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Sample records for desy wissenschaftlicher jahresbericht

  1. Centrally managed tapes at DESY

    SciTech Connect

    Hell, O.

    1994-12-31

    Tapes at DESY are managed by the computer center and thus offer virtually unlimited storage space to the DESY computer center users. This paper describes the most recent version of the DESY tape management system, its predecessors having been in service for many years.

  2. Detector developments at DESY.

    PubMed

    Wunderer, Cornelia B; Allahgholi, Aschkan; Bayer, Matthias; Bianco, Laura; Correa, Jonathan; Delfs, Annette; Göttlicher, Peter; Hirsemann, Helmut; Jack, Stefanie; Klyuev, Alexander; Lange, Sabine; Marras, Alessandro; Niemann, Magdalena; Pithan, Florian; Reza, Salim; Sheviakov, Igor; Smoljanin, Sergej; Tennert, Maximilian; Trunk, Ulrich; Xia, Qingqing; Zhang, Jiaguo; Zimmer, Manfred; Das, Dipayan; Guerrini, Nicola; Marsh, Ben; Sedgwick, Iain; Turchetta, Renato; Cautero, Giuseppe; Giuressi, Dario; Menk, Ralf; Khromova, Anastasiya; Pinaroli, Giovanni; Stebel, Luigi; Marchal, Julien; Pedersen, Ulrik; Rees, Nick; Steadman, Paul; Sussmuth, Mark; Tartoni, Nicola; Yousef, Hazem; Hyun, HyoJung; Kim, KyungSook; Rah, Seungyu; Dinapoli, Roberto; Greiffenberg, Dominic; Mezza, Davide; Mozzanica, Aldo; Schmitt, Bernd; Shi, Xintian; Krueger, Hans; Klanner, Robert; Schwandt, Joem; Graafsma, Heinz

    2016-01-01

    With the increased brilliance of state-of-the-art synchrotron radiation sources and the advent of free-electron lasers (FELs) enabling revolutionary science with EUV to X-ray photons comes an urgent need for suitable photon imaging detectors. Requirements include high frame rates, very large dynamic range, single-photon sensitivity with low probability of false positives and (multi)-megapixels. At DESY, one ongoing development project - in collaboration with RAL/STFC, Elettra Sincrotrone Trieste, Diamond, and Pohang Accelerator Laboratory - is the CMOS-based soft X-ray imager PERCIVAL. PERCIVAL is a monolithic active-pixel sensor back-thinned to access its primary energy range of 250 eV to 1 keV with target efficiencies above 90%. According to preliminary specifications, the roughly 10 cm × 10 cm, 3.5k × 3.7k monolithic sensor will operate at frame rates up to 120 Hz (commensurate with most FELs) and use multiple gains within 27 µm pixels to measure 1 to ∼100000 (500 eV) simultaneously arriving photons. DESY is also leading the development of the AGIPD, a high-speed detector based on hybrid pixel technology intended for use at the European XFEL. This system is being developed in collaboration with PSI, University of Hamburg, and University of Bonn. The AGIPD allows single-pulse imaging at 4.5 MHz frame rate into a 352-frame buffer, with a dynamic range allowing single-photon detection and detection of more than 10000 photons at 12.4 keV in the same image. Modules of 65k pixels each are configured to make up (multi)megapixel cameras. This review describes the AGIPD and the PERCIVAL concepts and systems, including some recent results and a summary of their current status. It also gives a short overview over other FEL-relevant developments where the Photon Science Detector Group at DESY is involved. PMID:26698052

  3. Salt Tolerance of Desorption Electrospray Ionization (DESI)

    SciTech Connect

    Jackson, Ayanna U.; Talaty, Nari; Cooks, R G; Van Berkel, Gary J

    2007-01-01

    Suppression of ion intensity in the presence of high salt matrices is common in most mass spectrometry ionization techniques. Desorption electrospray ionization (DESI) is an ionization method that exhibits salt tolerance, and this is investigated. DESI analysis was performed on three different drug mixtures in the presence of 0, 0.2, 2, 5, 10, and 20% NaCl:KCl weight by volume from seven different surfaces. At physiological concentrations individual drugs in each mixture were observed with each surface. Collision-induced dissociation (CID) was used to provide additional confirmation for select compounds. Multiple stage experiments, to MS5, were performed for select compounds. Even in the absence of added salt, the benzodiazepine containing mixture yielded sodium and potassium adducts of carbamazepine which masked the ions of interest. These adducts were eliminated by adding 0.1% 7M ammonium acetate to the standard methanol:water (1:1) spray solvent. Comparison of the salt tolerance of DESI with that of electrospray ionization (ESI) demonstrated much better signal/noise characteristics for DESI in this study. The salt tolerance of DESI was also studied by performing limit of detection and dynamic range experiments. Even at a salt concentration significantly above physiological concentrations, select surfaces were effective in providing spectra that allowed the ready identification of the compounds of interest. The already high salt tolerance of DESI can be optimized further by appropriate choices of surface and spray solution.

  4. Cyber-Physical Systems - Wissenschaftliche Herausforderungen Bei Der Entwicklung

    NASA Astrophysics Data System (ADS)

    Broy, Manfred

    Cyber-Physical Systems adressieren die enge Verbindung eingebetteter Systeme zur Überwachung und Steuerung physikalischer Vorgänge mittels Sensoren und Aktuatoren über Kommunikationseinrichtungen mit den globalen digitalen Netzen (dem Cyberspace"). Dieser Typus von Systemen ermöglicht über Wirkketten eine Verbindung zwischen Vorgängen der physischen Realität und den heute verfügbaren digitalen Netzinfrastrukturen. Dies erlaubt vielfältige Applikationen mit hohem wirtschaftlichen Potential, und mit starker Innovationskraft. Die vollständige Ausschöpfung des Potentials erfordert aber gezielte wissenschaftliche Anstrengungen bei der Entwicklung solcher Systeme im Hinblick auf Methodik, Technologie, Kostenbeherrschung und funktionale Angemessenheit.

  5. The DESI Wide Field Corrector Optics

    SciTech Connect

    Doel, Peter; Sholl, Michael J.; Liang, Ming; Brooks, David; Flaugher, Brenna; Gutierrez, Gaston; Kent, Stephen; Lampton, Michael; Miller, Timothy; Sprayberry, David

    2014-01-01

    The Dark Energy Spectroscopic instrument (DESI) is a 5000 fiber multi-object spectrometer system under development for installation on the National Optical Astronomy Observatory (NOAO) Kitt Peak 4m telescope (the Mayall telescope). DESI is designed to perform a 14,000˚ (square) galaxy and Quasi-Stellar Object (QSO) redshift survey to improve estimates of the dark energy equation of state. The survey design imposes numerous constraints on a prime focus corrector design, including field of view, geometrical blur, stability, fiber injection efficiency, zenith angle, mass and cost. The DESI baseline wide-field optical design described herein provides a 3.2˚ diameter field of view with six 0.8- 1.14m diameter lenses and an integral atmospheric dispersion compensator.

  6. The Dark Energy Spectroscopic Instrument (DESI)

    NASA Astrophysics Data System (ADS)

    Flaugher, Brenna; Bebek, Chris

    2014-07-01

    The Dark Energy Spectroscopic Instrument (DESI) is a Stage IV ground-based dark energy experiment that will study baryon acoustic oscillations (BAO) and the growth of structure through redshift-space distortions with a wide-area galaxy and quasar spectroscopic redshift survey. The DESI instrument consists of a new wide-field (3.2 deg. linear field of view) corrector plus a multi-object spectrometer with up to 5000 robotically positioned optical fibers and will be installed at prime focus on the Mayall 4m telescope at Kitt Peak, Arizona. The fibers feed 10 three-arm spectrographs producing spectra that cover a wavelength range from 360-980 nm and have resolution of 2000-5500 depending on the wavelength. The DESI instrument is designed for a 14,000 sq. deg. multi-year survey of targets that trace the evolution of dark energy out to redshift 3.5 using the redshifts of luminous red galaxies (LRGs), emission line galaxies (ELGs) and quasars. DESI is the successor to the successful Stage-III BOSS spectroscopic redshift survey and complements imaging surveys such as the Stage-III Dark Energy Survey (DES, currently operating) and the Stage-IV Large Synoptic Survey Telescope (LSST, planned start early in the next decade).

  7. Large Grain Superconducting RF Cavities at DESY

    SciTech Connect

    Singer, W.; Brinkmann, A.; Ermakov, A.; Iversen, J.; Kreps, G.; Matheisen, A.; Proch, D.; Reschke, D.; Singer, X.; Spiwek, M.; Wen, H.; Brokmeier, H. G.

    2007-08-09

    The DESY R and D program on cavities fabricated from large grain niobium explores the potential of this material for the production of approx. 1000 nine-cell cavities for the European XFEL. The program investigates basic material properties, comparing large grain material to standard sheet niobium, as well as fabrication and preparation aspects. Several single-cell cavities of TESLA shape have been fabricated from large grain niobium. A gradient up to 41 MV/m at Q0 = 1.4{center_dot}1010 (TB = 2K) was measured after electropolishing. The first three large grain nine-cell cavities worldwide have been produced under contract of DESY with ACCEL Instruments Co. The first tests have shown that all three cavities reach an accelerating gradient up to 30 MV/m after BCP (Buffered Chemical Polishing) treatment, what exceeds the XFEL requirements for RF test in the vertical cryostat.

  8. Status of the OLYMPUS Experiment at DESY

    SciTech Connect

    Kohl, M.

    2011-10-24

    The OLYMPUS experiment at DESY, Hamburg, Germany will definitively determine the effect of two-photon exchange in elastic lepton-proton scattering by precisely measuring the ratio of positron-proton to electron-proton elastic unpolarized cross sections. In this paper, the physics motivation is summarized, aspects of the experimental setup are discussed and the current status and timeline of the project are reviewed.

  9. Printing in Heterogeneous Computer Environment at Desy

    NASA Astrophysics Data System (ADS)

    Jakubowski, Z.

    The number of registered hosts at DESY reaches 3500 while the number of print queues approaches 150. The spectrum of used computing environment is very wide: from MAC's and PC's, through SUN, DEC and SGI machines to the IBM mainframe. In 1994 we used 18 tons of paper. We present a solution for providing print services in such an environment for more than 3500 registered users. The availability of the print service is a serious issue. Using centralized printing has a lot of advantages for software administration but creates single point of failure. We solved this problem partially without using expensive software and hardware. The talk provides information about the DESY central print spooler concept. None of the systems available on the market provides ready to use reliable solution for all platforms used by DESY. We discuss concepts for installation, administration and monitoring large number of printers. We found a solution for printing both on central computing facilities likewise for support of stand-alone workstations.

  10. The Dark Energy Spectroscopic Instrument (DESI): Science from the DESI Survey

    NASA Astrophysics Data System (ADS)

    Eisenstein, Daniel; DESI Collaboration

    2015-01-01

    The Dark Energy Spectroscopic Instrument (DESI) will enable an ambitious redshift survey to probe dark energy by the baryon acoustic oscillation and redshift-space distortion methods. The same data set will serve numerous other goals in cosmology and astrophysics. Using a new 5000-fiber instrument and 8 square degree field of view at the Mayall telescope, the DESI survey plans to cover 14,000 square degrees and about 25 million high-redshift objects. The targets include 4M luminous red galaxies (redshift 0.4-1.0), 18M emission line galaxies (redshift 0.6-1.6), and 2.4M quasars, including 0.7M Lyman-alpha forest sight lines. With this, DESI can map the expansion history of the Universe to redshift 3, achieving unprecedented performance from the baryon acoustic oscillation method. We will describe the present state of the survey design and the cosmological forecasts for dark energy, inflation, and neutrino physics. We also give an update on the DESI Science Collaboration.

  11. The NAF: National analysis facility at DESY

    NASA Astrophysics Data System (ADS)

    Haupt, Andreas; Kemp, Yves

    2010-04-01

    Within the framework of a broad collaboration among German particle physicists, the strategic Helmholtz Alliance "Physics a the Terascale", an analysis facility has been set up at DESY. The facility is intended to provide the best possible analysis infrastructure for researches of the ATLAS, CMS, LHCb and ILC experiments and also for theory researchers. In a first part of the contribution, we will present the concept of the NAF and its place in the existing distributed grid landscape of the experiments. In a second part, the building blocks of the NAF will be detailed with an emphasis on technical implementations of some parts: - Usage of VOMS for separating grid resources between collaboration-wide and NAF-specific resources. - interactive and batch cluster and integration with PROOF. - usage of grid proxies to access work group servers and AFS. - the usage and operation of Lustre for fast data access. A special focus is the seamless integration of the facility into the two geographically separated DESY sites and its implications. In a third part, the experience of running the facility for one year will be reported.

  12. Hydroforming of Tesla Cavities at Desy

    SciTech Connect

    W. Singer; H. Kaiser; X. Singer; I. Gonin; I. Zhelezov; T. Khabibullin; P. Kneisel; K. Saito

    2000-07-01

    Since several years the development of seamless niobium cavity fabrication by hydro forming is being pursued at DESY. This technique offers the possibility of lower cost of fabrication and perhaps better rf performance of the cavities because of the elimination of electron-beam welds, which in the standard fabrication technique have sometimes lead to inferior cavity performance due to defects. Several single cell 1300 MHz cavities have been formed from high purity seamless niobium tubes, which are under computer control expanded with internal pressure while simultaneously being swaged axially. The seamless tubes have been made by either back extrusion and flow forming or by spinning or deep drawing. Standard surface treatment techniques such as high temperature post purification, buffered chemical polishing (BCP), electropolishing (EP) and high pressure ultra pure water rinsing (HPR) have been applied to these cavities. The cavities exhibited high Q - values of 2 x 10{sup 10} at 2K and residual resistances as low as 3 n{Omega} after the removal of a surface layer of app. 100 {micro}m by BCP. Surprisingly, even at high gradients up to the maximum measured values of E{sub acc} {approx} 33 MV/m the Q-value did not decrease in the absence of field emission as often observed. After electropolishing of additional 100 {micro}m one of the cavities reached an accelerating gradient of E{sub acc} {ge} 42 MV/m.

  13. The Dark Energy Spectroscopic Instrument (DESI): The NOAO DECam Legacy Imaging Survey and DESI Target Selection

    NASA Astrophysics Data System (ADS)

    Schlegel, David J.; Blum, Robert D.; Castander, Francisco Javier; Dey, Arjun; Finkbeiner, Douglas P.; Foucaud, Sebastien; Honscheid, Klaus; James, David; Lang, Dustin; Levi, Michael; Moustakas, John; Myers, Adam D.; Newman, Jeffrey; Nord, Brian; Nugent, Peter E.; Patej, Anna; Reil, Kevin; Rudnick, Gregory; Rykoff, Eli S.; Ford Schlafly, Eddie; Stark, Casey; Valdes, Francisco; Walker, Alistair R.; Weaver, Benjamin; DECam Legacy Survey Collaboration

    2015-01-01

    The DECam Legacy Survey will conduct a 3-band imaging survey of the Sloan Digital Sky Survey (SDSS) extragalactic footprint. The Dark Energy Camera (DECam) will be used to image the 6700 square degree footprint overlapping SDSS in the region -20 < Dec < +30 deg, to depths of g=24.7, r=23.9, z=23.0. The survey will be conducted from Fall 2014 through Spring 2017, with periodic data releases beginning in March 2015. These releases will include catalogs constructed with the Tractor-based multi-wavelength forced photometry applied to the DECam and WISE satellite data.The Dark Energy Spectroscopic Instrument (DESI) will observe 24 million galaxies and quasars in a 14,000 square degree extragalactic footprint. The targeting in that footprint will be provided by a combination of these DECam data, the MOSAIC camera on the Mayall 4-meter, and the 90Prime camera on the Bok Telescope.

  14. Direct Analysis of Pharmaceutical Drugs Using Nano-DESI MS

    PubMed Central

    Cardoso-Palacios, Carlos

    2016-01-01

    Counterfeit pharmaceutical drugs imply an increasing threat to the global public health. It is necessary to have systems to control the products that reach the market and to detect falsified medicines. In this work, molecules in several pharmaceutical tablets were directly analyzed using nanospray desorption electrospray ionization mass spectrometry (nano-DESI MS). Nano-DESI is an ambient surface sampling technique which enables sampling of molecules directly from the surface of the tablets without any sample pretreatment. Both the active pharmaceutical ingredients (APIs) and some excipients were detected in all analyzed tablets. Principal component analysis was used to analyze mass spectral features from different tablets showing strong clustering between tablets with different APIs. The obtained results suggest nano-DESI MS as future tool for forensic analysis to discern APIs present in unknown tablet samples. PMID:27766177

  15. Novel Aspects of the DESI Data Acquisition System

    NASA Astrophysics Data System (ADS)

    Beaufore, Lucas; Honscheid, Klaus; Elliott, Ann; Dark Energy Spectroscopic Instrument Collaboration

    2015-04-01

    The Dark Energy Spectroscopic Instrument (DESI) will measure the effect of dark energy on the expansion of the universe. It will obtain optical spectra for tens of millions of galaxies and quasars, constructing a 3-dimensional map spanning the nearby universe to 10 billion light years. The survey will be conducted on the Mayall 4-meter telescope at Kitt Peak National Observatory starting in 2018. In order to achieve these scientific goals the DESI collaboration is building a high throughput spectrograph capable of observing thousands of spectra simultaneously. In this presentation we discuss the DESI instrument control and data acquisition system that is currently being developed to operate the 5,000 fiber positioners in the focal plane, the 10 spectrographs each with three CDD cameras and every other aspect of the instrument. Special emphasis will be given to novel aspects of the design including the use of inexpensive Linux-based microcontrollers such as the Raspberry PI to control a number of DESI hardware components.

  16. Coupling of Ultrafast LC with Mass Spectrometry by DESI

    NASA Astrophysics Data System (ADS)

    Cai, Yi; Liu, Yong; Helmy, Roy; Chen, Hao

    2014-10-01

    Recently we reported a desorption electrospray ionization (DESI) interface to combine liquid chromatography (LC) with mass spectrometry (MS) using a new LC eluent splitting strategy through a tiny orifice on LC capillary tube [ J. Am. Soc. Mass Spectrom. 25, 286 (2014)]. The interface introduces negligible dead volume and back pressure, thereby allowing "near real-time" MS detection, fast LC elution, and online MS-directed purification. This study further evaluates the LC/DESI-MS performance with focus of using ultra-fast LC. Using a monolithic C18 column, metabolites in urine can be separated within 1.6 min and can be online collected for subsequent structure elucidation (e.g., by NMR, UV, IR) in a recovery yield up to 99%. Using a spray solvent with alkaline pH, negative ions could be directly generated for acidic analytes (e.g., ibuprofen) in acidic LC eluent by DESI, offering a novel protocol to realize "wrong-way around" ionization for LC/MS analysis. In addition, DESI-MS is found to be compatible with ultra-performance liquid chromatography (UPLC) for the first time.

  17. Computing at DESY — current setup, trends and strategic directions

    NASA Astrophysics Data System (ADS)

    Ernst, Michael

    1998-05-01

    Since the HERA experiments H1 and ZEUS started data taking in '92, the computing environment at DESY has changed dramatically. Running a mainframe centred computing for more than 20 years, DESY switched to a heterogeneous, fully distributed computing environment within only about two years in almost every corner where computing has its applications. The computing strategy was highly influenced by the needs of the user community. The collaborations are usually limited by current technology and their ever increasing demands is the driving force for central computing to always move close to the technology edge. While DESY's central computing has a multidecade experience in running Central Data Recording/Central Data Processing for HEP experiments, the most challenging task today is to provide for clear and homogeneous concepts in the desktop area. Given that lowest level commodity hardware draws more and more attention, combined with the financial constraints we are facing already today, we quickly need concepts for integrated support of a versatile device which has the potential to move into basically any computing area in HEP. Though commercial solutions, especially addressing the PC management/support issues, are expected to come to market in the next 2-3 years, we need to provide for suitable solutions now. Buying PC's at DESY currently at a rate of about 30/month will otherwise absorb any available manpower in central computing and still will leave hundreds of unhappy people alone. Though certainly not the only region, the desktop issue is one of the most important one where we need HEP-wide collaboration to a large extent, and right now. Taking into account that there is traditionally no room for R&D at DESY, collaboration, meaning sharing experience and development resources within the HEP community, is a predominant factor for us.

  18. DESI MS based screening method for phthalates in consumer goods.

    PubMed

    Schulz, Sabine; Wagner, Sebastian; Gerbig, Stefanie; Wächter, Herbert; Sielaff, Detlef; Bohn, Dieter; Spengler, Bernhard

    2015-05-21

    Phthalates are used as plasticizes in many everyday items, but some of them are known as hormone disruptors, being especially harmful during childhood. The European Union therefore restricted their application in children's toys and certain food packaging to 0.1%w. Due to the ever increasing number of plastic-containing consumer goods, rapid screening methods are needed to ensure and improve consumer safety in the future. In this study we evaluated the performance of desorption electrospray ionization (DESI) mass spectrometry (MS) for rapid quantitative screening of phthalates in toys. DESI allowed for direct surface sampling of the toys under atmospheric conditions with minimal sample preparation, while the high performance mass spectrometer used provided a high sensitivity and reliable identification via accurate mass measurements, high mass resolving power and MS/MS capabilities. External calibration curves for six banned phthalates (DBP, BBP, DEHP, DNOP, DINP and DIDP) were obtained from matrix-matched reference materials. Coefficients of determination were greater than 0.985, LOQs ranged from 0.02%w (DIDP) to 2.26%w (DINP) and the relative standard deviation of the calibration curve slope was less than 7.8% for intraday and 11.4% for interday comparison. The phthalate contents of eleven authentic samples were determined in a proof-of-concept approach using DESI MS and results were compared to those from confirmatory methods. The phthalate content was correctly assigned with relative deviations ranging from -20% to +10% for the majority of samples. Given further optimization and automation, DESI MS is likely to become a useful tool for rapid and accurate phthalate screening in the future. PMID:25827613

  19. DESI MS based screening method for phthalates in consumer goods.

    PubMed

    Schulz, Sabine; Wagner, Sebastian; Gerbig, Stefanie; Wächter, Herbert; Sielaff, Detlef; Bohn, Dieter; Spengler, Bernhard

    2015-05-21

    Phthalates are used as plasticizes in many everyday items, but some of them are known as hormone disruptors, being especially harmful during childhood. The European Union therefore restricted their application in children's toys and certain food packaging to 0.1%w. Due to the ever increasing number of plastic-containing consumer goods, rapid screening methods are needed to ensure and improve consumer safety in the future. In this study we evaluated the performance of desorption electrospray ionization (DESI) mass spectrometry (MS) for rapid quantitative screening of phthalates in toys. DESI allowed for direct surface sampling of the toys under atmospheric conditions with minimal sample preparation, while the high performance mass spectrometer used provided a high sensitivity and reliable identification via accurate mass measurements, high mass resolving power and MS/MS capabilities. External calibration curves for six banned phthalates (DBP, BBP, DEHP, DNOP, DINP and DIDP) were obtained from matrix-matched reference materials. Coefficients of determination were greater than 0.985, LOQs ranged from 0.02%w (DIDP) to 2.26%w (DINP) and the relative standard deviation of the calibration curve slope was less than 7.8% for intraday and 11.4% for interday comparison. The phthalate contents of eleven authentic samples were determined in a proof-of-concept approach using DESI MS and results were compared to those from confirmatory methods. The phthalate content was correctly assigned with relative deviations ranging from -20% to +10% for the majority of samples. Given further optimization and automation, DESI MS is likely to become a useful tool for rapid and accurate phthalate screening in the future.

  20. The European XFEL Free Electron Laser at DESY

    ScienceCinema

    Weise, Hans [Deutsches Elektronen-Synchrotron, Germany

    2016-07-12

    The European X-ray Free-Electron laser Facility (XFEL) is going to be built in an international collaboration at the Deutsches Elektronen-Synchrotron (DESY), Germany, and the Technical Design Report was published in 2006. The official project is expected for summer 2007. This new facility will offer photon beams at wavelengths as short as 1 angstrom with highest peak brilliance being more than 100 million times higher than present day synchrotron radiation sources. The radiation has a high degree of transverse coherence and the pulse duration is reduced from {approx}100 picoseconds (typ. for SR light sources) down to the {approx}10 femtosecond time domain. The overall layout of the XFEL will be described. This includes the envisaged operation parameters for the linear accelerator using superconducting TESLA technology. The complete design is based on the actually operated FLASH free-electron laser at DESY. Experience with the operation during first long user runs at wavelengths from 30 to 13 nm will be described in detail.

  1. A first calibration study for PINGU at DESY

    SciTech Connect

    Shanidze, R.; Collaboration: IceCube-PINGU Collaboration

    2014-11-18

    PINGU, the Precision IceCube Next Generation Upgrade, aims at lowering the neutrino detection threshold of the IceCube neutrino telescope to a few GeV by adding new in-fill strings to the existing IceCube/DeepCore array. The main goal of the upgrade is to provide sensitivity to the neutrino mass hierarchy utilizing atmospheric neutrinos. Precision reconstruction of the neutrino direction and energy, which is a prerequisite for the determination of the mass hierarchy, requires accurate in-situ calibration and monitoring of the PINGU digital optical modules (PDOMs) and high-level control of systematic effects like those caused by uncertainties in the optical ice properties and sensitivity of the PDOM in ice. These proceedings present an early status of calibration studies for PINGU performed at DESY.

  2. Detecting Cheatgrass on the Colorado Plateau using Landsat data: A tutorial for the DESI software

    USGS Publications Warehouse

    Kokaly, Raymond F.

    2011-01-01

    Invasive plant species disrupt native ecosystems and cause economic harm to public lands. In this report, an example of applying the Detection of Early Season Invasives software to mapping cheatgrass infestations is given. A discussion of each step of the DESI process is given, including selection of Landsat images. Tutorial data, covering a semi-arid area in southern Utah, are distributed with this report. Tips on deriving the inputs required to run DESI are provided. An approach for evaluating and adjusting detection parameters by examining interim products of DESI is discussed.

  3. Merits of online electrochemistry liquid sample desorption electrospray ionization mass spectrometry (EC/LS DESI MS).

    PubMed

    Looi, Wen Donq; Brown, Blake; Chamand, Laura; Brajter-Toth, Anna

    2016-03-01

    A new online electrochemistry/liquid sample desorption electrospray ionization mass spectrometry (EC/LS DESI MS) system with a simple electrochemical thin-layer flow-through cell was developed and tested using N,N-dimethyl-p-phenylenediamine (DMPA) as a model probe. Although oxidation of DMPA is observed as a result of ionization of LS in positive ion mode LS DESI, application of voltage to the online electrochemical (EC) cell in EC/LS DESI MS increases yields of oxidation products. An advantage of LS DESI MS is its sensitivity in aqueous electrolyte solutions, which improves efficiency of electrochemical reactions in EC/LS DESI MS. In highly conductive low pH aqueous buffer solutions, oxidation efficiency is close to 100%. EC/ESI MS typically requires mixed aqueous/organic solvents and low electrolyte concentrations for efficient ionization in MS, limiting efficiency of electrochemistry online with MS. Independently, the results verify higher electrochemical oxidation efficiency during positive mode ESI than during LS DESI.

  4. The New Hyperspectral Sensor Desis on the Multi-Payload Platform Muses Installed on the Iss

    NASA Astrophysics Data System (ADS)

    Müller, R.; Avbelj, J.; Carmona, E.; Eckardt, A.; Gerasch, B.; Graham, L.; Günther, B.; Heiden, U.; Ickes, J.; Kerr, G.; Knodt, U.; Krutz, D.; Krawczyk, H.; Makarau, A.; Miller, R.; Perkins, R.; Walter, I.

    2016-06-01

    The new hyperspectral instrument DLR Earth Sensing Imaging Spectrometer (DESIS) will be developed and integrated in the Multi-User-System for Earth Sensing (MUSES) platform installed on the International Space Station (ISS). The DESIS instrument will be launched to the ISS mid of 2017 and robotically installed in one of the four slots of the MUSES platform. After a four month commissioning phase the operational phase will last at least until 2020. The MUSES / DESIS system will be commanded and operated by the publically traded company TBE (Teledyne Brown Engineering), which initiated the whole program. TBE provides the MUSES platform and the German Aerospace Center (DLR) develops the instrument DESIS and establishes a Ground Segment for processing, archiving, delivering and calibration of the image data mainly used for scientific and humanitarian applications. Well calibrated and harmonized products will be generated together with the Ground Segment established at Teledyne. The article describes the Space Segment consisting of the MUSES platform and the instrument DESIS as well as the activities at the two (synchronized) Ground Segments consisting of the processing methods, product generation, data calibration and product validation. Finally comments to the data policy are given.

  5. The effect of electrospray solvent composition on desorption electrospray ionisation (DESI) efficiency and spatial resolution.

    PubMed

    Green, F M; Salter, T L; Gilmore, I S; Stokes, P; O'Connor, G

    2010-04-01

    In desorption electrospray ionisation (DESI) the interaction between the electrospray and the surface is key to two important analytical parameters, the spatial resolution and the sensitivity. We evaluate the effect of the electrospray solvent type, organic solvent fraction with water, analyte solubility and substrate wettability on DESI erosion diameter and material transferral into useful ion signal. To do this five amino acids, glycine, alanine, valine, leucine and phenylalanine are prepared as thin films on three substrates, UV/ozone treated glass, glass and polytetrafluoroethylene (PTFE). Four different solvents, acetonitrile (ACN), methanol (MeOH), ethanol (EtOH) and propan-2-ol (IPA), are used with organic solvent fractions with water varying from 0.1 to 1. These model systems allow the solubility or wettability to be kept constant as other parameters are varied. Additionally, comparison with electrospray ionisation (ESI) allows effects of ionisation efficiency to be determined. It is shown that the DESI efficiency is linearly dependent on the solubility (for these materials at least) and for analytes with solubilities below 1.5 g kg(-1), additional strategies may be required for DESI to be effective. We show that the DESI erosion diameter improves linearly with organic solvent fraction, with an organic solvent fraction of 0.9 instead of 0.5 leading to a 2 fold improvement. Furthermore, this leads to a 35 fold increase in DESI efficiency, defined as the molecular ion yield per unit area. It is shown that these improvements correlate with smaller droplet sizes rather than surface wetting or ionisation. PMID:20349538

  6. Forensic applications of desorption electrospray ionisation mass spectrometry (DESI-MS).

    PubMed

    Morelato, Marie; Beavis, Alison; Kirkbride, Paul; Roux, Claude

    2013-03-10

    Desorption electrospray ionisation mass spectrometry (DESI-MS) is an emerging analytical technique that enables in situ mass spectrometric analysis of specimens under ambient conditions. It has been successfully applied to a large range of forensically relevant materials. This review assesses and highlights forensic applications of DESI-MS including the analysis and detection of illicit drugs, explosives, chemical warfare agents, inks and documents, fingermarks, gunshot residues and drugs of abuse in urine and plasma specimens. The minimal specimen preparation required for analysis and the sensitivity of detection achieved offer great advantages, especially in the field of forensic science.

  7. Desorption electrospray ionization (DESI) with atmospheric pressure ion mobility spectrometry for drug detection.

    PubMed

    Roscioli, Kristyn M; Tufariello, Jessica A; Zhang, Xing; Li, Shelly X; Goetz, Gilles H; Cheng, Guilong; Siems, William F; Hill, Herbert H

    2014-04-01

    Desorption electrospray ionization (DESI) was coupled to an ambient pressure drift tube ion mobility time-of-flight mass spectrometer (IM-TOFMS) for the direct analysis of active ingredients in pharmaceutical samples. The DESI source was also coupled with a standalone IMS demonstrating potential of portable and inexpensive drug-quality testing platforms. The DESI-IMS required no sample pretreatment as ions were generated directly from tablets and cream formulations. The analysis of a range of over-the-counter and prescription tablet formations was demonstrated for amphetamine (methylphenidate), antidepressant (venlafaxine), barbiturate (Barbituric acid), depressant (alprazolam), narcotic (3-methylmorphine) and sympatholytic (propranolol) drugs. Active ingredients from soft and liquid formulations, such as Icy Hot cream (methyl salicylate) and Nyquil cold medicine (acetaminophen, dextromethorphan, doxylamine) were also detected. Increased sensitivity for selective drug responses was demonstrated through the formation of sodiated adduct ions by introducing small quantities of NaCl into the DESI solvent. Of the drugs and pharmaceuticals tested in this study, 68% (22 total samples) provided a clear ion mobility response at characteristic mobilities either as (M + H)(+), (M - H)(-), or (M + Na)(+) ions.

  8. Test Sequence for Superconducting XFEL Cavities in the Accelerator Module Test Facility (AMTF) at DESY

    NASA Astrophysics Data System (ADS)

    Schaffran, J.; Petersen, B.; Reschke, D.; Swierblewski, J.

    The European XFEL is a new research facility currently under construction at DESY in the Hamburg area in Germany. From 2016 onwards, it will generate extremely intense X-ray flashes that will be used by researchers from all over the world. The main part of the superconducting European XFEL linear accelerator consists of 100 accelerator modules with 800 RF-cavities inside. The accelerator modules, superconducting magnets and cavities will be tested in the accelerator module test facility (AMTF) at DESY. This paper gives an overview of the test sequences for the superconducting cavities, applied in the preparation area and at the two cryostats (XATC) of the AMTF-hall, and describes the complete area. In addition it summarizes the tests and lessons learnt until the middle of 2014.

  9. Improved DESI-MS Performance using Edge Sampling and aRotational Sample Stage

    SciTech Connect

    Kertesz, Vilmos; Van Berkel, Gary J

    2008-01-01

    The position of the surface to be analyzed relative to the sampling orifice or capillary into the mass spectrometer has been known to dramatically affect the observed signal levels in desorption electrospray ionization mass spectrometry (DESIMS). In analyses of sample spots on planar surfaces, DESI-MS signal intensities as much as five times greater were routinely observed when the bottom of the sampling capillary was appropriately positioned beneath the surface plane ( edge sampling") compared to when the capillary just touched the surface. To take advantage of the optimum "edge sampling" geometry and to maximize the number of samples that could be analyzed in this configuration, a rotational sample stage was integrated into a typical DESI-MS setup. The rapid quantitative determination of caffeine in two diet sport drinks (Diet Turbo Tea, Speed Stack Grape) spiked with an isotopically labeled internal standard demonstrated the utility of this approach.

  10. DESI-MS/MS of Chemical Warfare Agents and Related Compounds

    NASA Astrophysics Data System (ADS)

    D'Agostino, Paul A.

    Solid phase microextraction (SPME) fibers were used to headspace ­sample chemical warfare agents and their hydrolysis products from glass vials and glass vials containing spiked media, including Dacron swabs, office carpet, paper and fabric. The interface of the Z-spray source was modified to permit safe introduction of the SPME fibers for desorption electrospray ionization mass spectrometric (DESI-MS) analysis. A "dip and shoot" method was also developed for the rapid sampling and DESI-MS analysis of chemical warfare agents and their hydrolysis products in liquid samples. Sampling was performed by simply dipping fused silica, stainless steel or SPME tips into the organic or aqueous samples. Replicate analyses were completed within several minutes under ambient conditions with no sample pre-treatment, resulting in a significant increase in sample throughput. The developed sample handling and analysis method was applied to the determination of chemical warfare agent content in samples containing unknown chemical and/or biological warfare agents. Ottawa sand was spiked with sulfur mustard, extracted with water and autoclaved to ensure sterility. Sulfur mustard was completely hydrolysed during the extraction/autoclave step and thiodiglycol was identified by DESI-MS, with analyses generally being completed within 1 min using the "dip and shoot" method.

  11. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).

    PubMed

    Parween, Sabiha; Nawaz, Kashif; Roy, Riti; Pole, Anil K; Venkata Suresh, B; Misra, Gopal; Jain, Mukesh; Yadav, Gitanjali; Parida, Swarup K; Tyagi, Akhilesh K; Bhatia, Sabhyata; Chattopadhyay, Debasis

    2015-01-01

    Chickpea (Cicer arietinum L.) is an important pulse legume crop. We previously reported a draft genome assembly of the desi chickpea cultivar ICC 4958. Here we report an advanced version of the ICC 4958 genome assembly (version 2.0) generated using additional sequence data and an improved genetic map. This resulted in 2.7-fold increase in the length of the pseudomolecules and substantial reduction of sequence gaps. The genome assembly covered more than 94% of the estimated gene space and predicted the presence of 30,257 protein-coding genes including 2230 and 133 genes encoding potential transcription factors (TF) and resistance gene homologs, respectively. Gene expression analysis identified several TF and chickpea-specific genes with tissue-specific expression and displayed functional diversification of the paralogous genes. Pairwise comparison of pseudomolecules in the desi (ICC 4958) and the earlier reported kabuli (CDC Frontier) chickpea assemblies showed an extensive local collinearity with incongruity in the placement of large sequence blocks along the linkage groups, apparently due to use of different genetic maps. Single nucleotide polymorphism (SNP)-based mining of intra-specific polymorphism identified more than four thousand SNPs differentiating a desi group and a kabuli group of chickpea genotypes. PMID:26259924

  12. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).

    PubMed

    Parween, Sabiha; Nawaz, Kashif; Roy, Riti; Pole, Anil K; Venkata Suresh, B; Misra, Gopal; Jain, Mukesh; Yadav, Gitanjali; Parida, Swarup K; Tyagi, Akhilesh K; Bhatia, Sabhyata; Chattopadhyay, Debasis

    2015-08-11

    Chickpea (Cicer arietinum L.) is an important pulse legume crop. We previously reported a draft genome assembly of the desi chickpea cultivar ICC 4958. Here we report an advanced version of the ICC 4958 genome assembly (version 2.0) generated using additional sequence data and an improved genetic map. This resulted in 2.7-fold increase in the length of the pseudomolecules and substantial reduction of sequence gaps. The genome assembly covered more than 94% of the estimated gene space and predicted the presence of 30,257 protein-coding genes including 2230 and 133 genes encoding potential transcription factors (TF) and resistance gene homologs, respectively. Gene expression analysis identified several TF and chickpea-specific genes with tissue-specific expression and displayed functional diversification of the paralogous genes. Pairwise comparison of pseudomolecules in the desi (ICC 4958) and the earlier reported kabuli (CDC Frontier) chickpea assemblies showed an extensive local collinearity with incongruity in the placement of large sequence blocks along the linkage groups, apparently due to use of different genetic maps. Single nucleotide polymorphism (SNP)-based mining of intra-specific polymorphism identified more than four thousand SNPs differentiating a desi group and a kabuli group of chickpea genotypes.

  13. Detection of saccharides by reactive desorption electrospray ionization (DESI) using modified phenylboronic acids

    NASA Astrophysics Data System (ADS)

    Zhang, Yun; Chen, Hao

    2010-01-01

    We have reported previously a method for the detection of sugars via in-situ derivatization with phenylboronic acid PhB(OH)2 using reactive desorption electrospray ionization (DESI, Chen et al., Chem. Commun. (2006) 597-599). The present study describes an improved method that employs modified phenylboronic acids including 3-nitrophenylboronic acid and N-methyl-4-pyridineboronic acid iodide. In contrast to using PhB(OH)2, enhanced sensitivity of using 3-nitrophenylboronic acid was observed due to the stabilization of the resulting boronate ester anion by the electron-withdrawing nitro group and the limit of detections (LODs) for glucose in water using 3-nitrophenylbornic acid and phenylboronic acid were determined to be 0.11 mM and 0.40 mM, respectively. In the case of N-methyl-4-pyridineboronic acid iodide, the corresponding LOD is 6.9 [mu]M and the higher sensitivity obtained is attributed to the efficient ionization of both the reactive DESI reagent and reaction product since the precursor acid with a quaternary ammonium group is pre-charged. In this case, additional important features are found: (i) unlike using phenylboronic acid or 3-nitrophenylbornic acid, the experiment, performed in the positive ion mode, is applicable to neutral and acidic saccharide solutions, facilitating the analysis of biological fluids without the need to adjust pH; (ii) simply by changing the spray solvent from water to acetonitrile, the method can be used for direct glucose analyses of both urine and serum samples via online desalting, due to the low solubility of salts of these biofluids in the sprayed organic solvent; (iii) in comparison with other sugar derivatizing reagents such as the Girard's reagent T, the N-methyl-4-pyridineboronic acid iodide shows higher reactivity in the reactive DESI; and (iv) the ions of saccharide DESI reaction products undergo extensive ring or glycosidic bond cleavage upon CID, a feature that might be useful in the structure elucidation of

  14. Differential response of kabuli and desi chickpea genotypes toward inoculation with PGPR in different soils

    PubMed Central

    Imran, Asma; Mirza, Muhammad S.; Shah, Tariq M.; Malik, Kauser A.; Hafeez, Fauzia Y.

    2015-01-01

    Pakistan is among top three chickpea producing countries but the crop is usually grown on marginal lands without irrigation and fertilizer application which significantly hampers its yield. Soil fertility and inoculation with beneficial rhizobacteria play a key role in nodulation and yield of legumes. Four kabuli and six desi chickpea genotypes were, therefore, evaluated for inoculation response with IAA-producing Ochrobactrum ciceri Ca-34T and nitrogen fixing Mesorhizobium ciceri TAL-1148 in single and co-inoculation in two soils. The soil type 1 was previously unplanted marginal soil having low organic matter, P and N contents compared to soil type 2 which was a fertile routinely legume-cultivated soil. The effect of soil fertility status was pronounced and fertile soil on average, produced 31% more nodules, 62% more biomass and 111% grain yield than marginal soil. Inoculation either with O. ciceri alone or its co-inoculation with M. ciceri produced on average higher nodules (42%), biomass (31%), grains yield (64%) and harvest index (72%) in both chickpea genotypes over non-inoculated controls in both soils. Soil 1 showed maximum relative effectiveness of Ca-34T inoculation for kabuli genotypes while soil 2 showed for desi genotypes except B8/02. Desi genotype B8/02 in soil type 1 and Pb-2008 in soil type 2 showed significant yield increase as compared to respective un-inoculated controls. Across bacterial inoculation treatments, grain yield was positively correlated to growth and yield contributing parameters (r = 0.294* to 0.838*** for desi and r = 0.388* to 0.857** for kabuli). PCA and CAT-PCA analyses clearly showed a site-specific response of genotype x bacterial inoculation. Furthermore, the inoculated bacterial strains were able to persist in the rhizosphere showing colonization on root and within nodules. Present study shows that plant growth promoting rhizobacteria (PGPR) inoculation should be integrated with national chickpea breading program in

  15. Analysis of DESY-Flash LLRF Measurements for the ILC Heavy Beam Loading Test

    SciTech Connect

    Cancelo, Gustavo; Chase, Brian; Davidsaver, Michael; Carwardine, J.; Simrock, Stefan; Ayvazyan, Valeri; Grecki, Mariusz; Matsumoto, Toshihiro; Michizono, Shinichiro; /KEK, Tsukuba

    2009-06-01

    In September 2008 the DESY-FLASH accelerator was run with up to 550, 3 nano-coulomb bunches at 5 Hz repetition rate. This test is part of a longer-term study aimed at validating ILC parameters by operation as close as possible to ILC beam currents and RF gradients. The present paper reports on the analysis that has been done in order to understand the RF control system performance during this test. Actual klystron power requirements and beam stability are evaluated with heavy beam loading conditions. Results include suggested improvements for upcoming tests in 2009.

  16. Blotting Assisted by Heating and Solvent Extraction for DESI-MS Imaging

    NASA Astrophysics Data System (ADS)

    Cabral, Elaine C.; Mirabelli, Mario F.; Perez, Consuelo J.; Ifa, Demian R.

    2013-06-01

    Imprints of potato sprout ( Solanum tuberosum L.), gingko leaves (Gingko biloba L. ) and strawberries (Fragaria x ananassa Duch. ) were successfully imaged by desorption electrospray ionization mass spectrometry (DESI-MS) on TLC plates through blotting assisted by heating and/or solvent extraction. Ion images showing the distribution of significant compounds such as glycoalkaloid toxins in potato sprout, ginkgolic acids and flavonoids in ginkgo leaves, and sugars and anthocyanidin in strawberry were obtained. Practical implications of this work include analysis of a wide range of irregular or soft materials by different imprinting conditions without requiring the addition of matrices or use of specific kinds of surfaces.

  17. Blotting assisted by heating and solvent extraction for DESI-MS imaging.

    PubMed

    Cabral, Elaine C; Mirabelli, Mario F; Perez, Consuelo J; Ifa, Demian R

    2013-06-01

    Imprints of potato sprout (Solanum tuberosum L.), gingko leaves (Gingko biloba L.) and strawberries (Fragaria x ananassa Duch.) were successfully imaged by desorption electrospray ionization mass spectrometry (DESI-MS) on TLC plates through blotting assisted by heating and/or solvent extraction. Ion images showing the distribution of significant compounds such as glycoalkaloid toxins in potato sprout, ginkgolic acids and flavonoids in ginkgo leaves, and sugars and anthocyanidin in strawberry were obtained. Practical implications of this work include analysis of a wide range of irregular or soft materials by different imprinting conditions without requiring the addition of matrices or use of specific kinds of surfaces. PMID:23605686

  18. Blotting assisted by heating and solvent extraction for DESI-MS imaging.

    PubMed

    Cabral, Elaine C; Mirabelli, Mario F; Perez, Consuelo J; Ifa, Demian R

    2013-06-01

    Imprints of potato sprout (Solanum tuberosum L.), gingko leaves (Gingko biloba L.) and strawberries (Fragaria x ananassa Duch.) were successfully imaged by desorption electrospray ionization mass spectrometry (DESI-MS) on TLC plates through blotting assisted by heating and/or solvent extraction. Ion images showing the distribution of significant compounds such as glycoalkaloid toxins in potato sprout, ginkgolic acids and flavonoids in ginkgo leaves, and sugars and anthocyanidin in strawberry were obtained. Practical implications of this work include analysis of a wide range of irregular or soft materials by different imprinting conditions without requiring the addition of matrices or use of specific kinds of surfaces.

  19. A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.

    PubMed

    Ruperao, Pradeep; Chan, Chon-Kit Kenneth; Azam, Sarwar; Karafiátová, Miroslava; Hayashi, Satomi; Cížková, Jana; Saxena, Rachit K; Simková, Hana; Song, Chi; Vrána, Jan; Chitikineni, Annapurna; Visendi, Paul; Gaur, Pooran M; Millán, Teresa; Singh, Karam B; Taran, Bunyamin; Wang, Jun; Batley, Jacqueline; Doležel, Jaroslav; Varshney, Rajeev K; Edwards, David

    2014-08-01

    With the expansion of next-generation sequencing technology and advanced bioinformatics, there has been a rapid growth of genome sequencing projects. However, while this technology enables the rapid and cost-effective assembly of draft genomes, the quality of these assemblies usually falls short of gold standard genome assemblies produced using the more traditional BAC by BAC and Sanger sequencing approaches. Assembly validation is often performed by the physical anchoring of genetically mapped markers, but this is prone to errors and the resolution is usually low, especially towards centromeric regions where recombination is limited. New approaches are required to validate reference genome assemblies. The ability to isolate individual chromosomes combined with next-generation sequencing permits the validation of genome assemblies at the chromosome level. We demonstrate this approach by the assessment of the recently published chickpea kabuli and desi genomes. While previous genetic analysis suggests that these genomes should be very similar, a comparison of their chromosome sizes and published assemblies highlights significant differences. Our chromosomal genomics analysis highlights short defined regions that appear to have been misassembled in the kabuli genome and identifies large-scale misassembly in the draft desi genome. The integration of chromosomal genomics tools within genome sequencing projects has the potential to significantly improve the construction and validation of genome assemblies. The approach could be applied both for new genome assemblies as well as published assemblies, and complements currently applied genome assembly strategies.

  20. DESI and other Dark Energy experiments in the era of neutrino mass measurements

    SciTech Connect

    Font-Ribera, Andreu; McDonald, Patrick; Mostek, Nick; Reid, Beth A.; Seo, Hee-Jong; Slosar, Anže E-mail: PVMcDonald@lbl.gov E-mail: BAReid@lbl.gov E-mail: anze@bnl.gov

    2014-05-01

    We present Fisher matrix projections for future cosmological parameter measurements, including neutrino masses, Dark Energy, curvature, modified gravity, the inflationary perturbation spectrum, non-Gaussianity, and dark radiation. We focus on DESI and generally redshift surveys (BOSS, HETDEX, eBOSS, Euclid, and WFIRST), but also include CMB (Planck) and weak gravitational lensing (DES and LSST) constraints. The goal is to present a consistent set of projections, for concrete experiments, which are otherwise scattered throughout many papers and proposals. We include neutrino mass as a free parameter in most projections, as it will inevitably be relevant — DESI and other experiments can measure the sum of neutrino masses to ∼ 0.02 eV or better, while the minimum possible sum is ∼ 0.06 eV. We note that constraints on Dark Energy are significantly degraded by the presence of neutrino mass uncertainty, especially when using galaxy clustering only as a probe of the BAO distance scale (because this introduces additional uncertainty in the background evolution after the CMB epoch). Using broadband galaxy power becomes relatively more powerful, and bigger gains are achieved by combining lensing survey constraints with redshift survey constraints. We do not try to be especially innovative, e.g., with complex treatments of potential systematic errors — these projections are intended as a straightforward baseline for comparison to more detailed analyses.

  1. Advances in Large Grain/Single Crystal SC Resonators at DESY

    SciTech Connect

    W. Singer; A. Brinkmann; A. Ermakov; J. Iversen; G. Kreps; A. Matheisen; D. Proch; D. Reschke; X. Singer; M. Spiwek; H. We; P. Kneisel; M. Pekeler

    2007-08-01

    The main aim of the DESY large grain R&D program is to check whether this option is reasonable to apply for fabrication of ca. 1'000 XFEL cavities. Two aspects are being pursued. On one hand the basic material investigation, on the other hand the material availability, fabrication and preparation procedure. Several single cell large grain cavities of TESLA shape have been fabricated and tested. The best accelerating gradients of 41 MV/m was measured on electropolished cavity. First large grain nine-cell cavities worldwide have been produced under contract of DESY with ACCEL Instruments Co. All three cavities fulfil the XFEL specification already in first RF test after only BCP (Buffered Chemical Polishing) treatment and 800 degrees C annealing. Accelerating gradient of 27 - 29 MV/m was reached. A fabrication method of single crystal cavity of ILC like shape was proposed. A single cell single crystal cavity was build at the company ACCEL. Accelerating gradient of 37.5 MV/m reached after only 112 microns BCP and in situ baking 120 degrees C for 6 hrs with the quality factor higher as 2x1010. The developed method can be extended on fabrication of multi cell single crystal cavities.

  2. Upgrade of the H^--injection system at the DESY proton Linac III

    NASA Astrophysics Data System (ADS)

    Kleffner, C.-M.; Holtkamp, N.; Jacobs, G.; Nagl, M.; Deitinghoff, H.; Paramonov, V.

    1997-05-01

    In the near future an upgrade of the injection system of the proton linac at DESY is foreseen. Two different types of H^--sources are operated at DESY. The new rf-driven volume source is cesium free. On a long-term basis this source is planned to replace the operating magnetron source. For reasons of reliability of the proton linac and further developments of sources parallel operation of two sources should be possible at the the Alvarez linac. Each source has a separate RFQ to accelerate the ions to an energy of 750 keV. A new transport line with one dipole, 8 quadrupoles and one intermediate buncher was designed to match the beam between both RFQs and the Alvarez linac. The codes COPPOC and TRANSPORT were used for determining the length of the transport line and the parameters of the dipole and the buncher. Because of the high currents of more than 20 mA the estimate of the space charge forces is of special interest. The macro-particle-code PARMTRA takes into account the particle-to-particle electric forces among all particles. The properties of the beam line have been studied in connection with the effects of the final beam quality after acceleration with the 50 MeV Alvarez linac.

  3. A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.

    PubMed

    Ruperao, Pradeep; Chan, Chon-Kit Kenneth; Azam, Sarwar; Karafiátová, Miroslava; Hayashi, Satomi; Cížková, Jana; Saxena, Rachit K; Simková, Hana; Song, Chi; Vrána, Jan; Chitikineni, Annapurna; Visendi, Paul; Gaur, Pooran M; Millán, Teresa; Singh, Karam B; Taran, Bunyamin; Wang, Jun; Batley, Jacqueline; Doležel, Jaroslav; Varshney, Rajeev K; Edwards, David

    2014-08-01

    With the expansion of next-generation sequencing technology and advanced bioinformatics, there has been a rapid growth of genome sequencing projects. However, while this technology enables the rapid and cost-effective assembly of draft genomes, the quality of these assemblies usually falls short of gold standard genome assemblies produced using the more traditional BAC by BAC and Sanger sequencing approaches. Assembly validation is often performed by the physical anchoring of genetically mapped markers, but this is prone to errors and the resolution is usually low, especially towards centromeric regions where recombination is limited. New approaches are required to validate reference genome assemblies. The ability to isolate individual chromosomes combined with next-generation sequencing permits the validation of genome assemblies at the chromosome level. We demonstrate this approach by the assessment of the recently published chickpea kabuli and desi genomes. While previous genetic analysis suggests that these genomes should be very similar, a comparison of their chromosome sizes and published assemblies highlights significant differences. Our chromosomal genomics analysis highlights short defined regions that appear to have been misassembled in the kabuli genome and identifies large-scale misassembly in the draft desi genome. The integration of chromosomal genomics tools within genome sequencing projects has the potential to significantly improve the construction and validation of genome assemblies. The approach could be applied both for new genome assemblies as well as published assemblies, and complements currently applied genome assembly strategies. PMID:24702794

  4. Analysis of metabolic changes in plant pathosystems by imprint imaging DESI-MS.

    PubMed

    Tata, Alessandra; Perez, Consuelo J; Hamid, Tanam S; Bayfield, Mark A; Ifa, Demian R

    2015-04-01

    The response of plants to microbial pathogens is based on the production of secondary metabolites. The complexity of plant-pathogen interactions makes their understanding a challenging task for metabolomic studies requiring powerful analytical approaches. In this paper, the ability of ambient mass spectrometry to provide a snapshot of plant metabolic response to pathogen invasion was tested. The fluctuations of glycoalkaloids present in sprouted potatoes infected by the phytopathogen Pythium ultimum were monitored by imprint imaging desorption electrospray ionization mass spectrometry (DESI-MS). After 8 d from the inoculation, a decrease of the relative abundance of potato glycoalkaloids α-solanine (m/z 706) and α-chaconine (m/z 722) was observed, whereas the relative intensity of solanidine (m/z 398), solasodenone (m/z 412), solanaviol (m/z 430), solasodiene (m/z 396), solaspiralidine (m/z 428), γ-solanine/γ-chaconine (m/z 560) , β-solanine (m/z 706), and β-chaconine (m/z 722) increased. The progression of the disease, expressed by the development of brown necrotic lesions on the potato, led to the further decrease of all the glycoalkaloid metabolites. Therefore, the applicability of imprint imaging DESI-MS in studying the plant metabolic changes in a simple pathosystem was demonstrated with minimal sample preparation.

  5. Analysis of Metabolic Changes in Plant Pathosystems by Imprint Imaging DESI-MS

    NASA Astrophysics Data System (ADS)

    Tata, Alessandra; Perez, Consuelo J.; Hamid, Tanam S.; Bayfield, Mark A.; Ifa, Demian R.

    2015-04-01

    The response of plants to microbial pathogens is based on the production of secondary metabolites. The complexity of plant-pathogen interactions makes their understanding a challenging task for metabolomic studies requiring powerful analytical approaches. In this paper, the ability of ambient mass spectrometry to provide a snapshot of plant metabolic response to pathogen invasion was tested. The fluctuations of glycoalkaloids present in sprouted potatoes infected by the phytopathogen Pythium ultimum were monitored by imprint imaging desorption electrospray ionization mass spectrometry (DESI-MS). After 8 d from the inoculation, a decrease of the relative abundance of potato glycoalkaloids α-solanine ( m/z 706) and α-chaconine ( m/z 722) was observed, whereas the relative intensity of solanidine ( m/z 398), solasodenone ( m/z 412), solanaviol ( m/z 430), solasodiene ( m/z 396), solaspiralidine ( m/z 428), γ-solanine/γ-chaconine ( m/z 560) , β-solanine ( m/z 706), and β-chaconine ( m/z 722) increased. The progression of the disease, expressed by the development of brown necrotic lesions on the potato, led to the further decrease of all the glycoalkaloid metabolites. Therefore, the applicability of imprint imaging DESI-MS in studying the plant metabolic changes in a simple pathosystem was demonstrated with minimal sample preparation.

  6. The National Analysis Facility at DESY - status and use cases by the participating experiments

    NASA Astrophysics Data System (ADS)

    Aplin, S.; Ehrenfeld, W.; Haupt, A.; Kemp, Y.; Langenbruch, C.; Leffhalm, K.; Lucaci-Timoce, A.; Stadie, H.

    2011-12-01

    The German National Analysis Facility (NAF) was set up at DESY, starting end of 2007 in the context of the Helmholtz Alliance "Physics at the Terascale". The NAF complements the DESY and the German Grid resources, and hence offers users from the German HEP institutes the best possible environment for data analysis. In the first part, the key aspects and components of the NAF are briefly presented with an emphasis on recent improvements. In the second part, the use cases of the three participating LHC experiments, ATLAS, CMS and LHCb, will be presented. Differences and commonalities in the usage of the NAF will be shown. Special emphasis will be placed on the usage of PROOF, whose usage on the NAF has been pioneered by CMS. It is now adapted by ATLAS. The third part will concentrate on how the NAF was used for detector optimisation studies in the preparation of one of the ILC Lol's (ILD 2009), as well as how CALICE uses the NAF for the analysis of their data taken in several test beam experiments performed for detector R & D. Finally, future developments of the NAF are presented.

  7. HPTLC/DESI-MS Imaging of Tryptic Protein Digests Separated in Two Dimensions

    SciTech Connect

    Pasilis, Sofie P; Kertesz, Vilmos; Van Berkel, Gary J; Schulz, Michael; Schorcht, Susanne

    2008-01-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) was demonstrated as a method to detect and identify peptides from two-dimensional separations of cytochrome c and myoglobin tryptic digests on ProteoChrom HPTLC Cellulose sheets. Data-dependent tandem mass spectra were acquired during lane scans across the TLC plates. Peptides and the corresponding proteins were identified using a protein database search software. Two-dimensional distributions of identified peptides were mapped for each separated protein digest. Sequence coverages for cytochrome c and myoglobin were 81% and 74%, respectively. These compared well to those determined using the more standard HPLC/ESI-MS/MS approach (89% and 84%, respectively). Preliminary results show that use of more sensitive instrumentation has the potential for improved detection of peptides with low Rf values and improvement in sequence coverage. However, less multiple charging and more sodiation were seen in HPTLC/DESI-MS spectra relative to HPLC/ESI-MS spectra, which can affect peptide identification by MS/MS. Methods to increase multiple charging and reduce the extent of sodiation are currently under investigation.

  8. SINBAD-The accelerator R&D facility under construction at DESY

    NASA Astrophysics Data System (ADS)

    Dorda, U.; Assmann, R.; Brinkmann, R.; Flöttmann, K.; Hartl, I.; Hüning, M.; Kärtner, F.; Fallahi, A.; Marchetti, B.; Nie, Y.; Osterhoff, J.; Schlarb, H.; Zhu, J.; Maier, A. R.

    2016-09-01

    The SINBAD facility (Short INnovative Bunches and Accelerators at DESY) is a long-term dedicated accelerator research and development facility currently under construction at DESY. It will be located in the premises of the old DORIS accelerator complex and host multiple independent experiments cost-effectively accessing the same central infrastructure like a central high power laser. With the removal of the old DORIS accelerator being completed, the refurbishment of the technical infrastructure is currently starting up. The presently ongoing conversion of the area into the SINBAD facility and the currently foreseen layout is described. The first experiment will use a compact S-band linac for the production of ultra-short bunches at hundred MeV. Once established, one of the main usages will be to externally inject electrons into a laser-driven plasma wakefield accelerator to boost the energy to GeV-level while maintaining a usable beam quality, ultimately aiming to drive an FEL. The second experiment already under planning is the setup of an attosecond radiation source with advanced technology. Further usage of the available space and infrastructure is revised and national and international collaborations are being established.

  9. Potential applications of the dielectric wakefield accelerators in the SINBAD facility at DESY

    NASA Astrophysics Data System (ADS)

    Nie, Y. C.; Assmann, R.; Dorda, U.; Marchetti, B.; Weikum, M.; Zhu, J.; Hüning, M.

    2016-09-01

    Short, high-brightness relativistic electron bunches can drive ultra-high wakefields in the dielectric wakefield accelerators (DWFAs). This effect can be used to generate high power THz coherent Cherenkov radiation, accelerate a witness bunch with gradient two or three orders of magnitude larger than that in the conventional RF linear accelerators, introduce energy modulation within the driving bunch itself, etc. The paper studies potential applications of the DWFAs in the SINBAD facility at DESY. The simulations show that the ultra-short relativistic bunches from the SINBAD injector ARES can excite accelerating wakefields with peak amplitudes as high as GV/m at THz frequencies in proper DWFA structures. In addition, it illustrates that the DWFA structure can serve as a dechirper to compensate the correlated energy spread of the bunches accelerated by the laser plasma wakefield accelerator.

  10. Review of R&D at DESY on ingot niobium for accelerators

    SciTech Connect

    Navitski, Aliaksandr Sekutowicz, Jacek Singer, Waldemar Singer, Xenia

    2015-12-04

    An R&D program at DESY exploring the potential of the production of 1.3 GHz TESLA shape cavities from large grain or ingot niobium material has been carried out as a feasibility study for using ingot niobium material for the European X-ray Free-Electron Laser project. The most important issues like feasibility of the fabrication of niobium discs from ingots, material properties, cavity fabrication, treatment, and finally the cryogenic radiofrequency (RF) performance of the cavity in the accelerator modules are presented and discussed. At least 25% higher intrinsic quality factor comparing to conventional fine-grain niobium and high accelerating gradient of up to 45 MV/m have been demonstrated during the cryogenic RF tests both in the vertical cryostats and in a completely assembled accelerating cryo-module.

  11. A VUV free electron laser at the TESLA test facility at DESY

    NASA Astrophysics Data System (ADS)

    Rossbach, J.; Tesla Fel Study Group

    1996-02-01

    We present the layout of a single pass free electron laser (FEL) to be driven by the TESLA Test Facility (TTF) currently under construction at DESY. The TTF is a test-bed for high-gradient, high efficiency superconducting acceleration sections for a future linear collider. Due to its unrivaled ability to sustain high beam quality during acceleration, a superconducting rf linac is considered the optimum choice to drive a FEL. We aim at a photon wavelength of λ = 6 nm utilizing the TTF after it has been extended to 1 GeV beam energy. Due to lack of mirrors and seed-lasers in this wavelength regime, a single pass FEL and self-amplified spontaneous emission (SASE) is considered. A first test is foreseen at a larger photon wavelength. The overall design as well as both electron and photon beam properties are discussed.

  12. On-probe pyrolysis desorption ecectrospray ionization (DESI) mass spectrometry for the analysis of non-volatile pyrolysis products

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An on-probe pyrolyzer has been constructed and interfaced with desorption electrospray ionization (DESI) mass spectrometry (MS) for the rapid analysis of non-volatile pyrolysis products. The detection and analysis of non-volatile pyrolysis products of peptides, proteins and the synthetic polymer pol...

  13. A Combined Desorption Ionization by Charge Exchange (DICE) and Desorption Electrospray Ionization (DESI) Source for Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Chan, Chang-Ching; Bolgar, Mark S.; Miller, Scott A.; Attygalle, Athula B.

    2011-01-01

    A source that couples the desorption ionization by charge exchange (DICE) and desorption electrospray ionization (DESI) techniques together was demonstrated to broaden the range of compounds that can be analyzed in a single mass spectrometric experiment under ambient conditions. A tee union was used to mix the spray reagents into a partially immiscible blend before this mixture was passed through a conventional electrospray (ES) probe capillary. Using this technique, compounds that are ionized more efficiently by the DICE method and those that are ionized better with the DESI procedure could be analyzed simultaneously. For example, hydroquinone, which is not detected when subjected to DESI-MS in the positive-ion generation mode, or the sodium adduct of guaifenesin, which is not detected when examined by DICE-MS, could both be detected in one experiment when the two techniques were combined. The combined technique was able to generate the molecular ion, proton and metal adduct from the same compound. When coupled to a tandem mass spectrometer, the combined source enabled the generation of product ion spectra from the molecular ion and the [M + H]+ or [M + metal]+ ions of the same compound without the need to physically change the source from DICE to DESI. The ability to record CID spectra of both the molecular ion and adduct ions in a single mass spectrometric experiment adds a new dimension to the array of mass spectrometric methods available for structural studies.

  14. A Comparison of DESI-MS and LC-MS for the Lipidomic Profiling of Human Cancer Tissue

    NASA Astrophysics Data System (ADS)

    Abbassi-Ghadi, Nima; Jones, Emrys A.; Gomez-Romero, Maria; Golf, Ottmar; Kumar, Sacheen; Huang, Juzheng; Kudo, Hiromi; Goldin, Rob D.; Hanna, George B.; Takats, Zoltan

    2016-02-01

    In this study, we make a direct comparison between desorption electrospray ionization-mass spectrometry (DESI-MS) and ultraperformance liquid chromatography-electrospray ionization-mass spectrometry (UPLC-ESI-MS) platforms for the profiling of glycerophospholipid (GPL) species in esophageal cancer tissue. In particular, we studied the similarities and differences in the range of GPLs detected and the congruency of their relative abundances as detected by each analytical platform. The main differences between mass spectra of the two modalities were found to be associated with the variance in adduct formation of common GPLs, rather than the presence of different GPL species. Phosphatidylcholines as formate adducts in UPLC-ESI-MS accounted for the majority of differences in negative ion mode and alkali metal adducts of phosphatidylcholines in DESI-MS for positive ion mode. Comparison of the relative abundance of GPLs, normalized to a common peak, revealed a correlation coefficient of 0.70 ( P < 0.001). The GPL profile detected by DESI-MS is congruent to UPLC-ESI-MS, which reaffirms the role of DESI-MS for lipidomic profiling and a potential premise for quantification.

  15. Studies on a VUV free electron laser at the TESLA Test Facility at DESY

    SciTech Connect

    Rossbach, J.

    1995-12-31

    The TESLA Test Facility (TTF) currently under construction at DESY is a test-bed for acceleration sections of a high-gradient, high efficiency superconducting linear collider. Due to ist unrivaled ability to sustain high beam quality during acceleration, a superconducting rf linac is considered the optimum choice to drive a Free Electron Laser (FEL). We aim at a photon wavelength of {lambda} = 6 manometer utilizing the TTF after is has been extended to 1 GeV beam energy. Due to lack of mirrors and seed-lasers in this wavelength regime, a single pass FEL and Self-Amplified-Spontaneous-Emission (SASE) is considered. A first test is foreseen at a larger photon wavelength. The overall design as well as both electron and photon beam properties will be discussed. To reach the desired photon wavelength, the main components that have to be added to the TTF are: (a) a low emittance rf gun including space charge compensation (b) a two stage bunch compressor increasing the peak bunch current from 100 A up to 2500 A (c) four more accelerating modules to achieve 1 GeV beam energy (d) a 25 m long undulator (period length 27 mm, peak field 0.5 T) The average brillance will be larger than 1-10{sup 22}photons/s/mm{sup 2}/mrad{sup 2}/0.1%. Each 800 {mu}s long pulse will contain up to 7200 equidistant bunches. The repetition frequency of the linac is 10 Hz.

  16. Supersymmetric interpretation of high-Q{sup 2} DESY HERA events and other related issues

    SciTech Connect

    Kim, J.E. |; Ko, P.

    1998-01-01

    In the framework of the minimal supersymmetric standard model with R-parity violation, the high-Q{sup 2} DESY HERA events can be interpreted as the s-channel production of a single top-squark of M{sub {tilde t}{sub 1}}{approx}200 GeV, whose dominant decay modes are assumed to be the R-parity violating e{sup +}+d and the R-parity conserving {chi}{sup +}+b. Assuming only one coupling {ovr {lambda}{sup {prime}}{sub 131}} is nonzero of order {approximately}0.04{minus}0.12, we find that (i) the high-Q{sup 2} HERA events can be understood as an s-channel top squark production with a subsequent decay into e{sup +}+(singlejet), and (ii) the ALEPH 4-jet events can be understood in the scenario suggested by Carena {ital et al.} We briefly discuss other physics signals of this scenario at other places such as HERA, CERN LEP200, and Fermilab Tevatron. The best test for our scenario is to observe the top squark decay into {chi}{sup +}+b followed by {chi}{sup +}{r_arrow}{tilde e}{sup +}+{nu}{sub e} and {tilde e}{sup +}{r_arrow}q+{bar q}{prime} via the R-parity violating coupling. {copyright} {ital 1997} {ital The American Physical Society}

  17. Metabolic profiling directly from the Petri dish using nanoDESI imaging mass spectrometry

    PubMed Central

    Watrous, Jeramie; Roach, Patrick; Heath, Brandi; Alexandrov, Theodore; Laskin, Julia; Dorrestein, Pieter C.

    2014-01-01

    Understanding molecular interaction pathways in complex biological systems constitutes a treasure trove of knowledge that might facilitate the specific, chemical manipulation of the countless microbiological systems that occur throughout our world. However, there is a lack of methodologies that allow the direct investigation of chemical gradients and interactions in living biological systems, in real time. Here we report the use of nanospray desorption electrospray ionization (nanoDESI) imaging mass spectrometry for in vivo metabolic profiling of living bacterial colonies directly from the Petri dish with absolutely no sample preparation needed. Using this technique, we investigated single colonies of Shewanella oneidensis MR-1, Bacillus subtilis 3610, Streptomyces coelicolor A3(2) as well as a mixed biofilm of S. oneidensis MR-1 and B. subtilis 3610. Data from B. subtilis 3610 and S. coelicolor A3(2) provided a means of validation for the method while data from S. oneidensis MR-1 and the mixed biofilm showed a wide range of compounds that this bacterium uses for the dissimilatory reduction of extracellular metal oxides, including riboflavin, iron-bound heme and heme biosynthetic intermediates, and the siderophore putrebactin. PMID:24047514

  18. Transatlantic transport of Fermilab 3.9 GHz cryomodule for TTF/FLASH to DESY

    SciTech Connect

    McGee, M.W.; Vocean, V.; Grimm, C.; Schappert, W.; /Fermilab

    2008-06-01

    In an exchange of technology agreement, Fermilab built and will deliver a 3.9 GHz (3rd harmonic) cryomodule to DESY to be installed in the TTF/FLASH beamline. This cryomodule delivery will involve a combination of flatbed air ride truck and commercial aircraft transport to Hamburg Germany. A description of the isolation and damping systems that maintain alignment during transport and protect fragile components is provided. Initially, transport and corresponding alignment stability studies were performed in order to assess the risk associated with transatlantic travel of a fully assembled cryomodule. Shock loads were applied to the cryomodule by using a coldmass mockup to prevent subjecting actual critical components (such as the cavities and input couplers) to excessive forces. Accumulative and peak shock loads were applied through over-the-road testing and using a pendulum hammer apparatus, respectively. Finite Element Analysis (FEA) studies were implemented to define location of instrumentation for transport studies and provide modal frequencies and shapes. Shock and vibration measurement results of transport studies and stabilization techniques are discussed.

  19. Probing Molecular Composition of Soil Organic Matter with Nanospray Desorption Electrospray Ionization (nano-DESI) High-Resolution Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Laskin, A.; Laskin, J.; Nizkorodov, S.

    2014-12-01

    The standard techniques for chemical analysis of SOM often lack molecular detail necessary for characterization of the key classes of compounds in soil necessary for the development of predictive models. High-resolution mass spectrometry (HR-MS) combined with tandem mass spectrometry (MSn) is the technique of choice for structural characterization of individual molecules in complex environmental mixtures because HR-MS enables chemical characterization of complex samples with a level of detail that is not attainable using other techniques. However, the power of this technique for characterization of SOM has been demonstrated only recently. Nanospray desorption ionization (nano-DESI) bypasses the traditional SOM extraction steps and provides the unique ability to record SOM mass spectra from small whole-soil samples. Nano-DESI benefits from a short sample preparation time (dozens of samples can be analyzed in a matter of hours by simply swapping the samples on the sample holder and running a pre-programmed positioning stage protocol), fast analysis time (useful signal results from only a few seconds of contact between the sample and the liquid bridge), and highly sensitive detection (less than 10 ng of organic mass is required for analysis). The nano-DESI method is minimally destructive. Only a small spot (typically < 1mm) is in contact with the solvent bridge during the analysis, and the rest of the sample is unaffected. Sampling over multiple spots on the same sample in effect replaces the need to extract a large amount of SOM from a soil sample in order to homogenize it, as done in conventional soil analysis. Another critical advantage of nano-DESI is that it makes it possible to observe organic components that cannot be easily detected using traditional ESI method (69). Specifically, by minimizing the residence time of analyte in the spray solvent, it enables detection and structural characterization of chemically labile molecules in environmental samples, which

  20. Direct Visualization of Neurotransmitters in Rat Brain Slices by Desorption Electrospray Ionization Mass Spectrometry Imaging (DESI - MS)

    NASA Astrophysics Data System (ADS)

    Fernandes, Anna Maria A. P.; Vendramini, Pedro H.; Galaverna, Renan; Schwab, Nicolas V.; Alberici, Luciane C.; Augusti, Rodinei; Castilho, Roger F.; Eberlin, Marcos N.

    2016-10-01

    Mass spectrometry imaging (MSI) of neurotransmitters has so far been mainly performed by matrix-assisted laser desorption/ionization (MALDI) where derivatization reagents, deuterated matrix and/or high resolution, or tandem MS have been applied to circumvent problems with interfering ion peaks from matrix and from isobaric species. We herein describe the application of desorption electrospray ionization mass spectrometry imaging (DESI)-MSI in rat brain coronal and sagittal slices for direct spatial monitoring of neurotransmitters and choline with no need of derivatization reagents and/or deuterated materials. The amino acids γ-aminobutyric (GABA), glutamate, aspartate, serine, as well as acetylcholine, dopamine, and choline were successfully imaged using a commercial DESI source coupled to a hybrid quadrupole-Orbitrap mass spectrometer. The spatial distribution of the analyzed compounds in different brain regions was determined. We conclude that the ambient matrix-free DESI-MSI is suitable for neurotransmitter imaging and could be applied in studies that involve evaluation of imbalances in neurotransmitters levels.

  1. MS-desi, a desiccation-related protein in the floral nectar of the evergreen velvet bean (Mucuna sempervirens Hemsl): molecular identification and characterization.

    PubMed

    Zha, Hong-Guang; Liu, Tao; Zhou, Jing-Jiang; Sun, Hang

    2013-07-01

    Plant desiccation-related proteins (DRPs) were first identified as pcC13-62 from the resurrection plant Craterostigma plantagineum and it has been suggested they are involved in plant desiccation tolerance. We identified and characterized a plant DRP, which we called MS-desi, in the floral nectar of a subtropical bean species, Mucuna sempervirens (MS). MS-desi is a major nectar protein (nectarin) of the bean plant and expresses exclusively in the stylopodium, where the nectary is located. The full-length MS-desi gene encodes for a protein of 306 amino acids with a molecular mass of 33,248 Da, and possesses a ferritin-like domain and a signal peptide of 30 amino acids. Structural and phylogenetic analysis demonstrated MS-desi has high similarity to members of the plant DRPs, including pcC 13-62 protein. MS-desi has a similar hydropathy profile to that of pcC13-62 with a grand average of hydropathy index of 0.130 for MS-desi and 0.106 for pcC13-62 protein, which is very different from those of dehydrins and late embryogenesis abundant proteins. The protein's secondary structures, both predicted from the amino acid sequence and directly analysed by far UV circular dichroism, showed that MS-desi is mainly composed of alpha helices and is relatively temperature dependent. The structure change is reversible within a wide range of temperatures. Purified MS-desi and raw MS floral nectar showed dose-dependent citrate synthase inhibition activity, but insensitivity to lactate dehydrogenase, suggesting that, unlike dehydrins, it does not act as a chaperone. The overall results constitute, to our knowledge, the first study on a desiccation-related protein in plant floral nectar. PMID:23568404

  2. Seasonal prevalence of gastrointestinal parasites in desi fowl (Gallus gallus domesticus) in and around Gannavaram, Andhra Pradesh.

    PubMed

    Sreedevi, C; Jyothisree, Ch; Rama Devi, V; Annapurna, P; Jeyabal, L

    2016-09-01

    A study was carried out to know the prevalence of gastrointestinal parasites in desi fowl in and nearby villages of Gannavaram, Andhra Pradesh for a period of 1 year. Screening of 492 samples comprising faecal samples and gastrointestinal tracts from freshly slaughtered desi birds at local poultry shops and samples from post mortem examinations at NTR College of Veterinary Science, Gannavaram revealed 63.21 % of gastrointestinal parasites. Faecal samples were examined by floatation technique using salt solution and samples positive for coccidian oocysts were sporulated in 2.5 % potassium dichromate solution for species identification. Adult worms were identified after routine processing and mounting. The species identified includes Davainea proglottina, Raillietina cesticillus and Raillietina echinobothrida in cestodes (32.47 %), Ascaridia galli, Capillaria annulata, Heterakis gallinarum in nematodes (39.87 %), Eimeria tenella, Eimeria acervulina and Eimeria necatrix in Eimeria spp. (39.87 %). Ascaridia galli and R. cesticillus and A. galli and Eimeria spp. were common in mixed infection (12.86 %). Ascaridia galli was the more prevalent species. No trematode parasite was identified during the study period. Significant (p = 0.001) relationship between the seasonality and prevalence of gastrointestinal parasites was observed (χ2 = 17.46, df = 2). Data revealed high prevalence in rainy season (43.41 %) followed by summer (38.91 %) and winter (17.68 %) seasons for all parasites except for A. galli and C. annulata infections which were higher in summer season. Results indicated high prevalence of gastrointestinal parasites in desi fowl in study area emphasizing the need of improved management practices of backyard poultry. PMID:27605762

  3. Studies on the effectiveness of oral pellet vaccine in improving egg production and egg quality in desi chicken

    PubMed Central

    Reetha, T. Lurthu; Rajeswar, J. Johnson; Harikrishnan, T. J.; Sukumar, K.; Srinivasan, P.; Kirubakaran, J. John

    2016-01-01

    Aim: To study the effect of Newcastle disease (ND) oral pellet vaccine in egg production and egg quality in desi chicken. Materials and Methods: The study was conducted at Veterinary University Training and Research Centre, Tiruchirapalli, Tamil Nadu. A total of 48-day-old desi chicks obtained from a private hatchery in Namakkal, Tamil Nadu, were maintained under cage system of rearing up to 52 weeks of age as per standard management practices. All the 48 chicks were divided into six groups having eight chicks in each group were subjected to different treatment regimes. All the birds were challenged at 52 weeks of age with 0.5 ml dose of 104.0 egg infectious dose 50 virulent ND field virus. 10 eggs from each group were randomly collected during the last 3 days of 8 weeks interval period from 28 to 52 weeks of age and were used to measure the egg quality parameters. The production performance of each group was assessed at 4 weeks interval period from 25 to 52 weeks of age. Results: In all the six treatment groups with respect to egg production, no significant difference (p≥0.05) was noticed from 25 to 52 weeks of age. Similarly, in egg weight, egg shape index and specific gravity, no significant difference (p≥0.05) was noticed from 28 to 52 weeks of age. Conclusion: From this study, it is concluded that the administration of ND oral pellet vaccine to desi chicken does not affect the egg production performance, egg weight, egg shape index, and specific gravity of egg. PMID:27651681

  4. Studies on the effectiveness of oral pellet vaccine in improving egg production and egg quality in desi chicken

    PubMed Central

    Reetha, T. Lurthu; Rajeswar, J. Johnson; Harikrishnan, T. J.; Sukumar, K.; Srinivasan, P.; Kirubakaran, J. John

    2016-01-01

    Aim: To study the effect of Newcastle disease (ND) oral pellet vaccine in egg production and egg quality in desi chicken. Materials and Methods: The study was conducted at Veterinary University Training and Research Centre, Tiruchirapalli, Tamil Nadu. A total of 48-day-old desi chicks obtained from a private hatchery in Namakkal, Tamil Nadu, were maintained under cage system of rearing up to 52 weeks of age as per standard management practices. All the 48 chicks were divided into six groups having eight chicks in each group were subjected to different treatment regimes. All the birds were challenged at 52 weeks of age with 0.5 ml dose of 104.0 egg infectious dose 50 virulent ND field virus. 10 eggs from each group were randomly collected during the last 3 days of 8 weeks interval period from 28 to 52 weeks of age and were used to measure the egg quality parameters. The production performance of each group was assessed at 4 weeks interval period from 25 to 52 weeks of age. Results: In all the six treatment groups with respect to egg production, no significant difference (p≥0.05) was noticed from 25 to 52 weeks of age. Similarly, in egg weight, egg shape index and specific gravity, no significant difference (p≥0.05) was noticed from 28 to 52 weeks of age. Conclusion: From this study, it is concluded that the administration of ND oral pellet vaccine to desi chicken does not affect the egg production performance, egg weight, egg shape index, and specific gravity of egg.

  5. "Loops and Legs in Quantum Field Theory", 12th DESY Workshop on Elementary Particle Physics

    NASA Astrophysics Data System (ADS)

    excellent working conditions. We would like to thank Martina Mende for all her work in helping to organize this conference. Details of the conference can be found under: https://indico.desy.de/conferenceDisplay.py?confId=8107

  6. Wie wissenschaftlich ist der Evolutionsgedanke?

    NASA Astrophysics Data System (ADS)

    Vollmer, Gerhard

    Darwin war ein besonnener Mann; alles Aufsehen war ihm zuwider. Trotzdem hat er eine Revolution ausgelöst, deren Wirkung nicht auf die Biologie beschränkt blieb. Seine Theorie lässt sich in fünf Teiltheorien zerlegen, die sich durch die Begriffe Artenwandel, Verwandtschaft alles Lebendigen und gemeinsamer Ursprung, Artenaufspaltung und Artenvielfalt, Gradualismus, natürliche Auslese charakterisieren lassen. Dadurch wurden mehrere religiöse und weitere weltanschauliche Überzeugungen in Frage gestellt. Deshalb wird die Evolutionstheorie auch heute noch vielfach kritisiert, ja bekämpft. Die Vorwürfe lassen sich ordnen nach den Kriterien, mit denen wir erfahrungswissenschaftliche Theorien beurteilen. Haltbar ist daran nur, dass es für die Evolutionstheorie zwar beliebig viele Bestätigungen gibt, aber nur wenige Widerlegungsmöglichkeiten. Durch die neuerdings entwickelten und durchgeführten Evolutionsexperimente ist die empirische Situation allerdings deutlich besser geworden. Am (erfahrungs)wissenschaftlichen Charakter der Evolutionstheorie besteht deshalb kein Zweifel.

  7. An Assessment of the Utility of Tissue Smears in Rapid Cancer Profiling with Desorption Electrospray Ionization Mass Spectrometry (DESI-MS)

    NASA Astrophysics Data System (ADS)

    Woolman, Michael; Tata, Alessandra; Bluemke, Emma; Dara, Delaram; Ginsberg, Howard J.; Zarrine-Afsar, Arash

    2016-10-01

    Mass spectrometry imaging with desorption electrospray ionization mass spectrometry (DESI-MS) is used to characterize cancer from ex vivo slices of tissues. The process is time-consuming. The use of tissue smears for DESI-MS analysis has been proposed as it eliminates the time required to snap-freeze and section the tissue. To assess the utility of tissue smears for rapid cancer characterization, principal component analysis (PCA) was performed to evaluate the concordance between DESI-MS profiles of breast cancer from tissue slices and smears prepared on various surfaces. PCA suggested no statistical discrimination between DESI-MS profiles of tissue sections and tissue smears prepared on glass, polytetrafluoroethylene (PTFE), and porous PTFE. However, the abundances of cancer biomarker ions varied between sections and smears, with DESI-MS analysis of tissue sections yielding higher ion abundances of cancer biomarkers compared with smears. Coefficient of variance (CV) analysis suggests DESI-MS profiles from tissue smears are as reproducible as the ones from tissue sections. The limit of detection with smear samples from single pixel analysis is comparable to tissue sections that average the signal from a tissue area of 0.01 mm2. The smears prepared on the PTFE surface possessed a higher degree of homogeneity compared with the smears prepared on the glass surface. This allowed single MS scans (~1 s) from random positions across the surface of the smear to be used in rapid cancer typing with good reproducibility, providing pathologic information for cancer typing at speeds suitable for clinical utility.

  8. Desorption Electrospray Ionization (DESI) Mass Spectrometric Imaging of the Distribution of Rohitukine in the Seedling of Dysoxylum binectariferum Hook. F

    PubMed Central

    Mohana Kumara, Patel; Srimany, Amitava; Arunan, Suganya; Ravikanth, Gudasalamani; Uma Shaanker, Ramanan; Pradeep, Thalappil

    2016-01-01

    Ambient ionization mass spectrometric imaging of all parts of the seedling of Dysoxylum binectariferum Hook. f (Meliaceae) was performed to reconstruct the molecular distribution of rohitukine (Rh) and related compounds. The species accumulates Rh, a prominent chromone alkaloid, in its seeds, fruits, and stem bark. Rh possesses anti-inflammatory, anti-cancer, and immuno-modulatory properties. Desorption electrospray ionization mass spectrometry imaging (DESI MSI) and electrospray ionization (ESI) tandem mass spectrometry (MS/MS) analysis detected Rh as well as its glycosylated, acetylated, oxidized, and methoxylated analogues. Rh was predominantly distributed in the main roots, collar region of the stem, and young leaves. In the stem and roots, Rh was primarily restricted to the cortex region. The identities of the metabolites were assigned based on both the fragmentation patterns and exact mass analyses. We discuss these results, with specific reference to the possible pathways of Rh biosynthesis and translocation during seedling development in D. binectariferum. PMID:27362422

  9. Monitoring the FLASH Cryomodule Transportation from DESY Hamburg to CEA Saclay: Coupler Contact, Vacuum, Acceleration and Vibration Analysis

    SciTech Connect

    Barbanotti, S.; Bosotti, A.; Fusetti, M.; Michelato, P.; Bertolini, A.; Berry, S.; Dorlot, M.; Madec, C.; Napoly, O.; Amirikas, R.; Boehnert, M.; /DESY /Fermilab

    2009-05-01

    With a view to the series production of one hundred, 12 m long XFEL 1.3 GHz cryomodules and their transportation from the assembly site at CEA Saclay (F) to the installation site at DESY Hamburg (D) a test transportation of a FLASH cryomodule has been performed, in the condition foreseen for the mass transportation. The present study examines the stresses induced on the module and verifies the damping capabilities of the transport frame in order to minimize risk of damage to the most critical components. During the transportation, acceleration and vibration have been monitored as well as coupler antenna contacts and vacuum performances. This paper describes the analysis performed and compares those results to the data of a similar transportation study at Fermilab for the CM1 cryomodule.

  10. 21 CFR 330.12 - Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI).

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 5 2011-04-01 2011-04-01 false Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI). 330.12 Section 330.12 Food and Drugs FOOD AND DRUG... Register concerning previously unpublished OTC drugs reviewed by the National Academy of...

  11. Electrospun Nanofiber Mats as "Smart Surfaces" for Desorption Electrospray Ionization Mass Spectrometry (DESI MS)-Based Analysis and Imprint Imaging.

    PubMed

    Hemalatha, R G; Ganayee, Mohd Azhardin; Pradeep, T

    2016-06-01

    In this paper, desorption electrospray ionization mass spectrometry (DESI MS)-based molecular analysis and imprint imaging using electrospun nylon-6 nanofiber mats are demonstrated for various analytical contexts. Uniform mats of varying thicknesses composed of ∼200 nm diameter fibers were prepared using needleless electrospinning. Analytical applications requiring rapid understanding of the analytes in single drops, dyes, inks, and/or plant extracts incorporated directly into the nanofibers are discussed with illustrations. The possibility to imprint patterns made of printing inks, plant parts (such as petals, leaves, and slices of rhizomes), and fungal growth on fruits with their faithful reproductions on the nanofiber mats is illustrated with suitable examples. Metabolites were identified by tandem mass spectrometry data available in the literature and in databases. The results highlight the significance of electrospun nanofiber mats as smart surfaces to capture diverse classes of compounds for rapid detection or to imprint imaging under ambient conditions. Large surface area, appropriate chemical functionalities exposed, and easiness of desorption due to weaker interactions of the analyte species are the specific advantages of nanofibers for this application. PMID:27159150

  12. Design considerations and analysis of potential applications of a high power ultraviolet FEL at the TESLA test facility at DESY

    NASA Astrophysics Data System (ADS)

    Pagani, C.; Saldin, E. L.; Schneidmiller, E. A.; Yurkov, M. V.

    1999-02-01

    A possibility of constructing a high power ultraviolet free electron laser at the TESLA test facility at DESY is discussed. The proposed facility consists of a tunable master oscillator (P av˜10 mW, P peak˜10 kW, λ≃200-350 nm) and an FEL amplifier with a tapered undulator. The average and peak radiation power at the exit of the FEL amplifier is about 7 kW and 220 GW, respectively. Installation of such a facility can significantly extend scientific potential of the TESLA test facility. The UV free electron laser can be used to construct a polarized, monochromatic gamma-source with the ultimate yield up to 10 12 gamma-quanta per second and the maximal energy of about 100 MeV. An intensive gamma-source can also form the base for constructing the test facility for the TESLA positron generation system. Another accelerator application of the proposed facility is verification of the main technical solutions for the laser and the optical system to be used in the gamma-gamma option of the TESLA collider. A high average power UV laser is also promising for industrial applications.

  13. Tuning of 2.998 GHz S-band hybrid buncher for injector upgrade of LINAC II at DESY

    NASA Astrophysics Data System (ADS)

    Nie, Y. C.; Liebig, C.; Hüning, M.; Schmitz, M.

    2014-10-01

    The injector upgrade of LINAC II at DESY aims to improve its reliability and mitigate the radiological activation of components due to electron loss at relatively high energy of hundreds of MeV. Therefore, a 2.998 GHz hybrid buncher has been developed and will be installed in between an existing 2.998 GHz pre-buncher and LINAC II. It comprises a 1-cell standing-wave (SW) section for rapid electron acceleration and a 13-cells traveling-wave (TW) section for further beam bunching and acceleration. This paper focuses on its radio-frequency tuning procedure. The tuning strategy combines a non-resonant bead-pull measurement of complex electric field and a linear model for local reflection coefficient calculation. It is demonstrated that imaginary part of the local reflection coefficient represents the field distribution straightforwardly, based on which the structure can be tuned from cell to cell. During tuning, special attention has been paid to the field enhancement in the SW section to ensure its beam-capturing capability. Field amplitude and phase, global and local reflection coefficients have been analyzed for two different frequencies simultaneously, i.e. the intrinsic frequency of the structure and the target frequency, to avoid over-tuning. The tuning result is satisfying. For the target frequency, field unflatness of the TW section has been reduced from ±9% to ±4%, and field in the SW section has been enhanced significantly. Meanwhile, in the TW section, the deviation of phase advances between adjacent cells from the nominal value 120° has been reduced from the range ±5° to ±2°. By using ASTRA simulation, it has been verified that the residual detuning of the structure is acceptable in view of the beam dynamics performance.

  14. Free-electron laser at the TESLA Test Facility at DESY: toward a tunable short-pulsed soft x-ray source

    NASA Astrophysics Data System (ADS)

    Gerth, Christopher

    2001-12-01

    A high peak current, low emittance, short pulse electron beam can produce intense, laser-like radiation in a single pass through a long periodic magnetic structure. The construction of such free-electron lasers (FELs) based on self-amplified spontaneous emission (SASE) has become feasible by recent advances in accelerator technologies. Since SASE FELs do not require any optical components they are promising sources for the generation of intense, sub- picosecond laser pulses which are continuously tunable over a wide wavelength range in the vacuum ultraviolet (VUV) and X-ray region. In the first phase of the VUV-FEL (phase I) at the TESLA Test Facility at DESY, SASE was achieved for the first time in the VUV at wavelengths between 80 and 180 nm. The concept of the VUV FEL at DESY and first experimental results are presented. The second phase of the TESLA Test Facility (phase II), which includes an increase of the electron beam energy to 1 GeV, aims at the construction of a SASE FEL operating in the soft X-ray region. An overview of the current status and the activities toward a soft X-ray FEL user facility is given.

  15. Investigations of irradiation effects on electronic components to be used in VUV-FEL and X-FEL facilities at DESY

    NASA Astrophysics Data System (ADS)

    Rybka, Dominik; Kalicki, Arkadiusz; Pozniak, Krzysztof; Romaniuk, Ryszard; Mukherjee, Bhaskar; Simrock, Stefan

    2005-09-01

    Electronic components during High Energy Physics experiments are exposed to high level of radiation. Radiation environment causes many problems to electronic devices. The goal of several experiments done at DESY (Deutsches Elektronen Synchrotron, Hamburg) was to investigate nature of irradiation effects, caused damages and possible techniques of mitigation. One of aspects of experiments is radiation measurements. The propositions of building radiation monitoring system, using different semiconductor components, are presented. Second aspect is radiation tolerance. Different electronic devices were tested: FPGA chips, CCD sensors, bubble dosimeters and LED diodes. Components were irradiated in TESLA Test Facility 2 tunnel and in laboratory using 241Am/Be neutron source. The results of experiments are included and discussed.

  16. Probing Molecular Associations of Secondary Organic Aerosol (SOA) Samples from CalNex 2010 with Nano-DESI High-Resolution Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    O'Brien, R. E.; Nguyen, T. B.; Laskin, A.; Laskin, J.; Hayes, P. L.; Liu, S.; Jimenez, J. L.; Russell, L. M.; Nizkorodov, S.; Goldstein, A. H.

    2012-12-01

    This project focuses on analyzing the identities of molecules that comprise oligomers in size resolved aerosol fractions. Since oligomers are generally too large and polar to be measured by typical GC/MS analysis, soft ionization with high resolution mass spectrometry is used to extend the range of observable compounds. Samples collected during CalNex 2010 in Bakersfield and Los Angeles and secondary organic aerosol (SOA) produced in a photochemical chamber by photooxidation of diesel (DSL) fuel and isoprene (ISO) under humid, high-NOx conditions have been analyzed with nanospray desorption electrospray ionization (nano-DESI) and a high-resolution Orbitrap mass spectrometer. The nano-DESI is a soft ionization technique that allows molecular ions to be observed and the Orbitrap has sufficient resolution to determine the elemental composition of almost all species above the detection limit. A large fraction of SOA is made up of high molecular weight oligomers which are thought to form through acid catalyzed reactions of photo-chemically processed volatile organic compounds (VOC). The formation of oligomers is influenced by the VOCs available, the amount of atmospheric sulfate and nitrate, and the magnitude of photo-chemical processing, among other potential influences. We present the elemental composition of chemical species in size resolved SOA samples with six-hour time resolution, providing the first time resolved data set for the study of these oligomers in atmospheric samples. We present a comparison of the degree of overlap between the ambient and chamber experiments as a novel method to examine sources for this fraction of SOA. Possible formation pathways and sources of observed compounds are analyzed by comparison to other concurrent measurements at the site.

  17. High throughput screening of high-affinity ligands for proteins with anion-binding sites using desorption electrospray ionization (DESI) mass spectrometry.

    PubMed

    Lu, Xin; Ning, Baoming; He, Dacheng; Huang, Lingyun; Yue, Xiangjun; Zhang, Qiming; Huang, Haiwei; Liu, Yang; He, Lan; Ouyang, Jin

    2014-03-01

    A high throughput screening system involving a linear ion trap (LTQ) analyzer, a house-made platform and a desorption electrospray ionization (DESI) source was established to screen ligands with a high affinity for proteins with anion-binding sites. The complexes were analyzed after incubation, ultrafiltration, washing, and displacement. A new anionic region inhibited dissociation (ARID) mechanism that was suitable for a protein with anion-binding site was proposed. We utilized the differences in detectable dissociation of protein-ligand complexes, combined with displacement experiments, to distinguish free ligands displaced from anion-binding sites from liberated ligands dissociated from nonspecific interactions. The method was validated by α1-acid glycoprotein (AGP) and (R), (S)-amlodipine. Site-specific enantioselectivity shown in our experiments was consistent with earlier studies. Obtaining all of the qualitative information of 15*3 samples in 2.3 min indicates that the analysis process is no longer the time-limiting step in the initial stage of drug discovery. Quantitative information verified that our method was at least a semiquantitative method.

  18. High Throughput Screening of High-Affinity Ligands for Proteins with Anion-Binding Sites using Desorption Electrospray Ionization (DESI) Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Lu, Xin; Ning, Baoming; He, Dacheng; Huang, Lingyun; Yue, Xiangjun; Zhang, Qiming; Huang, Haiwei; Liu, Yang; He, Lan; Ouyang, Jin

    2014-03-01

    A high throughput screening system involving a linear ion trap (LTQ) analyzer, a house-made platform and a desorption electrospray ionization (DESI) source was established to screen ligands with a high affinity for proteins with anion-binding sites. The complexes were analyzed after incubation, ultrafiltration, washing, and displacement. A new anionic region inhibited dissociation (ARID) mechanism that was suitable for a protein with anion-binding site was proposed. We utilized the differences in detectable dissociation of protein-ligand complexes, combined with displacement experiments, to distinguish free ligands displaced from anion-binding sites from liberated ligands dissociated from nonspecific interactions. The method was validated by α1-acid glycoprotein (AGP) and (R), (S)-amlodipine. Site-specific enantioselectivity shown in our experiments was consistent with earlier studies. Obtaining all of the qualitative information of 15*3 samples in 2.3 min indicates that the analysis process is no longer the time-limiting step in the initial stage of drug discovery. Quantitative information verified that our method was at least a semiquantitative method.

  19. Probing Molecular Associations of Field-Collected and Laboratory-Generated SOA with Nano-DESI High-Resolution Mass Spectrometry

    SciTech Connect

    O'Brien, Rachel E.; Nguyen, Tran B.; Laskin, Alexander; Laskin, Julia; Hayes, Patrick L.; Liu, Shang; Jimenez, Jose L.; Russell, Lynn M.; Nizkorodov, Sergey; Goldstein, Allen H.

    2013-01-30

    Aerosol samples from the 2010 CalNex field study in Bakersfield (BF) and Los Angeles (LA) were analyzed using positive mode nanospray-desorption electrospray ionization mass spectrometry (nano-DESI-MS). Secondary organic aerosol (SOA) produced in a photochemical chamber by photooxidation of diesel (DSL) fuel and isoprene (ISO) under humid, high-NOx conditions, was analyzed for comparison. Three groups of organic compounds with zero, one, or two nitrogen atoms in their molecular formulas (0N, 1N, 2N) were compared in detail. The composition of ambient SOA exhibited greater overlap with DSL than with ISO. The overlap of the chamber experiments with the BF data was relatively consistent throughout the day while the overlap with LA data increased significantly in the noon-6pm sample, consistent with the SOA plume arriving from downtown Los Angeles. BF samples were more oxidized, contained more organic nitrogen, and had more overlap with the chamber data compared to LA samples. The addition of gaseous ammonia (NH3) to the DSL experiment was necessary to generate many of the 2N compounds observed in BF. This analysis demonstrates that DSL and ISO were important sources but cannot account for all of the observed ambient compounds indicating that other sources of organics were also likely important.

  20. Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY)

    PubMed Central

    Blanchet, Clement E.; Spilotros, Alessandro; Schwemmer, Frank; Graewert, Melissa A.; Kikhney, Alexey; Jeffries, Cy M.; Franke, Daniel; Mark, Daniel; Zengerle, Roland; Cipriani, Florent; Fiedler, Stefan; Roessle, Manfred; Svergun, Dmitri I.

    2015-01-01

    A high-brilliance synchrotron P12 beamline of the EMBL located at the PETRA III storage ring (DESY, Hamburg) is dedicated to biological small-angle X-ray scattering (SAXS) and has been designed and optimized for scattering experiments on macromolecular solutions. Scatterless slits reduce the parasitic scattering, a custom-designed miniature active beamstop ensures accurate data normalization and the photon-counting PILATUS 2M detector enables the background-free detection of weak scattering signals. The high flux and small beam size allow for rapid experiments with exposure time down to 30–50 ms covering the resolution range from about 300 to 0.5 nm. P12 possesses a versatile and flexible sample environment system that caters for the diverse experimental needs required to study macromolecular solutions. These include an in-vacuum capillary mode for standard batch sample analyses with robotic sample delivery and for continuous-flow in-line sample purification and characterization, as well as an in-air capillary time-resolved stopped-flow setup. A novel microfluidic centrifugal mixing device (SAXS disc) is developed for a high-throughput screening mode using sub-microlitre sample volumes. Automation is a key feature of P12; it is controlled by a beamline meta server, which coordinates and schedules experiments from either standard or nonstandard operational setups. The integrated SASFLOW pipeline automatically checks for consistency, and processes and analyses the data, providing near real-time assessments of overall parameters and the generation of low-resolution models within minutes of data collection. These advances, combined with a remote access option, allow for rapid high-throughput analysis, as well as time-resolved and screening experiments for novice and expert biological SAXS users. PMID:25844078

  1. Lifelong Learning in the Information Age: Organizing Net-Based Learning and Teaching Systems. Wissenschaftliche Fachbibliothek.

    ERIC Educational Resources Information Center

    Finke, Wolfgang F.

    This book examines lifelong learning in the Information Age and the role of higher education (HE) in providing the educational services needed by lifelong learners. The following are among the topics discussed in the book's eight chapters: (1) changes in HE (repercussions of globalization in the educational sector; competition in higher learning;…

  2. Hostile Times: Desi College Students Cope with Hate

    ERIC Educational Resources Information Center

    Isler, Hilal Nakiboglu

    2006-01-01

    The attacks of terror carried out on September 11, 2001 gave rise to waves of hate-fueled violence across the country. It has been argued that the attacks and the subsequent, current context of war have resulted in a heightened sense of American intolerance. They have led to discernable shifts in how certain minorities are perceived and treated in…

  3. One drop chemical derivatization--DESI-MS analysis for metabolite structure identification.

    PubMed

    Lubin, Arnaud; Cabooter, Deirdre; Augustijns, Patrick; Cuyckens, Filip

    2015-07-01

    Structural elucidation of metabolites is an important part during the discovery and development process of new pharmaceutical drugs. Liquid Chromatography (LC) in combination with Mass Spectrometry (MS) is usually the technique of choice for structural identification but cannot always provide precise structural identification of the studied metabolite (e.g. site of hydroxylation and site of glucuronidation). In order to identify those metabolites, different approaches are used combined with MS data including nuclear magnetic resonance, hydrogen/deuterium exchange and chemical derivatization followed by LC-MS. Those techniques are often time-consuming and/or require extra sample pre-treatment. In this paper, a fast and easy to set up tool using desorption electrospray ionization-MS for metabolite identification is presented. In the developed method, analytes in solution are simply dried on a glass plate with printed Teflon spots and then a single drop of derivatization mixture is added. Once the spot is dried, the derivatized compound is analyzed. Six classic chemical derivatizations were adjusted to work as a one drop reaction and applied on a list of compounds with relevant functional groups. Subsequently, two successive reactions on a single spot of amoxicillin were tested and the methodology described was successfully applied on an in vitro incubated alprazolam metabolite. All reactions and analyses were performed within an hour and gave useful structural information by derivatizing functional groups, making the method a time-saving and efficient tool for metabolite identification if used in addition or in some cases as an alternative to common methods.

  4. Vibration measurements of high-heat-load monochromators for DESY PETRA III extension.

    PubMed

    Kristiansen, Paw; Horbach, Jan; Döhrmann, Ralph; Heuer, Joachim

    2015-07-01

    The requirement for vibrational stability of beamline optics continues to evolve rapidly to comply with the demands created by the improved brilliance of the third-generation low-emittance storage rings around the world. The challenge is to quantify the performance of the instrument before it is installed at the beamline. In this article, measurement techniques are presented that directly and accurately measure (i) the relative vibration between the two crystals of a double-crystal monochromator (DCM) and (ii) the absolute vibration of the second-crystal cage of a DCM. Excluding a synchrotron beam, the measurements are conducted under in situ conditions, connected to a liquid-nitrogen cryocooler. The investigated DCM utilizes a direct-drive (no gearing) goniometer for the Bragg rotation. The main causes of the DCM vibration are found to be the servoing of the direct-drive goniometer and the flexibility in the crystal cage motion stages. It is found that the investigated DCM can offer relative pitch vibration down to 48 nrad RMS (capacitive sensors, 0-5 kHz bandwidth) and absolute pitch vibration down to 82 nrad RMS (laser interferometer, 0-50 kHz bandwidth), with the Bragg axis brake engaged.

  5. Vibration measurements of high-heat-load monochromators for DESY PETRA III extension

    PubMed Central

    Kristiansen, Paw; Horbach, Jan; Döhrmann, Ralph; Heuer, Joachim

    2015-01-01

    The requirement for vibrational stability of beamline optics continues to evolve rapidly to comply with the demands created by the improved brilliance of the third-generation low-emittance storage rings around the world. The challenge is to quantify the performance of the instrument before it is installed at the beamline. In this article, measurement techniques are presented that directly and accurately measure (i) the relative vibration between the two crystals of a double-crystal monochromator (DCM) and (ii) the absolute vibration of the second-crystal cage of a DCM. Excluding a synchrotron beam, the measurements are conducted under in situ conditions, connected to a liquid-nitrogen cryocooler. The investigated DCM utilizes a direct-drive (no gearing) goniometer for the Bragg rotation. The main causes of the DCM vibration are found to be the servoing of the direct-drive goniometer and the flexibility in the crystal cage motion stages. It is found that the investigated DCM can offer relative pitch vibration down to 48 nrad RMS (capacitive sensors, 0–5 kHz bandwidth) and absolute pitch vibration down to 82 nrad RMS (laser interferometer, 0–50 kHz bandwidth), with the Bragg axis brake engaged. PMID:26134790

  6. Transverse-coherence properties of the free-electron-laser FLASH at DESY.

    PubMed

    Singer, A; Vartanyants, I A; Kuhlmann, M; Duesterer, S; Treusch, R; Feldhaus, J

    2008-12-19

    A general theoretical approach based on the decomposition of statistical fields into a sum of independently propagating transverse modes was used for the analysis of the coherence properties of the new free-electron laser source FLASH operated at 13.7 nm wavelength. The analysis shows that several transverse modes are contributing to the total radiation field of FLASH. The results of theoretical calculations are compared with measurements using Young's double-slit experiment. The coherence lengths in the horizontal and in the vertical directions 20 m downstream from the source are estimated at 300 and 250 microm, respectively.

  7. Monitoring System for the GRID Monte Carlo Mass Production in the H1 Experiment at DESY

    NASA Astrophysics Data System (ADS)

    Bystritskaya, Elena; Fomenko, Alexander; Gogitidze, Nelly; Lobodzinski, Bogdan

    2014-06-01

    The H1 Virtual Organization (VO), as one of the small VOs, employs most components of the EMI or gLite Middleware. In this framework, a monitoring system is designed for the H1 Experiment to identify and recognize within the GRID the best suitable resources for execution of CPU-time consuming Monte Carlo (MC) simulation tasks (jobs). Monitored resources are Computer Elements (CEs), Storage Elements (SEs), WMS-servers (WMSs), CernVM File System (CVMFS) available to the VO HONE and local GRID User Interfaces (UIs). The general principle of monitoring GRID elements is based on the execution of short test jobs on different CE queues using submission through various WMSs and directly to the CREAM-CEs as well. Real H1 MC Production jobs with a small number of events are used to perform the tests. Test jobs are periodically submitted into GRID queues, the status of these jobs is checked, output files of completed jobs are retrieved, the result of each job is analyzed and the waiting time and run time are derived. Using this information, the status of the GRID elements is estimated and the most suitable ones are included in the automatically generated configuration files for use in the H1 MC production. The monitoring system allows for identification of problems in the GRID sites and promptly reacts on it (for example by sending GGUS (Global Grid User Support) trouble tickets). The system can easily be adapted to identify the optimal resources for tasks other than MC production, simply by changing to the relevant test jobs. The monitoring system is written mostly in Python and Perl with insertion of a few shell scripts. In addition to the test monitoring system we use information from real production jobs to monitor the availability and quality of the GRID resources. The monitoring tools register the number of job resubmissions, the percentage of failed and finished jobs relative to all jobs on the CEs and determine the average values of waiting and running time for the involved GRID queues. CEs which do not meet the set criteria can be removed from the production chain by including them in an exception table. All of these monitoring actions lead to a more reliable and faster execution of MC requests.

  8. Längengrad. Die wahre Geschichte eines einsamen Genies, welches das größte wissenschaftliche Problem seiner Zeit löste.

    NASA Astrophysics Data System (ADS)

    Sobel, D.

    This book is a German translation, by M. Fienbork, from the American original "Longitude", published in 1995. It tells the story of John Harrison (1693 - 1776), the inventor of a chronometer for precise time determination onboard of ships.

  9. Development of a scanning transmission x-ray microscope for the beamline P04 at PETRA III DESY

    NASA Astrophysics Data System (ADS)

    Andrianov, Konstantin; Ewald, Johannes; Nisius, Thomas; Lühl, Lars; Malzer, Wolfgang; Kanngießer, Birgit; Wilhein, Thomas

    2016-01-01

    We present a scanning transmission x-ray microscope (STXM) built on top of our existing modular platform for high resolution imaging experiments. This platform consists of up to three separate vacuum chambers and custom designed piezo stages. These piezo stages are able to move precisely in x-, y- and z-direction, this makes it possible to adjust the components for different imaging modes. During recent experiments the endstation was operated mainly as a transmission x-ray microscope (TXM) [1, 2].

  10. DESI-Detection of early-season invasives (software-installation manual and user's guide version 1.0)

    USGS Publications Warehouse

    Kokaly, Raymond F.

    2011-01-01

    This report describes a software system for detecting early-season invasive plant species, such as cheatgrass. The report includes instructions for installing the software and serves as a user's guide in processing Landsat satellite remote sensing data to map the distributions of cheatgrass and other early-season invasive plants. The software was developed for application to the semi-arid regions of southern Utah; however, the detection parameters can be altered by the user for application to other areas.

  11. Investigation of a direction sensitive sapphire detector stack at the 5 GeV electron beam at DESY-II

    NASA Astrophysics Data System (ADS)

    Karacheban, O.; Afanaciev, K.; Hempel, M.; Henschel, H.; Lange, W.; Leonard, J. L.; Levy, I.; Lohmann, W.; Schuwalow, S.

    2015-08-01

    Extremely radiation hard sensors are needed in particle physics experiments to instrument the region near the beam pipe. Examples are beam halo and beam loss monitors at the Large Hadron Collider, FLASH or XFEL. Currently artificial diamond sensors are widely used. In this paper single crystal sapphire sensors are considered as a promising alternative. Industrially grown sapphire wafers are available in large sizes, are of low cost and, like diamond sensors, can be operated without cooling. Here we present results of an irradiation study done with sapphire sensors in a high intensity low energy electron beam. Then, a multichannel direction-sensitive sapphire detector stack is described. It comprises 8 sapphire plates of 1 cm2 size and 525 μ m thickness, metallized on both sides, and apposed to form a stack. Each second metal layer is supplied with a bias voltage, and the layers in between are connected to charge-sensitive preamplifiers. The performance of the detector was studied in a 5 GeV electron beam. The charge collection efficiency measured as a function of the bias voltage rises with the voltage, reaching about 10% at 095 V. The signal size obtained from electrons crossing the stack at this voltage is about 02200 e, where e is the unit charge. The signal size is measured as a function of the hit position, showing variations of up to 20% in the direction perpendicular to the beam and to the electric field. The measurement of the signal size as a function of the coordinate parallel to the electric field confirms the prediction that mainly electrons contribute to the signal. Also evidence for the presence of a polarisation field was observed.

  12. Desi Women on the Forty Acres: Exploring Intergenerational Issues and Identity Development of South Asian American College Students

    ERIC Educational Resources Information Center

    Ruzicka, Smita Sundaresan

    2011-01-01

    South Asian Americans are one of the fastest growing sub-groups within the Asian American population in the United States today. Between 1960 and 1990, the South Asian American population witnessed an increase of approximately 900% (Leonard, 1997). This increase in population also corresponds with the increase in South Asian American students…

  13. Probing molecular associations of field-collected and laboratory-generated SOA with nano-DESI high-resolution mass spectrometry

    NASA Astrophysics Data System (ADS)

    O'Brien, Rachel E.; Nguyen, Tran B.; Laskin, Alexander; Laskin, Julia; Hayes, Patrick L.; Liu, Shang; Jimenez, Jose L.; Russell, Lynn M.; Nizkorodov, Sergey A.; Goldstein, Allen H.

    2013-01-01

    Aerosol samples from the 2010 CalNex field study in Bakersfield (BF) and Pasadena (LA) were analyzed using positive mode nanospray-desorption electrospray ionization mass spectrometry. Secondary organic aerosol (SOA) produced in a photochemical chamber by photooxidation of diesel (DSL) fuel and isoprene (ISO) under humid, high-NOx conditions, was analyzed for comparison. Three groups of organic compounds with zero, one, or two nitrogen atoms in their molecular formulas (0N, 1N, 2N) were compared in detail. The composition of ambient SOA exhibited greater overlap with DSL than with ISO. The overlap of the chamber experiments with the BF data was relatively consistent throughout the day while the overlap with LA data increased significantly in the noon to 6 P.M. sample, consistent with the SOA plume arriving from downtown Los Angeles. BF samples were more oxidized, contained more organic nitrogen, and had more overlap with the chamber data compared to LA samples. The addition of gaseous ammonia (NH3) to the DSL experiment was necessary to generate many of the 2N compounds observed in BF. This analysis demonstrates that DSL and ISO were important sources but cannot account for all of the observed ambient compounds indicating that other sources of organics were also likely important.

  14. 21 CFR 330.12 - Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI).

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... phenyitoloxamine citrate and zirconium oxide. (iv) Menacyl Tablets, containing aspirin, menadione, and ascorbic... identical, similar and related products (21 CFR 310.6). Deferral of requirements is not appropriate for...

  15. 21 CFR 330.12 - Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI).

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... identical, similar and related products (21 CFR 310.6). Deferral of requirements is not appropriate for the... phenyitoloxamine citrate and zirconium oxide. (iv) Menacyl Tablets, containing aspirin, menadione, and...

  16. 21 CFR 330.12 - Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI).

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... identical, similar and related products (21 CFR 310.6). Deferral of requirements is not appropriate for the... phenyitoloxamine citrate and zirconium oxide. (iv) Menacyl Tablets, containing aspirin, menadione, and...

  17. 21 CFR 330.12 - Status of over-the-counter (OTC) drugs previously reviewed under the Drug Efficacy Study (DESI).

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... identical, similar and related products (21 CFR 310.6). Deferral of requirements is not appropriate for the... phenyitoloxamine citrate and zirconium oxide. (iv) Menacyl Tablets, containing aspirin, menadione, and...

  18. Development and Applications of Liquid Sample Desorption Electrospray Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Zheng, Qiuling; Chen, Hao

    2016-06-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) is a recent advance in the field of analytical chemistry. This review surveys the development of liquid sample DESI-MS (LS-DESI-MS), a variant form of DESI-MS that focuses on fast analysis of liquid samples, and its novel analy-tical applications in bioanalysis, proteomics, and reaction kinetics. Due to the capability of directly ionizing liquid samples, liquid sample DESI (LS-DESI) has been successfully used to couple MS with various analytical techniques, such as microfluidics, microextraction, electrochemistry, and chromatography. This review also covers these hyphenated techniques. In addition, several closely related ionization methods, including transmission mode DESI, thermally assisted DESI, and continuous flow-extractive DESI, are briefly discussed. The capabilities of LS-DESI extend and/or complement the utilities of traditional DESI and electrospray ionization and will find extensive and valuable analytical application in the future.

  19. Function of desiccate in gustatory sensilla of drosophila melanogaster

    PubMed Central

    Kawano, Takeshi; Ryuda, Masasuke; Matsumoto, Hitoshi; Ochiai, Masanori; Oda, Yasunori; Tanimura, Teiichi; Csikos, Gyorge; Moriya, Megumi; Hayakawa, Yoichi

    2015-01-01

    Desiccate (Desi), initially discovered as a gene expressing in the epidermis of Drosophila larvae for protection from desiccation stress, was recently found to be robustly expressed in the adult labellum; however, the function, as well as precise expression sites, was unknown. Here, we found that Desi is expressed in two different types of non-neuronal cells of the labellum, the epidermis and thecogen accessory cells. Labellar Desi expression was significantly elevated under arid conditions, accompanied by an increase in water ingestion by adults. Desi overexpression also promoted water ingestion. In contrast, a knockdown of Desi expression reduced feeding as well as water ingestion due to a drastic decrease in the gustatory sensillar sensitivity for all tested tastants. These results indicate that Desi helps protect insects from desiccation damage by not only preventing dehydration through the integument but also accelerating water ingestion via elevated taste sensitivities of the sensilla. PMID:26610608

  20. Function of desiccate in gustatory sensilla of drosophila melanogaster.

    PubMed

    Kawano, Takeshi; Ryuda, Masasuke; Matsumoto, Hitoshi; Ochiai, Masanori; Oda, Yasunori; Tanimura, Teiichi; Csikos, Gyorge; Moriya, Megumi; Hayakawa, Yoichi

    2015-11-27

    Desiccate (Desi), initially discovered as a gene expressing in the epidermis of Drosophila larvae for protection from desiccation stress, was recently found to be robustly expressed in the adult labellum; however, the function, as well as precise expression sites, was unknown. Here, we found that Desi is expressed in two different types of non-neuronal cells of the labellum, the epidermis and thecogen accessory cells. Labellar Desi expression was significantly elevated under arid conditions, accompanied by an increase in water ingestion by adults. Desi overexpression also promoted water ingestion. In contrast, a knockdown of Desi expression reduced feeding as well as water ingestion due to a drastic decrease in the gustatory sensillar sensitivity for all tested tastants. These results indicate that Desi helps protect insects from desiccation damage by not only preventing dehydration through the integument but also accelerating water ingestion via elevated taste sensitivities of the sensilla.

  1. Supraleitung und Interkontinentalraketen „On-line computing“ zwischen Militär, Industrie und Wissenschaft

    NASA Astrophysics Data System (ADS)

    Knolle, Johannes; Joas, Christian

    Der zweite Weltkrieg und der Kalte Krieg veränderten nicht nur das Verhältnis zwischen Militär, Industrie und Wissenschaft, sondern auch die wissenschaftliche Praxis von Physikern und anderen Wissenschaftlern. In den 1950er Jahren stellte die Entwicklung von Interkontinentalraketen die Auftragnehmer des Militärs in der Industrie vor komplexe Fragestellungen, zu deren Lösung sie auf die Expertise von Wissenschaftlern angewiesen waren. Industrieunternehmen gründeten eigene Forschungseinheiten zur Lösung technischer und wissenschaftlicher Probleme.

  2. Desorption electrospray ionization mass spectrometry of intact bacteria

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Desorption electrospray ionization (DESI) mass spectrometry (MS) was used to differentiate 7 bacterial species based on their measured DESI-mass spectral profile. Both Gram positive and Gram negative bacteria were tested and included Escherichia coli, Staphyloccocus aureus, Enterococcus sp., Bordete...

  3. Desorption electrospray ionization-mass spectrometry of proteins

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Desorption electrospray ionization-mass spectrometry (DESI-MS) was evaluated for the detection of proteins ranging in molecular mass from 12 to 66 kDa. Proteins were uniformly deposited on a solid surface without pretreatment and analyzed with a DESI source coupled to a quadrupole ion trap mass spec...

  4. Von Tondern nach Gotha. Der Astronom Peter Andreas Hansen, 1795 - 1874.

    NASA Astrophysics Data System (ADS)

    Strumpf, M.; Pehlemann, E.; Wolfschmidt, G.

    This companion booklet to an exposition in honor of Peter Andreas Hansen's 200th birthday contains three papers. Contents: 1. Peter Andreas Hansen - Leben und Wirken in Gotha (M. Strumpf). 2. Peter Andreas Hansens wissenschaftliches Werk (E. Pehlemann). 3. Beobachtungsinstrumente der Sternwarte Gotha zur Zeit Hansens (G. Wolfschmidt).

  5. Evolution und Kreationismus im Schulunterricht aus Sicht Großbritanniens. Ist Evolution eine Sache der Akzeptanz oder des Glaubens?

    NASA Astrophysics Data System (ADS)

    Williams, James D.

    Ist Kreationismus eine Weltanschauung oder eine falsche Vorstellung? Ausgehend vom Standpunkt der Naturwissenschaft ist der Unterschied wichtig. Falsche Vorstellungen können herausgefordert und durch gründliche wissenschaftliche Lehre korrigiert werden. Weltanschauungen sind Teil eines etablierten Glaubenssystems, und diese Überzeugungen sind von Natur aus schwer zu verändern (Cohen 1992).

  6. TÜV - Zertifizierungen in der Life Science Branche

    NASA Astrophysics Data System (ADS)

    Schaff, Peter; Gerbl-Rieger, Susanne; Kloth, Sabine; Schübel, Christian; Daxenberger, Andreas; Engler, Claus

    Life Sciences [1] (Lebenswissenschaften) sind ein globales Innovationsfeld mit Anwendungen der Bio- und Medizinwissenschaften, der Pharma-, Chemie-, Kosmetik- und Lebensmittelindustrie. Diese Branche zeichnet sich durch eine stark interdisziplinäre Ausrichtung aus, mit Anwendung wissenschaftlicher Erkenntnisse und Einsatz von Ausgangsstoffen aus der modernen Biologie, Chemie und Humanmedizin sowie gezielter marktwirtschaftlich orientierter Arbeit.

  7. Compatibility of scientific research and specialty training in general practice. A cross-sectional study.

    PubMed

    Kötter, Thomas; Carmienke, Solveig; Herrmann, Wolfram J

    2014-01-01

    Zielsetzung: An vielen Instituten für Allgemeinmedizin sind Ärzte (w/m) tätig, die sich parallel in der Facharztweiterbildung befinden (im Folgenden: ÄiW). Anders als in anderen klinischen Fächern erfolgt die klinische Weiterbildung dabei häufig bei anderen Arbeitgebern und in Teilzeit. Bislang ist wenig über die Situation der beteiligten Akteure bekannt. Ziel der Studie war es, die Sichtweisen von ÄiW, Institutsleitern (w/m) sowie der Weiterbilder (w/m) auf die Vereinbarkeit von Forschung und Lehre mit der Facharztweiterbildung Allgemeinmedizin zu explorieren.Methodik: Institutsleiter (w/m) an deutschen Universitäten, gleichzeitig wissenschaftlich und klinisch tätige ÄiW und deren klinische Weiterbilder (w/m) wurden webbasiert befragt. Die Fragebögen setzten sich aus offenen und geschlossenen Fragen zusammen. Die Ergebnisse wurden mittels deskriptiver Statistik und qualitativer Methoden analysiert.Ergebnisse: Es antworteten 28 Institutsleiter (w/m) und 20 ÄiW. Die ÄiW waren überwiegend zufrieden bis sehr zufrieden mit der eigenen Weiterbildungssituation. Eine wissenschaftliche Tätigkeit wird von den Befragten jedoch als schwierig vereinbar mit der Facharztweiterbildung angesehen. Als Probleme nannten die Befragten die Koordination mehrerer Arbeitsstellen und die mangelnde Anrechenbarkeit wissenschaftlicher Tätigkeit. Lösungsansätze seien Forschung ermöglichende Verbundweiterbildungen sowie einheitliche Anrechenbarkeit wissenschaftlicher Tätigkeit.Schlussfolgerung: Eine wissenschaftliche Tätigkeit wird von den Befragten als eher schwierig vereinbar mit der Facharztweiterbildung empfunden. Gut organisiert und ausgestaltet (z.B. durch Integration im Rahmen von Verbundweiterbildungsprogrammen und Förderung durch Vorgesetzte) ließen sich beide Tätigkeiten jedoch gut verbinden.

  8. Evaluation of volatile compounds in different types of ghee using direct injection with gas chromatography-mass spectrometry.

    PubMed

    Wadodkar, Uday R; Punjrath, Jagjit S; Shah, Amrish C

    2002-02-01

    Desi ghee (DG) was prepared from fermented cream followed by heat clarification (desi method) in the laboratory and butter oil (BO) was prepared from fresh butter by melting and centrifugation. Fresh samples of three brands of industrial ghee (IG-1, IG-2, IG-3) were collected from the local market. Volatile compounds of desi and industrial ghee and butter oil were isolated and concentrated using direct injection and cryofocussing techniques; separation and identification was by Gas Chromatography Mass Spectrometry (GCMS). A maximum of 36 compounds were detected in desi ghee whereas compounds detected in three industrial ghee samples varied from 22-29. The lowest number of compounds (16) was detected in butter oil. Of the identified compounds, maltol, 5-hydroxymethyl furfuraldehyde, dihydrodihydroxypyranone, 1,3-butanediol and 1-octanol were identified only in desi ghee volatiles. The concentration of acetic acid was found to be remarkably higher in desi ghee volatiles than in industrial ghee. Also the levels of identified fatty acids, methyl ketones, aldehydes, lactones and alcohols were high in desi ghee volatiles compared with industrial ghee and butter oil. In total, 62 compounds were detected, which included 6 aldehydes, 12 ketones, 8 each of fatty acids, alcohols and lactones, 4 each of esters and hydrocarbons or other compounds, and 12 compounds remained unidentified. PMID:12047107

  9. Surface effects and electrochemical cell capacitance in desorption electrospray ionization.

    PubMed

    Volný, Michael; Venter, Andre; Smith, Scott A; Pazzi, Marco; Cooks, R Graham

    2008-04-01

    Time resolved measurements show that during a desorption electrospray ionization (DESI) experiment, the current initially rises sharply, followed by an exponential decrease to a relatively steady current. When the high voltage on the spray emitter is switched off, the current drops to negative values, suggesting that the direction of current flow in the equivalent DESI circuit is reversed. These data demonstrate that the DESI source behaves as a dc capacitor and that the addition of a surface between the sprayer and the counter electrode in DESI introduces a new electrically active element into the system. The charging and discharging behavior was observed using different surfaces and it could be seen both by making current measurements on a plate at the entrance to the mass spectrometer as well as by measuring ion current in the linear ion trap within the vacuum system of the mass spectrometer. The magnitude of the steady state current obtained without analyte present on the surface is different for different surface materials, and different capacitor time constants of the equivalent RC circuits were calculated for different DESI surfaces. The PTFE surface has by far the greatest time constant and is also able to produce the highest DESI currents. Surface properties play a crucial role in charge transfer during DESI in addition to the effects of the chemical properties of the analyte. It is suggested that surface energy (wettability) is an important factor controlling droplet behavior on the surface. The experimental data are correlated with critical surface tension values of different materials. It is proposed, based on the results presented, that super-hydrophobic materials with extremely high contact angles have the potential to be excellent DESI substrates. It is also demonstrated, using the example of the neurotransmitter dopamine, that the surface charge that develops during a DESI-MS experiment can cause electrochemical oxidation of the analyte. PMID

  10. Surface effects and electrochemical cell capacitance in desorption electrospray ionization.

    PubMed

    Volný, Michael; Venter, Andre; Smith, Scott A; Pazzi, Marco; Cooks, R Graham

    2008-04-01

    Time resolved measurements show that during a desorption electrospray ionization (DESI) experiment, the current initially rises sharply, followed by an exponential decrease to a relatively steady current. When the high voltage on the spray emitter is switched off, the current drops to negative values, suggesting that the direction of current flow in the equivalent DESI circuit is reversed. These data demonstrate that the DESI source behaves as a dc capacitor and that the addition of a surface between the sprayer and the counter electrode in DESI introduces a new electrically active element into the system. The charging and discharging behavior was observed using different surfaces and it could be seen both by making current measurements on a plate at the entrance to the mass spectrometer as well as by measuring ion current in the linear ion trap within the vacuum system of the mass spectrometer. The magnitude of the steady state current obtained without analyte present on the surface is different for different surface materials, and different capacitor time constants of the equivalent RC circuits were calculated for different DESI surfaces. The PTFE surface has by far the greatest time constant and is also able to produce the highest DESI currents. Surface properties play a crucial role in charge transfer during DESI in addition to the effects of the chemical properties of the analyte. It is suggested that surface energy (wettability) is an important factor controlling droplet behavior on the surface. The experimental data are correlated with critical surface tension values of different materials. It is proposed, based on the results presented, that super-hydrophobic materials with extremely high contact angles have the potential to be excellent DESI substrates. It is also demonstrated, using the example of the neurotransmitter dopamine, that the surface charge that develops during a DESI-MS experiment can cause electrochemical oxidation of the analyte.

  11. Analysis of sexual assault evidence by desorption electrospray ionization mass spectrometry.

    PubMed

    Mirabelli, Mario F; Chramow, Alexander; Cabral, Elaine C; Ifa, Demian R

    2013-07-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) is employed in the forensic analysis of chemical components present in condoms and imaging of latent fingerprints as circumstantial evidence of sexual assault. Polymers such as nonoxynol-9, polyethylene glycol, and polydimethylsiloxane, as well as small molecules additives such as N-methylmorpholine, N-octylamine, N,N-dibutyl formamide, and isonox 132, commonly used in lubricated condom formulations, were successfully characterized by DESI. The results suggest that DESI-MS is useful for identification of this type of evidence, and it has advantages over conventional extractive techniques, in terms of speed of analysis and ease of use. PMID:23832933

  12. High Energy Physics: Report of research accomplishments and future goals, FY 1983

    SciTech Connect

    Barish, B C

    1983-12-31

    Continuing research in high energy physics carried out by the group from the California Institute of Technology. The program includes research in theory, phenomenology, and experimental high energy physics. The experimental program includes experiments at SLAC, FERMILAB, and DESY.

  13. JWST Primary Mirror Installation Complete

    NASA Video Gallery

    Completing the assembly of the primary mirror, which took place at NASA’s Goddard Space Flight Center in Greenbelt, Maryland, is a significant milestone and the culmination of over a decade of desi...

  14. Shotgun Approach for Quantitative Imaging of Phospholipids Using Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Lanekoff, Ingela T.; Thomas, Mathew; Laskin, Julia

    2014-02-04

    Mass spectrometry imaging (MSI) has been extensively used for determining spatial distributions of molecules in biological samples, and there is increasing interest in using MSI for quantification. Nanospray desorption electrospray ionization, or nano-DESI, is an ambient MSI technique where a solvent is used for localized extraction of molecules followed by nanoelectrospray ionization. Doping the nano-DESI solvent with carefully selected standards enables online quantification during MSI experiments. In this proof-of-principle study, we demonstrate this quantification approach can be extended to provide shotgun-like quantification of phospholipids in thin brain tissue sections. Specifically, two phosphatidylcholine (PC) standards were added to the nano-DESI solvent for simultaneous imaging and quantification of 22 PC species observed in nano-DESI MSI. Furthermore, by combining the quantitative data obtained in the individual pixels, we demonstrate quantification of these PC species in seven different regions of a rat brain tissue section.

  15. Direct Plant Tissue Analysis and Imprint Imaging by Desorption Electrospray Ionization Mass Spectrometry

    PubMed Central

    2011-01-01

    The ambient mass spectrometry technique, desorption electrospray ionization mass spectrometry (DESI-MS), is applied for the rapid identification and spatially resolved relative quantification of chlorophyll degradation products in complex senescent plant tissue matrixes. Polyfunctionalized nonfluorescent chlorophyll catabolites (NCCs), the “final” products of the chlorophyll degradation pathway, are detected directly from leaf tissues within seconds and structurally characterized by tandem mass spectrometry (MS/MS) and reactive-DESI experiments performed in situ. The sensitivity of DESI-MS analysis of these compounds from degreening leaves is enhanced by the introduction of an imprinting technique. Porous polytetrafluoroethylene (PTFE) is used as a substrate for imprinting the leaves, resulting in increased signal intensities compared with those obtained from direct leaf tissue analysis. This imprinting technique is used further to perform two-dimensional (2D) imaging mass spectrometry by DESI, producing well-resolved images of the spatial distribution of NCCs in senescent leaf tissues. PMID:21675752

  16. Molecular Characterization of Organic Aerosols Using Nanospray Desorption/Electrospray Ionization-Mass Spectrometry

    SciTech Connect

    Roach, Patrick J.; Laskin, Julia; Laskin, Alexander

    2010-10-01

    Nanospray desorption electrospray ionization (Nano-DESI) combined with high-resolution mass spectrometry (HR/MS) is a promising approach for detailed chemical characterization of atmospheric organic aerosol (OA) collected in laboratory and field experiments. In Nano-DESI analyte is desorbed into a solvent bridge formed between two capillaries and the analysis surface, which enables fast and efficient characterization of OA collected on substrates without special sample preparation. Stable signals achieved using Nano-DESI make it possible to obtain high-quality HR/MS data using only a small amount of material (<10 ng). Furthermore, Nano-DESI enables efficient detection of chemically labile compounds in OA, which is important for understanding chemical aging phenomena.

  17. Determination of T-2 and HT-2 toxins from maize by direct analysis in real time - mass spectrometry (DART-MS)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Ambient desorption ionization techniques, such as laser desorption with electrospray ionization assistance (ELDI), direct analysis in real time (DART) and desorption electrospray ionization (DESI) have been developed as alternatives to traditional mass spectrometric-based methods. Such techniques al...

  18. Tissue Imaging Using Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Laskin, Julia; Heath, Brandi S.; Roach, Patrick J.; Cazares, Lisa H.; Semmes, O. John

    2012-01-03

    We present the first results showing the ambient imaging of biological samples in their native environment using nanospray desorption ionization (nanoDESI) mass spectrometry. NanoDESI is an ambient pressure ionization technique that enables precise control of ionization of molecules from substrates. We demonstrate highly sensitive and robust analysis of tissue samples with high spatial resolution (<12 {mu}m) without sample preparation, which will be essential for applications in clinical diagnostics, drug discovery, molecular biology, and biochemistry.

  19. [Critical mass, explosive participation at the Max-Planck Institute about research of the living conditions of the scientific-technical world in Starnberg].

    PubMed

    Sonntag, Philipp

    2014-01-01

    Reviewers of the Max-Planck-Institut zur Erforschung der Lebensbedingungen der wissenschaftlich-technischen Welt (MPIL) did focus upon an abundance of vague reports of evaluative commissions, of benchmarking, of scientific modes. Thus it remained rather neglected, what staff actually had researched. An example: Progression and end of project AKR (Work-Consumption-Assessment) does display all kinds of related emotions at MPIL, and the sensitive guidance by Carl Friedrich von Weizsäcker.

  20. Study of Electrochemical Reactions Using Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Liu, Pengyuan; Lanekoff, Ingela T.; Laskin, Julia; Dewald, Howard D.; Chen, Hao

    2012-07-03

    The combination of electrochemistry (EC) and mass spectrometry (MS) is a powerful analytical tool for studying mechanisms of redox reactions, identification of products and intermediates, and online derivatization/recognition of analytes. This work reports a new coupling interface for EC/MS by employing nanospray desorption electrospray ionization (nano-DESI), a recently developed ambient ionization method. We demonstrate online coupling of nano-DESI-MS with a traditional electrochemical flow cell, in which the electrolyzed solution emanating from the cell is ionized by nano-DESI for MS analysis. Furthermore, we show first coupling of nano-DESI-MS with an interdigitated array (IDA) electrode enabling chemical analysis of electrolyzed samples directly from electrode surfaces. Because of its inherent sensitivity, nano-DESI enables chemical analysis of small volumes and concentrations of sample solution. Specifically, good-quality signal of dopamine and its oxidized form, dopamine ortho-quinone, was obtained using 10 μL of 1 μM solution of dopamine on the IDA. Oxidation of dopamine, reduction of benzodiazepines, and electrochemical derivatization of thiol groups were used to demonstrate the performance of the technique. Our results show the potential of nano-DESI as a novel interface for electrochemical mass spectrometry research.

  1. Enhanced capabilities for imaging gangliosides in murine brain with matrix-assisted laser desorption/ionization and desorption electrospray ionization mass spectrometry coupled to ion mobility separation.

    PubMed

    Škrášková, Karolina; Claude, Emmanuelle; Jones, Emrys A; Towers, Mark; Ellis, Shane R; Heeren, Ron M A

    2016-07-15

    The increased interest in lipidomics calls for improved yet simplified methods of lipid analysis. Over the past two decades, mass spectrometry imaging (MSI) has been established as a powerful technique for the analysis of molecular distribution of a variety of compounds across tissue surfaces. Matrix-assisted laser desorption/ionization (MALDI) MSI is widely used to study the spatial distribution of common lipids. However, a thorough sample preparation and necessity of vacuum for efficient ionization might hamper its use for high-throughput lipid analysis. Desorption electrospray ionization (DESI) is a relatively young MS technique. In DESI, ionization of molecules occurs under ambient conditions, which alleviates sample preparation. Moreover, DESI does not require the application of an external matrix, making the detection of low mass species more feasible due to the lack of chemical matrix background. However, irrespective of the ionization method, the final information obtained during an MSI experiment is very complex and its analysis becomes challenging. It was shown that coupling MSI to ion mobility separation (IMS) simplifies imaging data interpretation. Here we employed DESI and MALDI MSI for a lipidomic analysis of the murine brain using the same IMS-enabled instrument. We report for the first time on the DESI IMS-MSI of multiply sialylated ganglioside species, as well as their acetylated versions, which we detected directly from the murine brain tissue. We show that poly-sialylated gangliosides can be imaged as multiply charged ions using DESI, while they are clearly separated from the rest of the lipid classes based on their charge state using ion mobility. This represents a major improvement in MSI of intact fragile lipid species. We additionally show that complementary lipid information is reached under particular conditions when DESI is compared to MALDI MSI.

  2. Non-proximate detection of small and large molecules by desorption electrospray ionization and desorption atmospheric pressure chemical ionization mass spectrometry: instrumentation and applications in forensics, chemistry, and biology.

    PubMed

    Cotte-Rodríguez, Ismael; Mulligan, Christopher C; Cooks, R Graham

    2007-09-15

    Ambient surfaces are examined by mass spectrometry at distances of up to 3 m from the instrument without any prior sample preparation. Non-proximate versions of the desorption electrospray ionization (DESI) and desorption atmospheric pressure chemical ionization experiments are shown to allow rapid, sensitive, and selective detection of trace amounts of active ingredients in pharmaceutical drug formulations, illicit drugs (methamphetamine, cocaine, and diacetylmorphine), organic salts, peptides, chemical warfare agent simulants, and other small organic compounds. Utilizing an ion transport tube to transport analyte ions to the mass spectrometer, nonproximate DESI allows one to collect high-quality, largely interference-free spectra with signal-to-noise (S/N) ratios of more than 100. High selectivity is achieved by tandem mass spectrometry and by reactive DESI, a variant experiment in which reagents added into the solvent spray allow bond-forming reactions with the analyte. Ion/molecule reactions were found to selectively suppress the response of mixture components other than the analyte of interest in nonproximate-DESI. Flexible ion transport tubing is also investigated, allowing performance similar to stainless steel tubing in the transport of ions from the sample to the mass spectrometer. Transfer tube temperature effects are examined. A multiple sprayer DESI source capable of analyzing a larger sample area was evaluated to decrease the sampling time and increase sample throughput. Low nanogram detection limits were obtained for the compounds studied from a wide variety of surfaces, even those present in complex matrixes.

  3. Desorption electrospray ionization imaging mass spectrometry as a tool for investigating model prebiotic reactions on mineral surfaces.

    PubMed

    Bennett, Rachel V; Cleaves, H James; Davis, Jeffrey M; Sokolov, Denis A; Orlando, Thomas M; Bada, Jeffrey L; Fernández, Facundo M

    2013-02-01

    Mineral-assisted thermal decomposition of formamide (HCONH(2)) is a heavily studied model prebiotic reaction that has offered valuable insights into the plausible pathways leading to the chemical building blocks of primordial informational polymers. To date, most efforts have focused on the analysis of formamide reaction products released in solution, although several studies have examined the role of mineral catalysts in promoting this chemistry. We show here that the direct investigation of reactive mineral surfaces by desorption electrospray ionization-mass spectrometry imaging (DESI-MSI) gives a new perspective on the important role of the mineral surface in the formation of reaction products. As a proof-of-principle example, we show that DESI-MSI allows interrogation of the molecular products produced on heterogeneous granite samples with minimal sample preparation. Purine and pyrimidine nucleobases and their derivatives are successfully detected by DESI-MSI, with a strong correlation of the spatial product distribution with the mineral microenvironment. To our knowledge, this study is the first application of DESI-MSI to the study of complex and porous mineral surfaces and their roles in chemical evolution. This DESI-MSI approach is generally applicable to a wide range of reactions or other processes involving minerals. PMID:23286321

  4. Desorption electrospray ionization imaging mass spectrometry as a tool for investigating model prebiotic reactions on mineral surfaces.

    PubMed

    Bennett, Rachel V; Cleaves, H James; Davis, Jeffrey M; Sokolov, Denis A; Orlando, Thomas M; Bada, Jeffrey L; Fernández, Facundo M

    2013-02-01

    Mineral-assisted thermal decomposition of formamide (HCONH(2)) is a heavily studied model prebiotic reaction that has offered valuable insights into the plausible pathways leading to the chemical building blocks of primordial informational polymers. To date, most efforts have focused on the analysis of formamide reaction products released in solution, although several studies have examined the role of mineral catalysts in promoting this chemistry. We show here that the direct investigation of reactive mineral surfaces by desorption electrospray ionization-mass spectrometry imaging (DESI-MSI) gives a new perspective on the important role of the mineral surface in the formation of reaction products. As a proof-of-principle example, we show that DESI-MSI allows interrogation of the molecular products produced on heterogeneous granite samples with minimal sample preparation. Purine and pyrimidine nucleobases and their derivatives are successfully detected by DESI-MSI, with a strong correlation of the spatial product distribution with the mineral microenvironment. To our knowledge, this study is the first application of DESI-MSI to the study of complex and porous mineral surfaces and their roles in chemical evolution. This DESI-MSI approach is generally applicable to a wide range of reactions or other processes involving minerals.

  5. Feasibility of desorption atmospheric pressure photoionization and desorption electrospray ionization mass spectrometry to monitor urinary steroid metabolites during pregnancy.

    PubMed

    Vaikkinen, Anu; Rejšek, Jan; Vrkoslav, Vladimír; Kauppila, Tiina J; Cvačka, Josef; Kostiainen, Risto

    2015-06-23

    Steroids have important roles in the progress of pregnancy, and their study in maternal urine is a non-invasive method to monitor the steroid metabolome and its possible abnormalities. However, the current screening techniques of choice, namely immunoassays and gas and liquid chromatography-mass spectrometry, do not offer means for the rapid and non-targeted multi-analyte studies of large sample sets. In this study, we explore the feasibility of two ambient mass spectrometry methods in steroid fingerprinting. Urine samples from pregnant women were screened by desorption electrospray ionization (DESI) and desorption atmospheric pressure photoionization (DAPPI) Orbitrap high resolution mass spectrometry (HRMS). The urine samples were processed by solid phase extraction for the DESI measurements and by enzymatic hydrolysis and liquid-liquid-extraction for DAPPI. Consequently, steroid glucuronides and sulfates were detected by negative ion mode DESI-HRMS, and free steroids by positive ion mode DAPPI-HRMS. In DESI, signals of eleven steroid metabolite ions were found to increase as the pregnancy proceeded, and in DAPPI ten steroid ions showed at least an order of magnitude increase during pregnancy. In DESI, the increase was seen for ions corresponding to C18 and C21 steroid glucuronides, while DAPPI detected increased excretion of C19 and C21 steroids. Thus both techniques show promise for the steroid marker screening in pregnancy.

  6. Detection and identification of immobilized low-volatility organophosphates by desorption ionization mass spectrometry

    NASA Astrophysics Data System (ADS)

    Hagan, Nathan A.; Cornish, Timothy J.; Pilato, Robert S.; van Houten, Kelly A.; Antoine, Miquel D.; Lippa, Timothy P.; Becknell, Alan F.; Demirev, Plamen A.

    2008-12-01

    Two desorption ionization mass spectrometry (MS) techniques - ultraviolet laser desorption/ionization (LDI) and desorption electrospray ionization (DESI) - have been used to detect and identify low-volatility organophosphates when deposited on surfaces or loaded into the pore volume of porous inorganic or polymeric organic powders. The insecticides malathion and dicrotophos were chosen for this study as simulants of low vapor pressure chemical warfare agents which are inherently difficult to detect directly by traditional methods. Both liquid and powdered forms of either insecticide were readily detected by LDI or DESI MS. LDI MS was performed on a miniaturized home-built time-of-flight (TOF) mass spectrometer and a commercial TOF/TOF instrument. For DESI MS, a home-built ion source was interfaced to a commercial quadrupole ion trap. In LDI, intact molecular ion signatures could be acquired by using an appropriate cationizing agent and powder additive in positive ion mode. Tandem MS was used to confirm the identity of each analyte based on the observed characteristic fragmentation pattern. In DESI, less than 100 pg of the liquid insecticides spotted on clean surfaces were detected, while detection limits for the powder-loaded preparations were lower than 1 [mu]g. The effects of sample surface, salt additives, nanoparticle admixtures, and analyte solubility on the LDI and DESI MS sensitivity have been investigated as well.

  7. Chemical characterization of crude petroleum using nanospray desorption electrospray ionization coupled with high-resolution mass spectrometry.

    PubMed

    Eckert, Peter A; Roach, Patrick J; Laskin, Alexander; Laskin, Julia

    2012-02-01

    Nanospray desorption electrospray ionization (nano-DESI) combined with high-resolution mass spectrometry was used for the first time for the analysis of the polar constituents of liquid petroleum crude oil samples. The analysis was performed in both positive and negative ionization modes using three solvents, one of which (acetonitrile/toluene mixture) is commonly used in petroleomics studies while two other polar solvents (acetonitrile/water and methanol/water mixtures) are generally not compatible with petroleum characterization using mass spectrometry. The results demonstrate that nano-DESI analysis efficiently ionizes petroleum constituents soluble in a particular solvent. When acetonitrile/toluene is used as a solvent, nano-DESI generates electrospray-like spectra. In contrast, strikingly different spectra were obtained using acetonitrile/water and methanol/water. Comparison with the literature data indicates that these solvents selectively extract water-soluble constituents of the crude oil. Water-soluble compounds are predominantly observed as sodium adducts in nano-DESI spectra indicating that addition of sodium to the solvent may be a viable approach for efficient ionization of water-soluble crude oil constituents. Nano-DESI enables rapid screening of different classes of compounds in crude oil samples based on their solubility in solvents that are rarely used for petroleum characterization providing better coverage of the crude oil composition as compared to electrospray ionization (ESI). It also enables rapid characterization of water-soluble components of petroleum samples that is difficult to perform using traditional approaches.

  8. Imaging of Biological Tissues by Desorption Electrospray Ionization Mass Spectrometry

    PubMed Central

    Fernández, Facundo M.

    2013-01-01

    Mass spectrometry imaging (MSI) provides untargeted molecular information with the highest specificity and spatial resolution for investigating biological tissues at the hundreds to tens of microns scale. When performed under ambient conditions, sample pre-treatment becomes unnecessary, thus simplifying the protocol while maintaining the high quality of information obtained. Desorption electrospray ionization (DESI) is a spray-based ambient MSI technique that allows for the direct sampling of surfaces in the open air, even in vivo. When used with a software-controlled sample stage, the sample is rastered underneath the DESI ionization probe, and through the time domain, m/z information is correlated with the chemical species' spatial distribution. The fidelity of the DESI-MSI output depends on the source orientation and positioning with respect to the sample surface and mass spectrometer inlet. Herein, we review how to prepare tissue sections for DESI imaging and additional experimental conditions that directly affect image quality. Specifically, we describe the protocol for the imaging of rat brain tissue sections by DESI-MSI. PMID:23892773

  9. Computing at h1 - Experience and Future

    NASA Astrophysics Data System (ADS)

    Eckerlin, G.; Gerhards, R.; Kleinwort, C.; KrÜNer-Marquis, U.; Egli, S.; Niebergall, F.

    The H1 experiment has now been successfully operating at the electron proton collider HERA at DESY for three years. During this time the computing environment has gradually shifted from a mainframe oriented environment to the distributed server/client Unix world. This transition is now almost complete. Computing needs are largely determined by the present amount of 1.5 TB of reconstructed data per year (1994), corresponding to 1.2 × 107 accepted events. All data are centrally available at DESY. In addition to data analysis, which is done in all collaborating institutes, most of the centrally organized Monte Carlo production is performed outside of DESY. New software tools to cope with offline computing needs include CENTIPEDE, a tool for the use of distributed batch and interactive resources for Monte Carlo production, and H1 UNIX, a software package for automatic updates of H1 software on all UNIX platforms.

  10. Studies on gastrointestinal parasites of pigs in Shimoga region of Karnataka.

    PubMed

    Krishna Murthy, C M; Ananda, K J; Adeppa, J; Satheesha, M G

    2016-09-01

    The study was conducted to ascertain the actual status of gastro-intestinal parasites in pigs maintained under different rearing systems in Shimoga region, Karnataka state. A total of 150 Pigs fecal samples were examined, which includes 50 from organized piggery farm, Veterinary College Shimoga, 50 from private piggery farm of Shimoga and 50 from free range desi pigs of Shimoga city. The fecal samples were processed and examined by direct and sedimentation method. Out of 50 fecal samples examined from organized piggery farm, 19 were found positive for different parasitic eggs, Out of 50 fecal samples screened form private farm, 28 harbored different parasites, whereas from 50 free range desi pigs fecal samples examined, all showed one and other parasitic eggs/ova. The percent prevalence of parasitic infection is more in free range desi pigs compared to Yorkshire breeds maintained under stall fed condition. PMID:27605803

  11. Combined Fourier-transform infrared imaging and desorption electrospray-ionization linear ion-trap mass spectrometry for analysis of counterfeit antimalarial tablets.

    PubMed

    Ricci, Camilla; Nyadong, Leonard; Fernandez, Facundo M; Newton, Paul N; Kazarian, Sergei G

    2007-01-01

    This paper reports use of a combination of Fourier-transform infrared (FTIR) spectroscopic imaging and desorption electrospray ionization linear ion-trap mass spectrometry (DESI MS) for characterization of counterfeit pharmaceutical tablets. The counterfeit artesunate antimalarial tablets were analyzed by both techniques. The results obtained revealed the ability of FTIR imaging in non-destructive micro-attenuated total reflection (ATR) mode to detect the distribution of all components in the tablet, the identities of which were confirmed by DESI MS. Chemical images of the tablets were obtained with high spatial resolution. The FTIR spectroscopic imaging method affords inherent chemical specificity with rapid acquisition of data. DESI MS enables high-sensitivity detection of trace organic compounds. Combination of these two orthogonal surface-characterization methods has great potential for detection and analysis of counterfeit tablets in the open air and without sample preparation.

  12. Preparatory procedure and equipment for the European x-ray free electron laser cavity implementation

    NASA Astrophysics Data System (ADS)

    Reschke, D.; Bandelmann, R.; Buettner, T.; Escherich, K.; Goessel, A.; v. D. Horst, B.; Iversen, J.; Klinke, D.; Kreps, G.; Krupka, N.; Lilje, L.; Matheisen, A.; Moeller, W.-D.; Zimmermann, H. Morales; Mueller, C.; Petersen, B.; Proch, D.; Schmoekel, M.; Steinhau-Kuehl, N.; Thie, J.-H.; Weise, H.; Weitkaemper, H.; Carcagno, R.; Khabiboulline, T. N.; Kotelnikov, S.; Makulski, A.; Nogiec, J.; Nehring, R.; Ross, M.; Schappert, W.

    2010-07-01

    The European x-ray free electron laser is under construction at Deutsches Elektronen-Synchrotron (DESY). The electron beam energy of up to 17.5 GeV will be achieved by using superconducting accelerator technology. Final prototyping, industrialization, and new infrastructure are the actual challenges with respect to the accelerating cavities. This paper describes the preparation strategy optimized for the cavity preparation procedure in industry. For the industrial fabrication and preparation, several new hardware components have been already developed at DESY. The design and construction of a semiautomated rf-measurement machine for dumbbells and end groups are described. In a collaboration among FNAL, KEK, and DESY, an automatic cavity tuning machine has been designed and four machines are under construction. The functionality of these machines with special attention to safety aspects is described in this paper. A new high pressure rinsing system has been developed and is operational.

  13. Desorption electrospray ionization-based imaging of interaction between vascular graft and human body.

    PubMed

    Bodzon-Kulakowska, Anna; Drabik, Anna; Mystkowska, Joanna; Chlabicz, Michal; Gacko, Marek; Dabrowski, Jan R; Mielczarek, Przemyslaw; Silberring, Jerzy; Suder, Piotr

    2016-01-01

    The desorption electrospray ionization-mass spectrometry imaging (DESI-MSI) is known as a fast and convenient MS-based method for lipid imaging in various biological materials. Here, we applied this technique to visualize lipid distribution in a vascular graft removed from a patient's body. This is a good example of the DESI system capabilities toward imaging of interaction between artificial material and living tissues. Detailed analysis allowed for visualization of the spatial distribution of selected lipids in this implanted, artificial material. Not only DESI-MSI allowed visualization of lipid distribution in the investigated material but also enabled identification of the detected molecular species using MS/MS. Here, this technique was successfully used to evaluate the saturation and spatial distribution of endogenous lipids in the artificial vascular graft. Unambiguous identification of the lipids was done with the aid of fragmentation procedure. We also showed that various lipids localize preferably in graft material or internal plaque existing inside the graft.

  14. Micro-solid-phase extraction coupled to desorption electrospray ionization-high-resolution mass spectrometry for the analysis of explosives in soil.

    PubMed

    Bianchi, Federica; Gregori, Adolfo; Braun, Gabriele; Crescenzi, Carlo; Careri, Maria

    2015-01-01

    Home-made micro-solid-phase extraction (SPE) cartridges using different adsorbent materials were tested for the desorption electrospray ionization-high-resolution mass spectrometry (DESI-HRMS) determination of explosives like 2,4,6-trinitrotoluene, cyclotrimethylene-trinitramine, cyclotetramethylene-tetranitramine, pentaerythritol tetranitrate, and trinitrophenylmethylnitramine in soil samples. Quantitation limits in the low nanogram per kilogram range proved the reliability of the method for the detection of explosives at ultra-trace levels. The reduced sample preparation allowed for low costs and high-throughput analyses. Finally, the superior extraction capability of the method was proved by obtaining DESI-HRMS responses at least five times higher than those achieved by performing DESI-HRMS analyses of solid-liquid extracts spotted onto commercial polytetrafluoroethylene slides.

  15. Quantifying the performance of charge-coupled devices in ambient conditions - Oral presentation

    SciTech Connect

    Dungee, Ryan

    2015-08-22

    Telescope surveys have given us a great deal of information about our universe, but the images they capture carry with them an inherent limitation. The question then is how do we take this information to the next level? The answer: the Dark Energy Spectroscopic Instrument (DESI). DESI is an instrument that will measure the distance to tens of millions of galaxies in our night sky. This information can be combined with already existing images to construct a three dimensional map of our universe providing a great deal of new opportunities for cosmological research. The DESI guidance system consists of 10 detectors called charge-coupled devices (CCDs). Each CCD is made of silicon atoms that emit electrons when struck with light, the electrons are counted and then used to reconstruct an image. But, CCDs suffer from an issue known as ‘dark current’ which are false counts that come from thermal motions of the silicon atoms. This is particularly problematic since they contribute to the uncertainty of a measurement without contributing to our signal. This causes a drop in the signal to noise ratio, a value that needs to be maximized in order to meet DESI’s high precision requirements. This summer was spent ensuring the DESI guidance system would meet its specifications. Data was collected using a CCD of the same type that would be used on DESI and the effectiveness of dark current removal was tested. Exposures were taken for a wide range of temperatures and exposure lengths and a number of dark current removal methods were implemented. While further testing is required, the initial results are quite promising and the DESI guidance system is on track to meet its specifications

  16. Comparison of Drug Distribution Images from Thin Tissue Sections Obtained Using Desorption Electrospray Ionization Tandem Mass Spectrometry and Whole-Body Autoradiography

    SciTech Connect

    Kertesz, Vilmos; Van Berkel, Gary J; Vavek, Marissa; Koeplinger, Kenneth A.; Schneider, Bradley B; Covey, Thomas R.

    2008-01-01

    Desorption electrospray ionization tandem mass spectrometry (DESI-MS/MS) and whole-body autoradiography (WBA) were used for chemical imaging of whole-body thin tissue sections of mice intravenously dosed with propranolol (7.5 mg/kg). DESI-MS/MS imaging utilized selected reaction monitoring detection performed on an AB/MDS SCIEX 4000 QTRAP mass spectrometer equipped with a prototype extended length particle discriminator interface. Propranolol images of the tissue sections using DESI-MS/MS were obtained at surface scan rates of 0.1, 0.5, 2 and 7 mm/s. Although signal decreased with increasing scan rate, useful whole-body images for propranolol were obtained from the tissues even at 7 mm/s, which required just 79 min of analysis time. Attempts to detect and image the distribution of the known propranolol metabolites were unsuccessful. Regions of the tissue sections showing the most radioactivity from WBA sections were excised and analyzed by HPLC with radiochemical detection to determine relative levels of propranolol and metabolites present. Comparison of the DESI-MS/MS signal for propranolol and the radioactivity attributed to propranolol from WBA sections indicated nominal agreement between the two techniques for the amount of propranolol in the brain, lung, and liver. Data from the kidney showed an unexplained disparity between the two techniques. The results of this study show the feasibility of using DESI-MS/MS to obtain useful chemical images of a drug in whole-body thin tissue sections following drug administration at a pharmacologically relevant level. Further optimization to improve sensitivity and enable detection of the drug metabolites will be among the requirements necessary to move DESI-MS/MS chemical imaging forward as a practical tool in drug discovery.

  17. Neutral loss analysis of amino acids by desorption electrospray ionization using an unmodified tandem quadrupole mass spectrometer.

    PubMed

    Corso, Gaetano; Paglia, Giuseppe; Garofalo, Daniela; D'Apolito, Oceania

    2007-01-01

    A new method to analyze free amino acids using desorption electrospray ionization (DESI) has been implemented. The method is based on the neutral loss mode determination of underivatized amino acids using a tandem quadrupole mass spectrometer equipped with an unmodified atmospheric interface. Qualitative and quantitative optimization of DESI parameters, including ESI voltage, solvent flow rate, angle of collection and incidence, gas flow and temperatures, was performed for amino acids detection. The parameters for DESI analysis were evaluated using a mixture of valine, leucine, methionine, phenylalanine and tyrosine standards. A few microliters of this mixture were deposited on a slide, dried and analyzed at a flow rate of 2 microL/min. The optimal ionization response was obtained using laboratory glass slides and an equivalent solution of water/methanol doped with 2% of formic acid. The method specificity was evaluated by comparing product ion spectra and neutral loss analysis of amino acids obtained either by DESI or by electrospray ionization flow injection analysis (ESI-FIA). To evaluate the quantitative response on amino acids analyzed by DESI, calibration curves were performed on amino acid standard solutions spiked with a fixed amount of labelled amino acids. The method was also employed to analyze free amino acids from blood spots, after a rapid solvent extraction without other sample pretreatment, from positive and negative subjects. The method enables one to analyze biological samples and to discriminate healthy subjects from patients affected by inherited metabolic diseases. The intrinsic high-throughput analysis of DESI represents an opportunity, because of its potential application in clinical chemistry, for the expanded screening of some inborn errors of metabolism.

  18. Multistage Reactive Transmission-Mode Desorption Electrospray Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Peters, Kevin C.; Comi, Troy J.; Perry, Richard H.

    2015-09-01

    Elucidating reaction mechanisms is important for advancing many areas of science such as catalyst development. It is often difficult to probe fast reactions at ambient conditions with high temporal resolution. In addition, systems involving reagents that cross-react require analytical methods that can minimize interaction time and specify their order of introduction into the reacting system. Here, we explore the utility of transmission mode desorption electrospray ionization (TM-DESI) for reaction monitoring by directing a microdroplet spray towards a series of meshes with micrometer-sized openings coated with reagents, an approach we call multistage reactive TM-DESI (TM n -DESI, where n refers to the number of meshes; n = 2 in this report). Various stages of the reaction are initiated at each mesh surface, generating intermediates and products in microdroplet reaction vessels traveling towards the mass spectrometer. Using this method, we investigated the reactivity of iron porphyrin catalytic hydroxylation of propranolol and other substrates. Our experimental results indicate that TM n -DESI provides the ability to spatially separate reagents and control their order of introduction into the reacting system, thereby minimizing unwanted reactions that lead to catalyst deactivation and degradation products. In addition, comparison with DESI-MS analyses (the Zare and Latour laboratories published results suggesting accessible reaction times <1 ms) of the reduction of dichlorophenolindophenol by L-ascorbic acid suggest that TM 1 -DESI can access reaction times less than 1 ms. Multiple meshes allow sequential stages of desorption/ionization per MS scan, increasing the number of analytes and reactions that can be characterized in a single experiment.

  19. Importance and benefits of the doctoral thesis for medical graduates.

    PubMed

    Giesler, Marianne; Boeker, Martin; Fabry, Götz; Biller, Silke

    2016-01-01

    Einleitung: Die Mehrheit der medizinischen AbsolventInnen in Deutschland promoviert, obwohl der Titel nicht zur ärztlichen Berufsausübung notwendig ist. Zur Frage, welchen individuellen Nutzen die Doktorarbeit aus Sicht der Promovenden hat, ist bislang nur wenig bekannt. Sie ist daher Gegenstand dieser Untersuchung.Methode: Analysiert wurden Daten aus Absolventenstudien der Abschlussjahrgänge 2007/2008 (N=514) und 2010/2011 (N=598) der Medizinischen Fakultäten Baden-Württembergs.Ergebnisse: 53% der Befragten haben 1,5 Jahre nach Studienabschluss ihre Promotion abgeschlossen. Die stärkste Zustimmung zu Beweggründen, eine Doktorarbeit anzufertigen, erfahren die Motive „Promotion ist üblich“ (85%) und „Verbesserung der Berufschancen“ (75%). Dem Motiv, eine akademische Karriere anzustreben, stimmten 36% zu. Weniger als 10% der Befragten setzen ihre Promotionsarbeit als Strategie bei der Stellensuche ein. Der Anteil der AbsolventInnen, die in der Krankenversorgung arbeiten ist unter den Promovierten praktisch genauso groß wie unter den Nicht-Promovierten. Diejenigen, die für die Promotion stärker wissenschaftliche Motive angeben, sind auch aktuell stärker an einer akademischen Karriere interessiert und sehen für sich mehr Möglichkeiten wissenschaftlich zu arbeiten. Als impliziter Nutzen zeigte sich, dass die promovierten AbsolventInnen ihre wissenschaftlichen Kompetenzen signifikant höher einschätzen, als ihre nicht promovierten KollegInnen.Diskussion: Obwohl die meisten MedizinerInnen eine Promotion nicht in erster Linie aus originärem Forschungsinteresse anstreben, erweitern sie dadurch dennoch ihre wissenschaftlichen Kompetenzen. Einen offensichtlicheren Nutzen hat die Promotion für diejenigen, die eine wissenschaftliche Karriere anstreben.

  20. Spectral radiance calibrations between 165-300 nm - An interlaboratory comparison

    NASA Technical Reports Server (NTRS)

    Bridges, J. M.; Ott, W. R.; Pitz, E.; Schulz, A.; Einfeld, D.; Stuck, D.

    1977-01-01

    The spectral radiance of deuterium lamps calibrated by the Max-Planck-Institut fuer Astronomie (MPI), by the U.S. National Bureau of Standards (NBS), and by the Physikalisch-Technische Bundesanstalt (PTB) are compared to check the agreement of UV radiometric scales. The NBS group used the optically thin continuum radiation from a wall-stabilized hydrogen arc as its fundamental radiometric standard, while the MPI and PTB groups used the synchrotron radiation facility in DESY. It is found that the spectral radiance scales based upon the DESY synchrotron and the NBS hydrogen arc are consistent, at least for one wavelength relative to another.

  1. Desorption electrospray ionization imaging of small organics on mineral surfaces.

    PubMed

    Bennett, Rachel V; Fernández, Facundo M

    2015-01-01

    Desorption electrospray ionization (DESI)-mass spectrometry facilitates the ambient chemical analysis of a variety of surfaces. Here we describe the protocol for using DESI imaging to measure the distributions of small prebiotically relevant molecules on granite surfaces. Granites that contain a variety of juxtaposed mineral species were reacted with formamide in order to study the role of local mineral environment on the production of purines and pyrimidines. The mass spectrometry imaging (MSI) methods described here can also be applied to the surface analysis of rock samples involved in other applications such as petroleum or environmental chemistries. PMID:25361668

  2. Desorption electrospray ionization imaging of small organics on mineral surfaces.

    PubMed

    Bennett, Rachel V; Fernández, Facundo M

    2015-01-01

    Desorption electrospray ionization (DESI)-mass spectrometry facilitates the ambient chemical analysis of a variety of surfaces. Here we describe the protocol for using DESI imaging to measure the distributions of small prebiotically relevant molecules on granite surfaces. Granites that contain a variety of juxtaposed mineral species were reacted with formamide in order to study the role of local mineral environment on the production of purines and pyrimidines. The mass spectrometry imaging (MSI) methods described here can also be applied to the surface analysis of rock samples involved in other applications such as petroleum or environmental chemistries.

  3. Project summary

    SciTech Connect

    Dungee, Ryan

    2015-08-22

    Telescope surveys have given us a great deal of information about our universe, but the images they capture carry with them an inherent limitation. The question then is how do we take this information to the next level? The answer: the Dark Energy Spectroscopic Instrument (DESI). DESI is an instrument that will measure the distance to tens of millions of galaxies in our night sky. This information can be combined with already existing images to construct a three dimensional map of our universe providing a great deal of new opportunities for cosmological research.

  4. Production and test results of SC 3.9-GHz accelerating cavity at Fermilab

    SciTech Connect

    Khabiboulline, Timergali; Cooper, Charlie; Edwards, Helen; Foley, Mike; Gonin, Ivan; Mitchell, Donald; Olis, D.; Rowe, Allan; Salman, Tariq; Solyak, Nikolay; /Fermilab

    2006-08-01

    The 3rd harmonic 3.9GHz accelerating cavity was proposed to improve beam performances for TTF-FEL facility. In the frame of collaboration Fermilab will provide DESY with a cryomodule containing a string of four cavities. In addition, a second cryomodule with one cavity will be fabricated for installation in the Fermilab photo-injector, which will be upgraded for the ILC accelerator test facility. In this paper we discuss the status of the cavity and coupler production and the first result of cavity tests. It is hoped that this project will be completed during the first half of 2007 and the cryomodule delivered to DESY in this time span.

  5. Testing an e2v CCD230-42 sensor for dark current performance at ambient temperatures - Final Paper

    SciTech Connect

    Dungee, Ryan

    2015-08-20

    The design of the Guidance Focus and Alignment (GFA) system for the Dark Energy Spectroscopic Instrument (DESI) project calls for a set of charge-coupled devices (CCDs) which operate at ambient temperature. Here we assess the performance of these CCDs under such conditions. Data was collected from –21°C to 28°C and used to determine the effect of temperature on the effectiveness of dark current subtraction. Comparing the dark current uncertainty to our expected signal has shown that the DESI design specifications will be met without need for significant changes.

  6. The On-line Bibliographical Data Base ARIBIB for Astronomical References

    NASA Astrophysics Data System (ADS)

    Demleitner, M.; Burkhardt, G.; Hefele, H.; Heinrich, I.; Schmadel, L. D.; Wielen, R.

    The ARIBIB is an on-line bibliographical data base for astronomical references. The ARIBIB is based on the information given in the printed bibliography ``Astronomy and Astrophysics Abstracts'' (AAA). The bibliography AAA is produced and published by the Astronomisches Rechen-Institut (ARI) Heidelberg in collaboration with the Fachinformationszentrum Karls-ruhe (FIZ) and the Institution of Electrical Engineers (IEE). The ARIBIB gives the bibliographical information in the ``reference format''. This reference format contains the author(s) or editor(s), title, bibliographic data for the source, keywords, and the AAA reference number. Not included are the abstracts of the papers. The abstracts can be found either in the printed volumes of AAA or in the on-line data bases INSPEC or INSPHYS. At present, the ARIBIB contains references to the literature from 1983 until now. Information on the older literature (1982 and earlier) is presently not available to us in a machine-readable format. The ARI intends, however, to include the older literature into the ARIBIB by scanning the corresponding volumes of AAA and of the bibliography ``Astronomischer Jahresbericht'', and to translate these scans into a text format appropriate for the use in the ARIBIB. The ARIBIB would then be a tool which is especially valuable for the on-line search in the older literature. As of July 1998, the ARIBIB is open for free access to all subscribers of the printed bibliography AAA.

  7. Bibliographic Resources for the Historian of Astronomy

    NASA Astrophysics Data System (ADS)

    Corbin, B. G.

    1999-12-01

    Many large library collections now have online bibliographic catalogs on the web. These provide many hidden resources for the historian of astronomy. Special searching techniques will allow the historian to scan bibliographic records of hundreds of entries relating to biographies of astronomers, collected works of astronomers, ancient and medieval astronomy and many other historical subjects. Abstract databases such as the Astrophysics Data System and ARIBIB are also adding much historical bibliographic information. ARIBIB will eventually contain scanned images of the Astronomischer Jahresbericht containing bibliographic entries for all literature of astronomy from 1899 to 1968 and Astronomy and Astrophysics Abstracts from 1969 to present. Commercial services such as UnCover and FirstSearch provide a means of reaching bibliographic entries for journal and book literature in the history of astronomy which were not easily located in the past. A broad overview of these collections and services will be given, and searching techniques for finding ``hidden" bibliographic data will be presented. Web page addresses will be given for all sources covered.

  8. On-probe atmospheric pressure thermal desorption-ESI-MS for the analysis of volatile analytes or volatile pryolysis products

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An on-probe pyrolyzer has been constructed and interfaced with desorption electrospray ionization (DESI) mass spectrometry (MS) for the rapid analysis of non-volatile pyrolysis products. The detection and analysis of non-volatile pyrolysis products of peptides, proteins and the synthetic polymer pol...

  9. AN INDICATOR OF POTENTIAL STREAM WOOD CONTRIBUTION FOR RIPARIAN FORESTS

    EPA Science Inventory

    In northwestern Oregon a key function of riparian forests is to provide wood to the stream network. This function is a prominent feature of Federal and State forest practices in the region. Thus, defining indicators which are associated with this function are important for desi...

  10. Desorption Electrospray Ionization Mass Spectrometry Reveals Lipid Metabolism of Individual Oocytes and Embryos

    PubMed Central

    González-Serrano, Andrés Felipe; Pirro, Valentina; Ferreira, Christina R.; Oliveri, Paolo; Eberlin, Livia S.; Heinzmann, Julia; Lucas-Hahn, Andrea; Niemann, Heiner; Cooks, Robert Graham

    2013-01-01

    Alteration of maternal lipid metabolism early in development has been shown to trigger obesity, insulin resistance, type 2 diabetes and cardiovascular diseases later in life in humans and animal models. Here, we set out to determine (i) lipid composition dynamics in single oocytes and preimplantation embryos by high mass resolution desorption electrospray ionization mass spectrometry (DESI-MS), using the bovine species as biological model, (ii) the metabolically most relevant lipid compounds by multivariate data analysis and (iii) lipid upstream metabolism by quantitative real-time PCR (qRT-PCR) analysis of several target genes (ACAT1, CPT 1b, FASN, SREBP1 and SCAP). Bovine oocytes and blastocysts were individually analyzed by DESI-MS in both positive and negative ion modes, without lipid extraction and under ambient conditions, and were profiled for free fatty acids (FFA), phospholipids (PL), cholesterol-related molecules, and triacylglycerols (TAG). Principal component analysis (PCA) and linear discriminant analysis (LDA), performed for the first time on DESI-MS fused data, allowed unequivocal discrimination between oocytes and blastocysts based on specific lipid profiles. This analytical approach resulted in broad and detailed lipid annotation of single oocytes and blastocysts. Results of DESI-MS and transcript regulation analysis demonstrate that blastocysts produced in vitro and their in vivo counterparts differed significantly in the homeostasis of cholesterol and FFA metabolism. These results should assist in the production of viable and healthy embryos by elucidating in vivo embryonic lipid metabolism. PMID:24073231

  11. 75 FR 36419 - Determination That DELALUTIN (hydroxyprogesterone caproate) Injection, 125 Milligrams/Milliliter...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-25

    ... and disturbances of the menstrual cycle (hypomenorrhea, oligomenorrhea, irregular cycles). In addition... (DESI) program. In the Federal Register of September 9, 1971 (36 FR 18115), FDA announced that... classified as effective or probably effective. In the Federal Register of October 10, 1973 (38 FR 27947),...

  12. Transient decrements in mood during energy deficit are independent of dietary protein-to-carbohydrate ratio

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Energy deficit and dietary macronutrient intake are thought to independently modulate cognition, mood and sleep. To what extent manipulating the dietary ratio of protein-to-carbohydrate affects mood, cognition and sleep during short-term energy deficit is undetermined. Using a randomized, block desi...

  13. Experiment and Radiation Safety at Colliders

    NASA Astrophysics Data System (ADS)

    Pugatch, V.

    The emphasis is made on the novel radiation monitoring systems at colliders based on the Metal Foil Detector technology. The radiation monitoring systems for the HERA-B experiment (DESY, Hamburg) as well as for the Silicon Tracker of the LHCb experiment (CERN, Geneva) are described. The micro-strip Metal Foil Detector used for the beam profile monitoring is briefly presented.

  14. Common HEP UNIX Environment

    NASA Astrophysics Data System (ADS)

    Taddei, Arnaud

    After it had been decided to design a common user environment for UNIX platforms among HEP laboratories, a joint project between DESY and CERN had been started. The project consists in 2 phases: 1. Provide a common user environment at shell level, 2. Provide a common user environment at graphical level (X11). Phase 1 is in production at DESY and at CERN as well as at PISA and RAL. It has been developed around the scripts originally designed at DESY Zeuthen improved and extended with a 2 months project at CERN with a contribution from DESY Hamburg. It consists of a set of files which are customizing the environment for the 6 main shells (sh, csh, ksh, bash, tcsh, zsh) on the main platforms (AIX, HP-UX, IRIX, SunOS, Solaris 2, OSF/1, ULTRIX, etc.) and it is divided at several "sociological" levels: HEP, site, machine, cluster, group of users and user with some levels which are optional. The second phase is under design and a first proposal has been published. A first version of the phase 2 exists already for AIX and Solaris, and it should be available for all other platforms, by the time of the conference. This is a major collective work between several HEP laboratories involved in the HEPiX-scripts and HEPiX-X11 working-groups.

  15. Chemical Analysis of Organic Aerosols Using Reactive Nanospray Desorption Electrospray Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Laskin, A.; Laskin, J.; Nizkorodov, S.

    2013-12-01

    Nanospray Desorption Electrospray Ionization (nano-DESI) technique integrated with high resolution mass spectrometry (HR-MS) enables molecular level analysis of organic aerosol (OA) samples. In nano-DESI, analyte is desorbed into a small volume solvent bridge formed between two capillaries positioned in contact with analyte and enables fast and efficient characterization of OA collected on substrates without sample preparation. We report applications of the nano-DESI/HR-MS approach in a number of our recent studies focused on molecular identification of organic compounds in laboratory and in field collected OA samples. Reactive nano-DESI approach where selected reagent is added to the solvent is used for examining the presence of individual species containing specific functional groups and for their quantification within complex mixtures of OA. Specifically, we use the Girard's reagent T (GT) to probe and quantify carbonyl compounds in the SOA mixtures. We estimate for the first time the amounts of dimers and trimers in the SOA mixtures. We found that the most abundant dimer in limonene/O3 SOA was detected at the ˜0.5 pg level and the total amount of dimers and trimers in the analyzed sample was ˜11 pg. Understanding of the OA composition at the molecular level allowed us to identify key aging reactions, including the transformation of carbonyls to imines and carbonyl-imine oligomerization, that may contribute to the formation of brown carbon in the atmosphere.

  16. INDOOR AIR QUALITY AND INHALATION EXPOSURE - SIMULATION TOOL KIT

    EPA Science Inventory

    A Microsoft Windows-based indoor air quality (IAQ) simulation software package is presented. Named Simulation Tool Kit for Indoor Air Quality and Inhalation Exposure, or IAQX for short, this package complements and supplements existing IAQ simulation programs and is desi...

  17. CHILDREN'S ENVIRONMENTAL HEALTH RESEARCH - EPA AND DHHS COLLABORATE TO ADDRESS LONG-TERM HEALTH ISSUES

    EPA Science Inventory

    Children's environmental health is important to the mission of both the U.S. Department of Health and Human Services (DHHS) and the U.S. Environmental Protection Agency (EPA). Over the past seven years, federal experts from a variety of disciplines including survey sampling desi...

  18. PHYTOREMEDIATION OF DREDGED SEDIMENTS: A CASE STUDY AT THE JONES ISLAND CDF

    EPA Science Inventory

    The Jones Island Confined Disposal Facility (CDF) is a 44 acre in-lake area that receives dredged material from Milwaukee Harbor and the surrounding waterways. Some of those materials are contaminated with industrial waste and urban run-off. The CDF is nearing the end of its desi...

  19. Registration of ‘Ok102’ Wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    ‘Ok102’ (Reg. no. CV-941, PI 632635) is a hard red winter wheat (Triticum aestivum L.) developed cooperatively by the Oklahoma Agric. Exp. Stn. and the USDA-ARS. Ok102 was released in March 2002, primarily on the basis of its resistance to several foliar diseases, excellent milling quality, and desi...

  20. 75 FR 16001 - New Animal Drugs; Removal of Obsolete and Redundant Regulations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-31

    ... Study Implementation (DESI) program (68 FR 47332). CVM proposed to withdraw the new animal drug... had a new strategy and concept for assessing the safety of antimicrobial new animal drugs, including... HUMAN SERVICES Food and Drug Administration 21 CFR Part 558 (formerly Docket No. 2003N-0324) New...

  1. C4 grasses prosper as carbon dioxide eliminates desiccation in warmed semi-arid grasslands

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Global warming is predicted to induce desiccation in many world regions through increases in evaporative demand. Rising CO2 may counter that trend by improving plant water use efficiency (WUE). However, it is not clear how important this CO2-enhanced WUE might be in off-setting warming-induced desi...

  2. System-Events Toolbox--Activating Urban Places for Social Cohesion through Designing a System of Events That Relies on Local Resources

    ERIC Educational Resources Information Center

    Fassi, Davide; Motter, Roberta

    2014-01-01

    This paper is a reflection on the use of public spaces in towns and the development of a system-events toolbox to activate them towards social cohesion. It is the result of a 1 year action research developed together with POLIMI DESIS Lab of the Department of Design to develop design solutions to open up the public spaces of the campus to the…

  3. Review of studies on conventional linear colliders in the S- and X-Band regime

    SciTech Connect

    Loew, G.A.

    1992-07-01

    This paper gives a status report on the conventional approaches to linear colliders at DESY, KEK, SLAC and INP-Protvino in the S- and X-Band regime. Critical topics are reviewed and a discussion of global issues such as future R D requirements is included.

  4. Review of studies on conventional linear colliders in the S- and X-Band regime

    SciTech Connect

    Loew, G.A.

    1992-07-01

    This paper gives a status report on the conventional approaches to linear colliders at DESY, KEK, SLAC and INP-Protvino in the S- and X-Band regime. Critical topics are reviewed and a discussion of global issues such as future R&D requirements is included.

  5. Direct analysis of ethylenediaminetetraacetic acid (EDTA) on concrete by reactive-desorption electrospray ionization mass spectrometry.

    PubMed

    Lebeau, D; Reiller, P E; Lamouroux, C

    2015-01-01

    Analysis of organic ligands such as ethylenediaminetetraacetic acid (EDTA) is today an important challenge due to their ability to increase the mobility of radionuclides and metals. Reactive desorption electrospray ionization mass spectrometry (reactive-DESI-MS) was used for direct analysis of EDTA on concrete samples. EDTA forms complexes and those with Fe(III) ions are among the most thermodynamically favored. This complexing capacity was used to improve the specific detection of EDTA directly on a concrete matrix by doping the solvent spray of DESI with a solution of FeCl3 to selectively create the complex between EDTA and Fe(III). Thus, EDTA sensitivity was largely improved by two orders of magnitude with reactive-DESI-MS experiments thanks to the specific detection of EDTA as a [EDTA-4H+Fe(III)](-) complex. The proof of principle that reactive DESI can be applied to concrete samples to detect EDTA has been demonstrated. Its capacity for semi-quantitative determination and localization of EDTA under ambient conditions and with very little sample preparation, minimizing sample manipulations and solvent volumes, two important conditions for the development of new methodologies in the field of analytical chemistry, has been shown.

  6. Design, fabrication and test of a microfluidic nebulizer chip for desorption electrospray ionization mass spectrometry

    PubMed Central

    Sen, A K; Darabi, J; Knapp, D R

    2009-01-01

    This paper presents design, microfabrication, and test of a microfluidic nebulizer chip for desorption electrospray ionization mass spectrometry (DESI-MS) in proteomic analysis. The microfluidic chip is fabricated using cyclic olefin copolymer (COC) substrates. The fluidic channels are thermally embossed onto a base substrate using a nickel master and then a top substrate is thermally bonded to seal the channels. Carbon ink embossed into the top COC substrate is used to established electrical connection between the external power supply and the liquid in the channel. The microfluidic chip to external capillary connection is fabricated using Nanoport™ interconnection system. Preliminary leakage test was performed to demonstrate the interconnection system is leak-free and pressure test was performed to evaluate the burst pressure. Finally, the nebulizer chip was used to perform DESI-MS for analyzing peptides (BSA and bradykinin) and reserpine on the nanoporous alumina surface. DESI-MS performance of the microfluidic nebulizer chip is compared with that obtained using a conventional DESI nebulizer. PMID:20161284

  7. East Indian Families Raising ABCD Adolescents: Cultural and Generational Challenges

    ERIC Educational Resources Information Center

    Poulsen, Shruti S.

    2009-01-01

    Immigration is a process fraught with both challenges and opportunities for families. In particular, East Indian families with U.S.-born adolescents experience the challenges of bridging cultures across generational divides; they are perceived by others as confused, identity less, and conflicted or as American-Born, Confused Desis (ABCDs). This…

  8. NATIONAL LAKE ASSESSMENT MONITORING DESIGN

    EPA Science Inventory

    The USEPA designed the National Lake Assessment in 2005-6 with field sampling being completed in 2007. The objective of the assessment is to estimate the ecological condition of lakes and reservoirs nationally. The objective of this paper is to describe the national survey desi...

  9. Simple sequence repeat markers that identify Claviceps species and strains

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Claviceps purpurea is a pathogen that infects most members of the Pooideae subfamily and causes ergot, a floral disease in which the ovary is replaced with a sclerotium. This study was initiated to develop Simple Sequence Repeat (SSRs) markers for rapid identification of C. purpurea. SSRs were desi...

  10. Current and Emerging Water Distribution Main Renewal Technologies

    EPA Science Inventory

    The funding needed to address aging underground infrastructure renewals range as high as $325 billion over the next 20 years and with the current annual replacement rate at 0.5%, pipes are being expected to last for 200 years, which is unreasonable considering most pipes are desi...

  11. 76 FR 1174 - Drugs for Human Use; Drug Efficacy Study Implementation; Oral Prescription Drugs Offered for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-07

    ... and other parties in response to various DESI notices covering relevant products. \\3\\ 38 FR 34481 (December 14, 1973). \\4\\ 38 FR 4006 (February 9, 1973) and 37 FR 15022 (July 27, 1972). All drugs covered by... Federal Register on May 25, 1982 (47 FR 22606), FDA revoked the temporary exemption that permitted...

  12. Mapping the biological condition of USA rivers and streams

    EPA Science Inventory

    We predicted the probable (pr) biological condition (BC) of ~5.4 million km of stream within the conterminous USA (CONUS). National maps of prBC could provide an important tool for prioritizing monitoring and restoration of streams. The USEPA uses a spatially balanced survey desi...

  13. High-Resolution Desorption Electrospray Ionization Mass Spectrometry for Chemical Characterization of Organic Aerosols

    SciTech Connect

    Laskin, Julia; Laskin, Alexander; Roach, Patrick J.; Slysz, Gordon W.; Anderson, Gordon A.; Nizkorodov, Serguei; Bones, David L.; Nguyen, Lucas

    2010-03-01

    Characterization of the chemical composition and chemical transformations of secondary organic aerosol (SOA) is both a major challenge and the area of greatest uncertainty in current aerosol research. This study presents the first application of desorption electrospray ionization combined with high-resolution mass spectrometry (DESI-MS) for detailed chemical characterization and studies of chemical aging of OA collected on Teflon substrates. DESI-MS offers unique advantages both for detailed characterization of chemically labile components in OA that cannot be detected using more traditional electrospray ionization mass spectrometry (ESI-MS) and for studying chemical aging of OA. DESI-MS enables rapid characterization of OA samples collected on substrates by eliminating the sample preparation stage. In addition, it enables detection and structural characterization of chemically labile molecules in OA samples by minimizing the residence time of analyte in the solvent. SOA produced by the ozonolysis of limonene (LSOA) was allowed to react with gaseous ammonia. Chemical aging resulted in measurable changes in the optical properties of LSOA observed using UV- visible spectroscopy. DESI-MS combined with tandem mass spectrometry experiments (MS/MS) enabled identification of species in aged LSOA responsible for absorption of the visible light. Detailed analysis of the experimental data allowed us to identify chemical changes induced by reactions of LSOA constituents with ammonia and distinguish between different mechanisms of chemical aging.

  14. DEVELOPMENTAL TOXICITY OF ATRAZINE METABOLITES IN FISCHER 344 RATS

    EPA Science Inventory

    Previously we have shown that atrazine, a commonly used herbicide, causes full-litter resorption (FLR) in Fischer 344 rats at 50 mg/kg. In this study, we tested four atrazine metabolites for their potential to cause FLR and developmental toxicity. Desethylatrazine (DEA), desis...

  15. Designing Computer Software To Minimize the Need for Employee Training.

    ERIC Educational Resources Information Center

    Winiecki, Donald J.

    2000-01-01

    Discusses problems that arise when computer software users have to learn a new system while maintaining productivity. Highlights include active learning; a constructivist view; Vygotsky's zone of proximal development; and a model called Design for Learnability (DesiL) that focuses the performance technologist on an ethnomethodological study of…

  16. A New Splitting Method for Both Analytical and Preparative LC/MS

    NASA Astrophysics Data System (ADS)

    Cai, Yi; Adams, Daniel; Chen, Hao

    2013-11-01

    This paper presents a novel splitting method for liquid chromatography/mass spectrometry (LC/MS) application, which allows fast MS detection of LC-separated analytes and subsequent online analyte collection. In this approach, a PEEK capillary tube with a micro-orifice drilled on the tube side wall is used to connect with LC column. A small portion of LC eluent emerging from the orifice can be directly ionized by desorption electrospray ionization (DESI) with negligible time delay (6~10 ms) while the remaining analytes exiting the tube outlet can be collected. The DESI-MS analysis of eluted compounds shows narrow peaks and high sensitivity because of the extremely small dead volume of the orifice used for LC eluent splitting (as low as 4 nL) and the freedom to choose favorable DESI spray solvent. In addition, online derivatization using reactive DESI is possible for supercharging proteins and for enhancing their signals without introducing extra dead volume. Unlike UV detector used in traditional preparative LC experiments, this method is applicable to compounds without chromophores (e.g., saccharides) due to the use of MS detector. Furthermore, this splitting method well suits monolithic column-based ultra-fast LC separation at a high elution flow rate of 4 mL/min. [Figure not available: see fulltext.

  17. Stream and River Condition Across the BLM's National System of Public Lands.

    EPA Science Inventory

    The Bureau of Land Management (BLM), in collaboration with the U.S. Environmental Protection Agency, conducted the first ever Western Rivers and Streams Assessment (WRSA), a survey of the condition of BLM streams and rivers throughout the contiguous western U.S. The WRSA was desi...

  18. Effects of Early Serotonin Programming on Fear Response, Memory and Aggression

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The neurotransmitter serotonin (5-HT) also acts as a neurogenic compound in the developing brain. Early administration of a 5-HT agonist could alter development of serotonergic circuitry, altering behaviors mediated by 5-HT signaling, including memory, fear and aggression. The present study was desi...

  19. DESIGN CONSIDERATIONS FOR THE MECHANICAL TUNER OF THE RHIC ELECTRON COOLER RF CAVITY.

    SciTech Connect

    RANK, J.; BEN-ZVI,I.; HAHN,G.; MCINTYRE,G.; DALY,E.; PREBLE,J.

    2005-05-16

    The ECX Project, Brookhaven Lab's predecessor to the RHIC e-Cooler, includes a prototype RF tuner mechanism capable of both coarse and fast tuning. This tuner concept, adapted originally from a DESY design, has longer stroke and significantly higher loads attributable to the very stiff ECX cavity shape. Structural design, kinematics, controls, thermal and RF issues are discussed and certain improvements are proposed.

  20. Analysis of colorectal adenocarcinoma tissue by desorption electrospray ionization mass spectrometric imaging.

    PubMed

    Gerbig, Stefanie; Golf, Ottmar; Balog, Julia; Denes, Julia; Baranyai, Zsolt; Zarand, Attila; Raso, Erzsebet; Timar, Jozsef; Takats, Zoltan

    2012-06-01

    Negative ion desorption electrospray ionization (DESI) was used for the analysis of an ex vivo tissue sample set comprising primary colorectal adenocarcinoma samples and colorectal adenocarcinoma liver metastasis samples. Frozen sections (12 μm thick) were analyzed by means of DESI imaging mass spectrometry (IMS) with spatial resolution of 100 μm using a computer-controlled DESI imaging stage mounted on a high resolution Orbitrap mass spectrometer. DESI-IMS data were found to predominantly feature complex lipids, including phosphatidyl-inositols, phophatidyl-ethanolamines, phosphatidyl-serines, phosphatidyl-ethanolamine plasmalogens, phosphatidic acids, phosphatidyl-glycerols, ceramides, sphingolipids, and sulfatides among others. Molecular constituents were identified based on their exact mass and MS/MS fragmentation spectra. An identified set of molecules was found to be in good agreement with previously reported DESI imaging data. Different histological tissue types were found to yield characteristic mass spectrometric data in each individual section. Histological features were identified by comparison to hematoxylin-eosin stained neighboring sections. Ions specific to certain histological tissue types (connective tissue, smooth muscle, healthy mucosa, healthy liver parenchyma, and adenocarcinoma) were identified by semi-automated screening of data. While each section featured a number of tissue-specific species, no potential global biomarker was found in the full sample set for any of the tissue types. As an alternative approach, data were analyzed by principal component analysis (PCA) and linear discriminant analysis (LDA) which resulted in efficient separation of data points based on their histological types. A pixel-by-pixel tissue identification method was developed, featuring the PCA/LDA analysis of authentic data set, and localization of unknowns in the resulting 60D, histologically assigned LDA space. Novel approach was found to yield results which are

  1. Developing repeatable measurements for reliable analysis of molecules at surfaces using desorption electrospray ionization.

    PubMed

    Green, F M; Stokes, P; Hopley, C; Seah, M P; Gilmore, I S; O'Connor, G

    2009-03-15

    Desorption electrospray ionization (DESI) is a powerful ambient ionization technique that can provide high-sensitivity mass spectrometry information directly from surfaces at ambient pressure. Although a growing amount of research has been devoted to exploring different applications, there are few studies investigating the basic parameters and underpinning metrology. An understanding of these is crucial to develop DESI as the robust and reliable technique required for significant uptake by industry. In this work, we begin with a systematic study of the parameters affecting the repeatability, sensitivity, and rate of consumption of material with DESI. To do this we have developed a model sample consisting of a thin uniform film of controlled thickness of Rhodamine B on glass. This model sample allowed assessment of optimal sensitivity and spot shape under different conditions. In addition, it allowed us to study the surface in more detail to understand why and how each parameter affects these. Using the model sample to optimize the instrument parameters for DESI led to an absolute intensity repeatability of better than 15%, achieved over a period of 1 day. This model sample provides valuable insight into the electrospray-sample interaction and the desorption mechanism. Confocal microscopy of areas analyzed by DESI allow droplet distribution, material utilization, and spot size to be determined. Studying surface erosion also gives the erosion rate of material, analogous to the sputtering yield in secondary ion mass spectrometry. The results of the study provide a clear description that explains the differences observed with changing electrospray parameters allowing optimization of the technique, for both spatial resolution and sensitivity. PMID:19281262

  2. Automated ambient desorption-ionization platform for surface imaging integrated with a commercial Fourier transform ion cyclotron resonance mass spectrometer.

    PubMed

    Pól, Jaroslav; Vidová, Veronika; Kruppa, Gary; Kobliha, Václav; Novák, Petr; Lemr, Karel; Kotiaho, Tapio; Kostiainen, Risto; Havlícek, Vladimír; Volný, Michael

    2009-10-15

    A fully automated atmospheric pressure ionization platform has been built and coupled with a commercial high-resolution Fourier transform ion cyclotron resonance mass spectrometer (FTICR-MS) instrument. The outstanding performance of this instrument allowed screening on the basis of exact masses in imaging mode. The main novel aspect was in the integration of the atmospheric pressure ionization imaging into the current software for matrix-assisted laser desorption ionization (MALDI) imaging, which allows the user of this commercial dual-source mass spectrometer to perform MALDI-MS and different ambient MS imaging from the same user interface and to utilize the same software tools. Desorption electrospray ionization (DESI) and desorption atmospheric pressure photoionization (DAPPI) were chosen to test the ambient surface imaging capabilities of this new ionization platform. Results of DESI imaging experiments performed on brain tissue sections are in agreement with previous MS imaging reports obtained by DESI imaging, but due to the high resolution and mass accuracy of the FTICR instrument it was possible to resolve several ions at the same nominal mass in the DESI-MS spectra of brain tissue. These isobaric interferences at low resolution are due to the overlap of ions from different lipid classes with different biological relevance. It was demonstrated that with the use of high-resolution MS fast imaging screening of lipids can be achieved without any preseparation steps. DAPPI, which is a relatively new and less developed ambient ionization technique compared to DESI, was used in imaging mode for the first time ever. It showed promise in imaging of phytocompounds from plant leaves, and selective ionization of a sterol lipid was achieved by DAPPI from a brain tissue sample.

  3. The Potential Use of Fermented Chickpea and Faba Bean Flour as Food Ingredients.

    PubMed

    Chandra-Hioe, Maria V; Wong, Christina H M; Arcot, Jayashree

    2016-03-01

    Apart from being a rich and inexpensive protein source, legumes provide essential vitamins, minerals and dietary fibre. Considering the nutritional benefits, legumes flour can potentially be incorporated in the development of new products. The aim of this study was to investigate whether fermentation affects the protein content, in vitro protein digestibility, trypsin inhibitor activity and the functionality of proteins in faba bean, desi and kabuli chickpea. Australian grown chickpea and faba bean were selected and initially soaked, de-hulled, dried and milled into flour. This was fermented with lyophilised yoghurt cultures in a 30 °C orbital shaker for 16 h. While protein contents in fermented desi and kabuli flour were lower than their raw counterparts (p > 0.05), it was significantly higher in fermented faba bean. A significant increase (9.5%) in in vitro protein digestibility was found in fermented desi. Trypsin inhibitor activity in fermented desi, kabuli and faba bean reduced by 2.7, 1.1 and 4.7%, respectively (p > 0.05). Overall, the in vitro protein digestibility in flour samples increased, while simultaneously reducing the trypsin inhibitor activity. The water absorption capacity of the fermented kabuli flour significantly increased by 11.3%. All fermented flour samples had significantly higher oil absorption capacity than their corresponding raw flour that was likely due to increased insoluble hydrophobic protein. Although, the foaming capacity in all fermented flour samples was significantly lower than their respective raw samples, only fermented desi and faba bean flour showed lower foaming stability (p > 0.05). The present study suggests that fermented legume flour could fulfill the demand for innovative products of higher nutritional value.

  4. The Potential Use of Fermented Chickpea and Faba Bean Flour as Food Ingredients.

    PubMed

    Chandra-Hioe, Maria V; Wong, Christina H M; Arcot, Jayashree

    2016-03-01

    Apart from being a rich and inexpensive protein source, legumes provide essential vitamins, minerals and dietary fibre. Considering the nutritional benefits, legumes flour can potentially be incorporated in the development of new products. The aim of this study was to investigate whether fermentation affects the protein content, in vitro protein digestibility, trypsin inhibitor activity and the functionality of proteins in faba bean, desi and kabuli chickpea. Australian grown chickpea and faba bean were selected and initially soaked, de-hulled, dried and milled into flour. This was fermented with lyophilised yoghurt cultures in a 30 °C orbital shaker for 16 h. While protein contents in fermented desi and kabuli flour were lower than their raw counterparts (p > 0.05), it was significantly higher in fermented faba bean. A significant increase (9.5%) in in vitro protein digestibility was found in fermented desi. Trypsin inhibitor activity in fermented desi, kabuli and faba bean reduced by 2.7, 1.1 and 4.7%, respectively (p > 0.05). Overall, the in vitro protein digestibility in flour samples increased, while simultaneously reducing the trypsin inhibitor activity. The water absorption capacity of the fermented kabuli flour significantly increased by 11.3%. All fermented flour samples had significantly higher oil absorption capacity than their corresponding raw flour that was likely due to increased insoluble hydrophobic protein. Although, the foaming capacity in all fermented flour samples was significantly lower than their respective raw samples, only fermented desi and faba bean flour showed lower foaming stability (p > 0.05). The present study suggests that fermented legume flour could fulfill the demand for innovative products of higher nutritional value. PMID:26880215

  5. The quantitative surface analysis of an antioxidant additive in a lubricant oil matrix by desorption electrospray ionization mass spectrometry

    PubMed Central

    Da Costa, Caitlyn; Reynolds, James C; Whitmarsh, Samuel; Lynch, Tom; Creaser, Colin S

    2013-01-01

    RATIONALE Chemical additives are incorporated into commercial lubricant oils to modify the physical and chemical properties of the lubricant. The quantitative analysis of additives in oil-based lubricants deposited on a surface without extraction of the sample from the surface presents a challenge. The potential of desorption electrospray ionization mass spectrometry (DESI-MS) for the quantitative surface analysis of an oil additive in a complex oil lubricant matrix without sample extraction has been evaluated. METHODS The quantitative surface analysis of the antioxidant additive octyl (4-hydroxy-3,5-di-tert-butylphenyl)propionate in an oil lubricant matrix was carried out by DESI-MS in the presence of 2-(pentyloxy)ethyl 3-(3,5-di-tert-butyl-4-hydroxyphenyl)propionate as an internal standard. A quadrupole/time-of-flight mass spectrometer fitted with an in-house modified ion source enabling non-proximal DESI-MS was used for the analyses. RESULTS An eight-point calibration curve ranging from 1 to 80 µg/spot of octyl (4-hydroxy-3,5-di-tert-butylphenyl)propionate in an oil lubricant matrix and in the presence of the internal standard was used to determine the quantitative response of the DESI-MS method. The sensitivity and repeatability of the technique were assessed by conducting replicate analyses at each concentration. The limit of detection was determined to be 11 ng/mm2 additive on spot with relative standard deviations in the range 3–14%. CONCLUSIONS The application of DESI-MS to the direct, quantitative surface analysis of a commercial lubricant additive in a native oil lubricant matrix is demonstrated. © 2013 The Authors. Rapid Communications in Mass Spectrometry published by John Wiley & Sons, Ltd. PMID:24097398

  6. Integration of electrochemistry with ultra-performance liquid chromatography/mass spectrometry.

    PubMed

    Cai, Yi; Zheng, Qiuling; Liu, Yong; Helmy, Roy; Loo, Joseph A; Chen, Hao

    2015-01-01

    This study presents the development of ultra-performance liquid chromatography (UPLC) mass spectrometry (MS) combined with electrochemistry (EC) for the first time and its application for the structural analysis of proteins/peptides that contain disulfide bonds. In our approach, a protein/peptide mixture sample undergoes a fast UPLC separation and subsequent electrochemical reduction in an electrochemical flow cell followed by online MS and tandem mass spectrometry (MS/MS) analyses. The electrochemical cell is coupled to the mass spectrometer using our recently developed desorption electrospray ionization (DESI) interface. Using this UPLC/EC/DESI-MS method, peptides that contain disulfide bonds can be differentiated from those without disulfide bonds, as the former are electroactive and reducible. MS/MS analysis of the disulfide-reduced peptide ions provides increased information on the sequence and disulfide-linkage pattern. In a reactive DESI- MS detection experiment in which a supercharging reagent was used to dope the DESI spray solvent, increased charging was obtained for the UPLC-separated proteins. Strikingly, upon online electrolytic reduction, supercharged proteins (e.g., α-lactalbumin) showed even higher charging, which will be useful in top- down protein structure MS analysis as increased charges are known to promote protein ion dissociation. Also, the separation speed and sensitivity are enhanced by approximately 1(~)2 orders of magnitude by using UPLC for the liquid chromatography (LC)/EC/MS platform, in comparison to the previously used high- performance liquid chromatography (HPLC). This UPLC/EC/DESI-MS method combines the power of fast UPLC separation, fast electrochemical conversion, and online MS structural analysis for a potentially valuable tool for proteomics research and bioanalysis.

  7. Chemical Analysis of Complex Organic Mixtures Using Reactive Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Laskin, Julia; Eckert, Peter A.; Roach, Patrick J.; Heath, Brandi S.; Nizkorodov, Sergey A.; Laskin, Alexander

    2012-08-21

    Reactive nanospray desorption electrospray ionization (nano-DESI) combined with high-resolution mass spectrometry was utilized for the analysis of secondary organic aerosol produced through ozonolysis of limonene (LSOA). Previous studies showed that LSOA constituents are multifunctional compounds containing aldehyde and ketone groups. In this study, we used the selectivity of the Girard T (GT) reagent towards carbonyl compounds to examine the utility of reactive nano-DESI for the analysis of complex organic mixtures. In these experiments, 1-100 {micro}M GT solution was used as a working solvent for reactive nano-DESI analysis. Abundant products of a single addition of GT to LSOA constituents were observed at GT concentrations in excess of 10 {micro}M. We found that LSOA compounds with 18-20 carbon atoms (dimers) and 27-30 carbon atoms (trimers) react with GT through a simple addition reaction resulting in formation of the carbinolamine derivative. In contrast, reactions of GT with monomeric species result in formation of both the carbinolamine and the hydrazone derivatives. In addition, several monomers did not react with GT on the timescale of our experiment. These molecules were characterized by relatively high values of the double bond equivalent (DBE) and low oxygen content. Furthermore, because addition of a charged GT tag to a neutral molecule eliminates the discrimination against the low proton affinity compounds in the ionization process, reactive nano-DESI analysis enables quantification of individual compounds in the complex mixture. For example, we were able to estimate for the first time the amounts of dimers and trimers in the LSOA mixture. Specifically, we found that the most abundant LSOA dimer was detected at ca. 0.5 pg level and the total amount of dimers and trimers in the analyzed sample was just around 11 pg. Our results indicate that reactive nano-DESI is a valuable approach for examining the presence of specific functional groups and

  8. Chemical analysis of complex organic mixtures using reactive nanospray desorption electrospray ionization mass spectrometry.

    PubMed

    Laskin, Julia; Eckert, Peter A; Roach, Patrick J; Heath, Brandi S; Nizkorodov, Sergey A; Laskin, Alexander

    2012-08-21

    Reactive nanospray desorption electrospray ionization (nano-DESI) combined with high-resolution mass spectrometry was utilized for the analysis of secondary organic aerosol produced through ozonolysis of limonene (LSOA). Previous studies have shown that LSOA constituents are multifunctional compounds containing at least one aldehyde or ketone groups. In this study, we used the selectivity of the Girard's reagent T (GT) toward carbonyl compounds to examine the utility of reactive nano-DESI for the analysis of complex organic mixtures. In these experiments, 1-100 μM GT solutions were used as the working solvents for reactive nano-DESI analysis. Abundant products from the single addition of GT to LSOA constituents were observed at GT concentrations in excess of 10 μM. We found that LSOA dimeric and trimeric compounds react with GT through a simple addition reaction resulting in formation of the carbinolamine derivative. In contrast, reactions of GT with monomeric species result in the formation of both the carbinolamine and the hydrazone derivatives. In addition, several monomers did not react with GT on the time scale of our experiment. These molecules were characterized by relatively high values of the double bond equivalent and low oxygen content. Furthermore, because addition of a charged GT tag to a neutral molecule eliminates the discrimination against the low proton affinity compounds in the ionization process, reactive nano-DESI analysis enables quantification of individual compounds in the complex mixture. For example, we were able to estimate for the first time the amounts of dimers and trimers in the LSOA mixture. Specifically, we found that the most abundant LSOA dimer was detected at the ~0.5 pg level and the total amount of dimers and trimers in the analyzed sample was ~11 pg. Our results indicate that reactive nano-DESI is a valuable approach for examining the presence of specific functional groups and for the quantification of compounds possessing

  9. Characterization of Ce SUP 3+-tributyl phosphate coordination complexes produced by fused droplet electrospray ionization with a target capillary

    SciTech Connect

    Gary S. Groenewold; Jean-Jacques Gaumet

    2011-12-01

    Coordination complexes containing Ce(III) and tri-n-butyl phosphate (TBP) in the 1+, 2+ and 3+ charge states were generated using desorption electrospray ionization (DESI) mass spectrometry, in which the analyte solutions were supplied via a target capillary orthogonally situated with respect to the electrospray. Comparison with direct electrospray (ESI) showed that the same coordination complexes were produced in each experiment, and could be described by the general formula [Ce(NO3)m=0-2(TBP)n](3-m)+. This result indicates that DESI has utility for measuring metal speciation for metal ligand solutions where the gas-phase complexes generated by ESI have been correlated with solution speciation. Such an application would be useful for analyses where it is desirable to limit the total amount of metal being handled, or that have solvent systems that are not readily amenable to ESI. Both the direct ESI and DESI mass spectra showed similar trends with respect to the TBP:Ce ratio, viz. high values tend to favor formation of a larger fraction of the 1+ species, and the 2+ and 3+ species become relatively more important as the ratio is decreased. Within individual charge state ion envelopes, lower TBP:Ce ratios produce coordination complexes with fewer ligands, a trend also seen using both approaches. These trends again point toward strong similarity between the direct ESI and DESI analyses of the metal-ligand solutions. The DESI experiments were less sensitive for measuring the coordination complexes compared to the direct ESI experiments, by a factor of 10 - 100 depending on whether minimum detectable concentration or absolute ion abundances were considered. Nevertheless, mid-picomolar quantities of coordination complexes were measured using the target capillary, indicating that sensitivity would be sufficient for measuring species in many industrial separations processes.

  10. Higher Order Modes in Third Harmonic Cavities for XFEL/FLASH

    SciTech Connect

    Shinton, I.R.R.; Baboi, N.; Eddy, N.; Flisgen, T.; Glock, H.W.; Jones, R.M.; Juntong, N.; Khabiboulline, T.N.; van Rienen, U; Zhang, P.; /Manchester U. /DESY /Cockcroft Inst. Accel. Sci. Tech.

    2010-06-01

    We analyse higher order modes in the 3.9 GHz bunch shaping cavities recently installed in the FLASH facility at DESY. We report on recent experimental results on the frequency spectrum from probe based measurements made at CMTB at DESY. These are compared to those predicted by finite difference and finite element computer codes. This study is focused mainly on the dipole component of the multi-pole expansion of the wakefield. The modes are readily identifiable as single-cavity modes provided the frequencies of these modes are below the cut-off of the inter-connecting beam pipes. The modes above cut-off are coupled to the 4 cavities and are distinct from single cavity modes.

  11. Exploring dark matter microphysics with galaxy surveys

    SciTech Connect

    Escudero, Miguel; Mena, Olga; Vincent, Aaron C.; Wilkinson, Ryan J.; Boehm, Céline E-mail: omena@ific.uv.es E-mail: ryan.wilkinson@durham.ac.uk

    2015-09-01

    We use present cosmological observations and forecasts of future experiments to illustrate the power of large-scale structure (LSS) surveys in probing dark matter (DM) microphysics and unveiling potential deviations from the standard ΛCDM scenario. To quantify this statement, we focus on an extension of ΛCDM with DM-neutrino scattering, which leaves a distinctive imprint on the angular and matter power spectra. After finding that future CMB experiments (such as COrE+) will not significantly improve the constraints set by the Planck satellite, we show that the next generation of galaxy clustering surveys (such as DESI) could play a leading role in constraining alternative cosmologies and even have the potential to make a discovery. Typically we find that DESI would be an order of magnitude more sensitive to DM interactions than Planck, thus probing effects that until now have only been accessible via N-body simulations.

  12. What Is the Opposite of Pandora’s Box? Direct Analysis, Ambient Ionization, and a New Generation of Atmospheric Pressure Ion Sources

    PubMed Central

    B. Cody, Robert

    2013-01-01

    The introduction of DART and DESI sources approximately seven years ago led to the development of a new series of atmospheric pressure ion sources referred to as “ambient ionization” sources. These fall into two major categories: spray techniques like DESI or plasma techniques like DART. The selectivity of “direct ionization,” meaning analysis without chromatography and with little or no sample preparation, depends on the mass spectrometer selectivity. Although high resolution and tandem mass spectrometry are valuable tools, rapid and simple sample preparation methods can improve the utility of ambient ionization methods. The concept of ambient ionization has led to the realization that there are many more ways to form ions than might be expected. An interesting example is the use of a flint-and-steel spark source to generate ions from compounds such as phenolphthalein and Gramicidin S. PMID:24349926

  13. FPGA-based Klystron linearization implementations in scope of ILC

    DOE PAGES

    Omet, M.; Michizono, S.; Matsumoto, T.; Miura, T.; Qiu, F.; Chase, B.; Varghese, P.; Schlarb, H.; Branlard, J.; Cichalewski, W.

    2015-01-23

    We report the development and implementation of four FPGA-based predistortion-type klystron linearization algorithms. Klystron linearization is essential for the realization of ILC, since it is required to operate the klystrons 7% in power below their saturation. The work presented was performed in international collaborations at the Fermi National Accelerator Laboratory (FNAL), USA and the Deutsches Elektronen Synchrotron (DESY), Germany. With the newly developed algorithms, the generation of correction factors on the FPGA was improved compared to past algorithms, avoiding quantization and decreasing memory requirements. At FNAL, three algorithms were tested at the Advanced Superconducting Test Accelerator (ASTA), demonstrating a successfulmore » implementation for one algorithm and a proof of principle for two algorithms. Furthermore, the functionality of the algorithm implemented at DESY was demonstrated successfully in a simulation.« less

  14. Development and quality evaluation of aonla mouth freshner.

    PubMed

    Barwal, Vishal Singh; Garg, Vivek; Sharma, Rakesh

    2010-12-01

    Nutritive and palatable mouth freshners were prepared from dehydrated aonla (Emblica officinalis Gaertn) pulp of 'Desi' and 'Banarsi' cultivars by mixing carboxy methyl cellulose, gums, arecanut, cardamom, sugar and milk powder at different proportions as a substitute for pan masala, tobacco and gutka. Mouth fresheners developed were packed in high density polyethylene pouches (HDPE, 100 gauge), stored at ambient conditions (8-20 °C, 60%RH) and analysed for physico-chemical and sensory quality attributes at different storage intervals. During storage for 6 months, ascorbic acid and overall acceptability of mouth freshener decreased (p ≤ 0.05) and moisture content increased. The equivalent relative humidity of mouth freshener was 49% and 53% in 'Desi' and 'Banarsi' cultivars, respectively. Despite the changes observed in various physico- chemical and sensory attributes, the overall sensory quality attributes of mouth freshners remained acceptable. PMID:23572710

  15. Effects of gamma irradiation on the shoot length of Cicer seeds [rapid communication

    NASA Astrophysics Data System (ADS)

    Toker, Cengiz; Uzun, Bulent; Canci, Huseyin; Oncu Ceylan, F.

    2005-08-01

    The effects of radiation on the shoot and root lengths of germinated seedling of irradiated seeds of Cicer species, i.e. three kabuli types and four desi types of cultivated chickpea ( Cicer arietinum Ladiz.) and 2 annual wild types ( C. reticulatum Ladiz. and C. bijugum K.H. Rech.) were investigated. The seeds were irradiated with a 60Co gamma source using 0, 200, 300 and 400 Gy doses at 1.66 kGy h -1. At 200 Gy minor effects could be observed, but at 400 Gy an obvious depression of shoot length was observed. The kabuli types were more affected than the desi ones. The critical dose that prevented the shoot and root elongation varied among species and also ranged from genotypes to genotype within species.

  16. 3.9 GHz superconducting accelerating 9-cell cavity vertical test results

    SciTech Connect

    Khabiboulline, Timergali; Cooper, Charles; Dhanaraj, Nandhini; Edwards, Helen; Foley, Mike; Harms, Elvin; Mitchell, Donald; Rowe, Allan; Solyak, Nikolay; Moeller, Wolf-Dietrich; /DESY

    2007-06-01

    The 3rd harmonic 3.9GHz accelerating cavity was proposed to improve the beam performance of the FLASH (TTF/DESY) facility [1]. In the frame of a collaborative agreement, Fermilab will provide DESY with a cryomodule containing a string of four cavities. In addition, a second cryomodule with one cavity will be fabricated for installation in the Fermilab photo-injector, which will be upgraded for the ILC accelerator test facility. The first 9-cell Nb cavities were tested in a vertical setup and they didn't reach the designed accelerating gradient [2]. The main problem was a multipactor in the HOM couplers, which lead to overheating and quenching of the HOM couplers. New HOM couplers with improved design are integrated in the next 9-cell cavities. In this paper we present all results of the vertical tests.

  17. An innovative method based on quick, easy, cheap, effective, rugged, and safe extraction coupled to desorption electrospray ionization-high resolution mass spectrometry for screening the presence of paralytic shellfish toxins in clams.

    PubMed

    Mattarozzi, Monica; Bianchi, Federica; Milioli, Marco; Cavazza, Antonella; Careri, Maria

    2016-01-15

    The capabilities of desorption electrospray ionization-high resolution mass spectrometry (DESI-HRMS) were tested for screening the presence of some paralytic shellfish toxins in clams. A quick, easy, cheap, effective, rugged, and safe (QuEChERS) approach is proposed for sample clean-up. QuEChERS extraction was optimized by using a full factorial design followed by the multicriteria method of the desirability functions. Quantitation limits in the microgram per kilogram range proved reliability of the method for the detection of the investigated toxins in accordance to the rules laid down by European legislation. The optimized QuEChERS-DESI-HRMS based-method allowed for a rapid reliable screening of the investigated compounds at levels of interest, thus being useful for high-throughput analyses. PMID:26592627

  18. Eddy current scanning at Fermilab

    SciTech Connect

    Boffo, C.; Bauer, P.; Foley, M.; Brinkmann, A.; Ozelis, J.; /Jefferson Lab

    2005-07-01

    In the framework of SRF cavity development, Fermilab is creating the infrastructure needed for the characterization of the material used in the cavity fabrication. An important step in the characterization of ''as received'' niobium sheets is the eddy current scanning. Eddy current scanning is a non-destructive technique first adopted and further developed by DESY with the purpose of checking the cavity material for sub-surface defects and inclusions. Fermilab has received and further upgraded a commercial eddy current scanner previously used for the SNS project. The upgrading process included developing new filtering software. This scanner is now used daily to scan the niobium sheets for the Fermilab third harmonic and transverse deflecting cavities. This paper gives a status report on the scanning results obtained so far, including a discussion of the typology of signals being detected. We also report on the efforts to calibrate this scanner, a work conducted in collaboration with DESY.

  19. Test stands for testing serial XFEL accelerator modules

    NASA Astrophysics Data System (ADS)

    Bozhko, Yury; Anashin, Vadim; Belova, Lyudmila; Boeckmann, Torsten Axel; Kholopov, Michail; Konstantinov, Valeriy; Petersen, Bernd; Pivovarov, Sergey; Pyata, Eugeny; Sellmann, Detlef; Wang, Xilong; Zhirnov, Anatoly; Zolotov, Anatoly

    2012-06-01

    The superconducting accelerator module is the key component of the European X-ray Free Electron Laser (XFEL) project to be built at DESY Hamburg. The XFEL linear accelerator will consist of 100 accelerator modules in order to produce pulsed electron beam with the energy of 17.5 GeV. All accelerator modules have to be tested after the assembly and before being installed in the accelerator tunnel. The tests will take place in the Accelerator Module Test Facility (AMTF) being constructed at DESY. Besides test stands for testing superconducting cavities and magnets constituting the accelerator modules, AMTF will come with three test stands for testing the completed accelerator modules. This paper describes layout of the test stands within the AMTF, cryogenic design of the test stand, design issues of principal components and schedule.

  20. QUENCH STUDIES AND PREHEATING ANALYSIS OF SEAMLESS

    SciTech Connect

    Palczewski, Ari; Geng, Rongli; Eremeev, Grigory

    2013-09-01

    One of the alternative manufacturing technologies for SRF cavities is hydroforming from seamless tubes. Although this technology has produced cavities with gradient and Q-values comparable to standard EBW/EP cavities, a few questions remain. One of these questions is whether the quench mechanism in hydroformed cavities is the same as in standard electron beam welded cavities. Towards this effort Jefferson Lab performed quench studies on 2 9 cell seamless hydroformed cavities. These cavities include DESY's - Z163 and Z164 nine-cell cavities hydroformed at DESY. Initial Rf test results Z163 were published in SRF2011. In this report we will present post JLAB surface re-treatment quench studies for each cavity. The data will include OST and T-mapping quench localization as well as quench location preheating analysis comparing them to the observations in standard electron beam welded cavities.

  1. A 1.8 K test facility for superconducting RF cavities

    SciTech Connect

    Horlitz, G.; Knopf, U.; Lange, R.; Petersen, B.; Sellmann, D.; Trines, D.; Peterson, T.

    1994-04-01

    To demonstrate the feasibility of superconducting RF technology for a high energy e{sup +}/e{sup {minus}} collider, a research and development program has begun with collaborators from Europe, Asia, and North America. The immediate goal of the R&D program is to build and operate a 50 meter-long linac at DESY with 1.3 GHz superconducting RF cavities at a temperature of 1.8 K - 2.0 K and an accelerating gradient of 15 MV/meter. The refrigeration for the test system at DESY initially will have a capacity of about 100 W at 1.8 K, distributed among three test cryostats. In a second step, refrigeration will be upgraded to 200 W at 1.8 K in order to supply the 50 meter test linac. This paper describes the cryogenics of this test system.

  2. FPGA-based Klystron linearization implementations in scope of ILC

    SciTech Connect

    Omet, M.; Michizono, S.; Varghese, P.; Schlarb, H.; Branlard, J.; Cichalewski, W.

    2015-01-23

    We report the development and implementation of four FPGA-based predistortion-type klystron linearization algorithms. Klystron linearization is essential for the realization of ILC, since it is required to operate the klystrons 7% in power below their saturation. The work presented was performed in international collaborations at the Fermi National Accelerator Laboratory (FNAL), USA and the Deutsches Elektronen Synchrotron (DESY), Germany. With the newly developed algorithms, the generation of correction factors on the FPGA was improved compared to past algorithms, avoiding quantization and decreasing memory requirements. At FNAL, three algorithms were tested at the Advanced Superconducting Test Accelerator (ASTA), demonstrating a successful implementation for one algorithm and a proof of principle for two algorithms. Furthermore, the functionality of the algorithm implemented at DESY was demonstrated successfully in a simulation.

  3. What Is the Opposite of Pandora's Box? Direct Analysis, Ambient Ionization, and a New Generation of Atmospheric Pressure Ion Sources.

    PubMed

    B Cody, Robert

    2013-01-01

    The introduction of DART and DESI sources approximately seven years ago led to the development of a new series of atmospheric pressure ion sources referred to as "ambient ionization" sources. These fall into two major categories: spray techniques like DESI or plasma techniques like DART. The selectivity of "direct ionization," meaning analysis without chromatography and with little or no sample preparation, depends on the mass spectrometer selectivity. Although high resolution and tandem mass spectrometry are valuable tools, rapid and simple sample preparation methods can improve the utility of ambient ionization methods. The concept of ambient ionization has led to the realization that there are many more ways to form ions than might be expected. An interesting example is the use of a flint-and-steel spark source to generate ions from compounds such as phenolphthalein and Gramicidin S. PMID:24349926

  4. Associated production of heavy quarkonia and electroweak bosons at present and future colliders

    NASA Astrophysics Data System (ADS)

    Kniehl, Bernd A.; Palisoc, Caesar P.; Zwirner, Lennart

    2002-12-01

    We investigate the associated production of heavy quarkonia, with angular-momentum quantum numbers 2S+1LJ=1S0,3S1,1P1,3PJ (J=0,1,2), and photons, Z bosons, and W bosons in photon-photon, photon-hadron, and hadron-hadron collisions within the factorization formalism of nonrelativistic quantum chromodynamics providing all contributing partonic cross sections in analytic form. In the case of photoproduction, we also include the resolved-photon contributions. We present numerical results for the processes involving J/ψ and χcJ mesons appropriate for the Fermilab Tevatron, CERN LHC, DESY TESLA, operated in the e+e- and γγ modes, and DESY THERA.

  5. Neuausrichtung und Konsolidierung

    NASA Astrophysics Data System (ADS)

    Grohmann, Heinz

    Mit der Wahl von Wolfgang Wetzel zum Vorsitzenden der Deutschen Statistischen Gesellschaft im Jahre 1972 begann eine 32jährige Ära, in der die praktische und die theoretische Statistik in einem ausgewogenen Verhältnis gepflegt wurden. Ein regelmäßiger vierjähriger Wechsel im Vorsitz stärkte die Gemeinschaft und die praktische wie die wissenschaftliche Arbeit gleichermaßen. Die jährlichen Hauptversammlungen behandelten gesellschaftlich aktuelle wie zukunftsorientierte Themen, und die Ausschüsse sowie weitere Veranstaltungen gaben Gelegenheit zur Förderung und Pflege einer Vielzahl von Arbeitsgebieten der Statistik. Darüber wird nicht nur in diesem Kapitel, sondern auch in den Teilen II und III des Bandes berichtet.

  6. VDI-Richtlinien - mit Technischen Regeln Wirtschaftlichkeit erhöhen und Standards setzen

    NASA Astrophysics Data System (ADS)

    Mandelartz, Johannes

    Der Verein Deutscher Ingenieure e.V. (VDI) ist ein gemeinnütziger, wirtschaftlich und politisch unabhängiger, technisch-wissenschaftlicher Verein von Ingenieuren und Naturwissenschaftlern. Mit über 137 000 persönlich zugeordneten Mitgliedern ist er eine der größten Ingenieur-Vereinigungen Europas und gilt in Deutschland als führender Sprecher der Technik und der Ingenieure. 1856 gegründet, hat er viele für die Technik wesentliche Entwicklungen in Gang gesetzt, so im Bereich der technischen Überwachung, der technischen Regelsetzung und Normung, der Arbeitsstudien, im gewerblichen Rechtsschutz und im Patentwesen. Seit seiner Gründung sieht es der VDI als seine Aufgabe, "das Zusammenwirken aller geistiger Kräfte der Technik im Bewusstsein ethischer Verantwortung zu fördern“ und die Lebensmöglichkeiten aller Menschen durch Entwicklung und sinnvoller Anwendung technischer Mittel zu verbessern.

  7. [A failed experiment - Carl Friedrich von Weizsäcker, Jürgen Habermas and the Max-Planck Society].

    PubMed

    Leendertz, Ariane

    2014-01-01

    From 1970 to 1980 Carl Friedrich von Weizsäcker headed the Max-Planck-lnstitut zur Erforschung der Lebensbedingungen der wissenschaftlich-technischen Welt (MPI for the study of the living conditions of the world of science and technology) in Starnberg, jointly with Jürgen Habermas since 1971. From the start, the Max Planck Society regarded the new institute as an experiment that might perhaps be aborted a few years later. This is exactly what happened. With the retirement of Weizsäcker, his section was closed and the whole institute was renamed. In 1981. Habermas resigned, and then the institute was closed. This paper focusses on some of the problem constellations within the institute that partly explain its development and eventual closure: its birth out of the idea of scientific policy advice, the debates within the Max Planck Society and the complex relationship between Weizsäcker and Jürgen Habermas.

  8. Räumliches Hören

    NASA Astrophysics Data System (ADS)

    Blauert, Jens; Braasch, Jonas

    Unsere Hörereignisse (Hörobjekte, Laute) existieren jeweils zu ihrer Zeit an ihrem Ort und sind mit jeweils spezifischen Eigenschaften ausgerüstet. "Räumliches Hören“ als wissenschaftliches Fachgebiet erforscht und beschreibt die Beziehungen zwischen den Orten sowie den räumlichen Ausdehnungen der Hörereignisse untereinander und zu den korrelierten Merkmalen anderer Ereignisse - vorwiegend Schallereignisse, aber z. B. auch physiologische Vorgänge, Ereignisse anderer Sinnesgebiete usw. (s. hierzu Blauert 1974 etc., woraus einige der folgenden Bilder entnommen sind). Übersichtsdarstellungen findet man z. B. auch bei (Bloch 1893, Pierce 1901, von Hornbostel 1926, Trimble 1928, Kietz 1953, Woodworth u. Schlosberg 1954, von Békésy 1960, Aschoff 1963, Keidel 1966, Erulkar 1972, Durlach u. Colburn 1978, Gatehouse 1979, Blauert 1983, Yost u. Gourevitch 1987, Wightman u. Kistler 1993, Begault 1994, Gilkey u. Anderson 1996).

  9. elecTUM: Umsetzung der eLearning-Strategie der Technischen Universität München

    NASA Astrophysics Data System (ADS)

    Rathmayer, Sabine; Gergintchev, Ivan

    An der TUM wurde ein umfassendes und integriertes eLearning-Konzept umgesetzt, welches Präsenzstudium und eLearning in allen Leistungsbereichen der Universität miteinander verzahnt. Ein besonderer Schwerpunkt lag dabei in der Schaffung einer effizienten und wettbewerbsfähigen integrierten eLearning Infrastruktur in Hinblick auf die noch weiter steigenden Studienanfängerzahlen ab dem Jahr 2011 sowie die Umsetzung von eBologna. Die Etablierung einer hochschulweiten Lernplattform stellte eine wesentliche Basis für die Umsetzung der eLearning-Strategie dar. Die wissenschaftliche und wirtschaftliche Anschlussfähigkeit im Hinblick auf eine Verwertung der Projektergebnisse wurde durch die aktive Beteiligung an einer Vielzahl hochschulübergreifender Arbeitskreise, Fachtagungen und Kooperationen, vor allem über Organisations- und Dienstleistungsmodelle sowie innovative technische Entwicklungen, sichergestellt.

  10. Desorption electro-flow focusing ionization of explosives and narcotics for ambient pressure mass spectrometry.

    PubMed

    Forbes, Thomas P; Brewer, Tim M; Gillen, Greg

    2013-10-01

    Desorption electro-flow focusing ionization (DEFFI), a desorption-based ambient ion source, was developed, characterized, and evaluated as a possible source for field deployable ambient pressure mass spectrometry (APMS). DEFFI, based on an electro-flow focusing system, provides a unique configuration for the generation of highly charged energetic droplets for sample analysis and ionization. A concentrically flowing carrier gas focuses the liquid emanating from a capillary through a small orifice, generating a steady fluid jet. An electric field is applied across this jet formation region, producing high velocity charged droplets that impinge on an analyte laden surface. This configuration separates the jet charging region from the external environment, eliminating detrimental effects from droplet space charge or target surface charging. The sample desorption and ionization processes operate similar to desorption electrospray ionization (DESI). DEFFI demonstrated strong signal intensities and improved signal-to-noise ratios in both positive and negative mode mass spectrometry for narcotics, i.e., cocaine, and explosives, i.e., cyclotrimethylenetrinitramine (RDX), respectively. A characterization of DEFFI ionization mechanisms identified operation regimes of both electrospray and corona discharge based analyte ionization, as well as limitations in overall signal. In addition, the DEFFI response was directly compared to DESI-MS under similar operating conditions. This comparison established a wider and more stable optimal operating range, while requiring an order of magnitude lower applied gas pressure and applied potential for DEFFI than DESI. These reductions are due to the physical mode of jet formation and geometric configuration differences between DEFFI and DESI, pointing to a potential benefit of DEFFI-MS for field implementation.

  11. Data acqusition for the Zeus central tracking detector

    SciTech Connect

    Quinton, S.

    1989-04-01

    The Zeus experiment is being installed on the Hera electron-proton collider being built at the Desy laboratory in Hamburg. The high beam crossover rate of the Hera machine will provide experience in data acquisition and triggering relevant to the SSC environment. This paper describes the Transputer based data acquisition for the Zeus Central Tracking Detector, and outlines some proposed development work on the use of parallel processing techniques in this field.

  12. Experimental Plans to Explore Dielectric Wakefield Acceleration in the THZ Regime

    SciTech Connect

    Lemery, F.; Mihalcea, D.; Piot, P.; Behrens, C.; Elsen, E.; Flottmann, K.; Gerth, C.; Kube, G.; Schmidt, B.; Osterhoff, J.; Stoltz, P.

    2011-09-07

    Dielectric wakefield accelerators have shown great promise toward high-gradient acceleration. We investigate the performances of a possible experiment under consideration at the FLASH facility in DESY to explore wakefield acceleration with an enhanced transformer ratio. The experiment capitalizes on a unique pulse shaping capability recently demonstrated at this facility. In addition, the facility incorporates a superconducting linear accelerator that could generate bunch trains with closely spaced bunches thereby opening the exploration of potential dynamical effects in dielectric wakefield accelerators.

  13. Diffractive Higgs boson production at the Fermilab Tevatron and the CERN Large Hadron Collider.

    PubMed

    Enberg, R; Ingelman, G; Kissavos, A; Tîmneanu, N

    2002-08-19

    Improved possibilities to find the Higgs boson in diffractive events, having less hadronic activity, depend on whether the cross section is large enough. Based on the soft color interaction models that successfully describe diffractive hard scattering at DESY HERA and the Fermilab Tevatron, we find that only a few diffractive Higgs events may be produced at the Tevatron, but we predict a substantial rate at the CERN Large Hadron Collider.

  14. Current experiments in elementary-particle physics - March 1983

    SciTech Connect

    Wohl, C.G.; Armstrong, F.E.; Rittenberg, A.

    1983-03-01

    Microfiche are included which contain summaries of 479 experiments in elementary particle physics. Experiments are included at the following laboratories: Brookhaven (BNL); CERN; CESR; DESY; Fermilab (FNAL); Institute for Nuclear Studies (INS); KEK; LAMPF; Serpukhov (SERP); SIN; SLAC; and TRIUMF. Also, summaries of proton decay experiments are included. A list of experiments and titles is included; and a beam-target-momentum index and a spokesperson index are given. Properties of beams at the facilities are tabulated. (WHK)

  15. Bunch length measurement at the Fermilab A0 photoinjector using a Martin-Puplett interferometer

    SciTech Connect

    Thurman-Keup, Randy; Fliller, Raymond Patrick; Kazakevich, Grigory; /Fermilab

    2008-05-01

    We present preliminary measurements of the electron bunch lengths at the Fermilab A0 Photoinjector using a Martin-Puplett interferometer on loan from DESY. The photoinjector provides a relatively wide range of bunch lengths through laser pulse width adjustment and compression of the beam using a magnetic chicane. We present comparisons of data with simulations that account for diffraction distortions in the signal and discuss future plans for improving the measurement.

  16. Physics results from polarized DIS.

    SciTech Connect

    Ramsey, G. P.

    1998-03-23

    We have extracted polarized nucleon distributions from recent data at CERN, SLAC and DESY. The flavor-dependent valence and sea quark spin distributions are determined for each experiment. We take into account possible differences in the up and down sea distributions, and assume that the strange sea contribution is suppressed by mass effects. Physics results determined from different experiments are compared, including higher order corrections.

  17. Experimental Program Final Technical Progress Report: 15 February 2007 to 30 September 2012

    SciTech Connect

    Kinney, Edward R.

    2014-09-12

    This is the final technical report of the grant DE-FG02-04ER41301 to the University of Colorado at Boulder entitled "Intermediate Energy Nuclear Physics" and describes the results of our funded activities during the period 15 February 2007 to 30 September 2012. These activities were primarily carried out at Fermilab, RHIC, and the German lab DESY. Significant advances in these experiments were carried out by members of the Colorado group and are described in detail.

  18. Investigation of some biologically relevant redox reactions using electrochemical mass spectrometry interfaced by desorption electrospray ionization.

    PubMed

    Lu, Mei; Wolff, Chloe; Cui, Weidong; Chen, Hao

    2012-04-01

    Recently we have shown that, as a versatile ionization technique, desorption electrospray ionization (DESI) can serve as a useful interface to combine electrochemistry (EC) with mass spectrometry (MS). In this study, the EC/DESI-MS method has been further applied to investigate some aqueous phase redox reactions of biological significance, including the reduction of peptide disulfide bonds and nitroaromatics as well as the oxidation of phenothiazines. It was found that knotted/enclosed disulfide bonds in the peptides apamin and endothelin could be electrochemically cleaved. Subsequent tandem MS analysis of the resulting reduced peptide ions using collision-induced dissociation (CID) and electron-capture dissociation (ECD) gave rise to extensive fragment ions, providing a fast protocol for sequencing peptides with complicated disulfide bond linkages. Flunitrazepam and clonazepam, a class of nitroaromatic drugs, are known to undergo reduction into amines which was proposed to involve nitroso and N-hydroxyl intermediates. Now in this study, these corresponding intermediate ions were successfully intercepted and their structures were confirmed by CID. This provides mass spectrometric evidence for the mechanism of the nitro to amine conversion process during nitroreduction, an important redox reaction involved in carcinogenesis. In addition, the well-known oxidation reaction of chlorpromazine was also examined. The putative transient one-electron transfer product, the chlorpromazine radical cation (m/z 318), was captured by MS, for the first time, and its structure was also verified by CID. In addition to these observations, some features of the DESI-interfaced electrochemical mass spectrometry were discussed, such as simple instrumentation and the lack of background signal. These results further demonstrate the feasibility of EC/DESI-MS for the study of the biology-relevant redox chemistry and would find applications in proteomics and drug development research.

  19. Longitudinal Bunch Shape Diagnostics With Coherent Radiation And a Transverse Deflecting Cavity at TTF2

    SciTech Connect

    Grimm, O.; Frohlich, L.; Klose, K.; Nagl, M.; Peters, O.; Rossbach, J.; Schlarb, H.; Emma, P.J.; McCormick, D.; Ross, M.; Smith, T.J.; /SLAC

    2005-08-04

    At the DESY TTF2 linear accelerator three special techniques to characterize the longitudinal charge distribution of the electron bunches that drive the free-electron laser are currently under study: electro-optical sampling, far-infrared spectral analysis of coherent radiation and the use of a transverse deflecting cavity to streak the bunch. The principles and implementations of the latter two are described in this paper. Details on electro-optical sampling can be found in [1].

  20. Distinctive Glycerophospholipid Profiles of Human Seminoma and Adjacent Normal Tissues by Desorption Electrospray Ionization Imaging Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Masterson, Timothy A.; Dill, Allison L.; Eberlin, Livia S.; Mattarozzi, Monica; Cheng, Liang; Beck, Stephen D. W.; Bianchi, Federica; Cooks, R. Graham

    2011-08-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) has been successfully used to discriminate between normal and cancerous human tissue from different anatomical sites. On the basis of this, DESI-MS imaging was used to characterize human seminoma and adjacent normal tissue. Seminoma and adjacent normal paired human tissue sections (40 tissues) from 15 patients undergoing radical orchiectomy were flash frozen in liquid nitrogen and sectioned to 15 μm thickness and thaw mounted to glass slides. The entire sample was two-dimensionally analyzed by the charged solvent spray to form a molecular image of the biological tissue. DESI-MS images were compared with formalin-fixed, hematoxylin and eosin (H&E) stained slides of the same material. Increased signal intensity was detected for two seminolipids [seminolipid (16:0/16:0) and seminolipid (30:0)] in the normal tubule testis tissue; these compounds were undetectable in seminoma tissue, as well as from the surrounding fat, muscle, and blood vessels. A glycerophosphoinositol [PI(18:0/20:4)] was also found at increased intensity in the normal testes tubule tissue when compared with seminoma tissue. Ascorbic acid (i.e., vitamin C) was found at increased amounts in seminoma tissue when compared with normal tissue. DESI-MS analysis was successfully used to visualize the location of several types of molecules across human seminoma and normal tissues. Discrimination between seminoma and adjacent normal testes tubules was achieved on the basis of the spatial distributions and varying intensities of particular lipid species as well as ascorbic acid. The increased presence of ascorbic acid within seminoma compared with normal seminiferous tubules was previously unknown.

  1. Operating experience with high beta superconducting rf cavities

    SciTech Connect

    Dylla, H.F.; Doolittle, L.R.; Benesch, J.F.

    1993-06-01

    The number of installed and operational {beta} = 1 superconducting rf cavities has grown significantly over the last two years in accelerator laboratories in Europe, Japan and the US. The total installed acceleration capability as of mid-1993 is approximately 1 GeV at nominal gradients. Major installations at CERN, DESY, KEK and CEBAF have provided large increments to the installed base and valuable operational experience. A selection of test data and operational experience gathered to date is reviewed.

  2. Current experiments in elementary particle physics. Revision

    SciTech Connect

    Galic, H.; Armstrong, F.E.; von Przewoski, B.

    1994-08-01

    This report contains summaries of 568 current and recent experiments in elementary particle physics. Experiments that finished taking data before 1988 are excluded. Included are experiments at BEPC (Beijing), BNL, CEBAF, CERN, CESR, DESY, FNAL, INS (Tokyo), ITEP (Moscow), IUCF (Bloomington), KEK, LAMPF, Novosibirsk, PNPI (St. Petersburg), PSI, Saclay, Serpukhov, SLAC, and TRIUMF, and also several underground and underwater experiments. Instructions are given for remote searching of the computer database (maintained under the SLAC/SPIRES system) that contains the summaries.

  3. The Discovery of the Gluon

    NASA Astrophysics Data System (ADS)

    Ellis, John

    2015-03-01

    Soon after the postulation of quarks, it was suggested that they interact via gluons, but direct experimental evidence was lacking for over a decade. In 1976, Mary Gaillard, Graham Ross and the author suggested searching for the gluon via 3-jet events due to gluon bremsstrahlung in e+e- collisions. Following our suggestion, the gluon was discovered at DESY in 1979 by TASSO and the other experiments at the PETRA collider.

  4. The discovery of the gluon

    NASA Astrophysics Data System (ADS)

    Ellis, John

    2014-12-01

    Soon after the postulation of quarks, it was suggested that they interact via gluons, but direct experimental evidence was lacking for over a decade. In 1976, Mary Gaillard, Graham Ross and the author suggested searching for the gluon via 3-jet events due to gluon bremsstrahlung in e+ e- collisions. Following our suggestion, the gluon was discovered at DESY in 1979 by TASSO and the other experiments at the PETRA collider.

  5. Nuclear Physics Laboratory, University of Colorado, Final Progress Report

    SciTech Connect

    Kinney, E.R., ed.

    2004-05-12

    OAK-B135 The results and progress of research funded by DOE grant number DOE-FG03-95ER40913 at the University of Colorado at Boulder is described. Includes work performed at the HERMES experiment at DESY to study the quark structure of the nucleon and the hadronization process in nuclei, as well as hadronic reactions studied at LAMPF, KEK, and Fermilab.

  6. Commissioning and early operating experience with the Fermilab horizontal test facility

    SciTech Connect

    Carcagno, R.; Chase, B.; Harms, E.; Hocker, A.; Prieto, P.; Reid, J.; Rowe, A.; Theilacker, J.; Votava, M.; /Fermilab

    2007-10-01

    Fermilab has constructed a facility for testing dressed superconducting radiofrequency (RF) cavities at 1.8 K with high-power pulsed RF. This test stand was designed to test both 9-cell 1.3 GHz TESLA-style cavities and 9-cell 3.9 GHz cavities being built by Fermilab for DESY's TTF-FLASH facility. An overview of the test stand and a description of its initial commissioning is described here.

  7. U.C. Davis high energy particle physics research: Technical progress report -- 1990

    SciTech Connect

    1990-12-31

    Summaries of progress made for this period is given for each of the following areas: (1) Task A--Experiment, H1 detector at DESY; (2) Task C--Experiment, AMY detector at KEK; (3) Task D--Experiment, fixed target detectors at Fermilab; (4) Task F--Experiment, PEP detector at SLAC and pixel detector; (5) Task B--Theory, particle physics; and (6) Task E--Theory, particle physics.

  8. Status report from CDF

    SciTech Connect

    Grassmann, H.

    1992-04-01

    This paper discusses some of the more recent results from CDF. It is based on a talk given at the Desy Theory workshop The Standard Model at high Temperature and Density.'' The paper emphasizes processes at parton q{sup 2} which are high from the point of view of experiment. Possible implications on current developments in the analysis on theory and vice versa are discussed.

  9. Status report from CDF

    SciTech Connect

    Grassmann, H.

    1992-04-01

    This paper discusses some of the more recent results from CDF. It is based on a talk given at the Desy Theory workshop ``The Standard Model at high Temperature and Density.`` The paper emphasizes processes at parton q{sup 2} which are high from the point of view of experiment. Possible implications on current developments in the analysis on theory and vice versa are discussed.

  10. Capture cavity II results at FNAL

    SciTech Connect

    Branlard, Julien; Chase, Brian; Cancelo, G.; Carcagno, R.; Edwards, H.; Fliller, R.; Hanna, B.; Harms, Elvan; Hocker, A.; Koeth, T.; Kucera, M.; /Fermilab

    2007-06-01

    As part of the research and development towards the International Linear Collider (ILC), several test facilities have been developed at Fermilab. This paper presents the latest Low Level RF (LLRF) results obtained with Capture Cavity II (CCII) at the ILC Test Accelerator (ILCTA) test facility. The main focus will be on controls and RF operations using the SIMCON based LLRF system developed in DESY [1]. Details about hardware upgrades and future work will be discussed.

  11. Resonance control in SRF cavities at FNAL

    SciTech Connect

    Schappert, W.; Pischalnikov, Y.; Scorrano, M.; /INFN, Pisa

    2011-03-01

    The Lorentz force can dynamically detune pulsed Superconducting RF cavities. Considerable additional RF power can be required to maintain the accelerating gradient if no effort is made to compensate for this detuning. Compensation systems using piezo actuators have been used successfully at DESY and elsewhere to control Lorentz Force Detuning (LFD). Recently, Fermilab has developed an adaptive compensation system for cavities in the Horizontal Test Stand, in the SRF Accelerator Test Facility, and for the proposed Project X.

  12. Rapid in situ detection of alkaloids in plant tissue under ambient conditions using desorption electrospray ionization.

    PubMed

    Talaty, Nari; Takáts, Zoltán; Cooks, R Graham

    2005-12-01

    Desorption electrospray ionization (DESI) mass spectrometry is applied to the in situ detection of alkaloids in the tissue of poison hemlock (Conium maculatum), jimsonweed (Datura stramonium) and deadly nightshade (Atropa belladonna). The experiment is carried out by electrospraying micro-droplets of solvent onto native or freshly-cut plant tissue surfaces. No sample preparation is required and the mass spectra are recorded under ambient conditions, in times of a few seconds. The impact of the sprayed droplets on the surface produces gaseous ions from organic compounds originally present in the plant tissue. The effects of operating parameters, including the electrospray high voltage, heated capillary temperature, the solvent infusion rate and the carrier gas pressure on analytical performance are evaluated and optimized. Different types of plant material are analyzed including seeds, stems, leaves, roots and flowers. All the previously reported alkaloids have been detected in C. maculatum, while fifteen out of nineteen known alkaloids for D. stramonium and the principal alkaloids of A. belladonna were also identified. All identifications were confirmed by tandem mass spectrometry. Results obtained show similar mass spectra, number of alkaloids, and signal intensities to those obtained when extraction and separation processes are performed prior to mass spectrometric analysis. Evidence is provided that DESI ionization occurs by both a gas-phase ionization process and by a droplet pick-up mechanism. Quantitative precision of DESI is compared with conventional electrospray ionization mass spectrometry (after sample workup) and the RSD values for the same set of 25 dicotyledonous C. maculatum seeds (one half of each seed analyzed by ESI and the other by DESI) are 9.8% and 5.2%, respectively.

  13. Recent HERMES results on transverse-momentum dependent phenomena from scattering off unpolarised targets

    NASA Astrophysics Data System (ADS)

    Karyan, Gevorg

    2015-01-01

    HERMES experiment at DESY in Hamburg collected a wealth of semi-inclusive deep-inelastic scattering data using the 27.6 GeV lepton beam and pure gaseous, unpolarised hydrogen and deuterium targets. These data can be used in studies of the transverse-momentum dependent effects and can provide a check of existing models for transverse-momentum dependent parton distribution and fragmentation functions.

  14. Evaluation of medical research performance--position paper of the Association of the Scientific Medical Societies in Germany (AWMF).

    PubMed

    Herrmann-Lingen, Christoph; Brunner, Edgar; Hildenbrand, Sibylle; Loew, Thomas H; Raupach, Tobias; Spies, Claudia; Treede, Rolf-Detlef; Vahl, Christian-Friedrich; Wenz, Hans-Jürgen

    2014-01-01

    Ziele: Die Evaluation medizinischer Forschungsleistung ist eine zentrale Voraussetzung für die gezielte Weiterentwicklung von Fakultäten, Forschungsschwerpunkten, Instituten bzw. Kliniken sowie Wissenschaftlerkarrieren. Sie basiert aber vielfach auf unklaren Zielvorstellungen und fragwürdigen Methoden und kann zu Fehlsteuerungen führen. Ziel der vorliegenden Arbeit ist eine Positionsbestimmung der wissenschaftlichen Medizin gegenüber den Zielen, Methoden und Konsequenzen ihrer Evaluation. Methoden: Im Rahmen des Berliner Forums der AWMF vom 18.10.2013 wurden von internationalen Experten Befunde zur Methodik der Evaluation medizinischer Forschungsleistung referiert, von Vertretern relevanter Wissenschaftsorganisationen diskutiert und in drei Adhoc-Schreibgruppen in einen Textentwurf gefasst. Dieser wurde mehrfach in der AWMF-Kommission für Leistungsevaluation in Forschung und Lehre sowie im AWMF-Präsidium diskutiert und in der vorliegenden finalen Fassung konsentiert.Ergebnisse: Die AWMF empfiehlt eine Veränderung des Systems der Bewertung medizinischer Forschungsleistungen. Evaluationen sollten eine a priori klar definierte und kommunizierte Zielsetzung besitzen und neben summativen auch formative Elemente enthalten. Neben sinnvollen aber nur in längeren Intervallen praktikablen informierten peer reviews können auch objektive Indikatoren zur Evaluation eingesetzt werden. Die Verwendung des Journal Impact Factors zur Bewertung einzelner Publikationen oder ihrer Autoren wird dabei abgelehnt. Der wissenschaftliche „Impact“ erfordert vielmehr eine multidimensionale Beurteilung, in der z.B. normierte Zitationsraten wissenschaftlicher Publikationen ebenso Berücksichtigung finden wie andere Formen der Rezeption in Fachwelt und Öffentlichkeit sowie Tätigkeiten im Bereich der Wissenschaftsorganisation, -synthese und -kommunikation. Daneben werden Vorschläge zu einer differenzierten Bewertung von Drittmitteleinwerbung und Nachwuchsförderung gemacht

  15. Zu einer inhaltsorientierten Theorie des Lernens und Lehrens der biologischen Evolution

    NASA Astrophysics Data System (ADS)

    Wallin, Anita

    Der Zweck dieser Studie (zwecks Überblick siehe dazu Abb. 9.1) war zu untersuchen, wie die Schüler der Sekundarstufe II ein Verständnis von der Theorie der biologischen Evolution entwickeln. Vom Ausgangspunkt "Vorurteile der Schüler“ ausgehend wurden Unterrichtssequenzen entwickelt und drei verschiedene Lernexperimente in einem zyklischen Prozess durchgeführt. Das Wissen der Schüler wurde vor, während und nach den Unterrichtssequenzen mit Hilfe von schriftlichen Tests, Interviews und Diskussionsrunden in kleinen Gruppen abgefragt. Etwa 80 % der Schüler hatten vor dem Unterricht alternative Vorstellungen von Evolution, und in dem Nachfolgetest erreichten circa 75 % ein wissenschaftliches Niveau. Die Argumentation der Schüler in den verschiedenen Tests wurde sorgfältig unter Rücksichtnahme auf Vorurteile, der konzeptionellen Struktur der Theorie der Evolution und den Zielen des Unterrichts analysiert. Daraus konnten Einsichten in solche Anforderungen an Lehren und Lernen gewonnen werden, die Herausforderungen an Schüler und Lehrer darstellen, wenn sie anfangen, evolutionäre Biologie zu lernen oder zu lehren. Ein wichtiges Ergebnis war, dass das Verständnis existierender Variation in einer Population der Schlüssel zum Verständnis von natürlicher Selektion ist. Die Ergebnisse sind in einer inhaltsorientierten Theorie zusammengefasst, welche aus drei verschiedenen Aspekten besteht: 1) den inhaltsspezifischen Aspekten, die einzigartig für jedes wissenschaftliche Feld sind; 2) den Aspekten, die die Natur der Wissenschaft betreffen; und 3) den allgemeinen Aspekten. Diese Theorie kann in neuen Experimenten getestet und weiter entwickelt werden.

  16. Ranking, selecting, and prioritising genes with desirability functions.

    PubMed

    Lazic, Stanley E

    2015-01-01

    In functional genomics experiments, researchers often select genes to follow-up or validate from a long list of differentially expressed genes. Typically, sharp thresholds are used to bin genes into groups such as significant/non-significant or fold change above/below a cut-off value, and ad hoc criteria are also used such as favouring well-known genes. Binning, however, is inefficient and does not take the uncertainty of the measurements into account. Furthermore, p-values, fold-changes, and other outcomes are treated as equally important, and relevant genes may be overlooked with such an approach. Desirability functions are proposed as a way to integrate multiple selection criteria for ranking, selecting, and prioritising genes. These functions map any variable to a continuous 0-1 scale, where one is maximally desirable and zero is unacceptable. Multiple selection criteria are then combined to provide an overall desirability that is used to rank genes. In addition to p-values and fold-changes, further experimental results and information contained in databases can be easily included as criteria. The approach is demonstrated with a breast cancer microarray data set. The functions and an example data set can be found in the desiR package on CRAN (https://cran.r-project.org/web/packages/desiR/) and the development version is available on GitHub (https://github.com/stanlazic/desiR). PMID:26644980

  17. Spatially-Resolved Analysis of Glycolipids and Metabolites in Living Synechococcus sp. PCC7002 Using Nanospray Desorption Electrospray Ionization

    SciTech Connect

    Lanekoff, Ingela T.; Geydebrekht, Oleg V.; Pinchuk, Grigoriy E.; Konopka, Allan; Laskin, Julia

    2013-04-07

    Microorganisms release a diversity of organic compounds that couple interspecies metabolism, enable communication, or provide benefits to other microbes. Increased knowledge of microbial metabolite production will contribute to understanding of the dynamic microbial world and can potentially lead to new developments in drug discovery, biofuel production, and clinical research. Nanospray desorption electrospray ionization (nano-DESI) is an ambient ionization technique that enables detailed chemical characterization of molecules from a specific location on a surface without special sample pretreatment. Due to its ambient nature, living bacterial colonies growing on agar plates can be rapidly and non-destructively analyzed. We performed spatially resolved nano-DESI analysis of living Synechococcus sp. PCC 7002 colonies on agar plates. We use high resolution mass spectrometry and MS/MS analysis of the living Synechococcus sp. PCC 7002 colonies to detect metabolites and lipids, and confirm their identities. We found that despite the high salt content of the agar (osmolarity ca. 700 mM), nano-DESI analysis enables detailed characterization of metabolites produced by the colony. Using this technique, we identified several glycolipids found on the living colonies and examined the effect of the age of the colony on the chemical gradient of glucosylglycerol secreted onto agar.

  18. News in Electron Cooling: Highlights from ECOOL'99

    SciTech Connect

    Reistad, D.

    2000-12-31

    A Workshop on Electron Cooling and Related Topics was organized in Uppsala, Sweden, from 19 to 22 May 1999. The workshop, which incorporated the 5th Workshop on Medium Energy Electron Cooling, included papers on theory, technology, limitations and applications of electron cooling as well as papers on laser cooling and stochastic pre-cooling. The last day of the workshop was devoted to so-called Medium (2<{gamma}<20, i.e. FNAL Recycler and DESY PETRA) and High (i.e. DESY HERA) Energy Electron Cooling. Reports on measurements and achievements made at a number of electron cooling facilities, including the most recently completed ones, i.e. at SIS (GSI, Darmstadt) and at AD (CERN), were given. There were also reports on electron coolers under construction at the National Institute of Radiological Science (NIRS) at Chiba in Japan and at the Heavy Ion Research Facility (HIRFL) in Lanzhou, China. Work on medium- and high-energy electron cooling at FNAL, DESY, and JINR was presented.

  19. Handsfree Surface Analysis

    2006-11-01

    The HANDSFREE SURFACE ANALYSIS software code enables unattended analysis of surfaces by desorption electrospray (DESI) and liquid-junction surface sampling probe (SSP) mass spectrometry. The software allows automated lane scanning, imaging (e.g. lane rastering), spot and array sampling, and array scanning methods by controlling the movement of the sample attached to a computer-controlled stage. The software is able to collect, visualize and analyze mass spectrometry data real-time for surface analysis purposes by interacting with mass spectrometrymore » instrumentation software. The software also enables data post processing for imaging and other analytical purposes. The software also contains image analysis approaches to control the sampling capillary-to-surface distance when used with DESI, and for automated formation and real-time reoptimization of the sampling probe-to-surface liquid microjunction when used with SSP. Control of these distances is essential to automated, hands-free operation of a DESI or SSP mass spectrometry system.« less

  20. Desorption electrospray ionization-high resolution mass spectrometry for the screening of veterinary drugs in cross-contaminated feedstuffs.

    PubMed

    Seró, Raquel; Núñez, Oscar; Bosch, Jaume; Grases, José M; Rodríguez, Pilar; Moyano, Encarnacion; Galceran, Martia Teresa

    2015-09-01

    In this study, a desorption electrospray ionization-high resolution mass spectrometry (DESI-HRMS) screening method was developed for fast identification of veterinary drugs in cross-contaminated feedstuffs. The reliable detection was performed working at high resolution (70,000 full width half maximum, FWHM) using an orbitrap mass analyzer. Among the optimized DESI parameters, the solvent (acetonitrile/water, 80:20, v/v) and the sample substrate (poly-tetrafluoroethylene, PTFE) were critical to obtain the best sensitivity. To analyze the solid feed samples, different approaches were tested and a simple solid-liquid extraction and the direct analysis of an aliquot (2 μL) of the extract after letting it dry on the PTFE printed spot provided the best results. The identification of the veterinary drugs (target and non-target) in the cross-contaminated feedstuffs based on the accurate mass measurement and the isotopic pattern fit was performed automatically using a custom-made database. The positive cross-contaminated feed samples were quantified by ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS). The results obtained demonstrate that DESI-HRMS can be proposed as a fast and suitable screening method to identify positive cross-contaminated feedstuffs reducing the number of samples to be subsequently quantified by UHPLC-MS/MS, thus improving the productivity in quality control laboratories. PMID:26168975

  1. Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea.

    PubMed

    Kujur, Alice; Upadhyaya, Hari D; Bajaj, Deepak; Gowda, C L L; Sharma, Shivali; Tyagi, Akhilesh K; Parida, Swarup K

    2016-06-20

    In the present study, molecular mapping of high-resolution plant height QTLs was performed by integrating 3625 desi genome-derived GBS (genotyping-by-sequencing)-SNPs on an ultra-high resolution intra-specific chickpea genetic linkage map (dwarf/semi-dwarf desi cv. ICC12299 x tall kabuli cv. ICC8261). The identified six major genomic regions harboring six robust QTLs (11.5-21.3 PVE), associated with plant height, were mapped within <0.5 cM average marker intervals on six chromosomes. Five SNPs-containing genes tightly linked to the five plant height QTLs, were validated based upon their high potential for target trait association (12.9-20.8 PVE) in 65 desi and kabuli chickpea accessions. The vegetative tissue-specific expression, including higher differential up-regulation (>5-fold) of five genes especially in shoot, young leaf, shoot apical meristem of tall mapping parental accession (ICC8261) as compared to that of dwarf/semi-dwarf parent (ICC12299) was apparent. Overall, combining high-resolution QTL mapping with genetic association analysis and differential expression profiling, delineated natural allelic variants in five candidate genes (encoding cytochrome-c-biosynthesis protein, malic oxidoreductase, NADH dehydrogenase iron-sulfur protein, expressed protein and bZIP transcription factor) regulating plant height in chickpea. These molecular tags have potential to dissect complex plant height trait and accelerate marker-assisted genetic enhancement for developing cultivars with desirable plant height ideotypes in chickpea.

  2. Proposed continuous wave energy recovery operation of an XFEL

    SciTech Connect

    J. Sekutowicz; S. A. Bogacz; D. Douglas; P. Kneisel; G. P. Williams; M. Ferrario; L. Serafini; I. Ben-Zvi; J. Rose; J. Smedley; T. Srinivasan-Rao; W.-D. Moeller; B. Petersen; D. Proch; S. Simrock; P. Colestock; J. B. Rosenzweig

    2004-05-01

    Commissioning of two large coherent light facilities at SLAC and DESY should begin in 2008 and in 2011 respectively. In this paper we look further into the future, hoping to answer, in a very preliminary way, two questions. First: ''What will the next generation of XFEL facilities look like?'' Believing that superconducting technology offers advantages such as high quality beams with highly populated bunches, the possibility of energy recovery and higher overall efficiency than warm technology, we focus this preliminary study on the superconducting option. From this belief the second question arises: ''What modifications in superconducting technology and in the machine design are needed, as compared to the present DESY XFEL, and what kind of R&D program should be proposed to arrive in the next few years at a technically feasible solution with even higher brilliance and increased overall conversion of AC power to photon beam power?'' In this paper we will very often refer to and profit from the DESY XFEL design, acknowledging its many technically innovative solutions.

  3. Imaging of Proteins in Tissue Samples Using Nanospray Desorption Electrospray Ionization Mass Spectrometry.

    PubMed

    Hsu, Cheng-Chih; Chou, Pi-Tai; Zare, Richard N

    2015-11-17

    Chemical maps of tissue samples provide important information on biological processes therein. Recently, advances in tissue imaging have been achieved using ambient ionization techniques, such as desorption electrospray ionization mass spectrometry (DESI-MS), but such techniques have been almost exclusively confined to the mapping of lipids and metabolites. We report here the use of nanospray desorption electrospray ionization (nanoDESI) that allows us to image proteins in tissue samples in a label-free manner at atmospheric pressure with only minimum sample preparation. Multiply charged proteins with masses up to 15 kDa were successfully detected by nanoDESI using an LTQ Orbitrap mass spectrometer. In an adult mice brain section, expression of proteins including ubiquitin, β-thymosin, myelin basic protein, and hemoglobin were spatially mapped and characterized. We also determined the location of methylation on myelin basic protein. This imaging modality was further implemented to MYC-induced lymphomas. We observed an array of truncated proteins in the region where normal thymus cells were infiltrated by tumor cells, in contrast to healthy tissue.

  4. Ranking, selecting, and prioritising genes with desirability functions.

    PubMed

    Lazic, Stanley E

    2015-01-01

    In functional genomics experiments, researchers often select genes to follow-up or validate from a long list of differentially expressed genes. Typically, sharp thresholds are used to bin genes into groups such as significant/non-significant or fold change above/below a cut-off value, and ad hoc criteria are also used such as favouring well-known genes. Binning, however, is inefficient and does not take the uncertainty of the measurements into account. Furthermore, p-values, fold-changes, and other outcomes are treated as equally important, and relevant genes may be overlooked with such an approach. Desirability functions are proposed as a way to integrate multiple selection criteria for ranking, selecting, and prioritising genes. These functions map any variable to a continuous 0-1 scale, where one is maximally desirable and zero is unacceptable. Multiple selection criteria are then combined to provide an overall desirability that is used to rank genes. In addition to p-values and fold-changes, further experimental results and information contained in databases can be easily included as criteria. The approach is demonstrated with a breast cancer microarray data set. The functions and an example data set can be found in the desiR package on CRAN (https://cran.r-project.org/web/packages/desiR/) and the development version is available on GitHub (https://github.com/stanlazic/desiR).

  5. Anti-theft device staining on banknotes detected by mass spectrometry imaging.

    PubMed

    Correa, Deleon Nascimento; Zacca, Jorge Jardim; Rocha, Werickson Fortunato de Carvalho; Borges, Rodrigo; de Souza, Wanderley; Augusti, Rodinei; Eberlin, Marcos Nogueira; Vendramini, Pedro Henrique

    2016-03-01

    We describe the identification and limits of detection of ink staining by mass spectrometry imaging (MSI), as used in anti-theft devices (ATDs). Such ink staining is applied to banknotes during automated teller machine (ATM) explosions. Desorption electrospray ionization (DESI) coupled with high-resolution and high-accuracy orbitrap mass spectrometry (MS) and a moving stage device were applied to obtain 2D molecular images of the major dyes used for staining, that is, 1-methylaminoanthraquinone (MAAQ), rhodamine B (RB) and rhodamine 6G (R6G). MAAQ could not be detected because of its inefficient desorption by DESI from the banknote cellulose surface. By contrast, ATD staining on banknotes is perceptible by the human naked eye only at concentrations higher than 0.2 μg cm(-2), whereas both RB and R6G at concentrations 200 times lower (as low as 0.001 μg cm(-2)) could be easily detected and imaged by DESI-MSI, with selective and specific identification of each analyte and their spatial distribution on samples from suspects. This technique is non-destructive, and no sample preparation is required, which ensures sample preservation for further forensic investigations. PMID:26784008

  6. Analysis of sexual assault evidence: statistical classification of condoms by ambient mass spectrometry.

    PubMed

    Mirabelli, Mario F; Ifa, Demian R; Sindona, Giovanni; Tagarelli, Antonio

    2015-05-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) and easy ambient sonic-spray ionization mass spectrometry (EASI-MS) are employed here in the forensic analysis of chemical compounds found in condoms and relative traces, and their analytical performances are compared. Statistical analysis of data obtained from mass spectra only was applied in order to obtain classification rules for distinguishing ten types of condoms. In particular, two supervised chemometric techniques [linear discriminant analysis (LDA) and soft independent modeling of class analogy (SIMCA)] were carried out on absolute and relative intensity values to test the performances of statistical models in terms of predictive capacity. The achieved classification of samples was excellent because of the high prediction percentages of the method used both for DESI and EASI mass spectrometry analyses, confirming these two as potential ambient ionization techniques for forensic analyses in case of sexual assault crimes. EASI-MS showed 99% prediction ability for LDA using relative data and 100% prediction ability for SIMCA using both absolute and relative ones, while DESI showed 94% prediction ability for both LDA and SIMCA. The absence of any sample preparation technique gives advantages in terms of sample preservation and reduced contamination, allowing successive analyses to be performed on the same sample by other techniques.

  7. Quantitative mass spectrometry imaging of small-molecule neurotransmitters in rat brain tissue sections using nanospray desorption electrospray ionization.

    PubMed

    Bergman, Hilde-Marléne; Lundin, Erik; Andersson, Malin; Lanekoff, Ingela

    2016-06-01

    Small molecule neurotransmitters are essential for the function of the nervous system, and neurotransmitter imbalances are often connected to neurological disorders. The ability to quantify such imbalances is important to provide insights into the biochemical mechanisms underlying the disorder. This proof-of-principle study presents online quantification of small molecule neurotransmitters, specifically acetylcholine, γ-aminobutyric acid (GABA) and glutamate, in rat brain tissue sections using nanospray desorption electrospray ionization (nano-DESI) mass spectrometry imaging. By incorporating deuterated internal standards in the nano-DESI solvent we show identification, accurate mapping, and quantification of these small neurotransmitters in rat brain tissue without introducing any additional sample preparation steps. We find that GABA is about twice as abundant in the medial septum-diagonal band complex (MSDB) as in the cortex, while glutamate is about twice as abundant in the cortex as compared to the MSDB. The study shows that nano-DESI is well suited for imaging of small molecule neurotransmitters in health and disease. PMID:26859000

  8. Continuous wave energy recovery operation of an XFEL

    SciTech Connect

    Jacek Sekutowicz; S. A. Bogacz; D. Douglas; Peter Kneisel; G. P. Williams; M. Ferrario; L. Serafini; I. Ben-Zvi; J. Rose; T. Srinivasan-Rao; W.-D. Mueller; B. Petersen; D. Proch; S.Simrock; P. Colestock; J. B. Rosenzweig

    2003-12-01

    Commissioning of two large coherent light facilities at SLAC and DESY should begin in 2008 and in 2011 respectively. In this paper we look further into the future, hoping to answer, in a very preliminary way, two questions. First: ''What will the next generation of XFEL facilities look like?'' Believing that superconducting technology offers advantages such as high quality beams with highly populated bunches, the possibility of energy recovery and higher overall efficiency than warm technology, we focus this preliminary study on the superconducting option. From this belief the second question arises: ''What modifications in superconducting technology and in the machine design are needed, as compared to the present DESY XFEL, and what kind of R&D program should be proposed to arrive in the next few years at a technically feasible solution with even higher brilliance and increased overall conversion of AC power to photon beam power?'' In this paper we will very often refer to and profit from the DESY XFEL design, acknowledging its many technically innovative solutions.

  9. CW Energy Recovery Operation of XFELs

    SciTech Connect

    Jacek Sekutowicz; S. Bogacz; Dave Douglas; Peter Kneisel; Gwyn P. Wiliams; Massimo Ferrario; Luca Serafini; Ilan Ben-Zvi; James Rose; Triveni Srinivasan-Rao; Patrick Colestock; Wolf-Dietrich Moeller; Bernd Petersen; Dieter Proch; S. Simrock; James B. Rosenzweig

    2003-09-01

    Commissioning of two large coherent light facilities at SLAC and DESY should begin in 2008 and in 2011 respectively. In this paper we look further into the future, hoping to answer, in a very preliminary way, two questions. First: What will the next generation of the XFEL facilities look like ? Believing that super-conducting technology offers several advantages over room-temperature technology, such as high quality beams with highly populated bunches and the possibility of energy recovery or higher overall efficiency, we focus this preliminary study on the superconducting option. From this belief the second question arises: ''What modifications in superconducting technology and in machine design are needed, as compared to the present DESY XFEL, and what kind of R&D program is required over the next few years to arrive at a technically feasible solution with even higher brilliance and increased overall conversion of AC power to photon beam power. In this paper we will very often refer to and profit from the DESY XFEL design, acknowledging its many technically innovative solutions.

  10. Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.

    PubMed

    Kujur, Alice; Upadhyaya, Hari D; Shree, Tanima; Bajaj, Deepak; Das, Shouvik; Saxena, Maneesha S; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C L L; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K; Parida, Swarup K

    2015-05-05

    We discovered 26785 and 16573 high-quality SNPs differentiating two parental genotypes of a RIL mapping population using reference desi and kabuli genome-based GBS assay. Of these, 3625 and 2177 SNPs have been integrated into eight desi and kabuli chromosomes, respectively in order to construct ultra-high density (0.20-0.37 cM) intra-specific chickpea genetic linkage maps. One of these constructed high-resolution genetic map has potential to identify 33 major genomic regions harbouring 35 robust QTLs (PVE: 17.9-39.7%) associated with three agronomic traits, which were mapped within <1 cM mean marker intervals on desi chromosomes. The extended LD (linkage disequilibrium) decay (~15 cM) in chromosomes of genetic maps have encouraged us to use a rapid integrated approach (comparative QTL mapping, QTL-region specific haplotype/LD-based trait association analysis, expression profiling and gene haplotype-based association mapping) rather than a traditional QTL map-based cloning method to narrow-down one major seed weight (SW) robust QTL region. It delineated favourable natural allelic variants and superior haplotype-containing one seed-specific candidate embryo defective gene regulating SW in chickpea. The ultra-high-resolution genetic maps, QTLs/genes and alleles/haplotypes-related genomic information generated and integrated strategy for rapid QTL/gene identification developed have potential to expedite genomics-assisted breeding applications in crop plants, including chickpea for their genetic enhancement.

  11. Imaging Nicotine in Rat Brain Tissue by Use of Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Lanekoff, Ingela T.; Thomas, Mathew; Carson, James P.; Smith, Jordan N.; Timchalk, Charles; Laskin, Julia

    2013-01-15

    Imaging mass spectrometry offers simultaneous detection of drugs, drug metabolites and endogenous substances in a single experiment. This is important when evaluating effects of a drug on a complex organ system such as the brain, where there is a need to understand how regional drug distribution impacts function. Nicotine is an addictive drug and its action in the brain is of high interest. Here we use nanospray desorption electrospray ionization, nano-DESI, imaging to discover the localization of nicotine in rat brain tissue after in vivo administration of nicotine. Nano-DESI is a new ambient technique that enables spatially-resolved analysis of tissue samples without special sample pretreatment. We demonstrate high sensitivity of nano-DESI imaging that enables detection of only 0.7 fmole nicotine per pixel in the complex brain matrix. Furthermore, by adding deuterated nicotine to the solvent, we examined how matrix effects, ion suppression, and normalization affect the observed nicotine distribution. Finally, we provide preliminary results suggesting that nicotine localizes to the hippocampal substructure called dentate gyrus.

  12. Matrix Effects in Biological Mass Spectrometry Imaging: Identification and Compensation

    SciTech Connect

    Lanekoff, Ingela T.; Stevens, Susan; Stenzel-Poore, Mary; Laskin, Julia

    2014-07-21

    Matrix effects in mass spectrometry imaging (MSI) may affect the observed molecular distribution in chemical and biological systems. In this study, we introduce an experimental approach that efficiently compensates for matrix effects in nanospray desorption electrospray ionization (nano-DESI) MSI without introducing any complexity into the experimental protocol. We demonstrate compensation for matrix effects in nano-DESI MSI of phosphatidylcholine (PC) in normal and ischemic mouse brain tissue by doping the nano-DESI solvent with PC standards. Specifically, we use mouse brain tissue of a middle cerebral artery occlusion (MCAO) stroke model with an ischemic region localized to one hemisphere of the brain. Due to similar suppression in ionization of endogenous PC molecules extracted from the tissue and PC standards added to the solvent, matrix effects are eliminated by normalizing the intensity of the sodium and potassium adducts of endogenous PC to the intensity of the corresponding adduct of the PC standard. This approach efficiently compensates for signal variations resulting from differences in the local concentrations of sodium and potassium in tissue sections and from the complexity of the extracted analyte mixture derived from local variations in molecular composition.

  13. Desorption electrospray ionization mass spectrometry reveals surface-mediated antifungal chemical defense of a tropical seaweed

    PubMed Central

    Lane, Amy L.; Nyadong, Leonard; Galhena, Asiri S.; Shearer, Tonya L.; Stout, E. Paige; Parry, R. Mitchell; Kwasnik, Mark; Wang, May D.; Hay, Mark E.; Fernandez, Facundo M.; Kubanek, Julia

    2009-01-01

    Organism surfaces represent signaling sites for attraction of allies and defense against enemies. However, our understanding of these signals has been impeded by methodological limitations that have precluded direct fine-scale evaluation of compounds on native surfaces. Here, we asked whether natural products from the red macroalga Callophycus serratus act in surface-mediated defense against pathogenic microbes. Bromophycolides and callophycoic acids from algal extracts inhibited growth of Lindra thalassiae, a marine fungal pathogen, and represent the largest group of algal antifungal chemical defenses reported to date. Desorption electrospray ionization mass spectrometry (DESI-MS) imaging revealed that surface-associated bromophycolides were found exclusively in association with distinct surface patches at concentrations sufficient for fungal inhibition; DESI-MS also indicated the presence of bromophycolides within internal algal tissue. This is among the first examples of natural product imaging on biological surfaces, suggesting the importance of secondary metabolites in localized ecological interactions, and illustrating the potential of DESI-MS in understanding chemically-mediated biological processes. PMID:19366672

  14. High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea

    PubMed Central

    Gaur, Rashmi; Jeena, Ganga; Shah, Niraj; Gupta, Shefali; Pradhan, Seema; Tyagi, Akhilesh K; Jain, Mukesh; Chattopadhyay, Debasis; Bhatia, Sabhyata

    2015-01-01

    This study presents genome-wide discovery of SNPs through next generation sequencing of the genome of Cicer reticulatum. Mapping of the C. reticulatum sequenced reads onto the draft genome assembly of C. arietinum (desi chickpea) resulted in identification of 842,104 genomic SNPs which were utilized along with an additional 36,446 genic SNPs identified from transcriptome sequences of the aforementioned varieties. Two new chickpea Oligo Pool All (OPAs) each having 3,072 SNPs were designed and utilized for SNP genotyping of 129 Recombinant Inbred Lines (RILs). Using Illumina GoldenGate Technology genotyping data of 5,041 SNPs were generated and combined with the 1,673 marker data from previously published studies, to generate a high resolution linkage map. The map comprised of 6698 markers distributed on eight linkage groups spanning 1083.93 cM with an average inter-marker distance of 0.16 cM. Utility of the present map was demonstrated for improving the anchoring of the earlier reported draft genome sequence of desi chickpea by ~30% and that of kabuli chickpea by 18%. The genetic map reported in this study represents the most dense linkage map of chickpea , with the potential to facilitate efficient anchoring of the draft genome sequences of desi as well as kabuli chickpea varieties. PMID:26303721

  15. Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea.

    PubMed

    Kujur, Alice; Upadhyaya, Hari D; Bajaj, Deepak; Gowda, C L L; Sharma, Shivali; Tyagi, Akhilesh K; Parida, Swarup K

    2016-01-01

    In the present study, molecular mapping of high-resolution plant height QTLs was performed by integrating 3625 desi genome-derived GBS (genotyping-by-sequencing)-SNPs on an ultra-high resolution intra-specific chickpea genetic linkage map (dwarf/semi-dwarf desi cv. ICC12299 x tall kabuli cv. ICC8261). The identified six major genomic regions harboring six robust QTLs (11.5-21.3 PVE), associated with plant height, were mapped within <0.5 cM average marker intervals on six chromosomes. Five SNPs-containing genes tightly linked to the five plant height QTLs, were validated based upon their high potential for target trait association (12.9-20.8 PVE) in 65 desi and kabuli chickpea accessions. The vegetative tissue-specific expression, including higher differential up-regulation (>5-fold) of five genes especially in shoot, young leaf, shoot apical meristem of tall mapping parental accession (ICC8261) as compared to that of dwarf/semi-dwarf parent (ICC12299) was apparent. Overall, combining high-resolution QTL mapping with genetic association analysis and differential expression profiling, delineated natural allelic variants in five candidate genes (encoding cytochrome-c-biosynthesis protein, malic oxidoreductase, NADH dehydrogenase iron-sulfur protein, expressed protein and bZIP transcription factor) regulating plant height in chickpea. These molecular tags have potential to dissect complex plant height trait and accelerate marker-assisted genetic enhancement for developing cultivars with desirable plant height ideotypes in chickpea. PMID:27319304

  16. Desorption electrospray ionization-high resolution mass spectrometry for the screening of veterinary drugs in cross-contaminated feedstuffs.

    PubMed

    Seró, Raquel; Núñez, Oscar; Bosch, Jaume; Grases, José M; Rodríguez, Pilar; Moyano, Encarnacion; Galceran, Martia Teresa

    2015-09-01

    In this study, a desorption electrospray ionization-high resolution mass spectrometry (DESI-HRMS) screening method was developed for fast identification of veterinary drugs in cross-contaminated feedstuffs. The reliable detection was performed working at high resolution (70,000 full width half maximum, FWHM) using an orbitrap mass analyzer. Among the optimized DESI parameters, the solvent (acetonitrile/water, 80:20, v/v) and the sample substrate (poly-tetrafluoroethylene, PTFE) were critical to obtain the best sensitivity. To analyze the solid feed samples, different approaches were tested and a simple solid-liquid extraction and the direct analysis of an aliquot (2 μL) of the extract after letting it dry on the PTFE printed spot provided the best results. The identification of the veterinary drugs (target and non-target) in the cross-contaminated feedstuffs based on the accurate mass measurement and the isotopic pattern fit was performed automatically using a custom-made database. The positive cross-contaminated feed samples were quantified by ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS). The results obtained demonstrate that DESI-HRMS can be proposed as a fast and suitable screening method to identify positive cross-contaminated feedstuffs reducing the number of samples to be subsequently quantified by UHPLC-MS/MS, thus improving the productivity in quality control laboratories.

  17. Rapid and Selective Screening for Sulfhydryl Analytes in Plasma and Urine using Surface-Enhanced Transmission Mode Desorption Electrospray Ionization Mass Spectrometry

    PubMed Central

    Chipuk, Joseph E.; Gelb, Michael H.; Brodbelt, Jennifer S.

    2010-01-01

    Nylon mesh substrates were derivatized to include VICATSH, a biotinylated reagent that contains both a photolabile linking group and a thiol specific capture agent. The enhanced mesh substrates were then used to capture sulfhydryl analytes directly from urine and plasma samples via covalent reaction between the reactive thiols of the analytes and the iodoacetaminyl unit of VICATSH. Photocleavage of the labile linker was followed by direct analysis of the mesh surface via transmission mode desorption electrospray ionization (TM-DESI). This chemoselective capture method promoted enrichment of sulfhydryl analytes and reduced matrix interferences, thereby resulting in increased analytical performance of surface enhanced TM-DESI-MS when compared to standard DESI-MS. The present work describes the manufacture of the derivatized mesh substrates and the quality control assessments made during the manufacturing process; the optimization of the chemoselective capture method; and results of experiments pertinent to biological applications. Integration of the chemoselective capture materials with ambient ionization and tandem mass spectrometry results in a powerful combination of speed and selectivity for targeted analyte screening. PMID:20402469

  18. High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea.

    PubMed

    Gaur, Rashmi; Jeena, Ganga; Shah, Niraj; Gupta, Shefali; Pradhan, Seema; Tyagi, Akhilesh K; Jain, Mukesh; Chattopadhyay, Debasis; Bhatia, Sabhyata

    2015-01-01

    This study presents genome-wide discovery of SNPs through next generation sequencing of the genome of Cicer reticulatum. Mapping of the C. reticulatum sequenced reads onto the draft genome assembly of C. arietinum (desi chickpea) resulted in identification of 842,104 genomic SNPs which were utilized along with an additional 36,446 genic SNPs identified from transcriptome sequences of the aforementioned varieties. Two new chickpea Oligo Pool All (OPAs) each having 3,072 SNPs were designed and utilized for SNP genotyping of 129 Recombinant Inbred Lines (RILs). Using Illumina GoldenGate Technology genotyping data of 5,041 SNPs were generated and combined with the 1,673 marker data from previously published studies, to generate a high resolution linkage map. The map comprised of 6698 markers distributed on eight linkage groups spanning 1083.93 cM with an average inter-marker distance of 0.16 cM. Utility of the present map was demonstrated for improving the anchoring of the earlier reported draft genome sequence of desi chickpea by ~30% and that of kabuli chickpea by 18%. The genetic map reported in this study represents the most dense linkage map of chickpea , with the potential to facilitate efficient anchoring of the draft genome sequences of desi as well as kabuli chickpea varieties.

  19. Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea

    PubMed Central

    Upadhyaya, Hari D.; Bajaj, Deepak; Narnoliya, Laxmi; Das, Shouvik; Kumar, Vinod; Gowda, C. L. L.; Sharma, Shivali; Tyagi, Akhilesh K.; Parida, Swarup K.

    2016-01-01

    Identification of potential genes/alleles governing complex seed-protein content (SPC) is essential in marker-assisted breeding for quality trait improvement of chickpea. Henceforth, the present study utilized an integrated genomics-assisted breeding strategy encompassing trait association analysis, selective genotyping in traditional bi-parental mapping population and differential expression profiling for the first-time to understand the complex genetic architecture of quantitative SPC trait in chickpea. For GWAS (genome-wide association study), high-throughput genotyping information of 16376 genome-based SNPs (single nucleotide polymorphism) discovered from a structured population of 336 sequenced desi and kabuli accessions [with 150–200 kb LD (linkage disequilibrium) decay] was utilized. This led to identification of seven most effective genomic loci (genes) associated [10–20% with 41% combined PVE (phenotypic variation explained)] with SPC trait in chickpea. Regardless of the diverse desi and kabuli genetic backgrounds, a comparable level of association potential of the identified seven genomic loci with SPC trait was observed. Five SPC-associated genes were validated successfully in parental accessions and homozygous individuals of an intra-specific desi RIL (recombinant inbred line) mapping population (ICC 12299 × ICC 4958) by selective genotyping. The seed-specific expression, including differential up-regulation (>four fold) of six SPC-associated genes particularly in accessions, parents and homozygous individuals of the aforementioned mapping population with a high level of contrasting SPC (21–22%) was evident. Collectively, the integrated genomic approach delineated diverse naturally occurring novel functional SNP allelic variants in six potential candidate genes regulating SPC trait in chickpea. Of these, a non-synonymous SNP allele-carrying zinc finger transcription factor gene exhibiting strong association with SPC trait was found to be the most

  20. Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea

    PubMed Central

    Kujur, Alice; Upadhyaya, Hari D.; Bajaj, Deepak; Gowda, C. L. L.; Sharma, Shivali; Tyagi, Akhilesh K.; Parida, Swarup K.

    2016-01-01

    In the present study, molecular mapping of high-resolution plant height QTLs was performed by integrating 3625 desi genome-derived GBS (genotyping-by-sequencing)-SNPs on an ultra-high resolution intra-specific chickpea genetic linkage map (dwarf/semi-dwarf desi cv. ICC12299 x tall kabuli cv. ICC8261). The identified six major genomic regions harboring six robust QTLs (11.5–21.3 PVE), associated with plant height, were mapped within <0.5 cM average marker intervals on six chromosomes. Five SNPs-containing genes tightly linked to the five plant height QTLs, were validated based upon their high potential for target trait association (12.9–20.8 PVE) in 65 desi and kabuli chickpea accessions. The vegetative tissue-specific expression, including higher differential up-regulation (>5-fold) of five genes especially in shoot, young leaf, shoot apical meristem of tall mapping parental accession (ICC8261) as compared to that of dwarf/semi-dwarf parent (ICC12299) was apparent. Overall, combining high-resolution QTL mapping with genetic association analysis and differential expression profiling, delineated natural allelic variants in five candidate genes (encoding cytochrome-c-biosynthesis protein, malic oxidoreductase, NADH dehydrogenase iron-sulfur protein, expressed protein and bZIP transcription factor) regulating plant height in chickpea. These molecular tags have potential to dissect complex plant height trait and accelerate marker-assisted genetic enhancement for developing cultivars with desirable plant height ideotypes in chickpea. PMID:27319304

  1. Visualizing metabolite distribution and enzymatic conversion in plant tissues by desorption electrospray ionization mass spectrometry imaging.

    PubMed

    Li, Bin; Knudsen, Camilla; Hansen, Natascha Krahl; Jørgensen, Kirsten; Kannangara, Rubini; Bak, Søren; Takos, Adam; Rook, Fred; Hansen, Steen H; Møller, Birger Lindberg; Janfelt, Christian; Bjarnholt, Nanna

    2013-06-01

    In comparison with the technology platforms developed to localize transcripts and proteins, imaging tools for visualization of metabolite distributions in plant tissues are less well developed and lack versatility. This hampers our understanding of plant metabolism and dynamics. In this study, we demonstrate that desorption electrospray ionization mass spectrometry imaging (DESI-MSI) of tissue imprints on porous Teflon may be used to accurately image the distribution of even labile plant metabolites such as hydroxynitrile glucosides, which normally undergo enzymatic hydrolysis by specific β-glucosidases upon cell disruption. This fast and simple sample preparation resulted in no substantial differences in the distribution and ratios of all hydroxynitrile glucosides between leaves from wild-type Lotus japonicus and a β-glucosidase mutant plant that lacks the ability to hydrolyze certain hydroxynitrile glucosides. In wild-type, the enzymatic conversion of hydroxynitrile glucosides and the concomitant release of glucose were easily visualized when a restricted area of the leaf tissue was damaged prior to sample preparation. The gene encoding the first enzyme in hydroxynitrile glucoside biosynthesis in L. japonicus leaves, CYP79D3, was found to be highly expressed during the early stages of leaf development, and the hydroxynitrile glucoside distribution in mature leaves reflected this early expression pattern. The utility of direct DESI-MSI of plant tissue was demonstrated using cryo-sections of cassava (Manihot esculenta) tubers. The hydroxynitrile glucoside levels were highest in the outer cell layers, as verified by LC-MS analyses. The unexpected discovery of a hydroxynitrile-derived di-glycoside shows the potential of DESI-MSI to discover and guide investigations into new metabolic routes.

  2. IGCC repowering project clean coal II project public design report. Annual report, October 1992--September 1993

    SciTech Connect

    1993-10-01

    Combustion Engineering, Inc. (CE) is participating in a $270 million coal gasification combined cycle repowering project that was designed to provide a nominal 60 MW of electricity to City, Water, Light and Power (CWL&P) in Springfield, Illinois. The Integrated Gasification Combined Cycle (IGCC) system consists of CE`s air-blown entrained flow two-stage gasifier; an advanced hot gas cleanup system; a combustion turbine adapted to use low-BTU gas; and all necessary coal handling equipment, The project is currently completing the second budget period of five. The major activities to date are: (1) Establishment of a design, cost, and schedule for the project; (2) Establishment of financial commitments; (3) Acquire design and modeling data; (4) Establishment of an approved for design (AFD) engineering package; (5) Development of a detailed cost estimate; (6) Resolution of project business issues; (7) CWL&P renewal and replacement activities; and (8) Application for environmental air permits. A Project Management Plan was generated, The conceptual design of the plant was completed and a cost and schedule baseline for the project was established in Budget Period One. This information was used to establish AFD Process Flow Diagrams, Piping and Instrument Diagrams, Equipment Data Sheets, material take offs, site modification plans and other information necessary to develop a plus or minus 20% cost estimate. Environmental permitting activities were accomplished, including the Air Permit Application, completion of the National Environmental Policy Act process, and the draft Environmental Monitoring Plan. At the end of 1992 the DOE requested that Duke Engineering and Services Inc., (DESI) be used to complete the balance of plant cost estimate. DESI was retained to do this work, DESI completed the material take off estimate and included operations, maintenance, and startup in the estimate.

  3. Lipid Profiles of Canine Invasive Transitional Cell Carcinoma of the Urinary Bladder and Adjacent Normal Tissue by Desorption Electrospray Ionization Imaging Mass Spectrometry

    PubMed Central

    Dill, Allison L.; Ifa, Demian R.; Manicke, Nicholas E.; Costa, Anthony B.; Ramos-Vara, José A.; Knapp, Deborah W.; Cooks, R. Graham

    2009-01-01

    Desorption electrospray ionization (DESI) mass spectrometry (MS) was used in an imaging mode to interrogate the lipid profiles of thin tissue sections of canine spontaneous invasive transitional cell carcinoma (TCC) of the urinary bladder (a model of human invasive bladder cancer) as well as adjacent normal tissue from four different dogs. The glycerophospholipids and sphingolipids that appear as intense signals in both the negative ion and positive ion modes were identified by tandem mass spectrometry (MS/MS) product ion scans using collision-induced dissociation. Differences in the relative distributions of the lipid species were present between the tumor and adjacent normal tissue in both the negative and positive ion modes. DESI-MS images showing the spatial distributions of particular glycerophospholipids, sphinoglipids and free fatty acids in both the negative and positive ion modes were compared to serial tissue sections that were stained with hematoxylin and eosin (H&E). Increased absolute and relative intensities for at least five different glycerophospholipids and three free fatty acids in the negative ion mode and at least four different lipid species in the positive ion mode were seen in the tumor region of the samples in all four dogs. In addition, one sphingolipid species exhibited increased signal intensity in the positive ion mode in normal tissue relative to the diseased tissue. Principal component analysis (PCA) was also used to generate unsupervised statistical images from the negative ion mode data and these images are in excellent agreement with the DESI images obtained from the selected ions and also the H&E stained tissue PMID:19810710

  4. Flame Design: A Novel Approach Developed to Produce Clean, Efficient Diffusion Flames

    NASA Technical Reports Server (NTRS)

    Axelbaum, Richard L.; Urban, David L.; Sunderland, Peter B.; Chao, Beei-Huan

    2000-01-01

    Soot formation and flame extinction are vital concerns in the combustion of fossil fuels. In particular, soot is responsible for pollutant emissions, and extinction can cause inefficient or unstable burning. Normal-gravity experiments have demonstrated that flames can be designed to improve both characteristics by redirecting some or all of the nitrogen from the oxidizer into the fuel. Such nitrogen exchange can produce permanently blue flames, which are soot free under all possible flame conditions. Furthermore, this approach can lead to stronger, extinction-resistant flames. Past investigations of nitrogen exchange were unable to identify the physical mechanisms responsible for its benefits because these mechanisms cannot be isolated when normal-gravity flames are studied. In contrast, the Diffusion Flame Extinction and Soot Inception (DESI) experiment considers spherical flames, where nearly perfect spherical symmetry affords new levels of control. Because of buoyancy, spherical flames cannot be created in Earth s gravity. DESI was conceived by principal investigator Professor R.L. Axelbaum of Washington University in St. Louis. Tests to date have utilized the 2.2-Second Drop Tower at the NASA Glenn Research Center at Lewis Field. The experiment is slated for testing aboard the International Space Station in a few years. Two mechanisms have been proposed to explain the connection between nitrogen exchange and permanently blue flames. These are the structure (chemical effects) and hydrodynamics (flow direction and speed). In normal-gravity flames, the structure and hydrodynamics are coupled, since nitrogen exchange simultaneously modifies both. Spherical microgravity flames, on the other hand, allow independent control of these factors. Specifically, structure can be modified via nitrogen exchange, and flow direction can be reversed by swapping the ambient and burner-feed gases. In DESI, these variations can be accomplished without changing the theoretical flame

  5. Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea.

    PubMed

    Upadhyaya, Hari D; Bajaj, Deepak; Narnoliya, Laxmi; Das, Shouvik; Kumar, Vinod; Gowda, C L L; Sharma, Shivali; Tyagi, Akhilesh K; Parida, Swarup K

    2016-01-01

    Identification of potential genes/alleles governing complex seed-protein content (SPC) is essential in marker-assisted breeding for quality trait improvement of chickpea. Henceforth, the present study utilized an integrated genomics-assisted breeding strategy encompassing trait association analysis, selective genotyping in traditional bi-parental mapping population and differential expression profiling for the first-time to understand the complex genetic architecture of quantitative SPC trait in chickpea. For GWAS (genome-wide association study), high-throughput genotyping information of 16376 genome-based SNPs (single nucleotide polymorphism) discovered from a structured population of 336 sequenced desi and kabuli accessions [with 150-200 kb LD (linkage disequilibrium) decay] was utilized. This led to identification of seven most effective genomic loci (genes) associated [10-20% with 41% combined PVE (phenotypic variation explained)] with SPC trait in chickpea. Regardless of the diverse desi and kabuli genetic backgrounds, a comparable level of association potential of the identified seven genomic loci with SPC trait was observed. Five SPC-associated genes were validated successfully in parental accessions and homozygous individuals of an intra-specific desi RIL (recombinant inbred line) mapping population (ICC 12299 × ICC 4958) by selective genotyping. The seed-specific expression, including differential up-regulation (>four fold) of six SPC-associated genes particularly in accessions, parents and homozygous individuals of the aforementioned mapping population with a high level of contrasting SPC (21-22%) was evident. Collectively, the integrated genomic approach delineated diverse naturally occurring novel functional SNP allelic variants in six potential candidate genes regulating SPC trait in chickpea. Of these, a non-synonymous SNP allele-carrying zinc finger transcription factor gene exhibiting strong association with SPC trait was found to be the most

  6. A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in Chickpea

    PubMed Central

    Bajaj, Deepak; Das, Shouvik; Upadhyaya, Hari D.; Ranjan, Rajeev; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C. L. Laxmipathi; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K.; Parida, Swarup K.

    2015-01-01

    The study identified 9045 high-quality SNPs employing both genome-wide GBS- and candidate gene-based SNP genotyping assays in 172, including 93 cultivated (desi and kabuli) and 79 wild chickpea accessions. The GWAS in a structured population of 93 sequenced accessions detected 15 major genomic loci exhibiting significant association with seed coat color. Five seed color-associated major genomic loci underlying robust QTLs mapped on a high-density intra-specific genetic linkage map were validated by QTL mapping. The integration of association and QTL mapping with gene haplotype-specific LD mapping and transcript profiling identified novel allelic variants (non-synonymous SNPs) and haplotypes in a MATE secondary transporter gene regulating light/yellow brown and beige seed coat color differentiation in chickpea. The down-regulation and decreased transcript expression of beige seed coat color-associated MATE gene haplotype was correlated with reduced proanthocyanidins accumulation in the mature seed coats of beige than light/yellow brown seed colored desi and kabuli accessions for their coloration/pigmentation. This seed color-regulating MATE gene revealed strong purifying selection pressure primarily in LB/YB seed colored desi and wild Cicer reticulatum accessions compared with the BE seed colored kabuli accessions. The functionally relevant molecular tags identified have potential to decipher the complex transcriptional regulatory gene function of seed coat coloration and for understanding the selective sweep-based seed color trait evolutionary pattern in cultivated and wild accessions during chickpea domestication. The genome-wide integrated approach employed will expedite marker-assisted genetic enhancement for developing cultivars with desirable seed coat color types in chickpea. PMID:26635822

  7. Personalized monitoring of therapeutic salicylic acid in dried blood spots using a three-layer setup and desorption electrospray ionization mass spectrometry.

    PubMed

    Siebenhaar, Markus; Küllmer, Kai; Fernandes, Nuno Miguel de Barros; Hüllen, Volker; Hopf, Carsten

    2015-09-01

    Desorption electrospray ionization (DESI) mass spectrometry is an emerging technology for direct therapeutic drug monitoring in dried blood spots (DBS). Current DBS methods require manual application of small molecules as internal standards for absolute drug quantification. With industrial standardization in mind, we superseded the manual addition of standard and built a three-layer setup for robust quantification of salicylic acid directly from DBS. We combined a dioctyl sodium sulfosuccinate weave facilitating sample spreading with a cellulose layer for addition of isotope-labeled salicylic acid as internal standard and a filter paper for analysis of the standard-containing sample by DESI-MS. Using this setup, we developed a quantification method for salicylic acid from whole blood with a validated linear curve range from 10 to 2000 mg/L, a relative standard deviation (RSD%) ≤14%, and determination coefficients of 0.997. The limit of detection (LOD) was 8 mg/L and the lower limit of quantification (LLOQ) was 10 mg/L. Recovery rates in method verification by LC-MS/MS were 97 to 101% for blinded samples. Most importantly, a study in healthy volunteers after administration of a single dose of Aspirin provides evidence to suggest that the three-layer setup may enable individual pharmacokinetic and endpoint testing following blood collection by finger pricking by patients at home. Taken together, our data suggests that DBS-based quantification of drugs by DESI-MS on pre-manufactured three-layer cartridges may be a promising approach for future near-patient therapeutic drug monitoring.

  8. Current experiments in particle physics - particle data group

    SciTech Connect

    Galic, H.; Lehar, F.; Kettle, P.R.

    1996-09-01

    This report contains summaries of current and recent experiments in Particle Physics. Included are experiments at BEPC (Beijing), BNL, CEBAF, CERN, CESR, DESY, FNAL, Frascati, ITEP (Moscow), JINR (Dubna), KEK, LAMPF, Novosibirsk, PNPI (St. Petersburg), PSI, Saclay, Serpukhov, SLAC, and TRIUMF, and also several proton decay and solar neutrino experiments. Excluded are experiments that finished taking data before 1991. Instructions are given for the World Wide Web (WWW) searching of the computer database (maintained under the SLAC-SPIRES system) that contains the summaries.

  9. Status of 3.9 GHz superconducting RF cavity technology at Fermilab

    SciTech Connect

    Harms, E.; Arkan, T.; Bellantoni, L.; Carter, H.; Edwards, H.; Foley, M.; Khabiboulline, T.; Mitchell, D.; Olis, D.; Rowe, A.; Solyak, N.; /Fermilab

    2007-06-01

    Fermilab is involved in an effort to assemble 3.9 GHz superconducting RF cavities into a four cavity cryomodule for use at the DESY TTF/FLASH facility as a third harmonic structure. The design gradient of the cavities is 14 MV/m. This effort involves design, fabrication, intermediate testing, assembly, and eventual delivery of the cryomodule. We report on all facets of this enterprise from design through future plans. Included will be test results of single 9-cell cavities, lessons learned, and current status.

  10. High energy accelerator and colliding beam user group. Progress report, March 1, 1983-February 29, 1984

    SciTech Connect

    Not Available

    1983-01-01

    Topics covered in this research summary include: status of the OPAL collaboration at LEP, CERN; two-photon physics at PLUTO; search for new particles at JADE; neutrinoless double beta decay at DESY; Fermilab jet experiment; neutrino deuterium experiment in the 15 foot bubble chamber at Fermilab; deep inelastic muon experiment at Fermilab; new experiments at the proton-antiproton collider; neutrino-electron scattering at Los Alamos; parity violation in proton-proton scattering; an upgrade of laboratory and computer facilities; and a study of bismuth germanate as a durable scintillation crystal. (GHT)

  11. Longitudinal Diagnostics of Short Bunches at FLASH

    SciTech Connect

    Khan, Shaukat

    2009-01-22

    Novel acceleration concepts such as laser- or beam-driven plasma acceleration require advanced diagnostic techniques to characterize and monitor the beam. A particular challenge is to measure bunch lengths of the order of 10 femtoseconds. Several methods are currently explored at the free-electron laser FLASH at DESY/Hamburg and will be discussed it this paper, such as electro-optical sampling, streaking bunches with a transversely deflecting cavity, and -most recently implemented at FLASH--the optical-replica synthesizer, a laser-based technique promising a time resolution of a few femtoseconds.

  12. A measurement of the tau lepton lifetime at ARGUS

    NASA Astrophysics Data System (ADS)

    Saull, Patrick Richard Behrendt

    Data taken with the ARGUS detector at DESY, Hamburg, specifically toverlinetoverline pairs produced from e+e - collisions in the energy range (10.4-10.6)GeV, are used to make a precision measurement of the tau lifetime. A new method is introduced which is independent of the beam position and envelope, and applicable to tau events having one-three topology. Applied to ARGUS data the method yields a value for the tau lifetime of tt=287+/-11(st atistical)+/-8(systemat ic)fs.

  13. Self-modulation of long electron beams in plasma at PITZ

    SciTech Connect

    Martinez de la Ossa, A.; Gross, M.; Gruener, F.; Khojoyan, M.; Krasilnikov, M.; Oppelt, A.; Stephan, F.; Schroeder, C. B.; Osterhoff, J.

    2012-12-21

    The Photo Injector Test facility at DESY, Zeuthen site (PITZ), offers the unique possibility to study and demonstrate the self-modulation of long electron bunches in plasma. A set of numerical simulations with the particle-in-cell code OSIRIS has been carried out for a better understanding of the process. Of particular interest is the measurement of the energy modulation induced to the beam itself by means of the generated wakefields in plasma. It will reflect the key properties of the accelerating electric fields such as their magnitude and their phase velocity, both of significant importance in the design of experiments relying on this technique.

  14. Gain length dependence on phase shake in the VUV-FEL at the TESLA Test Facility

    SciTech Connect

    Pflueger, J.; Pierini, P.

    1995-12-31

    The TTF VUV FEL, which is in its design stage at DESY, consists of a 30 m long SASE FEL which will radiate around 6 nm, driven by a superconducting linac with final energy of 1 GeV. One of the important issues in its design is the undulator performance, which is studied in this paper. The present setup, including FODO lattice, is discussed in this paper. Results of simulations, including the realistic wiggler field errors and beam stearing, are presented. Dependence of the performance, in particular the gain and saturation length as well as the saturation peak power, on the wiggler field errors is discussed.

  15. A balloon-borne ionization spectrometer with very large aperture for the detection of high energy cosmic rays

    NASA Technical Reports Server (NTRS)

    Atallah, K.; Modlinger, A.; Schmidt, W. K. H.; Cleghorn, T. F.

    1975-01-01

    A balloon experiment which was used to determine the chemical composition of very high-energy cosmic rays up to and beyond 100 GeV/nucleon is described. The detector had a geometric factor of 1 sq m sr and a total weight on the balloon of 2100 kg. The apparatus consisted of an ionization spectrometer, spark chambers, and plastic scintillation and Cherenkov counters. It was calibrated at CERN up to 24 GeV/c protons and at DESY up to 7 GeV/c electrons. In October 1972 it was flown successfully on a stratospheric balloon.

  16. Feasibility of a ring FEL at low emittance storage rings

    NASA Astrophysics Data System (ADS)

    Agapov, I.

    2015-09-01

    A scheme for generating coherent radiation at latest generation low emittance storage rings such as PETRA III at DESY (Balewski et al., 2004 [1]) is proposed. The scheme is based on focusing and subsequent defocusing of the electron beam in the longitudinal phase space at the undulator location. The expected performance characteristics are estimated for radiation in the wavelength range of 500-1500 eV. It is shown that the average brightness is increased by several orders of magnitude compared to spontaneous undulator radiation, which can open new perspectives for photon-hungry soft X-ray spectroscopy techniques.

  17. Direct Protocol for Ambient Mass Spectrometry Imaging on Agar Culture.

    PubMed

    Angolini, Célio Fernando F; Vendramini, Pedro Henrique; Araújo, Francisca D S; Araújo, Welington L; Augusti, Rodinei; Eberlin, Marcos N; de Oliveira, Luciana Gonzaga

    2015-07-01

    Herein we describe a new protocol that allows direct mass spectrometry imaging (IMS) of agar cultures. A simple sample dehydration leads to a thin solid agar, which enables the direct use of spray-based ambient mass spectrometry techniques. To demonstrate its applicability, metal scavengers siderophores were imaged directly from agar culture of S. wadayamensis, and well resolved and intense images were obtained using both desorption electrospray ionization (DESI) and easy ambient sonic-spray ionization (EASI) with well-defined selective spatial distributions for the free and the metal-bound molecules, providing clues for their roles in cellular metabolism.

  18. Compilation of current high-energy-physics experiments

    SciTech Connect

    Wohl, C.G.; Kelly, R.L.; Armstrong, F.E.

    1980-04-01

    This is the third edition of a compilation of current high energy physics experiments. It is a collaborative effort of the Berkeley Particle Data Group, the SLAC library, and ten participating laboratories: Argonne (ANL), Brookhaven (BNL), CERN, DESY, Fermilab (FNAL), the Institute for Nuclear Study, Tokyo (INS), KEK, Rutherford (RHEL), Serpukhov (SERP), and SLAC. The compilation includes summaries of all high energy physics experiments at the above laboratories that (1) were approved (and not subsequently withdrawn) before about January 1980, and (2) had not completed taking of data by 1 January 1976.

  19. Diffractive hadroproduction of W{sup {+-}} and Z{sup 0} bosons at high energies

    SciTech Connect

    Ducati, M. B. Gay; Machado, M. M.; Machado, M. V. T.

    2008-10-13

    An analysis of W{sup {+-}} and Z{sup 0} hard diffractive hadroproduction at high energies is presented obtained using the simple assumption of Regge factorization and considering the recent diffractive parton density functions extracted by the H1 Collaboration at DESY-HERA. The corresponding multiple Pomeron exchange corrections to the single Pomeron one is considered by taking into account by a gap survival probability factor. It is shown that the ratio of diffractive to nondiffractive boson production is in good agreement with the Tevatron data. Estimations which are relevant for the incoming measurements at the LHC are discussed.

  20. Diffractive hadroproduction of W{sup {+-}} and Z{sup 0} bosons at high energies

    SciTech Connect

    Gay Ducati, M. B.; Machado, M. M.; Machado, M. V. T.

    2007-06-01

    Results from a phenomenological analysis of W and Z hard diffractive hadroproduction at high energies are reported. Using the Regge factorization approach, we consider the recent diffractive parton density functions extracted by the H1 Collaboration at DESY-HERA. In addition, we take into account multiple Pomeron exchange corrections considering a gap survival probability factor. It is found that the ratio of diffractive to nondiffractive boson production is in good agreement with the CDF and D0 data. We make predictions which could be compared to future measurements at the LHC.

  1. omniSpect: an open MATLAB-based tool for visualization and analysis of matrix-assisted laser desorption/ionization and desorption electrospray ionization mass spectrometry images.

    PubMed

    Parry, R Mitchell; Galhena, Asiri S; Gamage, Chaminda M; Bennett, Rachel V; Wang, May D; Fernández, Facundo M

    2013-04-01

    We present omniSpect, an open source web- and MATLAB-based software tool for both desorption electrospray ionization (DESI) and matrix-assisted laser desorption ionization (MALDI) mass spectrometry imaging (MSI) that performs computationally intensive functions on a remote server. These functions include converting data from a variety of file formats into a common format easily manipulated in MATLAB, transforming time-series mass spectra into mass spectrometry images based on a probe spatial raster path, and multivariate analysis. OmniSpect provides an extensible suite of tools to meet the computational requirements needed for visualizing open and proprietary format MSI data.

  2. Calculation of mechanical vibration frequencies of stiffened superconducting cavities

    SciTech Connect

    Black, S.J.; Spalek, G.

    1992-09-01

    We calculated the frequencies of transverse and longitudinal mechanical-vibration modes of the HEPL- modified, CERN/DESY four-cell superconducting cavity, using finite-element techniques. We compared the results of these calculations, including the stiffening of the cavity with rods, with mode frequencies measured at HEPL. The correlation between data was significant. The same techniques were also used to design and optimize the stiffening scheme for the seven-cell 805-MHz superconducting cavity being developed at Los Alamos. In this report, we describe the final stiffening scheme and the results of our calculations.

  3. Calculation of mechanical vibration frequencies of stiffened superconducting cavities

    SciTech Connect

    Black, S.J.; Spalek, G.

    1992-01-01

    We calculated the frequencies of transverse and longitudinal mechanical-vibration modes of the HEPL- modified, CERN/DESY four-cell superconducting cavity, using finite-element techniques. We compared the results of these calculations, including the stiffening of the cavity with rods, with mode frequencies measured at HEPL. The correlation between data was significant. The same techniques were also used to design and optimize the stiffening scheme for the seven-cell 805-MHz superconducting cavity being developed at Los Alamos. In this report, we describe the final stiffening scheme and the results of our calculations.

  4. First results of the plasma wakefield acceleration experiment at PITZ

    NASA Astrophysics Data System (ADS)

    Lishilin, O.; Gross, M.; Brinkmann, R.; Engel, J.; Grüner, F.; Koss, G.; Krasilnikov, M.; Martinez de la Ossa, A.; Mehrling, T.; Osterhoff, J.; Pathak, G.; Philipp, S.; Renier, Y.; Richter, D.; Schroeder, C.; Schütze, R.; Stephan, F.

    2016-09-01

    The self-modulation instability of long particle beams was proposed as a new mechanism to produce driver beams for proton driven plasma wakefield acceleration (PWFA). The PWFA experiment at the Photo Injector Test facility at DESY, Zeuthen site (PITZ) was launched to experimentally demonstrate and study the self-modulation of long electron beams in plasma. Key aspects for the experiment are the very flexible photocathode laser system, a plasma cell and well-developed beam diagnostics. In this contribution we report about the plasma cell design, preparatory experiments and the results of the first PWFA experiment at PITZ.

  5. Cavity Preparation/assembly Techniques and Impact on Q, Realistic Q - Factors in a Module, Review of Modules

    SciTech Connect

    Peter Kneisel

    2005-03-19

    This contribution summarizes the surface preparation procedures for niobium cavities presently used both in laboratory experiments and for modules, such as buffered chemical polishing (BCP), electropolishing (EP), high pressure ultrapure water rinsing (HPR), CO{sub 2} snow cleaning and high temperature heat treatments for hydrogen degassing or postpurification. The impact of surface treatments and the degree of cleanliness during assembly procedures on cavity performance (Q - value and accelerating gradient E{sub acc}) will be discussed. In addition, an attempt will be made to summarize the experiences made in module assemblies in different labs/projects such as DESY(TTF), Jlab (Upgrade) and SNS.

  6. Pancreatic Cancer Surgical Resection Margins: Molecular Assessment by Mass Spectrometry Imaging

    PubMed Central

    Eberlin, Livia S.; Zare, Richard N.; Tibshirani, Robert; Longacre, Teri A.; Jalali, Moe; Norton, Jeffrey A.; Poultsides, George A.

    2016-01-01

    Background Surgical resection with microscopically negative margins remains the main curative option for pancreatic cancer; however, in practice intraoperative delineation of resection margins is challenging. Ambient mass spectrometry imaging has emerged as a powerful technique for chemical imaging and real-time diagnosis of tissue samples. We applied an approach combining desorption electrospray ionization mass spectrometry imaging (DESI-MSI) with the least absolute shrinkage and selection operator (Lasso) statistical method to diagnose pancreatic tissue sections and prospectively evaluate surgical resection margins from pancreatic cancer surgery. Methods and Findings Our methodology was developed and tested using 63 banked pancreatic cancer samples and 65 samples (tumor and specimen margins) collected prospectively during 32 pancreatectomies from February 27, 2013, to January 16, 2015. In total, mass spectra for 254,235 individual pixels were evaluated. When cross-validation was employed in the training set of samples, 98.1% agreement with histopathology was obtained. Using an independent set of samples, 98.6% agreement was achieved. We used a statistical approach to evaluate 177,727 mass spectra from samples with complex, mixed histology, achieving an agreement of 81%. The developed method showed agreement with frozen section evaluation of specimen margins in 24 of 32 surgical cases prospectively evaluated. In the remaining eight patients, margins were found to be positive by DESI-MSI/Lasso, but negative by frozen section analysis. The median overall survival after resection was only 10 mo for these eight patients as opposed to 26 mo for patients with negative margins by both techniques. This observation suggests that our method (as opposed to the standard method to date) was able to detect tumor involvement at the margin in patients who developed early recurrence. Nonetheless, a larger cohort of samples is needed to validate the findings described in this study

  7. Planetary Mission Entry Vehicles Quick Reference Guide. Version 3.0

    NASA Technical Reports Server (NTRS)

    Davies, Carol; Arcadi, Marla

    2006-01-01

    This is Version 3.0 of the planetary mission entry vehicle document. Three new missions, Re-entry F, Hayabusa, and ARD have been added to t he previously published edition (Version 2.1). In addition, the Huyge ns mission has been significantly updated and some Apollo data correc ted. Due to the changing nature of planetary vehicles during the desi gn, manufacture and mission phases, and to the variables involved in measurement and computation, please be aware that the data provided h erein cannot be guaranteed. Contact Carol Davies at cdavies@mail.arc. nasa.gov to correct or update the current data, or to suggest other missions.

  8. Current experiments in elementary particle physics

    SciTech Connect

    Wohl, C.G.; Armstrong, F.E.; Trippe, T.G.; Yost, G.P. ); Oyanagi, Y. ); Dodder, D.C. ); Ryabov, Yu.G.; Slabospitsky, S.R. . Inst. Fiziki Vysokikh Ehnergij); Frosch, R. (Swiss Inst. for Nuclear Research, Villigen (Switzerla

    1989-09-01

    This report contains summaries of 736 current and recent experiments in elementary particle physics (experiments that finished taking data before 1982 are excluded). Included are experiments at Brookhaven, CERN, CESR, DESY, Fermilab, Tokyo Institute of Nuclear Studies, Moscow Institute of Theoretical and Experimental Physics, Joint Institute for Nuclear Research (Dubna), KEK, LAMPF, Novosibirsk, PSI/SIN, Saclay, Serpukhov, SLAC, and TRIUMF, and also several underground experiments. Also given are instructions for searching online the computer database (maintained under the SLAC/SPIRES system) that contains the summaries. Properties of the fixed-target beams at most of the laboratories are summarized.

  9. Current experiments in elementary particle physics. Revised

    SciTech Connect

    Galic, H.; Wohl, C.G.; Armstrong, B.; Dodder, D.C.; Klyukhin, V.I.; Ryabov, Yu.G.; Illarionova, N.S.; Lehar, F.; Oyanagi, Y.; Olin, A.; Frosch, R.

    1992-06-01

    This report contains summaries of 584 current and recent experiments in elementary particle physics. Experiments that finished taking data before 1986 are excluded. Included are experiments at Brookhaven, CERN, CESR, DESY, Fermilab, Tokyo Institute of Nuclear Studies, Moscow Institute of Theoretical and Experimental Physics, KEK, LAMPF, Novosibirsk, Paul Scherrer Institut (PSI), Saclay, Serpukhov, SLAC, SSCL, and TRIUMF, and also several underground and underwater experiments. Instructions are given for remote searching of the computer database (maintained under the SLAC/SPIRES system) that contains the summaries.

  10. COMPILATION OF CURRENT HIGH ENERGY PHYSICS EXPERIMENTS

    SciTech Connect

    Wohl, C.G.; Kelly, R.L.; Armstrong, F.E.; Horne, C.P.; Hutchinson, M.S.; Rittenberg, A.; Trippe, T.G.; Yost, G.P.; Addis, L.; Ward, C.E.W.; Baggett, N.; Goldschmidt-Clermong, Y.; Joos, P.; Gelfand, N.; Oyanagi, Y.; Grudtsin, S.N.; Ryabov, Yu.G.

    1981-05-01

    This is the fourth edition of our compilation of current high energy physics experiments. It is a collaborative effort of the Berkeley Particle Data Group, the SLAC library, and nine participating laboratories: Argonne (ANL), Brookhaven (BNL), CERN, DESY, Fermilab (FNAL), the Institute for Nuclear Study, Tokyo (INS), KEK, Serpukhov (SERP), and SLAC. The compilation includes summaries of all high energy physics experiments at the above laboratories that (1) were approved (and not subsequently withdrawn) before about April 1981, and (2) had not completed taking of data by 1 January 1977. We emphasize that only approved experiments are included.

  11. Cavity preparation/assembly techniques and impact on Q, realistic Q-factors in a module, review of modules

    NASA Astrophysics Data System (ADS)

    Kneisel, Peter

    2006-02-01

    This contribution summarizes the surface preparation procedures for niobium cavities presently used both in laboratory experiments and for modules, such as buffered chemical polishing (BCP), electropolishing (EP), high pressure ultrapure water rinsing (HPR), CO 2 snow cleaning and high temperature heat treatments for hydrogen degassing or post-purification. The impact of surface treatments and the degree of cleanliness during assembly procedures on cavity performance ( Q-value and accelerating gradient Eacc) will be discussed. In addition, an attempt will be made to summarize the experiences made in module assemblies in different labs/projects such as DESY (TTF), Jlab (Upgrade) and SNS.

  12. Diagnostic technique applied for FEL electron bunches

    NASA Astrophysics Data System (ADS)

    Brovko, O.; Grebentsov, A.; Morozov, N.; Syresin, E.; Yurkov, M.

    2016-05-01

    Diagnostic technique applied for FEL ultrashort electron bunches is developed at JINR-DESY collaboration within the framework of the FLASH and XFEL projects. Photon diagnostics are based on calorimetric measurements and detection of undulator radiation. The infrared undulator constructed at JINR and installed at FLASH is used for longitudinal bunch shape measurements and for two-color lasing provided by the FIR and VUV undulators. The pump probe experiments with VUV and FIR undulators provide the bunch profile measurements with resolution of several femtosecond. The new three microchannel plates (MCP) detectors operated in X-ray range are under development now in JINR for SASE1-SASE 3 European XFEL.

  13. The ratio of the beauty structure functions Rb=FLb/F2b at low x

    NASA Astrophysics Data System (ADS)

    Boroun, G. R.

    2014-07-01

    We study the structure functions Fkb(x,Q2) (k=2,L) and the reduced cross section σrb(x,Q2) for small values of Bjorken's x variable with respect to the hard (Lipatov) pomeron for the gluon distribution and provide a compact formula for the ratio Rb that is useful to extract the beauty structure function from the beauty reduced cross section, in particular at DESY HERA. Also we show that the effects of the nonlinear corrections to the gluon distribution tame the behavior of the beauty structure function and the beauty reduced cross section at low x.

  14. Pion in deep inelastic scattering

    SciTech Connect

    Povh, B.

    2008-10-13

    The forward neutron production in the ep collisions at 300 GeV measured by the H1 and ZEUS Collaborations at DESY has been used to estimate the total probability for the proton fluctuation into n{pi}{sup +} and p{pi}{sup 0}. The probability found is on the order of the 30%. This number is compared with the numbers of obtained for the probability of quark fluctuation into {pi}{sup +} from several alternative DIS processes (Gottfried sum rule, polarized structure function) and the axial-vector coupling constant, where the pion fluctuation is believed to play an important role.

  15. Ultrafast Coherent Diffraction Imaging with X-ray Free-Electron Lasers

    SciTech Connect

    Chapman, H N; Bajt, S; Barty, A; Benner, W; Bogan, M; Frank, M; Hau-Riege, S; London, R; Marchesini, S; Spiller, E; Szoke, A; Woods, B; Boutet, S; Hodgson, K; Hajdu, J; Bergh, M; Burmeister, F; Caleman, C; Huldt, G; Maia, F; Seibert, M M; der Spoel, D v

    2006-08-22

    The ultrafast pulses from X-ray free-electron lasers will enable imaging of non-periodic objects at near-atomic resolution [1, Neutze]. These objects could include single molecules, protein complexes, or virus particles. The specimen would be completely destroyed by the pulse in a Coulomb explosion, but that destruction will only happen after the pulse. The scattering from the sample will give structural information about the undamaged object. There are many technical challenges that must be addressed before carrying out such experiments at an XFEL, which we are doing so with experiments at FLASH, the soft-X-ray FEL at DESY.

  16. Computer modelling of statistical properties of SASE FEL radiation

    NASA Astrophysics Data System (ADS)

    Saldin, E. L.; Schneidmiller, E. A.; Yurkov, M. V.

    1997-06-01

    The paper describes an approach to computer modelling of statistical properties of the radiation from self amplified spontaneous emission free electron laser (SASE FEL). The present approach allows one to calculate the following statistical properties of the SASE FEL radiation: time and spectral field correlation functions, distribution of the fluctuations of the instantaneous radiation power, distribution of the energy in the electron bunch, distribution of the radiation energy after monochromator installed at the FEL amplifier exit and the radiation spectrum. All numerical results presented in the paper have been calculated for the 70 nm SASE FEL at the TESLA Test Facility being under construction at DESY.

  17. Gigawatt, femtosecond VUV pulses from a SASE FEL: Photon beam characterisation and first applications

    NASA Astrophysics Data System (ADS)

    Tiedtke, K.

    2002-11-01

    Parallel to the enormous progress in optical and conventional X-ray lasers there have also been tremendous advances in the field of Free Electron Lasers (FELs) based on the principle of Self-Amplified Spontaneous Emission (SASE). At the TESLA Test Facility (TTF FEL) at DESY, a linac-driven SASE FEL has produced short pulses with GW peak power in the wavelengths range of 80-120 nm. The radiation pulse length has been adjusted between 30 fs and 200 fs. Currently an energy upgrade of the TTF linear accelerator to 1 GeV is being prepared which will make radiation wavelengths down to 6 nm available for users.

  18. Photon diagnostics for the study of electron beam properties of a VUV SASE-FEL

    NASA Astrophysics Data System (ADS)

    Gerth, Ch.; Faatz, B.; Lokajczyk, T.; Treusch, R.; Feldhaus, J.

    2001-12-01

    A single-pass free-electron laser operating in the self-amplified spontaneous-emission (SASE) mode at around 100 nm is currently under test at the TESLA Test Facility at DESY. After first observation of SASE in February 2000, the photon beam has been characterized by different techniques. We present the methods of VUV photon diagnostics that were used to measure the spectral and angular distribution of the photon beam and how these properties are affected by the electron beam energy and orbit in the undulator.

  19. A possible experiment at LEUTL to characterize surface roughness Wakefield effects

    NASA Astrophysics Data System (ADS)

    Biedron, Sandra G.; Dattoli, Giuseppe; Fawley, William M.; Freund, Henry P.; Huang, Zhirong; Lewellen, John W.; Milton, Stephen V.; Nuhn, Heinz-Dieter

    2001-08-01

    Wakefield effects due to internal vacuum chamber roughness may increase the electron beam energy spread and so have become an immediate concern for future x-ray free-electron laser (FEL) project developments such as the SLAC Linac Coherent Light Source (LCLS) and the DESY TESLA x-ray FEL. We describe a possible experiment to characterize the effects of surface roughness on an FEL driven by self-amplified spontaneous emission (SASE) operation. Although the specific system described is not completely identical to the above-proposed projects, much useful scaling information could be obtained and applied to shorter wavelength systems.

  20. Mapping matter jointly with CMB lensing and Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Huffenberger, Kevin; Maldonado, Felipe; Rotti, Aditya

    2015-04-01

    In the near future, Stage III and Stage IV Cosmic Microwave Background experiments will measure to high precision the lensing distortions that trace matter fluctuations in the universe. On a similar timescale, WFIRST, EUCLID, DESI, LSST, and other surveys will provide galaxy redshift information, imaging, and cosmic shear data over large regions of the sky. Taking a holistic, Bayesian approach to combine datasets, we seek to understand keenly the statistical properties of joint estimates of the matter distribution and its correlations, including their non-Gaussian likelihoods.

  1. Mapping matter jointly with CMB lensing and Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Huffenberger, Kevin; Rotti, Aditya; Maldonado, Felipe

    2016-01-01

    In the near future, Stage III and Stage IV Cosmic Microwave Background experiments will measure to high precision the lensing distortions that trace matter fluctuations in the universe. On a similar timescale DES, HSC, WFIRST, EUCLID, DESI, LSST, and other surveys will provide galaxy redshift information, imaging, and cosmic shear data over large regions of the sky. Taking a holistic, Bayesian approach to combine datasets, we seek to understand the statistical properties of joint estimates of the matter distribution and its correlations, including their non-Gaussian likelihoods.

  2. Design and performance of a lead fluoride detector as a luminosity monitor

    NASA Astrophysics Data System (ADS)

    Pérez Benito, R.; Khaneft, D.; O'Connor, C.; Capozza, L.; Diefenbach, J.; Gläser, B.; Ma, Y.; Maas, F. E.; Rodríguez Piñeiro, D.

    2016-08-01

    Precise luminosity measurements for the OLYMPUS two-photon exchange experiment at DESY were performed by counting scattering events with alternating beams of electrons and positrons incident on atomic electrons in a gaseous hydrogen target. Final products of Møller, Bhabha, and pair annihilation interactions were observed using a pair of lead fluoride Cherenkov calorimeters with custom housings and electronics, adapted from a system used by the A4 parity violation experiment at MAMI. This paper describes the design, calibration, and operation of these detectors. An explanation of the Monte Carlo methods used to simulate the physical processes involved both at the scattering vertices and in the detector apparatus is also included.

  3. Cosmic Radiation Fields: Sources in the early Universe

    NASA Astrophysics Data System (ADS)

    Raue, Martin; Kneiske, Tanja; Horns, Dieter; Elsaesser, Dominik; Hauschildt, Peter

    The workshop "Cosmic Radiation Fields - Sources in the Early Universe" (CRF 2010) focuses on the connection between the extragalactic infrared background and sources in the early universe, in particular stars powered by dark matter burning (Dark Stars; DS). The workshop covers the following topics: the cosmic infrared background, formation of early stars, dark stars, effect of dark matter in the early universe, dark matter halos, primordial star formation rate, and reionization. Further information can be found on the conference webpage: http://www.desy.de/crf2010/. Organizing committee: Tanja Kneiske, Martin Raue, Dominik Elsaesser, Alexander Gewering-Peine, Peter Hausschildt, Dieter Horns, and Andreas Maurer.

  4. Control System Design for Automatic Cavity Tuning Machines

    SciTech Connect

    Carcagno, R.; Khabiboulline, T.; Kotelnikov, S.; Makulski, A.; Nehring, R.; Nogiec, J.; Ross, M.; Schappert, W.; Goessel, A.; Iversen, J.; Klinke, D.; /DESY

    2009-05-01

    A series of four automatic tuning machines for 9-cell TESLA-type cavities are being developed and fabricated in a collaborative effort among DESY, FNAL, and KEK. These machines are intended to support high-throughput cavity fabrication for construction of large SRF-based accelerator projects. Two of these machines will be delivered to cavity vendors for the tuning of XFEL cavities. The control system for these machines must support a high level of automation adequate for industrial use by non-experts operators. This paper describes the control system hardware and software design for these machines.

  5. Imprint Desorption Electrospray Ionization Mass Spectrometry Imaging for Monitoring Secondary Metabolites Production during Antagonistic Interaction of Fungi.

    PubMed

    Tata, Alessandra; Perez, Consuelo; Campos, Michel L; Bayfield, Mark A; Eberlin, Marcos N; Ifa, Demian R

    2015-12-15

    Direct analysis of microbial cocultures grown on agar media by desorption electrospray ionization mass spectrometry (DESI-MS) is quite challenging. Due to the high gas pressure upon impact with the surface, the desorption mechanism does not allow direct imaging of soft or irregular surfaces. The divots in the agar, created by the high-pressure gas and spray, dramatically change the geometry of the system decreasing the intensity of the signal. In order to overcome this limitation, an imprinting step, in which the chemicals are initially transferred to flat hard surfaces, was coupled to DESI-MS and applied for the first time to fungal cocultures. Note that fungal cocultures are often disadvantageous in direct imaging mass spectrometry. Agar plates of fungi present a complex topography due to the simultaneous presence of dynamic mycelia and spores. One of the most devastating diseases of cocoa trees is caused by fungal phytopathogen Moniliophthora roreri. Strategies for pest management include the application of endophytic fungi, such as Trichoderma harzianum, that act as biocontrol agents by antagonizing M. roreri. However, the complex chemical communication underlying the basis for this phytopathogen-dependent biocontrol is still unknown. In this study, we investigated the metabolic exchange that takes place during the antagonistic interaction between M. roreri and T. harzianum. Using imprint-DESI-MS imaging we annotated the secondary metabolites released when T. harzianum and M. roreri were cultured in isolation and compared these to those produced after 3 weeks of coculture. We identified and localized four phytopathogen-dependent secondary metabolites, including T39 butenolide, harzianolide, and sorbicillinol. In order to verify the reliability of the imprint-DESI-MS imaging data and evaluate the capability of tape imprints to extract fungal metabolites while maintaining their localization, six representative plugs along the entire M. roreri/T. harzianum

  6. The design and performance of 150-MW S-band klystrons

    SciTech Connect

    Sprehn, D.; Phillips, R.M.; Caryotakis, G.

    1994-09-01

    As part of an international collaboration, the Stanford Linear Accelerator Center (SLAC) klystron group has designed, fabricated and tested a 60 Hz, 3 {mu}s, 150 MW klystron built for Deutsches Elektronen Synchrotron (DESY). A test diode with a 535 kV, 700 A electron beam was constructed to verify the gun operation. The first klystron was built and successfully met design specifications. This paper discusses design issues and experimental results of the diode and klystron including the suppression of gun oscillations.

  7. Design of a New Electropolishing System for SRF Cavities

    SciTech Connect

    Tajima, Tsuyoshi; Boffo, Cristian; Kelly, M.P.; Mammosser, John

    2006-07-01

    Electropolishing (EP) is considered the baseline surface treatment for Superconducting RF (SRF) cavities to achieve >35 MV/m accelerating gradient for the International Linear Collider (ILC). Based on the lessons learned at the forerunners such as KEK/Nomura, DESY and JLAB and on the recent studies, we have started a new design of the next EP system that will be installed in the US. This paper presents requirements, specifications, and the detail of the system design as well as the path forward towards the future industrialization.

  8. Current Experiments in Particle Physics. 1996 Edition.

    SciTech Connect

    Galic, Hrvoje

    2003-06-27

    This report contains summaries of current and recent experiments in Particle Physics. Included are experiments at BEPC (Beijing), BNL, CEBAF, CERN, CESR, DESY, FNAL, Frascati, ITEP (Moscow), JINR (Dubna), KEK, LAMPF, Novosibirsk, PNPI (St. Petersburg), PSI, Saclay, Serpukhov, SLAC, and TRIUMF, and also several proton decay and solar neutrino experiments. Excluded are experiments that finished taking data before 1991. Instructions are given for the World Wide Web (WWW) searching of the computer database (maintained under the SLAC-SPIRES system) that contains the summaries.

  9. The Superconducting RF Photoinjector at ELBE--First Operational Experience

    SciTech Connect

    Teichert, J.; Arnold, A.; Buettig, H.; Janssen, D.; Justus, M.; Lehnert, U.; Michel, P.; Murcek, P.; Schamlott, A.; Schneider, C.; Schurig, R.; Staufenbiel, F.; Xiang, R.; Kamps, T.; Rudolph, J.; Schenk, M.; Klemz, G.; Will, I.

    2009-08-04

    An RF photoinjector with a superconducting cavity (SRF gun) for installation at the Radiation Source ELBE was developed within a collaboration of BESSY, DESY, FZD, and MBI. This new and promising injector type allows CW operation and has the potential for the production of high-brightness electron beams. The gun cryostat, the electron diagnostic beamline, and the driver laser with optical beamline were installed. In November 2007 the first beam was produced. Results of the beam parameter measurements with Cs{sub 2}Te photo cathodes are presented.

  10. Extraction of pion non-perturbative fragmentation functions in ZM-VFNS

    SciTech Connect

    Soleymaninia, M.; Khorramian, A. N.; Moosavinejad, S. M.

    2012-10-23

    We present pion non-perturbative fragmentation functions (non-pFFs) at next-to-leading order (NLO) obtained through a global fit to electron-positron annihilation data from CERN LEP1, SLAC SLC, DESY and KEK, using zero-mass variable-flavor-number scheme. We apply the obtained non-pFFs to predict the scaled-energy distribution of {pi}{sup {+-}} inclusively produced in top-quark decays. The results are in good agreement with the available theoretical models.

  11. Residual Gas X-ray Beam Position Monitor Development for PETRA III

    SciTech Connect

    Ilinski, P.; Hahn, U.; Schulte-Schrepping, H.; Degenhardt, M.

    2007-01-19

    The development effort is driven by the need for a new type of x-ray beam position monitor (XBPM), which will detect the centre of gravity of the undulator beam. XBPMs based on the ionization of a residual gas are considered being the candidate for this future ''white'' undulator beam XBPMs. A number of residual gas XBPM prototypes for the PETRA III storage ring were developed and tested. Tests were performed at DESY and the ESRF, resolution of beam position up to 5 {mu}m is reported. The further development of the RGXBPMs will be focused on improvements of resolution, readout speed and reliability.

  12. Thermal gradient crystals as tuneable monochromator for high energy X-rays

    SciTech Connect

    Ruett, U.; Schulte-Schrepping, H.; Heuer, J.; Zimmermann, M. von

    2010-06-23

    At the high energy synchrotron radiation beamline BW5 at DORIS III at DESY a new monochromator providing broad energy bandwidth and high reflectivity is in use. On a small 10x10x5 mm{sup 3} silicon crystal scattering at the (311) reflection a thermal gradient is applied, which tunes the scattered energy bandwidth. The (311) reflection strongly suppresses the higher harmonics allowing the use of an image plate detector for crystallography. The monochromator can be used at photon energies above 60 keV.

  13. Neutron dosimetry with TL albedo dosemeters at high energy accelerators.

    PubMed

    Haninger, T; Fehrenbacher, G

    2007-01-01

    The GSF-Personal Monitoring Service uses the TLD albedo dosemeter as standard neutron personal dosemeter. Due to its low sensitivity for fast neutrons however, it is generally not recommended for workplaces at high-energy accelerators. Test measurements with the albedo dosemeter were performed at the accelerator laboratories of GSI in Darmstadt and DESY in Hamburg to reconsider this hypothesis. It revealed that the albedo dosemeter can also be used as personal dosemeter at these workplaces, because at all measurement locations a significant part of neutrons with lower energies could be found, which were produced by scattering at walls or the ground. PMID:17766258

  14. The OLYMPUS experiment

    NASA Astrophysics Data System (ADS)

    Milner, Richard G.; Olympus Collaboration

    2012-09-01

    OLYMPUS is an experiment mounted by an international collaboration at DESY, Hamburg, Germany to provide a ±1% measurement of the cross section ratio of positron-proton to electron-proton elastic scattering in the range 0.6 < Q2 < 2.2 (GeV/c)2. The goal is to provide a definitive experimental verification of the generally accepted explanation of the discrepancy between cross-section and recoil polarization techniques in determination of the form factor ratio GEp(Q2)/GMp(Q2).

  15. Higher Order Modes HOM___s in Coupled Cavities of the Flash Module ACC39

    SciTech Connect

    Shinton, I.R.R.; Jones, R.M.; Li, Z.; Zhang, P.; /Manchester U. /Cockcroft Inst. Accel. Sci. Tech. /DESY

    2012-09-14

    We analyse the higher order modes (HOM's) in the 3.9GHz bunch shaping cavities installed in the FLASH facility at DESY. A suite of finite element computer codes (including HFSS and ACE3P) and globalised scattering matrix calculations (GSM) are used to investigate the modes in these cavities. This study is primarily focused on the dipole component of the multiband expansion of the wakefield, with the emphasis being on the development of a HOM-based BPM system for ACC39. Coupled inter-cavity modes are simulated together with a limited band of trapped modes.

  16. Cryptotomography: reconstructing 3D Fourier intensities from randomly oriented single-shot diffraction patterns.

    PubMed

    Loh, N D; Bogan, M J; Elser, V; Barty, A; Boutet, S; Bajt, S; Hajdu, J; Ekeberg, T; Maia, F R N C; Schulz, J; Seibert, M M; Iwan, B; Timneanu, N; Marchesini, S; Schlichting, I; Shoeman, R L; Lomb, L; Frank, M; Liang, M; Chapman, H N

    2010-06-01

    We reconstructed the 3D Fourier intensity distribution of monodisperse prolate nanoparticles using single-shot 2D coherent diffraction patterns collected at DESY's FLASH facility when a bright, coherent, ultrafast x-ray pulse intercepted individual particles of random, unmeasured orientations. This first experimental demonstration of cryptotomography extended the expansion-maximization-compression framework to accommodate unmeasured fluctuations in photon fluence and loss of data due to saturation or background scatter. This work is an important step towards realizing single-shot diffraction imaging of single biomolecules.

  17. Current experiments in elementary particle physics

    SciTech Connect

    Wohl, C.G.; Armstrong, F.E., Oyanagi, Y.; Dodder, D.C.; Ryabov, Yu.G.; Frosch, R.; Olin, A.; Lehar, F.; Moskalev, A.N.; Barkov, B.P.

    1987-03-01

    This report contains summaries of 720 recent and current experiments in elementary particle physics (experiments that finished taking data before 1980 are excluded). Included are experiments at Brookhaven, CERN, CESR, DESY, Fermilab, Moscow Institute of Theoretical and Experimental Physics, Tokyo Institute of Nuclear Studies, KEK, LAMPF, Leningrad Nuclear Physics Institute, Saclay, Serpukhov, SIN, SLAC, and TRIUMF, and also experiments on proton decay. Instructions are given for searching online the computer database (maintained under the SLAC/SPIRES system) that contains the summaries. Properties of the fixed-target beams at most of the laboratories are summarized.

  18. Cryptotomography: reconstructing 3D Fourier intensities from randomly oriented single-shot diffraction patterns.

    PubMed

    Loh, N D; Bogan, M J; Elser, V; Barty, A; Boutet, S; Bajt, S; Hajdu, J; Ekeberg, T; Maia, F R N C; Schulz, J; Seibert, M M; Iwan, B; Timneanu, N; Marchesini, S; Schlichting, I; Shoeman, R L; Lomb, L; Frank, M; Liang, M; Chapman, H N

    2010-06-01

    We reconstructed the 3D Fourier intensity distribution of monodisperse prolate nanoparticles using single-shot 2D coherent diffraction patterns collected at DESY's FLASH facility when a bright, coherent, ultrafast x-ray pulse intercepted individual particles of random, unmeasured orientations. This first experimental demonstration of cryptotomography extended the expansion-maximization-compression framework to accommodate unmeasured fluctuations in photon fluence and loss of data due to saturation or background scatter. This work is an important step towards realizing single-shot diffraction imaging of single biomolecules. PMID:20867179

  19. Current experiments in elementary particle physics. Revision 1-85

    SciTech Connect

    Wohl, C.G.; Armstrong, F.E.; Rittenberg, A.; Trippe, T.G.; Yost, G.P.; Oyanagi, Y.; Dodder, D.C.; Grudtsin, S.N.; Ryabov, Yu.G.; Frosch, R.

    1985-01-01

    This report contains summaries of 551 approved experiments in elementary particle physics (experiments that finished taking data before 1 January 1980 are excluded). Included are experiments at Brookhaven, CERN, CESR, DESY, Fermilab, Moscow Institute of Theoretical and Experimental Physics, Tokyo Institute of Nuclear Studies, KEK, LAMPF, Leningrad Nuclear Physics Institute, Saclay, Serpukhov, SIN, SLAC, and TRIUMF, and also experiments on proton decay. Properties of the fixed-target beams at most of the laboratories are summarized. Instructions are given for searching online the computer database (maintained under the SLAC/SPIRES system) that contains the summaries.

  20. Jahr der Geowissenschaften

    NASA Astrophysics Data System (ADS)

    Wohnlich, Stefan

    2002-06-01

    Das System Erde ist Leitthema des "Jahres der Geowissenschaften", das von der Bundesministerin für Bildung und Forschung in den Vordergrund der Initiative "Wissenschaft im Dialog" für 2002 gestellt wurde. Es soll aufzeigen, dass wir in einer empfindlichen Umwelt leben, die auf die natürlichen Schwankungen, z. B. des Klimas, genauso empfindlich reagiert wie auf die rücksichtslose Nutzung der Erde durch den Menschen. Damit rückt auch das Thema Grundwasser als Teil des globalen Wasserkreislaufes in den Mittelpunkt der derzeitigen Öffentlichkeitsarbeit. Wenn wir uns die bisherige Resonanz auf das Jahr der Geowissenschaften anschauen, dann ist festzustellen, dass gerade die Bereitschaft aus den Medien zur Aufnahme von Geowissenschaftlichen Themen erstaunlich groß ist. Aus dem Bereich des Grund- und Trinkwassers snd vor allem in Universitätsstädten bereits größere Veranstaltungen durchgeführt worden oder stehen noch im Laufe des Jahres aus (Information unter: www.planeterde.de). Tatsächlich ist der Dialog von Wissenschaft und Praxis mit der Öffentlichkeit ein vorrangiges Ziel auch der Fachsektion Hydrogeologie. Nur allzu leicht tritt dieses Ziel im Alltagsbetrieb in den Hintergrund. Die deutschen Universitäten und Wissenschaftsorganisationen haben in die Öffentlichkeitsarbeit erst in den letzten Jahren verstärkt Ideen und Mittel investiert. Dabei ist gerade das Verständnis für die Chancen und Risiken der Forschung und damit auch der Hochschullehre in der breiten Öffentlichkeit eine unabdingbare Voraussetzung. Aber nicht nur die wissenschaftliche Organisationen sind auf die Akzeptanz einer breiten Öffentlichkeit für wissenschaftlich fundiertes Arbeiten angewiesen, sondern auch die von Fachwissen geprägten Aufgaben im Umfeld des Grundwassers brauchen das Verständnis für ihre oft aufwändigen Untersuchungen. Ich habe in den letzten Monaten mehrere Vorträge an verschiedenen Gymnasien zum Thema "Ressource Grundwasser" gehalten. Die Resonanz war f

  1. Droplet dynamics and ionization mechanisms in desorption electrospray ionization mass spectrometry.

    PubMed

    Venter, Andre; Sojka, Paul E; Cooks, R Graham

    2006-12-15

    A droplet pickup and other mechanisms have been suggested for the ionization of biomolecules like peptides and proteins by desorption electrospray ionization. To verify this hypothesis phase Doppler particle analysis was used to study the sizes and velocities of droplets involved in DESI. It was found that impacting droplets typically have velocities of 120 m/s and average diameters of 2-4 microm. Small differences in sprayer construction influence the operating conditions at which droplets of these dimensions are produced. Under these conditions, the kinetic energy per impacting water molecule is less than 0.6 meV and sputtering through momentum transfer during collisions or ionization by other electronic processes is unlikely. Droplets arrive at the surface with velocities well below the speed of sound in common materials, thereby excluding the possibility of ionization by shockwave formation. Some droplets appear to roll along the surface, increasing contact time and presumably the amount of material that is taken up into droplets during conditions typical of the DESI experiment.

  2. Any Light Particle Search (ALPS)

    NASA Astrophysics Data System (ADS)

    Spector, Aaron; Any Light Particle Search (ALPS) Collaboration

    2016-03-01

    High power laser fields enabled by technologies developed for ground-based gravitational-wave observatories open up new opportunities for fundamental physics studies. One of these options is the search for axions and axion-like particles in a pure laboratory experiment. The axion is a solution to the strong CP-problem and a potential dark matter candidate. The axion has also been proposed as an additional channel to cool stars as well as a potential explanation for the TeV transparency problem. The German-US ALPS collaboration is setting up a light-shining-through-walls (LSW) experiment at DESY. LSW experiments are based on the simple idea that a high power laser field traversing a static magnetic field will transform partly into a relativistic axion field. This axion field will travel through an opaque wall into a second static magnetic field region where it turns partly back into an electromagnetic wave field with the same frequency as the laser. The ALPS collaboration is working towards a large scale LSW experiment at DESY in Hamburg, Germany. I will report on the status of the ALPS experiment. This work is supported by the Deutsche Forschungsgemeinschaft, PRISMA, the Helmholtz Association, the National Science Foundation and the Heising-Simons Foundation.

  3. A new extraction system for the Linac4 H{sup -}ion source

    SciTech Connect

    Midttun, O.; Kalvas, T.; Kronberger, M.; Lettry, J.; Pereira, H.; Schmitzer, C.; Scrivens, R.

    2012-02-15

    As part of the CERN accelerator complex upgrade, a new linear accelerator for H{sup -} (Linac4) is under construction. The ion source design is based on the non-caesiated DESY RF-driven ion source, with the goal of producing an H{sup -} beam of 80 mA beam current, 45 keV beam energy, 0.4 ms pulse length, and 2 Hz repetition rate. The source has been successfully commissioned for an extraction voltage of 35 kV, corresponding to the one used at DESY. Increasing the extraction voltage to 45 kV has resulted in frequent high voltage breakdowns in the extraction region caused by evaporating material from the electron dump, triggering a new design of the extraction and electron dumping system. Results of the ion source commissioning at 35 kV are presented as well as simulations of a new pulsed extraction system for beam extraction at 45 kV.

  4. FIONDA (Filtering Images of Niobium Disks Application): Filter application for Eddy Current Scanner data analysis

    SciTech Connect

    Boffo, C.; Bauer, P.; /Fermilab

    2005-05-01

    As part of the material QC process, each Niobium disk from which a superconducting RF cavity is built must undergo an eddy current scan [1]. This process allows to discover embedded defects in the material that are not visible to the naked eye because too small or under the surface. Moreover, during the production process of SC cavities the outer layer of Nb is removed via chemical or electro-chemical etching, thus it is important to evaluate the quality of the subsurface layer (in the order of 100nm) where superconductivity will happen. The reference eddy current scanning machine is operated at DESY; at Fermilab we are using the SNS eddy current scanner on loan, courtesy of SNS. In the past year, several upgrades were implemented aiming at raising the SNS machine performance to that of the DESY reference machine [2]. As part of this effort an algorithm that enables the filtering of the results of the scans and thus improves the resolution of the process was developed. The description of the algorithm and of the software used to filter the scan results is presented in this note.

  5. An Automated Platform for High-Resolution Tissue Imaging Using Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Lanekoff, Ingela T.; Heath, Brandi S.; Liyu, Andrey V.; Thomas, Mathew; Carson, James P.; Laskin, Julia

    2012-10-02

    An automated platform has been developed for acquisition and visualization of mass spectrometry imaging (MSI) data using nanospray desorption electrospray ionization (nano-DESI). The new system enables robust operation of the nano-DESI imaging source over many hours. This is achieved by controlling the distance between the sample and the probe by mounting the sample holder onto an automated XYZ stage and defining the tilt of the sample plane. This approach is useful for imaging of relatively flat samples such as thin tissue sections. Custom software called MSI QuickView was developed for visualization of large data sets generated in imaging experiments. MSI QuickView enables fast visualization of the imaging data during data acquisition and detailed processing after the entire image is acquired. The performance of the system is demonstrated by imaging rat brain tissue sections. High resolution mass analysis combined with MS/MS experiments enabled identification of lipids and metabolites in the tissue section. In addition, high dynamic range and sensitivity of the technique allowed us to generate ion images of low-abundance isobaric lipids. High-spatial resolution image acquired over a small region of the tissue section revealed the spatial distribution of an abundant brain metabolite, creatine, in the white and gray matter that is consistent with the literature data obtained using magnetic resonance spectroscopy.

  6. Nucleolin-aptamer therapy in retinoblastoma: molecular changes and mass spectrometry-based imaging.

    PubMed

    Subramanian, Nithya; Srimany, Amitava; Kanwar, Jagat R; Kanwar, Rupinder K; Akilandeswari, Balachandran; Rishi, Pukhraj; Khetan, Vikas; Vasudevan, Madavan; Pradeep, Thalappil; Krishnakumar, Subramanian

    2016-01-01

    Retinoblastoma (RB) is an intraocular childhood tumor which, if left untreated, leads to blindness and mortality. Nucleolin (NCL) protein which is differentially expressed on the tumor cell surface, binds ligands and regulates carcinogenesis and angiogenesis. We found that NCL is over expressed in RB tumor tissues and cell lines compared to normal retina. We studied the effect of nucleolin-aptamer (NCL-APT) to reduce proliferation in RB tumor cells. Aptamer treatment on the RB cell lines (Y79 and WERI-Rb1) led to significant inhibition of cell proliferation. Locked nucleic acid (LNA) modified NCL-APT administered subcutaneously (s.c.) near tumor or intraperitoneally (i.p.) in Y79 xenografted nude mice resulted in 26 and 65% of tumor growth inhibition, respectively. Downregulation of inhibitor of apoptosis proteins, tumor miRNA-18a, altered serum cytokines, and serum miRNA-18a levels were observed upon NCL-APT treatment. Desorption electrospray ionization mass spectrometry (DESI MS)-based imaging of cell lines and tumor tissues revealed changes in phosphatidylcholines levels upon treatment. Thus, our study provides proof of concept illustrating NCL-APT-based targeted therapeutic strategy and use of DESI MS-based lipid imaging in monitoring therapeutic responses in RB. PMID:27574784

  7. Test Sample for the Spatially Resolved Quantification of Illicit Drugs on Fingerprints Using Imaging Mass Spectrometry.

    PubMed

    Muramoto, Shin; Forbes, Thomas P; van Asten, Arian C; Gillen, Greg

    2015-01-01

    A novel test sample for the spatially resolved quantification of illicit drugs on the surface of a fingerprint using time-of-flight secondary ion mass spectrometry (ToF-SIMS) and desorption electrospray ionization mass spectrometry (DESI-MS) was demonstrated. Calibration curves relating the signal intensity to the amount of drug deposited on the surface were generated from inkjet-printed arrays of cocaine, methamphetamine, and heroin with a deposited-mass ranging nominally from 10 pg to 50 ng per spot. These curves were used to construct concentration maps that visualized the spatial distribution of the drugs on top of a fingerprint, as well as being able to quantify the amount of drugs in a given area within the map. For the drugs on the fingerprint on silicon, ToF-SIMS showed great success, as it was able to generate concentration maps of all three drugs. On the fingerprint on paper, only the concentration map of cocaine could be constructed using ToF-SIMS and DESI-MS, as the signals of methamphetamine and heroin were completely suppressed by matrix and substrate effects. Spatially resolved quantification of illicit drugs using imaging mass spectrometry is possible, but the choice of substrates could significantly affect the results.

  8. Rapid detection of cocaine, benzoylecgonine and methylecgonine in fingerprints using surface mass spectrometry.

    PubMed

    Bailey, Melanie J; Bradshaw, Robert; Francese, Simona; Salter, Tara L; Costa, Catia; Ismail, Mahado; P Webb, Roger; Bosman, Ingrid; Wolff, Kim; de Puit, Marcel

    2015-09-21

    Latent fingerprints provide a potential route to the secure, high throughput and non-invasive detection of drugs of abuse. In this study we show for the first time that the excreted metabolites of drugs of abuse can be detected in fingerprints using ambient mass spectrometry. Fingerprints and oral fluid were taken from patients attending a drug and alcohol treatment service. Gas chromatography mass spectrometry (GC-MS) was used to test the oral fluid of patients for the presence of cocaine and benzoylecgonine. The corresponding fingerprints were analysed using Desorption Electrospray Ionization (DESI) which operates under ambient conditions and Ion Mobility Tandem Mass Spectrometry Matrix Assisted Laser Desorption Ionization (MALDI-IMS-MS/MS) and Secondary Ion Mass Spectrometry (SIMS). The detection of cocaine, benzoylecgonine (BZE) and methylecgonine (EME) in latent fingerprints using both DESI and MALDI showed good correlation with oral fluid testing. The sensitivity of SIMS was found to be insufficient for this application. These results provide exciting opportunities for the use of fingerprints as a new sampling medium for secure, non-invasive drug detection. The mass spectrometry techniques used here offer a high level of selectivity and consume only a small area of a single fingerprint, allowing repeat and high throughput analyses of a single sample.

  9. Production of quasi ellipsoidal laser pulses for next generation high brightness photoinjectors

    NASA Astrophysics Data System (ADS)

    Rublack, T.; Good, J.; Khojoyan, M.; Krasilnikov, M.; Stephan, F.; Hartl, I.; Schreiber, S.; Andrianov, A.; Gacheva, E.; Khazanov, E.; Mironov, S.; Potemkin, A.; Zelenogorskii, V. V.; Syresin, E.

    2016-09-01

    The use of high brightness electron beams in Free Electron Laser (FEL) applications is of increasing importance. One of the most promising methods to generate such beams is the usage of shaped photocathode laser pulses. It has already demonstrated that temporal and transverse flat-top laser pulses can produce very low emittance beams [1]. Nevertheless, based on beam simulations further improvements can be achieved using quasi-ellipsoidal laser pulses, e.g. 30% reduction in transverse projected emittance at 1 nC bunch charge. In a collaboration between DESY, the Institute of Applied Physics of the Russian Academy of Science (IAP RAS) in Nizhny Novgorod and the Joint Institute of Nuclear Research (JINR) in Dubna such a laser system capable of producing trains of laser pulses with a quasi-ellipsoidal distribution, has been developed. The prototype of the system was installed at the Photo Injector Test facility at DESY in Zeuthen (PITZ) and is currently in the commissioning phase. In the following, the laser system will be introduced, the procedure of pulse shaping will be described and the last experimental results will be shown.

  10. Concept, implementation and commissioning of the automation system for the accelerator module test facility AMTF

    SciTech Connect

    Böckmann, Torsten A.; Korth, Olaf; Clausen, Matthias; Schoeneburg, Bernd

    2014-01-29

    The European XFEL project launched on June 5, 2007 will require about 103 accelerator modules as a main part of the XFEL linear accelerator. All superconducting components constituting the accelerator module like cavities and magnets have to be tested before the assembly. For the tests of the individual cavities and the complete modules an XFEL Accelerator Module Test Facility (AMTF) has been erected at DESY. The process control system EPICS (Experimental Physics and Industrial Control System) is used to control and operate the cryogenic plant and all its subcomponents. A complementary component of EPICS is the Open Source software suit CSS (Control System Studio). CSS is an integrated engineering, maintenance and operating tool for EPICS. CSS enables local and remote operating and monitoring of the complete system and thus represents the human machine interface. More than 250 PROFIBUS nodes work at the accelerator module test facility. DESY installed an extensive diagnostic and condition monitoring system. With these diagnostic tools it is possible to examine the correct installation and configuration of all PROFIBUS nodes in real time. The condition monitoring system based on FDT/DTM technology shows the state of the PROFIBUS devices at a glance. This information can be used for preventive maintenance which is mandatory for continuous operation of the AMTF facility. The poster will describe all steps form engineering to implementation and commissioning.

  11. Support of experimental high energy physics research at the University of South Carolina. Final technical report, February 1992--February 1996

    SciTech Connect

    Purohit, M.V.; Rosenfeld, C.; Wilson, J.R.

    1996-12-31

    This brief report summarizes the activities of the University of South Carolina`s high energy physics group during the three-year period. The activities of the group began in 1980 under a predecessor grant from DOE, and continue today under a successor grant. The retirements of one grant in favor of another were for reasons of administrative convenience or necessity. The characterization of the report as final is not reflective of the group`s projects, which by-and-large continue with support from the successor grant. The experiments with which the USC group had some significant relationship during the period of this grant were ARGUS (at DESY`s DORIS e{sup +}e{sup {minus}} collider), AMY (at KEK`s TRISTAN e{sup +}e{sup {minus}} collider). Fermilab E687, Fermilab E789, Fermilab E791, Fermilab E803, and Fermilab E872. The authors give a brief synopsis of USC`s participation in each of these projects and a few projects of lesser magnitude as well.

  12. Electron-beam manipulation techniques in the SINBAD Linac for external injection in plasma wake-field acceleration

    NASA Astrophysics Data System (ADS)

    Marchetti, B.; Assmann, R.; Behrens, C.; Brinkmann, R.; Dorda, U.; Floettmann, K.; Hartl, I.; Huening, M.; Nie, Y.; Schlarb, H.; Zhu, J.

    2016-09-01

    The SINBAD facility (Short and INnovative Bunches and Accelerators at Desy) is foreseen to host various experiments in the field of production of ultra-short electron bunches and novel high gradient acceleration techniques. Besides studying novel acceleration techniques aiming to produce high brightness short electron bunches, the ARD group at DESY is working on the design of a conventional RF accelerator that will allow the production of low charge (0.5 pC - few pC) ultra-short electron bunches (having full width half maximum, FWHM, length ≤ 1 fs - few fs). The setup will allow the direct experimental comparison of the performance achievable by using different compression techniques (velocity bunching, magnetic compression, hybrid compression schemes). At a later stage the SINBAD linac will be used to inject such electron bunches into a laser driven Plasma Wakefield Accelerator, which imposes strong requirements on parameters such as the arrival time jitter and the pointing stability of the beam. In this paper we review the compression techniques that are foreseen at SINBAD and we underline the differences in terms of peak current, beam quality and arrival time stability.

  13. Whole Reproductive System Non-Negative Matrix Factorization Mass Spectrometry Imaging of an Early-Stage Ovarian Cancer Mouse Model

    PubMed Central

    Kim, Jaeyeon; Bennett, Rachel V.; Parry, R. Mitchell; Gaul, David A.; Wang, May D.; Matzuk, Martin M.; Fernández, Facundo M.

    2016-01-01

    High-grade serous carcinoma (HGSC) is the most common and deadliest form of ovarian cancer. Yet it is largely asymptomatic in its initial stages. Studying the origin and early progression of this disease is thus critical in identifying markers for early detection and screening purposes. Tissue-based mass spectrometry imaging (MSI) can be employed as an unbiased way of examining localized metabolic changes between healthy and cancerous tissue directly, at the onset of disease. In this study, we describe MSI results from Dicer-Pten double-knockout (DKO) mice, a mouse model faithfully reproducing the clinical nature of human HGSC. By using non-negative matrix factorization (NMF) for the unsupervised analysis of desorption electrospray ionization (DESI) datasets, tissue regions are segregated based on spectral components in an unbiased manner, with alterations related to HGSC highlighted. Results obtained by combining NMF with DESI-MSI revealed several metabolic species elevated in the tumor tissue and/or surrounding blood-filled cyst including ceramides, sphingomyelins, bilirubin, cholesterol sulfate, and various lysophospholipids. Multiple metabolites identified within the imaging study were also detected at altered levels within serum in a previous metabolomic study of the same mouse model. As an example workflow, features identified in this study were used to build an oPLS-DA model capable of discriminating between DKO mice with early-stage tumors and controls with up to 88% accuracy. PMID:27159635

  14. Rapid Detection of Necrosis in Breast Cancer with Desorption Electrospray Ionization Mass Spectrometry

    PubMed Central

    Tata, Alessandra; Woolman, Michael; Ventura, Manuela; Bernards, Nicholas; Ganguly, Milan; Gribble, Adam; Shrestha, Bindesh; Bluemke, Emma; Ginsberg, Howard J.; Vitkin, Alex; Zheng, Jinzi; Zarrine-Afsar, Arash

    2016-01-01

    Identification of necrosis in tumors is of prognostic value in treatment planning, as necrosis is associated with aggressive forms of cancer and unfavourable outcomes. To facilitate rapid detection of necrosis with Mass Spectrometry (MS), we report the lipid MS profile of necrotic breast cancer with Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) imaging validated with statistical analysis and correlating pathology. This MS profile is characterized by (1) the presence of the ion of m/z 572.48 [Cer(d34:1) + Cl]− which is a ceramide absent from the viable cancer subregions; (2) the absence of the ion of m/z 391.25 which is present in small abundance only in viable cancer subregions; and (3) a slight increase in the relative intensity of known breast cancer biomarker ions of m/z 281.25 [FA(18:1)-H]− and 303.23 [FA(20:4)-H]−. Necrosis is accompanied by alterations in the tissue optical depolarization rate, allowing tissue polarimetry to guide DESI-MS analysis for rapid MS profiling or targeted MS imaging. This workflow, in combination with the MS profile of necrosis, may permit rapid characterization of necrotic tumors from tissue slices. Further, necrosis-specific biomarker ions are detected in seconds with single MS scans of necrotic tumor tissue smears, which further accelerates the identification workflow by avoiding tissue sectioning and slide preparation. PMID:27734938

  15. A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea.

    PubMed

    Bajaj, Deepak; Upadhyaya, Hari D; Khan, Yusuf; Das, Shouvik; Badoni, Saurabh; Shree, Tanima; Kumar, Vinod; Tripathi, Shailesh; Gowda, C L L; Singh, Sube; Sharma, Shivali; Tyagi, Akhilesh K; Chattopdhyay, Debasis; Parida, Swarup K

    2015-01-01

    High experimental validation/genotyping success rate (94-96%) and intra-specific polymorphic potential (82-96%) of 1536 SNP and 472 SSR markers showing in silico polymorphism between desi ICC 4958 and kabuli ICC 12968 chickpea was obtained in a 190 mapping population (ICC 4958 × ICC 12968) and 92 diverse desi and kabuli genotypes. A high-density 2001 marker-based intra-specific genetic linkage map comprising of eight LGs constructed is comparatively much saturated (mean map-density: 0.94 cM) in contrast to existing intra-specific genetic maps in chickpea. Fifteen robust QTLs (PVE: 8.8-25.8% with LOD: 7.0-13.8) associated with pod and seed number/plant (PN and SN) and 100 seed weight (SW) were identified and mapped on 10 major genomic regions of eight LGs. One of 126.8 kb major genomic region harbouring a strong SW-associated robust QTL (Caq'SW1.1: 169.1-171.3 cM) has been delineated by integrating high-resolution QTL mapping with comprehensive marker-based comparative genome mapping and differential expression profiling. This identified one potential regulatory SNP (G/A) in the cis-acting element of candidate ERF (ethylene responsive factor) TF (transcription factor) gene governing seed weight in chickpea. The functionally relevant molecular tags identified have potential to be utilized for marker-assisted genetic improvement of chickpea.

  16. Differentiation of prostate cancer from normal tissue in radical prostatectomy specimens by desorption electrospray ionization and touch spray ionization mass spectrometry.

    PubMed

    Kerian, K S; Jarmusch, A K; Pirro, V; Koch, M O; Masterson, T A; Cheng, L; Cooks, R G

    2015-02-21

    Radical prostatectomy is a common treatment option for prostate cancer before it has spread beyond the prostate. Examination for surgical margins is performed post-operatively with positive margins reported to occur in 6.5-32% of cases. Rapid identification of cancerous tissue during surgery could improve surgical resection. Desorption electrospray ionization (DESI) is an ambient ionization method which produces mass spectra dominated by lipid signals directly from prostate tissue. With the use of multivariate statistics, these mass spectra can be used to differentiate cancerous and normal tissue. The method was applied to 100 samples from 12 human patients to create a training set of MS data. The quality of the discrimination achieved was evaluated using principal component analysis - linear discriminant analysis (PCA-LDA) and confirmed by histopathology. Cross validation (PCA-LDA) showed >95% accuracy. An even faster and more convenient method, touch spray (TS) mass spectrometry, not previously tested to differentiate diseased tissue, was also evaluated by building a similar MS data base characteristic of tumor and normal tissue. An independent set of 70 non-targeted biopsies from six patients was then used to record lipid profile data resulting in 110 data points for an evaluation dataset for TS-MS. This method gave prediction success rates measured against histopathology of 93%. These results suggest that DESI and TS could be useful in differentiating tumor and normal prostate tissue at surgical margins and that these methods should be evaluated intra-operatively.

  17. XMS: Cross-Platform Normalization Method for Multimodal Mass Spectrometric Tissue Profiling

    NASA Astrophysics Data System (ADS)

    Golf, Ottmar; Muirhead, Laura J.; Speller, Abigail; Balog, Júlia; Abbassi-Ghadi, Nima; Kumar, Sacheen; Mróz, Anna; Veselkov, Kirill; Takáts, Zoltán

    2015-01-01

    Here we present a proof of concept cross-platform normalization approach to convert raw mass spectra acquired by distinct desorption ionization methods and/or instrumental setups to cross-platform normalized analyte profiles. The initial step of the workflow is database driven peak annotation followed by summarization of peak intensities of different ions from the same molecule. The resulting compound-intensity spectra are adjusted to a method-independent intensity scale by using predetermined, compound-specific normalization factors. The method is based on the assumption that distinct MS-based platforms capture a similar set of chemical species in a biological sample, though these species may exhibit platform-specific molecular ion intensity distribution patterns. The method was validated on two sample sets of (1) porcine tissue analyzed by laser desorption ionization (LDI), desorption electrospray ionization (DESI), and rapid evaporative ionization mass spectrometric (REIMS) in combination with Fourier transformation-based mass spectrometry; and (2) healthy/cancerous colorectal tissue analyzed by DESI and REIMS with the latter being combined with time-of-flight mass spectrometry. We demonstrate the capacity of our method to reduce MS-platform specific variation resulting in (1) high inter-platform concordance coefficients of analyte intensities; (2) clear principal component based clustering of analyte profiles according to histological tissue types, irrespective of the used desorption ionization technique or mass spectrometer; and (3) accurate "blind" classification of histologic tissue types using cross-platform normalized analyte profiles.

  18. Using ambient ozone for assignment of double bond position in unsaturated lipids.

    PubMed

    Ellis, Shane R; Hughes, Jessica R; Mitchell, Todd W; in het Panhuis, Marc; Blanksby, Stephen J

    2012-03-01

    Unsaturated lipids deposited onto a range of materials are observed to react with the low concentrations of ozone present in normal laboratory air. Parent lipids and ozonolysis cleavage products are both detected directly from surfaces by desorption electrospray ionisation mass spectrometry (DESI-MS) with the resulting mass spectra providing clear evidence of the double bond position within these molecules. This serendipitous process has been coupled with thin-layer chromatography (TLC) to provide a simple but powerful approach for the detailed structural elucidation of lipids present in complex biological extracts. Lipid extracts from human lens were deposited onto normal phase TLC plates and then developed to separate components according to lipid class. Exposure of the developed plates to laboratory air for ca. 1 h prior to DESI-MS analysis gave rise to ozonolysis products allowing for the unambiguous identification of double bond positions in even low abundant, unsaturated lipids. In particular, the co-localization of intact unsaturated lactosylceramides (LacCer) with products from their oxidative cleavage provide the first evidence for the presence of three isomeric LacCer (d18:0/24:1) species in the ocular lens lipidome, i.e., variants with double bonds at the n-9, n-7 and n-5 positions.

  19. Transcriptome landscape of perennial wild Cicer microphyllum uncovers functionally relevant molecular tags regulating agronomic traits in chickpea

    PubMed Central

    Srivastava, Rishi; Bajaj, Deepak; Malik, Ayushi; Singh, Mohar; Parida, Swarup K.

    2016-01-01

    The RNA-sequencing followed by de-novo transcriptome assembly identified 11621 genes differentially xpressed in roots vs. shoots of a wild perennial Cicer microphyllum. Comparative analysis of transcriptomes between microphyllum and cultivated desi cv. ICC4958 detected 12772 including 3242 root- and 1639 shoot-specific microphyllum genes with 85% expression validation success rate. Transcriptional reprogramming of microphyllum root-specific genes implicates their possible role in regulating differential natural adaptive characteristics between wild and cultivated chickpea. The transcript-derived 5698 including 282 in-silico polymorphic SSR and 127038 SNP markers annotated at a genome-wide scale exhibited high amplification and polymorphic potential among cultivated (desi and kabuli) and wild accessions suggesting their utility in chickpea genomics-assisted breeding applications. The functional significance of markers was assessed based on their localization in non-synonymous coding and regulatory regions of microphyllum root-specific genes differentially expressed predominantly in ICC 4958 roots under drought stress. A high-density 490 genic SSR- and SNP markers-anchored genetic linkage map identified six major QTLs regulating drought tolerance-related traits, yield per plant and harvest-index in chickpea. The integration of high-resolution QTL mapping with comparative transcriptome profiling delineated five microphyllum root-specific genes with non-synonymous and regulatory SNPs governing drought-responsive yield traits. Multiple potential key regulators and functionally relevant molecular tags delineated can drive translational research and drought tolerance-mediated chickpea genetic enhancement. PMID:27680662

  20. Nucleolin-aptamer therapy in retinoblastoma: molecular changes and mass spectrometry–based imaging

    PubMed Central

    Subramanian, Nithya; Srimany, Amitava; Kanwar, Jagat R; Kanwar, Rupinder K; Akilandeswari, Balachandran; Rishi, Pukhraj; Khetan, Vikas; Vasudevan, Madavan; Pradeep, Thalappil; Krishnakumar, Subramanian

    2016-01-01

    Retinoblastoma (RB) is an intraocular childhood tumor which, if left untreated, leads to blindness and mortality. Nucleolin (NCL) protein which is differentially expressed on the tumor cell surface, binds ligands and regulates carcinogenesis and angiogenesis. We found that NCL is over expressed in RB tumor tissues and cell lines compared to normal retina. We studied the effect of nucleolin-aptamer (NCL-APT) to reduce proliferation in RB tumor cells. Aptamer treatment on the RB cell lines (Y79 and WERI-Rb1) led to significant inhibition of cell proliferation. Locked nucleic acid (LNA) modified NCL-APT administered subcutaneously (s.c.) near tumor or intraperitoneally (i.p.) in Y79 xenografted nude mice resulted in 26 and 65% of tumor growth inhibition, respectively. Downregulation of inhibitor of apoptosis proteins, tumor miRNA-18a, altered serum cytokines, and serum miRNA-18a levels were observed upon NCL-APT treatment. Desorption electrospray ionization mass spectrometry (DESI MS)-based imaging of cell lines and tumor tissues revealed changes in phosphatidylcholines levels upon treatment. Thus, our study provides proof of concept illustrating NCL-APT-based targeted therapeutic strategy and use of DESI MS-based lipid imaging in monitoring therapeutic responses in RB. PMID:27574784

  1. String formulation of space charge forces in a deflecting bunch

    NASA Astrophysics Data System (ADS)

    Talman, Richard

    2004-10-01

    The force between two moving point charges, because of its inverse square law singularity, cannot be applied directly in the numerical simulation of bunch dynamics; radiative effects make this especially true for short bunches being deflected by magnets. This paper describes a formalism circumventing this restriction in which the basic ingredient is the total force on a point charge comoving with a longitudinally aligned, uniformly charged string. Bunch evolution can then be treated using direct particle-to-particle, intrabeam scattering, with no need for an intermediate, particle-in-cell, step. Electric and magnetic fields do not appear individually in the theory. Since the basic formulas are both exact (in paraxial approximation) and fully relativistic, they are applicable to beams of all particle types and all energies. But the theory is expected to be especially useful for calculating the emittance growth of the ultrashort electron bunches of current interest for energy recovery linacs and free-electron lasers. The theory subsumes coherent synchrotron radiation and centrifugal space charge force. Renormalized, on-axis, longitudinal field components are in excellent agreement with values from Saldin et al. [DESY Report No. DESY-TESLA-FEL-96-14, 1995;

    Nucl. Instrum. Methods Phys. Res., Sect. ANIMAER0168-9002 417, 158 (1998).10.1016/S0168-9002(98)00623-8

  2. Desorption electrospray ionization-mass spectrometric analysis of low vapor pressure chemical particulates collected from a surface.

    PubMed

    Ewing, K J; Gibson, D; Sanghera, J; Miklos, F

    2015-01-01

    The collection of a low vapor pressure chemical simulant triethyl phosphate sorbed onto silica gel (TEP/SG) from a surface with subsequent analysis of the TEP/SG particulates using desorption electrospray ionization-mass spectrometry (DESI-MS) is described. Collection of TEP/SG particulates on a surface was accomplished using a sticky screen sampler composed of a stainless steel screen coated with partially polymerized polydimethylsiloxane (PDMS). DESI-MS analysis of TEP/SG particulates containing different percentages of TEP sorbed onto silica gel enabled the generation of response curves for the TEP ions m/z 155 and m/z 127. Using the response curves the calculation of the mass of TEP in a 25 wt% sample of TEP/SG was calculated, results show that the calculated mass of TEP was 14% different from the actual mass of TEP in the sample using the m/z 127 TEP ion response curve. Detection limits for the TEP vapor and TEP/SG particulates were calculated to be 4 μg and 6 particles, respectively.

  3. High-Speed Tandem Mass Spectrometric in Situ Imaging by Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Lanekoff, Ingela T.; Burnum-Johnson, Kristin E.; Thomas, Mathew; Short, Joshua TL; Carson, James P.; Cha, Jeeyeon; Dey, Sudhansu K.; Yang, Pengxiang; Prieto Conaway, Maria C.; Laskin, Julia

    2013-10-15

    Nanospray desorption electrospray ionization (nano-DESI) combined with tandem mass spectrometry (MS/MS), high-resolution mass analysis (m/m=17,500 at m/z 200), and rapid spectral acquisition enabled simultaneous imaging and identification of more than 300 molecules from 92 selected m/z windows (± 1 Da) with a spatial resolution of better than 150 um. Uterine sections of implantation sites on day 6 of pregnancy were analyzed in the ambient environment without any sample pre-treatment. MS/MS imaging was performed by scanning the sample under the nano-DESI probe at 10 um/s while acquiring higher-energy collision-induced dissociation (HCD) spectra for a targeted inclusion list of 92 m/z values at a rate of ~6.3 spectra/s. Molecular ions and their corresponding fragments, separated using high-resolution mass analysis, were assigned based on accurate mass measurement. Using this approach, we were able to identify and image both abundant and low-abundance isobaric species within each m/z window. MS/MS analysis enabled efficient separation and identification of isobaric sodium and potassium adducts of phospholipids. Furthermore, we identified several metabolites associated with early pregnancy and obtained the first 2D images of these molecules.

  4. Online Monitoring of Methanol Electro-Oxidation Reactions by Ambient Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Cheng, Si; Wu, Qiuhua; Dewald, Howard D.; Chen, Hao

    2016-08-01

    Online detection of methanol electro-oxidation reaction products [e.g., formaldehyde (HCHO)] by mass spectrometry (MS) is challenging, owing to the high salt content and extreme pH of the electrolyte solution as well as the difficulty in ionizing the reaction products. Herein we present an online ambient mass spectrometric approach for analyzing HCHO generated from methanol electro-oxidation, taking the advantage of high salt tolerance of desorption electrospray ionization mass spectrometry (DESI-MS). It was found that HCHO can be detected as PhNHNH+=CH2 (m/z 121) by DESI after online derivatization with PhNHNH2. With this approach, the analysis of HCHO from methanol electro-oxidation by MS was carried out not only in acidic condition but also in alkaline media for the first time. Efficiencies of different electrodes for methanol oxidation at different pHs were also evaluated. Our results show that Au electrode produces more HCHO than Pt-based electrodes at alkaline pH, while the latter have higher yields at acidic solution. The presented methodology would be of great value for elucidating fuel cell reaction mechanisms and for screening ideal fuel cell electrode materials.

  5. Effects of Tailored Surface Chemistry on Desorption Electrospray Ionization Mass Spectrometry: a Surface-Analytical Study by XPS and AFM

    NASA Astrophysics Data System (ADS)

    Penna, Andrea; Careri, Maria; Spencer, Nicholas D.; Rossi, Antonella

    2015-08-01

    Since it was proposed for the first time, desorption electrospray ionization-mass spectrometry (DESI-MS) has been evaluated for applicability in numerous areas. Elucidations of the ionization mechanisms and the subsequent formation of isolated gas-phase ions have been proposed so far. In this context, the role of both surface and pneumatic effects on ion-formation yield has recently been investigated. Nevertheless, the effect of the surface chemistry has not yet been completely understood. Functionalized glass surfaces have been prepared, in order to tailor surface performance for ion formation. Three substrates were functionalized by depositing three different silanes [3-mercaptopropyltriethoxysilane (MTES), octyltriethoxysilane (OTES), and 1H,1H,2H,2H-perfluorooctyltriethoxy-silane (FOTES)] from toluene solution onto standard glass slides. Surface characterization was carried out by contact-angle measurements, tapping-mode atomic force microscopy, and X-ray photoelectron spectroscopy. Morphologically homogeneous and thickness-controlled films in the nm range were obtained, with surface free energies lying between 15 and 70 mJ/m2. These results are discussed, together with those of DESI-MS on low-molecular-weight compounds such as melamine, tetracycline, and lincomycin, also taking into account the effects of the sprayer potential and its correlation with surface wettability. The results demonstrate that ion-formation efficiency is affected by surface wettability, and this was demonstrated operating above and below the onset of the electrospray.

  6. Rapid detection of cocaine, benzoylecgonine and methylecgonine in fingerprints using surface mass spectrometry.

    PubMed

    Bailey, Melanie J; Bradshaw, Robert; Francese, Simona; Salter, Tara L; Costa, Catia; Ismail, Mahado; P Webb, Roger; Bosman, Ingrid; Wolff, Kim; de Puit, Marcel

    2015-09-21

    Latent fingerprints provide a potential route to the secure, high throughput and non-invasive detection of drugs of abuse. In this study we show for the first time that the excreted metabolites of drugs of abuse can be detected in fingerprints using ambient mass spectrometry. Fingerprints and oral fluid were taken from patients attending a drug and alcohol treatment service. Gas chromatography mass spectrometry (GC-MS) was used to test the oral fluid of patients for the presence of cocaine and benzoylecgonine. The corresponding fingerprints were analysed using Desorption Electrospray Ionization (DESI) which operates under ambient conditions and Ion Mobility Tandem Mass Spectrometry Matrix Assisted Laser Desorption Ionization (MALDI-IMS-MS/MS) and Secondary Ion Mass Spectrometry (SIMS). The detection of cocaine, benzoylecgonine (BZE) and methylecgonine (EME) in latent fingerprints using both DESI and MALDI showed good correlation with oral fluid testing. The sensitivity of SIMS was found to be insufficient for this application. These results provide exciting opportunities for the use of fingerprints as a new sampling medium for secure, non-invasive drug detection. The mass spectrometry techniques used here offer a high level of selectivity and consume only a small area of a single fingerprint, allowing repeat and high throughput analyses of a single sample. PMID:25977942

  7. Unexpected Analyte Oxidation during Desorption Electrospray Ionization - Mass Spectrometry

    SciTech Connect

    Pasilis, Sofie P; Kertesz, Vilmos; Van Berkel, Gary J

    2008-01-01

    During the analysis of surface spotted analytes using desorption electrospray ionization mass spectrometry (DESI-MS), abundant ions are sometimes observed that appear to be the result of oxygen addition reactions. In this investigation, the effect of sample aging, the ambient lab environment, spray voltage, analyte surface concentration, and surface type on this oxidative modification of spotted analytes, exemplified by tamoxifen and reserpine, during analysis by desorption electrospray ionization mass spectrometry was studied. Simple exposure of the samples to air and to ambient lighting increased the extent of oxidation. Increased spray voltage lead also to increased analyte oxidation, possibly as a result of oxidative species formed electrochemically at the emitter electrode or in the gas - phase by discharge processes. These oxidative species are carried by the spray and impinge on and react with the sampled analyte during desorption/ionization. The relative abundance of oxidized species was more significant for analysis of deposited analyte having a relatively low surface concentration. Increasing spray solvent flow rate and addition of hydroquinone as a redox buffer to the spray solvent were found to decrease, but not entirely eliminate, analyte oxidation during analysis. The major parameters that both minimize and maximize analyte oxidation were identified and DESI-MS operational recommendations to avoid these unwanted reactions are suggested.

  8. Whole Reproductive System Non-Negative Matrix Factorization Mass Spectrometry Imaging of an Early-Stage Ovarian Cancer Mouse Model.

    PubMed

    Paine, Martin R L; Kim, Jaeyeon; Bennett, Rachel V; Parry, R Mitchell; Gaul, David A; Wang, May D; Matzuk, Martin M; Fernández, Facundo M

    2016-01-01

    High-grade serous carcinoma (HGSC) is the most common and deadliest form of ovarian cancer. Yet it is largely asymptomatic in its initial stages. Studying the origin and early progression of this disease is thus critical in identifying markers for early detection and screening purposes. Tissue-based mass spectrometry imaging (MSI) can be employed as an unbiased way of examining localized metabolic changes between healthy and cancerous tissue directly, at the onset of disease. In this study, we describe MSI results from Dicer-Pten double-knockout (DKO) mice, a mouse model faithfully reproducing the clinical nature of human HGSC. By using non-negative matrix factorization (NMF) for the unsupervised analysis of desorption electrospray ionization (DESI) datasets, tissue regions are segregated based on spectral components in an unbiased manner, with alterations related to HGSC highlighted. Results obtained by combining NMF with DESI-MSI revealed several metabolic species elevated in the tumor tissue and/or surrounding blood-filled cyst including ceramides, sphingomyelins, bilirubin, cholesterol sulfate, and various lysophospholipids. Multiple metabolites identified within the imaging study were also detected at altered levels within serum in a previous metabolomic study of the same mouse model. As an example workflow, features identified in this study were used to build an oPLS-DA model capable of discriminating between DKO mice with early-stage tumors and controls with up to 88% accuracy. PMID:27159635

  9. Precision Spectrophotometric Calibration System for Dark Energy Instruments

    SciTech Connect

    Schubnell, Michael S.

    2015-06-30

    For this research we build a precision calibration system and carried out measurements to demonstrate the precision that can be achieved with a high precision spectrometric calibration system. It was shown that the system is capable of providing a complete spectrophotometric calibration at the sub-pixel level. The calibration system uses a fast, high precision monochromator that can quickly and efficiently scan over an instrument’s entire spectral range with a spectral line width of less than 0.01 nm corresponding to a fraction of a pixel on the CCD. The system was extensively evaluated in the laboratory. Our research showed that a complete spectrophotometric calibration standard for spectroscopic survey instruments such as DESI is possible. The monochromator precision and repeatability to a small fraction of the DESI spectrograph LSF was demonstrated with re-initialization on every scan and thermal drift compensation by locking to multiple external line sources. A projector system that mimics telescope aperture for point source at infinity was demonstrated.

  10. [Evidenzbasierte Leitlinien, Anspruch und Wirklichkeit].

    PubMed

    Gutsch, Johannes; Reif, Marcus; Müller-Hübenthal, Boris; Matthiessen, Peter F

    2016-01-01

    Mit der Konzeption der «Evidenzbasierten Medizin» und den «Evidenzbasierten Leitlinien» soll mithilfe von Formalisierungsprozeduren die ärztliche Irrtumsanfälligkeit kalkulierbar gemacht werden. Quantifizierte objektive Aussagen über die therapeutische Wirksamkeit einer Behandlung sollen die individuelle ärztliche Beurteilung der therapeutischen Wirksamkeit überflüssig machen. Damit kommt der Befolgung von formalen Regeln die entscheidende Rolle bei der Beantwortung der Frage nach dem Wahrheitsgehalt und dem Wirklichkeitsbezug zu. Im Rahmen evidenzbasierter Leitlinien werden vorrangig die Ergebnisse randomisierter kontrollierter Studien (RCT) oder Meta-Analysen solcher Studien herangezogen. Am Beispiel der S3-Leitlinie «Malignes Melanom» wird hier eine evidenzbasierte Urteilsbildung zur Wirksamkeit einer unkonventionellen Therapie - hier mit einem Mistelpräparat - analytisch nachvollzogen. Die für die Beurteilung dieser unkonventionellen Therapie herangezogene randomisierte Studie wird genauer methodisch analysiert. Obwohl sie keine statistisch basierte Aussage zulässt, wurde eine Leitlinienempfehlung auf Basis dieser Studie abgeleitet. Es wird gezeigt, dass 1) allein die Existenz einer einzigen RCT mit hoher Evidenz gleichgesetzt wird, 2) die Ergebnisse trotz beträchtlicher Fehlinterpretationen in eine S3-Leitlinie einfließen und 3) Meinungen anstelle kritischer wissenschaftlicher Analysen verarbeitet werden. Unsere Untersuchung zeigt, dass noch so ausgefeilte epistemologische und methodologische Formalien den Arzt nicht von der Pflicht entbinden, auf Basis seiner ärztlichen Erfahrung und professionellen Kompetenz den Realitätswert der ihm zur Verfügung stehenden Information zu beurteilen. PMID:27161555

  11. Wissenschaft, die unsere Kultur verändert. Tiefenschichten des Streits um die Evolutionstheorie

    NASA Astrophysics Data System (ADS)

    Patzelt, Werner J.

    Die Evolutionstheorie ist eine der erfolgreichsten wissenschaftlichen Theorien. Sie erlaubt es, unsere Herkunft zu verstehen und riskante Merkmale gerade der menschlichen Spezies zu begreifen. Zugleich ist die Evolutionstheorie eine der umstrittensten Theorien. Das liegt nicht an ihrer empirischen Tragfähigkeit, sondern an ihrem Gegenstand. Sie handelt nämlich nicht nur - wie Hunderte andere wissenschaftliche Theorien - von der "Welt da draußen“, sondern vor allem auch von uns selbst und von unserem Platz in dieser Welt. Den einen gilt sie obendrein als Überwinderin religiösen Aberglaubens, den anderen als neuer Zugang zu Gott und seinem Wirken in der Welt. Ferner sehen die einen in der Evolution eine unbezweifelbare Tatsache gleich der Schwerkraft oder dem Holocaust, die anderen aber eine - noch oder dauerhaft - unbewiesene Hypothese oder gar eine falsche Schöpfungslehre. Und während die meisten Streitfragen solcher Art nach wechselseitig akzeptierten Regeln ‚normaler Wissenschaft‘ geklärt werden, wird bei der Frage nach dem Woher unserer Spezies und Kultur die intellektuelle Zuständigkeit von Wissenschaft mitunter überhaupt bezweifelt. Anscheinend geht es schon um recht tiefe Schichten unserer Kultur und nicht nur der wissenschaftlichen, wenn - wie seit 150 Jahren - um die Evolutionstheorie gestritten wird. Wie sehen diese Schichten aus?

  12. Technikwissenschaft - Erfinden und Entdecken

    NASA Astrophysics Data System (ADS)

    Linnemann, Gerhard

    Umrissen wird das allgemeine Ziel der Technikwissenschaft, konstruktiv zu verwerten und nicht-natürlich Entdeckbares zu erfinden. Wir befinden uns in einer Umwälzung der Technik im Verlauf der wissenschaftlich-technischen Revolution, auf dem Wege zu einem neuen Techniktyp. Dieser schafft und nutzt die künstliche Intelligenz. Dazu benötigt der in der Technik tätige Mensch spezielle Kenntnisse und Erfahrungen in kreativ-konstruktiver, -gestalterischer und erfinderischer Sicht mit dem Einsatz spezieller Strukturen und Sprachen. Vorschläge zur Arbeitsweise in der Technik werden gegeben.Translated AbstractTechnological Science-Invent and DiscoverThe general aim of engineering science is outlined to utilize results constructively and to invent something that cannot be discovered in nature. We are now in a period of transformation of technology in the course of scientific-technological revolution, on the way to a new type of technology. This new type creates and utilizes artificial intelligence. For this, man acitive in this field requires special knowledge and experiences in a creative, constructive, design-oriented and ultimately inventive way by deploying special structures and languages. There are also made some proposals concerning the method of working in the field of technology.

  13. Neuere Untersuchungen zur Prädiktion von EEG-Signalen bei Epilepsie

    NASA Astrophysics Data System (ADS)

    Niederhöfer, C.; Tetzlaff, R.

    2007-06-01

    Seit einigen Jahren ist die Analyse von EEG-Signalen bei Epilepsie Gegenstand zahlreicher wissenschaftlicher Arbeiten; Zielvorstellung ist dabei die Entwicklung von Verfahren zur Erkennung eines möglichen Voranfallszustandes. Im Vordergrund steht beispielsweise die Approximation einer so genannten effektiven Korrelationsdimension, die Bestimmung der maximalen Lyapunov-Exponenten, Detektionsverfahren für Muster bei Zellularen Nichtlinearen Netzwerken, die Bestimmung der mittleren Phasenkohärenz und Verfahren zur nichtlinearen Prädiktion von EEG-Signalen. Trotz umfangreicher Bemühungen kann bis heute eine Erkennung von Anfallsvorboten mit einer Sensitivität und Spezifität, die eine automatisierte Anfallsvorhersage ermöglichen würde, noch nicht durchgeführt werden. In diesem Beitrag werden neue Ergebnisse zur Prädiktion von EEG-Signalen bei Epilepsie vorgestellt. Dabei werden Signale, welche mittels intrakranieller electrocorticographischer (ECoG) und stereoelectroencephalographischer (SEEG) Ableitungen registriert wurden, segmentweise analysiert. Unter der Annahme, dass sich Änderungen des Systems ,,Gehirn" als Änderungen im Prädiktor, d.h. in seinen Systemparametern widerspiegeln, könnte eine nähere Betrachtung der Prädiktoreigenschaften zu einer Erkennung von Anfallsvorboten führen.

  14. Ökologische Grundlagen und limitierende Faktoren der Renaturierung

    NASA Astrophysics Data System (ADS)

    Rosenthal, Gert; Eichberg, Carsten

    In den dicht besiedelten und agrarisch besonders intensiv genutzten Regionen Mittel- und Westeuropas ist seit Ende des Zweiten Weltkrieges ein fortschreitender Verlust an naturnahen ökosystemen mit hoher biologischer Vielfalt zu verzeichnen. Spätestens seit den 1970er-Jahren ist daher die Neuschaffung und Wiederherstellung gefährdeter Lebensräume und Biozönosen zunehmend in den Mittelpunkt von Naturschutzmaßnahmen gerückt (Bakker 1989, Muller et al. 1998, Bakker und Berendse 1999). Aufgrund fehlender wissenschaftlicher Grundlagen und praktischer Erfahrungen wurden Renaturierungsmaßnahmen anfangs fast durchweg nach dem trial and error-Prinzip durchgeführt. Im Vordergrund standen dabei zunächst die Wiederherstellung adäquater abiotischer Standortbedingungen sowie die Reorganisation traditioneller Nutzungsmanagements. Bei Ersterem ging es neben der Wiedervernässung entwässerter Feuchtgebiete (Pfadenhauer und Grootjans 1999) vor allem darum, Eutrophierungseffekte zu beseitigen und die Produktivität des Standortes auf das Niveau der Zielgemeinschaft zurückzuführen (Gough und Marrs 1990, Oomes et al. 1996, Snow et al. 1997, Tallowin et al. 1998).

  15. The Nachlass (estate) of Heinrich von Eggeling (1869-1954), long-time secretary of the Anatomische Gesellschaft.

    PubMed

    Winkelmann, Andreas

    2015-09-01

    Heinrich von Eggeling (1869-1954), professor of anatomy in Breslau from 1922, was secretary of the Anatomische Gesellschaft (AG) from 1919 until 1949 and also editor of the Anatomischer Anzeiger, today's Annals of Anatomy. His "Wissenschaftlicher Nachlass [scientific estate]" could recently be located in private hands and has now been made available at the archive of the AG held by the current secretary. It consists of 45 folders, mainly containing von Eggeling's national and international correspondence from 1919 to 1953. It thus covers the times of the Weimar republic and of the "Third Reich" as well as the post-war period, when the AG had been officially closed down by the Allied Control Council and was eventually re-founded in 1949. Von Eggeling preserved this material despite war destruction of his Berlin home, where he lived after his retirement in 1935, and his cramped post-war confines in a small town near Hannover. The estate also includes autobiographical manuscripts of von Eggeling and some material from his predecessor, the first secretary of the AG since 1886, Karl von Bardeleben (1849-1918). There is evidence that the correspondence is not complete, even if there are no significant time gaps. The contents suggest that letters deemed insignificant, like fee reminders or editorial decisions, were discarded at some point, but it remains unclear by whom. This estate fills a significant gap in the historical material related to the AG and will be an important source for any future historical investigation regarding the society.

  16. Genome-wide insertion–deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea

    PubMed Central

    Das, Shouvik; Upadhyaya, Hari D.; Srivastava, Rishi; Bajaj, Deepak; Gowda, C.L.L.; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K.; Parida, Swarup K.

    2015-01-01

    We developed 21,499 genome-wide insertion–deletion (InDel) markers (2- to 54-bp in silico fragment length polymorphism) by comparing the genomic sequences of four (desi, kabuli and wild C. reticulatum) chickpea [Cicer arietinum (L.)] accessions. InDel markers showing 2- to 6-bp fragment length polymorphism among accessions were abundant (76.8%) in the chickpea genome. The physically mapped 7,643 and 13,856 markers on eight chromosomes and unanchored scaffolds, respectively, were structurally and functionally annotated. The 4,506 coding (23% large-effect frameshift mutations) and regulatory InDel markers were identified from 3,228 genes (representing 11.7% of total 27,571 desi genes), suggesting their functional relevance for trait association/genetic mapping. High amplification (97%) and intra-specific polymorphic (60–83%) potential and wider genetic diversity (15–89%) were detected by genome-wide 6,254 InDel markers among desi, kabuli and wild accessions using even a simpler cost-effective agarose gel-based assay. This signifies added advantages of this user-friendly genetic marker system for manifold large-scale genotyping applications in laboratories with limited infrastructure and resources. Utilizing 6,254 InDel markers-based high-density (inter-marker distance: 0.212 cM) inter-specific genetic linkage map (ICC 4958 × ICC 17160) of chickpea as a reference, three major genomic regions harboring six flowering and maturity time robust QTLs (16.4–27.5% phenotypic variation explained, 8.1–11.5 logarithm of odds) were identified. Integration of genetic and physical maps at these target QTL intervals mapped on three chromosomes delineated five InDel markers-containing candidate genes tightly linked to the QTLs governing flowering and maturity time in chickpea. Taken together, our study demonstrated the practical utility of developing and high-throughput genotyping of such beneficial InDel markers at a genome-wide scale to expedite genomics

  17. Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.

    PubMed

    Das, Shouvik; Upadhyaya, Hari D; Srivastava, Rishi; Bajaj, Deepak; Gowda, C L L; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K; Parida, Swarup K

    2015-10-01

    We developed 21,499 genome-wide insertion-deletion (InDel) markers (2- to 54-bp in silico fragment length polymorphism) by comparing the genomic sequences of four (desi, kabuli and wild C. reticulatum) chickpea [Cicer arietinum (L.)] accessions. InDel markers showing 2- to 6-bp fragment length polymorphism among accessions were abundant (76.8%) in the chickpea genome. The physically mapped 7,643 and 13,856 markers on eight chromosomes and unanchored scaffolds, respectively, were structurally and functionally annotated. The 4,506 coding (23% large-effect frameshift mutations) and regulatory InDel markers were identified from 3,228 genes (representing 11.7% of total 27,571 desi genes), suggesting their functional relevance for trait association/genetic mapping. High amplification (97%) and intra-specific polymorphic (60-83%) potential and wider genetic diversity (15-89%) were detected by genome-wide 6,254 InDel markers among desi, kabuli and wild accessions using even a simpler cost-effective agarose gel-based assay. This signifies added advantages of this user-friendly genetic marker system for manifold large-scale genotyping applications in laboratories with limited infrastructure and resources. Utilizing 6,254 InDel markers-based high-density (inter-marker distance: 0.212 cM) inter-specific genetic linkage map (ICC 4958 × ICC 17160) of chickpea as a reference, three major genomic regions harboring six flowering and maturity time robust QTLs (16.4-27.5% phenotypic variation explained, 8.1-11.5 logarithm of odds) were identified. Integration of genetic and physical maps at these target QTL intervals mapped on three chromosomes delineated five InDel markers-containing candidate genes tightly linked to the QTLs governing flowering and maturity time in chickpea. Taken together, our study demonstrated the practical utility of developing and high-throughput genotyping of such beneficial InDel markers at a genome-wide scale to expedite genomics-assisted breeding

  18. Development work for a superconducting linear collider

    NASA Technical Reports Server (NTRS)

    Matheisen, Axel

    1995-01-01

    For future linear e(+)e(-) colliders in the TeV range several alternatives are under discussion. The TESLA approach is based on the advantages of superconductivity. High Q values of the accelerator structures give high efficiency for converting RF power into beam power. A low resonance frequency for the RF structures can be chosen to obtain a large number of electrons (positrons) per bunch. For a given luminosity the beam dimensions can be chosen conservatively which leads to relaxed beam emittance and tolerances at the final focus. Each individual superconducting accelerator component (resonator cavity) of this linear collider has to deliver an energy gain of 25 MeV/m to the beam. Today s.c. resonators are in use at CEBAF/USA, at DESY/Germany, Darmstadt/Germany KEK/Japan and CERN/Geneva. They show acceleration gradients between 5 MV/m and 10 MV/m. Encouraging experiments at CEA Saclay and Cornell University showed acceleration gradients of 20 MV/m and 25 MV/m in single and multicell structures. In an activity centered at DESY in Hamburg/Germany the TESLA collaboration is constructing a 500 MeV superconducting accelerator test facility (TTF) to demonstrate that a linear collider based on this technique can be built in a cost effective manner and that the necessary acceleration gradients of more than 15 MeV/m can be reached reproducibly. The test facility built at DESY covers an area of 3.000 m2 and is divided into 3 major activity areas: (1) The testlinac, where the performance ofthe modular components with an electron beam passing the 40 m long acceleration section can be demonstrated. (2) The test area, where all individual resonators are tested before installation into a module. (3) The preparation and assembly area, where assembly of cavities and modules take place. We report here on the design work to reach a reduction of costs compared to actual existing superconducting accelerator structures and on the facility set up to reach high acceleration gradients in

  19. Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea.

    PubMed

    Das, Shouvik; Upadhyaya, Hari D; Bajaj, Deepak; Kujur, Alice; Badoni, Saurabh; Laxmi; Kumar, Vinod; Tripathi, Shailesh; Gowda, C L Laxmipathi; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K; Parida, Swarup K

    2015-06-01

    A rapid high-resolution genome-wide strategy for molecular mapping of major QTL(s)/gene(s) regulating important agronomic traits is vital for in-depth dissection of complex quantitative traits and genetic enhancement in chickpea. The present study for the first time employed a NGS-based whole-genome QTL-seq strategy to identify one major genomic region harbouring a robust 100-seed weight QTL using an intra-specific 221 chickpea mapping population (desi cv. ICC 7184 × desi cv. ICC 15061). The QTL-seq-derived major SW QTL (CaqSW1.1) was further validated by single-nucleotide polymorphism (SNP) and simple sequence repeat (SSR) marker-based traditional QTL mapping (47.6% R(2) at higher LOD >19). This reflects the reliability and efficacy of QTL-seq as a strategy for rapid genome-wide scanning and fine mapping of major trait regulatory QTLs in chickpea. The use of QTL-seq and classical QTL mapping in combination narrowed down the 1.37 Mb (comprising 177 genes) major SW QTL (CaqSW1.1) region into a 35 kb genomic interval on desi chickpea chromosome 1 containing six genes. One coding SNP (G/A)-carrying constitutive photomorphogenic9 (COP9) signalosome complex subunit 8 (CSN8) gene of these exhibited seed-specific expression, including pronounced differential up-/down-regulation in low and high seed weight mapping parents and homozygous individuals during seed development. The coding SNP mined in this potential seed weight-governing candidate CSN8 gene was found to be present exclusively in all cultivated species/genotypes, but not in any wild species/genotypes of primary, secondary and tertiary gene pools. This indicates the effect of strong artificial and/or natural selection pressure on target SW locus during chickpea domestication. The proposed QTL-seq-driven integrated genome-wide strategy has potential to delineate major candidate gene(s) harbouring a robust trait regulatory QTL rapidly with optimal use of resources. This will further assist us to extrapolate the

  20. Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.

    PubMed

    Das, Shouvik; Upadhyaya, Hari D; Srivastava, Rishi; Bajaj, Deepak; Gowda, C L L; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K; Parida, Swarup K

    2015-10-01

    We developed 21,499 genome-wide insertion-deletion (InDel) markers (2- to 54-bp in silico fragment length polymorphism) by comparing the genomic sequences of four (desi, kabuli and wild C. reticulatum) chickpea [Cicer arietinum (L.)] accessions. InDel markers showing 2- to 6-bp fragment length polymorphism among accessions were abundant (76.8%) in the chickpea genome. The physically mapped 7,643 and 13,856 markers on eight chromosomes and unanchored scaffolds, respectively, were structurally and functionally annotated. The 4,506 coding (23% large-effect frameshift mutations) and regulatory InDel markers were identified from 3,228 genes (representing 11.7% of total 27,571 desi genes), suggesting their functional relevance for trait association/genetic mapping. High amplification (97%) and intra-specific polymorphic (60-83%) potential and wider genetic diversity (15-89%) were detected by genome-wide 6,254 InDel markers among desi, kabuli and wild accessions using even a simpler cost-effective agarose gel-based assay. This signifies added advantages of this user-friendly genetic marker system for manifold large-scale genotyping applications in laboratories with limited infrastructure and resources. Utilizing 6,254 InDel markers-based high-density (inter-marker distance: 0.212 cM) inter-specific genetic linkage map (ICC 4958 × ICC 17160) of chickpea as a reference, three major genomic regions harboring six flowering and maturity time robust QTLs (16.4-27.5% phenotypic variation explained, 8.1-11.5 logarithm of odds) were identified. Integration of genetic and physical maps at these target QTL intervals mapped on three chromosomes delineated five InDel markers-containing candidate genes tightly linked to the QTLs governing flowering and maturity time in chickpea. Taken together, our study demonstrated the practical utility of developing and high-throughput genotyping of such beneficial InDel markers at a genome-wide scale to expedite genomics-assisted breeding

  1. A Tony Thomas-Inspired Guide to INSPIRE

    SciTech Connect

    O'Connell, Heath B.; /Fermilab

    2010-04-01

    The SPIRES database was created in the late 1960s to catalogue the high energy physics preprints received by the SLAC Library. In the early 1990s it became the first database on the web and the first website outside of Europe. Although indispensible to the HEP community, its aging software infrastructure is becoming a serious liability. In a joint project involving CERN, DESY, Fermilab and SLAC, a new database, INSPIRE, is being created to replace SPIRES using CERN's modern, open-source Invenio database software. INSPIRE will maintain the content and functionality of SPIRES plus many new features. I describe this evolution from the birth of SPIRES to the current day, noting that the career of Tony Thomas spans this timeline.

  2. Current Experiments in Particle Physics (September 1996)

    SciTech Connect

    Galic, H.; Lehar, F.; Klyukhin, V.I.; Ryabov, Yu.G.; Bilak, S.V.; Illarionova, N.S.; Khachaturov, B.A.; Strokovsky, E.A.; Hoffman, C.M.; Kettle, P.-R.; Olin, A.; Armstrong, F.E.

    1996-09-01

    This report contains summaries of current and recent experiments in Particle Physics. Included are experiments at BEPC (Beijing), BNL, CEBAF, CERN, CESR, DESY, FNAL, Frascati, ITEP (Moscow), JINR (Dubna), KEK, LAMPF, Novosibirsk, PNPI (St. Petersburg), PSI, Saclay, Serpukhov, SLAC, and TRIUMF, and also several proton decay and solar neutrino experiments. Excluded are experiments that finished taking data before 1991. Instructions are given for the World Wide Web (WWW) searching of the computer database (maintained under the SLAC-SPIRES system) that contains the summaries. This report contains full summaries of 180 approved current and recent experiments in elementary particle physics. The focus of the report is on selected experiments which directly contribute to our better understanding of elementary particles and their properties such as masses, widths or lifetimes, and branching fractions.

  3. TESLA cavity driving with FPGA controller

    NASA Astrophysics Data System (ADS)

    Czarski, Tomasz; Pozniak, Krzysztof; Romaniuk, Ryszard; Simrock, Stefan

    2005-09-01

    The digital control of the TESLA (TeV-Energy Superconducting Linear Accelerator) resonator is presented. The laboratory setup of the CHECHIA cavity in DESY-Hamburg has been driven by the FPGA (Field Programmable Gate Array) technology system. This experiment focused attention to the general recognition of the cavity features and projected control methods. The electrical model of the resonator is taken as a consideration origin. The calibration of the signal channel is considered as a key preparation for an efficient cavity driving. The identification of the resonator parameters is confirmed as a proper approach for the required performance: driving on resonance during filling and field stabilization during flattop time with reasonable power consumption. The feed-forward and feedback modes were applied successfully for the CHECHIA cavity driving. Representative results of experiments are presented for different levels of the cavity field gradient.

  4. Constraints on Ionizing Photon Production from the Large-scale Lyα Forest

    NASA Astrophysics Data System (ADS)

    Pontzen, Andrew; Bird, Simeon; Peiris, Hiranya; Verde, Licia

    2014-09-01

    Recent work has shown that the z ~= 2.5 Lyα forest on large scales encodes information about the galaxy and quasar populations that keep the intergalactic medium photoionized. We present the first forecasts for constraining the populations with data from current and next-generation surveys. At a minimum, the forest should tell us whether galaxies or, conversely, quasars dominate the photon production. The number density and clustering strength of the ionizing sources might be estimated to sub-10% precision with a DESI-like survey if degeneracies (e.g., with the photon mean-free-path, small-scale clustering power normalization, and potentially other astrophysical effects) can be broken by prior information. We demonstrate that when inhomogeneous ionization is correctly handled, constraints on dark energy do not degrade.

  5. Equilibration dynamics and conductivity of warm dense hydrogen.

    PubMed

    Zastrau, U; Sperling, P; Becker, A; Bornath, T; Bredow, R; Döppner, T; Dziarzhytski, S; Fennel, T; Fletcher, L B; Förster, E; Fortmann, C; Glenzer, S H; Göde, S; Gregori, G; Harmand, M; Hilbert, V; Holst, B; Laarmann, T; Lee, H J; Ma, T; Mithen, J P; Mitzner, R; Murphy, C D; Nakatsutsumi, M; Neumayer, P; Przystawik, A; Roling, S; Schulz, M; Siemer, B; Skruszewicz, S; Tiggesbäumker, J; Toleikis, S; Tschentscher, T; White, T; Wöstmann, M; Zacharias, H; Redmer, R

    2014-07-01

    We investigate subpicosecond dynamics of warm dense hydrogen at the XUV free-electron laser facility (FLASH) at DESY (Hamburg). Ultrafast impulsive electron heating is initiated by a ≤ 300-fs short x-ray burst of 92-eV photon energy. A second pulse probes the sample via x-ray scattering at jitter-free variable time delay. We show that the initial molecular structure dissociates within (0.9 ± 0.2) ps, allowing us to infer the energy transfer rate between electrons and ions. We evaluate Saha and Thomas-Fermi ionization models in radiation hydrodynamics simulations, predicting plasma parameters that are subsequently used to calculate the static structure factor. A conductivity model for partially ionized plasma is validated by two-temperature density-functional theory coupled to molecular dynamic simulations and agrees with the experimental data. Our results provide important insights and the needed experimental data on transport properties of dense plasmas.

  6. Novel module production methods for the CMS pixel detector, upgrade phase I

    NASA Astrophysics Data System (ADS)

    Blank, T.; Caselle, M.; Weber, M.; Kudella, S.; Colombo, F.; Hansen, K.; Arab, S.

    2015-02-01

    For the High-Luminosity upgrade of the LHC (HL-LHC), phase I, the CMS pixel detector needs to be replaced. In order to improve the tracking resolution even at high luminosity the pixel detector is upgraded by a fourth barrel layer. This paper describes the production process and results for the fourth barrel layer for the CMS silicon pixel detector, upgrade phase I. The additional barrel layer will be produced by KIT and DESY. Both research centers have commonly developed and investigated new production processes, including SAC solder bump jetting, gold stud bumping and "Precoat by Powder Processes" (PPS) to bump the sensor tiles and prepare them for the flip-chip process. First bare modules have been produced with the new digital ROC.

  7. Next-to-leading-order QCD corrections to jet cross sections and jet rates in deeply inelastic electron-proton scattering

    SciTech Connect

    Graudenz, D. )

    1994-04-01

    Jet cross sections in deeply inelastic scattering in the case of transverse photon exchange for the production of (1+1) and (2+1) jets are calculated in next-to-leading-order QCD (here the +1'' stands for the target remnant jet, which is included in the jet definition). The jet definition scheme is based on a modified JADE cluster algorithm. The calculation of the (2+1) jet cross section is described in detail. Results for the virtual corrections as well as for the real initial- and final-state corrections are given explicitly. Numerical results are stated for jet cross sections as well as for the ratio [sigma][sub (2+1) jet]/[sigma][sub tot] that can be expected at E665 and DESY HERA. Furthermore the scale ambiguity of the calculated jet cross sections is studied and different parton density parametrizations are compared.

  8. Heavy quark production in variable flavor number schemes

    NASA Astrophysics Data System (ADS)

    Chuvakin, Anton Alexeevich

    The dissertation deals with the calculation of heavy flavor parton densities and deep inelastic structure functions. The three flavor parton densities are evolved from a small value of the scale μ2 up to the heavy quark threshold where the heavy quark densities are generated using the leading, next-to-leading or next-to- next-to leading order matching conditions. These densities are then used to compute the heavy quark structure functions F 2,H (x, Q2) and FL,H(x, Q2) for charm and bottom quarks in both fixed order perturbation theory and in variable flavor number schemes (VFNS). The question of choosing the best VFNS scheme is discussed. A comparison with the recent experimental data from the ZEUS and H1 experiments at DESY, Hamburg is provided.

  9. Quantum Efficiency Characterization and Optimization of a Tungsten Transition-Edge Sensor for ALPS II

    NASA Astrophysics Data System (ADS)

    Bastidon, Noëmie; Horns, Dieter; Lindner, Axel

    2016-07-01

    The ALPS II experiment, Any Light Particle Search II at DESY in Hamburg, will look for sub-eV mass new fundamental bosons (e.g., axion-like particles, hidden photons, and other weakly interacting sub-eV particles) in the next years by means of a light-shining-through-wall setup. The ALPS II photosensor is a tungsten transition-edge sensor (W-TES) optimized for 1064 nm photons. This TES, operated at 80 mK, has already allowed single infrared photon detections as well as non-dispersive spectroscopy with very low background rates. The demonstrated quantum efficiency for such TES is up to 95 % (1064 nm) as has been already demonstrated by the US National Institute of Standards and Technology. A back-to-back measurement of the ALPS TES quantum efficiency using a calibrated charge-coupled device camera has lead to a first estimation of 30 %. Improvement methods are discussed.

  10. The type I interleukin-1 receptor mediates fever in the rat as shown by interleukin-1 receptor subtype selective ligands.

    PubMed

    Malinowsky, D; Chai, Z; Bristulf, J; Simoncsits, A; Bartfai, T

    1995-12-01

    The interleukin-1 (IL-1) system possesses two distinct receptors (type I and type II) which, together with the accessory protein, mediate a multitude of responses to IL-1 alpha and IL-1 beta, including fever. So far, no receptor subtype-specific ligands have been described. Since both types of IL-1 receptors occur in the thermoregulatory areas it was unclear which IL-1 receptor type mediates fever. We report here that for a series of deletion mutants of human recombinant IL-1 beta (hrIL-1 beta), the affinity of these ligands for the type I IL-1 receptor correlates with their efficacy to evoke the fever response (hrIL-1 beta > des-SND52-54 > des-QGE48-50 > des-I56). Thus, the results suggest that agonist occupancy of the type I IL-1 receptor is essential for IL-1 beta-mediated fever.

  11. Parameter study of the VUV-FEL at the Tesla Test Facility

    SciTech Connect

    Brefeld, W.; Faatz, B.

    1995-12-31

    In this contribution we present a detailed study of the influence of the electron beam and machine parameters on the performance of the TTF VUV FEL, which is in its design stage at DESY. The TTF FEL will be a 6 nm SASE device operating with the beam provided by the Tesla Test Facility superconducting linac, driven by an rf photcathode gun. The FEL output power and saturation length have been assessed with the use of different 2D3-D steady state simulation codes. The parameter range over which the FEL would reach saturation within the specified undulator length of 25 to 30 m have been determined and checked against semi-analytical expressions.

  12. Shot noise startup of the 6 NM SASE FEL at the Tesla Test Facility

    SciTech Connect

    Pierini, P.; Fawley, W.M.

    1995-12-31

    We present here an analysis of the shot noise startup of the 6 nm SASE FEI proposal at the TESLA Test Facility in DESY The statistical of the saturation length and output power due to the intrinsic randomness of the noise startup are investigated with the use of the 2D time dependent code GINGER, that takes into account propagation effects and models shot noise. We then provide estimates for the spectral contents and linewidth of the emitted radiation and describe its spiking characteristics. The output radiation will develop superradiant spikes seeded by the shot noise in the electron beam, which can entrance the average emitted power at the expense of some spectral broadening.

  13. Cavity Alighment Using Beam Induced Higher Order Modes Signals in the TTF Linac

    SciTech Connect

    Ross, M.; Frisch, J.; Hacker, K.E.; Jones, R.M.; McCormick, D.; O'Connell, C.; Smith, T.; Napoly, O.; Paparella, R.; Baboi, N.; Wendt, M.; /DESY

    2005-07-06

    Each nine cell superconducting (SC) accelerator cavity in the TESLA Test Facility (TTF) at DESY [1] has two higher order mode (HOM) couplers that efficiently remove the HOM power [2]. They can also provide useful diagnostic signals. The most interesting modes are in the first 2 cavity dipole passbands. They are easy to identify and their amplitude depends linearly on the beam offset from the cavity axis making them excellent beam position monitors (BPM). By steering the beam through an eight-cavity cryomodule, we can use the HOM signals to estimate internal residual alignment errors and minimize wakefield related beam emittance growth. We built and tested a time-domain based waveform recorder system that captures information from each mode in these two bands on each beam pulse. In this paper we present a preliminary experimental study of the single-bunch generated HOM signals at the TTF linac including estimates of cavity alignment precision and HOM BPM resolution.

  14. Beam test results of 3D silicon pixel sensors for future upgrades

    NASA Astrophysics Data System (ADS)

    Nellist, C.; Gligorova, A.; Huse, T.; Pacifico, N.; Sandaker, H.

    2013-12-01

    3D silicon has undergone an intensive beam test programme which has resulted in the successful qualification for the ATLAS Insertable B-Layer (IBL) upgrade project to be installed in 2013-2014. This paper presents selected results from this study with a focus on the final IBL test beam of 2012 where IBL prototype sensors were investigated. 3D devices were studied with 4 GeV positrons at DESY and 120 GeV pions at the SPS at CERN. Measurements include tracking efficiency, charge sharing, time over threshold and cluster size distributions as a function of incident angle for IBL 3D design sensors. Studies of 3D silicon sensors in an anti-proton beam test for the AEgIS experiment are also presented.

  15. Probing small parton densities in ultraperipheral A A and pA collisions at the CERN large Hadron Collider.

    PubMed

    Strikman, Mark; Vogt, Ramona; White, Sebastian

    2006-03-01

    We calculate photoproduction rates for several hard processes in ultraperipheral proton-lead and lead-lead collisions at the CERN Large Hadron Collider (LHC) with square root of sNN = 8.8 and 5.5 TeV, respectively, which could be triggered in the large LHC detectors. We use ATLAS as an example. The lead ion is treated as a source of (coherently produced) photons with energies and intensities greater than those of equivalent ep collisions at the DESY collider HERA. We find very large rates for both inclusive and diffractive production that will extend the HERA x range by nearly an order of magnitude for similar virtualities. We demonstrate that it is possible to reach the kinematic regime where nonlinear effects are larger than at HERA.

  16. Simultaneous operation of two soft x-ray free-electron lasers driven by one linear accelerator

    NASA Astrophysics Data System (ADS)

    Faatz, B.; Plönjes, E.; Ackermann, S.; Agababyan, A.; Asgekar, V.; Ayvazyan, V.; Baark, S.; Baboi, N.; Balandin, V.; von Bargen, N.; Bican, Y.; Bilani, O.; Bödewadt, J.; Böhnert, M.; Böspflug, R.; Bonfigt, S.; Bolz, H.; Borges, F.; Borkenhagen, O.; Brachmanski, M.; Braune, M.; Brinkmann, A.; Brovko, O.; Bruns, T.; Castro, P.; Chen, J.; Czwalinna, M. K.; Damker, H.; Decking, W.; Degenhardt, M.; Delfs, A.; Delfs, T.; Deng, H.; Dressel, M.; Duhme, H.-T.; Düsterer, S.; Eckoldt, H.; Eislage, A.; Felber, M.; Feldhaus, J.; Gessler, P.; Gibau, M.; Golubeva, N.; Golz, T.; Gonschior, J.; Grebentsov, A.; Grecki, M.; Grün, C.; Grunewald, S.; Hacker, K.; Hänisch, L.; Hage, A.; Hans, T.; Hass, E.; Hauberg, A.; Hensler, O.; Hesse, M.; Heuck, K.; Hidvegi, A.; Holz, M.; Honkavaara, K.; Höppner, H.; Ignatenko, A.; Jäger, J.; Jastrow, U.; Kammering, R.; Karstensen, S.; Kaukher, A.; Kay, H.; Keil, B.; Klose, K.; Kocharyan, V.; Köpke, M.; Körfer, M.; Kook, W.; Krause, B.; Krebs, O.; Kreis, S.; Krivan, F.; Kuhlmann, J.; Kuhlmann, M.; Kube, G.; Laarmann, T.; Lechner, C.; Lederer, S.; Leuschner, A.; Liebertz, D.; Liebing, J.; Liedtke, A.; Lilje, L.; Limberg, T.; Lipka, D.; Liu, B.; Lorbeer, B.; Ludwig, K.; Mahn, H.; Marinkovic, G.; Martens, C.; Marutzky, F.; Maslocv, M.; Meissner, D.; Mildner, N.; Miltchev, V.; Molnar, S.; Mross, D.; Müller, F.; Neumann, R.; Neumann, P.; Nölle, D.; Obier, F.; Pelzer, M.; Peters, H.-B.; Petersen, K.; Petrosyan, A.; Petrosyan, G.; Petrosyan, L.; Petrosyan, V.; Petrov, A.; Pfeiffer, S.; Piotrowski, A.; Pisarov, Z.; Plath, T.; Pototzki, P.; Prandolini, M. J.; Prenting, J.; Priebe, G.; Racky, B.; Ramm, T.; Rehlich, K.; Riedel, R.; Roggli, M.; Röhling, M.; Rönsch-Schulenburg, J.; Rossbach, J.; Rybnikov, V.; Schäfer, J.; Schaffran, J.; Schlarb, H.; Schlesselmann, G.; Schlösser, M.; Schmid, P.; Schmidt, C.; Schmidt-Föhre, F.; Schmitz, M.; Schneidmiller, E.; Schöps, A.; Scholz, M.; Schreiber, S.; Schütt, K.; Schütz, U.; Schulte-Schrepping, H.; Schulz, M.; Shabunov, A.; Smirnov, P.; Sombrowski, E.; Sorokin, A.; Sparr, B.; Spengler, J.; Staack, M.; Stadler, M.; Stechmann, C.; Steffen, B.; Stojanovic, N.; Sychev, V.; Syresin, E.; Tanikawa, T.; Tavella, F.; Tesch, N.; Tiedtke, K.; Tischer, M.; Treusch, R.; Tripathi, S.; Vagin, P.; Vetrov, P.; Vilcins, S.; Vogt, M.; de Zubiaurre Wagner, A.; Wamsat, T.; Weddig, H.; Weichert, G.; Weigelt, H.; Wentowski, N.; Wiebers, C.; Wilksen, T.; Willner, A.; Wittenburg, K.; Wohlenberg, T.; Wortmann, J.; Wurth, W.; Yurkov, M.; Zagorodnov, I.; Zemella, J.

    2016-06-01

    Extreme-ultraviolet to x-ray free-electron lasers (FELs) in operation for scientific applications are up to now single-user facilities. While most FELs generate around 100 photon pulses per second, FLASH at DESY can deliver almost two orders of magnitude more pulses in this time span due to its superconducting accelerator technology. This makes the facility a prime candidate to realize the next step in FELs—dividing the electron pulse trains into several FEL lines and delivering photon pulses to several users at the same time. Hence, FLASH has been extended with a second undulator line and self-amplified spontaneous emission (SASE) is demonstrated in both FELs simultaneously. FLASH can now deliver MHz pulse trains to two user experiments in parallel with individually selected photon beam characteristics. First results of the capabilities of this extension are shown with emphasis on independent variation of wavelength, repetition rate, and photon pulse length.

  17. Two-color photoionization in xuv free-electron and visible laser fields

    NASA Astrophysics Data System (ADS)

    Meyer, M.; Cubaynes, D.; O'Keeffe, P.; Luna, H.; Yeates, P.; Kennedy, E. T.; Costello, J. T.; Orr, P.; Taïeb, R.; Maquet, A.; Düsterer, S.; Radcliffe, P.; Redlin, H.; Azima, A.; Plönjes, E.; Feldhaus, J.

    2006-07-01

    Two-photon ionization of atomic helium has been measured by combining femtosecond extreme-ultraviolet pulses from the free-electron laser in Hamburg (FLASH at DESY) with intense light pulses from a synchronized neodymium-doped yttrium lithium fluoride laser. Sidebands appear in the photoelectron spectra when the two laser pulses overlap in both space and time. Their intensity exhibits a characteristic dependence on the relative time delay between the ionizing and the dressing pulses and provides an inherent time marker for time-resolved pump-probe experiments. The measurements of the sidebands are in good agreement with theoretical predictions and allow for a direct analysis of two-photon ionization, free from processes related to interference between multiple quantum paths.

  18. The silicon vertex detector of HERA-B

    SciTech Connect

    Moshous, Basil

    1998-02-01

    HERA-B is an experiment to study CP violation in the B system using an internal target at the DESY HERA proton ring(820 GeV). The main goal is to measure the asymmetry in the 'gold plated' decays of B{sup 0}, B-bar{sup 0}{yields}J/{psi}K{sub s}{sup 0} yielding a measurement of the angle {beta} of the unitarity triangle. From the semileptonic decay channels of the b, b-bar-hadron produced in association with the B{sup 0},B-bar{sup 0} can be used to tag the flavor of the B{sup 0}. The purpose of the Vertex Detector System is to provide the track coordinates for reconstructing the J/{psi}{yields}e{sup +}e{sup -}, {mu}{sup +}{mu}{sup -} secondary decay vertices and the impact parameters of all tagging particles.

  19. A compact and low-weight sputtering unit for in situ investigations of thin film growth at synchrotron radiation beamlines

    SciTech Connect

    Walter, P.; Dippel, A.-C.; Pflaum, K.; Wernecke, J.; Blume, J.; Hurk, J. van den; Klemradt, U.

    2015-05-15

    In this work, we report on a highly variable, compact, and light high-vacuum sputter deposition unit designed for in situ experiments using synchrotron radiation facilities. The chamber can be mounted at various synchrotron beamlines for scattering experiments in grazing incidence geometry. The sample position and the large exit window allow to perform x-ray experiments up to large q values. The sputtering unit is easy to mount on existing experimental setups and can be remote-controlled. In this paper, we describe in detail the design and the performance of the new sputtering chamber and present the installation of the apparatus at different 3rd generation light sources. Furthermore, we describe the different measurement options and present some selected results. The unit has been successfully commissioned and is now available for users at PETRA III at DESY.

  20. Transverse-Target-Spin Asymmetry in Exclusive {omega}-Meson Electroproduction

    SciTech Connect

    Airapetian, A.; Akopov, N.; Akopov, Z.; Aschenauer, E. C.; Augustyniak, W.; Avetissian, A.; Belostotski, S.; Blok, H. P.; Borissov, A.; Bryzgalov, V.; Jackson, H. E.; Reimer, P. E.

    2015-12-17

    Hard exclusive electroproduction of omega mesons is studied with the HERMES spectrometer at the DESY laboratory by scattering 27.6 GeV positron and electron beams off a transversely polarized hydrogen target. The amplitudes of five azimuthal modulations of the single-spin asymmetry of the cross section with respect to the transverse proton polarization are measured. They are determined in the entire kinematic region as well as for two bins in photon virtuality and momentum transfer to the nucleon. Also, a separation of asymmetry amplitudes into longitudinal and transverse components is done. These results are compared to a phenomenological model that includes the pion pole contribution. Within this model, the data favor a positive pi omega transition form factor.

  1. A compact and low-weight sputtering unit for in situ investigations of thin film growth at synchrotron radiation beamlines.

    PubMed

    Walter, P; Dippel, A-C; Pflaum, K; Wernecke, J; van den Hurk, J; Blume, J; Klemradt, U

    2015-05-01

    In this work, we report on a highly variable, compact, and light high-vacuum sputter deposition unit designed for in situ experiments using synchrotron radiation facilities. The chamber can be mounted at various synchrotron beamlines for scattering experiments in grazing incidence geometry. The sample position and the large exit window allow to perform x-ray experiments up to large q values. The sputtering unit is easy to mount on existing experimental setups and can be remote-controlled. In this paper, we describe in detail the design and the performance of the new sputtering chamber and present the installation of the apparatus at different 3rd generation light sources. Furthermore, we describe the different measurement options and present some selected results. The unit has been successfully commissioned and is now available for users at PETRA III at DESY.

  2. Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery

    NASA Astrophysics Data System (ADS)

    Gao, Yi; Zhu, Liangjia; Norton, Isaiah; Agar, Nathalie Y. R.; Tannenbaum, Allen

    2014-03-01

    Desorption electrospray ionization mass spectrometry (DESI-MS) provides a highly sensitive imaging technique for differentiating normal and cancerous tissue at the molecular level. This can be very useful, especially under intra-operative conditions where the surgeon has to make crucial decision about the tumor boundary. In such situations, the time it takes for imaging and data analysis becomes a critical factor. Therefore, in this work we utilize compressive sensing to perform the sparse sampling of the tissue, which halves the scanning time. Furthermore, sparse feature selection is performed, which not only reduces the dimension of data from about 104 to less than 50, and thus significantly shortens the analysis time. This procedure also identifies biochemically important molecules for further pathological analysis. The methods are validated on brain and breast tumor data sets.

  3. PREFACE: 22nd International Congress on X-Ray Optics and Microanalysis

    NASA Astrophysics Data System (ADS)

    Falkenberg, Gerald; Schroer, Christian G.

    2014-04-01

    ICXOM22 The 22nd edition of the International Congress on X-ray Optics and Microanalysis (ICXOM 22) was held from 2-6 September 2013, in Hamburg, Germany. The congress was organized by scientists from DESY in collaboration with TU Dresden and Helmholtz-Zentrum Geesthacht, who also formed the scientific advisory board. The congress was hosted in the historical lecture hall building of the University of Hamburg located in the city center. ICXOM22 was attended by about 210 registered participants, including 67 students, and was open for listeners. The attendance was split between 26 countries (Germany 120, rest of Europe 57, America 20, Asia 8, Australia 6). The ICXOM series is a forum for the discussion of new developments in instrumentation, methods and applications in the fields of micro- and nano-analysis by means of X-ray beams. Following the trend of the last 10 years, the conference focusses more and more on synchrotron radiation rather than X-ray laboratory sources. Besides micro-beam X-ray fluorescence and absorption spectroscopy, different methods based on diffraction and full-field imaging were covered. Newly introduced to the ICXOM series was scanning coherent X-ray diffraction imaging, which was shown to evolve into a mature method for the imaging of nanostructures, defects and strain fields. New developments on fast X-ray detectors were discussed (Lambda, Maia) and advances in X-ray optics — like the generation of a sub 5nm point focus by Multilayer Zone plates — were presented. Talks on micro- and nano-analysis applications were distributed in special sessions on bio-imaging, Earth and environmental sciences, and Cultural heritage. The congress featured nine keynote and ten plenary talks, 56 talks in 14 parallel sessions and about 120 posters in three afternoon sessions. Seventeen commercial exhibitors exposed related X-ray instrumentation products, and two luncheon seminars on detector electronics were given. This allowed us to keep the student

  4. On-line detection of human skin vapors.

    PubMed

    Martínez-Lozano, Pablo; de la Mora, Juan Fernández

    2009-06-01

    Vapors released by the skin in the hand of one human subject are detected in real time by sampling them directly from the ambient gas surrounding the hand, ionizing them by secondary electrospray ionization (SESI, via contact with the charged cloud from an electrospray source), and analyzing them in a mass spectrometer with an atmospheric pressure source (API-MS). This gas-phase approach is complementary to alternative on-line surface ionization methods such as DESI and DART. A dominating peak of lactic acid and a complete series of saturated and singly unsaturated fatty acids (C(12) to C(18)) are observed, in accordance with previous off-line studies by gas chromatography-mass spectrometry. Several other metabolites have been identified, including ketomonocarboxylic and hydroxymonocarboxylic acids.

  5. Measurement of ultra low transverse emittance at REGAE

    NASA Astrophysics Data System (ADS)

    Hachmann, M.; Flöttmann, K.

    2016-09-01

    The linear accelerator REGAE at DESY produces short and low charged electron bunches, on the one hand to resolve the excitation transitions of atoms temporally by pump-probe electron diffraction experiments and on the other hand to investigate principal mechanisms of laser plasma acceleration. For both cases a high quality electron beam is required which can be identified with a small beam emittance. A standard magnet scan is used for the emittance measurement which is in case of a low charged bunch most sensitive to the beam size determination (RMS or 2nd central moment of a distribution). Therefore the diagnostic and a routine to calculate proper central moments of an arbitrary distribution will be introduced and discussed.

  6. Inclusive production of dijets at the LHeC

    SciTech Connect

    Gay Ducati, M. B.; Griep, M. T.; Machado, M. V.

    2013-03-25

    We investigate the production of a quark-antiquark pair in inclusive photon-proton scattering, considering distinct gluon distribution functions. The role played by the parton saturation effects is studied for the kinematic regime of the upcoming Large Hadron Electron Collider (LHeC). This proposed lepton-hadron (nucleus) collider will reach energies higher than the available at DESY HERA experiment. This fact will open a new regime to probe the gluon and sea quark distributions in nucleon and on nucleus. In deep inelastic scattering in lepton-hadron colliders, events with two jets and the scattered proton in the final state are predicted to be observable, with an important contribution from charm production. Thus, the contribution from heavy quarks should be investigated in details.

  7. Data reduction systems for HEP experiments

    NASA Astrophysics Data System (ADS)

    Jaroslawski, S.

    1980-10-01

    Fast logic triggers are described which are capable of rejecting unwanted events during HEP experiments. Classes of track patterns are defined by entries in read/write memories and can be readily changed. Readout information from multiwire chambers addresses these memories and their outputs are processed by fast combinational logic to produce trigger decisions. In the circumstances where speed of decision making is not the prime consideration a much cheaper serial-parallel decision sequence may be implemented which, although slower in operation, can offer a very good definition of the tracks generated in a given data intake. Triggers of both categories are currently being used in experiments mounted at DESY and at CERN.

  8. Remote Operation of the Fermilab/NICADD Photoinjector

    SciTech Connect

    Nikolai Barov et al.

    2002-03-21

    The recognition that a new major HEP facility must receive international support and that its execution would benefit from worldwide interaction from design through operation has given rise to the term Global Accelerator Network (GAN). A welcome consequence has been a more permissive attitude toward remote operation of existing facilities.For roughly thirty years, the computer has been the principal operator interface to the beam,and, through the development of the Internet, the operator can be literally anywhere. In this note, the authors describe their approach to enabling a sufficient degree of operation of the photoinjector from afar in order to carry out investigations in beam physics. The goal was to do so on a time scale of a few months and at minimal cost. At this writing, remote shifts are routinely scheduled involving DESY and LBL, limited in frequency only by the requests of the collaborators and by the need for time to interpret the data.

  9. Mechanical stability study of capture cavity II at Fermilab

    SciTech Connect

    McGee, M.W.; Pischalnikov, Y.; /Fermilab

    2007-06-01

    Problematic resonant conditions at both 18 Hz and 180 Hz were encountered and identified early during the commissioning of Capture Cavity II (CC2) at Fermilab. CC2 consists of an external vacuum vessel and a superconducting high gradient (close to 25 MV/m) 9-cell 1.3 GHz niobium cavity, transported from DESY for use in the A0 Photoinjector at Fermilab. An ANSYS modal finite element analysis (FEA) was performed in order to isolate the source of the resonance and directed the effort towards stabilization. Using a fast piezoelectric tuner to excite (or shake) the cavity at different frequencies (from 5 Hz to 250 Hz) at a low-range sweep for analysis purposes. Both warm (300 K) and cold (1.8 K) accelerometer measurements at the cavity were taken as the resonant ''fix'' was applied. FEA results, cultural and technical noise investigation, and stabilization techniques are discussed.

  10. Time-Space Position of Warm Dense Matter in Laser Plasma Interaction Process

    SciTech Connect

    Cao, L F; Uschmann, I; Forster, E; Zamponi, F; Kampfer, T; Fuhrmann, A; Holl, A; Redmer, R; Toleikis, S; Tschentscher, T; Landen, O L; Glenzer, S H

    2006-09-25

    Laser plasma interaction experiments have been perform performed using an fs Titanium Sapphire laser. Plasmas have been generated from planar PMMA targets using single laser pulses with 3.3 mJ pulse energy, 50 fs pulse duration at 800 nm wavelength. Electron density distributions of the plasmas in different delay times have been characterized by means of Nomarski Interferometry. Experimental data were cautiously compared with relevant 1D numerical simulation. Finally these results provide a first experience of searching for the time-space position of the so-called warm dense plasma in an ultra fast laser target interaction process. These experiments aim to prepare near solid-density plasmas for Thomson scattering experiments using the short wavelength free-electron laser FLASH, DESY Hamburg.

  11. Space-Time Characterization of Laser Plasma Interactions in the Warm Dense Matter Regime

    SciTech Connect

    Cao, L F; Uschmann, I; Forster, E; Zamponi, F; Kampfer, T; Fuhrmann, A; Holl, A; Redmer, R; Toleikis, S; Tschentsher, T; Glenzer, S H

    2008-04-30

    Laser plasma interaction experiments have been performed using a fs Titanium Sapphire laser. Plasmas have been generated from planar PMMA targets using single laser pulses with 3.3 mJ pulse energy, 50 fs pulse duration at 800 nm wavelength. The electron density distributions of the plasmas in different delay times have been characterized by means of Nomarski Interferometry. Experimental data were compared with hydrodynamic simulation. First results to characterize the plasma density and temperature as a function of space and time are obtained. This work aims to generate plasmas in the warm dense matter (WDM) regime at near solid-density in an ultra-fast laser target interaction process. Plasmas under these conditions can serve as targets to develop x-ray Thomson scattering as a plasma diagnostic tool, e.g., using the VUV free-electron laser (FLASH) at DESY Hamburg.

  12. Thomson scattering from near-solid density plasmas using soft x-ray free electron lasers

    SciTech Connect

    Holl, A; Bornath, T; Cao, L; Doppner, T; Dusterer, S; Forster, E; Fortmann, C; Glenzer, S H; Gregori, G; Laarmann, T; Meiwes-Broer, K H; Przystawik, A; Radcliffe, P; Redmer, R; Reinholz, H; Ropke, G; Thiele, R; Tiggesbaumker, J; Toleikis, S; Truong, N X; Tschentscher, T; Uschmann, I; Zastrau, U

    2006-11-21

    We propose a collective Thomson scattering experiment at the VUV free electron laser facility at DESY (FLASH) which aims to diagnose warm dense matter at near-solid density. The plasma region of interest marks the transition from an ideal plasma to a correlated and degenerate many-particle system and is of current interest, e.g. in ICF experiments or laboratory astrophysics. Plasma diagnostic of such plasmas is a longstanding issue. The collective electron plasma mode (plasmon) is revealed in a pump-probe scattering experiment using the high-brilliant radiation to probe the plasma. The distinctive scattering features allow to infer basic plasma properties. For plasmas in thermal equilibrium the electron density and temperature is determined from scattering off the plasmon mode.

  13. Towards an amplitude analysis of exclusive. gamma gamma. processes

    SciTech Connect

    Pennington, M.R.

    1988-06-01

    The potential of two photon processes to shed light on the parton content of resonances, we maintain, can only be realized in practice by moving towards an Amplitude Analysis of experimental data. By using the process ..gamma gamma.. ..-->.. ..pi pi.. as an example, the way to do this is discussed. Presently claimed uncertainties in the ..gamma gamma.. width of even the well-known f/sub 2/ (1270) are shown to be over-optimistic and the fitted couplings of the overlapping scalar states in the 1 GeV region meaningless. Only the use of Amplitude Analysis techniques on the new higher statistics data from SLAC and DESY can resolve these uncertainties and lead to definite and significant results. 37 refs., 18 figs.

  14. Micromachine Wedge Stepping Motor

    SciTech Connect

    Allen, J.J.; Schriner, H.K.

    1998-11-04

    A wedge stepping motor, which will index a mechanism, has been designed and fabricated in the surface rnicromachine SUMMiT process. This device has demonstrated the ability to index one gear tooth at a time with speeds up to 205 teeth/see. The wedge stepper motor has the following features, whi:h will be useful in a number of applications. o The ability to precisely position mechanical components. . Simple pulse signals can be used for operation. o Only 2 drive signals are requixed for operation. o Torque and precision capabilities increase with device size . The device to be indexed is restrained at all times by the wedge shaped tooth that is used for actuation. This paper will discuss the theory of operation and desi=m of the wedge stepping motor. The fabrication and testing of I he device will also be presented.

  15. Free-electron laser multiplex driven by a superconducting linear accelerator.

    PubMed

    Plath, Tim; Amstutz, Philipp; Bödewadt, Jörn; Brenner, Günter; Ekanayake, Nagitha; Faatz, Bart; Hacker, Kirsten; Honkavaara, Katja; Lazzarino, Leslie Lamberto; Lechner, Christoph; Maltezopoulos, Theophilos; Scholz, Matthias; Schreiber, Siegfried; Vogt, Mathias; Zemella, Johann; Laarmann, Tim

    2016-09-01

    Free-electron lasers (FELs) generate femtosecond XUV and X-ray pulses at peak powers in the gigawatt range. The FEL user facility FLASH at DESY (Hamburg, Germany) is driven by a superconducting linear accelerator with up to 8000 pulses per second. Since 2014, two parallel undulator beamlines, FLASH1 and FLASH2, have been in operation. In addition to the main undulator, the FLASH1 beamline is equipped with an undulator section, sFLASH, dedicated to research and development of fully coherent extreme ultraviolet photon pulses using external seed lasers. In this contribution, the first simultaneous lasing of the three FELs at 13.4 nm, 20 nm and 38.8 nm is presented.

  16. Synthesis from Design Requirements of a Hybrid System for Transport Aircraft Longitudinal Control. Volume 2

    NASA Technical Reports Server (NTRS)

    Hynes, Charles S.; Hardy, Gordon H.; Sherry, Lance

    2007-01-01

    Volume I of this report presents a new method for synthesizing hybrid systems directly from desi gn requirements, and applies the method to design of a hybrid system for longitudinal control of transport aircraft. The resulting system satisfies general requirement for safety and effectiveness specified a priori, enabling formal validation to be achieved. Volume II contains seven appendices intended to make the report accessible to readers with backgrounds in human factors, flight dynamics and control, and formal logic. Major design goals are (1) system design integrity based on proof of correctness at the design level, (2) significant simplification and cost reduction in system development and certification, and (3) improved operational efficiency, with significant alleviation of human-factors problems encountered by pilots in current transport aircraft. This report provides for the first time a firm technical basis for criteria governing design and certification of avionic systems for transport aircraft. It should be of primary interest to designers of next-generation avionic systems.

  17. Inclusive K(S);(0)K(S);(0) resonance production in ep collisions at HERA.

    PubMed

    Chekanov, S; Derrick, M; Magill, S; Musgrave, B; Nicholass, D; Repond, J; Yoshida, R; Mattingly, M C K; Antonioli, P; Bari, G; Bellagamba, L; Boscherini, D; Bruni, A; Bruni, G; Cindolo, F; Corradi, M; Iacobucci, G; Margotti, A; Nania, R; Polini, A; Antonelli, S; Basile, M; Bindi, M; Cifarelli, L; Contin, A; De Pasquale, S; Sartorelli, G; Zichichi, A; Bartsch, D; Brock, I; Hartmann, H; Hilger, E; Jakob, H-P; Jüngst, M; Nuncio-Quiroz, A E; Paul, E; Samson, U; Schönberg, V; Shehzadi, R; Wlasenko, M; Brook, N H; Heath, G P; Morris, J D; Capua, M; Fazio, S; Mastroberardino, A; Schioppa, M; Susinno, G; Tassi, E; Kim, J Y; Ibrahim, Z A; Kamaluddin, B; Wan Abdullah, W A T; Ning, Y; Ren, Z; Sciulli, F; Chwastowski, J; Eskreys, A; Figiel, J; Galas, A; Gil, M; Olkiewicz, K; Stopa, P; Zawiejski, L; Adamczyk, L; Bołd, T; Grabowska-Bołd, I; Kisielewska, D; Lukasik, J; Przybycień, M; Suszycki, L; Kotański, A; Słomiński, W; Behrens, U; Blohm, C; Bonato, A; Borras, K; Ciesielski, R; Coppola, N; Fang, S; Fourletova, J; Geiser, A; Göttlicher, P; Grebenyuk, J; Gregor, I; Haas, T; Hain, W; Hüttmann, A; Januschek, F; Kahle, B; Katkov, I I; Klein, U; Kötz, U; Kowalski, H; Lobodzinska, E; Löhr, B; Mankel, R; Melzer-Pellmann, I-A; Miglioranzi, S; Montanari, A; Namsoo, T; Notz, D; Parenti, A; Rinaldi, L; Roloff, P; Rubinsky, I; Santamarta, R; Schneekloth, U; Spiridonov, A; Szuba, D; Szuba, J; Theedt, T; Wolf, G; Wrona, K; Yagües Molina, A G; Youngman, C; Zeuner, W; Drugakov, V; Lohmann, W; Schlenstedt, S; Barbagli, G; Gallo, E; Pelfer, P G; Bamberger, A; Dobur, D; Karstens, F; Vlasov, N N; Bussey, P J; Doyle, A T; Dunne, W; Forrest, M; Rosin, M; Saxon, D H; Skillicorn, I O; Gialas, I; Papageorgiu, K; Holm, U; Klanner, R; Lohrmann, E; Schleper, P; Schörner-Sadenius, T; Sztuk, J; Stadie, H; Turcato, M; Foudas, C; Fry, C; Long, K R; Tapper, A D; Matsumoto, T; Nagano, K; Tokushuku, K; Yamada, S; Yamazaki, Y; Barakbaev, A N; Boos, E G; Pokrovskiy, N S; Zhautykov, B O; Aushev, V; Borodin, M; Kadenko, I; Kozulia, A; Libov, V; Lisovyi, M; Lontkovskyi, D; Makarenko, I; Sorokin, Iu; Verbytskyi, A; Volynets, O; Son, D; de Favereau, J; Piotrzkowski, K; Barreiro, F; Glasman, C; Jimenez, M; Labarga, L; Del Peso, J; Ron, E; Soares, M; Terrón, J; Zambrana, M; Corriveau, F; Liu, C; Schwartz, J; Walsh, R; Zhou, C; Tsurugai, T; Antonov, A; Dolgoshein, B A; Gladkov, D; Sosnovtsev, V; Stifutkin, A; Suchkov, S; Dementiev, R K; Ermolov, P F; Gladilin, L K; Golubkov, Yu A; Khein, L A; Korzhavina, I A; Kuzmin, V A; Levchenko, B B; Lukina, O Yu; Proskuryakov, A S; Shcheglova, L M; Zotkin, D S; Abt, I; Caldwell, A; Kollar, D; Reisert, B; Schmidke, W B; Grigorescu, G; Keramidas, A; Koffeman, E; Kooijman, P; Pellegrino, A; Tiecke, H; Vázquez, M; Wiggers, L; Brümmer, N; Bylsma, B; Durkin, L S; Lee, A; Ling, T Y; Allfrey, P D; Bell, M A; Cooper-Sarkar, A M; Devenish, R C E; Ferrando, J; Foster, B; Korcsak-Gorzo, K; Oliver, K; Robertson, A; Uribe-Estrada, C; Walczak, R; Bertolin, A; Dal Corso, F; Dusini, S; Longhin, A; Stanco, L; Bellan, P; Brugnera, R; Carlin, R; Garfagnini, A; Limentani, S; Oh, B Y; Raval, A; Ukleja, J; Whitmore, J J; Iga, Y; D'Agostini, G; Marini, G; Nigro, A; Cole, J E; Hart, J C; Abramowicz, H; Ingbir, R; Kananov, S; Levy, A; Stern, A; Kuze, M; Maeda, J; Hori, R; Kagawa, S; Okazaki, N; Shimizu, S; Tawara, T; Hamatsu, R; Kaji, H; Kitamura, S; Ota, O; Ri, Y D; Costa, M; Ferrero, M I; Monaco, V; Sacchi, R; Solano, A; Arneodo, M; Ruspa, M; Fourletov, S; Martin, J F; Stewart, T P; Boutle, S K; Butterworth, J M; Gwenlan, C; Jones, T W; Loizides, J H; Wing, M; Brzozowska, B; Ciborowski, J; Grzelak, G; Kulinski, P; Luzniak, P; Malka, J; Nowak, R J; Pawlak, J M; Tymieniecka, T; Ukleja, A; Zarnecki, A F; Adamus, M; Plucinski, P; Eisenberg, Y; Hochman, D; Karshon, U; Brownson, E; Danielson, T; Everett, A; Kçira, D; Reeder, D D; Ryan, P; Savin, A A; Smith, W H; Wolfe, H; Bhadra, S; Catterall, C D; Cui, Y; Hartner, G; Menary, S; Noor, U; Standage, J; Whyte, J

    2008-09-12

    Inclusive K_{S};{0}K_{S};{0} production in ep collisions at the DESY ep collider HERA was studied with the ZEUS detector using an integrated luminosity of 0.5 fb;{-1}. Enhancements in the mass spectrum were observed and are attributed to the production of f_{2}(1270)/a_{2};{0}(1320), f_{2};{'}(1525) and f_{0}(1710). Masses and widths were obtained using a fit which takes into account theoretical predictions based on SU(3) symmetry arguments, and are consistent with the Particle Data Group values. The f_{0}(1710) state, which has a mass consistent with a glueball candidate, was observed with a statistical significance of 5 standard deviations. However, if this state is the same as that seen in gammagamma-->K_{S};{0}K_{S};{0}, it is unlikely to be a pure glueball state.

  18. Performance of a 150-MW S-band Klystron

    NASA Astrophysics Data System (ADS)

    Sprehn, D.; Phillips, R. M.; Caryotakis, G.

    1995-07-01

    As part of an international collaboration, the Stanford Linear Accelerator Center (SLAC) klystron group has designed, fabricated, and tested a 60-Hz, 3-μs, 150-MW S-band klystron built for Deutsches Elektronen Synchrotron (DESY). A test diode with a 535-kV, 700-A electron beam was constructed to verify the gun operation. The first klystron was built and successfully met design specifications. The 375-MW electron beam represents a new record for SLAC accelerator klystrons in terms of voltage, current, energy, and ruggedness of design. The rf output power is a 150% increase over the S-band tubes currently used in the two-mile-long linear accelerator at SLAC. This paper discusses design issues and experimental results of the diode and klystron.

  19. Test of Two NB Superstructure Prototypes

    SciTech Connect

    Sekutowicz, J.

    2004-04-16

    An alternative layout of the TESLA linear collider [1], based on weakly coupled multi-cell superconducting structures (superstructures), significantly reduces investment cost due to a simplification in the RF system of the main accelerator. In January 1999, preparation of the beam test of the superstructure began in order to prove the feasibility of this layout. Progress in the preparation was reported frequently in Proceedings of TESLA Collaboration Meetings. Last year, two superstructures were installed in the TESLA Test Facility (TTF) linac at DESY to experimentally verify: methods to balance the accelerating gradient in a weakly coupled system, the stability of the energy gain for the entire train of bunches in macro-pulses and the damping of Higher Order Modes (HOMs). We present results of the first cold and beam test of these two Nb prototypes.

  20. Measurement and simulation of two-phase CO2 cooling in Micromegas modules for a Large Prototype of Time Projection Chamber

    NASA Astrophysics Data System (ADS)

    Bhattacharya, D. S.; Attié, D.; Colas, P.; Mukhopadhyay, S.; Majumdar, N.; Bhattacharya, S.; Sarkar, S.; Bhattacharya, A.; Ganjour, S.

    2015-08-01

    The readout electronics of a Micromegas (MM) module consume nearly 26 W of electric power, which causes the temperature of electronic board to increase upto 70 oC. Increase in temperature results in damage of electronics. Development of temperature gradient in the Time Projection Chamber (TPC) may affect precise measurement as well. Two-phase CO2 cooling has been applied to remove heat from the MM modules during two test beam experiments at DESY, Hamburg. Following the experimental procedure, a comprehensive study of the cooling technique has been accomplished for a single MM module by means of numerical simulation. This paper is focused to discuss the application of two-phase CO2 cooling to keep the temperature below 30 oC and stabilized within 0.2 oC.

  1. High-Pressure Torsion of Ti: Synchrotron characterization of phase volume fraction and domain sizes

    NASA Astrophysics Data System (ADS)

    Bolmaro, Raúl E.; Sordi, Vitor L.; Ferrante, Maurizio; Brokmeier, Heinz-Günter; Kawasaki, Megumi; Langdon, Terence G.

    2014-08-01

    Rods of grade 2 Ti were processed by Equal-Channel Angular Pressing (ECAP) (phi = 120° at 573 K) employing 2, 4 and 6 passes. The same billets were further deformed by High- Pressure Torsion (HPT) at room temperature, varying both the hydrostatic pressure (1 and 6 GPa) and the number of rotations (n = 1 and 5). The ECAP and HPT samples were studied by synchrotron radiation at DESY-Petra III GEMS line. On the ECAP samples, textures were thus determined while for both ECAP and HPT samples the measurements were further analyzed by MAUD. Domain sizes and phase volume fractions were determined as a function of the radial direction of the samples. Alpha and Omega phases were detected in different amounts depending mostly on hydrostatic pressure and shear deformation. These transition phases can be pressure-induced during HPT processing and the results of Vickers microhardness measurements were related to the processing parameters and to the amounts of these phases.

  2. Structural studies of the lipid membranes at the Siberia-2 synchrotron radiation source

    NASA Astrophysics Data System (ADS)

    Kiselev, M. A.; Ermakova, E. V.; Ryabova, N. Yu.; Nayda, O. V.; Zabelin, A. V.; Pogorely, D. K.; Korneev, V. N.; Balagurov, A. M.

    2010-05-01

    Lipid membranes are a subject of contemporary interdisciplinary studies at the junction of biology, biophysics, pharmacology, and bionanotechnology. The results of the structural studies of several types of lipid membranes by the lamellar and lateral diffraction of X-ray synchrotron radiation are presented. The experiments were performed at the Mediana and DICSI stations of the Siberia-2 synchrotron radiation source at the Russian Research Center Kurchatov Institute. The data obtained are compared with the results of studying lipid membranes at the small-angle scattering beamlines D22 and D24 at LURE (France) and at the A2 beamline at DESY (Germany). The parameters of the DICSI station are shown to meet the basic requirements for the structural study of lipid systems, which are of fundamental and applied interest.

  3. Cryogenics for the superconducting super collider: workshop proceedings

    SciTech Connect

    Not Available

    1984-01-01

    Attendance at the workshop and information meeting on Cryogenics for the SSC held at Brookhaven National Laboratory on January 17 to 19, 1984 consisted of 109 engineers and scientists from 19 industrial organizations and 18 laboratories and universities - CERN, DESY, Grenoble, KEK and Saclay were represented. About one-third of the participants were from Brookhaven National Laboratory and Fermi National Laboratory. Talks which concentrated on informing the audience of the present status of the SSC research and development activities and progress towards design of the components were given, experience with the cryogenic system of the Tevatron was reported, and a wrap-up session was held on the last day where each of the five workshop leaders gave a summary of their group's discussions and conclusions. A brief summary of these presentations is given, with the detailed information gathered by the group leaders forming the bulk of these proceedings.

  4. The Simulation Intranet Architecture

    SciTech Connect

    Holmes, V.P.; Linebarger, J.M.; Miller, D.J.; Vandewart, R.L.

    1998-12-02

    The Simdarion Infranet (S1) is a term which is being used to dcscribc one element of a multidisciplinary distributed and distance computing initiative known as DisCom2 at Sandia National Laboratory (http ct al. 1998). The Simulation Intranet is an architecture for satisfying Sandia's long term goal of providing an end- to-end set of scrviccs for high fidelity full physics simu- lations in a high performance, distributed, and distance computing environment. The Intranet Architecture group was formed to apply current distributed object technologies to this problcm. For the hardware architec- tures and software models involved with the current simulation process, a CORBA-based architecture is best suited to meet Sandia's needs. This paper presents the initial desi-a and implementation of this Intranct based on a three-tier Network Computing Architecture(NCA). The major parts of the architecture include: the Web Cli- ent, the Business Objects, and Data Persistence.

  5. DSPS in data acquisition

    SciTech Connect

    Kirsch, M.; Haeupke, T.; Oelschlaeger, R.; Struck, B.

    1997-12-31

    Off-the-shelf and customized DSP boards in different bus architectures are perfectly suited to act as building blocks for flexible and high performance data acquisition systems. Due to their architecture they can be used to enhance the performance of existing equipment as add ons, as state-of-the-art readout controllers, event builders, on-the-fly data formatters and higher level trigger processors. Applications covering the above mentioned fields with Motorolas 96002 HARC DSP in the DESY HERMES and H1 experiments, at the focal plane polarimeter at KVI and the NIST high flux neutron backscattering spectrometer will be presented. Future possibilities with VME, PCI and PMC boards based on Analog Devices SHARC DSP will be discussed. Systems on the base of Texas Instruments TMS320C6X promise to provide unprecedented performance.

  6. Recent Developments in Superconducting RF Free Electron Lasers

    SciTech Connect

    Lia Merminga

    2001-09-01

    Superconducting RF (SRF) Free Electron Lasers (FELs) worldwide are reviewed. Two examples of high performance SRF FELs are discussed in detail: First, the Tesla Test Facility (TTF) FEL at DESY, which recently demonstrated Self Amplified Spontaneous Emission (SASE) saturation at the wavelength of 98 nm, an important milestone towards X-ray FELs in the {angstrom} regime. Second, the Jefferson Lab IR FEL, which recently lased with 2.1 kW of average power while energy recovering 5 mA of average current, an important milestone towards high average power FELs and towards Energy Recovering Linacs (ERLs) in general. We discuss the scientific potential and accelerator physics challenges of both classes of SRF-driven FELs.

  7. The liberal state and the rogue agency: FDA’s regulation of drugs for mood disorders, 1950s–1970s☆

    PubMed Central

    Shorter, Edward

    2013-01-01

    The theory of the liberal state does not generally contemplate the possibility that regulatory agencies will turn into “rogues,” regulating against the interests of their clients and, indeed, the public interest. In the years between circa 1955 and 1975 this seems to have happened to one of the prime regulatory agencies of the US federal government: the Food and Drug Administration (FDA). Intent upon transforming itself from a traditional “cop” agency to a regulatory giant, the FDA campaigned systematically to bring down some safe and effective drugs. This article concentrates on hearings in the area of psychopharmacology regarding several antianxiety drugs, namely meprobamate (Miltown), chlordiazepoxide (Librium) and diazepam (Valium). In addition, from 1967 to 1973 this regulatory vengefulness occurred on a broad scale in the Drug Efficacy Study Implementation (DESI), an administrative exercise that removed from the market almost half of the psychopharmacopoeia. The article explores possible bureaucratic motives for these actions. PMID:18343498

  8. Screening of the Binding of Small Molecules to Proteins by Desorption Electrospray Ionization Mass Spectrometry Combined with Protein Microarray

    NASA Astrophysics Data System (ADS)

    Yao, Chenxi; Wang, Tao; Zhang, Buqing; He, Dacheng; Na, Na; Ouyang, Jin

    2015-11-01

    The interaction between bioactive small molecule ligands and proteins is one of the important research areas in proteomics. Herein, a simple and rapid method is established to screen small ligands that bind to proteins. We designed an agarose slide to immobilize different proteins. The protein microarrays were allowed to interact with different small ligands, and after washing, the microarrays were screened by desorption electrospray ionization mass spectrometry (DESI MS). This method can be applied to screen specific protein binding ligands and was shown for seven proteins and 34 known ligands for these proteins. In addition, a high-throughput screening was achieved, with the analysis requiring approximately 4 s for one sample spot. We then applied this method to determine the binding between the important protein matrix metalloproteinase-9 (MMP-9) and 88 small compounds. The molecular docking results confirmed the MS results, demonstrating that this method is suitable for the rapid and accurate screening of ligands binding to proteins.

  9. Executive Summary of the Workshop on Polarization and Beam Energy Measurements at the ILC

    SciTech Connect

    Aurand, B.; Bailey, I.; Bartels, C.; Blair, G.; Brachmann, A.; Clarke, J.; Deacon, L.; Duginov, V.; Ghalumyan, A.; Hartin, A.; Hauptman, J.; Helebrant, C.; Hesselbach, S.; Kafer, D.; List, J.; Lorenzon, W.; Lyapin, A.; Marchesini, I.; Melikian, R.; Monig, K.; Moeit, K.C.; /Bonn U. /Cockcroft Inst. Accel. Sci. Tech. /DESY /DESY, Zeuthen /Royal Holloway, U. of London /SLAC /Daresbury /Dubna, JINR /Yerevan Phys. Inst /Oxford U., JAI /Iowa State U. /Durham U., IPPP /Michigan U. /University Coll. London /Novosibirsk, IYF /Minsk, Inst. Phys. /Oregon U.

    2008-07-25

    This note summarizes the results of the 'Workshop on Polarization and Beam Energy Measurements at the ILC', held at DESY (Zeuthen) April 9-11 2008. The topics for the workshop included (1) physics requirements, (2) polarized sources and low energy polarimetry, (3) BDS polarimeters, (4) BDS energy spectrometers, and (5) physics-based measurements of beam polarization and beam energy from collider data. Discussions focused on the current ILC baseline program as described in the Reference Design Report (RDR), which includes physics runs at beam energies between 100 and 250 GeV, as well as calibration runs on the Z-pole. Electron polarization of P{sub e{sup -}} {approx}> 80% and positron polarization of P{sub e{sup +}} {approx}> 30% are part of the baseline configuration of the machine. Energy and polarization measurements for ILC options beyond the baseline, including Z-pole running and the 1 TeV energy upgrade, were also discussed.

  10. PIPE: A versatile photon-ion spectrometer at PETRAIII

    NASA Astrophysics Data System (ADS)

    Ricsóka, T.; Ricz, S.; Schippers, S.; Müller, A.; Klumpp, S.; Martins, M.; Flesch, R.; Mondes, V.; Rühl, E.; Schmidt, L.; Dörner, R.; Ullrich, J.; Wolf, A.

    2009-11-01

    A German research collaboration is currently setting up a versatile photon-ion spectrometer at PE-TRA III (PIPE) the new synchrotron radiation source at the DESY site in Hamburg, Germany. PIPE will be operated as a user facility at the Variable Polarization XUV beamline which will deliver some 1012 photons per second per 0.01% bandwidth in the photon energy range 250-3000 eV. The PIPE setup will allow users to study photon interactions with ionized matter in the gas phase, such as multiply charged atomic ions, small and large (bio-)molecular ions, solvate ions, and cluster ions with mass/charge ratios of up to 30 000.

  11. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

    PubMed

    Varshney, Rajeev K; Song, Chi; Saxena, Rachit K; Azam, Sarwar; Yu, Sheng; Sharpe, Andrew G; Cannon, Steven; Baek, Jongmin; Rosen, Benjamin D; Tar'an, Bunyamin; Millan, Teresa; Zhang, Xudong; Ramsay, Larissa D; Iwata, Aiko; Wang, Ying; Nelson, William; Farmer, Andrew D; Gaur, Pooran M; Soderlund, Carol; Penmetsa, R Varma; Xu, Chunyan; Bharti, Arvind K; He, Weiming; Winter, Peter; Zhao, Shancen; Hane, James K; Carrasquilla-Garcia, Noelia; Condie, Janet A; Upadhyaya, Hari D; Luo, Ming-Cheng; Thudi, Mahendar; Gowda, C L L; Singh, Narendra P; Lichtenzveig, Judith; Gali, Krishna K; Rubio, Josefa; Nadarajan, N; Dolezel, Jaroslav; Bansal, Kailash C; Xu, Xun; Edwards, David; Zhang, Gengyun; Kahl, Guenter; Gil, Juan; Singh, Karam B; Datta, Swapan K; Jackson, Scott A; Wang, Jun; Cook, Douglas R

    2013-03-01

    Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea--desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding and provide insights into both genome diversity and domestication.

  12. L-band Photocathode RF gun at KEK-STF

    NASA Astrophysics Data System (ADS)

    Sugiyama, H.; Takahashi, Y.; Hayano, H.; Urakawa, J.; Kashiwagi, S.; Isoyama, G.; Kato, R.; Sugimoto, N.; Kuriki, M.

    2011-05-01

    The superconducting RF test facility (STF) in KEK is a facility to promote R&D of the International Linear Collider (ILC) cavities and cryomodule. L-band photocathode RF gun has been developed at KEK-STF as an electron beam source for cryomodule test scheduled in autumn of 2011. The RF cavity of the gun will be operated with a 1.3 GHz RF frequency, 1 msec RF pulse width, 5 Hz repetition rate at normal conductivity. The cavity was prepared by collaborative work with DESY and FNAL, and fabricated by FNAL. The RF conditioning of the cavity has been started since April 2010. A cesium telluride thin film as a photocathode material has been adopted, and the preparation equipment for cesium telluride has been newly designed and constructed. By using this new system, a fabrication and a performance estimation of the cesium telluride thin film as a photocathode are the next step of the research.

  13. Operational Experience with the Nb/Pb SRF Photoelectron Gun

    SciTech Connect

    Kamps, T; Barday, R; Jankowiak, A; Knoblock, J; Kugeler, O; Matveenko, A N; Neumann, A; Quast, T; Rudolph, J; Schubert, S G; Volker, J; Kneisel, P; Nietubyc, R; Sekutowicz, J K; Smedley, J; Teichert, J; Volkov, V; Will, I

    2012-07-01

    SRF photoelectron guns offer the promise of high brightness, high average current beam production for the next generation of accelerator driven light sources such as free electron lasers, THz radiation sources or energy-recovery linac driven synchrotron radiation sources. In a first step a fully superconducting RF (SRF) photoelectron gun is under development by a collaboration between HZB, DESY, JLAB, BNL and NCBJ. The aim of the experiment is to understand and improve the performance of a Nb SRF gun cavity coated with a small metallic Pb cathode film on the cavity backplane. This paper describes the highlights from the commissioning and beam parameter measurements. The main focus is on lessons learned from operation of the SRF gun.

  14. TESLA & ILC Cryomodules

    SciTech Connect

    Peterson, T. J.; Weisend, II, J. G.

    2016-01-01

    The TESLA collaboration developed a unique variant of SRF cryomodule designs, the chief feature being use of the large, low pressure helium vapor return pipe as the structural support backbone of the cryomodule. Additional innovative features include all cryogenic piping within the cryomodule (no parallel external cryogenic transfer line), long strings of RF cavities within a single cryomodule, and cryomodules connected in series. Several projects, including FLASH and XFEL at DESY, LCLS-II at SLAC, and the ILC technical design have adopted this general design concept. Advantages include saving space by eliminating the external transfer line, relatively tight packing of RF cavities along the beamline due to fewer warm-cold transitions, and potentially lower costs. However, a primary disadvantage is the relative lack of independence for warm-up, replacement, and cool-down of individual cryomodules.

  15. Soft x-ray scattering using FEL radiation for probing near-solid density plasmas at few electronvolt temperatures

    SciTech Connect

    Toleikis, S; Faustlin, R R; Cao, L; Doppner, T; Dusterer, S; Forster, E; Fortmann, C; Glenzer, S H; Gode, S; Gregori, G; Irsig, R; Laarmann, T; Lee, H J; Li, B; Meiwes-Broer, K; Przystawik, A; Radcliffe, P; Redmer, R; Tavella, F; Thiele, R; Tiggesbaumker, J; Truong, N X; Uschmann, I; Zastrau, U; Tschentscher, T

    2009-03-03

    We report on soft x-ray scattering experiments on cryogenic hydrogen and simple metal targets. As a source of intense and ultrashort soft x-ray pulses we have used free-electron laser radiation at 92 eV photon energy from FLASH at DESY, Hamburg. X-ray pulses with energies up to 100 {micro}J and durations below 50 fs provide interaction with the target leading simultaneously to plasma formation and scattering. Experiments exploiting both of these interactions have been carried out, using the same experimental setup. Firstly, recording of soft x-ray inelastic scattering from near-solid density hydrogen plasmas at few electronvolt temperatures confirms the feasibility of this diagnostics technique. Secondly, the soft x-ray excitation of few electronvolt solid-density plasmas in simple metals could be studied by recording soft x-ray line and continuum emission integrated over emission times from fs to ns.

  16. Measurement of optical emission from the hydrogen plasma of the Linac4 ion source and the SPL plasma generator

    NASA Astrophysics Data System (ADS)

    Lettry, J.; Bertolo, S.; Castel, A.; Chaudet, E.; Ecarnot, J.-F.; Favre, G.; Fayet, F.; Geisser, J.-M.; Haase, M.; Habert, A.; Hansen, J.; Joffe, S.; Kronberger, M.; Lombard, D.; Marmillon, A.; Balula, J. Marques; Mathot, S.; Midttun, O.; Moyret, P.; Nisbet, D.; O'Neil, M.; Paoluzzi, M.; Prever-Loiri, L.; Arias, J. Sanchez; Schmitzer, C.; Steyaert, R. Scrivens D.; Vestergard, H.; Wilhelmsson, M.

    2011-09-01

    At CERN, a non caesiated H- ion volume source derived from the DESY ion source is being commissioned. For a proposed High Power Superconducting Proton Linac (HP-SPL), a non caesiated plasma generator was designed to operate at the two orders of magnitude larger duty factor required by the SPL. The commissioning of the plasma generator test stand and the plasma generator prototype are completed and briefly described. The 2 MHz RF generators (100 kW, 50 Hz repetition rate) was successfully commissioned; its frequency and power will be controlled by arbitrary function generators during the 1 ms plasma pulse. In order to characterize the plasma, RF-coupling, optical spectrometer, rest gas analyzer and Langmuir probe measurements will be used. Optical spectrometry allows direct comparison with the currently commissioned Linac4 H- ion source plasma. The first measurements of the optical emission of the Linac4 ion source and of the SPL plasma generator plasmas are presented.

  17. Crystallization, room-temperature X-ray diffraction and preliminary analysis of Kaposi’s sarcoma herpesvirus LANA bound to DNA

    PubMed Central

    Hellert, Jan; Krausze, Joern; Schulz, Thomas F.; Lührs, Thorsten

    2014-01-01

    The latency-associated nuclear antigen (LANA) is the latent origin-binding protein and chromatin anchor of the Kaposi’s sarcoma herpesvirus (KSHV/HHV-8) genome. Its C-terminal domain (CTD) binds sequence-specifically to the viral origin of replication, whereas the N-terminal domain links it to nucleosomes of cellular chromatin for long-term persistence in dividing host cells. Here, the crystallization and X-ray data acquisition of a mutant LANA CTD in complex with its wild-type target DNA LBS1 is described. This report describes the rational protein engineering for successful co-crystallization with DNA and X-ray diffraction data collection at room temperature on the high-brilliance third-generation synchrotron PETRA III at DESY, Germany. PMID:25372834

  18. Boiling the Vacuum with AN X-Ray Free Electron Laser

    NASA Astrophysics Data System (ADS)

    Ringwald, A.

    2004-10-01

    X-ray free electron lasers will be constructed in this decade, both at SLAC in the form of the so-called Linac Coherent Light Source as well as at DESY, where the so-called TESLA XFEL laboratory uses techniques developed for the design of the TeV energy superconducting electron-positron linear accelerator TESLA. Such X-ray lasers may allow also for high-field science applications by exploiting the possibility to focus their beams to a spot with a small radius, hopefully in the range of the laser wavelength. Along this route one obtains very large electric fields, much larger than those obtainable with any optical laser of the same power. We consider here the possibility of obtaining an electric field so high that electron-positron pairs are spontaneously produced in vacuum (Schwinger pair production) and review the prospects to verify this non-perturbative production mechanism for the first time in the laboratory.

  19. Influence of nonlinear effects on statistical properties of the radiation from SASE FEL

    NASA Astrophysics Data System (ADS)

    Saldin, E. L.; Schneidmiller, E. A.; Yurkov, M. V.

    1998-02-01

    The paper presents analysis of statistical properties of the radiation from self-amplified spontaneous emission (SASE) free-electron laser operating in nonlinear mode. The present approach allows one to calculate the following statistical properties of the SASE FEL radiation: time and spectral field correlation functions, distribution of the fluctuations of the instantaneous radiation power, distribution of the energy in the electron bunch, distribution of the radiation energy after monochromator installed at the FEL amplifier exit and the radiation spectrum. It has been observed that the statistics of the instantaneous radiation power from SASE FEL operating in the nonlinear regime changes significantly with respect to the linear regime. All numerical results presented in the paper have been calculated for the 70 nm SASE FEL at the TESLA Test Facility under construction at DESY.

  20. SASE free electron lasers as short wavelength coherent sources. From first results at 100 nm to a 1 Å X-ray laser

    NASA Astrophysics Data System (ADS)

    Treusch, R.; Feldhaus, J.

    2003-10-01

    During the last few years free electron lasers (FELs) based on self-amplified spontaneous emission (SASE) have been demonstrated at wavelengths of 12 μm [CITE], 830 nm [CITE], 530 nm [CITE] and 385 nm [CITE], and around 100 nm [CITE]. Recently, saturation has been observed in the vacuum ultraviolet (VUV) spectral region between 82 nm and 125 nm at the TESLA Test Facility (TTF) at DESY. The radiation pulses have been characterized with respect to pulse energy, statistical fluctuations, angular divergence and spectral distribution, both in the linear gain and in the saturation regime of the FEL [CITE]. The results are in good agreement with theoretical simulations, providing a solid basis for other projects aiming at still shorter wavelengths down to the 0.1 nm range [CITE].

  1. Application of FPGA technology for control of superconducting TESLA cavities in free electron laser

    NASA Astrophysics Data System (ADS)

    Pozniak, Krzysztof T.

    2006-10-01

    Contemporary fundamental research in physics, biology, chemistry, pharmacology, material technology and other uses frequently methods basing on collision of high energy particles or penetration of matter with ultra-short electromagnetic waves. Kinetic energy of involved particles, considerably greater than GeV, is generated in accelerators of unique construction. The paper presents a digest of working principles of accelerators. There are characterized research methods which use accelerators. A method to stabilize the accelerating EM field in superconducting (SC) resonant cavity was presented. An example was given of usage of TESLA cavities in linear accelerator propelling the FLASH free electron laser (FEL) in DESY, Hamburg. Electronic and photonic control system was debated. The system bases on advanced FPGA circuits and cooperating fast DSP microprocessor chips. Examples of practical solutions were described. Test results of the debated systems in the real-time conditions were given.

  2. Performance of 3-cell Seamless Niobium cavities

    SciTech Connect

    Kneisel, Peter K.; Ciovati, Gianluigi; Jelezov, I.; Singer, W.; Singer, X.

    2009-11-01

    In the last several months we have surface treated and cryogenically tested three TESLA-type 3-cell cavities, which had been manufactured at DESY as seamless assemblies by hydroforming. The cavities were completed at JLab with beam tube/flange assemblies. All three cavities performed very well after they had been post-purified with titanium at 1250C for 3 hrs. The cavities, two of which consisted of an end cell and 2 center cells and one was a center cell assembly, achieved gradients of Eacc = 32 MV/m, 34 MV/m and 35 MV/m without quenches. The performance was limited by the appearance of the “Q-drop” in the absence of field emission. This contribution reports about the various measurements undertaken with these cavities.

  3. Design and characterization of permanent magnetic solenoids for REGAE

    NASA Astrophysics Data System (ADS)

    Hachmann, M.; Flöttmann, K.; Gehrke, T.; Mayet, F.

    2016-09-01

    REGAE is a small electron linear accelerator at DESY. In order to focus short and low charged electron bunches down to a few μm permanent magnetic solenoids were designed, assembled and field measurements were done. Due to a shortage of space close to the operation area an in-vacuum solution has been chosen. Furthermore a two-ring design made of wedges has been preferred in terms of beam dynamic issues. To keep the field quality of a piecewise built magnet still high a sorting algorithm for the wedge arrangement including a simple magnetic field model has been developed and used for the construction of the magnets. The magnetic field of these solenoids has been measured with high precision and compared to simulations.

  4. The XXV International Symposium on Lattice Field Theory

    NASA Astrophysics Data System (ADS)

    Bali; Braun, Gunnar; Gattring, Vladimir; Göckeler, Christof; Schäfer, Meinulf; Weisz, Andreas; Wettig, Peter; Tilo

    Lattice 2007, the XXV International Symposium on Lattice Field Theory, was held from July 30 to August 4, 2007 at the University of Regensburg, Germany. The scientific program contained 24 plenary session talks and 338 parallel session contributions (talks and posters). The conference topics included: algorithms and machines; applications beyond QCD; chiral symmetry; hadron spectroscopy; hadron structure; nonzero temperature and density; standard model parameters and renormalization; theoretical developments; vacuum structure and confinement; weak decays and matrix elements. We gratefully acknowledge financial support by the following companies and institutions, which was essential for the success of the conference: Bull, Eurotech, IBM, Intel, Sun, DESY, GSI, FZ Jülich, Vielberth Foundation, Kneitinger.Editorial Board:Gunnar Bali, Vladimir Braun, Christof Gattringer (chairman), Meinulf Göckeler, Andreas Schäfer, Peter Weisz, Tilo Wettig

  5. Double-hadron leptoproduction in the nuclear medium.

    PubMed

    Airapetian, A; Akopov, N; Akopov, Z; Amarian, M; Andrus, A; Aschenauer, E C; Augustyniak, W; Avakian, R; Avetissian, A; Avetissian, E; Bailey, P; Belostotski, S; Bianchi, N; Blok, H P; Böttcher, H; Borissov, A; Borysenko, A; Brüll, A; Bryzgalov, V; Capiluppi, M; Capitani, G P; Ciullo, G; Contalbrigo, M; Dalpiaz, P F; Deconinck, W; De Leo, R; Demey, M; De Nardo, L; De Sanctis, E; Devitsin, E; Diefenthaler, M; Di Nezza, P; Dreschler, J; Düren, M; Ehrenfried, M; Elalaoui-Moulay, A; Elbakian, G; Ellinghaus, F; Elschenbroich, U; Fabbri, R; Fantoni, A; Felawka, L; Frullani, S; Funel, A; Gapienko, G; Gapienko, V; Garibaldi, F; Garrow, K; Gavrilov, G; Gharibyan, V; Giordano, F; Grebeniouk, O; Gregor, I M; Griffioen, K; Guler, H; Hadjidakis, C; Hartig, M; Hasch, D; Hasegawa, T; Hesselink, W H; Hillenbrand, A; Hoek, M; Holler, Y; Hommez, B; Hristova, I; Iarygin, G; Ivanilov, A; Izotov, A; Jackson, H E; Jgoun, A; Kaiser, R; Keri, T; Kinney, E; Kisselev, A; Kobayashi, T; Kopytin, M; Korotkov, V; Kozlov, V; Krauss, B; Kravchenko, P; Krivokhijine, V G; Lagamba, L; Lapikás, L; Lenisa, P; Liebing, P; Linden-Levy, L A; Lorenzon, W; Lu, J; Lu, S; Ma, B-Q; Maiheu, B; Makins, N C R; Mao, Y; Marianski, B; Marukyan, H; Masoli, F; Mexner, V; Meyners, N; Michler, T; Mikloukho, O; Miller, C A; Miyachi, Y; Muccifora, V; Murray, M; Nagaitsev, A; Nappi, E; Naryshkin, Y; Negodaev, M; Nowak, W-D; Ohsuga, H; Osborne, A; Perez-Benito, R; Pickert, N; Raithel, M; Reggiani, D; Reimer, P E; Reischl, A; Roelon, A R; Riedl, C; Rith, K; Rosner, G; Rostomyan, A; Rubacek, L; Rubin, J; Ryckbosch, D; Salomatin, Y; Sanjiev, I; Savin, I; Schäfer, A; Schnell, G; Schüler, K P; Seele, J; Seidl, R; Seitz, B; Shearer, C; Shibata, T-A; Shutov, V; Sinram, K; Stancari, M; Statera, M; Steffens, E; Steijger, J J M; Stenzel, H; Stewart, J; Stinzing, F; Streit, J; Tait, P; Tanaka, H; Taroian, S; Tchuiko, B; Terkulov, A; Trzcinski, A; Tytgat, M; Vandenbroucke, A; van der Nat, P B; van der Steenhoven, G; van Haarlem, Y; Veretennikov, D; Vikhrov, V; Vogel, C; Wang, S; Ye, Y; Ye, Z; Yen, S; Zihlmann, B; Zupranski, P

    2006-04-28

    The first measurements of double-hadron production in deep-inelastic scattering within the nuclear medium were made with the HERMES spectrometer at DESY HERA using a 27.6 GeV positron beam. By comparing data for deuterium, nitrogen, krypton, and xenon nuclei, the influence of the nuclear medium on the ratio of double-hadron to single-hadron yields was investigated. Nuclear effects on the additional hadron are clearly observed, but with little or no difference among nitrogen, krypton, or xenon, and with smaller magnitude than effects seen on previously measured single-hadron multiplicities. The data are compared with models based on partonic energy loss or prehadronic scattering and with a model based on a purely absorptive treatment of the final-state interactions. Thus, the double-hadron ratio provides an additional tool for studying modifications of hadronization in nuclear matter. PMID:16712217

  6. Measurement of the tensor structure function b1 of the deuteron.

    PubMed

    Airapetian, A; Akopov, N; Akopov, Z; Amarian, M; Ammosov, V V; Andrus, A; Aschenauer, E C; Augustyniak, W; Avakian, R; Avetissian, A; Avetissian, E; Bailey, P; Balin, D; Baturin, V; Beckmann, M; Belostotski, S; Bernreuther, S; Bianchi, N; Blok, H P; Böttcher, H; Borissov, A; Borysenko, A; Bouwhuis, M; Brack, J; Brüll, A; Bryzgalov, V; Capitani, G P; Chen, T; Chiang, H C; Ciullo, G; Contalbrigo, M; Dalpiaz, P F; De Leo, R; Demey, M; De Nardo, L; De Sanctis, E; Devitsin, E; Di Nezza, P; Dreschler, J; Düren, M; Ehrenfried, M; Elalaoui-Moulay, A; Elbakian, G; Ellinghaus, F; Elschenbroich, U; Fabbri, R; Fantoni, A; Fechtchenko, A; Felawka, L; Fox, B; Frullani, S; Gapienko, G; Gapienko, V; Garibaldi, F; Garrow, K; Garutti, E; Gaskell, D; Gavrilov, G; Gharibyan, V; Graw, G; Grebeniouk, O; Greeniaus, L G; Gregor, I M; Hafidi, K; Hartig, M; Hasch, D; Heesbeen, D; Henoch, M; Hertenberger, R; Hesselink, W H A; Hillenbrand, A; Hoek, M; Holler, Y; Hommez, B; Iarygin, G; Ivanilov, A; Izotov, A; Jackson, H E; Jgoun, A; Kaiser, R; Kinney, E; Kisselev, A; Kopytin, M; Korotkov, V; Kozlov, V; Krauss, B; Krivokhijine, V G; Lagamba, L; Lapikás, L; Laziev, A; Lenisa, P; Liebing, P; Linden-Levy, L A; Lipka, K; Lorenzon, W; Lu, H; Lu, J; Lu, S; Ma, B-Q; Maiheu, B; Makins, N C R; Mao, Y; Marianski, B; Marukyan, H; Masoli, F; Mexner, V; Meyners, N; Mikloukho, O; Miller, C A; Miyachi, Y; Muccifora, V; Nagaitsev, A; Nappi, E; Naryshkin, Y; Nass, A; Negodaev, M; Nowak, W-D; Oganessyan, K; Ohsuga, H; Pickert, N; Potashov, S; Potterveld, D H; Raithel, M; Reggiani, D; Reimer, P E; Reischl, A; Reolon, A R; Riedl, C; Rith, K; Rosner, G; Rostomyan, A; Rubacek, L; Rubin, J; Ryckbosch, D; Salomatin, Y; Sanjiev, I; Savin, I; Schäfer, A; Schill, C; Schnell, G; Schüler, K P; Seele, J; Seidl, R; Seitz, B; Shanidze, R; Shearer, C; Shibata, T-A; Shutov, V; Simani, M C; Sinram, K; Stancari, M; Statera, M; Steffens, E; Steijger, J J M; Stenzel, H; Stewart, J; Stinzing, F; Stösslein, U; Tait, P; Tanaka, H; Taroian, S; Tchuiko, B; Terkulov, A; Tkabladze, A; Trzcinski, A; Tytgat, M; Vandenbroucke, A; van der Nat, P B; van der Steenhoven, G; Vetterli, M C; Vikhrov, V; Vincter, M G; Vogel, C; Vogt, M; Volmer, J; Weiskopf, C; Wendland, J; Wilbert, J; Ye, Y; Ye, Z; Yen, S; Zihlmann, B; Zupranski, P

    2005-12-01

    The Hermes experiment has investigated the tensor spin structure of the deuteron using the 27.6 GeV/c positron beam of DESY HERA. The use of a tensor-polarized deuteron gas target with only a negligible residual vector polarization enabled the first measurement of the tensor asymmetry A(d)zz and the tensor structure function b(d)1 for average values of the Bjorken variable 0.01< <0.45 and of the negative of the squared four-momentum transfer 0.5 GeV2 < <5 GeV2. The quantities A(d)zz and b(d)1 are found to be nonzero. The rise of b(d)1 for decreasing values of x can be interpreted to originate from the same mechanism that leads to nuclear shadowing in unpolarized scattering. PMID:16384369

  7. Investigations of the Wideband Spectrum of Higher Order Modes Measured on TESLA-style Cavities at the FLASH Linac

    SciTech Connect

    Molloy, S.; Adolphsen, C.; Bane, K.; Frisch, J.; Li, Z.; May, J.; McCormick, D.; Smith, T.; Baboi, N.; Eddy, N.; Piccoli, L.; Rechenmacher, R.; Jones, R.; /Manchester U.

    2007-06-27

    Higher Order Modes (HOMs) excited by the passage of the beam through an accelerating cavity depend on the properties of both the cavity and the beam. It is possible, therefore, to draw conclusions on the inner geometry of the cavities based on observations of the properties of the HOM spectrum. A data acquisition system based on two 20 GS/s, 6 GHz scopes has been set up at the FLASH facility, DESY, in order to measure a significant fraction of the HOM spectrum predicted to be generated by the TESLA cavities used for the acceleration of its beam. The HOMs from a particular cavity at FLASH were measured under a range of known beam conditions. The dipole modes have been identified in the data. 3D simulations of different manufacturing errors have been made, and it has been shown that these simulations can predict the measured modes.

  8. ACCELERATOR PHYSICS ISSUES FOR FUTURE ELECTRON ION COLLIDERS.

    SciTech Connect

    PEGGS,S.; BEN-ZVI,I.; KEWISCH,J.; MURPHY,J.

    2001-06-18

    Interest continues to grow in the physics of collisions between electrons and heavy ions, and between polarized electrons and polarized protons [1,2,3]. Table 1 compares the parameters of some machines under discussion. DESY has begun to explore the possibility of upgrading the existing HERA-p ring to store heavy ions, in order to collide them with electrons (or positrons) in the HERA-e ring, or from TESLA [4]. An upgrade to store polarized protons in the HERA-p ring is also under discussion [1]. BNL is considering adding polarized electrons to the RHIC repertoire, which already includes heavy and light ions, and polarized protons. The authors of this paper have made a first pass analysis of this ''eRHIC'' possibility [5]. MIT-BATES is also considering electron ion collider designs [6].

  9. First Characterization of a Fully Superconducting RF Photoinjector Cavity

    SciTech Connect

    Neumann, A; Barday, R; Jankowiak, A; Kamps, T; Knobloch, J; Kugeler, O; Matveenko, A N; Quast, T; Rudolph, J; Schubert, S G; Volker, J; Kneisel, P; Nietubyc, R; Sekutowicz, J K; Smedley, J; Volkov, V; Weinberg, G; Will, I

    2011-09-01

    As a first step towards a high brightness, high average current electron source for the BERLinPro ERL a fully superconducting photo-injector was developed by HZB in collaboration with JLab, DESY and the A. Soltan Institute. This cavity-injector ensemble is made up of a 1.6-cell superconducting cavity with a superconducting lead cathode deposited on the half-cell backwall. A superconducting solenoid is used for emittance compensation. This system, including a diagnostics beamline, has been installed in the HoBiCaT facility to serve as a testbed for beam dynamics studies and to test the combination SRF cavity and superconducting solenoid. This paper summarizes the characterization of the cavity in this configuration including Q measurements, dark current tests and field-stability analyses.

  10. Direct detection of pharmaceuticals and personal care products from aqueous samples with thermally-assisted desorption electrospray ionization mass spectrometry.

    PubMed

    Campbell, Ian S; Ton, Alain T; Mulligan, Christopher C

    2011-07-01

    An ambient mass spectrometric method based on desorption electrospray ionization (DESI) has been developed to allow rapid, direct analysis of contaminated water samples, and the technique was evaluated through analysis of a wide array of pharmaceutical and personal care product (PPCP) contaminants. Incorporating direct infusion of aqueous sample and thermal assistance into the source design has allowed low ppt detection limits for the target analytes in drinking water matrices. With this methodology, mass spectral information can be collected in less than 1 min, consuming ~100 μL of total sample. Quantitative ability was also demonstrated without the use of an internal standard, yielding decent linearity and reproducibility. Initial results suggest that this source configuration is resistant to carryover effects and robust towards multi-component samples. The rapid, continuous analysis afforded by this method offers advantages in terms of sample analysis time and throughput over traditional hyphenated mass spectrometric techniques.

  11. Analysis of solids, liquids, and biological tissues using solids probe introduction at atmospheric pressure on commercial LC/MS instruments.

    PubMed

    McEwen, Charles N; McKay, Richard G; Larsen, Barbara S

    2005-12-01

    Direct analysis of samples using atmospheric pressure ionization (API) provides a more rapid method for analysis of volatile and semivolatile compounds than vacuum solids probe methods and can be accomplished on commercial API mass spectrometers. With only a simple modification to either an electrospray (ESI) or atmospheric pressure chemical ionization (APCI) source, solid as well as liquid samples can be analyzed in seconds. The method acts as a fast solids/liquid probe introduction as well as an alternative to the new direct analysis in real time (DART) and desorption electrospray ionization (DESI) methods for many compound types. Vaporization of materials occurs in the hot nitrogen gas stream flowing from an ESI or APCI probe. Ionization of the thermally induced vapors occurs by corona discharge under standard APCI conditions. Accurate mass and mass-selected fragmentation are demonstrated as is the ability to obtain ions from biological tissue, currency, and other objects placed in the path of the hot nitrogen stream.

  12. Electron beam diagnostics for a superconducting radio frequency photoelectron injector.

    PubMed

    Kamps, Thorsten; Arnold, Andre; Boehlick, Daniel; Dirsat, Marc; Klemz, Guido; Lipka, Dirk; Quast, Torsten; Rudolph, Jeniffa; Schenk, Mario; Staufenbiel, Friedrich; Teichert, Jochen; Will, Ingo

    2008-09-01

    A superconducting radio frequency (SRF) photoelectron injector is currently under construction by a collaboration of BESSY, DESY, FZD, and MBI. The project aims at the design and setup of a continuous-wave SRF injector including a diagnostics beamline for the ELBE free electron laser (FEL) and to address R&D issues on low emittance injectors for future light sources such as the BESSY FEL. Of critical importance for the injector performance is the control of the electron beam parameters. For this reason a compact diagnostics beamline is under development, serving a multitude of operation settings. In this paper the layout and the rationale of the diagnostics beamline are described. Furthermore detailed information on specific components is given, together with results from laboratory tests and data taking. PMID:19044401

  13. Performance of the first prototype of the CALICE scintillator strip electromagnetic calorimeter

    DOE PAGES

    Francis, K.; Repond, J.; Schlereth, J.; Smith, J.; Xia, L.; Baldolemar, E.; Li, J.; Park, S. T.; Sosebee, M.; White, A. P.; et al

    2014-11-01

    A first prototype of a scintillator strip-based electromagnetic calorimeter was built, consisting of 26 layers of tungsten absorber plates interleaved with planes of 45 × 10 × 3 mm³ plastic scintillator strips. Data were collected using a positron test beam at DESY with momenta between 1 and 6 GeV/c. The prototype's performance is presented in terms of the linearity and resolution of the energy measurement. These results represent an important milestone in the development of highly granular calorimeters using scintillator strip technology. A number of possible design improvements were identified, which should be implemented in a future detector of thismore » type. This technology is being developed for a future linear collider experiment, aiming at the precise measurement of jet energies using particle flow techniques.« less

  14. Performance of the first prototype of the CALICE scintillator strip electromagnetic calorimeter

    SciTech Connect

    Francis, K.; Repond, J.; Schlereth, J.; Smith, J.; Xia, L.; Baldolemar, E.; Li, J.; Park, S. T.; Sosebee, M.; White, A. P.; Yu, J.; Eigen, G.; Mikami, Y.; Watson, N. K.; Thomson, M. A.; Ward, D. R.; Benchekroun, D.; Hoummada, A.; Khoulaki, Y.; Apostolakis, J.; Dotti, A.; Folger, G.; Ivantchenko, V.; Ribon, A.; Uzhinskiy, V.; Cârloganu, C.; Gay, P.; Manen, S.; Royer, L.; Tytgat, M.; Zaganidis, N.; Blazey, G. C.; Dyshkant, A.; Lima, J. G.R.; Zutshi, V.; Hostachy, J. -Y.; Morin, L.; Cornett, U.; David, D.; Ebrahimi, A.; Falley, G.; Gadow, K.; Göttlicher, P.; Günter, C.; Hartbrich, O.; Hermberg, B.; Karstensen, S.; Krivan, F.; Krüger, K.; Lutz, B.; Morozov, S.; Morgunov, V.; Neubüser, C.; Reinecke, M.; Sefkow, F.; Smirnov, P.; Terwort, M.; Garutti, E.; Laurien, S.; Lu, S.; Marchesini, I.; Matysek, M.; Ramilli, M.; Briggl, K.; Eckert, P.; Harion, T.; Schultz-Coulon, H. -Ch.; Shen, W.; Stamen, R.; Bilki, B.; Norbeck, E.; Northacker, D.; Onel, Y.; Wilson, G. W.; Kawagoe, K.; Sudo, Y.; Yoshioka, T.; Dauncey, P. D.; Wing, M.; Salvatore, F.; Cortina Gil, E.; Mannai, S.; Baulieu, G.; Calabria, P.; Caponetto, L.; Combaret, C.; Della Negra, R.; Grenier, G.; Han, R.; Ianigro, J. -C.; Kieffer, R.; Laktineh, I.; Lumb, N.; Mathez, H.; Mirabito, L.; Petrukhin, A.; Steen, A.; Tromeur, W.; Vander Donckt, M.; Zoccarato, Y.; Calvo Alamillo, E.; Fouz, M. -C.; Puerta-Pelayo, J.; Corriveau, F.; Bobchenko, B.; Chadeeva, M.; Danilov, M.; Epifantsev, A.; Markin, O.; Mizuk, R.; Novikov, E.; Popov, V.; Rusinov, V.; Tarkovsky, E.; Besson, D.; Buzhan, P.; Ilyin, A.; Kantserov, V.; Kaplin, V.; Karakash, A.; Popova, E.; Tikhomirov, V.; Kiesling, C.; Seidel, K.; Simon, F.; Soldner, C.; Weuste, L.; Amjad, M. S.; Bonis, J.; Callier, S.; Conforti di Lorenzo, S.; Cornebise, P.; Doublet, Ph.; Dulucq, F.; Fleury, J.; Frisson, T.; van der Kolk, N.; Li, H.; Martin-Chassard, G.; Richard, F.; de la Taille, Ch.; Pöschl, R.; Raux, L.; Rouëné, J.; Seguin-Moreau, N.; Anduze, M.; Balagura, V.; Boudry, V.; Brient, J. -C.; Cornat, R.; Frotin, M.; Gastaldi, F.; Guliyev, E.; Haddad, Y.; Magniette, F.; Musat, G.; Ruan, M.; Tran, T. H.; Videau, H.; Bulanek, B.; Zacek, J.; Cvach, J.; Gallus, P.; Havranek, M.; Janata, M.; Kvasnicka, J.; Lednicky, D.; Marcisovsky, M.; Polak, I.; Popule, J.; Tomasek, L.; Tomasek, M.; Ruzicka, P.; Sicho, P.; Smolik, J.; Vrba, V.; Zalesak, J.; Belhorma, B.; Ghazlane, H.; Kotera, K.; Ono, H.; Takeshita, T.; Uozumi, S.; Jeans, D.; Chang, S.; Khan, A.; Kim, D. H.; Kong, D. J.; Oh, Y. D.; Götze, M.; Sauer, J.; Weber, S.; Zeitnitz, C.

    2014-11-01

    A first prototype of a scintillator strip-based electromagnetic calorimeter was built, consisting of 26 layers of tungsten absorber plates interleaved with planes of 45 × 10 × 3 mm³ plastic scintillator strips. Data were collected using a positron test beam at DESY with momenta between 1 and 6 GeV/c. The prototype's performance is presented in terms of the linearity and resolution of the energy measurement. These results represent an important milestone in the development of highly granular calorimeters using scintillator strip technology. A number of possible design improvements were identified, which should be implemented in a future detector of this type. This technology is being developed for a future linear collider experiment, aiming at the precise measurement of jet energies using particle flow techniques.

  15. A vision unfulfilled: The hopeful birth and painful death of the Superconducting Super Collider

    NASA Astrophysics Data System (ADS)

    Riordan, Michael

    As Europe began to approach parity with the United States in high energy physics around 1980, US physicists were becoming increasingly concerned about the future of their national program. While Europeans were pushing ahead with ambitious plans for two advanced particle colliders, LEP at CERN and HERA at DESY, the United States found itself faced by knotty problems in manufacturing the 4-T superconducting magnets required for the new Isabelle proton-proton collider at Brookhaven [1]. Its ballooning costs, which had swelled from an initial 275 million to an estimated 600 million (and counting), threatened to drain funds from the rest of the high energy physics program, including at Fermilab and SLAC. And by mid-1982, it seemed likely that physicists doing research at CERN's new proton-antiproton collider would soon discover the massive W and Z particles predicted by the Standard Model, among Isabelle's primary targets...

  16. Searches for supersymmetry at high-energy colliders

    SciTech Connect

    Feng, Jonathan L.; Grivaz, Jean-Francois; Nachtman, Jane

    2010-01-15

    This review summarizes the state of the art in searches for supersymmetry at colliders on the eve of the Large Hadron Collider era. Supersymmetry is unique among extensions of the standard model in being motivated by naturalness, dark matter, and force unification, both with and without gravity. At the same time, weak-scale supersymmetry encompasses a wide range of experimental signals that are also found in many other frameworks. Motivations for supersymmetry are recalled and the various models and their distinctive features are reviewed. Searches for neutral and charged Higgs bosons and standard-model superpartners at the high energy frontier are summarized comprehensively, considering both canonical and noncanonical supersymmetric models, and including results from the LEP collider at CERN, HERA at DESY, and the Fermilab Tevatron.

  17. Polyhydroxyanthraquinones as Quorum Sensing Inhibitors from the Guttates of Penicillium restrictum and Their Analysis by Desorption Electrospray Ionization Mass Spectrometry

    PubMed Central

    2015-01-01

    The endophytic fungus Penicillium restrictum was isolated from the stems of a milk thistle (Silybum marianum) plant. In culture, the fungus produced distinct red guttates, which have been virtually uninvestigated, particularly from the standpoint of chemistry. Hence, this study examined the chemical mycology of P. restrictum and, in doing so, uncovered a series of both known and new polyhydroxyanthraquinones (1–9). These compounds were quorum sensing inhibitors in a clinical isolate of methicillin-resistant Staphylococcus aureus (MRSA), with IC50 values ranging from 8 to 120 μM, suggesting antivirulence potential for the compounds. Moreover, the spatial and temporal distribution of the polyhydroxyanthraquinones was examined in situ via desorption electrospray ionization–mass spectrometry (DESI-MS) imaging, demonstrating the first application of this technique to a guttate-forming fungus and revealing both the concentration of secondary metabolites at the ventral surface of the fungus and their variance in colonies of differing ages. PMID:24911880

  18. Heavy quark production in photon-Pomeron interactions at high energies

    SciTech Connect

    Machado, M. M.; Goncalves, V. P.

    2013-03-25

    The diffractive heavy quark cross sections are estimated considering photon-Pomeron interactions in hadron - hadron at RHIC, Tevatron, and CERN LHC energies. We assume the validity of the hard diffractive factorization and calculate the charm and bottom total cross sections and rapidity distributions using the diffractive parton distribution functions of the Pomeron obtained by the H1 Collaboration at DESY-HERA. Such processes are sensitive to the gluon content of the Pomeron at high energies and are a good place to constrain the behavior of this distribution. We also compare our predictions with those obtained using the dipole model, and verify that these processes are a good test of the different mechanisms for heavy quarks diffractive production at hadron colliders.

  19. Performance Results of Assembled Sensor Plane Prototypes for Special Forward Calorimeters at Future E+E Colliders

    NASA Astrophysics Data System (ADS)

    Novgorodova, O.; Aguilar, J. A.; Kulis, S.; Zawiejski, L.; Chrzaszcz, M.; Henschel, H.; Lohmann, W.; Schuwalow, S.; Afanaciev, K.; Ignatenko, A.; Kollowa, S.; Levy, I.; Idzik, M.

    2012-08-01

    The FCAL Collaboration prepared two sensor plane prototypes for the Luminosity Calorimeter (LumiCal) and Beam Calorimeter (BeamCal) for a future linear collider detector. For both several challenges appeared. The luminosity measurement has to be done with a precision of 10-3, requiring LumiCal to be a precision device. BeamCal has to operate in a harsh radiation environment and needs radiation hard sensors. Two sensor technologies are considered - Si sensors for LumiCal and GaAs:Cr for BeamCal. A full chain comprising a sensor, fan-out and front-end ASIC was successfully studied in the lab and in a 4.5 GeV electron beam at DESY. Performance parameters like Charge Collection Efficiency (CCE), the Signal to Noise ratio (SIN) were measured. In a second beam test the readout is completed by a multi-channel ADC chip and data concentrator.

  20. European marketable grain legume seeds: Further insight into phenolic compounds profiles.

    PubMed

    Magalhães, Sara C Q; Taveira, Marcos; Cabrita, Ana R J; Fonseca, António J M; Valentão, Patrícia; Andrade, Paula B

    2017-01-15

    Twenty-nine mature raw varieties of grain legume seeds (chickpeas, field peas, faba beans, common vetch and lupins) produced in Europe were investigated for their phenolic profile by means of high performance liquid chromatography coupled to diode array detection (HPLC-DAD). To the best of our knowledge, this study reported for the first time the phenolic composition of mature raw seeds of chickpea type Desi, field pea and common vetch. Phenolic acids were predominant compounds in chickpeas, field peas and common vetch compared to flavonoids, whereas the opposite was observed for lupin seeds. Yellow lupins presented the highest levels of total phenolic compounds followed by narrow-leafed lupins (in average 960 and 679mg/kg, dry basis, respectively), whereas Kabuli chickpeas got the lowest ones (in average 47mg/kg, dry basis). Principal component analysis revealed that flavones and total levels of phenolic compounds were responsible for nearly 51% of total data variability. PMID:27542465

  1. Compound focusing mirror and X-ray waveguide optics for coherent imaging and nano-diffraction.

    PubMed

    Salditt, Tim; Osterhoff, Markus; Krenkel, Martin; Wilke, Robin N; Priebe, Marius; Bartels, Matthias; Kalbfleisch, Sebastian; Sprung, Michael

    2015-07-01

    A compound optical system for coherent focusing and imaging at the nanoscale is reported, realised by high-gain fixed-curvature elliptical mirrors in combination with X-ray waveguide optics or different cleaning apertures. The key optical concepts are illustrated, as implemented at the Göttingen Instrument for Nano-Imaging with X-rays (GINIX), installed at the P10 coherence beamline of the PETRA III storage ring at DESY, Hamburg, and examples for typical applications in biological imaging are given. Characteristic beam configurations with the recently achieved values are also described, meeting the different requirements of the applications, such as spot size, coherence or bandwidth. The emphasis of this work is on the different beam shaping, filtering and characterization methods.

  2. DATA REVIEW: A compilation of data on hadronic total cross sections in e+e- interactions

    NASA Astrophysics Data System (ADS)

    Whalley, M. R.

    2003-12-01

    A comprehensive compilation of experimental data on total hadronic cross sections, and R ratios, in e+e- interactions is presented. Published data from the Novosibirsk, Orsay, Frascati, SLAC, CORNELL, DESY, KEK and CERN e+e- colliders on both exclusive and inclusive final particle states are included from threshold energies to the highest LEP energies. The data are presented in tabular form supplemented by compilation plots of different exclusive final particle states and of different energy regions. All the data in this review, together with data on a wide variety of other reactions, can be found in, and retrieved from, the Durham HEP Databases on the World Wide Web http://durpdg.dur.ac.uk/HEPDATA.

  3. Free-electron laser multiplex driven by a superconducting linear accelerator.

    PubMed

    Plath, Tim; Amstutz, Philipp; Bödewadt, Jörn; Brenner, Günter; Ekanayake, Nagitha; Faatz, Bart; Hacker, Kirsten; Honkavaara, Katja; Lazzarino, Leslie Lamberto; Lechner, Christoph; Maltezopoulos, Theophilos; Scholz, Matthias; Schreiber, Siegfried; Vogt, Mathias; Zemella, Johann; Laarmann, Tim

    2016-09-01

    Free-electron lasers (FELs) generate femtosecond XUV and X-ray pulses at peak powers in the gigawatt range. The FEL user facility FLASH at DESY (Hamburg, Germany) is driven by a superconducting linear accelerator with up to 8000 pulses per second. Since 2014, two parallel undulator beamlines, FLASH1 and FLASH2, have been in operation. In addition to the main undulator, the FLASH1 beamline is equipped with an undulator section, sFLASH, dedicated to research and development of fully coherent extreme ultraviolet photon pulses using external seed lasers. In this contribution, the first simultaneous lasing of the three FELs at 13.4 nm, 20 nm and 38.8 nm is presented. PMID:27577757

  4. Transverse-target-spin asymmetry in exclusive ω -meson electroproduction. The HERMES Collaboration

    NASA Astrophysics Data System (ADS)

    Airapetian, A.; Akopov, N.; Akopov, Z.; Aschenauer, E. C.; Augustyniak, W.; Avetissian, A.; Belostotski, S.; Blok, H. P.; Borissov, A.; Bryzgalov, V.; Capitani, G. P.; Ciullo, G.; Contalbrigo, M.; Dalpiaz, P. F.; Deconinck, W.; De Leo, R.; De Sanctis, E.; Diefenthaler, M.; Di Nezza, P.; Düren, M.; Elbakian, G.; Ellinghaus, F.; Felawka, L.; Frullani, S.; Gabbert, D.; Gapienko, G.; Gapienko, V.; Gharibyan, V.; Giordano, F.; Gliske, S.; Hasch, D.; Hoek, M.; Holler, Y.; Ivanilov, A.; Jackson, H. E.; Joosten, S.; Kaiser, R.; Karyan, G.; Keri, T.; Kinney, E.; Kisselev, A.; Korotkov, V.; Kozlov, V.; Krivokhijine, V. G.; Lagamba, L.; Lapikás, L.; Lehmann, I.; Lenisa, P.; Lorenzon, W.; Ma, B.-Q.; Manaenkov, S. I.; Mao, Y.; Marianski, B.; Marukyan, H.; Miyachi, Y.; Movsisyan, A.; Muccifora, V.; Naryshkin, Y.; Nass, A.; Negodaev, M.; Nowak, W.-D.; Pappalardo, L. L.; Perez-Benito, R.; Petrosyan, A.; Reimer, P. E.; Reolon, A. R.; Riedl, C.; Rith, K.; Rosner, G.; Rostomyan, A.; Rubin, J.; Ryckbosch, D.; Salomatin, Y.; Schnell, G.; Seitz, B.; Shibata, T.-A.; Statera, M.; Steffens, E.; Steijger, J. J. M.; Stinzing, F.; Taroian, S.; Terkulov, A.; Truty, R.; Trzcinski, A.; Tytgat, M.; Van Haarlem, Y.; Van Hulse, C.; Vikhrov, V.; Vilardi, I.; Vogel, C.; Wang, S.; Yaschenko, S.; Yen, S.; Zihlmann, B.; Zupranski, P.

    2015-12-01

    Hard exclusive electroproduction of ω mesons is studied with the HERMES spectrometer at the DESY laboratory by scattering 27.6 GeV positron and electron beams off a transversely polarized hydrogen target. The amplitudes of five azimuthal modulations of the single-spin asymmetry of the cross section with respect to the transverse proton polarization are measured. They are determined in the entire kinematic region as well as for two bins in photon virtuality and momentum transfer to the nucleon. Also, a separation of asymmetry amplitudes into longitudinal and transverse components is done. These results are compared to a phenomenological model that includes the pion pole contribution. Within this model, the data favor a positive π ω transition form factor.

  5. European marketable grain legume seeds: Further insight into phenolic compounds profiles.

    PubMed

    Magalhães, Sara C Q; Taveira, Marcos; Cabrita, Ana R J; Fonseca, António J M; Valentão, Patrícia; Andrade, Paula B

    2017-01-15

    Twenty-nine mature raw varieties of grain legume seeds (chickpeas, field peas, faba beans, common vetch and lupins) produced in Europe were investigated for their phenolic profile by means of high performance liquid chromatography coupled to diode array detection (HPLC-DAD). To the best of our knowledge, this study reported for the first time the phenolic composition of mature raw seeds of chickpea type Desi, field pea and common vetch. Phenolic acids were predominant compounds in chickpeas, field peas and common vetch compared to flavonoids, whereas the opposite was observed for lupin seeds. Yellow lupins presented the highest levels of total phenolic compounds followed by narrow-leafed lupins (in average 960 and 679mg/kg, dry basis, respectively), whereas Kabuli chickpeas got the lowest ones (in average 47mg/kg, dry basis). Principal component analysis revealed that flavones and total levels of phenolic compounds were responsible for nearly 51% of total data variability.

  6. Electron beam diagnostics for a superconducting radio frequency photoelectron injector

    SciTech Connect

    Kamps, Thorsten; Boehlick, Daniel; Dirsat, Marc; Lipka, Dirk; Quast, Torsten; Rudolph, Jeniffa; Schenk, Mario; Arnold, Andre; Staufenbiel, Friedrich; Teichert, Jochen; Klemz, Guido; Will, Ingo

    2008-09-15

    A superconducting radio frequency (SRF) photoelectron injector is currently under construction by a collaboration of BESSY, DESY, FZD, and MBI. The project aims at the design and setup of a continuous-wave SRF injector including a diagnostics beamline for the ELBE free electron laser (FEL) and to address R and D issues on low emittance injectors for future light sources such as the BESSY FEL. Of critical importance for the injector performance is the control of the electron beam parameters. For this reason a compact diagnostics beamline is under development, serving a multitude of operation settings. In this paper the layout and the rationale of the diagnostics beamline are described. Furthermore detailed information on specific components is given, together with results from laboratory tests and data taking.

  7. A Tony Thomas-inspired guide to INSPIRE

    NASA Astrophysics Data System (ADS)

    O'Connell, Heath B.

    2010-07-01

    The SPIRES database was created in the late 1960s to catalogue the high energy physics preprints received by the SLAC Library. In the early 1990s it became the first database on the web and the first website outside of Europe. Although indispensible to the HEP community, its aging software infrastructure is becoming a serious liability. In a joint project involving CERN, DESY, Fermilab and SLAC, a new database, INSPIRE, is being created to replace SPIRES using CERN's modern, open-source Invenio database software. INSPIRE will maintain the content and functionality of SPIRES plus many new features. I describe this evolution from the birth of SPIRES to the current day, noting that the career of Tony Thomas spans this timeline.

  8. Two-photon exchange in elastic ep scattering and the status of the OLYMPUS experiment

    NASA Astrophysics Data System (ADS)

    Hasell, Douglas; Olympus Collaboration

    2014-09-01

    Two-photon exchange in elastic ep scattering is believed to explain the observed discrepancy in the proton electric to magnetic form factor ratio, μpGEp /GMp , measured by Rosenbluth separation and by polarization transfer methods. To quantitatively determine the contribution of two-photon exchange to elastic scattering the OLYMPUS experiment was proposed and operated at the DESY laboratory in Hamburg, Germany to measure the ratio in the elastic scattering cross sections, σe+ p /σe- p . The OLYMPUS experiment used the positron and electron beams of the DORIS storage ring at a beam energy of 2.01 GeV incident on a windowless, internal, hydrogen gas target. A left/right symmetric detector measured the rates for elastic scattering over a broad kinematic range together with a redundant set of luminosity monitors. Approximately 4.45 fb-1 of integrated luminosity was collected. The current status of the OLYMPUS analysis will be presented.

  9. An electron beam polarimeter based on scattering from a windowless, polarized hydrogen gas target

    NASA Astrophysics Data System (ADS)

    Bernauer, Jan; Milner, Richard

    2013-11-01

    Here we present the idea to develop a precision polarimeter for low energy, intense polarized electron beams using a windowless polarized hydrogen gas cell fed by an atomic beam source. This technique would use proven technology used successfully in both the electron scattering experiments: HERMES with 27 GeV electron and positron beams at DESY, and BLAST with 850 MeV electron beams at MIT-Bates. At 100 MeV beam energy, both spin-dependent Mo/ller and elastic electron-proton scattering processes have a high cross section and sizable spin asymmetries. The concept is described and estimates for realistic rates for elastic electron-proton scattering and Mo/ller scattering are presented. A number of important issues which affect the ultimate systematic uncertainty are identified.

  10. Implementation of the Timepix ASIC in the Scalable Readout System

    NASA Astrophysics Data System (ADS)

    Lupberger, M.; Desch, K.; Kaminski, J.

    2016-09-01

    We report on the development of electronics hardware, FPGA firmware and software to provide a flexible multi-chip readout of the Timepix ASIC within the framework of the Scalable Readout System (SRS). The system features FPGA-based zero-suppression and the possibility to read out up to 4×8 chips with a single Front End Concentrator (FEC). By operating several FECs in parallel, in principle an arbitrary number of chips can be read out, exploiting the scaling features of SRS. Specifically, we tested the system with a setup consisting of 160 Timepix ASICs, operated as GridPix devices in a large TPC field cage in a 1 T magnetic field at a DESY test beam facility providing an electron beam of up to 6 GeV. We discuss the design choices, the dedicated hardware components, the FPGA firmware as well as the performance of the system in the test beam.

  11. U.C. Davis particle physics research. Final technical progress report, March 1, 1989--August 31, 1992

    SciTech Connect

    1992-12-31

    During the period of this contract, the participants carried out theoretical and experimental researches in high energy particle physics. The experimental group has been working at Fermilab studying the collisions of high energy hadrons on fixed targets; at the KEK laboratory in Japan participating in the AMY collaboration at the high energy electron-positron collider, Tristan; at the DESY laboratory in Germany participating in the H1 collaboration at the newly commissioned electron-proton collider, Hera; and in collaboration with LBL on pixel detector design for the SSC, while waiting for high luminosity running to start at PEP. The theoretical group has been engaged in phenomenological studies of high energy interactions, particularly those associated with the higgs field and various aspects of symmetry breaking, heavy flavor decays and CP noninvariance, super symmetry, Yang-Mills theory and electroweak symmetry breaking. Lattice gauge calculations on finite temperature phase transitions have also been under study, as well as work on string theory.

  12. /J/ψ plus dijet associated production in two-photon collisions

    NASA Astrophysics Data System (ADS)

    Klasen, M.; Kniehl, B. A.; Mihaila, L.; Steinhauser, M.

    2001-08-01

    We study the production of a J/ ψ meson in association with one or two jets in γγ collisions concentrating on the direct-photon contribution, which is expected to be dominant for large J/ ψ-meson transverse momentum and/or large dijet invariant mass. We work at leading order in the factorization formalism of nonrelativistic QCD and include all relevant colour-octet processes. We present distributions in J/ ψ-meson transverse momentum and rapidity appropriate for CERN LEP2, a future e+e- linear collider, and a possible γγ collider mode of the latter. In the case of the e+e- linear collider, we assume the beamstrahlung spectrum appropriate for DESY TESLA.

  13. TE/TM alternating direction scheme for wake field calculation in 3D

    NASA Astrophysics Data System (ADS)

    Zagorodnov, Igor; Weiland, Thomas

    2006-03-01

    In the future, accelerators with very short bunches will be used. It demands developing new numerical approaches for long-time calculation of electromagnetic fields in the vicinity of relativistic bunches. The conventional FDTD scheme, used in MAFIA, ABCI and other wake and PIC codes, suffers from numerical grid dispersion and staircase approximation problem. As an effective cure of the dispersion problem, a numerical scheme without dispersion in longitudinal direction can be used as it was shown by Novokhatski et al. [Transition dynamics of the wake fields of ultrashort bunches, TESLA Report 2000-03, DESY, 2000] and Zagorodnov et al. [J. Comput. Phys. 191 (2003) 525]. In this paper, a new economical conservative scheme for short-range wake field calculation in 3D is presented. As numerical examples show, the new scheme is much more accurate on long-time scale than the conventional FDTD approach.

  14. Charmonium production in polarized high-energy collisions

    NASA Astrophysics Data System (ADS)

    Klasen, M.; Kniehl, B. A.; Mihaila, L. N.; Steinhauser, M.

    2003-08-01

    We investigate the inclusive production of prompt J/ψ mesons in polarized hadron-hadron, photon-hadron, and photon-photon collisions in the factorization formalism of nonrelativistic quantum chromodynamics (NRQCD) providing all contributing partonic cross sections in analytic form. In the case of photoproduction, we also include the resolved-photon contributions. We present numerical results appropriate for BNL RHIC-Spin, the approved SLAC fixed-target experiment E161, and the e+e- and γγ modes of DESY TESLA. Specifically, we assess the feasibility to access the spin-dependent parton distributions in the polarized proton and photon. We also point out that preliminary data on J/ψ inclusive production taken by the PHENIX Collaboration in unpolarized proton-proton collisions at RHIC tend to favor the NRQCD factorization hypothesis, while they significantly overshoot the theoretical prediction of the color-singlet model at large values of transverse momentum.

  15. Latest Results on Cavity Gradient and Input RF Stability at FLASH/TTF Facility

    SciTech Connect

    Pei, Shilun; Adolphsen, Chris E.; Carwardine, John; Walker, Nicholas John; /DESY

    2010-08-25

    The FLASH L-band (1.3 GHz) superconducting accelerator facility at DESY has a Low Level RF (LLRF) system that is similar to that envisioned for ILC. This system has extensive monitoring capability and was used to gather performance data relevant to ILC. Recently, waveform data were recorded with both beam on and off for three, 8-cavity cryomodules to evaluate the input RF and cavity gradient stability and study the rf overhead required to achieve constant gradient during the 800 {micro}s pulses. In this paper, we present the recent experimental results and discuss the pulse-to-pulse input rf and cavity gradient stability for both the beam on and off cases. In addition, a model of the gradient variation observed in the beam off case will be described.

  16. Heavy Quark Production in ep Collisions at HERA

    SciTech Connect

    Bloch, I.

    2006-11-17

    Collisions of electrons with protons at a centre-of-mass energy of 318 GeV are being recorded by the two experiments H1 and ZEUS at the ep accelerator HERA at DESY, Hamburg (Germany). Measurements involving beauty and charm quarks, performed by these experiments, provide a good environment to test perturbative QCD predictions as the large quark mass supplies a hard scale. Recent measurements of beauty and charm production in ep collisions are presented here. QCD predictions at next-to-leading order are found to generally agree with the measurements. Beauty measurements however are sometimes slightly higher than the predicted cross sections. Beauty and charm contributions to the proton structure were also measured and are well described by QCD predictions.

  17. Beam dynamics simulations of the NML photoinjector at Fermilab

    SciTech Connect

    Piot, P.; Sun, Y.-E.; Church, M.; /Fermilab

    2010-08-01

    Fermilab is currently constructing a superconducting RF (SRF) test linear accelerator at the New Muon Lab (NML). Besides testing SRF accelerating modules for ILC and Project-X, NML will also eventually support a variety of advanced accelerator R&D experiments. The NML incorporates a 40 MeV photoinjector capable of providing electron bunches with variable parameters. The photoinjector is based on the 1+1/2 cell DESY-type gun followed by two superconducting cavities. It also includes a magnetic bunch compressor, a round-to-flat beam transformer and a low-energy experimental area for beam physics experiments and beam diagnostics R&D. In this paper, we explore, via beam dynamics simulations, the performance of the photoinjector for different operating scenarios.

  18. Design of cold compressor systems in terms of operational and economical aspects

    NASA Astrophysics Data System (ADS)

    Decker, L.; Ueresin, C.; Treite, P.

    2015-12-01

    In the past, cooling at 2 K used to be an exotic application in large scale cryogenics. The required sub-atmospheric helium bath was established with the help of one of the following two technical approaches - rough vacuum pumping at ambient temperature or turbo compression at cryogenic temperature - ora combination of both. The aforementioned approaches are still being applied, but the optimum distribution between warm and cold stages is not always obvious. In the last few years, 2 K cooling became a new state-of-the-art in the fields of experimental and applied physics. Standardisation of the machinery and its control significantly reduced commissioning time which has clearly been demonstrated during start-up of refrigeration plants such as Fermilab and DESY. Thus, the technological readiness of cold compressors has successfully been proven. This paper presents criteria for the optimisation of a cold compressor system under operational and economical aspects depending on the required 2 K cooling capacity.

  19. Development of Quiet Honeycomb Panels

    NASA Technical Reports Server (NTRS)

    Palumbo, Daniel L.; Klos, Jacob

    2009-01-01

    Sandwich honeycomb composite panels are lightweight and strong, and, therefore, provide a reasonable alternative to the aluminum ring framelstringer architecture currently used for most aircraft airframes. The drawback to honeycomb panels is that they radiate noise into the aircraft cabin very efficiently provoking the need for additional sound treatment which adds weight and reduces the material's cost advantage. A series of honeycomb panels were made which incorporated different design strategies aimed at reducing the honeycomb panels' radiation efficiency while at the same time maintaining its strength. The majority of the desi gns were centered around the concept of creatin g areas of reduced stiffness in the panel by adding voids and recesses to the core. The effort culminated with a reinforced./recessed panel which had 6 dB higher transmission loss than the baseline solid core panel while maintaining comparable strength.

  20. Experimental studies of pion-nucleus and nucleon-nucleus interactions at intermediate energies. Progress report, April 1, 1991--March 31, 1994

    SciTech Connect

    1993-09-30

    This report summarizes the work on experimental research in intermediate energy nuclear physics carried out at New Mexico State University in 1991-94 under a grant from the U.S. Department of Energy. Most of these studies involved investigations of various pion-nucleus interactions and nucleon-nucleus charge-exchange reactions. The work was carried out with the LAMPF accelerator at the Los Alamos National Laboratory and the cyclotrons at the Paul Scherrer Institute (PSI) near Zurich, Switzerland, at Indiana University (IUCF), and at TRIUMF in Vancouver, Canada, as collaborative efforts among several laboratories and universities. We have also worked on plans and preparations for new experiments involving studies of the quark structure of nucleons and nuclei, which would be carried out at Fermilab (FNAL), near Chicago, and at the HERA facility at the DESY laboratory in Hamburg, Germany. The NMSU personnel included two faculty members, five postdoctoral research associates, nine graduate students, and one undergraduate student.

  1. The Role of INSPIRE in HEP Data Preservation Efforts

    SciTech Connect

    Brooks, Travis C.; /SLAC

    2010-06-11

    INSPIRE is a new community resource for HEP literature and associated information. It is based on the combination of SPIRES content and features and the powerful Invenio software developed at CERN. The INSPIRE service will come online in fall of 2009, and be run by CERN, DESY, Fermilab and SLAC. Data preservation, to be successful, must not only preserve the data, but must also organize it and allow it to be found by those who would make use of it, and resources such as INSPIRE are ideally positioned and ready to provide this organization and context. In addition, INSPIRE will soon be ready to provide storage of smaller datasets, such as high-level analysis objects, as stand-alone objects placed in the repository or as objects associated with an analysis paper. This small project could pave the way towards the context and organization which is one piece of the infrastructure needed for all levels of data preservation.

  2. Grating-based tomography of human tissues

    NASA Astrophysics Data System (ADS)

    Müller, Bert; Schulz, Georg; Mehlin, Andrea; Herzen, Julia; Lang, Sabrina; Holme, Margaret; Zanette, Irene; Hieber, Simone; Deyhle, Hans; Beckmann, Felix; Pfeiffer, Franz; Weitkamp, Timm

    2012-07-01

    The development of therapies to improve our health requires a detailed knowledge on the anatomy of soft tissues from the human body down to the cellular level. Grating-based phase contrast micro computed tomography using synchrotron radiation provides a sensitivity, which allows visualizing micrometer size anatomical features in soft tissue without applying any contrast agent. We show phase contrast tomography data of human brain, tumor vessels and constricted arteries from the beamline ID 19 (ESRF) and urethral tissue from the beamline W2 (HASYLAB/DESY) with micrometer resolution. Here, we demonstrate that anatomical features can be identified within brain tissue as well known from histology. Using human urethral tissue, the application of two photon energies is compared. Tumor vessels thicker than 20 μm can be perfectly segmented. The morphology of coronary arteries can be better extracted in formalin than after paraffin embedding.

  3. CONSTRAINTS ON IONIZING PHOTON PRODUCTION FROM THE LARGE-SCALE Lyα FOREST

    SciTech Connect

    Pontzen, Andrew; Peiris, Hiranya; Bird, Simeon; Verde, Licia

    2014-09-10

    Recent work has shown that the z ≅ 2.5 Lyα forest on large scales encodes information about the galaxy and quasar populations that keep the intergalactic medium photoionized. We present the first forecasts for constraining the populations with data from current and next-generation surveys. At a minimum, the forest should tell us whether galaxies or, conversely, quasars dominate the photon production. The number density and clustering strength of the ionizing sources might be estimated to sub-10% precision with a DESI-like survey if degeneracies (e.g., with the photon mean-free-path, small-scale clustering power normalization, and potentially other astrophysical effects) can be broken by prior information. We demonstrate that when inhomogeneous ionization is correctly handled, constraints on dark energy do not degrade.

  4. The Mayall z-band Legacy Survey

    NASA Astrophysics Data System (ADS)

    Silva, David R.; Blum, Robert D.; Allen, Lori; Dey, Arjun; Schlegel, David J.; Lang, Dustin; Moustakas, John; Meisner, Aaron M.; Valdes, Francisco; Patej, Anna; Myers, Adam D.; Sprayberry, David; Saha, Abi; Olsen, Knut A.; Safonova, Sasha; Yang, Qian; Burleigh, Kaylan J.; MzLS Team

    2016-06-01

    The Mayall z-band Legacy Survey (MzLS) is conducting a deep z-band imaging survey covering 5000 square degrees in the north Galactic cap as part of the Legacy Survey, which is associated with the Dark Energy Spectroscopic Instrument (DESI) redshift survey. The Legacy Survey covers 14000 square degrees in the g, r, and z bands and is being executed on the Blanco 4-m, Mayall 4-m, and Bok 2.3-m telescopes. The MzLS footprint will be observed in the g and r bands using the Bok 2.3-m telescope also on Kitt Peak. The Beijing Arizona Sky Survey (BASS) is being conducted by a parallel team from Beijing and the University of Arizona. MzLS will cover the sky north of declination 30 degrees and reach a depth of z=23.0. The survey began in January 2016 and will run through June 2017 comprising approximately 230 nights on the Mayall telescope. The data are being obtained with an upgraded Mosaic camera that deploys with newred-sensitive CCDs from Lawrence Berkeley Lab (LBL) whose throughput is in excess of 80% at 8000 to approximately 9800 Angstrom. The upgrade project was a collaboration of Yale, LBL, and NOAO. MzLS images are public as soon as they are taken and delivered to the NOAO archive. Catalogs based on Tractor photometry for all available Legacy Survey images are released soon after they are constructed and MzLS sources will be included in next release planned for summer 2016. The Dark Energy Spectroscopic Instrument (DESI) will observe 30+ million galaxies and quasars in a 14,000 square degree extragalactic footprint. The targeting in that footprint will be provided by a combination of these MzLS data, DECam data from the DECam Legacy Survey, and data from the BASS survey.

  5. Target allocation yields for massively multiplexed spectroscopic surveys with fibers

    SciTech Connect

    Saunders, Will; Smedley, Scott; Gillingham, Peter; Forero-Romero, Jaime E.; Jouvel, Stephanie; Nord, Brian

    2014-08-05

    We present Simulated Annealing fiber-to-target allocation simulations for the proposed DESI and 4MOST massively multiplexed spectroscopic surveys, and for both Poisson and realistically clustered mock target samples. We simulate both Echidna and theta-phi actuator designs, including the restrictions caused by the physical actuator characteristics during repositioning. For DESI, with theta-phi actuators, used in 5 passes over the sky for a mock ELG/LRG/QSO sample, with matched fiber and target densities, a total target allocation yield of 89.3% was achieved, but only 83.7% for the high-priority Ly-alpha QSOs. If Echidna actuators are used with the same pitch and number of passes, the yield increases by 5.7% and 16% respectively. Echidna also allows a factor-of-two increase in the number of close Ly-alpha QSO pairs that can be observed. Echidna spine tilt causes a variable loss of throughput, with average loss being the same as the loss at the rms tilt. With a natural tilt minimization scheme, we find an rms tilt always close to 0.58 x maximum. There is an additional but much smaller defocus loss, equivalent to an average defocus of 30microns. These tilt losses offset the gains in yield for Echidna, but because the survey strategy is driven by the higher priority targets, a clear survey speed advantage remains. For 4MOST, high and low latitude sample mock catalogs were supplied by the 4MOST team, and allocations were carried out with the proposed Echidna-based positioner geometry. At high latitudes, the resulting target completeness was 85.3% for LR targets and 78.9% for HR targets. At low latitude, the target completeness was 93.9% for LR targets and 71.2% for HR targets.

  6. Molecular characterization of S- and N-containing organic constituents in ambient aerosols by negative ion mode high-resolution Nanospray Desorption Electrospray Ionization Mass Spectrometry: CalNex 2010 field study

    NASA Astrophysics Data System (ADS)

    O'Brien, Rachel E.; Laskin, Alexander; Laskin, Julia; Rubitschun, Caitlin L.; Surratt, Jason D.; Goldstein, Allen H.

    2014-11-01

    Samples of ambient aerosols from the 2010 California Research at the Nexus of Air Quality and Climate Change (CalNex) field study were analyzed using negative ion mode Nanospray Desorption Electrospray Ionization High-Resolution Mass Spectrometry (nano-DESI/MS). Four samples per day (6 h each) were collected in Bakersfield, CA on 20-24 June. Four characteristic groups were identified: molecules composed of carbon, hydrogen, and oxygen only (CHO), sulfur- (CHOS), nitrogen- (CHON), and both nitrogen- and sulfur-containing organics (CHONS). The chemical formula and elemental ratios were consistent with the presence of organonitrates, organosulfate, and nitroxy organosulfates in the negative ion mode mass spectra. The number of observed CHO compounds increased in the afternoon samples, suggesting photochemical processing as a source. The average number of CHOS compounds had the smallest changes during the day, consistent with a more broadly distributed source. Both of the nitrogen-containing groups (CHONS and CHON) had greater numbers of compounds in the early morning (midnight to 6 A.M.) and night (6 P.M. to midnight) samples, respectively, consistent with nitrate radical chemistry as a likely source for those compounds. Most of the compounds were found in submicron particles. The size distribution of the number of CHON compounds was bimodal, potentially indicating two types of sources. We conclude that the majority of the compounds observed were secondary in nature with both biogenic and anthropogenic sources. These data are complementary to previous results from positive ion mode nano-DESI/MS analysis of a subset of the same samples providing a more complete view of aerosol chemical composition at Bakersfield.

  7. Characterization of the Cathode Electrolyte Interface in Lithium Ion Batteries by Desorption Electrospray Ionization Mass Spectrometry.

    PubMed

    Liu, Yao-Min; G Nicolau, Bruno; Esbenshade, Jennifer L; Gewirth, Andrew A

    2016-07-19

    The solid electrolyte interface (SEI) formed via electrolyte decomposition on the anode of lithium ion batteries is largely responsible for the stable cycling of conventional lithium ion batteries. Similarly, there is a lesser-known analogous layer on the cathode side of a lithium ion battery, termed the cathode electrolyte interface (CEI), whose composition and role are debated. To confirm the existence and composition of the CEI, desorption electrospray ionization mass spectrometry (DESI-MS) is applied to study common lithium ion battery cathodes. We observe CEI formation on the LiMn2O4 cathode material after cycling between 3.5 and 4.5 V vs Li/Li(+) in electrolyte solution containing 1 M LiPF6 or LiClO4 in 1:1 (v/v) ethylene carbonate (EC) and dimethyl carbonate (DMC). Intact poly(ethylene glycol) dimethyl ether is identified as the electrolyte degradation product on the cathode surface by the high mass-resolution Orbitrap mass spectrometer. When EC is paired with ethyl methyl carbonate (EMC), poly(ethylene glycol) dimethyl ether, poly(ethylene glycol) ethyl methyl ether, and poly(ethylene glycol) are found on the surface simultaneously. The presence of ethoxy and methoxy end groups indicates both methoxide and ethoxide are produced and involved in the process of oligomerization. Au surfaces cycled under different electrochemical windows as model systems for Li-ion battery anodes are also examined. Interestingly, the identical oligomeric species to those found in the CEI are found on Au surfaces after running five cycles between 2.0 and 0.1 V vs Li/Li(+) in half-cells. These results show that DESI-MS provides intact molecular information on battery electrodes, enabling deeper understanding of the SEI or CEI composition.

  8. Software tools of the Computis European project to process mass spectrometry images.

    PubMed

    Robbe, Marie-France; Both, Jean-Pierre; Prideaux, Brendan; Klinkert, Ivo; Picaud, Vincent; Schramm, Thorsten; Hester, Atfons; Guevara, Victor; Stoeckli, Markus; Roempp, Andreas; Heeren, Ron M A; Spengler, Bernhard; Gala, Olivier; Haan, Serge

    2014-01-01

    Among the needs usually expressed by teams using mass spectrometry imaging, one that often arises is that for user-friendly software able to manage huge data volumes quickly and to provide efficient assistance for the interpretation of data. To answer this need, the Computis European project developed several complementary software tools to process mass spectrometry imaging data. Data Cube Explorer provides a simple spatial and spectral exploration for matrix-assisted laser desorption/ionisation-time of flight (MALDI-ToF) and time of flight-secondary-ion mass spectrometry (ToF-SIMS) data. SpectViewer offers visualisation functions, assistance to the interpretation of data, classification functionalities, peak list extraction to interrogate biological database and image overlay, and it can process data issued from MALDI-ToF, ToF-SIMS and desorption electrospray ionisation (DESI) equipment. EasyReg2D is able to register two images, in American Standard Code for Information Interchange (ASCII) format, issued from different technologies. The collaboration between the teams was hampered by the multiplicity of equipment and data formats, so the project also developed a common data format (imzML) to facilitate the exchange of experimental data and their interpretation by the different software tools. The BioMap platform for visualisation and exploration of MALDI-ToF and DESI images was adapted to parse imzML files, enabling its access to all project partners and, more globally, to a larger community of users. Considering the huge advantages brought by the imzML standard format, a specific editor (vBrowser) for imzML files and converters from proprietary formats to imzML were developed to enable the use of the imzML format by a broad scientific community. This initiative paves the way toward the development of a large panel of software tools able to process mass spectrometry imaging datasets in the future.

  9. Online Investigation of Aqueous-Phase Electrochemical Reactions by Desorption Electrospray Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Lu, Mei; Liu, Yong; Helmy, Roy; Martin, Gary E.; Dewald, Howard D.; Chen, Hao

    2015-08-01

    Electrochemistry (EC) combined with mass spectrometry (MS) is a powerful tool for elucidation of electrochemical reaction mechanisms. However, direct online analysis of electrochemical reaction in aqueous phase was rarely explored. This paper presents the online investigation of several electrochemical reactions with biological relevance in the aqueous phase, such as nitrosothiol reduction, carbohydrate oxidation, and carbamazepine oxidation using desorption electrospray ionization mass spectrometry (DESI-MS). It was found that electroreduction of nitrosothiols [e.g., nitrosylated insulin B (13-23)] leads to free thiols by loss of NO, as confirmed by online MS analysis for the first time. The characteristic mass shift of 29 Da and the reduced intensity provide a quick way to identify nitrosylated species. Equally importantly, upon collision-induced dissociation (CID), the reduced peptide ion produces more fragment ions than its nitrosylated precursor ion (presumably the backbone fragmentation cannot compete with the facile NO loss for the precursor ion), thus facilitating peptide sequencing. In the case of saccharide oxidation, it was found that glucose undergoes electro-oxidation to produce gluconic acid at alkaline pH, but not at neutral and acidic pHs. Such a pH-dependent electrochemical behavior was also observed for disaccharides such as maltose and cellobiose. Upon electrochemical oxidation, carbamazepine was found to undergo ring contraction and amide bond cleavage, which parallels the oxidative metabolism observed for this drug in leucocytes. The mechanistic information of these redox reactions revealed by EC/DESI-MS would be of value in nitroso-proteome research and carbohydrate/drug metabolic studies.

  10. Combining Two-Dimensional Diffusion-Ordered Nuclear Magnetic Resonance Spectroscopy, Imaging Desorption Electrospray Ionization Mass Spectrometry, and Direct Analysis in Real-Time Mass Spectrometry for the Integral Investigation of Counterfeit Pharmaceuticals

    PubMed Central

    Nyadong, Leonard; Harris, Glenn A.; Balayssac, Stéphane; Galhena, Asiri S.; Malet-Martino, Myriam; Martino, Robert; Parry, R. Mitchell; Wang, May Dongmei; Fernández, Facundo M.; Gilard, Véronique

    2016-01-01

    During the past decade, there has been a marked increase in the number of reported cases involving counterfeit medicines in developing and developed countries. Particularly, artesunate-based antimalarial drugs have been targeted, because of their high demand and cost. Counterfeit antimalarials can cause death and can contribute to the growing problem of drug resistance, particularly in southeast Asia. In this study, the complementarity of two-dimensional diffusion-ordered 1H nuclear magnetic resonance spectroscopy (2D DOSY 1H NMR) with direct analysis in real-time mass spectrometry (DART MS) and desorption electrospray ionization mass spectrometry (DESI MS) was assessed for pharmaceutical forensic purposes. Fourteen different artesunate tablets, representative of what can be purchased from informal sources in southeast Asia, were investigated with these techniques. The expected active pharmaceutical ingredient was detected in only five formulations via both nuclear magnetic resonance (NMR) and mass spectrometry (MS) methods. Common organic excipients such as sucrose, lactose, stearate, dextrin, and starch were also detected. The graphical representation of DOSY 1H NMR results proved very useful for establishing similarities among groups of samples, enabling counterfeit drug “chemotyping”. In addition to bulk- and surface-average analyses, spatially resolved information on the surface composition of counterfeit and genuine antimalarial formulations was obtained using DESI MS that was performed in the imaging mode, which enabled one to visualize the homogeneity of both genuine and counterfeit drug samples. Overall, this study suggests that 2D DOSY 1H NMR, combined with ambient MS, comprises a powerful suite of instrumental analysis methodologies for the integral characterization of counterfeit antimalarials. PMID:19453162

  11. 3D-printed polylactic acid supports for enhanced ionization efficiency in desorption electrospray mass spectrometry analysis of liquid and gel samples.

    PubMed

    Elviri, Lisa; Foresti, Ruben; Bianchera, Annalisa; Silvestri, Marco; Bettini, Ruggero

    2016-08-01

    The potential of 3D printing technology was here exploited to prepare tailored polylactic acid (PLA) supports for desorption electrospray ionization (DESI) experiments. PLA rough solid supports presenting wells of different shape (i.e. cylindrical, cubic and hemispherical cavities) were designed to accommodate samples of different physical state. The potentials of such supports in terms of sample loading capacity, sensitivity, signal stability were tested by analysing a peptide (i.e. insulin) and an aminoglycoside antibiotic (i.e. gentamicin sulphate) from solution and a chitosan-based gel. The results obtained were compared with those obtained by using a traditional polytetrafluoroethylene (PTFE) support and discussed. By using PLA support on the flat side, signal intensity improved almost twice with respect to PTFE support, whereas with spherical wells a five times improved signal sensitivity and good stability (RSD<6%) were obtained for the analysis of two model molecules. Limits of detection were in the 3-10nM range and linearity was demonstrated for both analytes in the 0.05-0.5μM range for semi-quantitative or quantitative purposes. The use of a well and the set-up of optimal source parameters allowed the analysis of samples in a gel state with good precision (RSD<10%) and accuracy (86±6-102±9%), otherwise difficult to analyse on a flat smooth surface. These findings are of great interest and stimulus to exploit the advantages of 3D printing technology for the development of devices for a DESI source, presenting different shapes or configuration as a function of the sample types.

  12. Inverse bremsstrahlung cross section estimated within evolving plasmas using effective ion potentials

    NASA Astrophysics Data System (ADS)

    Wang, F.; Weckert, E.; Ziaja, B.

    2009-06-01

    We estimate the total cross sections for field-stimulated photoemissions and photoabsorptions by quasi-free electrons within a non-equilibrium plasma evolving from the strong coupling to the weak coupling regime. Such a transition may occur within laser-created plasmas, when the initially created plasma is cold but the heating of the plasma by the laser field is efficient. In particular, such a transition may occur within plasmas created by intense vacuum ultraviolet (VUV) radiation from a free-electron laser (FEL) as indicated by the results of the first experiments performed by Wabnitz at the FLASH facility at DESY. In order to estimate the inverse bremsstrahlung cross sections, we use point-like and effective atomic potentials. For ions modelled as point-like charges, the total cross sections are strongly affected by the changing plasma environment. The maximal change of the cross sections may be of the order of 75 at the change of the plasma parameters: inverse Debye length, κ, in the range κ = 0 - 3 Å-1 and the electron density, ρe, in the range ρe = 0.01 - 1 Å-3. These ranges correspond to the physical conditions within the plasmas created during the first cluster experiments performed at the FLASH facility at DESY. In contrast, for the effective atomic potentials the total cross sections for photoemission and photoabsorption change only by a factor of seven at most in the same plasma parameter range. Our results show that the inverse bremsstrahlung cross section estimated with the effective atomic potentials is not affected much by the plasma environment. This observation validates the estimations of the enhanced heating effect obtained by Walters, Santra and Greene. This is important as this effect may be responsible for the high-energy absorption within clusters irradiated with VUV radiation.

  13. Differential effects of antidepressants on glucocorticoid receptors in human primary blood cells and human monocytic U-937 cells.

    PubMed

    Heiske, Andreas; Jesberg, Jutta; Krieg, Jürgen-Christian; Vedder, Helmut

    2003-04-01

    A number of data support the assumption that antidepressants (ADs) normalize the altered function of the hypothalamic-pituitary-adrenocortical (HPA) system involved in the pathophysiology of depressive disorder via direct effects on glucocorticoid receptors (GRs). In the present study, we examined the tricyclic ADs desipramine (DESI) and imipramine (IMI), the noradrenaline reuptake inhibitor maprotiline (MAPRO), and the noradrenergic and specific serotonergic AD (NaSSA) mirtazapine (MIR) for their effects on GR expression in primary human leukocytes and in monocytic U-937 cells. Semiquantitative RT-PCR indicated that the ADs exert differential effects on GR-mRNA levels in both primary human leukocytes and U-937 cells: whereas MAPRO and IMI did not induce pronounced changes in GR-mRNA levels, DESI and MIR significantly decreased the amounts of GR-mRNA in both cell systems. Further characterization of the effects of MIR revealed a time dependency of the regulation with an initial increase of GR-mRNA levels above control levels after 2.5 h of treatment and a decrease after 4, 24, and 48 h of incubation. A dose-response analysis demonstrated maximal effects of MIR at a concentration of 10(-7) M. Immunohistochemical studies showed that MIR increased the GR protein levels in a time-dependent manner and that this upregulation appeared earlier by additional treatment with dexamethasone (DEX). A translocation of the GR protein from the cytoplasm to the nucleus was induced between 24 and 48 h of treatment with MIR and MIR/DEX, respectively. Taken together, our data further support the assumption that ADs influence the neuroendocrine and immune system via effects on cellular GRs. PMID:12655328

  14. Differential Lipid Profiles of Normal Human Brain Matter and Gliomas by Positive and Negative Mode Desorption Electrospray Ionization – Mass Spectrometry Imaging

    PubMed Central

    Pirro, Valentina; Hattab, Eyas M.; Cohen-Gadol, Aaron A.; Cooks, R. Graham

    2016-01-01

    Desorption electrospray ionization—mass spectrometry (DESI-MS) imaging was used to analyze unmodified human brain tissue sections from 39 subjects sequentially in the positive and negative ionization modes. Acquisition of both MS polarities allowed more complete analysis of the human brain tumor lipidome as some phospholipids ionize preferentially in the positive and others in the negative ion mode. Normal brain parenchyma, comprised of grey matter and white matter, was differentiated from glioma using positive and negative ion mode DESI-MS lipid profiles with the aid of principal component analysis along with linear discriminant analysis. Principal component–linear discriminant analyses of the positive mode lipid profiles was able to distinguish grey matter, white matter, and glioma with an average sensitivity of 93.2% and specificity of 96.6%, while the negative mode lipid profiles had an average sensitivity of 94.1% and specificity of 97.4%. The positive and negative mode lipid profiles provided complementary information. Principal component–linear discriminant analysis of the combined positive and negative mode lipid profiles, via data fusion, resulted in approximately the same average sensitivity (94.7%) and specificity (97.6%) of the positive and negative modes when used individually. However, they complemented each other by improving the sensitivity and specificity of all classes (grey matter, white matter, and glioma) beyond 90% when used in combination. Further principal component analysis using the fused data resulted in the subgrouping of glioma into two groups associated with grey and white matter, respectively, a separation not apparent in the principal component analysis scores plots of the separate positive and negative mode data. The interrelationship of tumor cell percentage and the lipid profiles is discussed, and how such a measure could be used to measure residual tumor at surgical margins. PMID:27658243

  15. Pseudomonas putida attunes morphophysiological, biochemical and molecular responses in Cicer arietinum L. during drought stress and recovery.

    PubMed

    Tiwari, Shalini; Lata, Charu; Chauhan, Puneet Singh; Nautiyal, Chandra Shekhar

    2016-02-01

    Drought is one of the most important abiotic stresses that adversely affect plant growth and yield potential. However, some drought resistant rhizosphere competent bacteria are known to improve plant health and promote growth during abiotic stresses. Present study showed the role of Pseudomonas putida MTCC5279 (RA) in ameliorating drought stress on cv. BG-362 (desi) and cv. BG-1003 (kabuli) chickpea cultivars under in vitro and green house conditions. Polyethylene glycol-induced drought stress severely affected seed germination in both cultivars which was considerably improved on RA-inoculation. Drought stress significantly affected various growth parameters, water status, membrane integrity, osmolyte accumulation, ROS scavenging ability and stress-responsive gene expressions, which were positively modulated upon application of RA in both chickpea cultivars. Quantitative real-time (qRT)-PCR analysis showed differential expression of genes involved in transcription activation (DREB1A and NAC1), stress response (LEA and DHN), ROS scavenging (CAT, APX, GST), ethylene biosynthesis (ACO and ACS), salicylic acid (PR1) and jasmonate (MYC2) signalling in both chickpea cultivars exposed to drought stress and recovery in the presence or absence of RA. The observations imply that RA confers drought tolerance in chickpea by altering various physical, physiological and biochemical parameters, as well as by modulating differential expression of at least 11 stress-responsive genes. To the best of our knowledge, this is the first report on detailed analysis of plant growth promotion and stress alleviation in one month old desi and kabuli chickpea subjected to drought stress for 0, 1, 3 and 7 days and recovery in the presence of a PGPR. PMID:26744996

  16. Online Investigation of Aqueous-Phase Electrochemical Reactions by Desorption Electrospray Ionization Mass Spectrometry.

    PubMed

    Lu, Mei; Liu, Yong; Helmy, Roy; Martin, Gary E; Dewald, Howard D; Chen, Hao

    2015-10-01

    Electrochemistry (EC) combined with mass spectrometry (MS) is a powerful tool for elucidation of electrochemical reaction mechanisms. However, direct online analysis of electrochemical reaction in aqueous phase was rarely explored. This paper presents the online investigation of several electrochemical reactions with biological relevance in the aqueous phase, such as nitrosothiol reduction, carbohydrate oxidation, and carbamazepine oxidation using desorption electrospray ionization mass spectrometry (DESI-MS). It was found that electroreduction of nitrosothiols [e.g., nitrosylated insulin B (13-23)] leads to free thiols by loss of NO, as confirmed by online MS analysis for the first time. The characteristic mass shift of 29 Da and the reduced intensity provide a quick way to identify nitrosylated species. Equally importantly, upon collision-induced dissociation (CID), the reduced peptide ion produces more fragment ions than its nitrosylated precursor ion (presumably the backbone fragmentation cannot compete with the facile NO loss for the precursor ion), thus facilitating peptide sequencing. In the case of saccharide oxidation, it was found that glucose undergoes electro-oxidation to produce gluconic acid at alkaline pH, but not at neutral and acidic pHs. Such a pH-dependent electrochemical behavior was also observed for disaccharides such as maltose and cellobiose. Upon electrochemical oxidation, carbamazepine was found to undergo ring contraction and amide bond cleavage, which parallels the oxidative metabolism observed for this drug in leucocytes. The mechanistic information of these redox reactions revealed by EC/DESI-MS would be of value in nitroso-proteome research and carbohydrate/drug metabolic studies.

  17. Characterization of amorphous carbon films as total-reflection mirrors for XUV free-electron lasers

    NASA Astrophysics Data System (ADS)

    Jacobi, Sandra; Steeg, Barbara; Wiesmann, Jorg; Stormer, Michael; Feldhaus, Josef; Bormann, R.'diger; Michaelsen, Carsten

    2002-12-01

    As part of the TESLA (TeV-Energy Superconducting Linear Accelerator) project a free electron laser (FEL) in the XUV (Extreme Ultra-Violet, (6-200 eV)) and X-ray (0.5-15 keV) range is being developed at DESY (Deutsches Elektronen Synchrotron, Hamburg). At the TESLA Test Facility (TTF) a prototype FEL has recently demonstrated maximum light amplification in the range of 80 nm to 120 nm. It is expected that the FEL will provide intense, sub-picosecond radiation pulses with photon energies up to 200 eV in the next development stage. In a joint project between DESY and GKSS, thin film optical elements with very high radiation stability, as required for FEL applications, are currently being developed. Sputter-deposited amorphous carbon coatings have been prepared for use as total reflection X-ray mirrors. The optical characterization of the mirrors has been carried out using the soft X-ray reflectometer at HASYLAB (Hamburger Synchrotronstrahlungslabor) beamline G1. The reflectivity of the carbon films at 2 deg incidence angle is close to the theoretical reflectivity of 95.6 %, demonstrating the high quality of the coatings. For comparison, layers produced by different methods (e.g. Chemical vapor deposition, Pulsed laser deposition) have been characterized as well. Annealing experiments have been performed to evaluate the thermal stability of the amorphous carbon films. Further investigations concerning the radiation stability of the X-ray mirrors have also been conducted. The mirrors were irradiated in the FELIS (Free Electron Laser-Interaction with Solids) experiment at the TTF-FEL. Microscopic investigations demonstrate that the carbon mirrors are fairly stable.

  18. Reactions of Microsolvated Organic Compounds at Ambient Surfaces: Droplet Velocity, Charge State, and Solvent Effects

    NASA Astrophysics Data System (ADS)

    Badu-Tawiah, Abraham K.; Campbell, Dahlia I.; Cooks, R. Graham

    2012-06-01

    The exposure of charged microdroplets containing organic ions to solid-phase reagents at ambient surfaces results in heterogeneous ion/surface reactions. The electrosprayed droplets were driven pneumatically in ambient air and then electrically directed onto a surface coated with reagent. Using this reactive soft landing approach, acid-catalyzed Girard condensation was achieved at an ambient surface by directing droplets containing Girard T ions onto a dry keto-steroid. The charged droplet/surface reaction was much more efficient than the corresponding bulk solution-phase reaction performed on the same scale. The increase in product yield is ascribed to solvent evaporation, which causes moderate pH values in the starting droplet to reach extreme values and increases reagent concentrations. Comparisons are made with an experiment in which the droplets were pneumatically accelerated onto the ambient surface (reactive desorption electrospray ionization, DESI). The same reaction products were observed but differences in spatial distribution were seen associated with the "splash" of the high velocity DESI droplets. In a third type of experiment, the reactions of charged droplets with vapor phase reagents were examined by allowing electrosprayed droplets containing a reagent to intercept the headspace vapor of an analyte. Deposition onto a collector surface and mass analysis showed that samples in the vapor phase were captured by the electrospray droplets, and that instantaneous derivatization of the captured sample is possible in the open air. The systems examined under this condition included the derivatization of cortisone vapor with Girard T and that of 4-phenylpyridine N-oxide and 2-phenylacetophenone vapors with ethanolamine.

  19. COMPLETION OF SUPERCONDUCTING MAGNET PRODUCTION AT BNL FOR THE HERA LUMINOSITY UPGRADE

    SciTech Connect

    WANDERER,P.ANERELLA,M.ESCALLIER,J.GHOSH,A.JAIN,A.MARONE,A.MURATORE,J.PARKER,A.PRODELL,A.THOMPSON,P.WU,K.C.

    2001-09-24

    Brookhaven National Laboratory (BNL) has completed production of the superconducting multi-function magnets that are now installed as part of the HERA luminosity upgrade at DESY. The magnets, cryostats, and lead assemblies were designed and built at BNL. To fit inside the existing detectors, the coils plus cryostat structure had to meet a challenging radial budget (e.g., 39 mm horizontally). Two types of magnets were needed and three of each type were built. Each magnet contained normal and skew quadrupole, normal and skew dipole, and sextupole coils. The magnets operate in the {approx}1.5 T solenoid field of a detector. The quadrupole coils produce gradients up to 13 T/m. The dipole coils generate fields up to 0.3 T. Coils were wound under computer control using either seven-strand round cable or a single strand. To simultaneously avoid excessive synchrotron radiation background scattered from the beam pipe and yet have a small cryostat, one type of magnet used a tapered coil structure. The cryogenic system incorporates cooling with both 40 K helium and supercritical helium. All of the coils were tested in liquid helium in a vertical dewar. Quench test results have been excellent. The field quality of the magnets has met the stringent requirements imposed on interaction region magnets. One magnet of each type was tested at BNL as a completed assembly to verify the performance of the leads and cryostats. Two of each type were tested at DESY and then installed in the Zeus and H1 experiments. The remaining magnets are spares. Final results of quench testing, field quality measurements and cryogenic performance are reported.

  20. Mass Spectrometry Imaging under Ambient Conditions

    PubMed Central

    Wu, Chunping; Dill, Allison L.; Eberlin, Livia S.; Cooks, R. Graham; Ifa, Demian R.

    2012-01-01

    Mass spectrometry imaging (MSI) has emerged as an important tool in the last decade and it is beginning to show potential to provide new information in many fields owing to its unique ability to acquire molecularly specific images and to provide multiplexed information, without the need for labeling or staining. In MSI, the chemical identity of molecules present on a surface is investigated as a function of spatial distribution. In addition to now standard methods involving MSI in vacuum, recently developed ambient ionization techniques allow MSI to be performed under atmospheric pressure on untreated samples outside the mass spectrometer. Here we review recent developments and applications of MSI emphasizing the ambient ionization techniques of desorption electrospray ionization (DESI), laser ablation electrospray ionization (LAESI), probe electrospray ionization (PESI), desorption atmospheric pressure photoionization (DAPPI), femtosecond laser desorption ionization (fs-LDI), laser electrospray mass spectrometry (LEMS), infrared laser ablation metastable-induced chemical ionization (IR-LAMICI), liquid microjunction surface sampling probe mass spectrometry (LMJ-SSP MS), nanospray desorption electrospray ionization (nano-DESI), and plasma sources such as the low temperature plasma (LTP) probe and laser ablation coupled to flowing atmospheric-pressure afterglow (LA-FAPA). Included are discussions of some of the features of ambient MSI including the ability to implement chemical reactions with the goal of providing high abundance ions characteristic of specific compounds of interest and the use of tandem mass spectrometry to either map the distribution of targeted molecules with high specificity or to provide additional MS information in the structural identification of compounds. We also describe the role of bioinformatics in acquiring and interpreting the chemical and spatial information obtained through MSI, especially in biological applications for tissue

  1. The DECam Legacy Survey

    NASA Astrophysics Data System (ADS)

    Blum, Robert D.; Burleigh, Kaylan; Dey, Arjun; Schlegel, David J.; Meisner, Aaron M.; Levi, Michael; Myers, Adam D.; Lang, Dustin; Moustakas, John; Patej, Anna; Valdes, Francisco; Kneib, Jean-Paul; Huanyuan, Shan; Nord, Brian; Olsen, Knut A.; Delubac, Timothée; Saha, Abi; James, David; Walker, Alistair R.; DECaLS Team

    2016-06-01

    The DECam Legacy Survey (DECaLS) is conducting a 3-band imaging survey of the Sloan Digital Sky Survey (SDSS) extragalactic footprint as part of the Legacy Survey, which is associated with the Dark Energy Spectroscopic Instrument (DESI) redshift survey. The Legacy Survey covers 14000 square degrees in the g, r, and z bands and is being executed on the Blanco 4-m, Mayall 4-m, and Bok 2.3-m telescopes. For DECaLS, the Dark Energy Camera (DECam) will image the footprint overlapping SDSS in the region -20 < Dec < +30 deg, to depths of g=24.7, r=23.9, z=23.0 and will eventually cover a total of 7500 square degrees. The survey began in 2014 and will run through Spring 2017. Images and catalogs were introduced in Public Data Release 2 (DR2), which occurred in January 2016. The algorithm "Tractor" applies multi-wavelength forced photometry to DECam and WISE data to produce galaxy (and star) magnitudes (as well as shape and other information) for the catalogs. In total, the optical data in DR2 cover a disjoint footprint in 2078, 2141 and 5322 square degrees in g, r, and z bands, respectively; 1807 square degrees has been observed in all three optical filters. There are approximately 260 million unique sources in DR2 spread over 97,554 0.25 x 0.25 square degree bricks.The Dark Energy Spectroscopic Instrument (DESI) will observe 30+ million galaxies and quasars in a 14,000 square degree extragalactic footprint. The targeting in that footprint will be provided by a combination of these DECam data, the MOSAIC camera on the Mayall 4-meter, and the 90Prime camera on the Bok telescope.

  2. Pseudomonas putida attunes morphophysiological, biochemical and molecular responses in Cicer arietinum L. during drought stress and recovery.

    PubMed

    Tiwari, Shalini; Lata, Charu; Chauhan, Puneet Singh; Nautiyal, Chandra Shekhar

    2016-02-01

    Drought is one of the most important abiotic stresses that adversely affect plant growth and yield potential. However, some drought resistant rhizosphere competent bacteria are known to improve plant health and promote growth during abiotic stresses. Present study showed the role of Pseudomonas putida MTCC5279 (RA) in ameliorating drought stress on cv. BG-362 (desi) and cv. BG-1003 (kabuli) chickpea cultivars under in vitro and green house conditions. Polyethylene glycol-induced drought stress severely affected seed germination in both cultivars which was considerably improved on RA-inoculation. Drought stress significantly affected various growth parameters, water status, membrane integrity, osmolyte accumulation, ROS scavenging ability and stress-responsive gene expressions, which were positively modulated upon application of RA in both chickpea cultivars. Quantitative real-time (qRT)-PCR analysis showed differential expression of genes involved in transcription activation (DREB1A and NAC1), stress response (LEA and DHN), ROS scavenging (CAT, APX, GST), ethylene biosynthesis (ACO and ACS), salicylic acid (PR1) and jasmonate (MYC2) signalling in both chickpea cultivars exposed to drought stress and recovery in the presence or absence of RA. The observations imply that RA confers drought tolerance in chickpea by altering various physical, physiological and biochemical parameters, as well as by modulating differential expression of at least 11 stress-responsive genes. To the best of our knowledge, this is the first report on detailed analysis of plant growth promotion and stress alleviation in one month old desi and kabuli chickpea subjected to drought stress for 0, 1, 3 and 7 days and recovery in the presence of a PGPR.

  3. Characterization of the Cathode Electrolyte Interface in Lithium Ion Batteries by Desorption Electrospray Ionization Mass Spectrometry.

    PubMed

    Liu, Yao-Min; G Nicolau, Bruno; Esbenshade, Jennifer L; Gewirth, Andrew A

    2016-07-19

    The solid electrolyte interface (SEI) formed via electrolyte decomposition on the anode of lithium ion batteries is largely responsible for the stable cycling of conventional lithium ion batteries. Similarly, there is a lesser-known analogous layer on the cathode side of a lithium ion battery, termed the cathode electrolyte interface (CEI), whose composition and role are debated. To confirm the existence and composition of the CEI, desorption electrospray ionization mass spectrometry (DESI-MS) is applied to study common lithium ion battery cathodes. We observe CEI formation on the LiMn2O4 cathode material after cycling between 3.5 and 4.5 V vs Li/Li(+) in electrolyte solution containing 1 M LiPF6 or LiClO4 in 1:1 (v/v) ethylene carbonate (EC) and dimethyl carbonate (DMC). Intact poly(ethylene glycol) dimethyl ether is identified as the electrolyte degradation product on the cathode surface by the high mass-resolution Orbitrap mass spectrometer. When EC is paired with ethyl methyl carbonate (EMC), poly(ethylene glycol) dimethyl ether, poly(ethylene glycol) ethyl methyl ether, and poly(ethylene glycol) are found on the surface simultaneously. The presence of ethoxy and methoxy end groups indicates both methoxide and ethoxide are produced and involved in the process of oligomerization. Au surfaces cycled under different electrochemical windows as model systems for Li-ion battery anodes are also examined. Interestingly, the identical oligomeric species to those found in the CEI are found on Au surfaces after running five cycles between 2.0 and 0.1 V vs Li/Li(+) in half-cells. These results show that DESI-MS provides intact molecular information on battery electrodes, enabling deeper understanding of the SEI or CEI composition. PMID:27346184

  4. The scholar role in the National Competence Based Catalogues of Learning Objectives for Undergraduate Medical Education (NKLM) compared to other international frameworks.

    PubMed

    Hautz, Stefanie C; Hautz, Wolf E; Keller, Niklas; Feufel, Markus A; Spies, Claudia

    2015-01-01

    Hintergrund: In Deutschland haben die Gesellschaft für Medizinische Ausbildung (GMA) und der Medizinische Fakultätentag (MFT) den Nationalen Kompetenzbasierten Lernzielkatalog Medizin (NKLM) federführend entwickelt. Dieser beschreibt, wie viele internationale Pendants, detailliert Qualifikationen für Absolventen des Medizinstudiums. Die Definition derartiger Rahmenwerke folgt der Bestrebung, Ausbildungsinhalte den Lehrenden und Lernenden sowie der Gesellschaft transparent darzustellen. Der NKLM ergänzt die Listen von Themen aus Gegenstandskatalogen durch eine Sammlung erlernbarer Kompetenzen. Alle Rahmenwerke sind dabei entweder in Kapitel oder Domänen oder nach ärztlichen Rollen gegliedert. Dabei wirft die Definition der Gelehrten-Rolle zahlreiche Fragen auf, wie Studien gezeigt haben: Welcher Unterschied besteht zwischen den notwendigen Qualifikationen als wissenschaftlich qualifizierter Arzt und denen als ärztlicher Wissenschaftler? Wie werden die Schwerpunkte gesetzt und wie unterscheiden sie sich im internationalen Vergleich?Methode: In einer systematischen, dreistufigen Recherche wurden 13 internationale Rahmenwerke identifiziert und deren Inhalte durch eine qualitative Textanalyse mit den Inhalten der Gelehrten-Rolle des NKLM verglichen. Die drei Stufen umfassen (1) die systematische Suche, (2) die transparente Auswahl publizierter Rahmenwerke (in- und exclusion) und (3) die Datenextraktion, Kategorisierung und Validierung. Die Ergebnisse daraus wurden mit der Gelehrten-Rolle des NKLM verglichen.Ergebnisse: Die extrahierten Inhalte aller Rahmenwerke lassen sich in die Komponenten Gemeinsame Grundlagen, Klinische Anwendung, Forschung, Lehren und Bilden, sowie Lebenslanges Lernen gliedern. Im Unterschied zu den verglichenen Rahmenwerken betont der NKLM die zum Forschen und Lehren notwendigen Kompetenzen, während die klinische Anwendung eine vergleichsweise untergeordnete Rolle spielt. Schlussfolgerung: Die Inhalte der Gelehrtenrolle des NKLM

  5. The Nachlass (estate) of Heinrich von Eggeling (1869-1954), long-time secretary of the Anatomische Gesellschaft.

    PubMed

    Winkelmann, Andreas

    2015-09-01

    Heinrich von Eggeling (1869-1954), professor of anatomy in Breslau from 1922, was secretary of the Anatomische Gesellschaft (AG) from 1919 until 1949 and also editor of the Anatomischer Anzeiger, today's Annals of Anatomy. His "Wissenschaftlicher Nachlass [scientific estate]" could recently be located in private hands and has now been made available at the archive of the AG held by the current secretary. It consists of 45 folders, mainly containing von Eggeling's national and international correspondence from 1919 to 1953. It thus covers the times of the Weimar republic and of the "Third Reich" as well as the post-war period, when the AG had been officially closed down by the Allied Control Council and was eventually re-founded in 1949. Von Eggeling preserved this material despite war destruction of his Berlin home, where he lived after his retirement in 1935, and his cramped post-war confines in a small town near Hannover. The estate also includes autobiographical manuscripts of von Eggeling and some material from his predecessor, the first secretary of the AG since 1886, Karl von Bardeleben (1849-1918). There is evidence that the correspondence is not complete, even if there are no significant time gaps. The contents suggest that letters deemed insignificant, like fee reminders or editorial decisions, were discarded at some point, but it remains unclear by whom. This estate fills a significant gap in the historical material related to the AG and will be an important source for any future historical investigation regarding the society. PMID:26143371

  6. German contributions to the CMS computing infrastructure

    NASA Astrophysics Data System (ADS)

    Scheurer, A.; German CMS Community

    2010-04-01

    The CMS computing model anticipates various hierarchically linked tier centres to counter the challenges provided by the enormous amounts of data which will be collected by the CMS detector at the Large Hadron Collider, LHC, at CERN. During the past years, various computing exercises were performed to test the readiness of the computing infrastructure, the Grid middleware and the experiment's software for the startup of the LHC which took place in September 2008. In Germany, several tier sites are set up to allow for an efficient and reliable way to simulate possible physics processes as well as to reprocess, analyse and interpret the numerous stored collision events of the experiment. It will be shown that the German computing sites played an important role during the experiment's preparation phase and during data-taking of CMS and, therefore, scientific groups in Germany will be ready to compete for discoveries in this new era of particle physics. This presentation focuses on the German Tier-1 centre GridKa, located at Forschungszentrum Karlsruhe, the German CMS Tier-2 federation DESY/RWTH with installations at the University of Aachen and the research centre DESY. In addition, various local computing resources in Aachen, Hamburg and Karlsruhe are briefly introduced as well. It will be shown that an excellent cooperation between the different German institutions and physicists led to well established computing sites which cover all parts of the CMS computing model. Therefore, the following topics are discussed and the achieved goals and the gained knowledge are depicted: data management and distribution among the different tier sites, Grid-based Monte Carlo production at the Tier-2 as well as Grid-based and locally submitted inhomogeneous user analyses at the Tier-3s. Another important task is to ensure a proper and reliable operation 24 hours a day, especially during the time of data-taking. For this purpose, the meta-monitoring tool "HappyFace", which was

  7. Ethanol extracts of chickpeas alter the total lipid content and expression levels of genes related to fatty acid metabolism in mouse 3T3-L1 adipocytes.

    PubMed

    Shinohara, Shigeo; Gu, Yuanjun; Yang, Ying; Furuta, Yasuo; Tanaka, Masahiko; Yue, Xiaohua; Wang, Weiqing; Kitano, Masaru; Kimura, Hiroshi

    2016-08-01

    Desi-type chickpeas, which have long been used as a natural treatment for diabetes, have been reported to lower visceral adiposity, dyslipidemia and insulin resistance induced by a chronic high-fat diet in rats. In this study, in order to examine the effects of chickpeas of this type in an in vitro system, we used the 3T3-L1 mouse cell line, a subclone of Swiss 3T3 cells, which can differentiate into cells with an adipocyte-like phenotype, and we used ethanol extracts of chickpeas (ECP) instead of chickpeas. Treatment of the 3T3-L1 cells with ECP led to a decrease in the lipid content in the cells. The desaturation index, defined as monounsaturated fatty acids (MUFAs)/saturated fatty acids (SFAs), was also decreased by ECP due to an increase in the cellular content of SFAs and a decrease in the content of MUFAs. The decrease in this index may reflect a decreased reaction from SFA to MUFA, which is essential for fat storage. To confirm this hypothesis, we conducted a western blot analysis, which revealed a reduction in the amount of stearoyl-CoA desaturase 1 (SCD1), a key enzyme catalyzing the reaction from SFA to MUFA. We observed simultaneous inactivations of enzymes participating in lipogenesis, i.e., liver kinase B1 (LKB1), acetyl-CoA carboxylase (ACC) and AMPK, by phosphorylation, which may lead to the suppression of reactions from acetyl-CoA to SFA via malonyl-CoA in lipogenesis. We also investigated whether lipolysis is affected by ECP. The amount of carnitine palmitoyltransferase 1 (CPT1), an enzyme important for the oxidation of fatty acids, was increased by ECP treatment. ECP also led to an increase in uncoupling protein 2 (UCP2), reported as a key protein for the oxidation of fatty acids. All of these results obtained regarding lipogenesis and fatty acid metabolism in our in vitro system are consistent with the results previously shown in rats. We also examined the effects on SCD1 and lipid contents of ethanol extracts of Kabuli

  8. Hydroforming of elliptical cavities

    DOE PAGES

    Singer, W.; Singer, X.; Jelezov, I.; Kneisel, Peter

    2015-02-27

    Activities of the past several years in developing the technique of forming seamless (weldless) cavity cells by hydroforming are summarized. An overview of the technique developed at DESY for the fabrication of single cells and multicells of the TESLA cavity shape is given and the major rf results are presented. The forming is performed by expanding a seamless tube with internal water pressure while simultaneously swaging it axially. Prior to the expansion the tube is necked at the iris area and at the ends. Tube radii and axial displacements are computer controlled during the forming process in accordance with resultsmore » of finite element method simulations for necking and expansion using the experimentally obtained strain-stress relationship of tube material. In cooperation with industry different methods of niobium seamless tube production have been explored. The most appropriate and successful method is a combination of spinning or deep drawing with flow forming. Several single-cell niobium cavities of the 1.3 GHz TESLA shape were produced by hydroforming. They reached accelerating gradients Eacc up to 35 MV/m after buffered chemical polishing (BCP) and up to 42 MV/m after electropolishing (EP). More recent work concentrated on fabrication and testing of multicell and nine-cell cavities. Several seamless two- and three-cell units were explored. Accelerating gradients Eacc of 30–35 MV/m were measured after BCP and Eacc up to 40 MV/m were reached after EP. Nine-cell niobium cavities combining three three-cell units were completed at the company E. Zanon. These cavities reached accelerating gradients of Eacc = 30–35 MV/m. One cavity is successfully integrated in an XFEL cryomodule and is used in the operation of the FLASH linear accelerator at DESY. Additionally the fabrication of bimetallic single-cell and multicell NbCu cavities by hydroforming was successfully developed. Several NbCu clad single-cell and double-cell cavities of the TESLA shape have

  9. Bioaugmentation of Mesorhizobium cicer, Pseudomonas spp. and Piriformospora indica for Sustainable Chickpea Production.

    PubMed

    Mansotra, Pallavi; Sharma, Poonam; Sharma, Sunita

    2015-07-01

    Chickpea establishes symbiotic association with Mesorhizobium to fulfill its nitrogen (N) requirement. Integrating chickpea rhizosphere with potential native mesorhizobia and other plant growth promoting microorganisms can contribute multiple benefits to plants. The present investigation was undertaken to study interactions among Piriformospora indica (PI) with potential plant growth promoting rhizobacteria (PGPR) viz. Pseudomonas argentinensis (LPGPR1), Pseudomonas sp. (LPGPR2) along with national check Pseudomons sp. (LK884) and Mesorhizobium cicer (LGR33, MR) to examine the synergistic effect of consortium for improving growth, symbiotic efficiency, nutrient acquisition and yield in two chickpea (Cicer arietinum L.) varieties viz. desi PBG1 and kabuli BG1053. In-vitro, seed germination with consortium MR + PI + LPGPR1 was the best compatible treatment followed by MR + PI + LK884 and MR + PI + LPGPR2. Significant improvement in the growth, symbiotic parameters and grain yield was observed with MR + PI + LPGPR1 and MR + PI + LK884 treatments. Significantly high chlorophyll and leghaemoglobin content was recorded with MR + PI + LPGPR1 (1.57 and 1.64 mg g(-1) fresh weight of leaves and 5.19 and 4.39 mg/g(-1) fresh weight of nodules) in desi PBG1 and kabuli BG1053 chickpea varieties, respectively. At 90 DAS, MR + PI + LPGPR1 treatment significantly improved nodule dry weight (ranged between 84.0 and 141.7 mg plant(-1)) as compared to MR alone treatment (ranged between 62.3 and 123.3 mg plant(-1)). Data revealed significant increase in total nitrogen (N) and phosphorus (P) content of shoot with MR + PI + LPGPR1 by 1.2 and 1.5 fold, respectively over MR alone treatment. On the basis of overall mean, MR + PI + LPGPR1 significantly improved the yield by 8.2 % over Mesorhizobium alone application. It seems from foregoing study that tripartite combination of different micro-organisms can be

  10. Ethanol extracts of chickpeas alter the total lipid content and expression levels of genes related to fatty acid metabolism in mouse 3T3-L1 adipocytes

    PubMed Central

    Shinohara, Shigeo; Gu, Yuanjun; Yang, Ying; Furuta, Yasuo; Tanaka, Masahiko; Yue, Xiaohua; Wang, Weiqing; Kitano, Masaru; Kimura, Hiroshi

    2016-01-01

    Desi-type chickpeas, which have long been used as a natural treatment for diabetes, have been reported to lower visceral adiposity, dyslipidemia and insulin resistance induced by a chronic high-fat diet in rats. In this study, in order to examine the effects of chickpeas of this type in an in vitro system, we used the 3T3-L1 mouse cell line, a subclone of Swiss 3T3 cells, which can differentiate into cells with an adipocyte-like phenotype, and we used ethanol extracts of chickpeas (ECP) instead of chickpeas. Treatment of the 3T3-L1 cells with ECP led to a decrease in the lipid content in the cells. The desaturation index, defined as monounsaturated fatty acids (MUFAs)/saturated fatty acids (SFAs), was also decreased by ECP due to an increase in the cellular content of SFAs and a decrease in the content of MUFAs. The decrease in this index may reflect a decreased reaction from SFA to MUFA, which is essential for fat storage. To confirm this hypothesis, we conducted a western blot analysis, which revealed a reduction in the amount of stearoyl-CoA desaturase 1 (SCD1), a key enzyme catalyzing the reaction from SFA to MUFA. We observed simultaneous inactivations of enzymes participating in lipogenesis, i.e., liver kinase B1 (LKB1), acetyl-CoA carboxylase (ACC) and AMPK, by phosphorylation, which may lead to the suppression of reactions from acetyl-CoA to SFA via malonyl-CoA in lipogenesis. We also investigated whether lipolysis is affected by ECP. The amount of carnitine palmitoyltransferase 1 (CPT1), an enzyme important for the oxidation of fatty acids, was increased by ECP treatment. ECP also led to an increase in uncoupling protein 2 (UCP2), reported as a key protein for the oxidation of fatty acids. All of these results obtained regarding lipogenesis and fatty acid metabolism in our in vitro system are consistent with the results previously shown in rats. We also examined the effects on SCD1 and lipid contents of ethanol extracts of Kabuli-type chickpeas, which are

  11. Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea

    PubMed Central

    Kujur, Alice; Bajaj, Deepak; Upadhyaya, Hari D.; Das, Shouvik; Ranjan, Rajeev; Shree, Tanima; Saxena, Maneesha S.; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C. L. L.; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K.; Parida, Swarup K.

    2015-01-01

    The genome-wide discovery and high-throughput genotyping of SNPs in chickpea natural germplasm lines is indispensable to extrapolate their natural allelic diversity, domestication, and linkage disequilibrium (LD) patterns leading to the genetic enhancement of this vital legume crop. We discovered 44,844 high-quality SNPs by sequencing of 93 diverse cultivated desi, kabuli, and wild chickpea accessions using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays that were physically mapped across eight chromosomes of desi and kabuli. Of these, 22,542 SNPs were structurally annotated in different coding and non-coding sequence components of genes. Genes with 3296 non-synonymous and 269 regulatory SNPs could functionally differentiate accessions based on their contrasting agronomic traits. A high experimental validation success rate (92%) and reproducibility (100%) along with strong sensitivity (93–96%) and specificity (99%) of GBS-based SNPs was observed. This infers the robustness of GBS as a high-throughput assay for rapid large-scale mining and genotyping of genome-wide SNPs in chickpea with sub-optimal use of resources. With 23,798 genome-wide SNPs, a relatively high intra-specific polymorphic potential (49.5%) and broader molecular diversity (13–89%)/functional allelic diversity (18–77%) was apparent among 93 chickpea accessions, suggesting their tremendous applicability in rapid selection of desirable diverse accessions/inter-specific hybrids in chickpea crossbred varietal improvement program. The genome-wide SNPs revealed complex admixed domestication pattern, extensive LD estimates (0.54–0.68) and extended LD decay (400–500 kb) in a structured population inclusive of 93 accessions. These findings reflect the utility of our identified SNPs for subsequent genome-wide association study (GWAS) and selective sweep-based domestication trait dissection analysis to identify potential genomic loci (gene-associated targets) specifically

  12. Three-dimensional imaging of lipids and metabolites in tissues by nanospray desorption electrospray ionization mass spectrometry

    PubMed Central

    Lanekoff, Ingela; Burnum-Johnson, Kristin; Thomas, Mathew; Cha, Jeeyeon; Dey, Sudhansu K.; Yang, Pengxiang; Prieto Conaway, Maria C.

    2016-01-01

    Three-dimensional (3D) imaging of tissue sections is a new frontier in mass spectrometry imaging (MSI). Here, we report on fast 3D imaging of lipids and metabolites associated with mouse uterine decidual cells and embryo at the implantation site on day 6 of pregnancy. 2D imaging of 16–20 serial tissue sections deposited on the same glass slide was performed using nanospray desorption electrospray ionization (nano-DESI)—an ambient ionization technique that enables sensitive localized analysis of analytes on surfaces without special sample pretreatment. In this proof-of-principle study, nano-DESI was coupled to a high-resolution Q-Exactive instrument operated at high repetition rate of >5 Hz with moderate mass resolution of 35,000 (m/Δm at m/z 200), which enabled acquisition of the entire 3D image with a spatial resolution of ~150 μm in less than 4.5 h. The results demonstrate localization of acetylcholine in the primary decidual zone (PDZ) of the implantation site throughout the depth of the tissue examined, indicating an important role of this signaling molecule in decidualization. Choline and phosphocholine—metabolites associated with cell growth— are enhanced in the PDZ and abundant in other cellular regions of the implantation site. Very different 3D distributions were obtained for fatty acids (FA), oleic acid and linoleic acid (FA 18:1 and FA 18:2), differing only by one double bond. Localization of FA 18:2 in the PDZ indicates its important role in decidualization while FA 18:1 is distributed more evenly throughout the tissue. In contrast, several lysophosphatidylcholines (LPC) observed in this study show donut-like distributions with localization around the PDZ. Complementary distributions with minimal overlap were observed for LPC 18:0 and FA 18:2 while the 3D image of the potential precursor phosphatidylcholine 36:2 (PC 36:2) showed a significant overlap with both LPC 18:0 and FA 18:2. PMID:25395201

  13. Target allocation yields for massively multiplexed spectroscopic surveys with fibers

    NASA Astrophysics Data System (ADS)

    Saunders, Will; Smedley, Scott; Gillingham, Peter; Forero-Romero, Jaime E.; Jouvel, Stephanie; Nord, Brian

    2014-08-01

    We present Simulated Annealing fiber-to-target allocation simulations for the proposed DESI and 4MOST massively multiplexed spectroscopic surveys. We simulate various survey strategies, for both Poisson and realistically clustered mock target samples. We simulate both Echidna and theta-phi actuator designs, including the restrictions caused by the physical actuator characteristics during repositioning. For DESI, with theta-phi actuators, used in 5 passes over the sky for a mock ELG/LRG/QSO sample, with matched fiber and target densities, a total target allocation yield of 89.3% was achieved, but only 83.7% for the high-priority Ly-alpha QSOs. If Echidna actuators are used with the same pitch and number of passes, the yield increases to 94.4% and 97.2% respectively, representing fractional gains of 5.7% and 16% respectively. Echidna also allows a factor-of-two increase in the number of close Ly-alpha QSO pairs that can be observed. Echidna spine tilt causes a variable loss of throughput, with average loss being the same as the loss at the rms tilt. The simulated annealing allows spine tilt minimization to be included in the optimization, at some small cost to the yield. With a natural minimization scheme, we find an rms tilt always close to 0.58 x maximum. There is an additional but much smaller defocus loss, equivalent to an average defocus of 30 μm. These tilt losses offset the gains in yield for Echidna, but because the survey strategy is driven by the higher priority targets, a clear survey speed advantage remains. For 4MOST, high and low latitude sample mock catalogs were supplied by the 4MOST team, and allocations were carried out with the proposed Echidna-based positioner geometry. At high latitudes, the resulting target completeness was 85.3% for LR targets and 78.9% for HR targets. At low latitude, the target completeness was 93.9% for LR targets and 71.2% for HR targets.

  14. Three-Dimensional Imaging of Lipids and Metabolites in Tissues by Nanospray Desorption Electrospray Ionization Mass Spectrometry

    SciTech Connect

    Lanekoff, Ingela T.; Burnum-Johnson, Kristin E.; Thomas, Mathew; Cha, Jeeyeon; Dey, Sudhansu K.; yang, Pengxiang; Prieto, Mari; Laskin, Julia

    2015-03-01

    Abstract Three-dimensional (3D) imaging of tissue sections is a new frontier in mass spectrometry imaging (MSI). Here we report on fast 3D imaging of lipids and metabolites associated with mouse uterine decidual cells and embryo at the implantation site on day 6 of pregnancy. 2D imaging of 16-20 serial tissue sections deposited on the same glass slide was performed using nanospray desorption electrospray ionization (nano-DESI) – an ambient ionization technique that enables sensitive localized analysis of analytes on surfaces without special sample pre-treatment. In this proof-of-principle study, nano-DESI was coupled to a high-resolution Q-Exactive instrument operated at high repetition rate of >5 Hz with moderate mass resolution of 35,000 (m/Δm at m/z 200), which enabled acquisition of the entire 3D image with a spatial resolution of ~150 μm in less than 4.5 hours. The results demonstrate localization of acetylcholine in the primary decidual zone (PDZ) of the implantation site throughout the depth of the tissue examined, indicating an important role of this signaling molecule in decidualization. Choline and phosphocholine – metabolites associated with cell growth – are enhanced in the PDZ and abundant in other cellular regions of the implantation site. Very different 3D distributions were obtained for fatty acids (FA), oleic acid and linoleic acid (FA 18:1 and FA 18:2), differing only by one double bond. Localization of FA 18:2 in the PDZ indicates its important role in decidualization while FA 18:1 is distributed more evenly throughout the tissue. In contrast, several lysophosphatidylcholines (LPC) observed in this study show donut-like distributions with localization around the PDZ. Complementary distributions with minimal overlap were observed for LPC 18:0 and FA 18:2 while the 3D image of the potential precursor phosphatidylcholine (PC 36:2) showed a significant overlap with both LPC 18:0 and FA 18:2.

  15. Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.

    PubMed

    Kujur, Alice; Bajaj, Deepak; Upadhyaya, Hari D; Das, Shouvik; Ranjan, Rajeev; Shree, Tanima; Saxena, Maneesha S; Badoni, Saurabh; Kumar, Vinod; Tripathi, Shailesh; Gowda, C L L; Sharma, Shivali; Singh, Sube; Tyagi, Akhilesh K; Parida, Swarup K

    2015-01-01

    The genome-wide discovery and high-throughput genotyping of SNPs in chickpea natural germplasm lines is indispensable to extrapolate their natural allelic diversity, domestication, and linkage disequilibrium (LD) patterns leading to the genetic enhancement of this vital legume crop. We discovered 44,844 high-quality SNPs by sequencing of 93 diverse cultivated desi, kabuli, and wild chickpea accessions using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays that were physically mapped across eight chromosomes of desi and kabuli. Of these, 22,542 SNPs were structurally annotated in different coding and non-coding sequence components of genes. Genes with 3296 non-synonymous and 269 regulatory SNPs could functionally differentiate accessions based on their contrasting agronomic traits. A high experimental validation success rate (92%) and reproducibility (100%) along with strong sensitivity (93-96%) and specificity (99%) of GBS-based SNPs was observed. This infers the robustness of GBS as a high-throughput assay for rapid large-scale mining and genotyping of genome-wide SNPs in chickpea with sub-optimal use of resources. With 23,798 genome-wide SNPs, a relatively high intra-specific polymorphic potential (49.5%) and broader molecular diversity (13-89%)/functional allelic diversity (18-77%) was apparent among 93 chickpea accessions, suggesting their tremendous applicability in rapid selection of desirable diverse accessions/inter-specific hybrids in chickpea crossbred varietal improvement program. The genome-wide SNPs revealed complex admixed domestication pattern, extensive LD estimates (0.54-0.68) and extended LD decay (400-500 kb) in a structured population inclusive of 93 accessions. These findings reflect the utility of our identified SNPs for subsequent genome-wide association study (GWAS) and selective sweep-based domestication trait dissection analysis to identify potential genomic loci (gene-associated targets) specifically regulating

  16. Ethanol extracts of chickpeas alter the total lipid content and expression levels of genes related to fatty acid metabolism in mouse 3T3-L1 adipocytes.

    PubMed

    Shinohara, Shigeo; Gu, Yuanjun; Yang, Ying; Furuta, Yasuo; Tanaka, Masahiko; Yue, Xiaohua; Wang, Weiqing; Kitano, Masaru; Kimura, Hiroshi

    2016-08-01

    Desi-type chickpeas, which have long been used as a natural treatment for diabetes, have been reported to lower visceral adiposity, dyslipidemia and insulin resistance induced by a chronic high-fat diet in rats. In this study, in order to examine the effects of chickpeas of this type in an in vitro system, we used the 3T3-L1 mouse cell line, a subclone of Swiss 3T3 cells, which can differentiate into cells with an adipocyte-like phenotype, and we used ethanol extracts of chickpeas (ECP) instead of chickpeas. Treatment of the 3T3-L1 cells with ECP led to a decrease in the lipid content in the cells. The desaturation index, defined as monounsaturated fatty acids (MUFAs)/saturated fatty acids (SFAs), was also decreased by ECP due to an increase in the cellular content of SFAs and a decrease in the content of MUFAs. The decrease in this index may reflect a decreased reaction from SFA to MUFA, which is essential for fat storage. To confirm this hypothesis, we conducted a western blot analysis, which revealed a reduction in the amount of stearoyl-CoA desaturase 1 (SCD1), a key enzyme catalyzing the reaction from SFA to MUFA. We observed simultaneous inactivations of enzymes participating in lipogenesis, i.e., liver kinase B1 (LKB1), acetyl-CoA carboxylase (ACC) and AMPK, by phosphorylation, which may lead to the suppression of reactions from acetyl-CoA to SFA via malonyl-CoA in lipogenesis. We also investigated whether lipolysis is affected by ECP. The amount of carnitine palmitoyltransferase 1 (CPT1), an enzyme important for the oxidation of fatty acids, was increased by ECP treatment. ECP also led to an increase in uncoupling protein 2 (UCP2), reported as a key protein for the oxidation of fatty acids. All of these results obtained regarding lipogenesis and fatty acid metabolism in our in vitro system are consistent with the results previously shown in rats. We also examined the effects on SCD1 and lipid contents of ethanol extracts of Kabuli

  17. Hydroforming of elliptical cavities

    SciTech Connect

    Singer, W.; Singer, X.; Jelezov, I.; Kneisel, Peter

    2015-02-27

    Activities of the past several years in developing the technique of forming seamless (weldless) cavity cells by hydroforming are summarized. An overview of the technique developed at DESY for the fabrication of single cells and multicells of the TESLA cavity shape is given and the major rf results are presented. The forming is performed by expanding a seamless tube with internal water pressure while simultaneously swaging it axially. Prior to the expansion the tube is necked at the iris area and at the ends. Tube radii and axial displacements are computer controlled during the forming process in accordance with results of finite element method simulations for necking and expansion using the experimentally obtained strain-stress relationship of tube material. In cooperation with industry different methods of niobium seamless tube production have been explored. The most appropriate and successful method is a combination of spinning or deep drawing with flow forming. Several single-cell niobium cavities of the 1.3 GHz TESLA shape were produced by hydroforming. They reached accelerating gradients Eacc up to 35 MV/m after buffered chemical polishing (BCP) and up to 42 MV/m after electropolishing (EP). More recent work concentrated on fabrication and testing of multicell and nine-cell cavities. Several seamless two- and three-cell units were explored. Accelerating gradients Eacc of 30–35 MV/m were measured after BCP and Eacc up to 40 MV/m were reached after EP. Nine-cell niobium cavities combining three three-cell units were completed at the company E. Zanon. These cavities reached accelerating gradients of Eacc = 30–35 MV/m. One cavity is successfully integrated in an XFEL cryomodule and is used in the operation of the FLASH linear accelerator at DESY. Additionally the fabrication of bimetallic single-cell and multicell NbCu cavities by hydroforming was successfully developed. Several NbCu clad single-cell and double

  18. Production of Seamless Superconducting Radio Frequency Cavities from Ultra-fine Grained Niobium, Phase II Final Report

    SciTech Connect

    Roy Crooks, Ph.D., P.E.

    2009-10-31

    The positron and electron linacs of the International Linear Collider (ILC) will require over 14,000, nine-cell, one meter length, superconducting radio frequency (SRF) cavities [ILC Reference Design Report, 2007]. Manufacturing on this scale will benefit from more efficient fabrication methods. The current methods of fabricating SRF cavities involve deep drawing of the halves of each of the elliptical cells and joining them by high-vacuum, electron beam welding, with at least 19 circumferential welds per cavity. The welding is costly and has undesirable effects on the cavity surfaces, including grain-scale surface roughening at the weld seams. Hydroforming of seamless tubes avoids welding, but hydroforming of coarse-grained seamless tubes results in strain-induced surface roughening. Surface roughness limits accelerating fields, because asperities prematurely exceed the critical magnetic field and become normal conducting. This project explored the technical and economic feasibility of an improved processing method for seamless tubes for hydroforming. Severe deformation of bulk material was first used to produce a fine structure, followed by extrusion and flow-forming methods of tube making. Extrusion of the randomly oriented, fine-grained bulk material proceeded under largely steady-state conditions, and resulted in a uniform structure, which was found to be finer and more crystallographically random than standard (high purity) RRR niobium sheet metal. A 165 mm diameter billet of RRR grade niobium was processed into five, 150 mm I.D. tubes, each over 1.8 m in length, to meet the dimensions used by the DESY ILC hydroforming machine. Mechanical properties met specifications. Costs of prototype tube production were approximately twice the price of RRR niobium sheet, and are expected to be comparable with economies of scale. Hydroforming and superconducting testing will be pursued in subsequent collaborations with DESY and Fermilab. SRF Cavities are used to construct

  19. The Climate-G Portal: a scientific gateway for climate change

    NASA Astrophysics Data System (ADS)

    Fiore, S.; Aloisio, G.; Blower, J. D.; Cofino, A.; Denvil, S.; Fox, P. A.; Petitdidier, M.; Schwichtenberg, H.

    2010-12-01

    Climate-G is a data-oriented research effort conceived in the context of the EGEE Earth Science Cluster and devoted to the Climate Change community. The testbed is an interdisciplinary effort joining expertise in the field of climate change and computational science. The main goal of Climate-G is to allow scientists carrying out geographical and cross-institutional data discovery, access, visualization and sharing of climate data. The involved partners are: Centro Euro-Mediterraneo per i Cambiamenti Climatici (CMCC, Italy), Institut Pierre-Simon Laplace (IPSL/CNRS, France), Fraunhofer Institut für Algorithmen und Wissenschaftliches Rechnen (SCAI, Germany), National Center for Atmospheric Research (NCAR, USA) and Rensselaer Polytechnic Institute (RPI, USA), University of Reading (Reading, UK), University of Cantabria (UC, Spain), and University of Salento (UniSalento, Italy). The main results of this testbed are the distributed data/metadata architecture (exploiting the GRelC service) and the scientific gateway of the testbed (Climate-G Portal). The latter is a central topic of this contribution. Data distribution comes from the need of sharing data among centres without moving it into a central repository. Each partner can contribute with new datasets to the testbed just adding a new data service into the infrastructure and mapping it on a specific metadata server. The metadata management plays a critical role in such a distributed environment, since it enables search and discovery activities, allows describing and cataloguing datasets, makes data effectively accessible and shareable by the scientific community. The novel grid enabled harvesting system will be presented and discussed showing a map-enabled search page providing aggregated metadata information. Climate-G exploits both grid technologies connected with the EGEE project and domain-based tools and services. The general grid services provide a solid basis at an infrastructural level ensuring great

  20. The story of landscape evolution in Lower Austria told by sedimentological analysis and luminescence dating

    NASA Astrophysics Data System (ADS)

    Hofer, Ingo; Thiel, Christine; Terhorst, Birgit; Jaburova, Iva; Buylaert, Jan-Pieter; Murray, Andrew; Frechen, Manfred

    2010-05-01

    Osten Österreichs. Wissenschaftliche Schriftenreihe Niederösterreich 95/96/97 (St. Pölten). Thiel, C., Buylaert, J. P., Terhorst, B., Murray, A. S., Hofer, I., Tsukamoto, S., Frechen, M., submitted. Luminescence dating of the Stratzing loess profile (Austria) - Testing the potential of an elevated temperature post-IR IRSL protocol. Quaternary International.