deep within the adiabatic region, while changing the patching quantity or the employed atmosphere grid leads to frequency shifts that may exceed 1 μHz. Likewise, the eigenfrequencies are sensitive to mismatches in Teff or log g. A thorough investigation of the accuracy of a new scheme, for interpolating mean 3D stratifications within the atmosphere grids, is furthermore performed. Throughout large parts of the atmosphere grids, our interpolation scheme yields sufficiently accurate results for the purpose of asteroseismology. We apply our procedure in asteroseismic analyses of four Kepler stars and draw the same conclusions as in the solar case: Correcting for structural deficiencies lowers the eigenfrequencies, this correction is slightly sensitive to the patching criteria, and the remaining frequency discrepancy between models and observations is less frequency dependent. Our work shows the applicability and relevance of patching in asteroseismology.

A microwave resonator for limiting depth sensitivity for electron paramagnetic resonance spectroscopy of surfaces.

PubMed

Sidabras, Jason W; Varanasi, Shiv K; Mett, Richard R; Swarts, Steven G; Swartz, Harold M; Hyde, James S

2014-10-01

A microwave Surface Resonator Array (SRA) structure is described for use in Electron Paramagnetic Resonance (EPR) spectroscopy. The SRA has a series of anti-parallel transmission line modes that provides a region of sensitivity equal to the cross-sectional area times its depth sensitivity, which is approximately half the distance between the transmission line centers. It is shown that the quarter-wave twin-lead transmission line can be a useful element for design of microwave resonators at frequencies as high as 10 GHz. The SRA geometry is presented as a novel resonator for use in surface spectroscopy where the region of interest is either surrounded by lossy material, or the spectroscopist wishes to minimize signal from surrounding materials. One such application is in vivo spectroscopy of human finger-nails at X-band (9.5 GHz) to measure ionizing radiation dosages. In order to reduce losses associated with tissues beneath the nail that yield no EPR signal, the SRA structure is designed to limit depth sensitivity to the thickness of the fingernail. Another application, due to the resonator geometry and limited depth penetration, is surface spectroscopy in coating or material science. To test this application, a spectrum of 1.44 μM of Mg(2+) doped polystyrene 1.1 mm thick on an aluminum surface is obtained. Modeling, design, and simulations were performed using Wolfram Mathematica (Champaign, IL; v. 9.0) and Ansys High Frequency Structure Simulator (HFSS; Canonsburg, PA; v. 15.0). A micro-strip coupling circuit is designed to suppress unwanted modes and provide a balanced impedance transformation to a 50 Ω coaxial input. Agreement between simulated and experimental results is shown.

A microwave resonator for limiting depth sensitivity for electron paramagnetic resonance spectroscopy of surfaces

PubMed Central

Sidabras, Jason W.; Varanasi, Shiv K.; Mett, Richard R.; Swarts, Steven G.; Swartz, Harold M.; Hyde, James S.

2014-01-01

A microwave Surface Resonator Array (SRA) structure is described for use in Electron Paramagnetic Resonance (EPR) spectroscopy. The SRA has a series of anti-parallel transmission line modes that provides a region of sensitivity equal to the cross-sectional area times its depth sensitivity, which is approximately half the distance between the transmission line centers. It is shown that the quarter-wave twin-lead transmission line can be a useful element for design of microwave resonators at frequencies as high as 10 GHz. The SRA geometry is presented as a novel resonator for use in surface spectroscopy where the region of interest is either surrounded by lossy material, or the spectroscopist wishes to minimize signal from surrounding materials. One such application is in vivo spectroscopy of human finger-nails at X-band (9.5 GHz) to measure ionizing radiation dosages. In order to reduce losses associated with tissues beneath the nail that yield no EPR signal, the SRA structure is designed to limit depth sensitivity to the thickness of the fingernail. Another application, due to the resonator geometry and limited depth penetration, is surface spectroscopy in coating or material science. To test this application, a spectrum of 1.44 μM of Mg2+ doped polystyrene 1.1 mm thick on an aluminum surface is obtained. Modeling, design, and simulations were performed using Wolfram Mathematica (Champaign, IL; v. 9.0) and Ansys High Frequency Structure Simulator (HFSS; Canonsburg, PA; v. 15.0). A micro-strip coupling circuit is designed to suppress unwanted modes and provide a balanced impedance transformation to a 50 Ω coaxial input. Agreement between simulated and experimental results is shown. PMID:25362434

A microwave resonator for limiting depth sensitivity for electron paramagnetic resonance spectroscopy of surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sidabras, Jason W.; Varanasi, Shiv K.; Hyde, James S.

2014-10-15

A microwave Surface Resonator Array (SRA) structure is described for use in Electron Paramagnetic Resonance (EPR) spectroscopy. The SRA has a series of anti-parallel transmission line modes that provides a region of sensitivity equal to the cross-sectional area times its depth sensitivity, which is approximately half the distance between the transmission line centers. It is shown that the quarter-wave twin-lead transmission line can be a useful element for design of microwave resonators at frequencies as high as 10 GHz. The SRA geometry is presented as a novel resonator for use in surface spectroscopy where the region of interest is eithermore » surrounded by lossy material, or the spectroscopist wishes to minimize signal from surrounding materials. One such application is in vivo spectroscopy of human finger-nails at X-band (9.5 GHz) to measure ionizing radiation dosages. In order to reduce losses associated with tissues beneath the nail that yield no EPR signal, the SRA structure is designed to limit depth sensitivity to the thickness of the fingernail. Another application, due to the resonator geometry and limited depth penetration, is surface spectroscopy in coating or material science. To test this application, a spectrum of 1.44 μM of Mg{sup 2+} doped polystyrene 1.1 mm thick on an aluminum surface is obtained. Modeling, design, and simulations were performed using Wolfram Mathematica (Champaign, IL; v. 9.0) and Ansys High Frequency Structure Simulator (HFSS; Canonsburg, PA; v. 15.0). A micro-strip coupling circuit is designed to suppress unwanted modes and provide a balanced impedance transformation to a 50 Ω coaxial input. Agreement between simulated and experimental results is shown.« less

A singularity free approach to post glacial rebound calculations

NASA Technical Reports Server (NTRS)

Fang, Ming; Hager, Bradford H.

1994-01-01

Calculating the post glacial response of a viscoelastic Earth model using the exponential decay normal mode technique leads to intrinsic singularities if viscosity varies continuously as a function of radius. We develop a numerical implementation of the Complex Real Fourier transform (CRFT) method as an accurate and stable procedure to avoid these singularities. Using CRFT, we investigate the response of a set of Maxwell Earth models to surface loading. We find that the effect of expanding a layered viscosity structure into a continuously varying structure is to destroy the modes associated with the boundary between layers. Horizontal motion is more sensitive than vertical motion to the viscosity structure just below the lithosphere. Horizontal motion is less sensitive to the viscosity of the lower mantle than the vertical motion is. When the viscosity increases at 670 km depth by a factor of about 60, the response of the lower mantle is close to its elastic limit. Any further increase of the viscosity contrast at 670 km depth or further increase of viscosity as a continuous function of depth starting from 670 km depth is unlikely to be resolved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shaw, Guinevere C.; Bannister, Mark E.; Biewer, Theodore M.

Laser-induced breakdown spectroscopy (LIBS) results are presented that provide depth-resolved identification of He implanted in polycrystalline tungsten (PC-W) targets by a 200 keV He+ ion beam, with a surface temperature of approximately 900 °C and a peak fluence of 10 23 m –2. He retention, and the influence of He on deuterium and tritium recycling, permeation, and retention in PC-W plasma facing components are important questions for the divertor and plasma facing components in a fusion reactor, yet are difficult to quantify. The purpose of this work is to demonstrate the ability of LIBS to identify helium in tungsten; tomore » investigate the sensitivity of laser parameters including, laser energy and gate delay, that directly influence the sensitivity and depth resolution of LIBS; and to perform a proof-of-principle experiment using LIBS to measure relative He intensities as a function of depth. In conclusion, the results presented demonstrate the potential not only to identify helium but also to develop a methodology to quantify gaseous impurity concentration in PC-W as a function of depth.« less

The detection of He in tungsten following ion implantation by laser-induced breakdown spectroscopy

NASA Astrophysics Data System (ADS)

Shaw, G.; Bannister, M.; Biewer, T. M.; Martin, M. Z.; Meyer, F.; Wirth, B. D.

2018-01-01

Laser-induced breakdown spectroscopy (LIBS) results are presented that provide depth-resolved identification of He implanted in polycrystalline tungsten (PC-W) targets by a 200 keV He+ ion beam, with a surface temperature of approximately 900 °C and a peak fluence of 1023 m-2. He retention, and the influence of He on deuterium and tritium recycling, permeation, and retention in PC-W plasma facing components are important questions for the divertor and plasma facing components in a fusion reactor, yet are difficult to quantify. The purpose of this work is to demonstrate the ability of LIBS to identify helium in tungsten; to investigate the sensitivity of laser parameters including, laser energy and gate delay, that directly influence the sensitivity and depth resolution of LIBS; and to perform a proof-of-principle experiment using LIBS to measure relative He intensities as a function of depth. The results presented demonstrate the potential not only to identify helium but also to develop a methodology to quantify gaseous impurity concentration in PC-W as a function of depth.

Trade-offs in sensitivity and sampling depth in bimodal atomic force microscopy and comparison to the trimodal case

PubMed Central

Eslami, Babak; Ebeling, Daniel

2014-01-01

Summary This paper presents experiments on Nafion® proton exchange membranes and numerical simulations illustrating the trade-offs between the optimization of compositional contrast and the modulation of tip indentation depth in bimodal atomic force microscopy (AFM). We focus on the original bimodal AFM method, which uses amplitude modulation to acquire the topography through the first cantilever eigenmode, and drives a higher eigenmode in open-loop to perform compositional mapping. This method is attractive due to its relative simplicity, robustness and commercial availability. We show that this technique offers the capability to modulate tip indentation depth, in addition to providing sample topography and material property contrast, although there are important competing effects between the optimization of sensitivity and the control of indentation depth, both of which strongly influence the contrast quality. Furthermore, we demonstrate that the two eigenmodes can be highly coupled in practice, especially when highly repulsive imaging conditions are used. Finally, we also offer a comparison with a previously reported trimodal AFM method, where the above competing effects are minimized. PMID:25161847

Spectral-domain low-coherence interferometry for phase-sensitive measurement of Faraday rotation at multiple depths.

PubMed

Yeh, Yi-Jou; Black, Adam J; Akkin, Taner

2013-10-10

We describe a method for differential phase measurement of Faraday rotation from multiple depth locations simultaneously. A polarization-maintaining fiber-based spectral-domain interferometer that utilizes a low-coherent light source and a single camera is developed. Light decorrelated by the orthogonal channels of the fiber is launched on a sample as two oppositely polarized circular states. These states reflect from sample surfaces and interfere with the corresponding states of the reference arm. A custom spectrometer, which is designed to simplify camera alignment, separates the orthogonal channels and records the interference-related oscillations on both spectra. Inverse Fourier transform of the spectral oscillations in k-space yields complex depth profiles, whose amplitudes and phase difference are related to reflectivity and Faraday rotation within the sample, respectively. Information along a full depth profile is produced at the camera speed without performing an axial scan for a multisurface sample. System sensitivity for the Faraday rotation measurement is 0.86 min of arc. Verdet constants of clear liquids and turbid media are measured at 687 nm.

Satellite-Based Evidence of Wavelength-Dependent Aerosol Absorption in Biomass Burning Smoke Inferred from Ozone Monitoring Instrument

NASA Technical Reports Server (NTRS)

Jethva, H.; Torres, O.

2012-01-01

We provide satellite-based evidence of the spectral dependence of absorption in biomass burning aerosols over South America using near-UV measurements made by the Ozone Monitoring Instrument (OMI) during 2005-2007. In the current near-UV OMI aerosol algorithm (OMAERUV), it is implicitly assumed that the only absorbing component in carbonaceous aerosols is black carbon whose imaginary component of the refractive index is wavelength independent. With this assumption, OMI-derived aerosol optical depth (AOD) is found to be significantly over-estimated compared to that of AERONET at several sites during intense biomass burning events (August-September). Other well-known sources of error affecting the near-UV method of aerosol retrieval do not explain the large observed AOD discrepancies between the satellite and the ground-based observations. A number of studies have revealed strong spectral dependence in carbonaceous aerosol absorption in the near-UV region suggesting the presence of organic carbon in biomass burning generated aerosols. A sensitivity analysis examining the importance of accounting for the presence of wavelength-dependent aerosol absorption in carbonaceous particles in satellite-based remote sensing was carried out in this work. The results convincingly show that the inclusion of spectrally-dependent aerosol absorption in the radiative transfer calculations leads to a more accurate characterization of the atmospheric load of carbonaceous aerosols.

Probing the SEB Sensitive Depth of a Power MOSFET Using a Two-Photon Absorption Laser Method

NASA Technical Reports Server (NTRS)

Lauenstein, Jean-Marie; Liu, Sandra; Titus, Jeffrey L.; McMorrow, Dale; Casey, Megan C.; Buchner, Stephen P.; Warner, Jeffrey; Phan, Anthony M.; Topper, Alyson D.; Kim, Hak S.;

Sensitivity of storage field performance to geologic and cavern design parameters in salt domes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ehgartner, Brian L.; Park, Byoung Yoon

2009-03-01

A sensitivity study was performed utilizing a three dimensional finite element model to assess allowable cavern field sizes for strategic petroleum reserve salt domes. A potential exists for tensile fracturing and dilatancy damage to salt that can compromise the integrity of a cavern field in situations where high extraction ratios exist. The effects of salt creep rate, depth of salt dome top, dome size, caprock thickness, elastic moduli of caprock and surrounding rock, lateral stress ratio of surrounding rock, cavern size, depth of cavern, and number of caverns are examined numerically. As a result, a correlation table between the parametersmore » and the impact on the performance of storage field was established. In general, slower salt creep rates, deeper depth of salt dome top, larger elastic moduli of caprock and surrounding rock, and a smaller radius of cavern are better for structural performance of the salt dome.« less

How the Slip Distribution Complexities Control the Tsunami Scenarios: a Sensitivity Analysis for the Hellenic and Calabrian Subduction Interfaces.

NASA Astrophysics Data System (ADS)

Scala, A.; Murphy, S.; Herrero, A.; Maesano, F. E.; Lorito, S.; Romano, F.; Tiberti, M. M.; Tonini, R.; Volpe, M.; Basili, R.

2017-12-01

Recent giant tsunamigenic earthquakes (Sumatra 2004, Chile 2010, Tohoku 2011) have confirmed that the complexity of seismic slip distributions may play a fundamental role in the generation and the amplitude of the tsunami waves. In particular, big patches of large slip on the shallower part of the subduction zones, as well as slow rupture propagation within low rigidity areas, can contribute to increase the tsunamigenic potential thus generating devastating coastal inundation. In the Mediterranean Sea, some subduction structures can be identified, such as the Hellenic Arc at the boundary between the African and Aegean plates, and the Calabrian Arc between the European and African plates. We have modelled these areas using discretized high-resolution 3D fault geometries with realistic variability of the strike and dip angles. In particular, the latter geometries have been constrained from the analysis of a dense network of seismic reflection profiles and the seismicity of the areas. To study the influence of different rigidity conditions, we compare the tsunami scenarios deriving from homogeneous slip to those obtained from depth-dependent slip distributions at different magnitudes. These depth-dependent slip distributions are obtained by imposing a variability with depth of both shear modulus and seismic rate, and the conservation of the dislocation over the whole subduction zone. Furthermore, we generate along the Hellenic and Calabrian arc subduction interfaces an ensemble of stochastic slip distributions using a composite source model technique. To mimic either single or multiple asperity source models, the distribution of sub-events whose sum produces the stochastic slip, are distributed based on a PDF, defined as the combination of either one or more Gaussian functions. Tsunami scenarios are then generated from this ensemble in order to address how the position of the main patch of slip can affect the tsunami amplitude along the coast.

Snow and Frost Depths on North and South Slopes

Treesearch

Richard S. Sartz

1973-01-01

Aspect affects soil frost depth by influencing the amount of solar radiation received at the ground or snow surface. Depending on the conditions, frost can be of equal depth on north and south slopes, deeper on north slopes, or deeper on south slopes. Data illustrate all three conditions

Noncontact holographic detection for photoacoustic tomography

NASA Astrophysics Data System (ADS)

Buj, Christian; Münter, Michael; Schmarbeck, Benedikt; Horstmann, Jens; Hüttmann, Gereon; Brinkmann, Ralf

2017-10-01

A holographic method for high-speed, noncontact photoacoustic tomography is introduced and evaluated. Relative changes of the object's topography, induced by the impact of thermoelastic pressure waves, were determined at nanometer sensitivity without physical contact. The object's surface was illuminated with nanosecond laser pulses and imaged with a high-speed CMOS camera. From two interferograms measured before and after excitation of the acoustic wave, surface displacement was calculated and then used as the basis for a tomographic reconstruction of the initial pressure caused by optical absorption. The holographic detection scheme enables variable sampling rates of the photoacoustic signal of up to 50 MHz. The total acquisition times for complete volumes with 230 MVoxel is far below 1 s. Measurements of silicone and porcine skin tissue phantoms with embedded artificial absorbers, which served as a model for human subcutaneous vascular networks, were possible. Three-dimensional reconstructions of the absorbing structures show details with a diameter of 310 μm up to a depth of 2.5 mm. Theoretical limitations and the experimental sensitivity, as well as the potential for in vivo imaging depending on the detection repetition rate, are analyzed and discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferreira, C; Ahmad, S; Firestone, B

Purpose: To compare dosimetrically three plan calculation systems (Plato, Varian Brachytherapy, and in-house-made Excel) available for I-125 COMS eye plaque treatment with measurement. Methods: All systems assume homogeneous media and calculations are based on a three-dimensional Cartesian coordinates, Plato and Brachytherapy Planning are based on AAPM TG-43 and the in-house Excel program only on inverse square corrections. Doses at specific depths were measured with EBT3 Gafchromic film from a fully loaded and a partially loaded 16 mm plaque (13 and 8 seeds respectively, I-125, model 6711 GE, Oncura). Measurements took place in a water tank, utilizing solid water blocks andmore » a 3D-printed plaque holder. Taking advantage that gafchromic film has low energy dependence, a dose step wedge was delivered with 6 MV photon beam from a Varian 2100 EX linac for calibration. The gray-scale to dose in cGy was obtained with an Epson Expression 10000 XL scanner in the green channel. Treatment plans were generated for doses of 2200 cGy to a depth of 7 mm, and measurements were taken on a sagittal plane. Results: The calculated dose at the prescription point was 2242, 2344, and 2211 cGy with Excel, Brachyvision and Plato respectively for a fully loaded plaque, for the partially loaded plaque the doses were 2266, 2477, and 2193 cGy respectively. At 5 mm depth the doses for Brachyvision and Plato were comparable (3399 and 3267 cGy respectively), however, the measured dose in film was 3180 cGy which was lower by as much as 6.4% in the fully loaded plaque and 7.6% in the partially loaded plaque. Conclusion: Careful methodology and calibration are essential when measuring doses at specific depth due to the sensitivity and rapid dose fall off of I-125.« less

A model of the CO2 exchanges between biosphere and atmosphere in the tundra

NASA Technical Reports Server (NTRS)

Labgaa, Rachid R.; Gautier, Catherine

1992-01-01

A physical model of the soil thermal regime in a permafrost terrain has been developed and validated with soil temperature measurements at Barrow, Alaska. The model calculates daily soil temperatures as a function of depth and average moisture contents of the organic and mineral layers using a set of five climatic variables, i.e., air temperature, precipitation, cloudiness, wind speed, and relative humidity. The model is not only designed to study the impact of climate change on the soil temperature and moisture regime, but also to provide the input to a decomposition and net primary production model. In this context, it is well known that CO2 exchanges between the terrestrial biosphere and the atmosphere are driven by soil temperature through decomposition of soil organic matter and root respiration. However, in tundra ecosystems, net CO2 exchange is extremely sensitive to soil moisture content; therefore it is necessary to predict variations in soil moisture in order to assess the impact of climate change on carbon fluxes. To this end, the present model includes the representation of the soil moisture response to changes in climatic conditions. The results presented in the foregoing demonstrate that large errors in soil temperature and permafrost depth estimates arise from neglecting the dependence of the soil thermal regime on soil moisture contents. Permafrost terrain is an example of a situation where soil moisture and temperature are particularly interrelated: drainage conditions improve when the depth of the permafrost increases; a decrease in soil moisture content leads to a decrease in the latent heat required for the phase transition so that the heat penetrates faster and deeper, and the maximum depth of thaw increases; and as excepted, soil thermal coefficients increase with moisture.

The VLITE Post-Processing Pipeline

NASA Astrophysics Data System (ADS)

Richards, Emily E.; Clarke, Tracy; Peters, Wendy; Polisensky, Emil; Kassim, Namir E.

2018-01-01

A post-processing pipeline to adaptively extract and catalog point sources is being developed to enhance the scientific value and accessibility of data products generated by the VLA Low-band Ionosphere and Transient Experiment (VLITE; ) on the Karl G. Jansky Very Large Array (VLA). In contrast to other radio sky surveys, the commensal observing mode of VLITE results in varying depths, sensitivities, and spatial resolutions across the sky based on the configuration of the VLA, location on the sky, and time on source specified by the primary observer for their independent science objectives. Therefore, previously developed tools and methods for generating source catalogs and survey statistics are not always appropriate for VLITE's diverse and growing set of data. A raw catalog of point sources extracted from every VLITE image will be created from source fit parameters stored in a queryable database. Point sources will be measured using the Python Blob Detector and Source Finder software (PyBDSF; Mohan & Rafferty 2015). Sources in the raw catalog will be associated with previous VLITE detections in a resolution- and sensitivity-dependent manner, and cross-matched to other radio sky surveys to aid in the detection of transient and variable sources. Final data products will include separate, tiered point source catalogs grouped by sensitivity limit and spatial resolution.

Reservoir Simulations of Low-Temperature Geothermal Reservoirs

NASA Astrophysics Data System (ADS)

Bedre, Madhur Ganesh

The eastern United States generally has lower temperature gradients than the western United States. However, West Virginia, in particular, has higher temperature gradients compared to other eastern states. A recent study at Southern Methodist University by Blackwell et al. has shown the presence of a hot spot in the eastern part of West Virginia with temperatures reaching 150°C at a depth of between 4.5 and 5 km. This thesis work examines similar reservoirs at a depth of around 5 km resembling the geology of West Virginia, USA. The temperature gradients used are in accordance with the SMU study. In order to assess the effects of geothermal reservoir conditions on the lifetime of a low-temperature geothermal system, a sensitivity analysis study was performed on following seven natural and human-controlled parameters within a geothermal reservoir: reservoir temperature, injection fluid temperature, injection flow rate, porosity, rock thermal conductivity, water loss (%) and well spacing. This sensitivity analysis is completed by using ‘One factor at a time method (OFAT)’ and ‘Plackett-Burman design’ methods. The data used for this study was obtained by carrying out the reservoir simulations using TOUGH2 simulator. The second part of this work is to create a database of thermal potential and time-dependant reservoir conditions for low-temperature geothermal reservoirs by studying a number of possible scenarios. Variations in the parameters identified in sensitivity analysis study are used to expand the scope of database. Main results include the thermal potential of reservoir, pressure and temperature profile of the reservoir over its operational life (30 years for this study), the plant capacity and required pumping power. The results of this database will help the supply curves calculations for low-temperature geothermal reservoirs in the United States, which is the long term goal of the work being done by the geothermal research group under Dr. Anderson at West Virginia University.

A scintillating gas detector for 2D dose measurements in clinical carbon beams.

PubMed

Seravalli, E; de Boer, M; Geurink, F; Huizenga, J; Kreuger, R; Schippers, J M; van Eijk, C W E; Voss, B

2008-09-07

A two-dimensional position sensitive dosimetry system based on a scintillating gas detector has been developed for pre-treatment verification of dose distributions in hadron therapy. The dosimetry system consists of a chamber filled with an Ar/CF4 scintillating gas mixture, inside which two cascaded gas electron multipliers (GEMs) are mounted. A GEM is a thin kapton foil with copper cladding structured with a regular pattern of sub-mm holes. The primary electrons, created in the detector's sensitive volume by the incoming beam, drift in an electric field towards the GEMs and undergo gas multiplication in the GEM holes. During this process, photons are emitted by the excited Ar/CF4 gas molecules and detected by a mirror-lens-CCD camera system. Since the amount of emitted light is proportional to the dose deposited in the sensitive volume of the detector by the incoming beam, the intensity distribution of the measured light spot is proportional to the 2D hadron dose distribution. For a measurement of a 3D dose distribution, the scintillating gas detector is mounted at the beam exit side of a water-bellows phantom, whose thickness can be varied in steps. In this work, the energy dependence of the output signal of the scintillating gas detector has been verified in a 250 MeV/u clinical 12C ion beam by means of a depth-dose curve measurement. The underestimation of the measured signal at the Bragg peak depth is only 9% with respect to an air-filled ionization chamber. This is much smaller than the underestimation found for a scintillating Gd2O2S:Tb ('Lanex') screen under the same measurement conditions (43%). Consequently, the scintillating gas detector is a promising device for verifying dose distributions in high LET beams, for example to check hadron therapy treatment plans which comprise beams with different energies.

The Influence of Photoreceptor Size and Distribution on Optical Sensitivity in the Eyes of Lanternfishes (Myctophidae)

PubMed Central

de Busserolles, Fanny; Fitzpatrick, John L.; Marshall, N. Justin; Collin, Shaun P.

2014-01-01

The mesopelagic zone of the deep-sea (200-1000 m) is characterised by exponentially diminishing levels of downwelling sunlight and by the predominance of bioluminescence emissions. The ability of mesopelagic organisms to detect and behaviourally react to downwelling sunlight and/or bioluminescence will depend on the visual task and ultimately on the eyes and their capacity for detecting low levels of illumination and intermittent point sources of bioluminescent light. In this study, we investigate the diversity of the visual system of the lanternfish (Myctophidae). We focus specifically on the photoreceptor cells by examining their size, arrangement, topographic distribution and contribution to optical sensitivity in 53 different species from 18 genera. We also examine the influence(s) of both phylogeny and ecology on these photoreceptor variables using phylogenetic comparative analyses in order to understand the constraints placed on the visual systems of this large group of mesopelagic fishes at the first stage of retinal processing. We report great diversity in the visual system of the Myctophidae at the level of the photoreceptors. Photoreceptor distribution reveals clear interspecific differences in visual specialisations (areas of high rod photoreceptor density), indicating potential interspecific differences in interactions with prey, predators and/or mates. A great diversity in photoreceptor design (length and diameter) and density is also present. Overall, the myctophid eye is very sensitive compared to other teleosts and each species seems to be specialised for the detection of a specific signal (downwelling light or bioluminescence), potentially reflecting different visual demands for survival. Phylogenetic comparative analyses highlight several relationships between photoreceptor characteristics and the ecological variables tested (depth distribution and luminous tissue patterns). Depth distribution at night was a significant factor in most of the models tested, indicating that vision at night is of great importance for lanternfishes and may drive the evolution of their photoreceptor design. PMID:24927016

A scintillating gas detector for 2D dose measurements in clinical carbon beams

NASA Astrophysics Data System (ADS)

Seravalli, E.; de Boer, M.; Geurink, F.; Huizenga, J.; Kreuger, R.; Schippers, J. M.; van Eijk, C. W. E.; Voss, B.

2008-09-01

A two-dimensional position sensitive dosimetry system based on a scintillating gas detector has been developed for pre-treatment verification of dose distributions in hadron therapy. The dosimetry system consists of a chamber filled with an Ar/CF4 scintillating gas mixture, inside which two cascaded gas electron multipliers (GEMs) are mounted. A GEM is a thin kapton foil with copper cladding structured with a regular pattern of sub-mm holes. The primary electrons, created in the detector's sensitive volume by the incoming beam, drift in an electric field towards the GEMs and undergo gas multiplication in the GEM holes. During this process, photons are emitted by the excited Ar/CF4 gas molecules and detected by a mirror-lens-CCD camera system. Since the amount of emitted light is proportional to the dose deposited in the sensitive volume of the detector by the incoming beam, the intensity distribution of the measured light spot is proportional to the 2D hadron dose distribution. For a measurement of a 3D dose distribution, the scintillating gas detector is mounted at the beam exit side of a water-bellows phantom, whose thickness can be varied in steps. In this work, the energy dependence of the output signal of the scintillating gas detector has been verified in a 250 MeV/u clinical 12C ion beam by means of a depth-dose curve measurement. The underestimation of the measured signal at the Bragg peak depth is only 9% with respect to an air-filled ionization chamber. This is much smaller than the underestimation found for a scintillating Gd2O2S:Tb ('Lanex') screen under the same measurement conditions (43%). Consequently, the scintillating gas detector is a promising device for verifying dose distributions in high LET beams, for example to check hadron therapy treatment plans which comprise beams with different energies.

Tsunamigenic earthquake simulations using experimentally derived friction laws

NASA Astrophysics Data System (ADS)

Murphy, S.; Di Toro, G.; Romano, F.; Scala, A.; Lorito, S.; Spagnuolo, E.; Aretusini, S.; Festa, G.; Piatanesi, A.; Nielsen, S.

2018-03-01

Seismological, tsunami and geodetic observations have shown that subduction zones are complex systems where the properties of earthquake rupture vary with depth as a result of different pre-stress and frictional conditions. A wealth of earthquakes of different sizes and different source features (e.g. rupture duration) can be generated in subduction zones, including tsunami earthquakes, some of which can produce extreme tsunamigenic events. Here, we offer a geological perspective principally accounting for depth-dependent frictional conditions, while adopting a simplified distribution of on-fault tectonic pre-stress. We combine a lithology-controlled, depth-dependent experimental friction law with 2D elastodynamic rupture simulations for a Tohoku-like subduction zone cross-section. Subduction zone fault rocks are dominantly incohesive and clay-rich near the surface, transitioning to cohesive and more crystalline at depth. By randomly shifting along fault dip the location of the high shear stress regions ("asperities"), moderate to great thrust earthquakes and tsunami earthquakes are produced that are quite consistent with seismological, geodetic, and tsunami observations. As an effect of depth-dependent friction in our model, slip is confined to the high stress asperity at depth; near the surface rupture is impeded by the rock-clay transition constraining slip to the clay-rich layer. However, when the high stress asperity is located in the clay-to-crystalline rock transition, great thrust earthquakes can be generated similar to the Mw 9 Tohoku (2011) earthquake.

Contributions of depth filter components to protein adsorption in bioprocessing.

PubMed

Khanal, Ohnmar; Singh, Nripen; Traylor, Steven J; Xu, Xuankuo; Ghose, Sanchayita; Li, Zheng J; Lenhoff, Abraham M

2018-04-16

Depth filtration is widely used in downstream bioprocessing to remove particulate contaminants via depth straining and is therefore applied to harvest clarification and other processing steps. However, depth filtration also removes proteins via adsorption, which can contribute variously to impurity clearance and to reduction in product yield. The adsorption may occur on the different components of the depth filter, that is, filter aid, binder, and cellulose filter. We measured adsorption of several model proteins and therapeutic proteins onto filter aids, cellulose, and commercial depth filters at pH 5-8 and ionic strengths <50 mM and correlated the adsorption data to bulk measured properties such as surface area, morphology, surface charge density, and composition. We also explored the role of each depth filter component in the adsorption of proteins with different net charges, using confocal microscopy. Our findings show that a complete depth filter's maximum adsorptive capacity for proteins can be estimated by its protein monolayer coverage values, which are of order mg/m 2 , depending on the protein size. Furthermore, the extent of adsorption of different proteins appears to depend on the nature of the resin binder and its extent of coating over the depth filter surface, particularly in masking the cation-exchanger-like capacity of the siliceous filter aids. In addition to guiding improved depth filter selection, the findings can be leveraged in inspiring a more intentional selection of components and design of depth filter construction for particular impurity removal targets. © 2018 Wiley Periodicals, Inc.

Femtosecond laser ablation-based mass spectrometry. An ideal tool for stoichiometric analysis of thin films

DOE PAGES

LaHaye, Nicole L.; Kurian, Jose; Diwakar, Prasoon K.; ...

2015-08-19

An accurate and routinely available method for stoichiometric analysis of thin films is a desideratum of modern materials science where a material’s properties depend sensitively on elemental composition. We thoroughly investigated femtosecond laser ablation-inductively coupled plasma-mass spectrometry (fs-LA-ICP-MS) as an analytical technique for determination of the stoichiometry of thin films down to the nanometer scale. The use of femtosecond laser ablation allows for precise removal of material with high spatial and depth resolution that can be coupled to an ICP-MS to obtain elemental and isotopic information. We used molecular beam epitaxy-grown thin films of LaPd (x)Sb 2 and T´-La 2CuOmore » 4 to demonstrate the capacity of fs-LA-ICP-MS for stoichiometric analysis and the spatial and depth resolution of the technique. Here we demonstrate that the stoichiometric information of thin films with a thickness of ~10 nm or lower can be determined. Furthermore, our results indicate that fs-LA-ICP-MS provides precise information on the thin film-substrate interface and is able to detect the interdiffusion of cations.« less

Sensitivity of EAS measurements to the energy spectrum of muons

NASA Astrophysics Data System (ADS)

Espadanal, J.; Cazon, L.; Conceição, R.

2017-01-01

We have studied how the energy spectrum of muons at production affects some of the most common measurements related to muons in extensive air shower studies, namely, the number of muons at the ground, the slope of the lateral distribution of muons, the apparent muon production depth, and the arrival time delay of muons at ground. We found that by changing the energy spectrum by an amount consistent with the difference between current models (namely EPOS-LHC and QGSJET-II.04), the muon surface density at ground increases 5% at 20° zenith angle and 17% at 60° zenith angle. This effect introduces a zenith angle dependence on the reconstructed number of muons which might be experimentally observed. The maximum of the muon production depth distribution at 40° increases ∼ 10 g/cm2 and ∼ 0 g/cm2 at 60°, which, from pure geometrical considerations, increases the arrival time delay of muons. There is an extra contribution to the delay due to the subluminal velocities of muons of the order of ∼ 3 ns at all zenith angles. Finally, changes introduced in the logarithmic slope of the lateral density function are less than 2%.

In vivo photoacoustic imaging of uterine cervical lesion and its image processing based on light propagation in biological medium

NASA Astrophysics Data System (ADS)

Okawa, Shinpei; Sei, Kiguna; Hirasawa, Takeshi; Irisawa, Kaku; Hirota, Kazuhiro; Wada, Takatsugu; Kushibiki, Toshihiro; Furuya, Kenichi; Ishihara, Miya

2017-03-01

For diagnosis of cervical cancer, screening by colposcope and successive biopsy are usually carried out. Colposcope, which is a mesoscope, is used to examine surface of the cervix and to find precancerous lesion grossly. However, the accuracy of colposcopy depends on the skills of the examiner and is inconsistent as a result. Additionally, colposcope lacks depth information. It is known that microvessel density and blood flow in cervical lesion increases associated with angiogenesis. Therefore, photoacoustic imaging (PAI) to detect angiogenesis in cervical lesion has been studied. PAI can diagnose cervical lesion sensitively and provide depth information. The authors have been investigating the efficacy of PAI in the diagnoses of the cervical lesion and cancer by use of the PAI and ultrasonography system with transvaginal probe developed by Fujifilm Corporation. For quantitative diagnosis by use of PAI, it is required to take the light propagation in biological medium into account. The image reconstruction of the absorption coefficient from the PA image of cervix by use of the simulation of light propagation based on finite element method has been tried in this study. Numerical simulation, phantom experiment and in vivo imaging were carried out.

The TINS Lecture. The parietal association cortex in depth perception and visual control of hand action.

PubMed

Sakata, H; Taira, M; Kusunoki, M; Murata, A; Tanaka, Y

1997-08-01

Recent neurophysiological studies in alert monkeys have revealed that the parietal association cortex plays a crucial role in depth perception and visually guided hand movement. The following five classes of parietal neurons covering various aspects of these functions have been identified: (1) depth-selective visual-fixation (VF) neurons of the inferior parietal lobule (IPL), representing egocentric distance; (2) depth-movement sensitive (DMS) neurons of V5A and the ventral intraparietal (VIP) area representing direction of linear movement in 3-D space; (3) depth-rotation-sensitive (RS) neurons of V5A and the posterior parietal (PP) area representing direction of rotary movement in space; (4) visually responsive manipulation-related neurons (visual-dominant or visual-and-motor type) of the anterior intraparietal (AIP) area, representing 3-D shape or orientation (or both) of objects for manipulation; and (5) axis-orientation-selective (AOS) and surface-orientation-selective (SOS) neurons in the caudal intraparietal sulcus (cIPS) sensitive to binocular disparity and representing the 3-D orientation of the longitudinal axes and flat surfaces, respectively. Some AOS and SOS neurons are selective in both orientation and shape. Thus the dorsal visual pathway is divided into at least two subsystems, V5A, PP and VIP areas for motion vision and V6, LIP and cIPS areas for coding position and 3-D features. The cIPS sends the signals of 3-D features of objects to the AIP area, which is reciprocally connected to the ventral premotor (F5) area and plays an essential role in matching hand orientation and shaping with 3-D objects for manipulation.

Experimental and ecosystem model approach to assessing the sensitivity of High arctic deep permafrost to changes in surface temperature and precipitation

NASA Astrophysics Data System (ADS)

Rasmussen, L. H.; Zhang, W.; Elberling, B.; Cable, S.

2016-12-01

Permafrost affected areas in Greenland are expected to experience large temperature increases within the 21st century. Most previous studies on permafrost consider near-surface soil, where changes will happen first. However, how sensitive the deep permafrost temperature is to near-surface conditions through changes in soil thermal properties, snow depth and soil moisture, is not known. In this study, we measured the sensitivity of thermal conductivity (TC) to gravimetric water content (GWC) in frozen and thawed deep permafrost sediments from deltaic, alluvial and fluvial depositional environments in the Zackenberg valley, NE Greenland. We also calibrated a coupled heat and water transfer model, the "CoupModel", for the two closely situated deltaic sites, one with average snow depth and the other with topographic snow accumulation. With the calibrated model, we simulated deep permafrost thermal dynamics in four scenarios with changes in surface forcing: a. 3 °C warming and 20 % increase in precipitation; b. 3 °C warming and 100 % increase in precipitation; c. 6 °C warming and 20 % increase in precipitation; d. 6 °C warming and 100 % increase in precipitation.Our results indicated that frozen sediments had higher TC than thawed sediments. All sediments showed a positive linear relation between TC and soil moisture when frozen, and a logarithmic one when thawed. Fluvial sediments had high sensitivity, but never reached above 12 % GWC, indicating a field effect of water retention capacity. Alluvial sediments were less sensitive to soil moisture than deltaic and fluvial sediments, indicating the importance of unfrozen water in frozen sediment. The deltaic site with snow accumulation had 1 °C higher annual mean ground temperature than the average snow site. The soil temperature at the depth of 18 m increased with 1.5 °C and 3.5 °C in the scenarios with 3 °C and 6 °C warming, respectively. Precipitation had no significant additional effect to warming. We conclude that below-ground sediment properties affect the sensitivity of TC to GWC, that surface temperature changes can significantly affect the deep permafrost within a short period, and that differences in snow depth affect surface temperatures. Geology, pedology and precipitation should thus be considered if estimating future High arctic deep permafrost sensitivity.

Real-time optically sectioned wide-field microscopy employing structured light illumination and a CMOS detector

NASA Astrophysics Data System (ADS)

Mitic, Jelena; Anhut, Tiemo; Serov, Alexandre; Lasser, Theo; Bourquin, Stephane

2003-07-01

Real-time optically sectioned microscopy is demonstrated using an AC-sensitive detection concept realized with smart CMOS image sensor and structured light illumination by a continuously moving periodic pattern. We describe two different detection systems based on CMOS image sensors for the detection and on-chip processing of the sectioned images in real time. A region-of-interest is sampled at high frame rate. The demodulated signal delivered by the detector corresponds to the depth discriminated image of the sample. The measured FWHM of the axial response depends on the spatial frequency of the projected grid illumination and is in the μm-range. The effect of using broadband incoherent illumination is discussed. The performance of these systems is demonstrated by imaging technical as well as biological samples.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ballouz, Ronald-Louis; Richardson, Derek C.; Morishima, Ryuji

We study the B ring’s complex optical depth structure. The source of this structure may be the complex dynamics of the Keplerian shear and the self-gravity of the ring particles. The outcome of these dynamic effects depends sensitively on the collisional and physical properties of the particles. Two mechanisms can emerge that dominate the macroscopic physical structure of the ring: self-gravity wakes and viscous overstability. Here we study the interplay between these two mechanisms by using our recently developed particle collision method that allows us to better model the inter-particle contact physics. We find that for a constant ring surfacemore » density and particle internal density, particles with rough surfaces tend to produce axisymmetric ring features associated with the viscous overstability, while particles with smoother surfaces produce self-gravity wakes.« less

Three-dimensional information hierarchical encryption based on computer-generated holograms

NASA Astrophysics Data System (ADS)

Kong, Dezhao; Shen, Xueju; Cao, Liangcai; Zhang, Hao; Zong, Song; Jin, Guofan

2016-12-01

A novel approach for encrypting three-dimensional (3-D) scene information hierarchically based on computer-generated holograms (CGHs) is proposed. The CGHs of the layer-oriented 3-D scene information are produced by angular-spectrum propagation algorithm at different depths. All the CGHs are then modulated by different chaotic random phase masks generated by the logistic map. Hierarchical encryption encoding is applied when all the CGHs are accumulated one by one, and the reconstructed volume of the 3-D scene information depends on permissions of different users. The chaotic random phase masks could be encoded into several parameters of the chaotic sequences to simplify the transmission and preservation of the keys. Optical experiments verify the proposed method and numerical simulations show the high key sensitivity, high security, and application flexibility of the method.

An analytical two-flow model to simulate the distribution of irradiance in coastal waters with a wind-roughed surface and bottom reflectance

NASA Astrophysics Data System (ADS)

Ma, Wei-Ming

1997-06-01

An analytical two-flow model is derived from the radiative transfer equation to simulate the distribution of irradiance in coastal waters with a wind-roughed surface and bottom reflectance. The model utilizes unique boundary conditions, including the surface slope of the downwelling and upwelling irradiance as well as the influence of wind and bottom reflectance on simulated surface reflectance. The developed model provides a simple mathematical concept for understanding the irradiant light flux and associated processes in coastal or fresh water as well as turbid estuarine waters. The model is applied to data from the Banana River and coastal Atlantic Ocean water off the east coast of central Florida, USA. The two-flow irradiance model is capable of simulating realistic above-surface reflectance signatures under wind-roughened air-water surface given realistic input parameters including a specular flux conversion coefficient, absorption coefficient, backscattering coefficient, atmospheric visibility, bottom reflectance, and water depth. The root-mean-squared error of the calculated above-surface reflectances is approximately 3% in the Banana River and is less than 15% in coastal Atlantic Ocean off the east of Florida. Result of the subsurface reflectance sensitivity analysis indicates that the specular conversion coefficient is the most sensitive parameter in the model, followed by the beam attenuation coefficient, absorption coefficient, water depth, backscattering coefficient, specular irradiance, diffuse irradiance, bottom reflectance, and wind speed. On the other hand, result of the above-surface reflectance sensitivity analysis indicates that the wind speed is the most important parameter, followed by bottom reflectance, attenuation coefficient, water depth, conversion coefficient, specular irradiance, downwelling irradiance, absorption coefficient, and backscattering coefficient. Model results depend on the accuracy of these parameters to a large degree and more important the water depth and value of the bottom reflectance. The results of this work indicates little change of subsurface or in-water reflectances, due to variations of wind speed and observation angle. Simulations of the wind effect on the total downwelling irradiance from the two- flow model indicates that the total downwelling irradiance just below a wind-roughened water surface increases to about 1% of the total downwelling irradiance on a calm water surface when the sun is near zenith and increases to about 3% when the sun is near the horizon. This analytically based model, solved or developed utilizing the unique boundary conditions, can be applied to remote sensing of oceanic upper mixed layer dynamics, plant canopies, primary production, and shallow water environments with different bottom type reflectances. Future applications may include determining effects of sediment resuspension of bottom sediments in the bottom boundary layer on remotely sensed data.

Finding the position of tumor inhomogeneities in a gel-like model of a human breast using 3-D pulsed digital holography.

PubMed

Hernández-Montes, Maria del Socorro; Pérez-López, Carlos; Santoyo, Fernando Mendoza

2007-01-01

3-D pulsed digital holography is a noninvasive optical method used to measure the depth position of breast tumor tissue immersed in a semisolid gel model. A master gel without inhomogeneities is set to resonate at an 810 Hz frequency; then, an identically prepared gel with an inhomogeneity is interrogated with the same resonant frequency in the original setup. Comparatively, and using only an out-of-plane sensitive setup, gel surface displacement can be measured, evidencing an internal inhomogeneity. However, the depth position cannot be measured accurately, since the out-of-plane component has the contribution of in-plane surface displacements. With the information gathered, three sensitivity vectors can be obtained to separate contributions from x, y, and z vibration displacement components, individual displacement maps for the three orthogonal axes can be built, and the inhomogeneity's depth position can be accurately measured. Then, the displacement normal to the gel surface is used to find the depth profile and its cross section. Results from the optical data obtained are compared and correlated to the inhomogeneity's physically measured position. Depth position is found with an error smaller than 1%. The inhomogeneity and its position within the gel can be accurately found, making the method a promising noninvasive alternative to study mammary tumors.

SU-E-T-451: Accuracy and Application of the Standard Imaging W1 Scintillator Dosimeter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kowalski, M; McEwen, M

2014-06-01

Purpose: To evaluate the Standard Imaging W1 scintillator dosimeter in a range of clinical radiation beams to determine its range of possible applications. Methods: The W1 scintillator is a small perturbation-free dosimeter which is of interest in absolute and relative clinical dosimetry due to its small size and water equivalence. A single version of this detector was evaluated in Co-60 and linac photon and electron beams to investigate the following: linearity, sensitivity, precision, and dependence on electrometer type. In addition, depth-dose and cross-plane profiles were obtained in both photon and electron beams and compared with data obtained with wellbehaved ionizationmore » chambers. Results: In linac beams the precision and linearity was very impressive, with typical values of 0.3% and 0.1% respectively. Performance in a Co-60 beam was much poorer (approximately three times worse) and it is not clear whether this is due to the lower signal current or the effect of the continuous beam (rather than pulsed beam of the linac measurements). There was no significant difference in the detector reading when using either the recommended SI Supermax electrometer or two independent high-quality electrometers, except for low signal levels, where the Supermax exhibited an apparent threshold effect, preventing the measurement of the bremsstrahlung background in electron depth-dose curves. Comparisons with ion chamber measurements in linac beams were somewhat variable: good agreement was seen for cross-profiles (photon and electron beams) and electron beam depth-dose curves, generally within the 0.3% precision of the scintillator but systematic differences were observed as a function of measurement depth in photon beam depth-dose curves. Conclusion: A first look would suggest that the W1 scintillator has applications beyond small field dosimetry but performance appears to be limited to higher doserate and/or pulsed radiation beams. Further work is required to resolve discrepancies compared to ion chambers.« less

Understanding EROS2 observations toward the spiral arms within a classical Galactic model framework

NASA Astrophysics Data System (ADS)

Moniez, M.; Sajadian, S.; Karami, M.; Rahvar, S.; Ansari, R.

2017-08-01

Aims: EROS (Expérience de Recherche d'Objets Sombres) has searched for microlensing toward four directions in the Galactic plane away from the Galactic center. The interpretation of the catalog optical depth is complicated by the spread of the source distance distribution. We compare the EROS microlensing observations with Galactic models (including the Besançon model), tuned to fit the EROS source catalogs, and take into account all observational data such as the microlensing optical depth, the Einstein crossing durations, and the color and magnitude distributions of the catalogued stars. Methods: We simulated EROS-like source catalogs using the HIgh-Precision PARallax COllecting Satellite (Hipparcos) database, the Galactic mass distribution, and an interstellar extinction table. Taking into account the EROS star detection efficiency, we were able to produce simulated color-magnitude diagrams that fit the observed diagrams. This allows us to estimate average microlensing optical depths and event durations that are directly comparable with the measured values. Results: Both the Besançon model and our Galactic model allow us to fully understand the EROS color-magnitude data. The average optical depths and mean event durations calculated from these models are in reasonable agreement with the observations. Varying the Galactic structure parameters through simulation, we were also able to deduce contraints on the kinematics of the disk, the disk stellar mass function (at a few kpc distance from the Sun), and the maximum contribution of a thick disk of compact objects in the Galactic plane (Mthick< 5 - 7 × 1010M⊙ at 95%, depending on the model). We also show that the microlensing data toward one of our monitored directions are significantly sensitive to the Galactic bar parameters, although much larger statistics are needed to provide competitive constraints. Conclusions: Our simulation gives a better understanding of the lens and source spatial distributions in the microlensing events. The goodness of a global fit taking into account all the observables (from the color-magnitude diagrams and microlensing observations) shows the validity of the Galactic models. Our tests with the parameters excursions show the unique sensitivity of the microlensing data to the kinematical parameters and stellar initial mass function. http://www.lal.in2p3.fr/recherche/eros

Study of blood flow sensing with microwave radiometry

NASA Technical Reports Server (NTRS)

Porter, R. A.; Wentz, F. J., III

1973-01-01

A study and experimental investigation has been performed to determine the feasibility of measuring regional blood flow and volume in man by means of microwave radiometry. An indication was expected of regional blood flow from measurement of surface and subsurface temperatures with a sensitive radiometer. Following theoretical modeling of biological tissue, to determine the optimum operating frequency for adequate sensing depth, a sensitive microwave radiometer was designed for operation at 793 MHz. A temperature sensitivity of of 0.06 K rms was realized in this equipment. Measurements performed on phantom tissue models, consisting of beef fat and lean beefsteak showed that the radiometer was capable of sensing temperatures from a depth between 3.8 and 5.1 cm. Radiometric and thermodynamic temperature measurements were also performed on the hind thighs of large dogs. These showed that the radiometer could sense subsurface temperatures from a depth of, at least, 1.3 cm. Delays caused by externally-generated RF interference, coupled with the lack of reliable blood flow measurement equipment, prevented correlation of radiometer readings with reginal blood flow. For the same reasons, it was not possible to extend the radiometric observations to human subjects.

Minimization of the Total Depth of Internal Saw-Tooth Reliefs of a Two-Layer Relief-Phase Diffraction Microstructure

NASA Astrophysics Data System (ADS)

Greisukh, G. I.; Danilov, V. A.; Stepanov, S. A.; Antonov, A. I.; Usievich, B. A.

2018-01-01

Results of studying the possibility to decrease the total depth of reliefs of a two-layer microstructure having two internal saw-tooth microreliefs reducing the dependence of the diffraction efficiency of the microstructure on the radiation wavelength and angle of radiation incidence on the microstructure are presented. These results allow one to minimize the complexity of obtaining optimum microrelief depths depending on requirements applicable to the diffraction optical element in the framework of the electromagnetic-diffraction theory. Optimum depths provide in the specified spectral range and interval of angles of radiation incidence the maximum possible (for the chosen width of the narrowest zone of the saw-tooth microrelief) value of the diffraction efficiency at the point of its minimum.

Optimization of geometric characteristics to improve sensing performance of MEMS piezoresistive strain sensors

NASA Astrophysics Data System (ADS)

Mohammed, Ahmed A. S.; Moussa, Walied A.; Lou, Edmond

2010-01-01

In this paper, the design of MEMS piezoresistive strain sensor is described. ANSYS®, finite element analysis (FEA) software, was used as a tool to model the performance of the silicon-based sensor. The incorporation of stress concentration regions (SCRs), to localize stresses, was explored in detail. This methodology employs the structural design of the sensor silicon carrier. Therefore, the induced strain in the sensing chip yielded stress concentration in the vicinity of the SCRs. Hence, this concept was proved to enhance the sensor sensitivity. Another advantage of the SCRs is to reduce the sensor transverse gauge factor, which offered a great opportunity to develop a MEMS sensor with minimal cross sensitivity. Two basic SCR designs were studied. The depth of the SCRs was also investigated. Moreover, FEA simulation is utilized to investigate the effect of the sensing element depth on the sensor sensitivity. Simulation results showed that the sensor sensitivity is independent of the piezoresistors' depth. The microfabrication process flow was introduced to prototype the different sensor designs. The experiments covered operating temperature range from -50 °C to +50 °C. Finally, packaging scheme and bonding adhesive selection were discussed. The experimental results showed good agreement with the FEA simulation results. The findings of this study confirmed the feasibility of introducing SCRs in the sensor silicon carrier to improve the sensor sensitivity while using relatively high doping levels (5 × 1019 atoms cm-3). The fabricated sensors have a gauge factor about three to four times higher compared to conventional thin-foil strain gauges.

USGS Polar Temperature Logging System, Description and Measurement Uncertainties

USGS Publications Warehouse

Clow, Gary D.

2008-01-01

This paper provides an updated technical description of the USGS Polar Temperature Logging System (PTLS) and a complete assessment of the measurement uncertainties. This measurement system is used to acquire subsurface temperature data for climate-change detection in the polar regions and for reconstructing past climate changes using the 'borehole paleothermometry' inverse method. Specifically designed for polar conditions, the PTLS can measure temperatures as low as -60 degrees Celsius with a sensitivity ranging from 0.02 to 0.19 millikelvin (mK). A modular design allows the PTLS to reach depths as great as 4.5 kilometers with a skid-mounted winch unit or 650 meters with a small helicopter-transportable unit. The standard uncertainty (uT) of the ITS-90 temperature measurements obtained with the current PTLS range from 3.0 mK at -60 degrees Celsius to 3.3 mK at 0 degrees Celsius. Relative temperature measurements used for borehole paleothermometry have a standard uncertainty (urT) whose upper limit ranges from 1.6 mK at -60 degrees Celsius to 2.0 mK at 0 degrees Celsius. The uncertainty of a temperature sensor's depth during a log depends on specific borehole conditions and the temperature near the winch and thus must be treated on a case-by-case basis. However, recent experience indicates that when logging conditions are favorable, the 4.5-kilometer system is capable of producing depths with a standard uncertainty (uZ) on the order of 200-250 parts per million.

Climate controls on C3 vs. C4 productivity in North American grasslands from carbon isotope composition of soil organic matter

USGS Publications Warehouse

von Fischer, J.C.; Tieszen, L.L.; Schimel, D.S.

2008-01-01

We analyzed the ??13 C of soil organic matter (SOM) and fine roots from 55 native grassland sites widely distributed across the US and Canadian Great Plains to examine the relative production of C3 vs. C4 plants (hereafter %C4) at the continental scale. Our climate vs. %C4 results agreed well with North American field studies on %C4, but showed bias with respect to %C4 from a US vegetation database (statsgo) and weak agreement with a physiologically based prediction that depends on crossover temperature. Although monthly average temperatures have been used in many studies to predict %C4, our analysis shows that high temperatures are better predictors of %C4. In particular, we found that July climate (average of daily high temperature and month's total rainfall) predicted %C4 better than other months, seasons or annual averages, suggesting that the outcome of competition between C3 and C4 plants in North American grasslands was particularly sensitive to climate during this narrow window of time. Root ??13 C increased about 1??? between the A and B horizon, suggesting that C 4 roots become relatively more common than C3 roots with depth. These differences in depth distribution likely contribute to the isotopic enrichment with depth in SOM where both C3 and C4 grasses are present. ?? 2008 The Authors Journal compilation ?? 2008 Blackwell Publishing Ltd.

Structured illumination assisted microdeflectometry with optical depth scanning capability

PubMed Central

Lu, Sheng-Huei; Hua, Hong

2018-01-01

Microdeflectometry is a powerful noncontact tool for measuring nanometer defects on a freeform surface. However, it requires a time-consuming process to take measurements at different depths for an extended depth of field (EDOF) and lacks surface information for integrating the measured gradient data to height. We propose an optical depth scanning technique to speed up the measurement process and introduce the structured illumination technique to efficiently determine the focused data among 3D observation and provide surface orientations for reconstructing an unknown surface shape. We demonstrated 3D measurements with an equivalent surface height sensitivity of 7.21 nm and an EDOF of at least 250 μm, which is 15 times that of the diffraction limited depth range. PMID:27607986

14 CFR 171.107 - Definition.

Code of Federal Regulations, 2012 CFR

2012-01-01

... modulation depth of the smaller signal, divided by 100. Angular displacement sensitivity means the ratio of measured DDM to the corresponding angular displacement from the appropriate reference line. Back course... nearest to the course line at which the DDM is 0.155. Displacement sensitivity means the ratio of measured...

14 CFR 171.107 - Definition.

Code of Federal Regulations, 2011 CFR

2011-01-01

... modulation depth of the smaller signal, divided by 100. Angular displacement sensitivity means the ratio of measured DDM to the corresponding angular displacement from the appropriate reference line. Back course... nearest to the course line at which the DDM is 0.155. Displacement sensitivity means the ratio of measured...

14 CFR 171.107 - Definition.

Code of Federal Regulations, 2013 CFR

2013-01-01

... modulation depth of the smaller signal, divided by 100. Angular displacement sensitivity means the ratio of measured DDM to the corresponding angular displacement from the appropriate reference line. Back course... nearest to the course line at which the DDM is 0.155. Displacement sensitivity means the ratio of measured...

14 CFR 171.107 - Definition.

Code of Federal Regulations, 2010 CFR

2010-01-01

... modulation depth of the smaller signal, divided by 100. Angular displacement sensitivity means the ratio of measured DDM to the corresponding angular displacement from the appropriate reference line. Back course... nearest to the course line at which the DDM is 0.155. Displacement sensitivity means the ratio of measured...

14 CFR 171.107 - Definition.

Code of Federal Regulations, 2014 CFR

2014-01-01

... modulation depth of the smaller signal, divided by 100. Angular displacement sensitivity means the ratio of measured DDM to the corresponding angular displacement from the appropriate reference line. Back course... nearest to the course line at which the DDM is 0.155. Displacement sensitivity means the ratio of measured...

Stepwise sensitivity analysis from qualitative to quantitative: Application to the terrestrial hydrological modeling of a Conjunctive Surface-Subsurface Process (CSSP) land surface model

NASA Astrophysics Data System (ADS)

Gan, Yanjun; Liang, Xin-Zhong; Duan, Qingyun; Choi, Hyun Il; Dai, Yongjiu; Wu, Huan

2015-06-01

An uncertainty quantification framework was employed to examine the sensitivities of 24 model parameters from a newly developed Conjunctive Surface-Subsurface Process (CSSP) land surface model (LSM). The sensitivity analysis (SA) was performed over 18 representative watersheds in the contiguous United States to examine the influence of model parameters in the simulation of terrestrial hydrological processes. Two normalized metrics, relative bias (RB) and Nash-Sutcliffe efficiency (NSE), were adopted to assess the fit between simulated and observed streamflow discharge (SD) and evapotranspiration (ET) for a 14 year period. SA was conducted using a multiobjective two-stage approach, in which the first stage was a qualitative SA using the Latin Hypercube-based One-At-a-Time (LH-OAT) screening, and the second stage was a quantitative SA using the Multivariate Adaptive Regression Splines (MARS)-based Sobol' sensitivity indices. This approach combines the merits of qualitative and quantitative global SA methods, and is effective and efficient for understanding and simplifying large, complex system models. Ten of the 24 parameters were identified as important across different watersheds. The contribution of each parameter to the total response variance was then quantified by Sobol' sensitivity indices. Generally, parameter interactions contribute the most to the response variance of the CSSP, and only 5 out of 24 parameters dominate model behavior. Four photosynthetic and respiratory parameters are shown to be influential to ET, whereas reference depth for saturated hydraulic conductivity is the most influential parameter for SD in most watersheds. Parameter sensitivity patterns mainly depend on hydroclimatic regime, as well as vegetation type and soil texture. This article was corrected on 26 JUN 2015. See the end of the full text for details.

Impact of oxygen diffusion on superconductivity in YBa2Cu3O7 -δ thin films studied by positron annihilation spectroscopy

NASA Astrophysics Data System (ADS)

Reiner, M.; Gigl, T.; Jany, R.; Hammerl, G.; Hugenschmidt, C.

2018-04-01

The oxygen deficiency δ in YBa2Cu3O7 -δ (YBCO) plays a crucial role for affecting high-temperature superconductivity. We apply (coincident) Doppler broadening spectroscopy of the electron-positron annihilation line to study in situ the temperature dependence of the oxygen concentration and its depth profile in single crystalline YBCO film grown on SrTiO3 (STO) substrates. The oxygen diffusion during tempering is found to lead to a distinct depth dependence of δ , which is not accessible using x-ray diffraction. A steady state reached within a few minutes is defined by both, the oxygen exchange at the surface and at the interface to the STO substrate. Moreover, we reveal the depth-dependent critical temperature Tc in the as prepared and tempered YBCO film.

Inverse finite element methods for extracting elastic-poroviscoelastic properties of cartilage and other soft tissues from indentation

NASA Astrophysics Data System (ADS)

Namani, Ravi

Mechanical properties are essential for understanding diseases that afflict various soft tissues, such as osteoarthritic cartilage and hypertension which alters cardiovascular arteries. Although the linear elastic modulus is routinely measured for hard materials, standard methods are not available for extracting the nonlinear elastic, linear elastic and time-dependent properties of soft tissues. Consequently, the focus of this work is to develop indentation methods for soft biological tissues; since analytical solutions are not available for the general context, finite element simulations are used. First, parametric studies of finite indentation of hyperelastic layers are performed to examine if indentation has the potential to identify nonlinear elastic behavior. To answer this, spherical, flat-ended conical and cylindrical tips are examined and the influence of thickness is exploited. Also the influence of the specimen/substrate boundary condition (slip or non-slip) is clarified. Second, a new inverse method---the hyperelastic extraction algorithm (HPE)---was developed to extract two nonlinear elastic parameters from the indentation force-depth data, which is the basic measurement in an indentation test. The accuracy of the extracted parameters and the influence of noise in measurements on this accuracy were obtained. This showed that the standard Berkovitch tip could only extract one parameter with sufficient accuracy, since the indentation force-depth curve has limited sensitivity to both nonlinear elastic parameters. Third, indentation methods for testing tissues from small animals were explored. New methods for flat-ended conical tips are derived. These account for practical test issues like the difficulty in locating the surface or soft specimens. Also, finite element simulations are explored to elucidate the influence of specimen curvature on the indentation force-depth curve. Fourth, the influence of inhomogeneity and material anisotropy on the extracted "average" linear elastic modulus was studied. The focus here is on murine tibial cartilage, since recent experiments have shown that the modulus measured by a 15 mum tip is considerably larger than that obtained from a 90 mum tip. It is shown that a depth-dependent modulus could give rise to such a size effect. Lastly, parametric studies were performed within the small strain setting to understand the influence of permeability and viscoelastic properties on the indentation stress-relaxation response. The focus here is on cartilage, and specific test protocols (single-step vs. multi-step stress relaxation) are explored. An inverse algorithm was developed to extract the poroviscoelastic parameters. A sensitivity study using this algorithm shows that the instantaneous elastic modulus (which is a measure of the viscous relaxation) can be extracted with very good accuracy, but the permeability and long-time relaxation constant cannot be extracted with good accuracy. The thesis concludes with implications of these studies. The potential and limitations of indentation tests for studying cartilage and other soft tissues is discussed.

Sensitivity analysis of urban flood flows to hydraulic controls

NASA Astrophysics Data System (ADS)

Chen, Shangzhi; Garambois, Pierre-André; Finaud-Guyot, Pascal; Dellinger, Guilhem; Terfous, Abdelali; Ghenaim, Abdallah

2017-04-01

Flooding represents one of the most significant natural hazards on each continent and particularly in highly populated areas. Improving the accuracy and robustness of prediction systems has become a priority. However, in situ measurements of floods remain difficult while a better understanding of flood flow spatiotemporal dynamics along with dataset for model validations appear essential. The present contribution is based on a unique experimental device at the scale 1/200, able to produce urban flooding with flood flows corresponding to frequent to rare return periods. The influence of 1D Saint Venant and 2D Shallow water model input parameters on simulated flows is assessed using global sensitivity analysis (GSA). The tested parameters are: global and local boundary conditions (water heights and discharge), spatially uniform or distributed friction coefficient and or porosity respectively tested in various ranges centered around their nominal values - calibrated thanks to accurate experimental data and related uncertainties. For various experimental configurations a variance decomposition method (ANOVA) is used to calculate spatially distributed Sobol' sensitivity indices (Si's). The sensitivity of water depth to input parameters on two main streets of the experimental device is presented here. Results show that the closer from the downstream boundary condition on water height, the higher the Sobol' index as predicted by hydraulic theory for subcritical flow, while interestingly the sensitivity to friction decreases. The sensitivity indices of all lateral inflows, representing crossroads in 1D, are also quantified in this study along with their asymptotic trends along flow distance. The relationship between lateral discharge magnitude and resulting sensitivity index of water depth is investigated. Concerning simulations with distributed friction coefficients, crossroad friction is shown to have much higher influence on upstream water depth profile than street friction coefficients. This methodology could be applied to any urban flood configuration in order to better understand flow dynamics and repartition but also guide model calibration in the light of flow controls.

Melanoma Is Skin Deep: A 3D Reconstruction Technique for Computerized Dermoscopic Skin Lesion Classification

PubMed Central

Satheesha, T. Y.; Prasad, M. N. Giri; Dhruve, Kashyap D.

2017-01-01

Melanoma mortality rates are the highest amongst skin cancer patients. Melanoma is life threating when it grows beyond the dermis of the skin. Hence, depth is an important factor to diagnose melanoma. This paper introduces a non-invasive computerized dermoscopy system that considers the estimated depth of skin lesions for diagnosis. A 3-D skin lesion reconstruction technique using the estimated depth obtained from regular dermoscopic images is presented. On basis of the 3-D reconstruction, depth and 3-D shape features are extracted. In addition to 3-D features, regular color, texture, and 2-D shape features are also extracted. Feature extraction is critical to achieve accurate results. Apart from melanoma, in-situ melanoma the proposed system is designed to diagnose basal cell carcinoma, blue nevus, dermatofibroma, haemangioma, seborrhoeic keratosis, and normal mole lesions. For experimental evaluations, the PH2, ISIC: Melanoma Project, and ATLAS dermoscopy data sets is considered. Different feature set combinations is considered and performance is evaluated. Significant performance improvement is reported the post inclusion of estimated depth and 3-D features. The good classification scores of sensitivity = 96%, specificity = 97% on PH2 data set and sensitivity = 98%, specificity = 99% on the ATLAS data set is achieved. Experiments conducted to estimate tumor depth from 3-D lesion reconstruction is presented. Experimental results achieved prove that the proposed computerized dermoscopy system is efficient and can be used to diagnose varied skin lesion dermoscopy images. PMID:28512610

Commissioning dose computation models for spot scanning proton beams in water for a commercially available treatment planning system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, X. R.; Poenisch, F.; Lii, M.

2013-04-15

Purpose: To present our method and experience in commissioning dose models in water for spot scanning proton therapy in a commercial treatment planning system (TPS). Methods: The input data required by the TPS included in-air transverse profiles and integral depth doses (IDDs). All input data were obtained from Monte Carlo (MC) simulations that had been validated by measurements. MC-generated IDDs were converted to units of Gy mm{sup 2}/MU using the measured IDDs at a depth of 2 cm employing the largest commercially available parallel-plate ionization chamber. The sensitive area of the chamber was insufficient to fully encompass the entire lateralmore » dose deposited at depth by a pencil beam (spot). To correct for the detector size, correction factors as a function of proton energy were defined and determined using MC. The fluence of individual spots was initially modeled as a single Gaussian (SG) function and later as a double Gaussian (DG) function. The DG fluence model was introduced to account for the spot fluence due to contributions of large angle scattering from the devices within the scanning nozzle, especially from the spot profile monitor. To validate the DG fluence model, we compared calculations and measurements, including doses at the center of spread out Bragg peaks (SOBPs) as a function of nominal field size, range, and SOBP width, lateral dose profiles, and depth doses for different widths of SOBP. Dose models were validated extensively with patient treatment field-specific measurements. Results: We demonstrated that the DG fluence model is necessary for predicting the field size dependence of dose distributions. With this model, the calculated doses at the center of SOBPs as a function of nominal field size, range, and SOBP width, lateral dose profiles and depth doses for rectangular target volumes agreed well with respective measured values. With the DG fluence model for our scanning proton beam line, we successfully treated more than 500 patients from March 2010 through June 2012 with acceptable agreement between TPS calculated and measured dose distributions. However, the current dose model still has limitations in predicting field size dependence of doses at some intermediate depths of proton beams with high energies. Conclusions: We have commissioned a DG fluence model for clinical use. It is demonstrated that the DG fluence model is significantly more accurate than the SG fluence model. However, some deficiencies in modeling the low-dose envelope in the current dose algorithm still exist. Further improvements to the current dose algorithm are needed. The method presented here should be useful for commissioning pencil beam dose algorithms in new versions of TPS in the future.« less

Commissioning dose computation models for spot scanning proton beams in water for a commercially available treatment planning system

PubMed Central

Zhu, X. R.; Poenisch, F.; Lii, M.; Sawakuchi, G. O.; Titt, U.; Bues, M.; Song, X.; Zhang, X.; Li, Y.; Ciangaru, G.; Li, H.; Taylor, M. B.; Suzuki, K.; Mohan, R.; Gillin, M. T.; Sahoo, N.

2013-01-01

Purpose: To present our method and experience in commissioning dose models in water for spot scanning proton therapy in a commercial treatment planning system (TPS). Methods: The input data required by the TPS included in-air transverse profiles and integral depth doses (IDDs). All input data were obtained from Monte Carlo (MC) simulations that had been validated by measurements. MC-generated IDDs were converted to units of Gy mm2/MU using the measured IDDs at a depth of 2 cm employing the largest commercially available parallel-plate ionization chamber. The sensitive area of the chamber was insufficient to fully encompass the entire lateral dose deposited at depth by a pencil beam (spot). To correct for the detector size, correction factors as a function of proton energy were defined and determined using MC. The fluence of individual spots was initially modeled as a single Gaussian (SG) function and later as a double Gaussian (DG) function. The DG fluence model was introduced to account for the spot fluence due to contributions of large angle scattering from the devices within the scanning nozzle, especially from the spot profile monitor. To validate the DG fluence model, we compared calculations and measurements, including doses at the center of spread out Bragg peaks (SOBPs) as a function of nominal field size, range, and SOBP width, lateral dose profiles, and depth doses for different widths of SOBP. Dose models were validated extensively with patient treatment field-specific measurements. Results: We demonstrated that the DG fluence model is necessary for predicting the field size dependence of dose distributions. With this model, the calculated doses at the center of SOBPs as a function of nominal field size, range, and SOBP width, lateral dose profiles and depth doses for rectangular target volumes agreed well with respective measured values. With the DG fluence model for our scanning proton beam line, we successfully treated more than 500 patients from March 2010 through June 2012 with acceptable agreement between TPS calculated and measured dose distributions. However, the current dose model still has limitations in predicting field size dependence of doses at some intermediate depths of proton beams with high energies. Conclusions: We have commissioned a DG fluence model for clinical use. It is demonstrated that the DG fluence model is significantly more accurate than the SG fluence model. However, some deficiencies in modeling the low-dose envelope in the current dose algorithm still exist. Further improvements to the current dose algorithm are needed. The method presented here should be useful for commissioning pencil beam dose algorithms in new versions of TPS in the future. PMID:23556893

Commissioning dose computation models for spot scanning proton beams in water for a commercially available treatment planning system.

PubMed

Zhu, X R; Poenisch, F; Lii, M; Sawakuchi, G O; Titt, U; Bues, M; Song, X; Zhang, X; Li, Y; Ciangaru, G; Li, H; Taylor, M B; Suzuki, K; Mohan, R; Gillin, M T; Sahoo, N

2013-04-01

To present our method and experience in commissioning dose models in water for spot scanning proton therapy in a commercial treatment planning system (TPS). The input data required by the TPS included in-air transverse profiles and integral depth doses (IDDs). All input data were obtained from Monte Carlo (MC) simulations that had been validated by measurements. MC-generated IDDs were converted to units of Gy mm(2)/MU using the measured IDDs at a depth of 2 cm employing the largest commercially available parallel-plate ionization chamber. The sensitive area of the chamber was insufficient to fully encompass the entire lateral dose deposited at depth by a pencil beam (spot). To correct for the detector size, correction factors as a function of proton energy were defined and determined using MC. The fluence of individual spots was initially modeled as a single Gaussian (SG) function and later as a double Gaussian (DG) function. The DG fluence model was introduced to account for the spot fluence due to contributions of large angle scattering from the devices within the scanning nozzle, especially from the spot profile monitor. To validate the DG fluence model, we compared calculations and measurements, including doses at the center of spread out Bragg peaks (SOBPs) as a function of nominal field size, range, and SOBP width, lateral dose profiles, and depth doses for different widths of SOBP. Dose models were validated extensively with patient treatment field-specific measurements. We demonstrated that the DG fluence model is necessary for predicting the field size dependence of dose distributions. With this model, the calculated doses at the center of SOBPs as a function of nominal field size, range, and SOBP width, lateral dose profiles and depth doses for rectangular target volumes agreed well with respective measured values. With the DG fluence model for our scanning proton beam line, we successfully treated more than 500 patients from March 2010 through June 2012 with acceptable agreement between TPS calculated and measured dose distributions. However, the current dose model still has limitations in predicting field size dependence of doses at some intermediate depths of proton beams with high energies. We have commissioned a DG fluence model for clinical use. It is demonstrated that the DG fluence model is significantly more accurate than the SG fluence model. However, some deficiencies in modeling the low-dose envelope in the current dose algorithm still exist. Further improvements to the current dose algorithm are needed. The method presented here should be useful for commissioning pencil beam dose algorithms in new versions of TPS in the future.

About uncertainties in sea ice thickness retrieval from satellite radar altimetry: results from the ESA-CCI Sea Ice ECV Project Round Robin Exercise

NASA Astrophysics Data System (ADS)

Kern, S.; Khvorostovsky, K.; Skourup, H.; Rinne, E.; Parsakhoo, Z. S.; Djepa, V.; Wadhams, P.; Sandven, S.

2014-03-01

One goal of the European Space Agency Climate Change Initiative sea ice Essential Climate Variable project is to provide a quality controlled 20 year long data set of Arctic Ocean winter-time sea ice thickness distribution. An important step to achieve this goal is to assess the accuracy of sea ice thickness retrieval based on satellite radar altimetry. For this purpose a data base is created comprising sea ice freeboard derived from satellite radar altimetry between 1993 and 2012 and collocated observations of snow and sea ice freeboard from Operation Ice Bridge (OIB) and CryoSat Validation Experiment (CryoVEx) air-borne campaigns, of sea ice draft from moored and submarine Upward Looking Sonar (ULS), and of snow depth from OIB campaigns, Advanced Microwave Scanning Radiometer aboard EOS (AMSR-E) and the Warren Climatology (Warren et al., 1999). An inter-comparison of the snow depth data sets stresses the limited usefulness of Warren climatology snow depth for freeboard-to-thickness conversion under current Arctic Ocean conditions reported in other studies. This is confirmed by a comparison of snow freeboard measured during OIB and CryoVEx and snow freeboard computed from radar altimetry. For first-year ice the agreement between OIB and AMSR-E snow depth within 0.02 m suggests AMSR-E snow depth as an appropriate alternative. Different freeboard-to-thickness and freeboard-to-draft conversion approaches are realized. The mean observed ULS sea ice draft agrees with the mean sea ice draft computed from radar altimetry within the uncertainty bounds of the data sets involved. However, none of the realized approaches is able to reproduce the seasonal cycle in sea ice draft observed by moored ULS satisfactorily. A sensitivity analysis of the freeboard-to-thickness conversion suggests: in order to obtain sea ice thickness as accurate as 0.5 m from radar altimetry, besides a freeboard estimate with centimetre accuracy, an ice-type dependent sea ice density is as mandatory as a snow depth with centimetre accuracy.

SU-E-T-439: An Improved Formula of Scatter-To-Primary Ratio for Photon Dose Calculation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, T

2014-06-01

Purpose: Scatter-to-primary ratio (SPR) is an important dosimetric quantity that describes the contribution from the scatter photons in an external photon beam. The purpose of this study is to develop an improved analytical formula to describe SPR as a function of circular field size (r) and depth (d) using Monte Carlo (MC) simulation. Methods: MC simulation was performed for Mohan photon spectra (Co-60, 4, 6, 10, 15, 23 MV) using EGSNRC code. Point-spread scatter dose kernels in water are generated. The scatter-to-primary ratio (SPR) is also calculated using MC simulation as a function of field size for circular field sizemore » with radius r and depth d. The doses from forward scatter and backscatter photons are calculated using a convolution of the point-spread scatter dose kernel and by accounting for scatter photons contributing to dose before (z'd) reaching the depth of interest, d, where z' is the location of scatter photons, respectively. The depth dependence of the ratio of the forward scatter and backscatter doses is determined as a function of depth and field size. Results: We are able to improve the existing 3-parameter (a, w, d0) empirical formula for SPR by introducing depth dependence for one of the parameter d0, which becomes 0 for deeper depths. The depth dependence of d0 can be directly calculated as a ratio of backscatter-to-forward scatter doses for otherwise the same field and depth. With the improved empirical formula, we can fit SPR for all megavoltage photon beams to within 2%. Existing 3-parameter formula cannot fit SPR data for Co-60 to better than 3.1%. Conclusion: An improved empirical formula is developed to fit SPR for all megavoltage photon energies to within 2%.« less

Bio-inspired design of a magnetically active trilayered scaffold for cartilage tissue engineering.

PubMed

Brady, Mariea A; Talvard, Lucien; Vella, Alain; Ethier, C Ross

2017-04-01

An important topic in cartilage tissue engineering is the development of biomimetic scaffolds which mimic the depth-dependent material properties of the native tissue. We describe an advanced trilayered nanocomposite hydrogel (ferrogel) with a gradient in compressive modulus from the top to the bottom layers (p < 0.05) of the construct. Further, the scaffold was able to respond to remote external stimulation, exhibiting an elastic, depth-dependent strain gradient. When bovine chondrocytes were seeded into the ferrogels and cultured for up to 14 days, there was good cell viability and a biochemical gradient was measured with sulphated glycosaminoglycan increasing with depth from the surface. This novel construct provides tremendous scope for tailoring location-specific cartilage replacement tissue; by varying the density of magnetic nanoparticles, concentration of base hydrogel and number of cells, physiologically relevant depth-dependent gradients may be attained. © 2015 The Authors Journal of Tissue Engineering and Regenerative Medicine Published by John Wiley & Sons Ltd. © 2015 The Authors Journal of Tissue Engineering and Regenerative Medicine Published by John Wiley & Sons Ltd.

London penetration depth measurements in Ba (Fe 1-xT x) 2As 2(T=Co,Ni,Ru,Rh,Pd,Pt,Co+Cu) superconductors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gordon, Ryan T.

2011-01-01

The London penetration depth has been measured in various doping levels of single crystals of Ba(Fe 1-xT x) 2As 2 (T=Co,Ni,Ru,Rh,Pd,Pt,Co+Cu) superconductors by utilizing a tunnel diode resonator (TDR) apparatus. All in-plane penetration depth measurements exhibit a power law temperature dependence of the form Δλ ab(T) = CT n, indicating the existence of low-temperature, normal state quasiparticles all the way down to the lowest measured temperature, which was typically 500 mK. Several different doping concentrations from the Ba(Fe 1-xT x) 2As 2 (T=Co,Ni) systems have been measured and the doping dependence of the power law exponent, n, is compared tomore » results from measurements of thermal conductivity and specific heat. In addition, a novel method has been developed to allow for the measurement of the zero temperature value of the in-plane penetration depth, λ ab(0), by using TDR frequency shifts. By using this technique, the doping dependence of λ ab(0) has been measured in the Ba(Fe 1-xCo x) 2As 2 series, which has allowed also for the construction of the doping-dependent superfluid phase stiffness, ρ s(T) = [λ(0)/λ(T)] 2. By studying the effects of disorder on these superconductors using heavy ion irradiation, it has been determined that the observed power law temperature dependence likely arises from pair-breaking impurity scattering contributions, which is consistent with the proposed s±-wave symmetry of the superconducting gap in the dirty scattering limit. This hypothesis is supported by the measurement of an exponential temperature dependence of the penetration depth in the intrinsically clean LiFeAs, indicative of a nodeless superconducting gap.« less

Computer assisted video analysis of swimming performance in a forced swim test: simultaneous assessment of duration of immobility and swimming style in mice selected for high and low swim-stress induced analgesia.

PubMed

Juszczak, Grzegorz R; Lisowski, Paweł; Sliwa, Adam T; Swiergiel, Artur H

2008-10-20

In behavioral pharmacology, two problems are encountered when quantifying animal behavior: 1) reproducibility of the results across laboratories, especially in the case of manual scoring of animal behavior; 2) presence of different behavioral idiosyncrasies, common in genetically different animals, that mask or mimic the effects of the experimental treatments. This study aimed to develop an automated method enabling simultaneous assessment of the duration of immobility in mice and the depth of body submersion during swimming by means of computer assisted video analysis system (EthoVision from Noldus). We tested and compared parameters of immobility based either on the speed of an object (animal) movement or based on the percentage change in the object's area between the consecutive video frames. We also examined the effects of an erosion-dilation filtering procedure on the results obtained with both parameters of immobility. Finally, we proposed an automated method enabling assessment of depth of body submersion that reflects swimming performance. It was found that both parameters of immobility were sensitive to the effect of an antidepressant, desipramine, and that they yielded similar results when applied to mice that are good swimmers. The speed parameter was, however, more sensitive and more reliable because it depended less on random noise of the video image. Also, it was established that applying the erosion-dilation filtering procedure increased the reliability of both parameters of immobility. In case of mice that were poor swimmers, the assessed duration of immobility differed depending on a chosen parameter, thus resulting in the presence or lack of differences between two lines of mice that differed in swimming performance. These results substantiate the need for assessing swimming performance when the duration of immobility in the FST is compared in lines that differ in their swimming "styles". Testing swimming performance can also be important in the studies investigating the effects of swim stress on other behavioral or physiological parameters because poor swimming abilities displayed by some lines can increase severity of swim stress, masking the between-line differences or the main treatment effects.

Eddy current spectroscopy for near-surface residual stress profiling in surface treated nonmagnetic engine alloys

NASA Astrophysics Data System (ADS)

Abu-Nabah, Bassam A.

Recent research results indicated that eddy current conductivity measurements can be exploited for nondestructive evaluation of near-surface residual stresses in surface-treated nickel-base superalloy components. Most of the previous experimental studies were conducted on highly peened (Almen 10-16A) specimens that exhibit harmful cold work in excess of 30% plastic strain. Such high level of cold work causes thermo-mechanical relaxation at relatively modest operational temperatures; therefore the obtained results were not directly relevant to engine manufacturers and end users. The main reason for choosing peening intensities in excess of recommended normal levels was that in low-conductivity engine alloys the eddy current penetration depth could not be forced below 0.2 mm without expanding the measurements above 10 MHz which is beyond the operational range of most commercial eddy current instruments. As for shot-peened components, it was initially felt that the residual stress effect was more difficult to separate from cold work, texture, and inhomogeneity effects in titanium alloys than in nickel-base superalloys. In addition, titanium alloys have almost 50% lower electric conductivity than nickel-base superalloys; therefore require proportionally higher inspection frequencies, which was not feasible until our recent breakthrough in instrument development. Our work has been focused on six main aspects of this continuing research, namely, (i) the development of an iterative inversion technique to better retrieve the depth-dependent conductivity profile from the measured frequency-dependent apparent eddy current conductivity (AECC), (ii) the extension of the frequency range up to 80 MHz to better capture the peak compressive residual stress in nickel-base superalloys using a new eddy current conductivity measuring system, which offers better reproducibility, accuracy and measurement speed than the previously used conventional systems, (iii) the lift-off effect on high frequency eddy current spectroscopy, (iv) the development of custom-made spiral coils to allow eddy current conductivity characterization over the whole frequency range of interest with reduced coil sensitivity to lift off, (v) the benefits of implementing a semi-quadratic system calibration in reducing the coil sensitivity to lift-off, and (vi) the feasibility of adapting high-frequency eddy current residual stress characterization for shot-peened titanium alloys.

High-sensitivity explosives detection using dual-excitation-wavelength resonance-Raman detector

NASA Astrophysics Data System (ADS)

Yellampalle, Balakishore; McCormick, William B.; Wu, Hai-Shan; Sluch, Mikhail; Martin, Robert; Ice, Robert V.; Lemoff, Brian

2014-05-01

A key challenge for standoff explosive sensors is to distinguish explosives, with high confidence, from a myriad of unknown background materials that may have interfering spectral peaks. To meet this challenge a sensor needs to exhibit high specificity and high sensitivity in detection at low signal-to-noise ratio levels. We had proposed a Dual-Excitation- Wavelength Resonance-Raman Detector (DEWRRED) to address this need. In our previous work, we discussed various components designed at WVHTCF for a DEWRRED sensor. In this work, we show a completely assembled laboratory prototype of a DEWRRED sensor and utilize it to detect explosives from two standoff distances. The sensor system includes two novel, compact CW deep-Ultraviolet (DUV) lasers, a compact dual-band high throughput DUV spectrometer, and a highly-sensitive detection algorithm. We choose DUV excitation because Raman intensities from explosive traces are enhanced and fluorescence and solar background are not present. The DEWRRED technique exploits the excitation wavelength dependence of Raman signal strength, arising from complex interplay of resonant enhancement, self-absorption and laser penetration depth. We show measurements from >10 explosives/pre-cursor materials at different standoff distances. The sensor showed high sensitivity in explosive detection even when the signalto- noise ratio was close to one (~1.6). We measured receiver-operating-characteristics, which show a clear benefit in using the dual-excitation-wavelength technique as compared to a single-excitation-wavelength technique. Our measurements also show improved specificity using the amplitude variation information in the dual-excitation spectra.

Legacy effects of grassland management on soil carbon to depth.

PubMed

Ward, Susan E; Smart, Simon M; Quirk, Helen; Tallowin, Jerry R B; Mortimer, Simon R; Shiel, Robert S; Wilby, Andrew; Bardgett, Richard D

2016-08-01

The importance of managing land to optimize carbon sequestration for climate change mitigation is widely recognized, with grasslands being identified as having the potential to sequester additional carbon. However, most soil carbon inventories only consider surface soils, and most large-scale surveys group ecosystems into broad habitats without considering management intensity. Consequently, little is known about the quantity of deep soil carbon and its sensitivity to management. From a nationwide survey of grassland soils to 1 m depth, we show that carbon in grassland soils is vulnerable to management and that these management effects can be detected to considerable depth down the soil profile, albeit at decreasing significance with depth. Carbon concentrations in soil decreased as management intensity increased, but greatest soil carbon stocks (accounting for bulk density differences), were at intermediate levels of management. Our study also highlights the considerable amounts of carbon in subsurface soil below 30 cm, which is missed by standard carbon inventories. We estimate grassland soil carbon in Great Britain to be 2097 Tg C to a depth of 1 m, with ~60% of this carbon being below 30 cm. Total stocks of soil carbon (t ha(-1) ) to 1 m depth were 10.7% greater at intermediate relative to intensive management, which equates to 10.1 t ha(-1) in surface soils (0-30 cm), and 13.7 t ha(-1) in soils from 30 to 100 cm depth. Our findings highlight the existence of substantial carbon stocks at depth in grassland soils that are sensitive to management. This is of high relevance globally, given the extent of land cover and large stocks of carbon held in temperate managed grasslands. Our findings have implications for the future management of grasslands for carbon storage and climate mitigation, and for global carbon models which do not currently account for changes in soil carbon to depth with management. © 2016 John Wiley & Sons Ltd.

Point-spread Function Ramifications and Deconvolution of a Signal Dependent Blur Kernel Due to Interpixel Capacitive Coupling

NASA Astrophysics Data System (ADS)

Donlon, Kevan; Ninkov, Zoran; Baum, Stefi

2018-07-01

Interpixel capacitance (IPC) is a deterministic electronic coupling that results in a portion of the collected signal incident on one pixel of a hybridized detector array being measured in adjacent pixels. Data collected by light sensitive HgCdTe arrays which exhibit this coupling typically goes uncorrected or is corrected by treating the coupling as a fixed point-spread function. Evidence suggests that this IPC coupling is not uniform across different signal and background levels. This variation invalidates assumptions that are key in decoupling techniques such as Wiener Filtering or application of the Lucy–Richardson algorithm. Additionally, the variable IPC results in the point-spread function (PSF) depending upon a star’s signal level relative to the background level, among other parameters. With an IPC ranging from 0.68% to 1.45% over the full well depth of a sensor, as is a reasonable range for the H2RG arrays, the FWHM of the JWSTs NIRCam 405N band is degraded from 2.080 pix (0.″132) as expected from the diffraction pattern to 2.186 pix (0.″142) when the star is just breaching the sensitivity limit of the system. For example, When attempting to use a fixed PSF fitting (e.g., assuming the PSF observed from a bright star in the field) to untangle two sources with a flux ratio of 4:1 and a center to center distance of 3 pixels, flux estimation can be off by upwards of 1.5% with a separation error of 50 millipixels. To deal with this issue an iterative non-stationary method for deconvolution is here proposed, implemented, and evaluated that can account for the signal dependent nature of IPC.

The parsec-scale relationship between ICO and AV in local molecular clouds

NASA Astrophysics Data System (ADS)

Lee, Cheoljong; Leroy, Adam K.; Bolatto, Alberto D.; Glover, Simon C. O.; Indebetouw, Remy; Sandstrom, Karin; Schruba, Andreas

2018-03-01

We measure the parsec-scale relationship between integrated CO intensity (ICO) and visual extinction (AV) in 24 local molecular clouds using maps of CO emission and dust optical depth from Planck. This relationship informs our understanding of CO emission across environments, but clean Milky Way measurements remain scarce. We find uniform ICO for a given AV, with the results bracketed by previous studies of the Pipe and Perseus clouds. Our measured ICO-AV relation broadly agrees with the standard Galactic CO-to-H2 conversion factor, the relation found for the Magellanic clouds at coarser resolution, and numerical simulations by Glover & Clark (2016). This supports the idea that CO emission primarily depends on shielding, which protects molecules from dissociating radiation. Evidence for CO saturation at high AV and a threshold for CO emission at low AV varies remains uncertain due to insufficient resolution and ambiguities in background subtraction. Resolution of order 0.1 pc may be required to measure these features. We use this ICO-AV relation to predict how the CO-to-H2 conversion factor (XCO) would change if the Solar Neighbourhood clouds had different dust-to-gas ratio (metallicity). The calculations highlight the need for improved observations of the CO emission threshold and H I shielding layer depth. They are also sensitive to the shape of the column density distribution. Because local clouds collectively show a self-similar distribution, we predict a shallow metallicity dependence for XCO down to a few tenths of solar metallicity. However, our calculations also imply dramatic variations in cloud-to-cloud XCO at subsolar metallicity.

Understanding the formation and evolution of rain-formed fresh lenses at the ocean surface

NASA Astrophysics Data System (ADS)

Drushka, Kyla; Asher, William E.; Ward, Brian; Walesby, Kieran

2016-04-01

Rain falling on the ocean produces a layer of buoyant fresher surface water, or "fresh lens." Fresh lenses can have significant impacts on satellite-in situ salinity comparisons and on exchanges between the surface and the bulk mixed layer. However, because these are small, transient features, relatively few observations of fresh lenses have been made. Here the Generalized Ocean Turbulence Model (GOTM) is used to explore the response of the upper few meters of the ocean to rain events. Comparisons with observations from several platforms demonstrate that GOTM can reproduce the main characteristics of rain-formed fresh lenses. Idealized sensitivity tests show that the near-surface vertical salinity gradient within fresh lenses has a linear dependence on rain rate and an inverse dependence on wind speed. Yearlong simulations forced with satellite rainfall and reanalysis atmospheric parameters demonstrate that the mean salinity difference between 0.01 and 5 m, equivalent to the measurement depths of satellite radiometers and Argo floats, is -0.04 psu when averaged over the 20°S-20°N tropical band. However, when averaged regionally, the mean vertical salinity difference exceeds -0.15 psu in the Indo-Pacific warm pool, in the Pacific and Atlantic intertropical convergence zone, and in the South Pacific convergence zone. In most of these regions, salinities measured by the Aquarius satellite instrument have a fresh bias relative to Argo measurements at 5 m depth. These results demonstrate that the fresh bias in Aquarius salinities in rainy, low-wind regions may be caused by the presence of rain-produced fresh lenses.

Time-Distance Analysis of Deep Solar Convection

NASA Technical Reports Server (NTRS)

Duvall, T. L., Jr.; Hanasoge, S. M.

2011-01-01

Recently it was shown by Hanasoge, Duvall, and DeRosa (2010) that the upper limit to convective flows for spherical harmonic degrees l

The detection of He in tungsten following ion implantation by laser-induced breakdown spectroscopy

DOE PAGES

Shaw, Guinevere C.; Bannister, Mark E.; Biewer, Theodore M.; ...

2017-09-08

Laser-induced breakdown spectroscopy (LIBS) results are presented that provide depth-resolved identification of He implanted in polycrystalline tungsten (PC-W) targets by a 200 keV He+ ion beam, with a surface temperature of approximately 900 °C and a peak fluence of 10 23 m –2. He retention, and the influence of He on deuterium and tritium recycling, permeation, and retention in PC-W plasma facing components are important questions for the divertor and plasma facing components in a fusion reactor, yet are difficult to quantify. The purpose of this work is to demonstrate the ability of LIBS to identify helium in tungsten; tomore » investigate the sensitivity of laser parameters including, laser energy and gate delay, that directly influence the sensitivity and depth resolution of LIBS; and to perform a proof-of-principle experiment using LIBS to measure relative He intensities as a function of depth. In conclusion, the results presented demonstrate the potential not only to identify helium but also to develop a methodology to quantify gaseous impurity concentration in PC-W as a function of depth.« less

Calcium specificity signaling mechanisms in abscisic acid signal transduction in Arabidopsis guard cells

PubMed Central

Brandt, Benjamin; Munemasa, Shintaro; Wang, Cun; Nguyen, Desiree; Yong, Taiming; Yang, Paul G; Poretsky, Elly; Belknap, Thomas F; Waadt, Rainer; Alemán, Fernando; Schroeder, Julian I

2015-01-01

A central question is how specificity in cellular responses to the eukaryotic second messenger Ca2+ is achieved. Plant guard cells, that form stomatal pores for gas exchange, provide a powerful system for in depth investigation of Ca2+-signaling specificity in plants. In intact guard cells, abscisic acid (ABA) enhances (primes) the Ca2+-sensitivity of downstream signaling events that result in activation of S-type anion channels during stomatal closure, providing a specificity mechanism in Ca2+-signaling. However, the underlying genetic and biochemical mechanisms remain unknown. Here we show impairment of ABA signal transduction in stomata of calcium-dependent protein kinase quadruple mutant plants. Interestingly, protein phosphatase 2Cs prevent non-specific Ca2+-signaling. Moreover, we demonstrate an unexpected interdependence of the Ca2+-dependent and Ca2+-independent ABA-signaling branches and the in planta requirement of simultaneous phosphorylation at two key phosphorylation sites in SLAC1. We identify novel mechanisms ensuring specificity and robustness within stomatal Ca2+-signaling on a cellular, genetic, and biochemical level. DOI: http://dx.doi.org/10.7554/eLife.03599.001 PMID:26192964

Correction: Calcium specificity signaling mechanisms in abscisic acid signal transduction in Arabidopsis guard cells

DOE PAGES

Brandt, Benjamin; Munemasa, Shintaro; Wang, Cun; ...

2015-07-20

One central question is how specificity in cellular responses to the eukaryotic second messenger Ca 2+ is achieved. Plant guard cells, that form stomatal pores for gas exchange, provide a powerful system for in depth investigation of Ca 2+-signaling specificity in plants. In intact guard cells, abscisic acid (ABA) enhances (primes) the Ca 2+-sensitivity of downstream signaling events that result in activation of S-type anion channels during stomatal closure, providing a specificity mechanism in Ca 2+-signaling. However, the underlying genetic and biochemical mechanisms remain unknown. Here we show impairment of ABA signal transduction in stomata of calcium-dependent protein kinase quadruplemore » mutant plants. Interestingly, protein phosphatase 2Cs prevent non-specific Ca 2+-signaling. Moreover, we demonstrate an unexpected interdependence of the Ca 2+-dependent and Ca 2+-independent ABA-signaling branches and the in planta requirement of simultaneous phosphorylation at two key phosphorylation sites in SLAC1. We identify novel mechanisms ensuring specificity and robustness within stomatal Ca 2+-signaling on a cellular, genetic, and biochemical level.« less

Segmentation decreases the magnitude of the tilt illusion

PubMed Central

Qiu, Cheng; Kersten, Daniel; Olman, Cheryl A.

2013-01-01

In the tilt illusion, the perceived orientation of a target grating depends strongly on the orientation of a surround. When the orientations of the center and surround gratings differ by a small angle, the center grating appears to tilt away from the surround orientation (repulsion), whereas for a large difference in angle, the center appears to tilt toward the surround orientation (attraction). In order to understand how segmentation/perceptual grouping of the center and surround affect the magnitude of the tilt illusion, we conducted three psychophysical experiments in which we measured observers' perception of center orientation as a function of center-surround relative contrast, relative disparity depth, and geometric features such as occlusion and collinearity. All of these manipulations affected the strength of perceived orientation bias in the center. Our results suggest that if stronger segmentation/perceptual grouping is induced between the center and surround, the tilt repulsion bias decreases/increases. A grouping-dependent tilt illusion plays an important role in visual search and detection by enhancing the sensitivity of our visual system to feature discrepancies, especially in relatively homogenous environments. PMID:24259671

Correction: Calcium specificity signaling mechanisms in abscisic acid signal transduction in Arabidopsis guard cells

DOE PAGES

Brandt, Benjamin; Munemasa, Shintaro; Wang, Cun; ...

2015-07-29

A central question is how specificity in cellular responses to the eukaryotic second messenger Ca 2+ is achieved. Plant guard cells, that form stomatal pores for gas exchange, provide a powerful system for in depth investigation of Ca 2+-signaling specificity in plants. In intact guard cells, abscisic acid (ABA) enhances (primes) the Ca 2+-sensitivity of downstream signaling events that result in activation of S-type anion channels during stomatal closure, providing a specificity mechanism in Ca 2+-signaling. However, the underlying genetic and biochemical mechanisms remain unknown. Here we show impairment of ABA signal transduction in stomata of calcium-dependent protein kinase quadruplemore » mutant plants. Interestingly, protein phosphatase 2Cs prevent non-specific Ca 2+-signaling. Moreover, we demonstrate an unexpected interdependence of the Ca 2+-dependent and Ca 2+-independent ABA-signaling branches and the in planta requirement of simultaneous phosphorylation at two key phosphorylation sites in SLAC1. We identify novel mechanisms ensuring specificity and robustness within stomatal Ca 2+-signaling on a cellular, genetic, and biochemical level.« less

Maintenance and testing of anodized aluminum mirrors on the Whipple 10 m Whipple Telescope

NASA Astrophysics Data System (ADS)

Badran, H. M.; Weekes, T. C.

2001-08-01

Threshold energy sensitivity depends not only on the high reflectivity of the mirrors used in atmospheric Cherenkov telescopes but also on the maintenance of this reflectivity over months/years. The successful application of a mirror maintenance technique depends on the type of mirror coating and the contamination that must be removed. The uncovered mirrors in use on the 10-m Whipple gamma-ray telescope are anodized aluminum mirrors. A standard cleaning technique for such mirrors is not available. With the aim of extending the life of the aluminum coating exposed to the Mt ˙Hopkins environment, several cleaning procedures were tested on mirrors that had been exposed for three years. Evaluation of the most effective cleaners is presented. Preliminary results are also presented from a long-term experiment using newly coated mirrors at the proposed VERITAS site and at the current 10 m site. This experiment is designed to reveal the rates at which the reflectance degrades as a function of time, depth of anodization, storage direction, degree of covering, and maintenance procedures.

μSR and NMR study of the superconducting Heusler compound YPd2Sn

NASA Astrophysics Data System (ADS)

Saadaoui, H.; Shiroka, T.; Amato, A.; Baines, C.; Luetkens, H.; Pomjakushina, E.; Pomjakushin, V.; Mesot, J.; Pikulski, M.; Morenzoni, E.

2013-09-01

We report on muon-spin rotation and relaxation (μSR) and 119Sn nuclear magnetic resonance (NMR) measurements to study the microscopic superconducting and magnetic properties of the Heusler compound with the highest superconducting transition temperature, YPd2Sn (Tc=5.4 K). Measurements in the vortex state provide the temperature dependence of the effective magnetic penetration depth λ(T) and the field dependence of the superconducting gap Δ(0). The results are consistent with a very dirty s-wave BCS superconductor with a gap Δ(0)=0.85(3) meV, λ(0)=212(1) nm, and a Ginzburg-Landau coherence length ξGL(0)≅23 nm. In spite of its very dirty character, the effective density of condensed charge carriers is high compared to that in the normal state. The μSR data in a broad range of applied fields are well reproduced by taking into account a field-related reduction of the effective superconducting gap. Zero-field μSR measurements, sensitive to the possible presence of very small magnetic moments, do not show any indications of magnetism in this compound.

Total rate imaging with x-rays (TRIX)--a simple method of forming a non-projection x-ray image in the SEM using an energy dispersive detector and its application to biological specimens.

PubMed

Ingram, P; Shelburne, J D

1980-01-01

X-ray images can be formed in a conventional scanning electron microscope equipped with a Si(Li) energy dispersive spectrometer. All the x-ray events generated in the electron beam scanning process are synchronously displayed in the same manner as for dot maps. The quasi-digital image formed using Total Rate Imaging with X-rays (TRIX) exhibits good gray scale contrast and is dependent on topography, orientation and atomic number. Although this latter dependence is complex, it has been found useful in locating several types of inclusions in lung tissue (silicosis), human alveolar macrophages and cigarette smoke condensate. This is because of the greater depth of penetration of x-rays than backscattered electrons (BSE) usually used for such localizations in a matrix, and the negligible sensitivity of the Si(Li) detector to x-rays from an organic biological matrix. The optimum procedure is to use a combination of TRIX and BSE to investigate such specimens.

Modelling responses of the inert-gas washout and MRI to bronchoconstriction.

PubMed

Foy, Brody H; Kay, David; Bordas, Rafel

2017-01-01

Many lung diseases lead to an increase in ventilation heterogeneity (VH). Two clinical practices for the measurement of patient VH are in vivo imaging, and the inert gas multiple breath washout (MBW). In this study computational modelling was used to compare the responses of MBW indices LCI and s cond and MRI measured global and local ventilation indices, σ r and σ local , to constriction of airways in the conducting zone of the lungs. The simulations show that s cond , LCI and σ r behave quite similarly to each other, all being sensitive to increases in the severity of constriction, while exhibiting little sensitivity to the depth at which constriction occurs. In contrast, the local MRI index σ local shows strong sensitivity to depth of constriction, but lowered sensitivity to constriction severity. We finish with an analysis of the sensitivity of MRI indices to grid sizes, showing that results should be interpreted with reference to the image resolution. Overall we conclude that the application of both local and global VH measures may help to classify different types of bronchoconstriction. Copyright © 2016 Elsevier B.V. All rights reserved.

Combining Gabor and Talbot bands techniques to enhance the sensitivity with depth in Fourier domain optical coherence tomography

NASA Astrophysics Data System (ADS)

Bradu, Adrian; Marques, Manuel J.; Bouchal, Petr; Podoleanu, Adrian Gh.

2013-03-01

The purpose of this study was to show how to favorably mix two e_ects to improve the sensitivity with depth in Fourier domain optical coherence tomography (OCT): Talbot bands (TB) and Gabor-based fusion (GF) technique. TB operation is achieved by directing the two beams, from the object arm and from the reference arm in the OCT interferometer, along parallel separate paths towards the spectrometer. By changing the lateral gap between the two beams in their path towards the spectrometer, the position for the maximum sensitivity versus the optical path difference in the interferometer is adjusted. For five values of the focus position, the gap between the two beams is readjusted to reach maximum sensitivity. Then, similar to the procedure employed in the GF technique, a composite image is formed by edging together the parts of the five images that exhibited maximum brightness. The combined procedure, TB/GF is examined for four different values of the beam diameters of the two beams. Also we demonstrate volumetric FD-OCT images with mirror term attenuation and sensitivity profile shifted towards higher OPD values by applying a Talbot bands configuration.

Expanding the UniFrac Toolbox

PubMed Central

2016-01-01

The UniFrac distance metric is often used to separate groups in microbiome analysis, but requires a constant sequencing depth to work properly. Here we demonstrate that unweighted UniFrac is highly sensitive to rarefaction instance and to sequencing depth in uniform data sets with no clear structure or separation between groups. We show that this arises because of subcompositional effects. We introduce information UniFrac and ratio UniFrac, two new weightings that are not as sensitive to rarefaction and allow greater separation of outliers than classic unweighted and weighted UniFrac. With this expansion of the UniFrac toolbox, we hope to empower researchers to extract more varied information from their data. PMID:27632205

Performance comparison between 8 and 14 bit-depth imaging in polarization-sensitive swept-source optical coherence tomography

NASA Astrophysics Data System (ADS)

Lu, Zenghai; Kasaragoda, Deepa K.; Matcher, Stephen J.

2011-03-01

We compare true 8 and 14 bit-depth imaging of SS-OCT and polarization-sensitive SS-OCT (PS-SS-OCT) at 1.3μm wavelength by using two hardware-synchronized high-speed data acquisition (DAQ) boards. The two DAQ boards read exactly the same imaging data for comparison. The measured system sensitivity at 8-bit depth is comparable to that for 14-bit acquisition when using the more sensitive of the available full analog input voltage ranges of the ADC. Ex-vivo structural and birefringence images of an equine tendon sample indicate no significant differences between images acquired by the two DAQ boards suggesting that 8-bit DAQ boards can be employed to increase imaging speeds and reduce storage in clinical SS-OCT/PS-SS-OCT systems. We also compare the resulting image quality when the image data sampled with the 14-bit DAQ from human finger skin is artificially bit-reduced during post-processing. However, in agreement with the results reported previously, we also observe that in our system that real-world 8-bit image shows more artifacts than the image acquired by numerically truncating to 8-bits from the raw 14-bit image data, especially in low intensity image area. This is due to the higher noise floor and reduced dynamic range of the 8-bit DAQ. One possible disadvantage is a reduced imaging dynamic range which can manifest itself as an increase in image artefacts due to strong Fresnel reflection.

Context-dependent catalepsy intensification is due to classical conditioning and sensitization.

PubMed

Amtage, J; Schmidt, W J

2003-11-01

Haloperidol-induced catalepsy represents a model of neuroleptic-induced Parkinsonism. Daily administration of haloperidol, followed by testing for catalepsy on a bar and grid, results in a day-to-day increase in catalepsy that is completely context dependent, resulting in a strong placebo effect and in a failure of expression after a change in context. The aim of this study was to analyse the associative learning process that underlies context dependency. Catalepsy intensification was induced by a daily threshold dose of 0.25 mg/kg haloperidol. Extinction training and retesting under haloperidol revealed that sensitization was composed of two components: a context-conditioning component, which can be extinguished, and a context-dependent sensitization component, which cannot be extinguished. Context dependency of catalepsy thus follows precisely the same rules as context dependency of psychostimulant-induced sensitization. Catalepsy sensitization is therefore due to conditioning and sensitization.

Depth-dependent variations of sedimentary dissolved organic matter composition in a eutrophic lake: Implications for lake restoration.

PubMed

Xu, Huacheng; Guo, Laodong; Jiang, Helong

2016-02-01

Dissolved organic matter (DOM) plays a significant role in regulating nutrients and carbon cycling and the reactivity of trace metals and other contaminants in the environment. However, the environmental/ecological role of sedimentary DOM is highly dependent on organic composition. In this study, fluorescence excitation emission matrix-parallel factor (EEM-PARAFAC) analysis, two dimensional correlation spectroscopy (2D-COS), and ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) were applied to investigate the depth-dependent variations of sediment-leached DOM components in a eutrophic lake. Results of EEM-PARAFAC and 2D-COS showed that fluorescent humic-like component was preferentially degraded microbially over fulvic-like component at greater sediment depths, and the relative abundance of non-fluorescent components decreased with increasing depth, leaving the removal rate of carbohydrates > lignins. The predominant sedimentary DOM components derived from FT-ICR-MS were lipids (>50%), followed by lignins (∼15%) and proteins (∼15%). The relative abundance of carbohydrates, lignins, and condensed aromatics decreased significantly at greater depths, whereas that of lipids increased in general with depth. There existed a significant negative correlation between the short-range ordered (SRO) minerals and the total dissolved organic carbon concentration or the relative contents of lignins and condensed aromatics (p < 0.05), suggesting that SRO mineral sorption plays a significant role in controlling the composition heterogeneity and releasing of DOM in lake sediments. Higher metal binding potential observed for DOM at deeper sediment depth (e.g., 25-30 cm) supported the ecological safety of sediment dredging technique from the viewpoint of heavy metal de-toxicity. Copyright © 2015 Elsevier Ltd. All rights reserved.

Multiscale Investigation of the Depth-Dependent Mechanical Anisotropy of the Human Corneal Stroma

PubMed Central

Labate, Cristina; Lombardo, Marco; De Santo, Maria P.; Dias, Janice; Ziebarth, Noel M.; Lombardo, Giuseppe

2015-01-01

Purpose. To investigate the depth-dependent mechanical anisotropy of the human corneal stroma at the tissue (stroma) and molecular (collagen) level by using atomic force microscopy (AFM). Methods. Eleven human donor corneas were dissected at different stromal depths by using a microkeratome. Mechanical measurements were performed in 15% dextran on the surface of the exposed stroma of each sample by using a custom-built AFM in force spectroscopy mode using both microspherical (38-μm diameter) and nanoconical (10-nm radius of curvature) indenters at 2-μm/s and 15-μm/s indentation rates. Young's modulus was determined by fitting force curve data using the Hertz and Hertz-Sneddon models for a spherical and a conical indenter, respectively. The depth-dependent anisotropy of stromal elasticity was correlated with images of the corneal stroma acquired by two-photon microscopy. Results. The force curves were obtained at stromal depths ranging from 59 to 218 μm. At the tissue level, Young's modulus (ES) showed a steep decrease at approximately 140-μm stromal depth (from 0.8 MPa to 0.3 MPa; P = 0.03) and then was stable in the posterior stroma. At the molecular level, Young's modulus (EC) was significantly greater than at the tissue level; EC decreased nonlinearly with increasing stromal depth from 3.9 to 2.6 MPa (P = 0.04). The variation of microstructure through the thickness correlated highly with a nonconstant profile of the mechanical properties in the stroma. Conclusions. The corneal stroma exhibits unique anisotropic elastic behavior at the tissue and molecular levels. This knowledge may benefit modeling of corneal behavior and help in the development of biomimetic materials. PMID:26098472

Anomalous scaling in an age-dependent branching model.

PubMed

Keller-Schmidt, Stephanie; Tuğrul, Murat; Eguíluz, Víctor M; Hernández-García, Emilio; Klemm, Konstantin

2015-02-01

We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age τ as τ(-α). Depending on the exponent α, the scaling of tree depth with tree size n displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition (α=1) tree depth grows as (logn)(2). This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus providing a theoretical support for age-dependent speciation and associating it to the occurrence of a critical point.

Patterns and drivers of fungal community depth stratification in Sphagnum peat.

PubMed

Lamit, Louis J; Romanowicz, Karl J; Potvin, Lynette R; Rivers, Adam R; Singh, Kanwar; Lennon, Jay T; Tringe, Susannah G; Kane, Evan S; Lilleskov, Erik A

2017-07-01

Peatlands store an immense pool of soil carbon vulnerable to microbial oxidation due to drought and intentional draining. We used amplicon sequencing and quantitative PCR to (i) examine how fungi are influenced by depth in the peat profile, water table and plant functional group at the onset of a multiyear mesocosm experiment, and (ii) test if fungi are correlated with abiotic variables of peat and pore water. We hypothesized that each factor influenced fungi, but that depth would have the strongest effect early in the experiment. We found that (i) communities were strongly depth stratified; fungi were four times more abundant in the upper (10-20 cm) than the lower (30-40 cm) depth, and dominance shifted from ericoid mycorrhizal fungi to saprotrophs and endophytes with increasing depth; (ii) the influence of plant functional group was depth dependent, with Ericaceae structuring the community in the upper peat only; (iii) water table had minor influences; and (iv) communities strongly covaried with abiotic variables, including indices of peat and pore water carbon quality. Our results highlight the importance of vertical stratification to peatland fungi, and the depth dependency of plant functional group effects, which must be considered when elucidating the role of fungi in peatland carbon dynamics. Published by Oxford University Press on behalf of FEMS 2017. This work is written by (a) US Government employee(s) and is in the public domain in the US.

Thermal-depth matching in dynamic scene based on affine projection and feature registration

NASA Astrophysics Data System (ADS)

Wang, Hongyu; Jia, Tong; Wu, Chengdong; Li, Yongqiang

2018-03-01

This paper aims to study the construction of 3D temperature distribution reconstruction system based on depth and thermal infrared information. Initially, a traditional calibration method cannot be directly used, because the depth and thermal infrared camera is not sensitive to the color calibration board. Therefore, this paper aims to design a depth and thermal infrared camera calibration board to complete the calibration of the depth and thermal infrared camera. Meanwhile a local feature descriptors in thermal and depth images is proposed. The belief propagation matching algorithm is also investigated based on the space affine transformation matching and local feature matching. The 3D temperature distribution model is built based on the matching of 3D point cloud and 2D thermal infrared information. Experimental results show that the method can accurately construct the 3D temperature distribution model, and has strong robustness.

The sensitivity of GNSS measurements in Fennoscandia to distinct three-dimensional upper-mantle structures

NASA Astrophysics Data System (ADS)

Steffen, Holger; Wu, Patrick

2015-04-01

This poster will present the results of Steffen & Wu (2014). The sensitivity of GNSS measurements in Fennoscandia to nearby viscosity variations in the upper mantle is investigated using a three-dimensional finite element model of glacial isostatic adjustment (GIA). Based on the lateral viscosity structure inferred from seismic tomography and the location of the ice margin at the last glacial maximum (LGM), the GIA earth model is subdivided into four layers, where each of them contains an amalgamation of about 20 blocks of different shapes in the central area. The sensitivity kernels of the three velocity components at 10 selected GNSS stations are then computed for all the blocks. We find that GNSS stations within the formerly glaciated area are most sensitive to mantle viscosities below and in its near proximity, i.e., within about 250 km in general. However, this can be as large as 1000 km if the stations lie near the center of uplift. The sensitivity of all stations to regions outside the ice margin during the LGM is generally negligible. In addition, it is shown that prominent structures in the second (250-450 km depth) and third layers (450-550 km depth) of the upper mantle may be readily detected by GNSS measurements, while the viscosity in the first mantle layer below the lithosphere (70-250 km depth) along the Norwegian coast, which is related to lateral lithospheric thickness variation there, can also be detected but with limited sensitivity. For future investigations on the lateral viscosity structure, preference should be on GNSS stations within the LGM ice margin. But these stations can be grouped into clusters to improve the inference of viscosity in a specific area. However, the GNSS measurements used in such inversion should be weighted according to their sensitivity. Such weighting should also be applied when they are used in combination with other GIA data (e.g., relative sea-level and gravity data) for the inference of mantle viscosity. Reference: Steffen, H. and Wu, P.: The sensitivity of GNSS measurements in Fennoscandia to distinct three-dimensional upper-mantle structures, Solid Earth, 5, 557-567, doi:10.5194/se-5-557-2014, 2014.

Climate Sensitivity of the Community Climate System Model, Version 4

DOE PAGES

Bitz, Cecilia M.; Shell, K. M.; Gent, P. R.; ...

2012-05-01

Equilibrium climate sensitivity of the Community Climate System Model Version 4 (CCSM4) is 3.20°C for 1° horizontal resolution in each component. This is about a half degree Celsius higher than in the previous version (CCSM3). The transient climate sensitivity of CCSM4 at 1° resolution is 1.72°C, which is about 0.2°C higher than in CCSM3. These higher climate sensitivities in CCSM4 cannot be explained by the change to a preindustrial baseline climate. We use the radiative kernel technique to show that from CCSM3 to CCSM4, the global mean lapse-rate feedback declines in magnitude, and the shortwave cloud feedback increases. These twomore » warming effects are partially canceled by cooling due to slight decreases in the global mean water-vapor feedback and longwave cloud feedback from CCSM3 to CCSM4. A new formulation of the mixed-layer, slab ocean model in CCSM4 attempts to reproduce the SST and sea ice climatology from an integration with a full-depth ocean, and it is integrated with a dynamic sea ice model. These new features allow an isolation of the influence of ocean dynamical changes on the climate response when comparing integrations with the slab ocean and full-depth ocean. The transient climate response of the full-depth ocean version is 0.54 of the equilibrium climate sensitivity when estimated with the new slab ocean model version for both CCSM3 and CCSM4. We argue the ratio is the same in both versions because they have about the same zonal mean pattern of change in ocean surface heat flux, which broadly resembles the zonal mean pattern of net feedback strength.« less

Quantification of tumor fluorescence during intraoperative optical cancer imaging

PubMed Central

Judy, Ryan P.; Keating, Jane J.; DeJesus, Elizabeth M.; Jiang, Jack X.; Okusanya, Olugbenga T.; Nie, Shuming; Holt, David E.; Arlauckas, Sean P.; Low, Phillip S.; Delikatny, E. James; Singhal, Sunil

2015-01-01

Intraoperative optical cancer imaging is an emerging technology in which surgeons employ fluorophores to visualize tumors, identify tumor-positive margins and lymph nodes containing metastases. This study compares instrumentation to measure tumor fluorescence. Three imaging systems (Spectropen, Glomax, Flocam) measured and quantified fluorescent signal-to-background ratios (SBR) in vitro, murine xenografts, tissue phantoms and clinically. Evaluation criteria included the detection of small changes in fluorescence, sensitivity of signal detection at increasing depths and practicality of use. In vitro, spectroscopy was superior in detecting incremental differences in fluorescence than luminescence and digital imaging (Ln[SBR] = 6.8 ± 0.6, 2.4 ± 0.3, 2.6 ± 0.1, p = 0.0001). In fluorescent tumor cells, digital imaging measured higher SBRs than luminescence (6.1 ± 0.2 vs. 4.3 ± 0.4, p = 0.001). Spectroscopy was more sensitive than luminometry and digital imaging in identifying murine tumor fluorescence (SBR = 41.7 ± 11.5, 5.1 ± 1.8, 4.1 ± 0.9, p = 0.0001), and more sensitive than digital imaging at detecting fluorescence at increasing depths (SBR = 7.0 ± 3.4 vs. 2.4 ± 0.5, p = 0.03). Lastly, digital imaging was the most practical and least time-consuming. All methods detected incremental differences in fluorescence. Spectroscopy was the most sensitive for small changes in fluorescence. Digital imaging was the most practical considering its wide field of view, background noise filtering capability, and sensitivity to increasing depth. PMID:26563091

Analysis of the moments of the sensitivity function for resistivity over a homogeneous half-space: Rules of thumb for pseudoposition, offline sensitivity and resolution

NASA Astrophysics Data System (ADS)

Butler, S. L.

2017-08-01

It is instructive to consider the sensitivity function for a homogeneous half space for resistivity since it has a simple mathematical formula and it does not require a priori knowledge of the resistivity of the ground. Past analyses of this function have allowed visualization of the regions that contribute most to apparent resistivity measurements with given array configurations. The horizontally integrated form of this equation gives the sensitivity function for an infinitesimally thick horizontal slab with a small resistivity contrast and analysis of this function has admitted estimates of the depth of investigation for a given electrode array. Recently, it has been shown that the average of the vertical coordinate over this function yields a simple formula that can be used to estimate the depth of investigation. The sensitivity function for a vertical inline slab has also been previously calculated. In this contribution, I show that the sensitivity function for a homogeneous half-space can also be integrated so as to give sensitivity functions to semi-infinite vertical slabs that are perpendicular to the array axis. These horizontal sensitivity functions can, in turn, be integrated over the spatial coordinates to give the mean horizontal positions of the sensitivity functions. The mean horizontal positions give estimates for the centres of the regions that affect apparent resistivity measurements for arbitrary array configuration and can be used as horizontal positions when plotting pseudosections even for non-collinear arrays. The mean of the horizontal coordinate that is perpendicular to a collinear array also gives a simple formula for estimating the distance over which offline resistivity anomalies will have a significant effect. The root mean square (rms) widths of the sensitivity functions are also calculated in each of the coordinate directions as an estimate of the inverse of the resolution of a given array. For depth and in the direction perpendicular to the array, the rms thickness is shown to be very similar to the mean distance. For the direction parallel to the array, the rms thickness is shown to be proportional to the array length and similar to the array length divided by 2 for many arrays. I expect that these formulas will provide useful rules of thumb for estimating the centres and extents of regions influencing apparent resistivity measurements for survey planning and for education.

Response of Benthic Foraminiferal Size to Oxygen Concentration in Antarctic Sediment Cores

NASA Astrophysics Data System (ADS)

Guo, D.; Keating-Bitonti, C.; Payne, J.

2014-12-01

Oxygen availability is important for biological reactions and the demand of oxygen is determined by the size of the organism. Few marine organisms can tolerate low oxygen conditions, but benthic foraminifera, a group of amoeboid protists that are highly sensitive to environmental factors, are known to live in these conditions. Benthic foraminifera may be able to live in oxygen stressed environments by changing the size and shape of their test. Low oxygen concentrations should favor smaller, thinner-shelled, flattened test morphologies. We hypothesize that the volume-to-surface area ratio of benthic foraminifera will decrease with decreasing dissolved oxygen concentrations. To test this hypothesis, we picked two calcareous species (Epistominella exigua and Cassulinoides porrectus) and one agglutinated species (Portatrochammina antarctica) from three sediment cores collected from Explorer's Cove, Antarctica. Starting at the sediment-water interface, each core spans approximately 5-8 cm of depth. Profiles of dissolved oxygen concentrations were measured at the time of collection. At specific depths within the cores, we measured the three dimensions of picked foraminiferal tests using NIS-Elements. We calculated the volume and surface area of the tests assuming the shape of the foraminifers was an ellipsoid. The size trends of E. exigua confirm our hypothesis that the test volume-to-surface area ratios correlate positively with dissolved oxygen concentrations (p-value < 0.001). However, the size trends of the other species refute our hypothesis: P. antarctica shows no correlation and C. porrectus shows a negative correlation (p-value < 0.001) to dissolved oxygen concentrations. Thus, our results show that the change in size in response to variations in dissolved oxygen concentrations is species dependent. Moreover, we find that calcareous species are more sensitive to oxygen fluctuations than agglutinated species.

West Antarctica as a Natural Laboratory for Single- and Mixed-Phase Cloud Microphysics

NASA Astrophysics Data System (ADS)

Wilson, A.; Scott, R. C.; Lubin, D.

2016-12-01

As part of the ARM West Antarctic Radiation Experiment (AWARE), a micropulse lidar (MPL) and a shortwave spectroradiometer were deployed to the West Antarctic Ice Sheet (WAIS) Divide Ice Camp during December 2015 and January 2016. Contrasting meteorological conditions gave rise to several distinct episodes of mixed-phase clouds, liquid water clouds, and entirely glaciated clouds. These phases were readily distinguished in the polarization signature from the MPL. The spectroradiometer measured downwelling hemispheric irradiance in the wavelength interval 0.35-2.2 microns, with 3-nanometer resolution at visible and 10-nanometer resolution at near-infrared wavelengths. Under overcast sky conditions, this measured irradiance is sensitive to total cloud optical depth for wavelengths shorter than 1.1 microns, and is sensitive at both cloud phase and effective particle size in the 1.6-micron window. For single-phase clouds, the spectral irradiance in the 1.6-micron window shows marked contrasts between liquid and ice water. For mixed phase clouds, this spectral dependence of the 1.6-micron irradiance is consistent with the prevailing phase, but in all cases the irradiance is small than that under a liquid water cloud having the same total optical depth. Radiative transfer retrievals of effective particle size from the 1.6-micron irradiance data reveal liquid water effective radii typically 2 microns smaller than found in the spring and summertime high Arctic. Most of the clouds sampled here were within 2 km of the surface, and there are comprehensive ancillary data including sondes four times daily, additional microwave radiometer data, and broadband radiometry. This AWARE data set from WAIS Divide provides a unique opportunity for testing and improving cloud microphysical parameterizations in extreme cold and pristine conditions.

Adiabatic and fast passage ultra-wideband inversion in pulsed EPR.

PubMed

Doll, Andrin; Pribitzer, Stephan; Tschaggelar, René; Jeschke, Gunnar

2013-05-01

We demonstrate that adiabatic and fast passage ultra-wideband (UWB) pulses can achieve inversion over several hundreds of MHz and thus enhance the measurement sensitivity, as shown by two selected experiments. Technically, frequency-swept pulses are generated by a 12 GS/s arbitrary waveform generator and upconverted to X-band frequencies. This pulsed UWB source is utilized as an incoherent channel in an ordinary pulsed EPR spectrometer. We discuss experimental methodologies and modeling techniques to account for the response of the resonator, which can strongly limit the excitation bandwidth of the entire non-linear excitation chain. Aided by these procedures, pulses compensated for bandwidth or variations in group delay reveal enhanced inversion efficiency. The degree of bandwidth compensation is shown to depend critically on the time available for excitation. As a result, we demonstrate optimized inversion recovery and double electron electron resonance (DEER) experiments. First, virtually complete inversion of the nitroxide spectrum with an adiabatic pulse of 128ns length is achieved. Consequently, spectral diffusion between inverted and non-inverted spins is largely suppressed and the observation bandwidth can be increased to increase measurement sensitivity. Second, DEER is performed on a terpyridine-based copper (II) complex with a nitroxide-copper distance of 2.5nm. As previously demonstrated on this complex, when pumping copper spins and observing nitroxide spins, the modulation depth is severely limited by the excitation bandwidth of the pump pulse. By using fast passage UWB pulses with a maximum length of 64ns, we achieve up to threefold enhancement of the modulation depth. Associated artifacts in distance distributions when increasing the bandwidth of the pump pulse are shown to be small. Copyright © 2013 Elsevier Inc. All rights reserved.

Correlation between polarization sensitive optical coherence tomography and SHG microscopy in articular cartilage

NASA Astrophysics Data System (ADS)

Zhou, Xin; Ju, Myeong Jin; Huang, Lin; Tang, Shuo

2017-02-01

Polarization-sensitive optical coherence tomography (PS-OCT) and second harmonic generation (SHG) microscopy are two imaging modalities with different resolutions, field-of-views (FOV), and contrasts, while they both have the capability of imaging collagen fibers in biological tissues. PS-OCT can measure the tissue birefringence which is induced by highly organized fibers while SHG can image the collagen fiber organization with high resolution. Articular cartilage, with abundant structural collagen fibers, is a suitable sample to study the correlation between PS-OCT and SHG microscopy. Qualitative conjecture has been made that the phase retardation measured by PS-OCT is affected by the relationship between the collagen fiber orientation and the illumination direction. Anatomical studies show that the multilayered architecture of articular cartilage can be divided into four zones from its natural surface to the subchondral bone: the superficial zone, the middle zone, the deep zone, and the calcified zone. The different zones have different collagen fiber orientations, which can be studied by the different slopes in the cumulative phase retardation in PS-OCT. An algorithm is developed based on the quantitative analysis of PS-OCT phase retardation images to analyze the microstructural features in swine articular cartilage tissues. This algorithm utilizes the depth-dependent slope changing of phase retardation A-lines to segment structural layers. The results show good consistency with the knowledge of cartilage morphology and correlation with the SHG images measured at selected depth locations. The correlation between PS-OCT and SHG microscopy shows that PS-OCT has the potential to analyze both the macro and micro characteristics of biological tissues with abundant collagen fibers and other materials that may cause birefringence.

Forest gradient response in Sierran landscapes: the physical template

USGS Publications Warehouse

Urban, Dean L.; Miller, Carol; Halpin, Patrick N.; Stephenson, Nathan L.

2000-01-01

Vegetation pattern on landscapes is the manifestation of physical gradients, biotic response to these gradients, and disturbances. Here we focus on the physical template as it governs the distribution of mixed-conifer forests in California's Sierra Nevada. We extended a forest simulation model to examine montane environmental gradients, emphasizing factors affecting the water balance in these summer-dry landscapes. The model simulates the soil moisture regime in terms of the interaction of water supply and demand: supply depends on precipitation and water storage, while evapotranspirational demand varies with solar radiation and temperature. The forest cover itself can affect the water balance via canopy interception and evapotranspiration. We simulated Sierran forests as slope facets, defined as gridded stands of homogeneous topographic exposure, and verified simulated gradient response against sample quadrats distributed across Sequoia National Park. We then performed a modified sensitivity analysis of abiotic factors governing the physical gradient. Importantly, the model's sensitivity to temperature, precipitation, and soil depth varies considerably over the physical template, particularly relative to elevation. The physical drivers of the water balance have characteristic spatial scales that differ by orders of magnitude. Across large spatial extents, temperature and precipitation as defined by elevation primarily govern the location of the mixed conifer zone. If the analysis is constrained to elevations within the mixed-conifer zone, local topography comes into play as it influences drainage. Soil depth varies considerably at all measured scales, and is especially dominant at fine (within-stand) scales. Physical site variables can influence soil moisture deficit either by affecting water supply or water demand; these effects have qualitatively different implications for forest response. These results have clear implications about purely inferential approaches to gradient analysis, and bear strongly on our ability to use correlative approaches in assessing the potential responses of montane forests to anthropogenic climatic change.

Pixel-Level Decorrelation and BiLinearly Interpolated Subpixel Sensitivity applied to WASP-29b

NASA Astrophysics Data System (ADS)

Challener, Ryan; Harrington, Joseph; Cubillos, Patricio; Blecic, Jasmina; Deming, Drake

2017-10-01

Measured exoplanet transit and eclipse depths can vary significantly depending on the methodology used, especially at the low S/N levels in Spitzer eclipses. BiLinearly Interpolated Subpixel Sensitivity (BLISS) models a physical, spatial effect, which is independent of any astrophysical effects. Pixel-Level Decorrelation (PLD) uses the relative variations in pixels near the target to correct for flux variations due to telescope motion. PLD is being widely applied to all Spitzer data without a thorough understanding of its behavior. It is a mathematical method derived from a Taylor expansion, and many of its parameters do not have a physical basis. PLD also relies heavily on binning the data to remove short time-scale variations, which can artifically smooth the data. We applied both methods to 4 eclipse observations of WASP-29b, a Saturn-sized planet, which was observed twice with the 3.6 µm and twice with the 4.5 µm channels of Spitzer's IRAC in 2010, 2011 and 2014 (programs 60003, 70084, and 10054, respectively). We compare the resulting eclipse depths and midpoints from each model, assess each method's ability to remove correlated noise, and discuss how to choose or combine the best data analysis methods. We also refined the orbit from eclipse timings, detecting a significant nonzero eccentricity, and we used our Bayesian Atmospheric Radiative Transfer (BART) code to retrieve the planet's atmosphere, which is consistent with a blackbody. Spitzer is operated by the Jet Propulsion Laboratory, California Institute of Technology, under a contract with NASA. This work was supported by NASA Planetary Atmospheres grant NNX12AI69G and NASA Astrophysics Data Analysis Program grant NNX13AF38G.

Synopsis of moisture monitoring by neutron probe in the unsaturated zone at Area G

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vold, E.

1997-12-31

Moisture profiles from neutron probe data provide valuable information in site characterization and to supplement ground water monitoring efforts. The neutron probe precision error (reproducibility) is found to be about 0.2 vol% under in situ field conditions where the slope in moisture content with depth is varying slowly. This error is about 2 times larger near moisture spikes (e.g., at the vapor phase notch), due to the sensitivity of the probe response to vertical position errors on the order of 0.5 inches. Calibrations were performed to correct the downhole probe response to the volumetric moisture content determined on core samples.more » Calibration is sensitive to borehole diameter and casing type, requiring 3 separate calibration relations for the boreholes surveyed here. Power law fits were used for calibration in this study to assure moisture content results greater than zero. Findings in the boreholes reported here confirm the broad features seen previously in moisture profiles at Area G, a near-surface region with large moisture variability, a very dry region at greater depths, and a moisture spike at the vapor phase notch (VPN). This feature is located near the interface between the vitrified and vitrified stratigraphic units and near the base of the mesa. This report describes the in-field calibration methods used for the neutron moisture probe measurements and summarizes preliminary results of the monitoring program in the in-situ monitoring network at Area G. Reported results include three main areas: calibration studies, profiles from each of the vertical boreholes at Area G, and time-dependent variations in a select subset of boreholes. Results are reported here for the vertical borehole network. Results from the horizontal borehole network will be described when available.« less

Is visual short-term memory depthful?

PubMed

Reeves, Adam; Lei, Quan

2014-03-01

Does visual short-term memory (VSTM) depend on depth, as it might be if information was stored in more than one depth layer? Depth is critical in natural viewing and might be expected to affect retention, but whether this is so is currently unknown. Cued partial reports of letter arrays (Sperling, 1960) were measured up to 700 ms after display termination. Adding stereoscopic depth hardly affected VSTM capacity or decay inferred from total errors. The pattern of transposition errors (letters reported from an uncued row) was almost independent of depth and cue delay. We conclude that VSTM is effectively two-dimensional. Copyright © 2014 Elsevier Ltd. All rights reserved.

Endobronchial intubation detected by insertion depth of endotracheal tube, bilateral auscultation, or observation of chest movements: randomised trial.

PubMed

Sitzwohl, Christian; Langheinrich, Angelika; Schober, Andreas; Krafft, Peter; Sessler, Daniel I; Herkner, Harald; Gonano, Christopher; Weinstabl, Christian; Kettner, Stephan C

2010-11-09

To determine which bedside method of detecting inadvertent endobronchial intubation in adults has the highest sensitivity and specificity. Prospective randomised blinded study. Department of anaesthesia in tertiary academic hospital. 160 consecutive patients (American Society of Anesthesiologists category I or II) aged 19-75 scheduled for elective gynaecological or urological surgery. Patients were randomly assigned to eight study groups. In four groups, an endotracheal tube was fibreoptically positioned 2.5-4.0 cm above the carina, whereas in the other four groups the tube was positioned in the right mainstem bronchus. The four groups differed in the bedside test used to verify the position of the endotracheal tube. To determine whether the tube was properly positioned in the trachea, in each patient first year residents and experienced anaesthetists were randomly assigned to independently perform bilateral auscultation of the chest (auscultation); observation and palpation of symmetrical chest movements (observation); estimation of the position of the tube by the insertion depth (tube depth); or a combination of all three (all three). Correct and incorrect judgments of endotracheal tube position. 160 patients underwent 320 observations by experienced and inexperienced anaesthetists. First year residents missed endobronchial intubation by auscultation in 55% of cases and performed significantly worse than experienced anaesthetists with this bedside test (odds ratio 10.0, 95% confidence interval 1.4 to 434). With a sensitivity of 88% (95% confidence interval 75% to 100%) and 100%, respectively, tube depth and the three tests combined were significantly more sensitive for detecting endobronchial intubation than auscultation (65%, 49% to 81%) or observation(43%, 25% to 60%) (P<0.001). The four tested methods had the same specificity for ruling out endobronchial intubation (that is, confirming correct tracheal intubation). The average correct tube insertion depth was 21 cm in women and 23 cm in men. By inserting the tube to these distances, however, the distal tip of the tube was less than 2.5 cm away from the carina (the recommended safety distance, to prevent inadvertent endobronchial intubation with changes in the position of the head in intubated patients) in 20% (24/118) of women and 18% (7/42) of men. Therefore optimal tube insertion depth was considered to be 20 cm in women and 22 cm in men. Less experienced clinicians should rely more on tube insertion depth than on auscultation to detect inadvertent endobronchial intubation. But even experienced physicians will benefit from inserting tubes to 20-21 cm in women and 22-23 cm in men, especially when high ambient noise precludes accurate auscultation (such as in emergency situations or helicopter transport). The highest sensitivity and specificity for ruling out endobronchial intubation, however, is achieved by combining tube depth, auscultation of the lungs, and observation of symmetrical chest movements. NCT01232166.

Front-end circuit for position sensitive silicon and vacuum tube photomultipliers with gain control and depth of interaction measurement

NASA Astrophysics Data System (ADS)

Herrero, Vicente; Colom, Ricardo; Gadea, Rafael; Lerche, Christoph W.; Cerdá, Joaquín; Sebastiá, Ángel; Benlloch, José M.

2007-06-01

Silicon Photomultipliers, though still under development for mass production, may be an alternative to traditional Vacuum Photomultipliers Tubes (VPMT). As a consequence, electronic front-ends initially designed for VPMT will need to be modified. In this simulation, an improved architecture is presented which is able to obtain impact position and depth of interaction of a gamma ray within a continuous scintillation crystal, using either kind of PM. A current sensitive preamplifier stage with individual gain adjustment interfaces the multi-anode PM outputs with a current division resistor network. The preamplifier stage allows to improve front-end processing delay and temporal resolution behavior as well as to increase impact position calculation resolution. Depth of interaction (DOI) is calculated from the width of the scintillation light distribution, which is related to the sum of voltages in resistor network input nodes. This operation is done by means of a high-speed current mode scheme.

Thermally Activated Deformation Behavior of ufg-Au: Environmental Issues During Long-Term and High-Temperature Nanoindentation Testing

NASA Astrophysics Data System (ADS)

Maier, Verena; Leitner, Alexander; Pippan, Reinhard; Kiener, Daniel

2015-12-01

For testing time-dependent material properties by nanoindentation, in particular for long-term creep or relaxation experiments, thermal drift influences on the displacement signal are of prime concern. To address this at room and elevated temperatures, we tested fused quartz at various contact depths at room temperature and ultra-fine grained (ufg) Au at various temperatures. We found that the raw data for fused quartz are strongly affected by thermal drift, but corrected by use of dynamic stiffness measurements all the datasets collapse. The situation for the ufg Au shows again that the data are only useful with drift correction, but with this applied it turns out that there is a significant change of elastic and plastic properties when exceeding 200°C, which is also reflected by an increasing strain rate sensitivity.

Soot Volume Fraction Imaging

NASA Technical Reports Server (NTRS)

Greenberg, Paul S.; Ku, Jerry C.

1994-01-01

A new technique is described for the full-field determination of soot volume fractions via laser extinction measurements. This technique differs from previously reported point-wise methods in that a two-dimensional array (i.e., image) of data is acquired simultaneously. In this fashion, the net data rate is increased, allowing the study of time-dependent phenomena and the investigation of spatial and temporal correlations. A telecentric imaging configuration is employed to provide depth-invariant magnification and to permit the specification of the collection angle for scattered light. To improve the threshold measurement sensitivity, a method is employed to suppress undesirable coherent imaging effects. A discussion of the tomographic inversion process is provided, including the results obtained from numerical simulation. Results obtained with this method from an ethylene diffusion flame are shown to be in close agreement with those previously obtained by sequential point-wise interrogation.

Appropriate sampling strategy and analytical methodology to address contamination by industry. Part 2: Geochemistry and speciation analysis

NASA Astrophysics Data System (ADS)

Shtiza, Aurela; Swennen, Rudy

2011-03-01

The degree of contamination in soils, sediments and dusts can be assessed based on knowledge of a variety of factors, such as industrialization, type of contaminants, deposition conditions, contamination-control techniques, along with the characteristics of the recipient environmental compartments, which include pathways for contamination transport, depth of infiltration, and degree of groundwater contamination. The impact of contaminants also depends on the quantity, mobility and speciation of contaminants/wastes as well as on the sensitivity of the recipient compartments. With sufficient knowledge of these factors, a number of conclusions can be drawn concerning the status of contamination in industrialized areas. This literature review aims to scrutinize some of the methods used to analyse the occurrence, speciation, mobility, bioavailability and likely the toxic effects of contaminants in the environment.

Drought-sensitive aquifer settings in southeastern Pennsylvania

USGS Publications Warehouse

Zimmerman, Tammy M.; Risser, Dennis W.

2005-01-01

This report describes the results of a study conducted by the U.S. Geological Survey, in cooperation with the Pennsylvania Department of Conservation and Natural Resources, Bureau of Topographic and Geologic Survey, to determine drought-sensitive aquifer settings in southeastern Pennsylvania. Because all or parts of southeastern Pennsylvania have been in drought-warning or drought-emergency status during 6 of the past 10 years from 1994 through 2004, this information should aid well owners, drillers, and water-resource managers in guiding appropriate well construction and sustainable use of Pennsylvania's water resources. 'Drought-sensitive' aquifer settings are defined for this study as areas unable to supply adequate quantities of water to wells during drought. Using information from previous investigations and a knowledge of the hydrogeology and topography of the study area, drought-sensitive aquifer settings in southeastern Pennsylvania were hypothesized as being associated with two factors - a water-table decline (WTD) index and topographic setting. The WTD index is an estimate of the theoretical water-table decline at the ground-water divide for a hypothetical aquifer with idealized geometry. The index shows the magnitude of ground-water decline after cessation of recharge is a function of (1) distance from stream to divide, (2) ground-water recharge rate, (3) transmissivity, (4) specific yield, and (5) duration of the drought. WTD indices were developed for 39 aquifers that were subsequently grouped into categories of high, moderate, and low WTD index. Drought-sensitive settings determined from the hypothesized factors were compared to locations of wells known to have been affected (gone dry, replaced, or deepened) during recent droughts. Information collected from well owners, drillers, and public agencies identified 2,016 wells affected by drought during 1998-2002. Most of the available data on the location of drought-affected wells in the study area were from Chester and Montgomery Counties because those counties have well-construction regulations that identify wells that failed during drought. The locations of drought-affected wells in Chester and Montgomery Counties indicated the most highly sensitive settings are uplands and slopes in aquifers with high WTD index and uplands in aquifers with moderate WTD index. The least sensitive settings are in aquifers with low WTD index, in valleys, or on slopes. A map was developed showing the relative drought sensitivity (low, moderate, and high) of aquifers in southeastern Pennsylvania. Study results were limited by the inability to obtain much information about the location of drought-affected wells, with the exception of Montgomery and Chester Counties. Also, the construction characteristics (particularly depth) of drought-affected wells generally were not available. Well depth could be used to distinguish between problems caused by shallow well depth (generally less than 100 ft) and those caused by deficiency of the aquifer to supply water. With the exception of owner-derived information from a public survey on drought-affected wells (35 wells), depth data were not obtained. Data from the 35 drought-affected wells indicated most were drilled (not dug) and were completed to depths greater than 100 feet. This finding indicates that the affects of recent droughts in southeastern Pennsylvania were not restricted to shallow dug wells, but also affected deeper drilled wells.

PSOCT studies of intervertebral disk

NASA Astrophysics Data System (ADS)

Matcher, Stephen J.; Winlove, Peter C.; Gangnus, Sergey V.

2004-07-01

Polarization-sensitive optical coherence tomography (PSOCT) is an emerging optical imaging technique that is sensitive to the birefringence properties of tissues. It thus has applications in studying the large-scale ordering of collagen fibers within connective tissues. This ordering not only provides useful insights into the relationship between structure and function for various anatomical structures but also is an indicator of pathology. Intervertebral disk is an elastic tissue of the spine and possesses a 3-D collagen structure well suited to study using PSOCT. Since the outer layer of the disk has a lamellar structure with collagen fibers oriented in a trellis-like arrangement between lamellae, the birefringence fast-axis shows pronounced variations with depth, on a spatial scale of about 100 μm. The lamellar thickness varies with age and possibly with disease. We have used a polarisation-sensitive optical coherence tomography system to measure the birefringence properties of freshly excised, hydrated bovine caudal intervertebral disk and compared this with equine flexor tendon. Our results clearly demonstrate the ability of PSOCT to detect the outer three lamellae, down to a depth of at least 700 μm, via discontinuities in the depth-resolved retardance. We have applied a simple semi-empirical model based on Jones calculus to quantify the variation in the fast-axis orientation with depth. Our data and modeling is in broad agreement with previous studies using x-ray diffraction and polarization microscopy applied to histological sections of dehydrated disk. Our results imply that PSOCT may prove a useful tool to study collagen organisation within intervertebral disk in vitro and possibly in vivo and its variation with age and disease.

Differential Muon Tomography to Continuously Monitor Changes in the Composition of Subsurface Fluids

NASA Technical Reports Server (NTRS)

Coleman, Max; Kudryavtsev, Vitaly A.; Spooner, Neil J.; Fung, Cora; Gluyas, John

2013-01-01

Muon tomography has been used to seek hidden chambers in Egyptian pyramids and image subsurface features in volcanoes. It seemed likely that it could be used to image injected, supercritical carbon dioxide as it is emplaced in porous geological structures being used for carbon sequestration, and also to check on subsequent leakage. It should work equally well in any other application where there are two fluids of different densities, such as water and oil, or carbon dioxide and heavy oil in oil reservoirs. Continuous monitoring of movement of oil and/or flood fluid during enhanced oil recovery activities for managing injection is important for economic reasons. Checking on leakage for geological carbon storage is essential both for safety and for economic purposes. Current technology (for example, repeat 3D seismic surveys) is expensive and episodic. Muons are generated by high- energy cosmic rays resulting from supernova explosions, and interact with gas molecules in the atmosphere. This innovation has produced a theoretical model of muon attenuation in the thickness of rock above and within a typical sandstone reservoir at a depth of between 1.00 and 1.25 km. Because this first simulation was focused on carbon sequestration, the innovators chose depths sufficient for the pressure there to ensure that the carbon dioxide would be supercritical. This innovation demonstrates for the first time the feasibility of using the natural cosmic-ray muon flux to generate continuous tomographic images of carbon dioxide in a storage site. The muon flux is attenuated to an extent dependent on, amongst other things, the density of the materials through which it passes. The density of supercritical carbon dioxide is only three quarters that of the brine in the reservoir that it displaces. The first realistic simulations indicate that changes as small as 0.4% in the storage site bulk density could be detected (equivalent to 7% of the porosity, in this specific case). The initial muon flux is effectively constant at the surface of the Earth. Sensitivity of the method would be decreased with increasing depth. However, sensitivity can be improved by emplacing a greater array of particle detectors at the base of the reservoir.

Hydrologic Regulation of Plant Rooting Depth and Vice Versa

NASA Astrophysics Data System (ADS)

Fan, Y.; Miguez-Macho, G.

2017-12-01

How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

Uncertainty in cloud optical depth estimates made from satellite radiance measurements

NASA Technical Reports Server (NTRS)

Pincus, Robert; Szczodrak, Malgorzata; Gu, Jiujing; Austin, Philip

1995-01-01

The uncertainty in optical depths retrieved from satellite measurements of visible wavelength radiance at the top of the atmosphere is quantified. Techniques are briefly reviewed for the estimation of optical depth from measurements of radiance, and it is noted that these estimates are always more uncertain at greater optical depths and larger solar zenith angles. The lack of radiometric calibration for visible wavelength imagers on operational satellites dominates the uncertainty retrievals of optical depth. This is true for both single-pixel retrievals and for statistics calculated from a population of individual retrievals. For individual estimates or small samples, sensor discretization can also be significant, but the sensitivity of the retrieval to the specification of the model atmosphere is less important. The relative uncertainty in calibration affects the accuracy with which optical depth distributions measured by different sensors may be quantitatively compared, while the absolute calibration uncertainty, acting through the nonlinear mapping of radiance to optical depth, limits the degree to which distributions measured by the same sensor may be distinguished.

Exploring Sources of Uncertainties in Global Radial Anisotropy Models

NASA Astrophysics Data System (ADS)

Xing, Z.; Beghein, C.; Yuan, K.

2013-12-01

We investigate sources of uncertainties in radial anisotropy models with a focus on the transition zone (TZ). Radial anisotropy describes the velocity difference between horizontally (SH) and vertically (SV) polarized shear waves. Its presence in the top 200 km of the mantle is well documented and thought of as an indicator of deformation by dislocation creep due to mantle shear. There is however no consensus regarding its presence at larger depths, which affects our understanding of deep upper mantle deformation. Several of the models that display radial anisotropy in the TZ are characterized by SH waves faster than SV waves (VSH>VSV) at these depths. Model VTLK08 (Visser et al., 2008) is however characterized by VSV>VSH in the TZ. The first part of this study aims at determining the origin of this discrepancy and the robustness of the VSV>VSH TZ signal in VTLK08. We used the global phase velocity maps of Visser et al (2008) for fundamental and higher mode Love and Rayleigh waves, which provide sensitivity to structure well below the TZ. We first tested the effect of imposing prior crustal corrections instead of inverting for the Moho depth as in VTLK08. We applied non-linear crustal corrections to the data on a 5 by 5 degree grid using CRUST2.0, and calculated laterally varying sensitivity kernels to account for the effect of the crust on the partial derivatives. We employed a depth parametrization in terms of cubic splines of varying depth spacing defined between the local Moho and 1400 km depth. We applied similar prior relationships between P- and S-wave elastic parameters as in VTLK08, and solved the problem using both a traditional inversion method and the same Neighbourhod Algorithm (NA) forward modeling approach as in VTLK08. The first stage of the NA enables us to randomly sample the model space, including the null space. The second stage describes each model parameter with probability density functions, thereby providing quantitative model uncertainties. Our preliminary results show that the TZ signal in VTLK08 is not strongly dependent on crustal corrections or on the inversion method employed. In both cases, we obtained average anisotropy and velocity profiles consistent with VTLK08, with 2% VSV>VSH anisotropy in the TZ for the best fitting model obtained with NA. The 3-D anisotropy anomalies are in agreement with VTLK08 at most depths. However the models differ in the TZ under the central Pacific where we found a positive anisotropy signal that does not appear in VTLK08. With the model uncertainties provided by the second stage of the NA, we will be able to determine whether the significance of this positive signal. The next phase of our work will consist in analyzing the effect of assuming that P- and S-wave anisotropies are proportional, an assumption often made to deal with model non-uniqueness. These prior constraints do not strongly affect the most likely model in the uppermost 200km of the mantle (Beghein, 2010) but they may affect mantle models at greater depths. The use of the NA will enable us to determine whether the introduction of such prior significantly affects the range of models compatible with the data, which in turn will enable us to determine whether the TZ signal of VTLK08 is well constrained by the data.

Measuring soil frost depth in forest ecosystems with ground penetrating radar

Treesearch

John R. Butnor; John L. Campbell; James B. Shanley; Stanley Zarnoch

2014-01-01

Soil frost depth in forest ecosystems can be variable and depends largely on early winter air temperatures and the amount and timing of snowfall. A thorough evaluation of ecological responses to seasonally frozen ground is hampered by our inability to adequately characterize the frequency, depth, duration and intensity of soil frost events. We evaluated the use of...

Noninvasive measurement of burn wound depth applying infrared thermal imaging (Conference Presentation)

NASA Astrophysics Data System (ADS)

Jaspers, Mariëlle E.; Maltha, Ilse M.; Klaessens, John H.; Vet, Henrica C.; Verdaasdonk, Rudolf M.; Zuijlen, Paul P.

2016-02-01

In burn wounds early discrimination between the different depths plays an important role in the treatment strategy. The remaining vasculature in the wound determines its healing potential. Non-invasive measurement tools that can identify the vascularization are therefore considered to be of high diagnostic importance. Thermography is a non-invasive technique that can accurately measure the temperature distribution over a large skin or tissue area, the temperature is a measure of the perfusion of that area. The aim of this study was to investigate the clinimetric properties (i.e. reliability and validity) of thermography for measuring burn wound depth. In a cross-sectional study with 50 burn wounds of 35 patients, the inter-observer reliability and the validity between thermography and Laser Doppler Imaging were studied. With ROC curve analyses the ΔT cut-off point for different burn wound depths were determined. The inter-observer reliability, expressed by an intra-class correlation coefficient of 0.99, was found to be excellent. In terms of validity, a ΔT cut-off point of 0.96°C (sensitivity 71%; specificity 79%) differentiates between a superficial partial-thickness and deep partial-thickness burn. A ΔT cut-off point of -0.80°C (sensitivity 70%; specificity 74%) could differentiate between a deep partial-thickness and a full-thickness burn wound. This study demonstrates that thermography is a reliable method in the assessment of burn wound depths. In addition, thermography was reasonably able to discriminate among different burn wound depths, indicating its potential use as a diagnostic tool in clinical burn practice.

Design and evaluation of a high sensitivity spiral TDR scour sensor

NASA Astrophysics Data System (ADS)

Gao, Quan; (Bill Yu, Xiong

2015-08-01

Bridge scour accounts for more than half of the reported bridge failures in the United States. Scour monitoring technology based on time domain reflectometry (TDR) features the advantages of being automatic and inexpensive. The senior author’s team has developed a few generations of a TDR bridge scour monitoring system, which have succeeded in both laboratory and field evaluations. In this study, an innovative spiral TDR sensor is proposed to further improve the sensitivity of the TDR sensor in scour detection. The spiral TDR sensor is made of a parallel copper wire waveguide wrapped around a mounting rod. By using a spiral path for the waveguide, the TDR sensor achieves higher sensitivity than the traditional straight TDR probes due to longer travel distance of the electromagnetic (EM) wave per unit length in the spiral probe versus traditional probe. The performance of the new TDR spiral scour sensor is validated by calibration with liquids with known dielectric constant and wet soils. Laboratory simulated scour-refilling experiments are performed to evaluate the performance of the new spiral probe in detecting the sediment-water interface and therefore the scour-refill process. The tests results indicate that scour depth variation of less than 2 cm can be easily detected by this new spiral sensor. A theory is developed based on the dielectric mixing model to simplify the TDR signal analyses for scour depth detection. The sediment layer thickness (directly related to scour depth) varies linearly with the square root of the bulk dielectric constant of the water-sediment mixture measured by the spiral TDR probe, which matches the results of theoretical prediction. The estimated sediment layer thickness and therefore scour depth from the spiral TDR sensor agrees very well with that by direct physical measurement. The spiral TDR sensor is four times more sensitive than a traditional straight TDR probe.

Modeling digital breast tomosynthesis imaging systems for optimization studies

NASA Astrophysics Data System (ADS)

Lau, Beverly Amy

Digital breast tomosynthesis (DBT) is a new imaging modality for breast imaging. In tomosynthesis, multiple images of the compressed breast are acquired at different angles, and the projection view images are reconstructed to yield images of slices through the breast. One of the main problems to be addressed in the development of DBT is the optimal parameter settings to obtain images ideal for detection of cancer. Since it would be unethical to irradiate women multiple times to explore potentially optimum geometries for tomosynthesis, it is ideal to use a computer simulation to generate projection images. Existing tomosynthesis models have modeled scatter and detector without accounting for oblique angles of incidence that tomosynthesis introduces. Moreover, these models frequently use geometry-specific physical factors measured from real systems, which severely limits the robustness of their algorithms for optimization. The goal of this dissertation was to design the framework for a computer simulation of tomosynthesis that would produce images that are sensitive to changes in acquisition parameters, so an optimization study would be feasible. A computer physics simulation of the tomosynthesis system was developed. The x-ray source was modeled as a polychromatic spectrum based on published spectral data, and inverse-square law was applied. Scatter was applied using a convolution method with angle-dependent scatter point spread functions (sPSFs), followed by scaling using an angle-dependent scatter-to-primary ratio (SPR). Monte Carlo simulations were used to generate sPSFs for a 5-cm breast with a 1-cm air gap. Detector effects were included through geometric propagation of the image onto layers of the detector, which were blurred using depth-dependent detector point-spread functions (PRFs). Depth-dependent PRFs were calculated every 5-microns through a 200-micron thick CsI detector using Monte Carlo simulations. Electronic noise was added as Gaussian noise as a last step of the model. The sPSFs and detector PRFs were verified to match published data, and noise power spectrum (NPS) from simulated flat field images were shown to match empirically measured data from a digital mammography unit. A novel anthropomorphic software breast phantom was developed for 3D imaging simulation. Projection view images of the phantom were shown to have similar structure as real breasts in the spatial frequency domain, using the power-law exponent beta to quantify tissue complexity. The physics simulation and computer breast phantom were used together, following methods from a published study with real tomosynthesis images of real breasts. The simulation model and 3D numerical breast phantoms were able to reproduce the trends in the experimental data. This result demonstrates the ability of the tomosynthesis physics model to generate images sensitive to changes in acquisition parameters.

Sensitivity of stream flow and water table depth to potential climatic variability in a coastal forested watershed

Treesearch

Zhaohua Dai; Carl Trettin; Changsheng Li; Devendra M. Amatya; Ge Sun; Harbin Li

2010-01-01

A physically based distributed hydrological model, MIKE SHE, was used to evaluate the effects of altered temperature and precipitation regimes on the streamflow and water table in a forested watershed on the southeastern Atlantic coastal plain. The model calibration and validation against both streamflow and water table depth showed that the MIKE SHE was applicable for...

The Seismic Velocity In Gas-charged Magma

NASA Astrophysics Data System (ADS)

Sturton, S.; Neuberg, J. W.

2001-12-01

Long-period and hybrid events, seen at the Soufrière Hills Volcano, Montserrat, show dominant low frequency content suggesting the seismic wavefield is formed as a result of interface waves at the boundary between a fluid and a solid medium. This wavefield will depend on the impedance contrast between the two media and therefore the difference in seismic velocity. For a gas-charged magma, increasing pressure with depth reduces the volume of gas exsolved, increasing the seismic velocity with depth in the conduit. The seismic radiation pattern along the conduit can then be modelled. Where single events merge into tremor, gliding lines can sometimes be seen in the spectra and indicate either changes in the seismic parameters with time or varying triggering rates of single events.The differential equation describing the time dependence of bubble growth by diffusion is solved numerically for a stationary magma column undergoing a decompression event. The volume of gas is depth dependent and increases with time as the bubbles grow and expand. It is used to calculate the depth and time dependence of the density, pressure and seismic velocity. The effect of different viscosities associated with different magma types and concentration of water in the melt on the rate of bubble growth is explored. Crystal growth, which increases the concentration of water in the melt, affects the amount of gas that can be exsolved.

Temperature sensitivity differences with depth and season between carbon, nitrogen, and phosphorus cycling enzyme activities in an ombrotrophic peatland system

NASA Astrophysics Data System (ADS)

Steinweg, J. M.; Kostka, J. E.; Hanson, P. J.; Schadt, C. W.

2017-12-01

Northern peatlands have large amounts of soil organic matter due to reduced decomposition. Breakdown of organic matter is initially mediated by extracellular enzymes, the activity of which may be controlled by temperature, moisture, and substrate availability, all of which vary seasonally throughout the year and with depth. In typical soils the majority of the microbial biomass and decomposition occurs within the top 30cm due to reduced organic matter inputs in the subsurface however peatlands by their very nature contain large amounts of organic matter throughout their depth profile. We hypothesized that potential enzyme activity would be greatest at the surface of the peat due to a larger microbial biomass compared to 40cm and 175cm below the surface and that temperature sensitivity would be greatest at the surface during winter but lowest during the summer due to high temperatures and enzyme efficiency. Peat samples were collected in February, July, and August 2012 from the DOE Spruce and Peatland Responses Under Climatic and Environmental Change project at Marcell Experimental Forest S1 bog. We measured potential activity of hydrolytic enzymes involved in three different nutrient cycles: beta-glucosidase (carbon), leucine amino peptidase (nitrogen), and phosphatase (phosphorus) at 15 temperature points ranging from 3°C to 65°C. Enzyme activity decreased with depth as expected but there was no concurrent change in activation energy (Ea). The reduction in enzyme activity with depth indicates a smaller pool which coincided with a decreased microbial biomass. Differences in enzyme activity with depth also mirrored the changes in peat composition from the acrotelm to the catotelm. Season did play a role in temperature sensitivity with Ea of β-glucosidase and phosphatase being the lowest in August as expected but leucine amino peptidase (a nitrogen acquiring enzyme) Ea was not influenced by season. As temperatures rise, especially in winter months, enzymatic carbon and phosphorus acquisition in the Marcell bog may increase whereas nitrogen acquisition would remain unchanged. The lack of temperature response for leucine amino peptidase has been measured in other systems but may be less of a concern in the Marcell bog due to low microbial biomass and enzymatic activity at depth and relatively low peat C:N ratios.

Dynamic Scaling of Colloidal Gel Formation at Intermediate Concentrations

DOE PAGES

Zhang, Qingteng; Bahadur, Divya; Dufresne, Eric M.; ...

2017-10-25

Here, we have examined the formation and dissolution of gels composed of intermediate volume-fraction nanoparticles with temperature-dependent short-range attractions using small-angle x-ray scatter- ing (SAXS), x-ray photon correlation spectroscopy (XPCS), and rheology to obtain nanoscale and macroscale sensitivity to structure and dynamics. Gel formation after temperature quenches to the vicinity of the rheologically-determined gel temperature, T gel, was characterized via the slow-down of dynamics and changes in microstructure observed in the intensity autocorrelation functions and structure factor, respectively, as a function of quench depth (ΔT = T quench - T gel), wave vector, and formation time (t f). We findmore » similar patterns in the slow-down of dynamics that maps the wave-vector-dependent dynamics at a particular ΔT and t f to that at other ΔTs and t fs via an effective scaling temperature, Ts. A single Ts applies to a broad range of ΔT and tf but does depend on the particle size. The rate of formation implied by the scaling is a far stronger function of ΔT than that of the attraction strength between colloids. Finally, we interpret this strong temperature de- pendence in terms of changes in cooperative bonding required to form stable, energetically favored, local structures.« less

Dynamic Scaling of Colloidal Gel Formation at Intermediate Concentrations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Qingteng; Bahadur, Divya; Dufresne, Eric M.

Here, we have examined the formation and dissolution of gels composed of intermediate volume-fraction nanoparticles with temperature-dependent short-range attractions using small-angle x-ray scatter- ing (SAXS), x-ray photon correlation spectroscopy (XPCS), and rheology to obtain nanoscale and macroscale sensitivity to structure and dynamics. Gel formation after temperature quenches to the vicinity of the rheologically-determined gel temperature, T gel, was characterized via the slow-down of dynamics and changes in microstructure observed in the intensity autocorrelation functions and structure factor, respectively, as a function of quench depth (ΔT = T quench - T gel), wave vector, and formation time (t f). We findmore » similar patterns in the slow-down of dynamics that maps the wave-vector-dependent dynamics at a particular ΔT and t f to that at other ΔTs and t fs via an effective scaling temperature, Ts. A single Ts applies to a broad range of ΔT and tf but does depend on the particle size. The rate of formation implied by the scaling is a far stronger function of ΔT than that of the attraction strength between colloids. Finally, we interpret this strong temperature de- pendence in terms of changes in cooperative bonding required to form stable, energetically favored, local structures.« less

Quantifying the clay content with borehole depth and impact on reservoir flow

NASA Astrophysics Data System (ADS)

Sarath Kumar, Aaraellu D.; Chattopadhyay, Pallavi B.

2017-04-01

This study focuses on the application of reservoir well log data and 3D transient numerical model for proper optimization of flow dynamics and hydrocarbon potential. Fluid flow through porous media depends on clay content that controls porosity, permeability and pore pressure. The pressure dependence of permeability is more pronounced in tight formations. Therefore, preliminary clay concentration analysis and geo-mechanical characterizations have been done by using wells logs. The assumption of a constant permeability for a reservoir is inappropriate and therefore the study deals with impact of permeability variation for pressure-sensitive formation. The study started with obtaining field data from available well logs. Then, the mathematical models are developed to understand the efficient extraction of oil in terms of reservoir architecture, porosity and permeability. The fluid flow simulations have been done using COMSOL Multiphysics Software by choosing time dependent subsurface flow module that is governed by Darcy's law. This study suggests that the reservoir should not be treated as a single homogeneous structure with unique porosity and permeability. The reservoir parameters change with varying clay content and it should be considered for effective planning and extraction of oil. There is an optimum drawdown for maximum production with varying permeability in a reservoir.

SU-F-T-68: Characterizes of Microdetectors in Electron Beam Dosimetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Das, I; Andersen, A; Akino, Y

Purpose: Electron beam dosimetry requires high resolution data due to finite range that can be accomplished with small volume detectors. The small-field used in advance technologies in photon beam has created a market for microdetectors, however characteristics are significantly variable in photon beams and relatively unknown in electron beam that is investigated in this study. Methods: Among nearly 2 dozen microdetectors that have been investigated in small fields of photon beam, two popular detectors (microDiamond 60019 (PTW)) and W1 plastic scintillator detector (Standard Imaging)) that are tissue equivalent and have very small sensitive volume are selected. Electron beams from Varianmore » linear accelerators were used to investigate dose linearity dose rate dependence, energy dependence, depth dose and profiles in a reference condition in a water phantom. For W1 that has its own Supermax electrometer point by point measurements were performed. For microDiamond, a PTW-scanning tank was used for both scanning and point dose measurements. Results: W1 detector showed excellent dose linearity (r{sup 2} =1.0) from 5–500 MU either with variation of dose rate or beam energy. Similar findings were also observed for microdiamond with r{sup 2}=1.0. Percent variations in dose/MU for W1 and microDiamond were 0.2–1.1% and 0.4–1.2%, respectively among dose rate and beam energy. This variation was random for microDiamond, whereas it decreased with beam energy and dose rate for W1. The depth dose and profiles were within ±1 mm for both detectors. Both detectors did not show any energy dependence in electron beams. Conclusion: Both microDiamond and W1 detectors provided superior characteristics of beam parameters in electron beam including dose, dose rate linearity and energy independence. Both can be used in electron beam except W1 require point by point measurements and microdiamond requires 1500 MU for initial quenching.« less

Magnetotelluric Detection Thresholds as a Function of Leakage Plume Depth, TDS and Volume

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, X.; Buscheck, T. A.; Mansoor, K.

We conducted a synthetic magnetotelluric (MT) data analysis to establish a set of specific thresholds of plume depth, TDS concentration and volume for detection of brine and CO 2 leakage from legacy wells into shallow aquifers in support of Strategic Monitoring Subtask 4.1 of the US DOE National Risk Assessment Partnership (NRAP Phase II), which is to develop geophysical forward modeling tools. 900 synthetic MT data sets span 9 plume depths, 10 TDS concentrations and 10 plume volumes. The monitoring protocol consisted of 10 MT stations in a 2×5 grid laid out along the flow direction. We model the MTmore » response in the audio frequency range of 1 Hz to 10 kHz with a 50 Ωm baseline resistivity and the maximum depth up to 2000 m. Scatter plots show the MT detection thresholds for a trio of plume depth, TDS concentration and volume. Plumes with a large volume and high TDS located at a shallow depth produce a strong MT signal. We demonstrate that the MT method with surface based sensors can detect a brine and CO 2 plume so long as the plume depth, TDS concentration and volume are above the thresholds. However, it is unlikely to detect a plume at a depth larger than 1000 m with the change of TDS concentration smaller than 10%. Simulated aquifer impact data based on the Kimberlina site provides a more realistic view of the leakage plume distribution than rectangular synthetic plumes in this sensitivity study, and it will be used to estimate MT responses over simulated brine and CO 2 plumes and to evaluate the leakage detectability. Integration of the simulated aquifer impact data and the MT method into the NRAP DREAM tool may provide an optimized MT survey configuration for MT data collection. This study presents a viable approach for sensitivity study of geophysical monitoring methods for leakage detection. The results come in handy for rapid assessment of leakage detectability.« less

Evaluation of a near-infrared-type contrast medium extravasation detection system using a swine model.

PubMed

Ishihara, Toshihiro; Kobayashi, Tatsushi; Ikeno, Naoya; Hayashi, Takayuki; Sakakibara, Masahiro; Niki, Noboru; Satake, Mitsuo; Moriyama, Noriyuki

2014-01-01

To refine the development and evaluate the near-infrared (NIR) extravasation detection system and its ability to detect extravasation during a contrast-enhanced computed tomography (CT) examination. The NIR extravasation detection system projects the NIR light through the surface of the human skin then, using its sensory system, will monitor the changes in the amount of NIR that reflected, which varies based on absorption properties.Seven female pigs were used to evaluate the contrast media extravasation detection system, using a 20-gauge intravenous catheter, when injected at a rate of 1 mL/s into 4 different locations just under the skin in the thigh section. Using 3-dimensional CT images, we evaluated the extravasations between time and volume, depth and volume, and finally depth and time to detect. We confirmed that the NIR light, 950-nm wavelength, used by the extravasation detection system is well absorbed by contrast media, making changes easy to detect. The average time to detect an extravasation was 2.05 seconds at a depth of 2.0 mm below the skin with a volume of 1.3 mL, 2.57 seconds at a depth between 2.1 and 5 mm below the skin and a volume of 3.47 mL, 10.5 seconds for depths greater than 5.1 mm and a volume of 11.1 mL. The detection accuracy was significantly deteriorated when the depth exceeded 5.0 mm (Tukey-Kramer, P < 0.05) CONCLUSIONS: The extravasation system detection system that is using NIR has a high level of detection sensitivity. The sensitivity enables the system to detect extravasation at depths less than 2 mm with a volume of 1.5 mL and at depths less than 5 mm with a volume of 3.5 mL. The extravasation detection system could be suitable for use during examinations.

Assessing Marine Species Exposure to Ocean Acidification

NASA Astrophysics Data System (ADS)

Jewett, E.; Busch, S.; McElhany, P.; Gledhill, D. K.; Milke, L. M.; Wieczorek, D.

2016-02-01

Assessing the vulnerability of society to ocean acidification (OA) demands an understanding of both the sensitivity of economically important species together with an organism's exposure to potentially harmful carbonate chemistry conditions. However, research has revealed that sensitivity to OA is frequently life-stage dependent and the environmental conditions experienced by a marine organism often vary with life-stage. Enhancing the development of a National Ocean Acidification Observing Network (NOA-ON) and establishing appropriate treatment conditions for experimental studies requires careful consideration of where the vulnerable life-stages of an organism reside in space (e.g., estuary versus oceanic), depth (e.g., surface mixed layer versus benthos), and time (e.g., diel vertical migration, seasonality of the chemical environment within the context of an organism life cycle). Few studies have explicitly attempted to document carbonate chemistry dynamics specific to a given organism's life-cycle. Here we estimate carbonate dynamics in terms of aragonite saturation state range and variability within the U.S. Northeast and West Coast through the application of NOAA's NOA-ON assets mapped out with respect to the life stages of economically important species within those regions. Two economically important species will be considered for which the life-cycles are well known along with the sensitivities to OA for early life-stages: Atlantic Surf Clam in the northeast and Dungeness Crab of the northwest coast of the U.S. Other species may also be considered.

Vision in the deep sea.

PubMed

Warrant, Eric J; Locket, N Adam

2004-08-01

The deep sea is the largest habitat on earth. Its three great faunal environments--the twilight mesopelagic zone, the dark bathypelagic zone and the vast flat expanses of the benthic habitat--are home to a rich fauna of vertebrates and invertebrates. In the mesopelagic zone (150-1000 m), the down-welling daylight creates an extended scene that becomes increasingly dimmer and bluer with depth. The available daylight also originates increasingly from vertically above, and bioluminescent point-source flashes, well contrasted against the dim background daylight, become increasingly visible. In the bathypelagic zone below 1000 m no daylight remains, and the scene becomes entirely dominated by point-like bioluminescence. This changing nature of visual scenes with depth--from extended source to point source--has had a profound effect on the designs of deep-sea eyes, both optically and neurally, a fact that until recently was not fully appreciated. Recent measurements of the sensitivity and spatial resolution of deep-sea eyes--particularly from the camera eyes of fishes and cephalopods and the compound eyes of crustaceans--reveal that ocular designs are well matched to the nature of the visual scene at any given depth. This match between eye design and visual scene is the subject of this review. The greatest variation in eye design is found in the mesopelagic zone, where dim down-welling daylight and bio-luminescent point sources may be visible simultaneously. Some mesopelagic eyes rely on spatial and temporal summation to increase sensitivity to a dim extended scene, while others sacrifice this sensitivity to localise pinpoints of bright bioluminescence. Yet other eyes have retinal regions separately specialised for each type of light. In the bathypelagic zone, eyes generally get smaller and therefore less sensitive to point sources with increasing depth. In fishes, this insensitivity, combined with surprisingly high spatial resolution, is very well adapted to the detection and localisation of point-source bioluminescence at ecologically meaningful distances. At all depths, the eyes of animals active on and over the nutrient-rich sea floor are generally larger than the eyes of pelagic species. In fishes, the retinal ganglion cells are also frequently arranged in a horizontal visual streak, an adaptation for viewing the wide flat horizon of the sea floor, and all animals living there. These and many other aspects of light and vision in the deep sea are reviewed in support of the following conclusion: it is not only the intensity of light at different depths, but also its distribution in space, which has been a major force in the evolution of deep-sea vision.

A systematic review of the Diagnostic and Statistical Manual diagnostic criteria for nicotine dependence.

PubMed

DiFranza, Joseph; Ursprung, W W Sanouri; Lauzon, Béatrice; Bancej, Christina; Wellman, Robert J; Ziedonis, Douglas; Kim, Sun S; Gervais, André; Meltzer, Bruce; McKay, Colleen E; O'Loughlin, Jennifer; Okoli, Chizimuzo T C; Fortuna, Lisa R; Tremblay, Michèle

2010-05-01

The Diagnostic and Statistical Manual diagnostic criteria for nicotine dependence (DSM-ND) are based on the proposition that dependence is a syndrome that can be diagnosed only when a minimum of 3 of the 7 proscribed features are present. The DSM-ND criteria are an accepted research measure, but the validity of these criteria has not been subjected to a systematic evaluation. To systematically review evidence of validity and reliability for the DSM-ND criteria, a literature search was conducted of 16 national and international databases. Each article with original data was independently reviewed by two or more reviewers. In total, 380 potentially relevant articles were examined and 169 were reviewed in depth. The DSM-ND criteria have seen wide use in research settings, but sensitivity and specificity are well below the accepted standards for clinical applications. Predictive validity is generally poor. The 7 DSM-ND criteria are regarded as having face validity, but no data support a 3-symptom ND diagnostic threshold, or a 4-symptom withdrawal syndrome threshold. The DSM incorrectly states that daily smoking is a prerequisite for withdrawal symptoms. The DSM shows poor to modest concurrence with all other measures of nicotine dependence, smoking behaviors and biological measures of tobacco use. The data support the DSM-ND criteria as a valid measure of nicotine dependence severity for research applications. However, the data do not support the central premise of a 3-symptom diagnostic threshold, and no data establish that the DSM-ND criteria provide an accurate diagnosis of nicotine dependence. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

Dynamic Rupture Simulations of 11 March 2011 Tohoku Earthquake

NASA Astrophysics Data System (ADS)

Kozdon, J. E.; Dunham, E. M.

2012-12-01

There is strong observational evidence that the 11 March 2011 Tohoku earthquake rupture reached the seafloor. This was unexpected because the shallow portion of the plate interface is believed to be frictionally stable and thus not capable of sustaining coseismic rupture. In order to explore this seeming inconsistency we have developed a two-dimensional dynamic rupture model of the Tohoku earthquake. The model uses a complex fault, seafloor, and material interface structure as derived from seismic surveys. We use a rate-and-state friction model with steady state shear strength depending logarithmically on slip velocity, i.e., there is no dynamic weakening in the model. The frictional parameters are depth dependent with the shallowest portions of the fault beneath the accretionary prism being velocity strengthening. The total normal stress on the fault is taken to be lithostatic and the pore pressure is hydrostatic until a maximum effective normal stress is reached (40 MPa in our preferred model) after which point the pore pressure follows the lithostatic gradient. We also account for poroelastic buffering of effective normal stress changes on the fault. The off-fault response is linear elastic. Using this model we find that large stress changes are dynamically transmitted to the shallowest portions of the fault by waves released by deep slip that are reflected off the seafloor. These stress changes are significant enough to drive the rupture through a velocity strengthening region that is tens of kilometers long. Rupture to the trench is therefore consistent with standard assumptions about depth-dependence of subduction zone properties, and does not require extreme dynamic weakening, shallow high stress drop asperities, or other exceptional processes. We also make direct comparisons with measured seafloor deformation and onshore 1-Hz GPS data from the Tohoku earthquake. Through these comparisons we are able to determine the sensitivity of these data to several dynamic source parameters (prestress, seismogenic depth, and the extent and frictional properties of the shallow plate interface). We find that there is a trade-off between the near-trench frictional properties and effective normal stress, particularly for onshore measurements. That is, the data can be equally well fit by either a velocity strengthening or velocity weakening near-trench fault segment, provided that compensating adjustments are also made to the maximum effective normal stress on the fault. On the other hand, the seismogenic depth is fairly well constrained from the static displacement field, independent of effective normal stress and near-trench properties. Finally, we show that a water layer (modeled as an isotropic linear acoustic material) has a negligible effect on the rupture process. That said, the inclusion of a water layer allows us to make important predictions concerning hydroacoustic signals that were observed by ocean bottom pressure sensors.

Auditory sensitivity to spectral modulation phase reversal as a function of modulation depth

PubMed Central

Grose, John

2018-01-01

The present study evaluated auditory sensitivity to spectral modulation by determining the modulation depth required to detect modulation phase reversal. This approach may be preferable to spectral modulation detection with a spectrally flat standard, since listeners appear unable to perform the task based on the detection of temporal modulation. While phase reversal thresholds are often evaluated by holding modulation depth constant and adjusting modulation rate, holding rate constant and adjusting modulation depth supports rate-specific assessment of modulation processing. Stimuli were pink noise samples, filtered into seven octave-wide bands (0.125–8 kHz) and spectrally modulated in dB. Experiment 1 measured performance as a function of modulation depth to determine appropriate units for adaptive threshold estimation. Experiment 2 compared thresholds in dB for modulation detection with a flat standard and modulation phase reversal; results supported the idea that temporal cues were available at high rates for the former but not the latter. Experiment 3 evaluated spectral modulation phase reversal thresholds for modulation that was restricted to either one or two neighboring bands. Flanking bands of unmodulated noise had a larger detrimental effect on one-band than two-band targets. Thresholds for high-rate modulation improved with increasing carrier frequency up to 2 kHz, whereas low-rate modulation appeared more consistent across frequency, particularly in the two-band condition. Experiment 4 measured spectral weights for spectral modulation phase reversal detection and found higher weights for bands in the spectral center of the stimulus than for the lowest (0.125 kHz) or highest (8 kHz) band. Experiment 5 compared performance for highly practiced and relatively naïve listeners, and found weak evidence of a larger practice effect at high than low spectral modulation rates. These results provide preliminary data for a task that may provide a better estimate of sensitivity to spectral modulation than spectral modulation detection with a flat standard. PMID:29621338

Calibrating the Spatiotemporal Root Density Distribution for Macroscopic Water Uptake Models Using Tikhonov Regularization

NASA Astrophysics Data System (ADS)

Li, N.; Yue, X. Y.

2018-03-01

Macroscopic root water uptake models proportional to a root density distribution function (RDDF) are most commonly used to model water uptake by plants. As the water uptake is difficult and labor intensive to measure, these models are often calibrated by inverse modeling. Most previous inversion studies assume RDDF to be constant with depth and time or dependent on only depth for simplification. However, under field conditions, this function varies with type of soil and root growth and thus changes with both depth and time. This study proposes an inverse method to calibrate both spatially and temporally varying RDDF in unsaturated water flow modeling. To overcome the difficulty imposed by the ill-posedness, the calibration is formulated as an optimization problem in the framework of the Tikhonov regularization theory, adding additional constraint to the objective function. Then the formulated nonlinear optimization problem is numerically solved with an efficient algorithm on the basis of the finite element method. The advantage of our method is that the inverse problem is translated into a Tikhonov regularization functional minimization problem and then solved based on the variational construction, which circumvents the computational complexity in calculating the sensitivity matrix involved in many derivative-based parameter estimation approaches (e.g., Levenberg-Marquardt optimization). Moreover, the proposed method features optimization of RDDF without any prior form, which is applicable to a more general root water uptake model. Numerical examples are performed to illustrate the applicability and effectiveness of the proposed method. Finally, discussions on the stability and extension of this method are presented.

Numerical modeling of porosity waves in the Nankai accretionary wedge décollement, Japan: implications for aseismic slip

NASA Astrophysics Data System (ADS)

Joshi, Ajit; Appold, Martin S.

2017-01-01

Seismic and hydrologic observations of the Nankai accretionary wedge décollement, Japan, show that overpressures at depths greater than ˜2 km beneath the seafloor could have increased to near lithostatic values due to sediment compaction and diagenesis, clay dehydration, and shearing. The resultant high overpressures are hypothesized then to have migrated in rapid surges or pulses called `porosity waves' up the dip of the décollement. Such high velocities—much higher than expected Darcy fluxes—are possible for porosity waves if the porous media through which the waves travel are deformable enough for porosity and permeability to increase strongly with increasing fluid pressure. The present study aimed to test the hypothesis that porosity waves can travel at rates (kilometers per day) fast enough to cause aseismic slip in the Nankai décollement. The hypothesis was tested using a one-dimensional numerical solution to the fluid mass conservation equation for elastic porous media. Results show that porosity waves generated at depths of ˜2 km from overpressures in excess of lithostatic pressure can propagate at rates sufficient to account for aseismic slip along the décollement over a wide range of hydrogeological conditions. Sensitivity analysis showed porosity wave velocity to be strongly dependent on specific storage, fluid viscosity, and the permeability-depth gradient. Overpressure slightly less than lithostatic pressure could also produce porosity waves capable of traveling at velocities sufficient to cause aseismic slip, provided that hydrogeologic properties of the décollement are near the limits of their geologically reasonable ranges.

Passive imaging of hydrofractures in the South Belridge diatomite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ilderton, D.C.; Patzek, T.W.; Rector, J.W.

1996-03-01

The authors present the results of a seismic analysis of two hydrofractures spanning the entire diatomite column (1,110--1,910 ft or 338--582 m) in Shell`s Phase 2 steam drive pilot in South Belridge, California. These hydrofractures were induced at two depths (1,110--1,460 and 1,560--1,910 ft) and imaged passively using the seismic energy released during fracturing. The arrivals of shear waves from the cracking rock (microseismic events) were recorded at a 1 ms sampling rate by 56 geophones in three remote observation wells, resulting in 10 GB of raw data. These arrival times were then inverted for the event locations, from whichmore » the hydrofracture geometry was inferred. A five-dimensional conjugate-gradient algorithm with a depth-dependent, but otherwise constant shear wave velocity model (CVM) was developed for the inversions. To validate CVM, they created a layered shear wave velocity model of the formation and used it to calculate synthetic arrival times from known locations chosen at various depths along the estimated fracture plane. These arrival times were then inverted with CVM and the calculated locations compared with the known ones, quantifying the systematic error associated with the assumption of constant shear wave velocity. They also performed Monte Carlo sensitivity analyses on the synthetic arrival times to account for all other random errors that exist in field data. After determining the limitations of the inversion algorithm, they hand-picked the shear wave arrival times for both hydrofractures and inverted them with CVM.« less

Testing LMC Microlensing Scenarios: The Discrimination Power of the SuperMACHO Microlensing Survey

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rest, A; Stubbs, C; Becker, A C

Characterizing the nature and spatial distribution of the lensing objects that produce the observed microlensing optical depth toward the Large Magellanic Cloud (LMC) remains an open problem. They present an appraisal of the ability of the SuperMACHO Project, a next-generation microlensing survey pointed toward the LMC, to discriminate between various proposed lensing populations. they consider two scenarios: lensing by a uniform foreground screen of objects and self-lensing of LMC stars. The optical depth for ''screen-lensing'' is essentially constant across the face of the LMC; whereas, the optical depth for self-lensing shows a strong spatial dependence. they have carried out extensivemore » simulations, based upon actual data obtained during the first year of the project, to assess the SuperMACHO survey's ability to discriminate between these two scenarios. In the simulations they predict the expected number of observed microlensing events for each of their fields by adding artificial stars to the images and estimating the spatial and temporal efficiency of detecting microlensing events using Monte-Carlo methods. They find that the event rate itself shows significant sensitivity to the choice of the LMC luminosity function shape and other parameters, limiting the conclusions which can be drawn from the absolute rate. By instead determining the differential event rate across the LMC, they can decrease the impact of these systematic uncertainties rendering the conclusions more robust. With this approach the SuperMACHO Project should be able to distinguish between the two categories of lens populations and provide important constraints on the nature of the lensing objects.« less

Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: a case study in oil palm (Elaeis guineensis).

PubMed

Pootakham, Wirulda; Sonthirod, Chutima; Naktang, Chaiwat; Jomchai, Nukoon; Sangsrakru, Duangjai; Tangphatsornruang, Sithichoke

2016-01-01

Advances in next generation sequencing have facilitated a large-scale single nucleotide polymorphism (SNP) discovery in many crop species. Genotyping-by-sequencing (GBS) approach couples next generation sequencing with genome complexity reduction techniques to simultaneously identify and genotype SNPs. Choice of enzymes used in GBS library preparation depends on several factors including the number of markers required, the desired level of multiplexing, and whether the enrichment of genic SNP is preferred. We evaluated various combinations of methylation-sensitive ( Aat II, Pst I, Msp I) and methylation-insensitive ( Sph I, Mse I) enzymes for their effectiveness in genome complexity reduction and enrichment of genic SNPs. We discovered that the use of two methylation-sensitive enzymes effectively reduced genome complexity and did not require a size selection step. On the contrary, the genome coverage of libraries constructed with methylation-insensitive enzymes was quite high, and the additional size selection step may be required to increase the overall read depth. We also demonstrated the effectiveness of methylation-sensitive enzymes in enriching for SNPs located in genic regions. When two methylation-insensitive enzymes were used, only 16% of SNPs identified were located in genes and 18% in the vicinity (± 5 kb) of the genic regions, while most SNPs resided in the intergenic regions. In contrast, a remarkable degree of enrichment was observed when two methylation-sensitive enzymes were employed. Almost two thirds of the SNPs were located either inside (32-36%) or in the vicinity (28-31%) of the genic regions. These results provide useful information to help researchers choose appropriate GBS enzymes in oil palm and other crop species.

The Case for Space-Borne Far-Infrared Line Surveys

NASA Technical Reports Server (NTRS)

Bock, J. J.; Bradford, C. M.; Dragovan, M.; Earle, L.; Glenn, J.; Naylor, B.; Nguyen, H. T.; Zmuidzinas, J.

2004-01-01

The combination of sensitive direct detectors and a cooled aperture promises orders of magnitude improvement in the sensitivity and survey time for far-infrared and submillimeter spectroscopy compared to existing or planned capabilities. Continuing advances in direct detector technology enable spectroscopy that approaches the background limit available only from space at these wavelengths. Because the spectral confusion limit is significantly lower than the more familiar spatial confusion limit encountered in imaging applications, spectroscopy can be carried out to comparable depth with a significantly smaller aperture. We are developing a novel waveguide-coupled grating spectrometer that disperses radiation into a wide instantaneous bandwidth with moderate resolution (R 1000) in a compact 2-dimensional format. A line survey instrument coupled to a modest cooled single aperture provides an attractive scientific application for spectroscopy with direct detectors. Using a suite of waveguide spectrometers, we can obtain complete coverage over the entire far-infrared and sub-millimeter. This concept requires no moving parts to modulate the optical signal. Such an instrument would be able to conduct a far-infrared line survey 10 6 times faster than planned capabilities, assuming existing detector technology. However, if historical improvements in bolometer sensitivity continue, so that photon-limited sensitivity is obtained, the integration time can be further reduced by 2 to 4 orders of magnitude, depending on wavelength. The line flux sensitivity would be comparable to ALMA, but at shorter wavelengths and with the continuous coverage needed to extract line fluxes for sources at unknown redshifts. For example, this capability would break the current spectroscopic bottleneck in the study of far-infrared galaxies, the recently discovered, rapidly evolving objects abundant at cosmological distances.

A mixture theory model of fluid and solute transport in the microvasculature of normal and malignant tissues. II: Factor sensitivity analysis, calibration, and validation.

PubMed

Schuff, M M; Gore, J P; Nauman, E A

2013-12-01

The treatment of cancerous tumors is dependent upon the delivery of therapeutics through the blood by means of the microcirculation. Differences in the vasculature of normal and malignant tissues have been recognized, but it is not fully understood how these differences affect transport and the applicability of existing mathematical models has been questioned at the microscale due to the complex rheology of blood and fluid exchange with the tissue. In addition to determining an appropriate set of governing equations it is necessary to specify appropriate model parameters based on physiological data. To this end, a two stage sensitivity analysis is described which makes it possible to determine the set of parameters most important to the model's calibration. In the first stage, the fluid flow equations are examined and a sensitivity analysis is used to evaluate the importance of 11 different model parameters. Of these, only four substantially influence the intravascular axial flow providing a tractable set that could be calibrated using red blood cell velocity data from the literature. The second stage also utilizes a sensitivity analysis to evaluate the importance of 14 model parameters on extravascular flux. Of these, six exhibit high sensitivity and are integrated into the model calibration using a response surface methodology and experimental intra- and extravascular accumulation data from the literature (Dreher et al. in J Natl Cancer Inst 98(5):335-344, 2006). The model exhibits good agreement with the experimental results for both the mean extravascular concentration and the penetration depth as a function of time for inert dextran over a wide range of molecular weights.

Inferring fault rheology from low-frequency earthquakes on the San Andreas

USGS Publications Warehouse

Beeler, Nicholas M.; Thomas, Amanda; Bürgmann, Roland; Shelly, David R.

2013-01-01

Families of recurring low-frequency earthquakes (LFEs) within nonvolcanic tremor (NVT) on the San Andreas fault in central California show strong sensitivity to shear stress induced by the daily tidal cycle. LFEs occur at all levels of the tidal shear stress and are in phase with the very small, ~400 Pa, stress amplitude. To quantitatively explain the correlation, we use a model from the existing literature that assumes the LFE sources are small, persistent regions that repeatedly fail during shear of a much larger scale, otherwise aseismically creeping fault zone. The LFE source patches see tectonic loading, creep of the surrounding fault which may be modulated by the tidal stress, and direct tidal loading. If the patches are small relative to the surrounding creeping fault then the stressing is dominated by fault creep, and if patch failure occurs at a threshold stress, then the resulting seismicity rate is proportional to the fault creep rate or fault zone strain rate. Using the seismicity rate as a proxy for strain rate and the tidal shear stress, we fit the data with possible fault rheologies that produce creep in laboratory experiments at temperatures of 400 to 600°C appropriate for the LFE source depth. The rheological properties of rock-forming minerals for dislocation creep and dislocation glide are not consistent with the observed fault creep because strong correlation between small stress perturbations and strain rate requires perturbation on the order of the ambient stress. The observed tidal modulation restricts ambient stress to be at most a few kilopascal, much lower than rock strength. A purely rate dependent friction is consistent with the observations only if the product of the friction rate dependence and effective normal stress is ~ 0.5 kPa. Extrapolating the friction rate strengthening dependence of phyllosilicates (talc) to depth would require the effective normal stress to be ~50 kPa, implying pore pressure is lithostatic. If the LFE source is on the order of tens of meters, as required by the model, rate-weakening friction rate dependence (e.g., olivine) at 400 to 600°C requires that the minimum effective pressure at the LFE source is ~ 2.5 MPa.

Nonlinear electrodynamics of high-temperature superconductors

NASA Astrophysics Data System (ADS)

Zutic, Igor

We investigate the effects of nonlinear electrodynamics in unconventional superconductors. These effects can serve as fingerprints to identify the symmetry of the superconducting pairing state and to provide information about the unknown pairing mechanism in High Temperature Superconductors (HTSC). In the Meissner regime, at low temperatures, a nonlinear magnetic response arises from the presence of lines on the Fermi surface where the superconducting energy gap is very small or zero. This can be used to perform "node spectroscopy", that is, as a sensitive bulk probe to locate the angular position of those lines. We first compute the nonlinear magnetic moment as a function of applied field and geometry, assuming d-wave pairing and anisotropic penetration depth, for realistic finite sample. Our novel, numerically implemented, perturbative procedure exploits the small ratio of the penetration depths to the sample size and substantially reduces the computational work required. We next generalize these considerations to other candidates for the energy gap and to perform node spectroscopy. In calculating the nonlinear supercurrent response, we include the effects of orthorhombic distortion and a-b plane anisotropy. Analytic results presented demonstrate a systematic way to experimentally distinguish order parameters of different symmetries, including cases with mixed symmetry (for example, d+s and s+id). We finally extend our findings to the case of low frequency harmonic magnetic field. The nonlinear magnetic response for various physical quantities generates higher harmonics of the frequency of the applied field. We discuss how examination of the field and angular dependences of these harmonics allows determination of the structure of the energy gap. We show how to distinguish nodes from small minima ("quasinodes"). Gaps with nodal lines give rise to universal power law field dependences for the nonlinear magnetic moment and torque. They both have separable temporal and angular dependences. In contrast, with gap functions which only have quasinodes, these quantities do not display power laws in the applied field, and their temporal and angular dependences are not separable. We discuss how to perform measurements so as to maximize the nonlinear signal, and how to determine the gap function symmetry.

Effect of wave-current interaction on wind-driven circulation in narrow, shallow embayments

USGS Publications Warehouse

Signell, Richard P.; Beardsley, Robert C.; Graber, H. C.; Capotondi, A.

1990-01-01

The effect of wind waves on the steady wind-driven circulation in a narrow, shallow bay is investigated with a two-dimensional (y, z) circulation model and the Grant and Madsen [1979] bottom-boundary layer model, which includes wave-current interaction. A constant wind stress is applied in the along-channel x direction to a channel with a constant cross-sectional profile h(y). The wind-induced flushing of shallow bays is shown to be sensitive to both the shape of the cross section and the effects of surface waves. The flushing increases with increasing , where h′ is the standard deviation of cross-channel depth and  is the mean depth. This is consistent with the findings of Hearn et al. [1987]. The flushing decreases, however, with the inclusion of surface wave effects which act to increase the bottom drag felt by the currents. Increasing effective bottom friction reduces the strength of the circulation, while the along-bay surface slope, bottom stress and the structure of current profiles remain nearly unchanged. An implication of the circulation dependence on wave-current interaction is that low-frequency oscillatory winds may drive a mean circulation when the wave field changes with wind direction.x

Laser-induced photo-thermal strain imaging

NASA Astrophysics Data System (ADS)

Choi, Changhoon; Ahn, Joongho; Jeon, Seungwan; Kim, Chulhong

2018-02-01

Vulnerable plaque is the one of the leading causes of cardiovascular disease occurrence. However, conventional intravascular imaging techniques suffer from difficulty in finding vulnerable plaque due to limitation such as lack of physiological information, imaging depth, and depth sensitivity. Therefore, new techniques are needed to help determine the vulnerability of plaque, Thermal strain imaging (TSI) is an imaging technique based on ultrasound (US) wave propagation speed that varies with temperature of medium. During temperature increase, strain occurs in the medium and its variation tendency is depending on the type of tissue, which makes it possible to use for tissue differentiation. Here, we demonstrate laser-induced photo-thermal strain imaging (pTSI) to differentiate tissue using an intravascular ultrasound (IVUS) catheter and a 1210-nm continuous-wave laser for heating lipids intensively. During heating, consecutive US images were obtained from a custom-made phantom made of porcine fat and gelatin. A cross correlation-based speckle-tracking algorithm was then applied to calculate the strain of US images. In the strain images, the positive strain produced in lipids (porcine fat) was clearly differentiated from water-bearing tissue (gelatin). This result shows that laser-induced pTSI could be a new method to distinguish lipids in the plaque and can help to differentiate vulnerability of plaque.

Optical polarimetry of KIC 8462852 in 2017 May-August

NASA Astrophysics Data System (ADS)

Steele, I. A.; Copperwheat, C. M.; Jermak, H. E.; Kennedy, G. M.; Lamb, G. P.

2018-01-01

We present optical polarimetry in the period of 2017 May-August of the enigmatic `dipping' star KIC 8462852. During that period, three ˜1 per cent photometric dips were reported by other observers. We measured the average absolute polarization of the source, and find no excess or unusual polarization compared to a nearby comparison star. We place tight upper limits on any change in the degree of polarization of the source between epochs in-dip and out-of-dip of <0.1 per cent (8500 Å) and <0.2 per cent (7050 Å and 5300 Å). How our limits are interpreted depends on the specific model being considered. If the whole stellar disc were covered by material with an optical depth of ˜0.01, then the fractional polarization introduced by this material must be less than 10-20 per cent. While our non-detection does not constrain the comet scenario, it predicts that even modest amounts of dust that have properties similar to Solar system comets may be detectable. We note that the sensitivity of our method scales with the depth of the dip. Should a future ˜20 per cent photometric dip be observed (as was previously detected by Kepler), our method would constrain any induced polarization associated with any occulting material to 0.5-1.0 per cent.

Determination of absorbed dose to water from a miniature kilovoltage x-ray source using a parallel-plate ionization chamber

NASA Astrophysics Data System (ADS)

Watson, Peter G. F.; Popovic, Marija; Seuntjens, Jan

2018-01-01

Electronic brachytherapy sources are widely accepted as alternatives to radionuclide-based systems. Yet, formal dosimetry standards for these devices to independently complement the dose protocol provided by the manufacturer are lacking. This article presents a formalism for calculating and independently verifying the absorbed dose to water from a kV x-ray source (The INTRABEAM System) measured in a water phantom with an ionization chamber calibrated in terms of air-kerma. This formalism uses a Monte Carlo (MC) calculated chamber conversion factor, CQ , to convert air-kerma in a reference beam to absorbed dose to water in the measurement beam. In this work CQ was determined for a PTW 34013 parallel-plate ionization chamber. Our results show that CQ was sensitive to the chamber plate separation tolerance, with differences of up to 15%. CQ was also found to have a depth dependence which varied with chamber plate separation (0 to 10% variation for the smallest and largest cavity height, over 3 to 30 mm depth). However for all chamber dimensions investigated, CQ was found to be significantly larger than the manufacturer reported value, suggesting that the manufacturer recommended method of dose calculation could be underestimating the dose to water.

Bench-level characterization of a CMOS standard-cell D-latch using alpha-particle sensitive test circuits

NASA Technical Reports Server (NTRS)

Blaes, B. R.; Soli, G. A.; Buehler, M. G.

1991-01-01

A methodology is described for predicting the SEU susceptibility of a standard-cell D-latch using an alpha-particle sensitive SRAM, SPICE critical charge simulation results, and alpha-particle interaction physics. Measurements were made on a 1.6-micron n-well CMOS 4-kb test SRAM irradiated with an Am-241 alpha-particle source. A collection depth of 6.09 micron was determined using these results and TRIM computer code. Using this collection depth and SPICE derived critical charge results on the latch design, an LET threshold of 34 MeV sq cm/mg was predicted. Heavy ion tests were then performed on the latch and an LET threshold of 41 MeV sq cm/mg was determined.

Measurement of the Muon Production Depths at the Pierre Auger Observatory

DOE PAGES

Collica, Laura

2016-09-08

The muon content of extensive air showers is an observable sensitive to the primary composition and to the hadronic interaction properties. The Pierre Auger Observatory uses water-Cherenkov detectors to measure particle densities at the ground and therefore is sensitive to the muon content of air showers. We present here a method which allows us to estimate the muon production depths by exploiting the measurement of the muon arrival times at the ground recorded with the Surface Detector of the Pierre Auger Observatory. The analysis is performed in a large range of zenith angles, thanks to the capability of estimating and subtracting the electromagnetic component, and for energies betweenmore » $$10^{19.2}$$ and $$10^{20}$$ eV.« less

Energy-Sensitive Ion- and Cathode-Luminescent Radiation-Beam Monitors Based on Multilayer Thin-Film Designs.

PubMed

Gil-Rostra, Jorge; Ferrer, Francisco J; Espinós, Juan Pedro; González-Elipe, Agustín R; Yubero, Francisco

2017-05-17

A multilayer luminescent design concept is presented to develop energy-sensitive radiation-beam monitors on the basis of colorimetric analysis. Each luminescent layer within the stack consists of rare-earth-doped transparent oxides of optical quality and a characteristic luminescent emission under excitation with electron or ion beams. For a given type of particle beam (electron, protons, α particles, etc.), its penetration depth and therefore its energy loss at a particular buried layer within the multilayer stack depend on the energy of the initial beam. The intensity of the luminescent response of each layer is proportional to the energy deposited by the radiation beam within the layer, so characteristic color emission will be achieved if different phosphors are considered in the layers of the luminescent stack. Phosphor doping, emission efficiency, layer thickness, and multilayer structure design are key parameters relevant to achieving a broad colorimetric response. Two case examples are designed and fabricated to illustrate the capabilities of these new types of detector to evaluate the kinetic energy of either electron beams of a few kilo-electron volts or α particles of a few mega-electron volts.

Frictional Properties of the Nankai Trough Accretionary Mud Samples Collected from 1000-3000 mbsf at IODP Site C0002

NASA Astrophysics Data System (ADS)

Kanagawa, K.; Hoshino, K.; Abe, K.; Sawai, M.

2016-12-01

We conducted triaxial friction experiments on the Nankai Trough accretionary mud samples collected from 1000-3000 mbsf (meters below seafloor) at IODP Site C0002 off Kii Peninsula, at confining pressures of 44-83 MPa, pore water pressures of 32-50 MPa and temperatures of 51-98°C equivalent to their in situ conditions, and at axial displacement rates changed stepwise among 0.1, 1 and 10 µm/s, in order to investigate their frictional properties changing with depth. XRD analyses of tested mud samples revealed that the content of total clay minerals tends to increase with depth from 30 to 60 wt%, while the smectite fraction in total clay minerals decreases with depth from 0.75 to 0.3. Because the temperature at 3000 mbsf reaches 100°C, this decrease in smectite fraction with depth is likely due to the progress of smectite dehydration with increasing temperature. Friction experiments on tested mud samples revealed that the steady-state friction coefficient at an axial displacement rate of 1 µm/s tends to decrease with depth from 0.5 to 0.3, according to the increasing content of total clay minerals with depth. Velocity dependence of steady-state friction also tends to decrease with depth, likely reflecting a decrease in smectite fraction in total clay minerals. Although velocity dependence of steady-state friction is mostly positive at depths down to 3000 mbsf, it is locally neutral or negative at depths deeper than 2000 mbsf, implying that faulting at these depths is conditionally stable and possibly accompanied by slow slip events.

Cloud and aerosol optical depths

NASA Technical Reports Server (NTRS)

Pueschel, R. F.; Russell, P. B.; Ackerman, Thomas P.; Colburn, D. C.; Wrigley, R. C.; Spanner, M. A.; Livingston, J. M.

1988-01-01

An airborne Sun photometer was used to measure optical depths in clear atmospheres between the appearances of broken stratus clouds, and the optical depths in the vicinity of smokes. Results show that (human) activities can alter the chemical and optical properties of background atmospheres to affect their spectral optical depths. Effects of water vapor adsorption on aerosol optical depths are apparent, based on data of the water vapor absorption band centered around 940 nm. Smoke optical depths show increases above the background atmosphere by up to two orders of magnitude. When the total optical depths measured through clouds were corrected for molecular scattering and gaseous absorption by subtracting the total optical depths measured through the background atmosphere, the resultant values are lower than those of the background aerosol at short wavelengths. The spectral dependence of these cloud optical depths is neutral, however, in contrast to that of the background aerosol or the molecular atmosphere.

Natural-Scene Statistics Predict How the Figure–Ground Cue of Convexity Affects Human Depth Perception

PubMed Central

Fowlkes, Charless C.; Banks, Martin S.

2010-01-01

The shape of the contour separating two regions strongly influences judgments of which region is “figure” and which is “ground.” Convexity and other figure–ground cues are generally assumed to indicate only which region is nearer, but nothing about how much the regions are separated in depth. To determine the depth information conveyed by convexity, we examined natural scenes and found that depth steps across surfaces with convex silhouettes are likely to be larger than steps across surfaces with concave silhouettes. In a psychophysical experiment, we found that humans exploit this correlation. For a given binocular disparity, observers perceived more depth when the near surface's silhouette was convex rather than concave. We estimated the depth distributions observers used in making those judgments: they were similar to the natural-scene distributions. Our findings show that convexity should be reclassified as a metric depth cue. They also suggest that the dichotomy between metric and nonmetric depth cues is false and that the depth information provided many cues should be evaluated with respect to natural-scene statistics. Finally, the findings provide an explanation for why figure–ground cues modulate the responses of disparity-sensitive cells in visual cortex. PMID:20505093

Magnetic field penetration in niobium- and vanadium-based Josephson junctions

NASA Astrophysics Data System (ADS)

Cucolo, A. M.; Pace, S.; Vaglio, R.; di Chiara, A.; Peluso, G.; Russo, M.

1983-02-01

Measurements on the temperature dependence of the magnetic field penetration in Nb-NbxOy-Pb and V-VxOy-Pb Josephson junctions have been performed. Results on the zero-temperature penetration depth in niobium films are far above the bulk values although consistent with other measurements on junctions reported in the literature. For vanadium junctions anomalously large penetration depth values are obtained at low temperatures. Nevertheless, the temperature dependence is in reasonable agreement with the local dirty limit model.

SU-G-201-08: Energy Response of Thermoluminescent Microcube Dosimeters in Water for Kilovoltage X-Ray Beams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Di Maso, L; Lawless, M; Culberson, W

Purpose: To characterize the energy dependence for TLD-100 microcubes in water at kilovoltage energies. Methods: TLD-100 microcubes with dimensions of (1 × 1 × 1) mm{sup 3} were irradiated with kilovoltage x-rays in a custom-built thin-window liquid water phantom. The TLD-100 microcubes were held in Virtual Water™ probes and aligned at a 2 cm depth in water. Irradiations were performed using the M-series x-ray beams of energies ranging from 50-250 kVp and normalized to a {sup 60}Co beam located at the UWADCL. Simulations using the EGSnrc Monte Carlo Code System were performed to model the x-ray beams, the {sup 60}Comore » beam, the water phantom and the dosimeters in the phantom. The egs-chamber user code was used to tally the dose to the TLDs and the dose to water. The measurements and calculations were used to determine the intrinsic energy dependence, absorbed-dose energy dependence, and absorbed-dose sensitivity. These values were compared to TLD-100 chips with dimensions of (3.2 × 0.9 × 0.9) mm{sup 3}. Results: The measured TLD-100 microcube response per dose to water among all investigated x-ray energies had a maximum percent difference of 61% relative to {sup 60}Co. The simulated ratio of dose to water to the dose to TLD had a maximum percent difference of 29% relative to {sup 60}Co. The ratio of dose to TLD to the TLD output had a maximum percent difference of 13% relative to {sup 60}Co. The maximum percent difference for the absorbed-dose sensitivity was 15% more than the used value of 1.41. Conclusion: These results confirm that differences in beam quality have a significant effect on TLD response when irradiated in water. These results also indicated a difference in TLD-100 response between microcube and chip geometries. The intrinsic energy dependence and the absorbed-dose energy dependence deviated up to 10% between TLD-100 microcubes and chips.« less

Utility of bromide and heat tracers for aquifer characterization affected by highly transient flow conditions

NASA Astrophysics Data System (ADS)

Ma, Rui; Zheng, Chunmiao; Zachara, John M.; Tonkin, Matthew

2012-08-01

A tracer test using both bromide and heat tracers conducted at the Integrated Field Research Challenge site in Hanford 300 Area (300A), Washington, provided an instrument for evaluating the utility of bromide and heat tracers for aquifer characterization. The bromide tracer data were critical to improving the calibration of the flow model complicated by the highly dynamic nature of the flow field. However, most bromide concentrations were obtained from fully screened observation wells, lacking depth-specific resolution for vertical characterization. On the other hand, depth-specific temperature data were relatively simple and inexpensive to acquire. However, temperature-driven fluid density effects influenced heat plume movement. Moreover, the temperature data contained "noise" caused by heating during fluid injection and sampling events. Using the hydraulic conductivity distribution obtained from the calibration of the bromide transport model, the temperature depth profiles and arrival times of temperature peaks simulated by the heat transport model were in reasonable agreement with observations. This suggested that heat can be used as a cost-effective proxy for solute tracers for calibration of the hydraulic conductivity distribution, especially in the vertical direction. However, a heat tracer test must be carefully designed and executed to minimize fluid density effects and sources of noise in temperature data. A sensitivity analysis also revealed that heat transport was most sensitive to hydraulic conductivity and porosity, less sensitive to thermal distribution factor, and least sensitive to thermal dispersion and heat conduction. This indicated that the hydraulic conductivity remains the primary calibration parameter for heat transport.

Utility of Bromide and Heat Tracers for Aquifer Characterization Affected by Highly Transient Flow Conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma, Rui; Zheng, Chunmiao; Zachara, John M.

A tracer test using both bromide and heat tracers conducted at the Integrated Field Research Challenge site in Hanford 300 Area (300A), Washington, provided an instrument for evaluating the utility of bromide and heat tracers for aquifer characterization. The bromide tracer data were critical to improving the calibration of the flow model complicated by the highly dynamic nature of the flow field. However, most bromide concentrations were obtained from fully screened observation wells, lacking depth-specific resolution for vertical characterization. On the other hand, depth-specific temperature data were relatively simple and inexpensive to acquire. However, temperature-driven fluid density effects influenced heatmore » plume movement. Moreover, the temperature data contained “noise” caused by heating during fluid injection and sampling events. Using the hydraulic conductivity distribution obtained from the calibration of the bromide transport model, the temperature depth profiles and arrival times of temperature peaks simulated by the heat transport model were in reasonable agreement with observations. This suggested that heat can be used as a cost-effective proxy for solute tracers for calibration of the hydraulic conductivity distribution, especially in the vertical direction. However, a heat tracer test must be carefully designed and executed to minimize fluid density effects and sources of noise in temperature data. A sensitivity analysis also revealed that heat transport was most sensitive to hydraulic conductivity and porosity, less sensitive to thermal distribution factor, and least sensitive to thermal dispersion and heat conduction. This indicated that the hydraulic conductivity remains the primary calibration parameter for heat transport.« less

Depth-resolved dual-beamlet vibrometry based on Fourier domain low coherence interferometry

PubMed Central

Choudhury, Niloy; Chen, Fangyi; Wang, Ruikang K.; Jacques, Steven L.; Nuttall, Alfred L.

2013-01-01

Abstract. We present an optical vibrometer based on delay-encoded, dual-beamlet phase-sensitive Fourier domain interferometric system to provide depth-resolved subnanometer scale vibration information from scattering biological specimens. System characterization, calibration, and preliminary vibrometry with biological specimens were performed. The proposed system has the potential to provide both amplitude and direction of vibration of tissue microstructures on a single two-dimensional plane. PMID:23455961

Methane rising from the Deep: Hydrates, Bubbles, Oil Spills, and Global Warming

NASA Astrophysics Data System (ADS)

Leifer, I.; Rehder, G. J.; Solomon, E. A.; Kastner, M.; Asper, V. L.; Joye, S. B.

2011-12-01

Elevated methane concentrations in near-surface waters and the atmosphere have been reported for seepage from depths of nearly 1 km at the Gulf of Mexico hydrate observatory (MC118), suggesting that for some methane sources, deepsea methane is not trapped and can contribute to atmospheric greenhouse gas budgets. Ebullition is key with important sensitivity to the formation of hydrate skins and oil coatings, high-pressure solubility, bubble size and bubble plume processes. Bubble ROV tracking studies showed survival to near thermocline depths. Studies with a numerical bubble propagation model demonstrated that consideration of structure I hydrate skins transported most methane only to mid-water column depths. Instead, consideration of structure II hydrates, which are stable to far shallower depths and appropriate for natural gas mixtures, allows bubbles to survive to far shallower depths. Moreover, model predictions of vertical methane and alkane profiles and bubble size evolution were in better agreement with observations after consideration of structure II hydrate properties as well as an improved implementation of plume properties, such as currents. These results demonstrate the importance of correctly incorporating bubble hydrate processes in efforts to predict the impact of deepsea seepage as well as to understand the fate of bubble-transported oil and methane from deepsea pipeline leaks and well blowouts. Application to the DWH spill demonstrated the importance of deepsea processes to the fate of spilled subsurface oil. Because several of these parameters vary temporally (bubble flux, currents, temperature), sensitivity studies indicate the importance of real-time monitoring data.

Biometric parameters in different stages of primary angle closure using low-coherence interferometry.

PubMed

Yazdani, Shahin; Akbarian, Shadi; Pakravan, Mohammad; Doozandeh, Azadeh; Afrouzifar, Mohsen

2015-03-01

To compare ocular biometric parameters using low-coherence interferometry among siblings affected with different degrees of primary angle closure (PAC). In this cross-sectional comparative study, a total of 170 eyes of 86 siblings from 47 families underwent low-coherence interferometry (LenStar 900; Haag-Streit, Koeniz, Switzerland) to determine central corneal thickness, anterior chamber depth (ACD), aqueous depth (AD), lens thickness (LT), vitreous depth, and axial length (AL). Regression coefficients were applied to show the trend of the measured variables in different stages of angle closure. To evaluate the discriminative power of the parameters, receiver operating characteristic curves were used. Best cutoff points were selected based on the Youden index. Sensitivity, specificity, positive and negative predicative values, positive and negative likelihood ratios, and diagnostic accuracy were determined for each variable. All biometric parameters changed significantly from normal eyes to PAC suspects, PAC, and PAC glaucoma; there was a significant stepwise decrease in central corneal thickness, ACD, AD, vitreous depth, and AL, and an increase in LT and LT/AL. Anterior chamber depth and AD had the best diagnostic power for detecting angle closure; best levels of sensitivity and specificity were obtained with cutoff values of 3.11 mm for ACD and 2.57 mm for AD. Biometric parameters measured by low-coherence interferometry demonstrated a significant and stepwise change among eyes affected with various degrees of angle closure. Although the current classification scheme for angle closure is based on anatomical features, it has excellent correlation with biometric parameters.

Underwater linear polarization: physical limitations to biological functions

PubMed Central

Shashar, Nadav; Johnsen, Sönke; Lerner, Amit; Sabbah, Shai; Chiao, Chuan-Chin; Mäthger, Lydia M.; Hanlon, Roger T.

2011-01-01

Polarization sensitivity is documented in a range of marine animals. The variety of tasks for which animals can use this sensitivity, and the range over which they do so, are confined by the visual systems of these animals and by the propagation of the polarization information in the aquatic environment. We examine the environmental physical constraints in an attempt to reveal the depth, range and other limitations to the use of polarization sensitivity by marine animals. In clear oceanic waters, navigation that is based on the polarization pattern of the sky appears to be limited to shallow waters, while solar-based navigation is possible down to 200–400 m. When combined with intensity difference, polarization sensitivity allows an increase in target detection range by 70–80% with an upper limit of 15 m for large-eyed animals. This distance will be significantly smaller for small animals, such as plankton, and in turbid waters. Polarization-contrast detection, which is relevant to object detection and communication, is strongly affected by water conditions and in clear waters its range limit may reach 15 m as well. We show that polarization sensitivity may also serve for target distance estimation, when examining point source bioluminescent objects in the photic mesopelagic depth range. PMID:21282168

Improving statistical inference on pathogen densities estimated by quantitative molecular methods: malaria gametocytaemia as a case study.

PubMed

Walker, Martin; Basáñez, María-Gloria; Ouédraogo, André Lin; Hermsen, Cornelus; Bousema, Teun; Churcher, Thomas S

2015-01-16

Quantitative molecular methods (QMMs) such as quantitative real-time polymerase chain reaction (q-PCR), reverse-transcriptase PCR (qRT-PCR) and quantitative nucleic acid sequence-based amplification (QT-NASBA) are increasingly used to estimate pathogen density in a variety of clinical and epidemiological contexts. These methods are often classified as semi-quantitative, yet estimates of reliability or sensitivity are seldom reported. Here, a statistical framework is developed for assessing the reliability (uncertainty) of pathogen densities estimated using QMMs and the associated diagnostic sensitivity. The method is illustrated with quantification of Plasmodium falciparum gametocytaemia by QT-NASBA. The reliability of pathogen (e.g. gametocyte) densities, and the accompanying diagnostic sensitivity, estimated by two contrasting statistical calibration techniques, are compared; a traditional method and a mixed model Bayesian approach. The latter accounts for statistical dependence of QMM assays run under identical laboratory protocols and permits structural modelling of experimental measurements, allowing precision to vary with pathogen density. Traditional calibration cannot account for inter-assay variability arising from imperfect QMMs and generates estimates of pathogen density that have poor reliability, are variable among assays and inaccurately reflect diagnostic sensitivity. The Bayesian mixed model approach assimilates information from replica QMM assays, improving reliability and inter-assay homogeneity, providing an accurate appraisal of quantitative and diagnostic performance. Bayesian mixed model statistical calibration supersedes traditional techniques in the context of QMM-derived estimates of pathogen density, offering the potential to improve substantially the depth and quality of clinical and epidemiological inference for a wide variety of pathogens.

Improving calibration and validation of cosmic-ray neutron sensors in the light of spatial sensitivity

NASA Astrophysics Data System (ADS)

Schrön, Martin; Köhli, Markus; Scheiffele, Lena; Iwema, Joost; Bogena, Heye R.; Lv, Ling; Martini, Edoardo; Baroni, Gabriele; Rosolem, Rafael; Weimar, Jannis; Mai, Juliane; Cuntz, Matthias; Rebmann, Corinna; Oswald, Sascha E.; Dietrich, Peter; Schmidt, Ulrich; Zacharias, Steffen

2017-10-01

In the last few years the method of cosmic-ray neutron sensing (CRNS) has gained popularity among hydrologists, physicists, and land-surface modelers. The sensor provides continuous soil moisture data, averaged over several hectares and tens of decimeters in depth. However, the signal still may contain unidentified features of hydrological processes, and many calibration datasets are often required in order to find reliable relations between neutron intensity and water dynamics. Recent insights into environmental neutrons accurately described the spatial sensitivity of the sensor and thus allowed one to quantify the contribution of individual sample locations to the CRNS signal. Consequently, data points of calibration and validation datasets are suggested to be averaged using a more physically based weighting approach. In this work, a revised sensitivity function is used to calculate weighted averages of point data. The function is different from the simple exponential convention by the extraordinary sensitivity to the first few meters around the probe, and by dependencies on air pressure, air humidity, soil moisture, and vegetation. The approach is extensively tested at six distinct monitoring sites: two sites with multiple calibration datasets and four sites with continuous time series datasets. In all cases, the revised averaging method improved the performance of the CRNS products. The revised approach further helped to reveal hidden hydrological processes which otherwise remained unexplained in the data or were lost in the process of overcalibration. The presented weighting approach increases the overall accuracy of CRNS products and will have an impact on all their applications in agriculture, hydrology, and modeling.

Using DAS for reflection seismology - lessons learned from three field studies

NASA Astrophysics Data System (ADS)

Freifeld, B. M.; Dou, S.; Ajo Franklin, J. B.; Robertson, M.; Wood, T.; Daley, T. M.; White, D. J.; Worth, K.; Pevzner, R.; Yavuz, S.; dos Santos Maia Correa, J.; McDonald, S.

2017-12-01

Distributed acoustic sensing (DAS) has rapidly gained recognition for its potential for seismic imaging. For surface reflection seismology, the wide spatial aperture afforded by DAS is a primary motivation for its application, however the lower SNR of DAS has proven to be a significant impediment to acquiring data that can replace conventional receiver arrays. A further limitation of DAS cables is that the strain-dependent response is insensitive to acoustic energy which arrives orthogonal to the cable axis, reducing its effectiveness at seeing energy reflected from the deep subsurface. To enhance the sensitivity of DAS cables for reflection seismology, we have trialed at three field sites DAS cables with helical construction in which there is a significant component of optical fiber that is coincident with arriving broadside energy. We have installed helically wound DAS cables at the PTRC Aquistore Project in Saskatchewan, Canada and the CO2CRC Otway Project in Nirranda South, Victoria, Australia in shallow trenches. For the ADM Intelligent Monitoring Systems Project in Decatur, Illinois, USA we used a horizontal directional drilling method to install DAS cables at a depth that is greater than can be achieved using trenched installation. At the Otway and ADM sites we operated surface orbital vibrators (SOVs) at fixed locations to enhance sensitivity by stacking large numbers of sweeps. We present survey results from the three sites. Analysis of both vibroseis survey and SOV results show that the helical cable design achieves its primary objective of improving sensitivity to reflected energy, with further gains needed to achieve the sensitivity of conventional geophones.

Relative sensitivity of depth discrimination for ankle inversion and plantar flexion movements.

PubMed

Black, Georgia; Waddington, Gordon; Adams, Roger

2014-02-01

25 participants (20 women, 5 men) were tested for sensitivity in discrimination between sets of six movements centered on 8 degrees, 11 degrees, and 14 degrees, and separated by 0.3 degrees. Both inversion and plantar flexion movements were tested. Discrimination of the extent of inversion movement was observed to decline linearly with increasing depth; however, for plantar flexion, the discrimination function for movement extent was found to be non-linear. The relatively better discrimination of plantar flexion movements than inversion movements at around 11 degrees from horizontal is interpreted as an effect arising from differential amounts of practice through use, because this position is associated with the plantar flexion movement made in normal walking. The fact that plantar flexion movements are discriminated better than inversion at one region but not others argues against accounts of superior proprioceptive sensitivity for plantar flexion compared to inversion that are based on general properties of plantar flexion such as the number of muscle fibres on stretch.

A microelectromechanical systems (MEMS) force-displacement transducer for sub-5 nm nanoindentation and adhesion measurements

NASA Astrophysics Data System (ADS)

Zhang, Youfeng; Oh, Yunje; Stauffer, Douglas; Polycarpou, Andreas A.

2018-04-01

We present a highly sensitive force-displacement transducer capable of performing ultra-shallow nanoindentation and adhesion measurements. The transducer utilizes electrostatic actuation and capacitive sensing combined with microelectromechanical fabrication technologies. Air indentation experiments report a root-mean-square (RMS) force resolution of 1.8 nN and an RMS displacement resolution of 0.019 nm. Nanoindentation experiments on a standard fused quartz sample report a practical RMS force resolution of 5 nN and an RMS displacement resolution of 0.05 nm at sub-10 nm indentation depths, indicating that the system has a very low system noise for indentation experiments. The high sensitivity and low noise enables the transducer to obtain high-resolution nanoindentation data at sub-5 nm contact depths. The sensitive force transducer is used to successfully perform nanoindentation measurements on a 14 nm thin film. Adhesion measurements were also performed, clearly capturing the pull-on and pull-off forces during approach and separation of two contacting surfaces.

Linking petrology and seismology of the southwest Greenland lithosphere

NASA Astrophysics Data System (ADS)

Lesher, C. E.; Vestergaard, C.; Brown, E.; Schutt, D.

2015-12-01

Mantle xenoliths from late-Proterozoic diamond-bearing kimberlitic dikes in the Kangerlussuaq, Sarfartoq and Maniitsoq areas of southwestern Greenland provide constraints on the composition and thermal state of lithospheric mantle beneath Greenland to depths of ~200 km [1]. Similarly, surface wave tomography studies carried out as part of the GLATIS project use a range of Rayleigh wave periods sensitive to structures at a similar depth interval within southwestern Greenland lithospheric mantle [2]. Here we link petrologic and seismologic constraints on the mantle lithosphere beneath Greenland utilizing methods of [3] that show that inferred chemical and mineralogical stratification inferred from petrology, showing mantle peridotite transitioning from garnet-free harzburgite to garnet lherzolite between ~70 and 180 km, cannot readily be resolved with fundamental mode Rayleigh waves. On the other hand, comparing phase velocities predicted from xenolith compositions, mineralogy and last equilibration temperatures and pressures, defining the continental geotherm during late-Proterozoic time, with those for the present-day mantle lithosphere suggest significant cooling of the cratonic mantle to a modern geotherm characterized by a heat flux of 30 mW/m2 and average crustal heat production of 0.3 mW/m3 [4]. These preliminary findings point to the weak dependence of shear wave velocities on mantle peridotite composition and mineralogy, and further illustrate its strong temperature dependence. Comparison of ancient and modern continental geotherms made possible by combining petrologic and seismological data, as shown here for southwest Greenland, provide additional constraints on secular cooling of cratonic regions linked to large-scale tectonic processes. [1] Bizzarro et al., 2003, CMP, 146; Sand et al., Lithos, 112. [2] Darbyshire et al., 2004, GJI, 158. [3] Schutt and Lesher, 2006, JGR, 111. [4] Meirerbachtol et al., 2015, JGR/ES, 120.

Microwave response of high transition temperature superconducting thin films

NASA Technical Reports Server (NTRS)

Miranda, Felix Antonio

1991-01-01

We have studied the microwave response of YBa2Cu3O(7 - delta), Bi-Sr-Ca-Cu-O, and Tl-Ba-Ca-Cu-O high transition temperature superconducting (HTS) thin films by performing power transmission measurements. These measurements were carried out in the temperature range of 300 K to 20 K and at frequencies within the range of 30 to 40 GHz. Through these measurements we have determined the magnetic penetration depth (lambda), the complex conductivity (sigma(sup *) = sigma(sub 1) - j sigma(sub 2)) and the surface resistance (R(sub s)). An estimate of the intrinsic penetration depth (lambda approx. 121 nm) for the YBa2Cu3O(7 - delta) HTS has been obtained from the film thickness dependence of lambda. This value compares favorably with the best values reported so far (approx. 140 nm) in single crystals and high quality c-axis oriented thin films. Furthermore, it was observed that our technique is sensitive to the intrinsic anisotropy of lambda in this superconductor. Values of lambda are also reported for Bi-based and Tl-based thin films. We observed that for the three types of superconductors, both sigma(sub 1) and sigma(sub 2) increased when cooling the films below their transition temperature. The measured R(sub s) are in good agreement with other R(sub S) values obtained using resonant activity techniques if we assume a quadratic frequency dependence. Our analysis shows that, of the three types of HTS films studied, the YBa2Cu3O(7 - delta) thin film, deposited by laser ablation and off-axis magnetron sputtering are the most promising for microwave applications.

Cosmogenic nuclide budgeting of floodplain sediment transfer

NASA Astrophysics Data System (ADS)

Wittmann, H.; von Blanckenburg, F.

2009-08-01

Cosmogenic nuclides produced in quartz may either decay or accumulate while sediment is moved through a river basin. A change in nuclide concentration resulting from storage in a floodplain is potentially important in large drainage basins in which sediment is prone to repeated burial and remobilization as a river migrates through its floodplain. We have modeled depth- and time-dependent cosmogenic nuclide concentration changes for 10Be, 26Al, and 14C during sediment storage and mixing in various active floodplain settings ranging from confined, shallow rivers with small floodplains to foreland-basin scale floodplains traversed by deep rivers. Floodplain storage time, estimated from channel migration rates, ranges from 0.4 kyr for the Beni River basin (Bolivia) to 7 kyr for the Amazon River basin, while floodplain storage depth, estimated from channel depth, ranges from 1 to 25 m. For all modeled active floodplain settings, the long-lived nuclides 10Be and 26Al show neither significant increase in nuclide concentration from irradiation nor decrease from decay. We predict a hypothetical response time after which changes in 10Be or 26Al concentrations become analytically resolvable. This interval ranges from 0.07 to 2 Myr and exceeds in all cases the typical residence time of sediment in a floodplain. Due to the much shorter half life of 14C, nuclide concentrations modeled for the in situ-produced variety of this nuclide are, however, sensitive to floodplain storage on residence times of < 20 kyr. The cosmogenic nuclide composition of old deposits in currently inactive floodplains that have been isolated for periods of millions of years from the river that once deposited them is predicted to either increase or decrease in 10Be and 26Al concentration, depending on the depositional depth. These conditions can be evaluated using the 26Al/ 10Be ratio that readily discloses the depth and duration of storage. We illustrate these models with examples from the Amazon basin. As predicted, modern bedload collected from an Amazon tributary, the Bolivian Beni River, shows no systematic change in nuclide concentration as sediment is moved through 500 km of floodplain by river meandering. In contrast, in the central Amazon floodplain currently untouched by the modern river system, low 26Al/ 10Be ratios account for minimum burial depths of 5 to 10 m for a duration of > 5 Myr. The important result of this analysis is that in all likely cases of active floodplains, cosmogenic 10Be and 26Al concentrations remain virtually unchanged over the interval sediment usually spends in the basin. Thus, spatially-averaged denudation rates of the sediment-producing area can be inferred throughout the entire basin, provided that nuclide production rates are scaled for the altitudes of the sediment-producing area only, because floodplain storage does not modify nuclide concentrations introduced from the sediment source area.

Examining indirect effects of lake trout recovery

EPA Science Inventory

With the recovery of lake trout populations in Lake Superior, there are indications of decreased forage fish abundance and density-dependence in lake trout. In Lake Superior, lean lake trout historically occupied depths < 60 m, and siscowet lake trout occupied depths > 60 m...

Investigation of Atmospheric Effects on Retrieval of Sun-Induced Fluorescence Using Hyperspectral Imagery.

PubMed

Ni, Zhuoya; Liu, Zhigang; Li, Zhao-Liang; Nerry, Françoise; Huo, Hongyuan; Sun, Rui; Yang, Peiqi; Zhang, Weiwei

2016-04-06

Significant research progress has recently been made in estimating fluorescence in the oxygen absorption bands, however, quantitative retrieval of fluorescence data is still affected by factors such as atmospheric effects. In this paper, top-of-atmosphere (TOA) radiance is generated by the MODTRAN 4 and SCOPE models. Based on simulated data, sensitivity analysis is conducted to assess the sensitivities of four indicators-depth_absorption_band, depth_nofs-depth_withfs, radiance and Fs/radiance-to atmospheric parameters (sun zenith angle (SZA), sensor height, elevation, visibility (VIS) and water content) in the oxygen absorption bands. The results indicate that the SZA and sensor height are the most sensitive parameters and that variations in these two parameters result in large variations calculated as the variation value/the base value in the oxygen absorption depth in the O₂-A and O₂-B bands (111.4% and 77.1% in the O₂-A band; and 27.5% and 32.6% in the O₂-B band, respectively). A comparison of fluorescence retrieval using three methods (Damm method, Braun method and DOAS) and SCOPE Fs indicates that the Damm method yields good results and that atmospheric correction can improve the accuracy of fluorescence retrieval. Damm method is the improved 3FLD method but considering atmospheric effects. Finally, hyperspectral airborne images combined with other parameters (SZA, VIS and water content) are exploited to estimate fluorescence using the Damm method and 3FLD method. The retrieval fluorescence is compared with the field measured fluorescence, yielding good results (R² = 0.91 for Damm vs. SCOPE SIF; R² = 0.65 for 3FLD vs. SCOPE SIF). Five types of vegetation, including ailanthus, elm, mountain peach, willow and Chinese ash, exhibit consistent associations between the retrieved fluorescence and field measured fluorescence.

Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data.

PubMed

Yao, Ruen; Zhang, Cheng; Yu, Tingting; Li, Niu; Hu, Xuyun; Wang, Xiumin; Wang, Jian; Shen, Yiping

2017-01-01

Whole exome sequencing (WES) has been widely accepted as a robust and cost-effective approach for clinical genetic testing of small sequence variants. Detection of copy number variants (CNV) within WES data have become possible through the development of various algorithms and software programs that utilize read-depth as the main information. The aim of this study was to evaluate three commonly used, WES read-depth based CNV detection programs using high-resolution chromosomal microarray analysis (CMA) as a standard. Paired CMA and WES data were acquired for 45 samples. A total of 219 CNVs (size ranged from 2.3 kb - 35 mb) identified on three CMA platforms (Affymetrix, Agilent and Illumina) were used as standards. CNVs were called from WES data using XHMM, CoNIFER, and CNVnator with modified settings. All three software packages detected an elevated proportion of small variants (< 20 kb) compared to CMA. XHMM and CoNIFER had poor detection sensitivity (22.2 and 14.6%), which correlated with the number of capturing probes involved. CNVnator detected most variants and had better sensitivity (87.7%); however, suffered from an overwhelming detection of small CNVs below 20 kb, which required further confirmation. Size estimation of variants was exaggerated by CNVnator and understated by XHMM and CoNIFER. Low concordances of CNV, detected by three different read-depth based programs, indicate the immature status of WES-based CNV detection. Low sensitivity and uncertain specificity of WES-based CNV detection in comparison with CMA based CNV detection suggests that CMA will continue to play an important role in detecting clinical grade CNV in the NGS era, which is largely based on WES.

Investigation of Atmospheric Effects on Retrieval of Sun-Induced Fluorescence Using Hyperspectral Imagery

PubMed Central

Ni, Zhuoya; Liu, Zhigang; Li, Zhao-Liang; Nerry, Françoise; Huo, Hongyuan; Sun, Rui; Yang, Peiqi; Zhang, Weiwei

2016-01-01

Significant research progress has recently been made in estimating fluorescence in the oxygen absorption bands, however, quantitative retrieval of fluorescence data is still affected by factors such as atmospheric effects. In this paper, top-of-atmosphere (TOA) radiance is generated by the MODTRAN 4 and SCOPE models. Based on simulated data, sensitivity analysis is conducted to assess the sensitivities of four indicators—depth_absorption_band, depth_nofs-depth_withfs, radiance and Fs/radiance—to atmospheric parameters (sun zenith angle (SZA), sensor height, elevation, visibility (VIS) and water content) in the oxygen absorption bands. The results indicate that the SZA and sensor height are the most sensitive parameters and that variations in these two parameters result in large variations calculated as the variation value/the base value in the oxygen absorption depth in the O2-A and O2-B bands (111.4% and 77.1% in the O2-A band; and 27.5% and 32.6% in the O2-B band, respectively). A comparison of fluorescence retrieval using three methods (Damm method, Braun method and DOAS) and SCOPE Fs indicates that the Damm method yields good results and that atmospheric correction can improve the accuracy of fluorescence retrieval. Damm method is the improved 3FLD method but considering atmospheric effects. Finally, hyperspectral airborne images combined with other parameters (SZA, VIS and water content) are exploited to estimate fluorescence using the Damm method and 3FLD method. The retrieval fluorescence is compared with the field measured fluorescence, yielding good results (R2 = 0.91 for Damm vs. SCOPE SIF; R2 = 0.65 for 3FLD vs. SCOPE SIF). Five types of vegetation, including ailanthus, elm, mountain peach, willow and Chinese ash, exhibit consistent associations between the retrieved fluorescence and field measured fluorescence. PMID:27058542

Uncertainty quantification in hydrodynamics bidimensional models : the case of Gironde estuary forecast model

NASA Astrophysics Data System (ADS)

Laborie, Vanessya; Goutal, Nicole; Ricci, Sophie; Sergent, Philippe

2017-04-01

In the context of the development and the implementation of data assimilation techniques in Gironde estuary for flood forecasting, a Telemac 2D model is used to calculate water depths and velocity fields at each node of an unstructured mesh. Upstream, the model boundaries are respectively La Réole and Pessac on the Garonne and Dordogne river. The maritime boundary is 32 km off the mouth of Gironde estuary, located in Verdon. This model, which contains 7351 nodes and 12838 finite elements, does not take into account overflows. It has been calibrated on 4 non-overflowing events and then validated on 6 overflowing events. In a first step, a mesh convergence study was carried out in order to evaluate the error related to the spatial discretization and to determine the mesh allowing to obtain results "independent" of it. Three additional meshes obtained by dividing the number of finite elements at each refinement by 4 were realized and used to simulate the event of 2003. It appears that a mesh of intermediate size (approximately 27000 nodes) seems required. In a second step, propagation and quantification of uncertainties by an unidirectional analysis method (creation of a set of 2000 members perturbed for each parameter and input forcings and analysis of output water depths) was carried out on the numerical parameters (wind influence coefficient, Strickler friction coefficients for 4 zones) and forcings of the model (rivers discharges and maritime boundary conditions, meteorological forcings). The objective is to determine the variation coefficient (if possible standardized by the input variation coefficient) of water depths for 13 major events between 1981 and 2016. The exploitation of 1981 event results shows a predominance of the influence of the maritime boundary conditions and the Strickler coefficient corresponding to the zone studied for the estuarine part and the confluence, to which must be added the Garonne discharge as a predominant parameter for the latter. Unsurprisingly, river zones are influenced primarily by the coefficient of friction and the respective river flows of Garonne and Dordogne rivers. The non-normalized variation coefficients were also calculated by taking into account the time shift of the maritime input signal and, independently, the Arpege Ensemble Predictions provided by METEO-FRANCE. The relative influence of the phase shift and the PEARP has also been determined. On the second hand, a variance sensitivity study (ANOVA) was carried out, by calculating the total and partial Sobol indices, integrating the forcing variables time- and/or space dependent. It has led to the identification of parameters and forcings to which the model is most sensitive, as well as their inter-dependencies, in order to choose the variables to assimilate. Finally, it should be noted that this work has already made it possible to create a database of multi-temporal simulations (over 13 time periods) on Gironde estuary that can, after formatting, feed the SWOT simulator for Gironde Estuary, which is used to prepare the Franco-American mission for the study of ocean and continental water depths .