Scanning transmission X-ray, laser scanning, and transmission electron microscopy mapping of the exopolymeric matrix of microbial biofilms.

PubMed

Lawrence, J R; Swerhone, G D W; Leppard, G G; Araki, T; Zhang, X; West, M M; Hitchcock, A P

2003-09-01

Confocal laser scanning microscopy (CLSM), transmission electron microscopy (TEM), and soft X-ray scanning transmission X-ray microscopy (STXM) were used to map the distribution of macromolecular subcomponents (e.g., polysaccharides, proteins, lipids, and nucleic acids) of biofilm cells and matrix. The biofilms were developed from river water supplemented with methanol, and although they comprised a complex microbial community, the biofilms were dominated by heterotrophic bacteria. TEM provided the highest-resolution structural imaging, CLSM provided detailed compositional information when used in conjunction with molecular probes, and STXM provided compositional mapping of macromolecule distributions without the addition of probes. By examining exactly the same region of a sample with combinations of these techniques (STXM with CLSM and STXM with TEM), we demonstrate that this combination of multimicroscopy analysis can be used to create a detailed correlative map of biofilm structure and composition. We are using these correlative techniques to improve our understanding of the biochemical basis for biofilm organization and to assist studies intended to investigate and optimize biofilms for environmental remediation applications.

Geological analysis of parts of the southern Arabian Shield based on Landsat imagery

NASA Astrophysics Data System (ADS)

Qari, Mohammed Yousef Hedaytullah T.

This thesis examines the capability and applicability of Landsat multispectral remote sensing data for geological analysis in the arid southern Arabian Shield, which is the eastern segment of the Nubian-Arabian Shield surrounding the Red Sea. The major lithologies in the study area are Proterozoic metavolcanics, metasediments, gneisses and granites. Three test-sites within the study area, located within two tectonic assemblages, the Asir Terrane and the Nabitah Mobile Belt, were selected for detailed comparison of remote sensing methods and ground geological studies. Selected digital image processing techniques were applied to full-resolution Landsat TM imagery and the results are interpreted and discussed. Methods included: image contrast improvement, edge enhancement for detecting lineaments and spectral enhancement for geological mapping. The last method was based on two principles, statistical analysis of the data and the use of arithmetical operators. New and detailed lithological and structural maps were constructed and compared with previous maps of these sites. Examples of geological relations identified using TM imagery include: recognition and mapping of migmatites for the first time in the Arabian Shield; location of the contact between the Asir Terrane and the Nabitah Mobile Belt; and mapping of lithologies, some of which were not identified on previous geological maps. These and other geological features were confirmed by field checking. Methods of lineament enhancement implemented in this study revealed structural lineaments, mostly mapped for the first time, which can be related to regional tectonics. Structural analysis showed that the southern Arabian Shield has been affected by at least three successive phases of deformation. The third phase is the most dominant and widespread. A crustal evolutionary model in the vicinity of the study area is presented showing four stages, these are: arc stage, accretion stage, collision stage and post-collision stage. The results of this study demonstrate that Landsat TM data can be used reliably for geological investigations in the Arabian Shield and comparable areas, particularly to generate detailed geological maps over large areas by using quantitative remote sensing methods, providing there is prior knowledge of part of the area.

Three-Dimensional Geologic Framework Model for a Karst Aquifer System, Hasty and Western Grove Quadrangles, Northern Arkansas

USGS Publications Warehouse

Turner, Kenzie J.; Hudson, Mark R.; Murray, Kyle E.; Mott, David N.

2007-01-01

Understanding ground-water flow in a karst aquifer benefits from a detailed conception of the three-dimensional (3D) geologic framework. Traditional two-dimensional products, such as geologic maps, cross-sections, and structure contour maps, convey a mental picture of the area but a stronger conceptualization can be achieved by constructing a digital 3D representation of the stratigraphic and structural geologic features. In this study, a 3D geologic model was created to better understand a karst aquifer system in the Buffalo National River watershed in northern Arkansas. The model was constructed based on data obtained from recent, detailed geologic mapping for the Hasty and Western Grove 7.5-minute quadrangles. The resulting model represents 11 stratigraphic zones of Ordovician, Mississippian, and Pennsylvanian age. As a result of the highly dissected topography, stratigraphic and structural control from geologic contacts and interpreted structure contours were sufficient for effectively modeling the faults and folds in the model area. Combined with recent dye-tracing studies, the 3D framework model is useful for visualizing the various geologic features and for analyzing the potential control they exert on the ground-water flow regime. Evaluation of the model, by comparison to published maps and cross-sections, indicates that the model accurately reproduces both the surface geology and subsurface geologic features of the area.

Airborne laser swath mapping of the Denton Hills, Transantarctic Mountains, Antarctica: Applications for structural and glacial geomorphic mapping

USGS Publications Warehouse

Wilson, Terry; Csathó, Beata

2007-01-01

High-resolution digital elevation data acquired by airborne laser scanning (ALS) for the Denton Hills, along the coastal foothills of the Royal Society Range, Transantarctic Mountains, are examined for applications to bedrock and glacial geomorphic mapping. Digital elevation models (DEMs), displayed as shaded-relief images and slope maps, portray geomorphic landscape features in unprecedented detail across the region. Structures of both ductile and brittle origin, ranging in age from the Paleozoic to the Quaternary, can be mapped from the DEMs. Glacial features, providing a record of the limits of grounded ice, of lake paleoshorelines, and of proglacial lake-ice conveyor deposits, are also prominent on the DEMs. The ALS-derived topographic data have great potential for a range of mapping applications in regions of ice-free terrain in Antarctica

Evaluation of EREP techniques for geological mapping. [southern Pyrenees and Ebro basin in Spain

NASA Technical Reports Server (NTRS)

Vandermeermohr, H. E. C.; Srivastava, G. S. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Skylab photographs may be successfully utilized for preparing a reconnaissance geological map in the areas where no maps or semi-detailed maps exist. Large coverage of area and regional perspective from Skylab photographs can help better coordination in regional mapping. It is possible to delineate major structural trends and other features like mega-lineaments, geofractures, and faults, which have evaded their detection by conventional methods. The photointerpretability is better in areas dominated by sedimentary rocks. Rock units of smaller extent and having poor geomorphic expressions are difficult to map. Demarcation of quaternary river alluvium can be made with better precision and ease with the Skylab photographs. Stereoscopic viewing greatly helps in interpretation of area structures. Skylab photographs are not good for preparing geological maps larger than 1:270,000 scale.

A Possible Buried Impact Structure Near Bow City, Alberta

NASA Astrophysics Data System (ADS)

Xie, W.; Glombick, P.; Schmitt, D. R.; Bown, T. D.

2012-12-01

In recent years, improved exploration techniques have resulted in the serendipitous discoveries of increasing numbers of extraterrestrial impact structures in sedimentary basins around the world. Following in this tradition, a new potential impact structure centered near 50.4°N, 112.35°N in SE Alberta has been identified. The first indications of this structure appeared in careful systematic mapping of Cretaceous age sediments using public domain well log information that showed overturned and missing components in what regionally is a simple layered stratigraphy. This motivated the examination of legacy 2D seismic profiles over the area that confirmed the stratigraphic anomalies and provided new details that further supported interpretation of a potential impact structure. Further, the existence of unexpected faults through the Cretaceous Bearpaw formation had been noted as early as the 1940's in the limited outcrop available in coulees, and these as well as other complex fault structures along the Bow River outcrops were confirmed in recent field visits to the site. The 2D seismic data displays a number of listric and rose-petal faulting consistent with late stage collapse of the impact crater. Further, a seismically transparent central uplift peak is visible. Based on the results, the structure is recognized as a complex crater with a diameter of approximately 8 kilometers and, today, bottoming at a depth of 900 meters from the current surface. Currently, the age of the feature is grossly estimated to be less than 70 my on the basis of underlying undisturbed seismic reflectors. The structure may be somewhat unique in that weak coals surrounding the feature are clearly thickened indicating outward lateral sliding along shear planes through weaker layers. Work in progress includes acquisition of a high resolution seismic profile and detailed mapping of the magnetic and gravity potential fields. More detailed mapping will include searches for shock metamorphism and melt although it is not likely that this will be seen in the current outcrop. Drilling may be necessary to confirm details of the structure.

Geologic Map of the Umiat Quadrangle, Alaska

USGS Publications Warehouse

Mull, Charles G.; Houseknecht, David W.; Pessel, G.H.; Garrity, Christopher P.

2004-01-01

This geologic map of the Umiat quadrangle is a compilation of previously published USGS geologic maps and unpublished mapping done for the Richfield Oil Corporation. Geologic mapping from these three primary sources was augmented with additional unpublished map data from British Petroleum Company. This report incorporates recent revisions in stratigraphic nomenclature. Stratigraphic and structural interpretations were revised with the aid of modern high-resolution color infrared aerial photographs. The revised geologic map was checked in the field during the summers of 2001 and 2002. The geologic unit descriptions on this map give detailed information on thicknesses, regional distributions, age determinations, and depositional environments. The paper version of this map is available for purchase from the USGS Store.

Structure and shale gas production patterns from eastern Kentucky field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shumaker, R.C.

Computer-derived subsurface structure, isopach, and gas-flow maps, based on 4000 drillers logs, have been generated for eastern Kentucky under a project sponsored by the Gas Research Institute. Structure maps show low-relief flextures related to basement structure. Some structures have been mapped at the surface, others have not. Highest final open-flow (fof) of shale gas from wells in Martin County follow a structural low between (basement) anticlines. From there, elevated gas flows (fof) extend westward along the Warfield monocline to Floyd County where the high flow (fof) trend extends southward along the Floyd County channel. In Knott County, the number ofmore » wells with high gas flow (fof) decreases abruptly. The center of highest gas flow (fof) in Floyd County spreads eastward to Pike County, forming a triangular shaped area of high production (fof). The center of highest gas flow (fof) is in an area where possible (basement) structure trends intersect and where low-relief surface folds (probably detached structure) were mapped and shown on the 1922 version of the Floyd County structure map. Modern regional maps, based on geophysical logs from widely spaced wells, do not define the low-relief structures that have been useful in predicting gas flow trends. Detailed maps based on drillers logs can be misleading unless carefully edited. Comparative analysis of high gas flows (fof) and 10-year cumulative production figures in a small area confirms that there is a relationship between gas flow (fof) values and long-term cumulative production.« less

Mapping protein-RNA interactions by RCAP, RNA-cross-linking and peptide fingerprinting.

PubMed

Vaughan, Robert C; Kao, C Cheng

2015-01-01

RNA nanotechnology often feature protein RNA complexes. The interaction between proteins and large RNAs are difficult to study using traditional structure-based methods like NMR or X-ray crystallography. RCAP, an approach that uses reversible-cross-linking affinity purification method coupled with mass spectrometry, has been developed to map regions within proteins that contact RNA. This chapter details how RCAP is applied to map protein-RNA contacts within virions.

Predicting temperate forest stand types using only structural profiles from discrete return airborne lidar

NASA Astrophysics Data System (ADS)

Fedrigo, Melissa; Newnham, Glenn J.; Coops, Nicholas C.; Culvenor, Darius S.; Bolton, Douglas K.; Nitschke, Craig R.

2018-02-01

Light detection and ranging (lidar) data have been increasingly used for forest classification due to its ability to penetrate the forest canopy and provide detail about the structure of the lower strata. In this study we demonstrate forest classification approaches using airborne lidar data as inputs to random forest and linear unmixing classification algorithms. Our results demonstrated that both random forest and linear unmixing models identified a distribution of rainforest and eucalypt stands that was comparable to existing ecological vegetation class (EVC) maps based primarily on manual interpretation of high resolution aerial imagery. Rainforest stands were also identified in the region that have not previously been identified in the EVC maps. The transition between stand types was better characterised by the random forest modelling approach. In contrast, the linear unmixing model placed greater emphasis on field plots selected as endmembers which may not have captured the variability in stand structure within a single stand type. The random forest model had the highest overall accuracy (84%) and Cohen's kappa coefficient (0.62). However, the classification accuracy was only marginally better than linear unmixing. The random forest model was applied to a region in the Central Highlands of south-eastern Australia to produce maps of stand type probability, including areas of transition (the 'ecotone') between rainforest and eucalypt forest. The resulting map provided a detailed delineation of forest classes, which specifically recognised the coalescing of stand types at the landscape scale. This represents a key step towards mapping the structural and spatial complexity of these ecosystems, which is important for both their management and conservation.

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

PubMed

Zhang, Kaiming; Keane, Sarah C; Su, Zhaoming; Irobalieva, Rossitza N; Chen, Muyuan; Van, Verna; Sciandra, Carly A; Marchant, Jan; Heng, Xiao; Schmid, Michael F; Case, David A; Ludtke, Steven J; Summers, Michael F; Chiu, Wah

2018-03-06

Cryoelectron microscopy (cryo-EM) and nuclear magnetic resonance (NMR) spectroscopy are routinely used to determine structures of macromolecules with molecular weights over 65 and under 25 kDa, respectively. We combined these techniques to study a 30 kDa HIV-1 dimer initiation site RNA ([DIS] 2 ; 47 nt/strand). A 9 Å cryo-EM map clearly shows major groove features of the double helix and a right-handed superhelical twist. Simulated cryo-EM maps generated from time-averaged molecular dynamics trajectories (10 ns) exhibited levels of detail similar to those in the experimental maps, suggesting internal structural flexibility limits the cryo-EM resolution. Simultaneous inclusion of the cryo-EM map and 2 H-edited NMR-derived distance restraints during structure refinement generates a structure consistent with both datasets and supporting a flipped-out base within a conserved purine-rich bulge. Our findings demonstrate the power of combining global and local structural information from these techniques for structure determination of modest-sized RNAs. Copyright © 2018 Elsevier Ltd. All rights reserved.

Failure Analysis of Composite Structure Materials.

DTIC Science & Technology

1987-05-27

cracking intersected the trailing edge of the skin at a radius for a runout of an overhanging tab. Extensive delamination was evident or each side of...structure with an abrasive cutoff wheel to minimize artifacts. Detailed crack mapping of the delamination surfaces was performed by optical microscopy

Applied cartographic communication: map symbolization for atlases.

USGS Publications Warehouse

Morrison, J.L.

1984-01-01

A detailed investigation of the symbolization used on general-purpose atlas reference maps. It indicates how theories of cartographic communication can be put into practice. Two major points emerge. First, that a logical scheme can be constructed from existing cartographic research and applied to an analysis of the choice of symbolization on a map. Second, the same structure appears to allow the cartographer to specify symbolization as a part of map design. An introductory review of cartographic communication is followed by an analysis of selected maps' usage of point, area and line symbols, boundaries, text and colour usage.-after Author

Mars Structural and Stratigraphic Mapping along the Coprates Rise

NASA Technical Reports Server (NTRS)

Saunders, R Stephen

2009-01-01

This geologic mapping project supports a topical study of structures in east Thaumasia associated with the Coprates rise. The study examines cuesta-like features on the east flank of the Coprates rise first identified by Saunders et al. [1]. Mapping combines detailed local stratigraphy, structural geology and topography. Hogbacks and cuestas indicate erosion of tilted rock units. The extent of the erosion will be determined in the course of the mapping. The region of interest lies along the eastern margin of Thaumasia bounded by latitudes -15 and -35 and longitudes 50 to 70 W (Figure 1). Three MTM geologic quadrangles are being compiled for publication by the USGS (-20057, -25057, -30057). All existing data sources are used including THEMIS, MOC, CTX, HiRISE, MOLA and gravity, as well as higher level data available through the PDS data nodes at ASU, UA and Washington University. The extremely valuable ASU JMARS tools are used for analysis of many of the data sets. ArcGIS software has been obtained and is being learned for the map compilation.

Geologic map of the Reyes Peak quadrangle, Ventura County, California

USGS Publications Warehouse

Minor, Scott A.

2004-01-01

New 1:24,000-scale geologic mapping in the Cuyama 30' x 60' quadrangle, in support of the USGS Southern California Areal Mapping Project (SCAMP), is contributing to a more complete understanding of the stratigraphy, structure, and tectonic evolution of the complex junction area between the NW-trending Coast Ranges and EW-trending western Transverse Ranges. The 1:24,000-scale geologic map of the Reyes Peak quadrangle, located in the eastern part of the Cuyama map area, is the final of six contiguous 7 ?' quadrangle geologic maps compiled for a more detailed portrayal and reevaluation of geologic structures and rock units shown on previous maps of the region (Carman, 1964; Dibblee, 1972; Vedder and others, 1973). SCAMP digital geologic maps of the five other contiguous quadrangles have recently been published (Minor, 1999; Kellogg, 1999, 2003; Stone and Cossette, 2000; Kellogg and Miggins, 2002). This digital compilation presents a new geologic map database for the Reyes Peak 7?' quadrangle, which is located in southern California about 75 km northwest of Los Angeles. The map database is at 1:24,000-scale resolution.

Coastal habitat mapping in the Aegean Sea using high resolution orthophoto maps

NASA Astrophysics Data System (ADS)

Topouzelis, Konstantinos; Papakonstantinou, Apostolos; Doukari, Michaela; Stamatis, Panagiotis; Makri, Despina; Katsanevakis, Stelios

2017-09-01

The significance of coastal habitat mapping lies in the need to prevent from anthropogenic interventions and other factors. Until 2015, Landsat-8 (30m) imagery were used as medium spatial resolution satellite imagery. So far, Sentinel-2 satellite imagery is very useful for more detailed regional scale mapping. However, the use of high resolution orthophoto maps, which are determined from UAV data, is expected to improve the mapping accuracy. This is due to small spatial resolution of the orthophoto maps (30 cm). This paper outlines the integration of UAS for data acquisition and Structure from Motion (SfM) pipeline for the visualization of selected coastal areas in the Aegean Sea. Additionally, the produced orthophoto maps analyzed through an object-based image analysis (OBIA) and nearest-neighbor classification for mapping the coastal habitats. Classification classes included the main general habitat types, i.e. seagrass, soft bottom, and hard bottom The developed methodology applied at the Koumbara beach (Ios Island - Greece). Results showed that UAS's data revealed the sub-bottom complexity in large shallow areas since they provide such information in the spatial resolution that permits the mapping of seagrass meadows with extreme detail. The produced habitat vectors are ideal as reference data for studies with satellite data of lower spatial resolution.

Fine resolution mapping of population age-structures for health and development applications.

PubMed

Alegana, V A; Atkinson, P M; Pezzulo, C; Sorichetta, A; Weiss, D; Bird, T; Erbach-Schoenberg, E; Tatem, A J

2015-04-06

The age-group composition of populations varies considerably across the world, and obtaining accurate, spatially detailed estimates of numbers of children under 5 years is important in designing vaccination strategies, educational planning or maternal healthcare delivery. Traditionally, such estimates are derived from population censuses, but these can often be unreliable, outdated and of coarse resolution for resource-poor settings. Focusing on Nigeria, we use nationally representative household surveys and their cluster locations to predict the proportion of the under-five population in 1 × 1 km using a Bayesian hierarchical spatio-temporal model. Results showed that land cover, travel time to major settlements, night-time lights and vegetation index were good predictors and that accounting for fine-scale variation, rather than assuming a uniform proportion of under 5 year olds can result in significant differences in health metrics. The largest gaps in estimated bednet and vaccination coverage were in Kano, Katsina and Jigawa. Geolocated household surveys are a valuable resource for providing detailed, contemporary and regularly updated population age-structure data in the absence of recent census data. By combining these with covariate layers, age-structure maps of unprecedented detail can be produced to guide the targeting of interventions in resource-poor settings.

A Configurational-Bias-Monte-Carlo Back-Mapping Algorithm for Efficient and Rapid Conversion of Coarse-Grained Water Structures Into Atomistic Models.

PubMed

Loeffler, Troy David; Chan, Henry; Narayanan, Badri; Cherukara, Mathew J; Gray, Stephen K; Sankaranarayanan, Subramanian K R S

2018-06-20

Coarse-grained molecular dynamics (MD) simulations represent a powerful approach to simulate longer time scale and larger length scale phenomena than those accessible to all-atom models. The gain in efficiency, however, comes at the cost of atomistic details. The reverse transformation, also known as back-mapping, of coarse grained beads into their atomistic constituents represents a major challenge. Most existing approaches are limited to specific molecules or specific force-fields and often rely on running a long time atomistic MD of the back-mapped configuration to arrive at an optimal solution. Such approaches are problematic when dealing with systems with high diffusion barriers. Here, we introduce a new extension of the configurational-bias-Monte-Carlo (CBMC) algorithm, which we term the crystalline-configurational-bias-Monte-Carlo (C-CBMC) algortihm, that allows rapid and efficient conversion of a coarse-grained model back into its atomistic representation. Although the method is generic, we use a coarse-grained water model as a representative example and demonstrate the back-mapping or reverse transformation for model systems ranging from the ice-liquid water interface to amorphous and crystalline ice configurations. A series of simulations using the TIP4P/Ice model are performed to compare the new CBMC method to several other standard Monte Carlo and Molecular Dynamics based back-mapping techniques. In all the cases, the C-CBMC algorithm is able to find optimal hydrogen bonded configuration many thousand evaluations/steps sooner than the other methods compared within this paper. For crystalline ice structures such as a hexagonal, cubic, and cubic-hexagonal stacking disorder structures, the C-CBMC was able to find structures that were between 0.05 and 0.1 eV/water molecule lower in energy than the ground state energies predicted by the other methods. Detailed analysis of the atomistic structures show a significantly better global hydrogen positioning when contrasted with the existing simpler back-mapping methods. Our results demonstrate the efficiency and efficacy of our new back-mapping approach, especially for crystalline systems where simple force-field based relaxations have a tendency to get trapped in local minima.

Geologic Map of the Thaumasia Region, Mars

USGS Publications Warehouse

Dohm, Janes M.; Tanaka, Kenneth L.; Hare, Trent M.

2001-01-01

The geology of the Thaumasia region (fig. 1, sheet 3) includes a wide array of rock materials, depositional and erosional landforms, and tectonic structures. The region is dominated by the Thaumasia plateau, which includes central high lava plains ringed by highly deformed highlands; the plateau may comprise the ancestral center of Tharsis tectonism (Frey, 1979; Plescia and Saunders, 1982). The extensive structural deformation of the map region, which is without parallel on Mars in both complexity and diversity, occurred largely throughout the Noachian and Hesperian periods (Tanaka and Davis, 1988; Scott and Dohm, 1990a). The deformation produced small and large extensional and contractional structures (fig. 2, sheet 3) that resulted from stresses related to the formation of Tharsis (Frey, 1979; Wise and others, 1979; Plescia and Saunders, 1982; Banerdt and others, 1982, 1992; Watters and Maxwell, 1986; Tanaka and Davis, 1988; Francis, 1988; Watters, 1993; Schultz and Tanaka, 1994), from magmatic-driven uplifts, such as at Syria Planum (Tanaka and Davis, 1988; Dohm and others, 1998; Dohm and Tanaka, 1999) and central Valles Marineris (Dohm and others, 1998, Dohm and Tanaka, 1999), and from the Argyre impact (Wilhelms, 1973; Scott and Tanaka, 1986). In addition, volcanic, eolian, and fluvial processes have highly modified older surfaces in the map region. Local volcanic and tectonic activity often accompanied episodes of valley formation. Our mapping depicts and describes the diverse terrains and complex geologic history of this unique ancient tectonic region of Mars. The geologic (sheet 1), paleotectonic (sheet 2), and paleoerosional (sheet 3) maps of the Thaumasia region were compiled on a Viking 1:5,000,000-scale digital photomosaic base. The base is a combination of four quadrangles: the southeast part of Phoenicis Lacus (MC–17), most of the southern half of Coprates (MC–18), a large part of Thaumasia (MC–25), and the northwest margin of Argyre (MC–26). The medium-resolution Viking images used for mapping and base preparation also formed the basis of the 1:2,000,000 scale subquadrangle series. Earlier geologic maps of all or parts of the region include: (1) maps of the Phoenicis Lacus, Coprates, Thaumasia, and Argyre quadrangles at 1:5,000,000 scale based mainly on Mariner 9 images (respectively, Masursky and others, 1978; McCauley, 1978; McGill, 1978; and Hodges, 1980), (2) the global map of Mars at 1:25,000,000 (Scott and Carr, 1978) compiled largely from the 1:5,000,000 scale geologic maps, (3) maps showing lava flows in the Tharsis region at 1:2,000,000 scale compiled from Viking and Mariner 9 images (Scott, 1981; Scott and Tanaka, 1981a, b; Scott and others, 1981), (4) the map of the western equatorial region of Mars at 1:15,000,000 scale based on Viking images (Scott and Tanaka, 1986), and (5) the map of the Valles Marineris region at 1:2,000,000 scale compiled from Viking images (Witbeck and others, 1991). The previous maps have described the overall geology and geomorphology of the region but have not unraveled the detailed stratigraphy and complex evolution of this unique and geologically diverse martian province. The main purpose of this comprehensive mapping project is to reconstruct the stratigraphic, structural, and erosional histories of the Thaumasia region. The region is the last major province of the Tharsis region to undergo detailed structural mapping using Viking images; its history is essential to documenting the overall tectonic history of Tharsis. Other provinces of Tharsis that have been structurally mapped include Syria Planum (Tanaka and Davis, 1988), Tempe Terra and Ulysses Patera (Scott and Dohm, 1990b), and Alba Patera (Tanaka, 1990). Another primary mapping objective is to determine the region's volcanic history and assess the relations among fault systems and volcanoes (Wise and others, 1979; Scott and Tanaka, 1980; Whitford-Stark, 1982; Scott and Dohm, 1990a). A secondary mapping objective is to determine the distribution and ages of valleys. In our study, we incorporated detailed photogeologic mapping, comprehensive crater statistics (table 1), and geologic, paleotectonic, and paleoerosional Geographic Information System (GIS) databases. Sheets 1–3 show geologic units, faults and other significant structures, and valleys, respectively. To help unravel the complex geologic history of the Thaumasia region, we transferred the highly detailed geologic unit, paleotectonic, and paleoerosional information of sheets 1–3 into a multilayered GIS database for comparative analysis. The geologic information was transferred from hard copy into a digital format by scanning at 25 micron resolution on a drum scanner. The 2-bit scanned image was then converted to an x,y coordinate system using ARC/INFO's vectorization routine. The geologic unit, structural, and erosional data were transformed into the original map projection, Lambert Conformal. The average transformation root mean square error was 0.25 km (acceptable for the Thaumasia map base at 1:5,000,000 scale). After transformation, the features were properly attributed and tediously checked. Once digitized, the map data can be transformed into any map projection depending on the type of data analysis. For example, the equal-area sinusoidal projection was used for determining the precise area of geologic units (table 1). In addition to the geologic map and its attendant stratigraphic section, correlation chart, and description of map units, we include text sections that clarify the histories and temporal, spatial, and causal relations of the various geologic units and landforms of the Thaumasia region. The geologic summary section defines the sequence of major geologic events.

Detailed interpretation of aeromagnetic data from the Patagonia Mountains area, southeastern Arizona

USGS Publications Warehouse

Bultman, Mark W.

2015-01-01

Euler deconvolution depth estimates derived from aeromagnetic data with a structural index of 0 show that mapped faults on the northern margin of the Patagonia Mountains generally agree with the depth estimates in the new geologic model. The deconvolution depth estimates also show that the concealed Patagonia Fault southwest of the Patagonia Mountains is more complex than recent geologic mapping represents. Additionally, Euler deconvolution depth estimates with a structural index of 2 locate many potential intrusive bodies that might be associated with known and unknown mineralization.

Mapping the magnetic and crystal structure in cobalt nanowires

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cantu-Valle, Jesus; Betancourt, Israel; Sanchez, John E.

2015-07-14

Using off-axis electron holography under Lorentz microscopy conditions to experimentally determine the magnetization distribution in individual cobalt (Co) nanowires, and scanning precession-electron diffraction to obtain their crystalline orientation phase map, allowed us to directly visualize with high accuracy the effect of crystallographic texture on the magnetization of nanowires. The influence of grain boundaries and disorientations on the magnetic structure is correlated on the basis of micromagnetic analysis in order to establish the detailed relationship between magnetic and crystalline structure. This approach demonstrates the applicability of the method employed and provides further understanding on the effect of crystalline structure on magneticmore » properties at the nanometric scale.« less

Applicability of ERTS-1 to Montana geology

NASA Technical Reports Server (NTRS)

Weidman, R. M. (Principal Investigator); Alt, D. D.; Berg, R. A.; Johns, W. M.; Flood, R. E.; Hawley, K. T.; Wackwitz, L. K.

1973-01-01

The author has identified the following significant results. A detailed band 7 ERTS-1 lineament map covering western Montana and northern Idaho has been prepared and is being evaluated by direct comparison with geologic maps, by statistical plots of lineaments and known faults, and by field checking. Lineament patterns apparent in the Idaho and Boulder batholiths do not correspond to any known geologic structures. A band 5 mosaic of Montana and adjacent areas has been laid and a lineament annotation prepared for comparison with the band 7 map. All work to date indicates that ERTS-1 imagery is very useful for revealing patterns of high-angle faults, though much less useful for mapping rock units and patterns of low-angle faults. Large-scale mosaics of U-2 photographs of three test sites have been prepared for annotation and comparison with ERTS-1 maps. Mapping of Quaternary deposits in the Glacial Lake Missoula basin using U-2 color infrared transparencies has been successful resulting in the discovery of some deposits not previously mapped. Detailed work has been done for Test Site 354 D using ERTS-1 imagery; criteria for recognition of several rock types have been found. Photogeologic mapping for southeastern Montana suggest Wasatch deposits where none shown of geologic map.

Interdisciplinary applications and interpretations of ERTS data within the Susquehanna River basin

NASA Technical Reports Server (NTRS)

Mcmurtry, G. J.; Petersen, G. W. (Principal Investigator)

1975-01-01

The author has identified the following significant results. The full potential of high quality data is achieved only with the application of efficient and effective interpretation techniques. An excellent operating system for handling, processing, and interpreting ERTS-1 and other MSS data was achieved. Programs for processing digital data are implemented on a large nondedicated general purpose computer. Significant results were attained in mapping land use, agricultural croplands, forest resources, and vegetative cover. Categories of land use classified and mapped depend upon the geographic location, the detail required, and the types of lands use of interest. Physiographic and structural provinces are spectacularly displayed on ERTS-1 MSS image mosaics. Geologic bedrock structures show up well and formation contacts can sometimes be traced for hundreds of kilometers. Large circular structures and regional features, previously obscured by the detail of higher resolution data, can be seen. Environmental monitoring was performed in three areas: coal strip mining, coal refuse problems, and damage to vegetation caused by insects and pollution.

Integrating prior information into microwave tomography Part 1: Impact of detail on image quality.

PubMed

Kurrant, Douglas; Baran, Anastasia; LoVetri, Joe; Fear, Elise

2017-12-01

The authors investigate the impact that incremental increases in the level of detail of patient-specific prior information have on image quality and the convergence behavior of an inversion algorithm in the context of near-field microwave breast imaging. A methodology is presented that uses image quality measures to characterize the ability of the algorithm to reconstruct both internal structures and lesions embedded in fibroglandular tissue. The approach permits key aspects that impact the quality of reconstruction of these structures to be identified and quantified. This provides insight into opportunities to improve image reconstruction performance. Patient-specific information is acquired using radar-based methods that form a regional map of the breast. This map is then incorporated into a microwave tomography algorithm. Previous investigations have demonstrated the effectiveness of this approach to improve image quality when applied to data generated with two-dimensional (2D) numerical models. The present study extends this work by generating prior information that is customized to vary the degree of structural detail to facilitate the investigation of the role of prior information in image formation. Numerical 2D breast models constructed from magnetic resonance (MR) scans, and reconstructions formed with a three-dimensional (3D) numerical breast model are used to assess if trends observed for the 2D results can be extended to 3D scenarios. For the blind reconstruction scenario (i.e., no prior information), the breast surface is not accurately identified and internal structures are not clearly resolved. A substantial improvement in image quality is achieved by incorporating the skin surface map and constraining the imaging domain to the breast. Internal features within the breast appear in the reconstructed image. However, it is challenging to discriminate between adipose and glandular regions and there are inaccuracies in both the structural properties of the glandular region and the dielectric properties reconstructed within this structure. Using a regional map with a skin layer only marginally improves this situation. Increasing the structural detail in the prior information to include internal features leads to reconstructions for which the interface that delineates the fat and gland regions can be inferred. Different features within the glandular region corresponding to tissues with varying relative permittivity values, such as a lesion embedded within glandular structure, emerge in the reconstructed images. Including knowledge of the breast surface and skin layer leads to a substantial improvement in image quality compared to the blind case, but the images have limited diagnostic utility for applications such as tumor response tracking. The diagnostic utility of the reconstruction technique is improved considerably when patient-specific structural information is used. This qualitative observation is supported quantitatively with image metrics. © 2017 American Association of Physicists in Medicine.

Downscaling Indicators of Forest Habitat Structure from National Assessments

Treesearch

Kurt H. Riitters

2005-01-01

Downscaling is an important problem because consistent large-area assessments of forest habitat structure, while feasible, are only feasible when using relatively coarse data and indicators. Techniques are needed to enable more detailed and local interpretations of the national statistics. Using the results of national assessments from land-cover maps, this paper...

Geologic maps of the eastern Alaska Range, Alaska (1:63,360 scale)

USGS Publications Warehouse

Nokleberg, Warren J.; Aleinikoff, John N.; Bond, Gerard C.; Ferrians, Oscar J.; Herzon, Paige L.; Lange, Ian M.; Miyaoka, Ronny T.; Richter, Donald H.; Schwab, Carl E.; Silva, Steven R.; Smith, Thomas E.; Zehner, Richard E.

2015-01-01

This report provides a description of map units for a suite of 44 inch-to-mile (1:63,360-scale) geologic quadrangle maps of the eastern Alaska Range. This report also contains a geologic and tectonic summary and a comprehensive list of references pertaining to geologic mapping and specialized studies of the region. In addition to the geologic maps of the eastern Alaska Range, this package includes a list of map units and an explanation of map symbols and abbreviations. The geologic maps display detailed surficial and bedrock geology, structural and stratigraphic data, portrayal of the active Denali fault that bisects the core of the east–west-trending range, and portrayal of other young faults along the north and south flanks of the range.

Modelling of high-frequency structure-borne sound transmission on FEM grids using the Discrete Flow Mapping technique

NASA Astrophysics Data System (ADS)

Hartmann, Timo; Tanner, Gregor; Xie, Gang; Chappell, David; Bajars, Janis

2016-09-01

Dynamical Energy Analysis (DEA) combined with the Discrete Flow Mapping technique (DFM) has recently been introduced as a mesh-based high frequency method modelling structure borne sound for complex built-up structures. This has proven to enhance vibro-acoustic simulations considerably by making it possible to work directly on existing finite element meshes circumventing time-consuming and costly re-modelling strategies. In addition, DFM provides detailed spatial information about the vibrational energy distribution within a complex structure in the mid-to-high frequency range. We will present here progress in the development of the DEA method towards handling complex FEM-meshes including Rigid Body Elements. In addition, structure borne transmission paths due to spot welds are considered. We will present applications for a car floor structure.

Magnetic Doppler imaging of Ap stars

NASA Astrophysics Data System (ADS)

Silvester, J.; Wade, G. A.; Kochukhov, O.; Landstreet, J. D.; Bagnulo, S.

2008-04-01

Historically, the magnetic field geometries of the chemically peculiar Ap stars were modelled in the context of a simple dipole field. However, with the acquisition of increasingly sophisticated diagnostic data, it has become clear that the large-scale field topologies exhibit important departures from this simple model. Recently, new high-resolution circular and linear polarisation spectroscopy has even hinted at the presence of strong, small-scale field structures, which were completely unexpected based on earlier modelling. This project investigates the detailed structure of these strong fossil magnetic fields, in particular the large-scale field geometry, as well as small scale magnetic structures, by mapping the magnetic and chemical surface structure of a selected sample of Ap stars. These maps will be used to investigate the relationship between the local field vector and local surface chemistry, looking for the influence the field may have on the various chemical transport mechanisms (i.e., diffusion, convection and mass loss). This will lead to better constraints on the origin and evolution, as well as refining the magnetic field model for Ap stars. Mapping will be performed using high resolution and signal-to-noise ratio time-series of spectra in both circular and linear polarisation obtained using the new-generation ESPaDOnS (CFHT, Mauna Kea, Hawaii) and NARVAL spectropolarimeters (Pic du Midi Observatory). With these data we will perform tomographic inversion of Doppler-broadened Stokes IQUV Zeeman profiles of a large variety of spectral lines using the INVERS10 magnetic Doppler imaging code, simultaneously recovering the detailed surface maps of the vector magnetic field and chemical abundances.

Lightning Mapping With an Array of Fast Antennas

NASA Astrophysics Data System (ADS)

Wu, Ting; Wang, Daohong; Takagi, Nobuyuki

2018-04-01

Fast Antenna Lightning Mapping Array (FALMA), a low-frequency lightning mapping system comprising an array of fast antennas, was developed and established in Gifu, Japan, during the summer of 2017. Location results of two hybrid flashes and a cloud-to-ground flash comprising 11 return strokes (RSs) are described in detail in this paper. Results show that concurrent branches of stepped leaders can be readily resolved, and K changes and dart leaders with speeds up to 2.4 × 107 m/s are also well imaged. These results demonstrate that FALMA can reconstruct three-dimensional structures of lightning flashes with great details. Location accuracy of FALMA is estimated by comparing the located striking points of successive RSs in cloud-to-ground flashes. Results show that distances between successive RSs are mainly below 25 m, indicating exceptionally high location accuracy of FALMA.

Presentations - Herriott, T.M. and others, 2011 | Alaska Division of

Science.gov Websites

Details Title: Detailed geologic mapping and overview of structural and stratigraphic studies in the east Resident Business in Alaska Visiting Alaska State Employees DGGS State of Alaska search Alaska Division of in the east-central North Slope foothills, Alaska (poster): 3P Arctic, The Polar Petroleum Potential

Detailed geomorphological mapping from high resolution DEM data (LiDAR, TanDEM-X): two case studies from Germany and SE Tibet

NASA Astrophysics Data System (ADS)

Loibl, D.

2012-04-01

Two major obstacles are hampering the production of high resolution geomorphological maps: the complexity of the subject that should be depicted and the enormous efforts necessary to obtain data by field work. The first factor prevented the establishment of a generally accepted map legend; the second hampered efforts to collect comprehensive sets of geomorphological data. This left geomorphologists to produce applied maps, focusing on very few layers of information and often not sticking to any of the numerous standards proposed in the second half of the 20th century. Technological progress of the recent years, especially in the fields of digital elevation models, GIS environments, and computational hardware, today offers promising opportunities to overcome the obstacles and to produce detailed geomorphological maps even for remote or inhospitable regions. The feasibility of detailed geomorphological mapping from two new sets of digital elevation data, the 1 m LiDAR DTM provided by Germany's State Surveying Authority and the upcoming TanDEM-X DEM, has been evaluated in two case studies from a low mountain range in Germany and a high mountain range in SE Tibet. The results indicate that most layers of information of classical geomorphological maps (e.g. the German GMK) can be extracted from this data at appropriate scales but that significant differences occur concerning the quality and the grades of certainty of key contents. Generally, an enhancement of the geomorphographical, especially the geomorphometrical, and a weakening of geomorphogenetical contents was observed. From these findings, theoretical, methodological, and cartographical remarks on detailed geomorphological mapping from DEM data in GIS environments were educed. As GIS environments decouple data and design and enable the geomorphologist to choose information layer combinations freely to fit research topics, a general purpose legend becomes obsolete. Yet, a unified data structure is demanded to ensure that data collected by different scientists or in different studies can be exchanged and reused.

Evaluation of ERTS-1 data applications to geologic mapping, structural analysis and mineral resource inventory of South America with special emphasis on the Andes Mountain region. [Bolivia, Chile, and Peru

NASA Technical Reports Server (NTRS)

Carter, W. D. (Principal Investigator)

1974-01-01

The author has identified the following significant results. The La Paz Mosaic and its attendant overlays serve as a model for geologic studies elsewhere in the world. The P.I. and two geologists are mapping the conterminous states at scales of 1:5000,000 and 1:1,000,000. The 1:5 million band 5 mosaic was completed in two days of analysis. The 1:1 million band sheets are being completed at the rate of one per day. Comparison of the preliminary results of the three investigators shows a high correlation of linear and curvilinear features. Comparison with magnetic and gravity data indicates that many features being mapped are deep seated structures that have been active through long periods of geologic time, perhaps dating back to the Precambrian period. A detailed analysis of the El Salvador mining district has been completed. The interpretation is extremely detailed showing a complex pattern of linear features and bedrock outcrop patterns. This is the first product from ERTS-1 to be provided by Chile and shows a high degree of expertise in image interpretation. The Chileans are enthusiastic about their results and are anxious to map the entire country using ERTS.

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.

PubMed

Wang, Ray Yu-Ruei; Song, Yifan; Barad, Benjamin A; Cheng, Yifan; Fraser, James S; DiMaio, Frank

2016-09-26

Cryo-EM has revealed the structures of many challenging yet exciting macromolecular assemblies at near-atomic resolution (3-4.5Å), providing biological phenomena with molecular descriptions. However, at these resolutions, accurately positioning individual atoms remains challenging and error-prone. Manually refining thousands of amino acids - typical in a macromolecular assembly - is tedious and time-consuming. We present an automated method that can improve the atomic details in models that are manually built in near-atomic-resolution cryo-EM maps. Applying the method to three systems recently solved by cryo-EM, we are able to improve model geometry while maintaining the fit-to-density. Backbone placement errors are automatically detected and corrected, and the refinement shows a large radius of convergence. The results demonstrate that the method is amenable to structures with symmetry, of very large size, and containing RNA as well as covalently bound ligands. The method should streamline the cryo-EM structure determination process, providing accurate and unbiased atomic structure interpretation of such maps.

H I Structure and Topology of the Galaxy Revealed by the I-GALFA H I 21-cm Line Survey

NASA Astrophysics Data System (ADS)

Koo, Bon-Chul; Park, G.; Cho, W.; Gibson, S. J.; Kang, J.; Douglas, K. A.; Peek, J. E. G.; Korpela, E. J.; Heiles, C. E.

2011-05-01

The I-GALFA survey mapping all the H I in the inner Galactic disk visible to the Arecibo 305m telescope within 10 degrees of the Galactic plane (longitudes of 32 to 77 degrees at b = 0) completed observations in 2009 September and will soon be made publicly available. The high (3.4 arcmin) resolution and tremendous sensitivity of the survey offer a great opportunity to observe the fine details of H I both in the inner and in the far outer Galaxy. The reduced HI column density maps show that the HI structure is highly filamentary and clumpy, pervaded by shell-like structures, vertical filaments, and small clumps. By inspecting individual maps, we have found 36 shell candidates of angular sizes ranging from 0.4 to 12 degrees, half of which appear to be expanding. In order to characterize the filamentary/clumpy morphology of the HI structure, we have carried out statistical analyses of selected areas representing the spiral arms in the inner and outer Galaxy. Genus statistics that can distinguish the ``meatball'' and ``swiss-cheese'' topologies show that the HI topology is clump-like in most regions. The two-dimensional Fourier analysis further shows the HI structures are filamentary and mainly parallel to the plane in the outer Galaxy. We also examine the level-crossing statistics, the results of which are described in detail in an accompanying poster by Park et al.

Fuel loads and fuel type mapping

USGS Publications Warehouse

Chuvieco, Emilio; Riaño, David; Van Wagtendonk, Jan W.; Morsdof, Felix; Chuvieco, Emilio

2003-01-01

Correct description of fuel properties is critical to improve fire danger assessment and fire behaviour modeling, since they guide both fire ignition and fire propagation. This chapter deals with properties of fuel that can be considered static in short periods of time: biomass loads, plant geometry, compactness, etc. Mapping these properties require a detail knowledge of vegetation vertical and horizontal structure. Several systems to classify the great diversity of vegetation characteristics in few fuel types are described, as well as methods for mapping them with special emphasis on those based on remote sensing images.

Bacterial community structure analysis of sediment in the Sagami River, Japan using a rapid approach based on two-dimensional DNA gel electrophoresis mapping with selective primer pairs.

PubMed

Liu, Guo-hua; Rajendran, Narasimmalu; Amemiya, Takashi; Itoh, Kiminori

2011-11-01

A rapid approach based on two-dimensional DNA gel electrophroesis (2-DGE) mapping with selective primer pairs was employed to analyze bacterial community structure in sediments from upstream, midstream and downstream of Sagami River in Japan. The 2-DGE maps indicated that Alpha- and Delta-proteobacteria were major bacterial populations in the upstream and midstream sediments. Further bacterial community structure analysis showed that richness proportion of Alpha- and Delta-proteobacterial groups reflected a trend toward decreasing from the upstream to downstream sediments. The biomass proportion of bacterial populations in the midstream sediment showed a significantly difference from that in the other sediments, suggesting that there may be an environmental pressure on the midstream bacterial community. Lorenz curves, together with Gini coefficients were successfully applied to the 2-DGE mapping data for resolving evenness of bacterial populations, and showed that the plotted curve from high-resolution 2-DGE mapping became less linear and more an exponential function than that of the 1-DGE methods such as chain length analysis and denaturing gradient gel electrophoresis, suggesting that the 2-DGE mapping may achieve a more detailed evaluation of bacterial community. In conclusion, the 2-DGE mapping combined with the selective primer pairs enables bacterial community structure analysis in river sediment and thus it can also monitor sediment pollution based on the change of bacterial community structure.

Database for the geologic map of the Mount Baker 30- by 60-minute quadrangle, Washington (I-2660)

USGS Publications Warehouse

Tabor, R.W.; Haugerud, R.A.; Hildreth, Wes; Brown, E.H.

2006-01-01

This digital map database has been prepared by R.W. Tabor from the published Geologic map of the Mount Baker 30- by 60-Minute Quadrangle, Washington. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the geology at 1:100,000. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. This database depicts the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Database for the geologic map of the Chelan 30-minute by 60-minute quadrangle, Washington (I-1661)

USGS Publications Warehouse

Tabor, R.W.; Frizzell, V.A.; Whetten, J.T.; Waitt, R.B.; Swanson, D.A.; Byerly, G.R.; Booth, D.B.; Hetherington, M.J.; Zartman, R.E.

2006-01-01

This digital map database has been prepared by R. W. Tabor from the published Geologic map of the Chelan 30-Minute Quadrangle, Washington. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the bedrock geology at 1:100,000 scale, but compiled Quaternary units at 1:24,000 scale. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. This database depicts the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Database for the geologic map of the Snoqualmie Pass 30-minute by 60-minute quadrangle, Washington (I-2538)

USGS Publications Warehouse

Tabor, R.W.; Frizzell, V.A.; Booth, D.B.; Waitt, R.B.

2006-01-01

This digital map database has been prepared by R.W. Tabor from the published Geologic map of the Snoqualmie Pass 30' X 60' Quadrangle, Washington. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the bedrock geology at 1:100,000 scale, but compiled Quaternary units at 1:24,000 scale. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. This database depicts the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Geologic Map of the Wenatchee 1:100,000 Quadrangle, Central Washington: A Digital Database

USGS Publications Warehouse

Tabor, R.W.; Waitt, R.B.; Frizzell, V.A.; Swanson, D.A.; Byerly, G.R.; Bentley, R.D.

2005-01-01

This digital map database has been prepared by R.W. Tabor from the published Geologic map of the Wenatchee 1:100,000 Quadrangle, Central Washington. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the bedrock geology at 1:100,000 scale, but compiled Quaternary units at 1:24,000 scale. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. This database depicts the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Multilayered nonuniform sampling for three-dimensional scene representation

NASA Astrophysics Data System (ADS)

Lin, Huei-Yung; Xiao, Yu-Hua; Chen, Bo-Ren

2015-09-01

The representation of a three-dimensional (3-D) scene is essential in multiview imaging technologies. We present a unified geometry and texture representation based on global resampling of the scene. A layered data map representation with a distance-dependent nonuniform sampling strategy is proposed. It is capable of increasing the details of the 3-D structure locally and is compact in size. The 3-D point cloud obtained from the multilayered data map is used for view rendering. For any given viewpoint, image synthesis with different levels of detail is carried out using the quadtree-based nonuniformly sampled 3-D data points. Experimental results are presented using the 3-D models of reconstructed real objects.

Fine resolution mapping of population age-structures for health and development applications

PubMed Central

Alegana, V. A.; Atkinson, P. M.; Pezzulo, C.; Sorichetta, A.; Weiss, D.; Bird, T.; Erbach-Schoenberg, E.; Tatem, A. J.

2015-01-01

The age-group composition of populations varies considerably across the world, and obtaining accurate, spatially detailed estimates of numbers of children under 5 years is important in designing vaccination strategies, educational planning or maternal healthcare delivery. Traditionally, such estimates are derived from population censuses, but these can often be unreliable, outdated and of coarse resolution for resource-poor settings. Focusing on Nigeria, we use nationally representative household surveys and their cluster locations to predict the proportion of the under-five population in 1 × 1 km using a Bayesian hierarchical spatio-temporal model. Results showed that land cover, travel time to major settlements, night-time lights and vegetation index were good predictors and that accounting for fine-scale variation, rather than assuming a uniform proportion of under 5 year olds can result in significant differences in health metrics. The largest gaps in estimated bednet and vaccination coverage were in Kano, Katsina and Jigawa. Geolocated household surveys are a valuable resource for providing detailed, contemporary and regularly updated population age-structure data in the absence of recent census data. By combining these with covariate layers, age-structure maps of unprecedented detail can be produced to guide the targeting of interventions in resource-poor settings. PMID:25788540

Integrating geologic and satellite imagery data for high-resolution mapping and gold exploration targets in the South Eastern Desert, Egypt

NASA Astrophysics Data System (ADS)

Zoheir, Basem; Emam, Ashraf

2012-05-01

The granitoid-greenstone belts of the Arabian-Nubian Shield are well-endowed with lode gold and massive sulfide ores. Although generally characterized by excellent outcrops and arid desert realm, poor accessibility and lack of finance have been always retardant to detailed geologic mapping of vast areas of the shield. Lack of comprehensive geological information and maps at appropriate scales would definitely hinder serious exploration programs. In this study, band ratioing, principal component analysis (PCA), false-color composition (FCC), and frequency filtering (FFT-RWT) of ASTER and ETM+ data have substantially improved visual interpretation for detailed mapping of the Gebel Egat area in South Eastern Desert of Egypt. By compiling field, petrographic and spectral data, controls on gold mineralization have been assessed in terms of association of gold lodes with particular lithological units and structures. Contacts between foliated island arc metavolcanics and ophiolites or diorite are likely to be favorable loci for auriferous quartz veins, especially where the NW-SE foliation is deflected into steeply dipping NNW-trending shear planes. High-resolution mapping of the greenstone belt, structures and alteration zones associated with gold lodes in the study area suggests that dilatation by foliation deflection was related to emplacement of the Egat granitic intrusion, attendant with a sinistral transpression regime (i.e., ˜640-550 Ma?). Gold mineralization associated with granitoid intrusions in transpression-induced pull-apart structures elsewhere in the Eastern Desert (e.g., Fawakhir, Sukari and Hangaliya mines) emphasize the reliability of this setting as a model for gold exploration targets in greenstone terrains of Egypt, and may be elsewhere in the Arabian-Nubian Shield.

Bedrock geologic map of Vermont

USGS Publications Warehouse

Ratcliffe, Nicholas M.; Stanley, Rolfe S.; Gale, Marjorie H.; Thompson, Peter J.; Walsh, Gregory J.; With contributions by Hatch, Norman L.; Rankin, Douglas W.; Doolan, Barry L.; Kim, Jonathan; Mehrtens, Charlotte J.; Aleinikoff, John N.; McHone, J. Gregory; Cartography by Masonic, Linda M.

2011-01-01

The Bedrock Geologic Map of Vermont is the result of a cooperative agreement between the U.S. Geological Survey (USGS) and the State of Vermont. The State's complex geology spans 1.4 billion years of Earth's history. The new map comes 50 years after the most recent map of the State by Charles G. Doll and others in 1961 and a full 150 years since the publication of the first geologic map of Vermont by Edward Hitchcock and others in 1861. At a scale of 1:100,000, the map shows an uncommon level of detail for State geologic maps. Mapped rock units are primarily based on lithology, or rock type, to facilitate derivative studies in multiple disciplines. The 1961 map was compiled from 1:62,500-scale or smaller maps. The current map was created to integrate more detailed (1:12,000- to 1:24,000-scale) modern and older (1:62,500-scale) mapping with the theory of plate tectonics to provide a framework for geologic, tectonic, economic, hydrogeologic, and environmental characterization of the bedrock of Vermont. The printed map consists of three oversize sheets (52 x 76 inches). Sheets 1 and 2 show the southern and northern halves of Vermont, respectively, and can be trimmed and joined so that the entire State can be displayed as a single entity. These sheets also include 10 cross sections and a geologic structure map. Sheet 3 on the front consists of descriptions of 486 map units, a correlation of map units, and references cited. Sheet 3 on the back features a list of the 195 sources of geologic map data keyed to an index map of 7.5-minute quadrangles in Vermont, as well as a table identifying ages of rocks dated by uranium-lead zircon geochronology.

Photocopy of plan (in collection of U.S. Coast Guard Civil ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Photocopy of plan (in collection of U.S. Coast Guard Civil Engineering Unit Providence, Warwick, RI), U.S. Engineer Office, New York District, military reservation location of fortification structures, map no. 1, Fort Hanconck, New Jersey, July 29, 1944 Detail of western docking structure - U.S. Coast Guard Sandy Hook Station, Western Docking Structure, West of intersection of Canfield Road & Hartshorne Drive, Highlands, Monmouth County, NJ

Fact Book 1992: University of Alaska Fairbanks.

ERIC Educational Resources Information Center

Gaylord, Thomas; And Others

This publication presents information on the University of Alaska Fairbanks in seven sections. The first section, "Historical and General Information" details the legal establishment, mission, historical highlights, map, organizational structure, accreditation, Board of Regents, Standing Committees and advisory groups, songs, presidents…

High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape.

PubMed

Fossat, Martin J; Dao, Thuy P; Jenkins, Kelly; Dellarole, Mariano; Yang, Yinshan; McCallum, Scott A; Garcia, Angel E; Barrick, Doug; Roumestand, Christian; Royer, Catherine A

2016-12-06

A complete description of the pathways and mechanisms of protein folding requires a detailed structural and energetic characterization of the conformational ensemble along the entire folding reaction coordinate. Simulations can provide this level of insight for small proteins. In contrast, with the exception of hydrogen exchange, which does not monitor folding directly, experimental studies of protein folding have not yielded such structural and energetic detail. NMR can provide residue specific atomic level structural information, but its implementation in protein folding studies using chemical or temperature perturbation is problematic. Here we present a highly detailed structural and energetic map of the entire folding landscape of the leucine-rich repeat protein, pp32 (Anp32), obtained by combining pressure-dependent site-specific 1 H- 15 N HSQC data with coarse-grained molecular dynamics simulations. The results obtained using this equilibrium approach demonstrate that the main barrier to folding of pp32 is quite broad and lies near the unfolded state, with structure apparent only in the C-terminal region. Significant deviation from two-state unfolding under pressure reveals an intermediate on the folded side of the main barrier in which the N-terminal region is disordered. A nonlinear temperature dependence of the population of this intermediate suggests a large heat capacity change associated with its formation. The combination of pressure, which favors the population of folding intermediates relative to chemical denaturants; NMR, which allows their observation; and constrained structure-based simulations yield unparalleled insight into protein folding mechanisms. Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Identifying Interactions that Determine Fragment Binding at Protein Hotspots.

PubMed

Radoux, Chris J; Olsson, Tjelvar S G; Pitt, Will R; Groom, Colin R; Blundell, Tom L

2016-05-12

Locating a ligand-binding site is an important first step in structure-guided drug discovery, but current methods do little to suggest which interactions within a pocket are the most important for binding. Here we illustrate a method that samples atomic hotspots with simple molecular probes to produce fragment hotspot maps. These maps specifically highlight fragment-binding sites and their corresponding pharmacophores. For ligand-bound structures, they provide an intuitive visual guide within the binding site, directing medicinal chemists where to grow the molecule and alerting them to suboptimal interactions within the original hit. The fragment hotspot map calculation is validated using experimental binding positions of 21 fragments and subsequent lead molecules. The ligands are found in high scoring areas of the fragment hotspot maps, with fragment atoms having a median percentage rank of 97%. Protein kinase B and pantothenate synthetase are examined in detail. In each case, the fragment hotspot maps are able to rationalize a Free-Wilson analysis of SAR data from a fragment-based drug design project.

Offshore Energy Mapping for Northeast Atlantic and Mediterranean: MARINA PLATFORM project

NASA Astrophysics Data System (ADS)

Kallos, G.; Galanis, G.; Spyrou, C.; Kalogeri, C.; Adam, A.; Athanasiadis, P.

2012-04-01

Deep offshore ocean energy mapping requires detailed modeling of the wind, wave, tidal and ocean circulation estimations. It requires also detailed mapping of the associated extremes. An important issue in such work is the co-generation of energy (generation of wind, wave, tides, currents) in order to design platforms on an efficient way. For example wind and wave fields exhibit significant phase differences and therefore the produced energy from both sources together requires special analysis. The other two sources namely tides and currents have different temporal scales from the previous two. Another important issue is related to the estimation of the environmental frequencies in order to avoid structural problems. These are issues studied at the framework of the FP7 project MARINA PLATFORM. The main objective of the project is to develop deep water structures that can exploit the energy from wind, wave, tidal and ocean current energy sources. In particular, a primary goal will be the establishment of a set of equitable and transparent criteria for the evaluation of multi-purpose platforms for marine renewable energy. Using these criteria, a novel system set of design and optimisation tools will be produced addressing new platform design, component engineering, risk assessment, spatial planning, platform-related grid connection concepts, all focussed on system integration and reducing costs. The University of Athens group is in charge for estimation and mapping of wind, wave, tidal and ocean current resources, estimate available energy potential, map extreme event characteristics and provide any additional environmental parameter required.

Preliminary metallogenic belt and mineral deposit maps for northeast Asia

USGS Publications Warehouse

Obolenskiy, Alexander A.; Rodionov, Sergey M.; Dejidmaa, Gunchin; Gerel, Ochir; Hwang, Duk-Hwan; Distanov, Elimir G.; Badarch, Gombosuren; Khanchuk, Alexander I.; Ogasawara, Masatsugu; Nokleberg, Warren J.; Parfenov, Leonid M.; Prokopiev, Andrei V.; Seminskiy, Zhan V.; Smelov, Alexander P.; Yan, Hongquan; Birul'kin, Gennandiy V.; Davydov, Yuriy V.V.; Fridovskiy, Valeriy Yu.; Gamyanin, Gennandiy N.; Kostin, Alexei V.; Letunov, Sergey A.; Li, Xujun; Nikitin, Valeriy M.; Sotnikov, Sadahisa; Sudo, Vitaly I.; Spiridonov, Alexander V.; Stepanov, Vitaly A.; Sun, Fengyue; Sun, Jiapeng; Sun, Weizhi; Supletsov, Valeriy M.; Timofeev, Vladimir F.; Tyan, Oleg A.; Vetluzhskikh, Valeriy G.; Wakita, Koji; Yakovlev, Yakov V.; Zorina, Lydia M.

2003-01-01

The metallogenic belts and locations of major mineral deposits of Northeast Asia are portrayed on Sheets 1-4. Sheet 1 portrays the location of significant lode deposits and placer districts at a scale of 1:7,500,000. Sheets 2-4 portray the metallogenic belts of the region in a series of 12 time-slices from the Archean through the Quaternary at a scale of 1:15,000,000. For all four map sheets, a generalized geodynamics base map, derived from a more detailed map by Parfenov and others (2003), is used as an underlay for the metallogenic belt maps. This geodynamics map underlay permits depicts the major host geologic units and structures that host metallogenic belts. Four tables are included in this report. A hierarchial ranking of mineral deposit models is listed in Table 1. And summary features of lode deposits, placer districts, and metallogenic belts are described in Tables 2, 3, and 4, respectively. The metallogenic belts for Northeast Asia are synthesized, compiled, described, and interpreted with the use of modern concepts of plate tectonics, analysis of terranes and overlap assemblages, and synthesis of mineral deposit models. The data supporting the compilation are: (1) comprehensive descriptions of mineral deposits; (2) compilation and synthesis of a regional geodynamics map the region at 5 million scale with detailed explanations and cited references; and (3) compilation and synthesis of metallogenic belt maps at 15 million scale with detailed explanations and cited references. These studies are part of a major international collaborative study of the Mineral Resources, Metallogenesis, and Tectonics of Northeast Asia that is being conducted from 1997 through 2002 by geologists from earth science agencies and universities in Russia, Mongolia, Northeastern China, South Korea, Japan, and the USA. Companion studies and previous publications are: (1) a detailed geodynamics map of Northeast Asia (Parfenov and 2003); (2) a compilation of major mineral deposit models (Rodionov and Nokleberg, 2000; Rodionov and others, 2000; Obolenskiy and others, 2003); and (3) a database on significant metalliferous and selected nonmetalliferous lode deposits, and selected placer districts (Ariunbileg and others, 2003).

Speaker Invariance for Phonetic Information: an fMRI Investigation

PubMed Central

Salvata, Caden; Blumstein, Sheila E.; Myers, Emily B.

2012-01-01

The current study explored how listeners map the variable acoustic input onto a common sound structure representation while being able to retain phonetic detail to distinguish among the identity of talkers. An adaptation paradigm was utilized to examine areas which showed an equal neural response (equal release from adaptation) to phonetic change when spoken by the same speaker and when spoken by two different speakers, and insensitivity (failure to show release from adaptation) when the same phonetic input was spoken by a different speaker. Neural areas which showed speaker invariance were located in the anterior portion of the middle superior temporal gyrus bilaterally. These findings provide support for the view that speaker normalization processes allow for the translation of a variable speech input to a common abstract sound structure. That this process appears to occur early in the processing stream, recruiting temporal structures, suggests that this mapping takes place prelexically, before sound structure input is mapped on to lexical representations. PMID:23264714

Geologic map of the southern White Ledge Peak and Matilija quadrangles, Santa Barbara and Ventura Counties, California

USGS Publications Warehouse

Minor, Scott A.; Brandt, Theodore R.

2015-01-01

A principal aim of the new mapping and associated fault-kinematic measurements is to document and constrain the nature of transpressional strain transfer between various regional, potentially seismogenic faults. In the accompanying pamphlet, surficial and bedrock map units are described in detail as well as a summary of the structural and fault-kinematic framework of the map area. New biostratigraphic and biochronologic data based on microfossil identifications are presented in expanded unit descriptions of the marine Neogene Monterey and Sisquoc Formations. Site-specific fault kinematic observations are embedded in the digital map database. This compilation provides a uniform geologic digital geodatabase and map plot files that can be used for visualization, analysis, and interpretation of the area’s geology, geologic hazards, and natural resources.

Survey on Ontology Mapping

NASA Astrophysics Data System (ADS)

Zhu, Junwu

To create a sharable semantic space in which the terms from different domain ontology or knowledge system, Ontology mapping become a hot research point in Semantic Web Community. In this paper, motivated factors of ontology mapping research are given firstly, and then 5 dominating theories and methods, such as information accessing technology, machine learning, linguistics, structure graph and similarity, are illustrated according their technology class. Before we analyses the new requirements and takes a long view, the contributions of these theories and methods are summarized in details. At last, this paper suggest to design a group of semantic connector with the ability of migration learning for OWL-2 extended with constrains and the ontology mapping theory of axiom, so as to provide a new methodology for ontology mapping.

Alteration Map Showing Major Faults and Veins and Associated Water-Quality Signatures of the Animas River Watershed Headwaters Near Silverton, Southwest Colorado

USGS Publications Warehouse

Bove, Dana J.; Yager, Douglas B.; Mast, M. Alisa; Dalton, J. Brad

2007-01-01

This map was produced to provide hard-copy and digital data for alteration assemblages in the historical mining area centered on the Tertiary San Juan and Silverton calderas. The data have direct application to geoenvironmental and mineral exploration objectives. This dataset represents alteration mapping for the upper Animas River watershed near Silverton, Colorado. The map is based on detailed 1:12,000-scale field mapping, X-ray diffraction (XRD) analysis, mineral mapping by remote sensing (AVIRIS) data, and 1:24,000-scale aerial photographic interpretation. Geologic structures were compiled and generalized from multiple published and unpublished sources (Burbank and Luedke, 1964; Steven and others, 1974; Luedke and Burbank 1975a, b; Lipman, 1976; Luedke and Burbank, 1987; Luedke, 1996) (see Index Map). Unpublished mapping of the Ironton quadrangle by D.J. Bove and J.P. Kurtz in 1997-1999 was included.

Clickstream data yields high-resolution maps of science

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bollen, Johan; Van De Sompel, Herbert; Hagberg, Aric

2009-01-01

Intricate maps of science have been created from citation data to visualize the structure of scientific activity. However, most scientific publications are now accessed online. Scholarly web portals record detailed log data at a scale that exceeds the number of all existing citations combined. Such log data is recorded immediately upon publication and keeps track of the sequences of user requests (clickstreams) that are issued by a variety of users across many different domains. Given these advantagees of log datasets over citation data, we investigate whether they can produce high-resolution, more current maps of science.

Use of MAGSAT anomaly data for crustal structure and mineral resources in the US midcontinent

NASA Technical Reports Server (NTRS)

Carmichael, R. S. (Principal Investigator)

1981-01-01

While the preliminary magnetic anomaly map for the centra midcontinent is only in the hand-drawn stage, it agrees in broad aspects with the preliminary global MAGSAT map provided by NASA. Because of data evaluation and finer scale averaging, there are more detailed features which hold promise for eventual geological/crustal interpretation. Some current analysis is directed at examining whether a map data feature such as an elongated anomaly or trend, which seems parallel to satellite data tracks, is likely of crustal origin or is an artifact of the data set.

New Mapping in the Sand Springs Range of Western Nevada Clarifies and Constrains Regional Deformation Sequences of the Luning-Fencemaker Thrust Belt

NASA Astrophysics Data System (ADS)

Czarnecki, S.; Jarvis, J.; Satterfield, J. I.

2016-12-01

The Sand Springs Range in western Nevada exposes Mesozoic through Cenozoic structures of the eastern Sierra Nevada, Luning-Fencemaker Thrust Belt (LFTB), Basin and Range province, and Walker Lane. A recent undergraduate geologic mapping project in the northern Sand Springs Range (nSSR) set out to map igneous intrusions in detail, specifically smaller intrusions which had not been a focus in previous work. This was accomplished using different techniques including mapping at a smaller scale (1:8000 vs. 1:24000), locating contacts and faults using handheld GPS, and focusing on relationships between metamorphic tectonites and igneous units. This revealed key cross-cutting relations between structures and diverse Triassic through Tertiary igneous rocks as well as distinctions between the nSSR and the surrounding LFTB assemblages. During our mapping we identified four metamorphic tectonite map units, Cretaceous granitoid and diorite plutons and sills, Tertiary rhyolite sills and dikes, and interbedded Tertiary basalt and ash flow tuff. The cross-cutting relations of these units overturn previously published sequences of events and constrain the timing of a deformation sequence which differs from the surrounding LFTB assemblages. We found that the nSSR contains three phases of deformation: a pre-LFTB syn-metamorphic event which achieved amphibolite facies that is not described elsewhere in the LFTB (D1), followed by two non-metamorphic folding and thrusting phases characteristic of the LFTB (D2 and D3). Our mapping provided four key timing constraints. First, D1 axial-planar cleavage (S1) deformed Triassic intrusions. Second, Cretaceous granitoid and diorite units cross-cut S1 foliation, D1 folds, and low-angle faults. Third, Cretaceous and Tertiary sills that locally terminate at a low-angle fault actually post-dated faulting. Fourth, cross-cutting relations showed a basaltic lava previously mapped as Jurassic is actually Tertiary. The large Sand Springs Pluton was the only intrusion mapped in detail during previous studies; but our mapping has demonstrated the importance of both small and large intrusions in understanding the overall structural history of a complex area. This project was supported by research grants from Angelo State University and the Southwest Section AAPG.

Database for the geologic map of the Sauk River 30-minute by 60-minute quadrangle, Washington (I-2592)

USGS Publications Warehouse

Tabor, R.W.; Booth, D.B.; Vance, J.A.; Ford, A.B.

2006-01-01

This digital map database has been prepared by R.W. Tabor from the published Geologic map of the Sauk River 30- by 60 Minute Quadrangle, Washington. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the bedrock geology at 1:100,000 scale, but compiled most Quaternary units at 1:24,000 scale. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. This database depicts the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Geonucleus, the freeware application for managing geological mapping data in GIS

NASA Astrophysics Data System (ADS)

Albert, Gáspár

2016-04-01

Geological mapping is the most traditional way of collecting information from the deposits and rocks. The traditional technique of the documentation was refined by generations of geologists. These traditions were implemented into Geonucleus to create a tool for precise data-recording after fieldwork, but giving the freedom of pondering the details of the observation as well. In 2012 a general xml-based data structure was worked out for storing field observations for the Geological Institute of Hungary (Albert et al. 2012). This structure was implemented into the desktop version of Geonucleus, which creates a database of the recorded data on the client computer. The application saves the complete database in one file, which can be loaded into a GIS. The observations can be saved in simple text format as well, but primarily the kml (Keyhole Markup Languege) is supported. This way, the observations are visualized in comprehensible forms (e.g. on a 3D surface model with satellite photos in Google Earth). If the kml is directly visualized in Google Earth, an info-bubble will appear via clicking on a pinpoint. It displays all the metadata (e.g. index, coordinates, date, logger name, etc.), the descriptions and the photos of the observed site. If a more general GIS application is the aim (e.g. Global Mapper or QGIS), the file can be saved in a different format, but still in a kml-structure. The simple text format is recommended if the observations are to be imported in a user-defined relational database system (RDB). Report text-type is also available if a detailed description of one or more observed site is needed. Importing waypoint gpx-files can quicken the logging. The code was written in VisualBasic.Net. The app is freely accessible from the geonucleus.elte.hu site and it can be installed on any system, which has the .Net framework 4.0 or higher. The software is bilingual (English and Hungarian), and the app is designed for general geological mapping purposes (e.g. quick logging of field trips). The layout of the GUI has three components: 1) metadata area, 2) general description area with unlimited storing capacity, 3) switchable panels for observations, measurements, photos and notes. The latter includes panels for stratigraphy, structures, fossils, samples, photo uploads and general notes. Details like the sequence and contact type of layers, the parameters of structures and slickensides, name and condition of fossils and purpose of sampling are also available to log (but not compulsorily). It is also a tool for teaching geological mapping, since the available parameters - listed in the app - draws attention to the details, which are to be observed on the field. Reference: Albert G, Csillag G, Fodor L, Zentai L. 2012: Visualisation of Geological Observations on Web 2.0 Based Maps, in: Zentai, L. and Reyes-Nunez, J (eds.): Maps for the Future - Children, Education and Internet, Series: Lecture Notes in Geoinformation and Cartography, Tentative volume 5 - Springer, pp. 165-178.

Preliminary surficial geologic map of the Newberry Springs 30' x 60' quadrangle, California

USGS Publications Warehouse

Phelps, G.A.; Bedford, D.R.; Lidke, D.J.; Miller, D.M.; Schmidt, K.M.

2012-01-01

The Newberry Springs 30' x 60' quadrangle is located in the central Mojave Desert of southern California. It is split approximately into northern and southern halves by I-40, with the city of Barstow at its western edge and the town of Ludlow near its eastern edge. The map area spans lat 34°30 to 35° N. to long -116 °to -117° W. and covers over 1,000 km2. We integrate the results of surficial geologic mapping conducted during 2002-2005 with compilations of previous surficial mapping and bedrock geologic mapping. Quaternary units are subdivided in detail on the map to distinguish variations in age, process of formation, pedogenesis, lithology, and spatial interdependency, whereas pre-Quaternary bedrock units are grouped into generalized assemblages that emphasize their attributes as hillslope-forming materials and sources of parent material for the Quaternary units. The spatial information in this publication is presented in two forms: a spatial database and a geologic map. The geologic map is a view (the display of an extracted subset of the database at a given time) of the spatial database; it highlights key aspects of the database and necessarily does not show all of the data contained therein. The database contains detailed information about Quaternary geologic unit composition, authorship, and notes regarding geologic units, faults, contacts, and local vegetation. The amount of information contained in the database is too large to show on a single map, so a restricted subset of the information was chosen to summarize the overall nature of the geology. Refer to the database for additional information. Accompanying the spatial data are the map documentation and spatial metadata. The map documentation (this document) describes the geologic setting and history of the Newberry Springs map sheet, summarizes the age and physical character of each map unit, and describes principal faults and folds. The Federal Geographic Data Committee (FGDC) compliant metadata provides detailed information about the digital files and file structure of the spatial data.

Airborne gamma-ray spectrometer and magnetometer survey, Durango B, Colorado. Final report Volume II C. Detail area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1983-01-01

This volume contains eight appendices: flight line maps, geology maps, explanation of geologic legend, flight line/geology maps, radiometric contour maps, magnetic contour maps, multi-variant analysis maps, and geochemical factor analysis maps. These appendices pertain to the Durango B detail area.

A low-cost drone based application for identifying and mapping of coastal fish nursery grounds

NASA Astrophysics Data System (ADS)

Ventura, Daniele; Bruno, Michele; Jona Lasinio, Giovanna; Belluscio, Andrea; Ardizzone, Giandomenico

2016-03-01

Acquiring seabed, landform or other topographic data in the field of marine ecology has a pivotal role in defining and mapping key marine habitats. However, accessibility for this kind of data with a high level of detail for very shallow and inaccessible marine habitats has been often challenging, time consuming. Spatial and temporal coverage often has to be compromised to make more cost effective the monitoring routine. Nowadays, emerging technologies, can overcome many of these constraints. Here we describe a recent development in remote sensing based on a small unmanned drone (UAVs) that produce very fine scale maps of fish nursery areas. This technology is simple to use, inexpensive, and timely in producing aerial photographs of marine areas. Both technical details regarding aerial photos acquisition (drone and camera settings) and post processing workflow (3D model generation with Structure From Motion algorithm and photo-stitching) are given. Finally by applying modern algorithm of semi-automatic image analysis and classification (Maximum Likelihood, ECHO and Object-based Image Analysis) we compared the results of three thematic maps of nursery area for juvenile sparid fishes, highlighting the potential of this method in mapping and monitoring coastal marine habitats.

Modeling protein structure at near atomic resolutions with Gorgon.

PubMed

Baker, Matthew L; Abeysinghe, Sasakthi S; Schuh, Stephen; Coleman, Ross A; Abrams, Austin; Marsh, Michael P; Hryc, Corey F; Ruths, Troy; Chiu, Wah; Ju, Tao

2011-05-01

Electron cryo-microscopy (cryo-EM) has played an increasingly important role in elucidating the structure and function of macromolecular assemblies in near native solution conditions. Typically, however, only non-atomic resolution reconstructions have been obtained for these large complexes, necessitating computational tools for integrating and extracting structural details. With recent advances in cryo-EM, maps at near-atomic resolutions have been achieved for several macromolecular assemblies from which models have been manually constructed. In this work, we describe a new interactive modeling toolkit called Gorgon targeted at intermediate to near-atomic resolution density maps (10-3.5 Å), particularly from cryo-EM. Gorgon's de novo modeling procedure couples sequence-based secondary structure prediction with feature detection and geometric modeling techniques to generate initial protein backbone models. Beyond model building, Gorgon is an extensible interactive visualization platform with a variety of computational tools for annotating a wide variety of 3D volumes. Examples from cryo-EM maps of Rotavirus and Rice Dwarf Virus are used to demonstrate its applicability to modeling protein structure. Copyright © 2011 Elsevier Inc. All rights reserved.

A score-statistic approach for determining threshold values in QTL mapping.

PubMed

Kao, Chen-Hung; Ho, Hsiang-An

2012-06-01

Issues in determining the threshold values of QTL mapping are often investigated for the backcross and F2 populations with relatively simple genome structures so far. The investigations of these issues in the progeny populations after F2 (advanced populations) with relatively more complicated genomes are generally inadequate. As these advanced populations have been well implemented in QTL mapping, it is important to address these issues for them in more details. Due to an increasing number of meiosis cycle, the genomes of the advanced populations can be very different from the backcross and F2 genomes. Therefore, special devices that consider the specific genome structures present in the advanced populations are required to resolve these issues. By considering the differences in genome structure between populations, we formulate more general score test statistics and gaussian processes to evaluate their threshold values. In general, we found that, given a significance level and a genome size, threshold values for QTL detection are higher in the denser marker maps and in the more advanced populations. Simulations were performed to validate our approach.

Mapping forest canopy gaps using air-photo interpretation and ground surveys

USGS Publications Warehouse

Fox, T.J.; Knutson, M.G.; Hines, R.K.

2000-01-01

Canopy gaps are important structural components of forested habitats for many wildlife species. Recent improvements in the spatial accuracy of geographic information system tools facilitate accurate mapping of small canopy features such as gaps. We compared canopy-gap maps generated using ground survey methods with those derived from air-photo interpretation. We found that maps created from high-resolution air photos were more accurate than those created from ground surveys. Errors of omission were 25.6% for the ground-survey method and 4.7% for the air-photo method. One variable of inter est in songbird research is the distance from nests to gap edges. Distances from real and simulated nests to gap edges were longer using the ground-survey maps versus the air-photo maps, indicating that gap omission could potentially bias the assessment of spatial relationships. If research or management goals require location and size of canopy gaps and specific information about vegetation structure, we recommend a 2-fold approach. First, canopy gaps can be located and the perimeters defined using 1:15,000-scale or larger aerial photographs and the methods we describe. Mapped gaps can then be field-surveyed to obtain detailed vegetation data.

Application of ERTS-1 imagery to detecting and mapping modern erosion features and to monitoring erosional changes, in southern Arizona

NASA Technical Reports Server (NTRS)

Morrison, R. B. (Principal Investigator); Cooley, M. E.

1973-01-01

The author has identified the following significant results. The chief results during the reporting period were three 1:1,000,000 scale maps made from one ERTS-1 frame (1085-17330, 16 October 1972) showing: (1) the three most important types of materials in terms of the modern erosion problem: the readily erodible soils, gravel piedmonts and basin-fill areas, and consolidated rocks; (2) alluvial fans (dissected and relatively undissected); and (3) (as an additional bonus) linear structural features. Eight key areas (small parts of the whole study area) were selected for detailed study, and mapping was started in two of them, by interpretation of ultrahigh (U-2 and RB-57) airphotos, supplemented by field studies. In these areas detailed mapping was done not only on the modern erosion phenomena (arroyos, gullies, modern flood plains and terraces, and areas of sheet erosion and deposition), but also other features pertinent to the erosion problem, such as slope-local relief, landforms rock units, soil particle size and erodibility, and classes of vegetative cover.

Using Commercial Digital Cameras and Structure-for-Motion Software to Map Snow Cover Depth from Small Aircraft

NASA Astrophysics Data System (ADS)

Sturm, M.; Nolan, M.; Larsen, C. F.

2014-12-01

A long-standing goal in snow hydrology has been to map snow cover in detail, either mapping snow depth or snow water equivalent (SWE) with sub-meter resolution. Airborne LiDAR and air photogrammetry have been used successfully for this purpose, but both require significant investments in equipment and substantial processing effort. Here we detail a relatively inexpensive and simple airborne photogrammetric technique that can be used to measure snow depth. The main airborne hardware consists of a consumer-grade digital camera attached to a survey-quality, dual-frequency GPS. Photogrammetric processing is done using commercially available Structure from Motion (SfM) software that does not require ground control points. Digital elevation models (DEMs) are made from snow-free acquisitions in the summer and snow-covered acquisitions in winter, and the maps are then differenced to arrive at snow thickness. We tested the accuracy and precision of snow depths measured using this system through 1) a comparison with airborne scanning LiDAR, 2) a comparison of results from two independent and slightly different photogrameteric systems, and 3) comparison to extensive on-the-ground measured snow depths. Vertical accuracy and precision are on the order of +/-30 cm and +/- 8 cm, respectively. The accuracy can be made to approach that of the precision if suitable snow-free ground control points exists and are used to co-register summer to winter DEM maps. Final snow depth accuracy from our series of tests was on the order of ±15 cm. This photogrammetric method substantially lowers the economic and expertise barriers to entry for mapping snow.

Airborne gamma-ray spectrometer and magnetometer survey, Durango D, Colorado. Final report Volume II B. Detail area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1983-01-01

This volume comprises eight appendices containing the following information for the Durango D detail area: flight line maps, geology maps, explanation of geologic legend, flight line/geology maps, radiometric contour maps, magnetic contour maps, multi-variant analysis maps, and geochemical factor analysis maps.

Airborne gamma-ray spectrometer and magnetometer survey, Durango C, Colorado. Final report Volume II B. Detail area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1983-01-01

This volume comprises eight appendices containing the following information for the Durango C detail area: flight line maps, geology maps, explanation of geologic legend, flight line/geology maps, radiometric contour maps, magnetic contour maps, multi-variant analysis maps, and geochemical factor analysis maps.

Structural and stratigraphic framework and spatial distribution of permeability of the Atlantic coastal plain, North Carolina to New York

USGS Publications Warehouse

Brown, Philip Monroe; Miller, James A.; Swain, Frederick Morrill

1972-01-01

This report describes and interprets the results of a detailed subsurface mapping program undertaken in that part of the Atlantic Coastal Plain which extends from the South Carolina and North Carolina border through Long Island, N.Y. Data obtained from more than 2,200 wells are analyzed. Seventeen chronostratigraphic units are mapped in the subsurface. They range in age from Jurassic(?) to post-Miocene. The purpose of the mapping program was to determine the external and internal geometry of mappable chronostratigraphic units and to derive and construct a permeability-distribution network for each unit based upon contrasts in the textures and compositions of its contained sediments. The report contains a structure map and a combined isopach, lithofacies, and permeability-distribution map for each of the chronostratigraphic units delineated in the subsurface. In addition, it contains a map of the top of the basement surface. These maps, together with 36 stratigraphic cross sections, present a three-dimensional view of the regional subsurface hydrogeology. They provide focal points of reference for a discussion of regional tectonics, structure, stratigraphy, and permeability distribution. Taken together and in chronologic sequence, the maps constitute a detailed sedimentary model, the first such model to be constructed for the middle Atlantic Coastal Plain. The chronostratigraphic units mapped record a structural history dominated by lateral and vertical movement along a system of intersecting hinge zones. Taphrogeny, related to transcurrent faulting, is the dominant type of deformation that controlled the geometry of the sedimentary model. Twelve of the seventeen chronostratigraphic units mapped have depositional alinements and thickening trends that are independent of the present-day configuration of the underlying basement surface. These 12 units, classified as genetically unrooted units, are assigned to a first-order tectonic stage. A structural model is proposed whose alinements of positive and negative structural features are accordant with the depositional geometry of the chronostratigraphic units assigned to this tectonic stage. The dominant features of the structural model are northeast-plunging half grabens arranged en echelon and bordered by northeast-plunging fault-block anticlines. Tension-type hinge zones that strike north lie athwart the half grabens. Five of the seventeen chronostratigraphic units mapped have depositional alinements and thickening trends that are accordant with the present-day configuration of the underlying basement surface. These five units, classified as genetically rooted units, are assigned to a second-order tectonic stage. A structural model is proposed whose alinements of positive and negative features are accordant with the depositional geometry of the chronostratigraphic units assigned to this tectonic stage. The dominant feature of this model is a graben that stands tangential to southeast-plunging asymmetrical anticlines. Tension-type hinge zones that strike northeast lie athwart the graben. To account for the semiperiodic realinement of structural features that has characterized the history of the region and as a working hypothesis, we propose that the dominant tectonic element, which is present in the area between north Florida and Long Island, N.Y., is a unit-structural block, a ?basement? block, bounded by wrench-fault zones. We propose that forces derived principally from the rotation and precession of the earth act on the unit-structural block and deform it. Two tectonic models are proposed. One model is compatible with the structural and sedimentary geometries that are associated with chronostratigraphic units assigned to a first-order tectonic stage. It features tension-type hinge zones that strike north and shear-type hinge zones that strike northeast. The other model is compatible with the structural and sedimentary geometries associated with chronostratigraphi

Structure-Function Network Mapping and Its Assessment via Persistent Homology

PubMed Central

2017-01-01

Understanding the relationship between brain structure and function is a fundamental problem in network neuroscience. This work deals with the general method of structure-function mapping at the whole-brain level. We formulate the problem as a topological mapping of structure-function connectivity via matrix function, and find a stable solution by exploiting a regularization procedure to cope with large matrices. We introduce a novel measure of network similarity based on persistent homology for assessing the quality of the network mapping, which enables a detailed comparison of network topological changes across all possible thresholds, rather than just at a single, arbitrary threshold that may not be optimal. We demonstrate that our approach can uncover the direct and indirect structural paths for predicting functional connectivity, and our network similarity measure outperforms other currently available methods. We systematically validate our approach with (1) a comparison of regularized vs. non-regularized procedures, (2) a null model of the degree-preserving random rewired structural matrix, (3) different network types (binary vs. weighted matrices), and (4) different brain parcellation schemes (low vs. high resolutions). Finally, we evaluate the scalability of our method with relatively large matrices (2514x2514) of structural and functional connectivity obtained from 12 healthy human subjects measured non-invasively while at rest. Our results reveal a nonlinear structure-function relationship, suggesting that the resting-state functional connectivity depends on direct structural connections, as well as relatively parsimonious indirect connections via polysynaptic pathways. PMID:28046127

Broad, Undulated Rift Structure Hidden Under Thick Sediment in the Niigata region, Japan

NASA Astrophysics Data System (ADS)

Sekiguchi, S.; Enescu, B.; Takeda, T.; Asano, Y.; Obara, K.

2011-12-01

Niigata area is part of a broader region, located in the central and north-eastern part of Japan, known for its high strain rates (Sagiya et al., 2000). The reverse fault system in the Niigata area may indicate present reactivation of an ancient rift structure formed in the Miocene, at the opening of the Sea of Japan (Sato, 1994). To have a detailed understanding of seismotectonics in the Niigata area, we have installed a dense temporary network of 300 seismic stations. Enescu et al. (2011) presented preliminary tomography results, using earthquake data recorded during intense observations. The present study uses an improved dataset and refined data processing to reveal the detailed velocity structure and accurate earthquake locations. The data consists of 1805 events that have 151,780 P-picks and 169,696 S-picks, recorded at 434 temporary and permanent seismic stations. We first use a JHD algorithm (Kissling et al., 1994) to determine an optimum 1D velocity structure and more accurate hypocenters (both used later as input for the tomography inversion). As a result of relocation, the hypocenters in the on-shore Niigata basin region are shifted upwards by ~3 km, while the off-shore events become shallower by as much as 10 km, in agreement with results obtained in previous studies (e.g., Kato et al., 2009). We next use the "tomoDD" software (Zhang and Thurber, 2003) to invert for the 3D velocity structure and relocate simultaneously the hypocenters. The horizontal and vertical grid spacing were of 5 ~ 10 km and 2 ~ 4 km, respectively. The obtained velocity model shows a wide and relatively low velocity (< 5.5 km/s for the P-wave velocity and < 3 km/s for the S-wave velocity) band extending in a NE-SW direction, which widens and narrows along its extent. The thickness of the low-velocity region varies from place to place and exceeds 8 km in some parts. We have constructed iso-velocity maps to better visualize the shape and depth extent of the low-velocity region. Such maps clearly reveal the "meandered" basin structure and the fairly undulated surface of the basement rock below the low-velocity layer. The aftershocks of the 2004 and 2007 Niigata earthquakes occurred on the flanks of the lower velocity band. The high and low velocity pattern corresponds well to the Bouguer gravity anomalies mapped in the region. Moreover, the shallow velocity structure along a cross-section in the central part of the study area shows a good agreement with the structure mapped by a controlled-source seismology survey on a nearby profile. Kato et al. (2009), based on local tomography results, suggested the presence of a buried rift structure in the area of the 2004 and 2007 M6.8 Niigata earthquakes. Our study demonstrates that the hidden rift has a larger extent and a fairly undulated and segmented structure. The rift segmentation may have implications on the maximum size of earthquakes that could occur in the region and thus detailed mapping of the rift structure helps mitigating the seismic risk in this high-seismicity region.

A comparison of Gemini and ERTS imagery obtained over southern Morocco

NASA Technical Reports Server (NTRS)

Blodget, H. W.; Anderson, A. T.

1973-01-01

A mosaic constructed from three ERTS MSS band 5 images enlarged to 1:500,000 compares favorably with a similar scale geologic map of southern Morocco, and a near-similar scale Gemini 5 photo pair. A comparative plot of lineations and generalized geology on the three formats show that a significantly greater number of probable fractures are visible on the ERTS imagery than on the Gemini photography, and that both orbital formats show several times more lineaments than were previously mapped. A plot of mineral occurrences on the structural overlays indicates that definite structure-mineralization relationships exist; this finding is used to define underdeveloped areas which are prospective for mineralization. More detailed mapping is possible using MSS imagery than on Gemini 5 photographs, and in addition, the ERTS format is not restricted to limited coverage.

Precision grid survey apparatus and method for the mapping of hidden ferromagnetic structures

DOEpatents

von Wimmerspeg, Udo

2004-11-16

The present invention is for a precision grid surveyor having a stationary unit and a roving unit. The stationary unit has a light source unit that emits a light beam and a rotator to project the light beam toward detectors on a roving unit. The roving unit moves over an area to be surveyed. Further the invention is for a method of mapping details of hidden underground iron pipelines, and more particularly the location of bell joints.

Geologic and Fossil Locality Maps of the West-Central Part of the Howard Pass Quadrangle and Part of the Adjacent Misheguk Mountain Quadrangle, Western Brooks Range, Alaska

USGS Publications Warehouse

Dover, James H.; Tailleur, Irvin L.; Dumoulin, Julie A.

2004-01-01

The map depicts the field distribution and contact relations between stratigraphic units, the tectonic relations between major stratigraphic sequences, and the detailed internal structure of these sequences. The stratigraphic sequences formed in a variety of continental margin depositional environments, and subsequently underwent a complexde formational history of imbricate thrust faulting and folding. A compilation of micro and macro fossil identifications is included in this data set.

Strike-Slip Faulting Processes on Ganymede: Global Morphological Mapping and Structural Interpretation of Grooved and Transitional Terrains

NASA Astrophysics Data System (ADS)

Burkhard, L. M.; Cameron, M. E.; Smith-Konter, B. R.; Seifert, F.; Pappalardo, R. T.; Collins, G. C.

2015-12-01

Ganymede's fractured surface reveals many large-scale, morphologically distinct regions of inferred distributed shear and strike-slip faulting that may be important to the structural development of its surface and in the transition from dark to light (grooved) materials. To better understand the role of strike-slip tectonism in shaping Ganymede's complex icy surface, we perform a detailed mapping of key examples of strike-slip morphologies (i.e., en echelon structures, strike-slip duplexes, laterally offset pre-existing features, and possible strained craters) from Galileo and Voyager images. We focus on complex structures associated with grooved terrain (e.g. Nun Sulcus, Dardanus Sulcus, Tiamat Sulcus, and Arbela Sulcus) and terrains transitional from dark to light terrain (e.g. the boundary between Nippur Sulcus and Marius Regio, including Byblus Sulcus and Philus Sulcus). Detailed structural interpretations suggest strong evidence of strike-slip faulting in some regions (i.e., Nun and Dardanus Sulcus); however, further investigation of additional strike-slip structures is required of less convincing regions (i.e., Byblus Sulcus). Where applicable, these results are synthesized into a global database representing an inferred sense of shear for many of Ganymede's fractures. Moreover, when combined with existing observations of extensional features, these results help to narrow down the range of possible principal stress directions that could have acted at the regional or global scale to produce grooved terrain on Ganymede.

Predicting kinetics of polymorphic transformations from structure mapping and coordination analysis

NASA Astrophysics Data System (ADS)

Stevanović, Vladan; Trottier, Ryan; Musgrave, Charles; Therrien, Félix; Holder, Aaron; Graf, Peter

2018-03-01

To extend materials design and discovery into the space of metastable polymorphs, rapid and reliable assessment of transformation kinetics to lower energy structures is essential. Herein we focus on diffusionless polymorphic transformations and investigate routes to assess their kinetics using solely crystallographic arguments. As part of this investigation we developed a general algorithm to map crystal structures onto each other, and ascertain the low-energy (fast-kinetics) transformation pathways between them. Pathways with minimal dissociation of chemical bonds, along which the number of bonds (in ionic systems the first-shell coordination) does not decrease below that in the end structures, are shown to always be the fast-kinetics pathways. These findings enable the rapid assessment of the kinetics of polymorphic transformation and the identification of long-lived metastable structures. The utility is demonstrated on a number of transformations including those between high-pressure SnO2 phases, which lack a detailed atomic-level understanding.

Function-specific and Enhanced Brain Structural Connectivity Mapping via Joint Modeling of Diffusion and Functional MRI.

PubMed

Chu, Shu-Hsien; Parhi, Keshab K; Lenglet, Christophe

2018-03-16

A joint structural-functional brain network model is presented, which enables the discovery of function-specific brain circuits, and recovers structural connections that are under-estimated by diffusion MRI (dMRI). Incorporating information from functional MRI (fMRI) into diffusion MRI to estimate brain circuits is a challenging task. Usually, seed regions for tractography are selected from fMRI activation maps to extract the white matter pathways of interest. The proposed method jointly analyzes whole brain dMRI and fMRI data, allowing the estimation of complete function-specific structural networks instead of interactively investigating the connectivity of individual cortical/sub-cortical areas. Additionally, tractography techniques are prone to limitations, which can result in erroneous pathways. The proposed framework explicitly models the interactions between structural and functional connectivity measures thereby improving anatomical circuit estimation. Results on Human Connectome Project (HCP) data demonstrate the benefits of the approach by successfully identifying function-specific anatomical circuits, such as the language and resting-state networks. In contrast to correlation-based or independent component analysis (ICA) functional connectivity mapping, detailed anatomical connectivity patterns are revealed for each functional module. Results on a phantom (Fibercup) also indicate improvements in structural connectivity mapping by rejecting false-positive connections with insufficient support from fMRI, and enhancing under-estimated connectivity with strong functional correlation.

Importance of MAP Kinases during Protoperithecial Morphogenesis in Neurospora crassa

PubMed Central

Jeffree, Chris E.; Oborny, Radek; Boonyarungsrit, Patid; Read, Nick D.

2012-01-01

In order to produce multicellular structures filamentous fungi combine various morphogenetic programs that are fundamentally different from those used by plants and animals. The perithecium, the female sexual fruitbody of Neurospora crassa, differentiates from the vegetative mycelium in distinct morphological stages, and represents one of the more complex multicellular structures produced by fungi. In this study we defined the stages of protoperithecial morphogenesis in the N. crassa wild type in greater detail than has previously been described; compared protoperithecial morphogenesis in gene-deletion mutants of all nine mitogen-activated protein (MAP) kinases conserved in N. crassa; confirmed that all three MAP kinase cascades are required for sexual development; and showed that the three different cascades each have distinctly different functions during this process. However, only MAP kinases equivalent to the budding yeast pheromone response and cell wall integrity pathways, but not the osmoregulatory pathway, were essential for vegetative cell fusion. Evidence was obtained for MAP kinase signaling cascades performing roles in extracellular matrix deposition, hyphal adhesion, and envelopment during the construction of fertilizable protoperithecia. PMID:22900028

Cerebral cartography and connectomics

PubMed Central

Sporns, Olaf

2015-01-01

Cerebral cartography and connectomics pursue similar goals in attempting to create maps that can inform our understanding of the structural and functional organization of the cortex. Connectome maps explicitly aim at representing the brain as a complex network, a collection of nodes and their interconnecting edges. This article reflects on some of the challenges that currently arise in the intersection of cerebral cartography and connectomics. Principal challenges concern the temporal dynamics of functional brain connectivity, the definition of areal parcellations and their hierarchical organization into large-scale networks, the extension of whole-brain connectivity to cellular-scale networks, and the mapping of structure/function relations in empirical recordings and computational models. Successfully addressing these challenges will require extensions of methods and tools from network science to the mapping and analysis of human brain connectivity data. The emerging view that the brain is more than a collection of areas, but is fundamentally operating as a complex networked system, will continue to drive the creation of ever more detailed and multi-modal network maps as tools for on-going exploration and discovery in human connectomics. PMID:25823870

Integrating prior information into microwave tomography part 2: Impact of errors in prior information on microwave tomography image quality.

PubMed

Kurrant, Douglas; Fear, Elise; Baran, Anastasia; LoVetri, Joe

2017-12-01

The authors have developed a method to combine a patient-specific map of tissue structure and average dielectric properties with microwave tomography. The patient-specific map is acquired with radar-based techniques and serves as prior information for microwave tomography. The impact that the degree of structural detail included in this prior information has on image quality was reported in a previous investigation. The aim of the present study is to extend this previous work by identifying and quantifying the impact that errors in the prior information have on image quality, including the reconstruction of internal structures and lesions embedded in fibroglandular tissue. This study also extends the work of others reported in literature by emulating a clinical setting with a set of experiments that incorporate heterogeneity into both the breast interior and glandular region, as well as prior information related to both fat and glandular structures. Patient-specific structural information is acquired using radar-based methods that form a regional map of the breast. Errors are introduced to create a discrepancy in the geometry and electrical properties between the regional map and the model used to generate the data. This permits the impact that errors in the prior information have on image quality to be evaluated. Image quality is quantitatively assessed by measuring the ability of the algorithm to reconstruct both internal structures and lesions embedded in fibroglandular tissue. The study is conducted using both 2D and 3D numerical breast models constructed from MRI scans. The reconstruction results demonstrate robustness of the method relative to errors in the dielectric properties of the background regional map, and to misalignment errors. These errors do not significantly influence the reconstruction accuracy of the underlying structures, or the ability of the algorithm to reconstruct malignant tissue. Although misalignment errors do not significantly impact the quality of the reconstructed fat and glandular structures for the 3D scenarios, the dielectric properties are reconstructed less accurately within the glandular structure for these cases relative to the 2D cases. However, general agreement between the 2D and 3D results was found. A key contribution of this paper is the detailed analysis of the impact of prior information errors on the reconstruction accuracy and ability to detect tumors. The results support the utility of acquiring patient-specific information with radar-based techniques and incorporating this information into MWT. The method is robust to errors in the dielectric properties of the background regional map, and to misalignment errors. Completion of this analysis is an important step toward developing the method into a practical diagnostic tool. © 2017 American Association of Physicists in Medicine.

Preliminary Geologic Map of the Mount Hood 30- by 60-minute Quadrangle, Northern Cascade Range, Oregon

USGS Publications Warehouse

Sherrod, David R.; Scott, William E.

1995-01-01

This map shows the geology of the central and eastern parts of the Cascade Range in northern Oregon. The Quaternary andesitic stratovolcano of Mount Hood dominates the northwest quarter of the quadrangle, but nearly the entire area is underlain by arc-related volcanic and volcaniclastic rocks of the Cascade Range. Most stratigraphic units were emplaced since middle Miocene time, and all are Oligocene or younger. Despite the proximity of the map area to the Portland metropolitan area, large parts remained virtually unstudied or known only from limited reconnaissance until the late 1970s. A notable exception is the area surrounding Mount Hood, where mapping and chemical analyses by Wise (1969) provided a framework for geologic interpretation. Mapping since 1975 was conducted first to understand the stratigraphy and structure of the Columbia River Basalt Group (Anderson, 1978; Vogt, 1981; J.L. Anderson, in Swanson and others, 1981; Vandiver-Powell, 1978; Burck, 1986) and later to examine the geothermal potential of Mount Hood (Priest and others, 1982). Additional mapping was completed in 1985 for a geologic map of the Cascade Range in Oregon (Sherrod and Smith, 1989). From 1987 to 1990, detailed mapping was conducted in three 15-minute quadrangles on a limited basis (D.R. Sherrod, unpublished mapping) (see fig. 1 for index to mapping). An ongoing volcanic hazards study of Mount Hood by the U.S. Geological Survey (Scott and others, 1994) has provided the catalyst for completing the geologic map of the Mount Hood 30-minute by 60-minute quadrangle. As of June 1994, only two broad areas still remain largely unmapped. One of these areas, labeled 'unmapped' on the geologic map, lies in the Salmon River valley south of Zigzag along the west margin of the quadrangle. Although strata of the Columbia River Basalt Group in the Salmon River valley were mapped in detail by Burck (1986), the overlying middle and upper(?) Miocene lava flows, volcaniclastic strata, and intrusions have never been studied. The other poorly known area, the Mutton Mountains in the southeastern part of the map area, consists of Oligocene and lower Miocene volcanic and volcaniclastic rocks. Overlying lava flows of the Columbia River Basalt Group were mapped in some detail by Anderson (in Swanson and others, 1981).

Atomic Resolution Cryo-EM Structure of β-Galactosidase.

PubMed

Bartesaghi, Alberto; Aguerrebere, Cecilia; Falconieri, Veronica; Banerjee, Soojay; Earl, Lesley A; Zhu, Xing; Grigorieff, Nikolaus; Milne, Jacqueline L S; Sapiro, Guillermo; Wu, Xiongwu; Subramaniam, Sriram

2018-05-10

The advent of direct electron detectors has enabled the routine use of single-particle cryo-electron microscopy (EM) approaches to determine structures of a variety of protein complexes at near-atomic resolution. Here, we report the development of methods to account for local variations in defocus and beam-induced drift, and the implementation of a data-driven dose compensation scheme that significantly improves the extraction of high-resolution information recorded during exposure of the specimen to the electron beam. These advances enable determination of a cryo-EM density map for β-galactosidase bound to the inhibitor phenylethyl β-D-thiogalactopyranoside where the ordered regions are resolved at a level of detail seen in X-ray maps at ∼ 1.5 Å resolution. Using this density map in conjunction with constrained molecular dynamics simulations provides a measure of the local flexibility of the non-covalently bound inhibitor and offers further opportunities for structure-guided inhibitor design. Published by Elsevier Ltd.

Mapping the band structure of a surface phononic crystal

NASA Astrophysics Data System (ADS)

Maznev, A. A.; Wright, O. B.; Matsuda, O.

2011-01-01

We map the band structure of surface acoustic modes of a periodic array of copper lines embedded in a SiO2 film on a silicon substrate by means of the laser-induced transient grating technique. A detailed map of the lowest sheet of the ω(k) surface and partial maps of two higher-order sheets are obtained. We discuss the topology of the ω(k) surface and explain how it arises from the Rayleigh and Sezawa modes of the film/substrate system. In the vicinity of the bandgap formed at the Brillouin zone boundary, the first and second dispersion sheets take the form of a saddle and a bowl, respectively, in agreement with a weak perturbation model. The shape of the third dispersion sheet, however, appears to defy expectations based on the perturbation approach. In particular, it contains minima located off the symmetry directions, which implies the existence of zero group velocity modes with an obliquely directed wavevector.

Column ratio mapping: a processing technique for atomic resolution high-angle annular dark-field (HAADF) images.

PubMed

Robb, Paul D; Craven, Alan J

2008-12-01

An image processing technique is presented for atomic resolution high-angle annular dark-field (HAADF) images that have been acquired using scanning transmission electron microscopy (STEM). This technique is termed column ratio mapping and involves the automated process of measuring atomic column intensity ratios in high-resolution HAADF images. This technique was developed to provide a fuller analysis of HAADF images than the usual method of drawing single intensity line profiles across a few areas of interest. For instance, column ratio mapping reveals the compositional distribution across the whole HAADF image and allows a statistical analysis and an estimation of errors. This has proven to be a very valuable technique as it can provide a more detailed assessment of the sharpness of interfacial structures from HAADF images. The technique of column ratio mapping is described in terms of a [110]-oriented zinc-blende structured AlAs/GaAs superlattice using the 1 angstroms-scale resolution capability of the aberration-corrected SuperSTEM 1 instrument.

Correlation between the Hurst exponent and the maximal Lyapunov exponent: Examining some low-dimensional conservative maps

NASA Astrophysics Data System (ADS)

Tarnopolski, Mariusz

2018-01-01

The Chirikov standard map and the 2D Froeschlé map are investigated. A few thousand values of the Hurst exponent (HE) and the maximal Lyapunov exponent (mLE) are plotted in a mixed space of the nonlinear parameter versus the initial condition. Both characteristic exponents reveal remarkably similar structures in this space. A tight correlation between the HEs and mLEs is found, with the Spearman rank ρ = 0 . 83 and ρ = 0 . 75 for the Chirikov and 2D Froeschlé maps, respectively. Based on this relation, a machine learning (ML) procedure, using the nearest neighbor algorithm, is performed to reproduce the HE distribution based on the mLE distribution alone. A few thousand HE and mLE values from the mixed spaces were used for training, and then using 2 - 2 . 4 × 105 mLEs, the HEs were retrieved. The ML procedure allowed to reproduce the structure of the mixed spaces in great detail.

Towards large-scale mapping of urban three-dimensional structure using Landsat imagery and global elevation datasets

NASA Astrophysics Data System (ADS)

Wang, P.; Huang, C.

2017-12-01

The three-dimensional (3D) structure of buildings and infrastructures is fundamental to understanding and modelling of the impacts and challenges of urbanization in terms of energy use, carbon emissions, and earthquake vulnerabilities. However, spatially detailed maps of urban 3D structure have been scarce, particularly in fast-changing developing countries. We present here a novel methodology to map the volume of buildings and infrastructures at 30 meter resolution using a synergy of Landsat imagery and openly available global digital surface models (DSMs), including the Shuttle Radar Topography Mission (SRTM), ASTER Global Digital Elevation Map (GDEM), ALOS World 3D - 30m (AW3D30), and the recently released global DSM from the TanDEM-X mission. Our method builds on the concept of object-based height profile to extract height metrics from the DSMs and use a machine learning algorithm to predict height and volume from the height metrics. We have tested this algorithm in the entire England and assessed our result using Lidar measurements in 25 England cities. Our initial assessments achieved a RMSE of 1.4 m (R2 = 0.72) for building height and a RMSE of 1208.7 m3 (R2 = 0.69) for building volume, demonstrating the potential of large-scale applications and fully automated mapping of urban structure.

Predicting climate change: Uncertainties and prospects for surmounting them

NASA Astrophysics Data System (ADS)

Ghil, Michael

2008-03-01

General circulation models (GCMs) are among the most detailed and sophisticated models of natural phenomena in existence. Still, the lack of robust and efficient subgrid-scale parametrizations for GCMs, along with the inherent sensitivity to initial data and the complex nonlinearities involved, present a major and persistent obstacle to narrowing the range of estimates for end-of-century warming. Estimating future changes in the distribution of climatic extrema is even more difficult. Brute-force tuning the large number of GCM parameters does not appear to help reduce the uncertainties. Andronov and Pontryagin (1937) proposed structural stability as a way to evaluate model robustness. Unfortunately, many real-world systems proved to be structurally unstable. We illustrate these concepts with a very simple model for the El Niño--Southern Oscillation (ENSO). Our model is governed by a differential delay equation with a single delay and periodic (seasonal) forcing. Like many of its more or less detailed and realistic precursors, this model exhibits a Devil's staircase. We study the model's structural stability, describe the mechanisms of the observed instabilities, and connect our findings to ENSO phenomenology. In the model's phase-parameter space, regions of smooth dependence on parameters alternate with rough, fractal ones. We then apply the tools of random dynamical systems and stochastic structural stability to the circle map and a torus map. The effect of noise with compact support on these maps is fairly intuitive: it is the most robust structures in phase-parameter space that survive the smoothing introduced by the noise. The nature of the stochastic forcing matters, thus suggesting that certain types of stochastic parametrizations might be better than others in achieving GCM robustness. This talk represents joint work with M. Chekroun, E. Simonnet and I. Zaliapin.

Mapping montane vegetation in Southern California from color infrared imagery

NASA Technical Reports Server (NTRS)

Minnich, R. A.; Bowden, L. W.; Pease, R. W.

1969-01-01

Mapping a large area in California like the San Bernardino Mountains, demonstrated that color infrared photography is suitable for detailed mapping and offers potential for quantitative mapping. The level of information presented is comparable or superior to the most detailed mapping by ground survey.

Global mapping of stratigraphy of an old-master painting using sparsity-based terahertz reflectometry.

PubMed

Dong, Junliang; Locquet, Alexandre; Melis, Marcello; Citrin, D S

2017-11-08

The process by which art paintings are produced typically involves the successive applications of preparatory and paint layers to a canvas or other support; however, there is an absence of nondestructive modalities to provide a global mapping of the stratigraphy, information that is crucial for evaluation of its authenticity and attribution, for insights into historical or artist-specific techniques, as well as for conservation. We demonstrate sparsity-based terahertz reflectometry can be applied to extract a detailed 3D mapping of the layer structure of the 17th century easel painting Madonna in Preghiera by the workshop of Giovanni Battista Salvi da Sassoferrato, in which the structure of the canvas support, the ground, imprimatura, underpainting, pictorial, and varnish layers are identified quantitatively. In addition, a hitherto unidentified restoration of the varnish has been found. Our approach unlocks the full promise of terahertz reflectometry to provide a global and detailed account of an easel painting's stratigraphy by exploiting the sparse deconvolution, without which terahertz reflectometry in the past has only provided a meager tool for the characterization of paintings with paint-layer thicknesses smaller than 50 μm. The proposed modality can also be employed across a broad range of applications in nondestructive testing and biomedical imaging.

Infrared Extinction and the Initial Conditions For Star and Planet Formation

NASA Technical Reports Server (NTRS)

Lada, Charles J.

2003-01-01

This grant funds a research program to use infrared extinction measurements to probe the detailed structure of dark molecular clouds and investigate the physical conditions which give rise to star and planet formation. The goals of the this program are to: 1) acquire deep infrared and molecular-line observations of a carefully selected sample of nearby dark clouds, 2) reduce and analyze the data obtained in order to produce detailed extinction maps of the clouds, 3) prepare results, where appropriate, for publication.

Infrared Extinction and the Initial Conditions for Star and Planet Formation

NASA Technical Reports Server (NTRS)

Lada, Charles J.

2002-01-01

This grant funds a research program to use infrared extinction measurements to probe the detailed structure of dark molecular clouds and investigate the physical conditions which give rise to star and planet formation. The goals of the this program are to: (1) acquire deep infrared and molecular-line observations of a carefully selected sample of nearby dark clouds; (2) reduce and analyze the data obtained in order to produce detailed extinction maps of the clouds; and (3) prepare results, where appropriate, for publication.

Saturation scanning of ubiquitin variants reveals a common hot spot for binding to USP2 and USP21.

PubMed

Leung, Isabel; Dekel, Ayelet; Shifman, Julia M; Sidhu, Sachdev S

2016-08-02

A detailed understanding of the molecular mechanisms whereby ubiquitin (Ub) recognizes enzymes in the Ub proteasome system is crucial for understanding the biological function of Ub. Many structures of Ub complexes have been solved and, in most cases, reveal a large structural epitope on a common face of the Ub molecule. However, owing to the generally weak nature of these interactions, it has been difficult to map in detail the functional contributions of individual Ub side chains to affinity and specificity. Here we took advantage of Ub variants (Ubvs) that bind tightly to particular Ub-specific proteases (USPs) and used phage display and saturation scanning mutagenesis to comprehensively map functional epitopes within the structural epitopes. We found that Ubvs that bind to USP2 or USP21 contain a remarkably similar core functional epitope, or "hot spot," consisting mainly of positions that are conserved as the wild type sequence, but also some positions that prefer mutant sequences. The Ubv core functional epitope contacts residues that are conserved in the human USP family, and thus it is likely important for the interactions of Ub across many family members.

Structure of possible long-lived asteroid belts

NASA Astrophysics Data System (ADS)

Evans, N. W.; Tabachnik, S. A.

2002-06-01

High-resolution simulations are used to map out the detailed structure of two long-lived stable belts of asteroid orbits in the inner Solar system. The Vulcanoid belt extends from 0.09 to 0.20au, though with a gaps at 0.15 and 0.18au corresponding to de-stabilizing mean motion resonances with Mercury and Venus. As collisional evolution proceeds slower at larger heliocentric distances, km-sized or larger Vulcanoids are most likely to be found in the region between 0.16 and 0.18au. The optimum location to search is at geocentric ecliptic longitudes 9°<=|lg|<=10° and latitudes |βg|<1°. Dynamically speaking, the Earth-Mars belt between 1.08 and 1.28au is a stable repository for asteroids on nearly circular orbits. It is interrupted at 1.21au owing to the 3:4 commensurability with the Earth, while secular resonances with Saturn are troublesome beyond 1.17au. These detailed maps of the fine structure of the belts can be used to plan search methodologies. Strategies for detecting members of the belts are discussed, including the use of infrared wide-field imaging with VISTA, and forthcoming European Space Agency satellite missions such as GAIA and BepiColombo.

Forced Folds and Craters of Elevation in the Afar

NASA Astrophysics Data System (ADS)

Hetherington, Rachel; Mussetti, Giulio; Hagos, Miruts; Deering, Chad; Corti, Giacomo; Magee, Craig; Ian, Bastow; van Wyk de Vries, Benjamin; Marques, Alvaro

2015-04-01

Uplifts caused by magma intrusion have been observed and mapped since the pioneering work of von Buch two hundred years ago. Von Buch's "Craters of elevation theory", developed in the Auvergne and Canaries, was, unfortunately, discredited and mostly forgotten until recent work has shown that the forced folds mapped in seismic sections in sedimentary basins are the same type of feature. Also, these magmatic bulges are being found on an increasing number of volcanoes. The Danakil region of Ethiopia contains a superb range of forced folds with craters of elevation, which we have mapped using Google Earth and other satellite imagery, and some ground truthing. This preliminary work provides a geological map that is inspired from the 1970 Barberi and Vallet map, and which sets out in detail the structure and lava flow units of this area. We describe the main structures of each uplift, and suggest a preliminary general structural evolutionary pattern that provides a model for future research. This work has been untertaken by a group from multiple universities sharing interpretations and data in an open format. We aim to continue this work to study these superb geological features. Their superb nature and preservation is such that we would also press for them to be made a geoheritage reserve of global importance: Either a Geopark or a World Heritage site.

Detailed petrophysical characterization enhances geological mapping of a buried substratum using aeromagnetic and gravity data; application to the southwestern Paris basin

NASA Astrophysics Data System (ADS)

Baptiste, Julien; Martelet, Guillaume; Faure, Michel; Beccaletto, Laurent; Chen, Yan; Reninger, Pierre-Alexandre

2016-04-01

Mapping the geometries (structure and lithology) of a buried basement is a key for targeting resources and for improving the regional geological knowledge. The Paris basin is a Mesozoic to Cenozoic intraplate basin set up on a Variscan substratum, which crops out in the surrounding massifs. We focus our study on the southwestern part of the Paris basin at its junction with the Aquitaine basin. This Mezo-Cenozoic cover separates the Armorican Massif and the Massif Central which compose of several litho-tectonic units bounded by crustal-scale shear zones. In spite of several lithological and structural correlations between various domains of the two massifs, their geological connection, hidden below the Paris basin sedimentary cover, is still largely debated. Potential field geophysics have proven effective for mapping buried basin/basement interfaces. In order to enhance the cartographic interpretation of these data, we have set up a detailed petrophysical library (field magnetic susceptibility data and density measurements on rock samples) of the Paleozoic rocks outcropping in the Variscan massifs. The combination of aeromagnetic and gravity data supported by the petrophysical signatures and field/borehole geological information, is carried out to propose a new map of the architecture of the Variscan substratum. The new synthetic map of geophysical signature of the Paris basin basement combines: i) the magnetic anomaly reduced to the pole, ii) the vertical gradient of the Bouguer anomaly and iii) the tilt derivative of the magnetic anomaly reduced to the pole. Based on this information, the Eastern extension of the major shear zones below the sedimentary cover is assessed. The petrophysical signatures were classified in three classes of magnetic susceptibility and density: low, intermediate and high. Basic rocks have high magnetization and density values whereas granite, migmatite and orthogneiss show low magnetization and density values, Proterozoic and Paleozoic sediments, micaschists and metagrauwackes have intermediate to low magnetization and density values. Detailed lithological attribution of geophysical anomalies was achieved separately for each geological sub-domain (in between 2 major structures). This methodology will be generalized at the scale of the entire Paris basin in order to propose a tectonic reconstruction of this segment of the Variscan belt, and provide guides for the exploration of hidden resources.

NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity.

PubMed

Al-Awami, Ali K; Beyer, Johanna; Strobelt, Hendrik; Kasthuri, Narayanan; Lichtman, Jeff W; Pfister, Hanspeter; Hadwiger, Markus

2014-12-01

We present NeuroLines, a novel visualization technique designed for scalable detailed analysis of neuronal connectivity at the nanoscale level. The topology of 3D brain tissue data is abstracted into a multi-scale, relative distance-preserving subway map visualization that allows domain scientists to conduct an interactive analysis of neurons and their connectivity. Nanoscale connectomics aims at reverse-engineering the wiring of the brain. Reconstructing and analyzing the detailed connectivity of neurons and neurites (axons, dendrites) will be crucial for understanding the brain and its development and diseases. However, the enormous scale and complexity of nanoscale neuronal connectivity pose big challenges to existing visualization techniques in terms of scalability. NeuroLines offers a scalable visualization framework that can interactively render thousands of neurites, and that supports the detailed analysis of neuronal structures and their connectivity. We describe and analyze the design of NeuroLines based on two real-world use-cases of our collaborators in developmental neuroscience, and investigate its scalability to large-scale neuronal connectivity data.

In-cell RNA structure probing with SHAPE-MaP.

PubMed

Smola, Matthew J; Weeks, Kevin M

2018-06-01

This protocol is an extension to: Nat. Protoc. 10, 1643-1669 (2015); doi:10.1038/nprot.2015.103; published online 01 October 2015RNAs play key roles in many cellular processes. The underlying structure of RNA is an important determinant of how transcripts function, are processed, and interact with RNA-binding proteins and ligands. RNA structure analysis by selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE) takes advantage of the reactivity of small electrophilic chemical probes that react with the 2'-hydroxyl group to assess RNA structure at nucleotide resolution. When coupled with mutational profiling (MaP), in which modified nucleotides are detected as internal miscodings during reverse transcription and then read out by massively parallel sequencing, SHAPE yields quantitative per-nucleotide measurements of RNA structure. Here, we provide an extension to our previous in vitro SHAPE-MaP protocol with detailed guidance for undertaking and analyzing SHAPE-MaP probing experiments in live cells. The MaP strategy works for both abundant-transcriptome experiments and for cellular RNAs of low to moderate abundance, which are not well examined by whole-transcriptome methods. In-cell SHAPE-MaP, performed in roughly 3 d, can be applied in cell types ranging from bacteria to cultured mammalian cells and is compatible with a variety of structure-probing reagents. We detail several strategies by which in-cell SHAPE-MaP can inform new biological hypotheses and emphasize downstream analyses that reveal sequence or structure motifs important for RNA interactions in cells.

UAV and SfM in Detailed Geomorphological Mapping of Granite Tors: An Example of Starościńskie Skały (Sudetes, SW Poland)

NASA Astrophysics Data System (ADS)

Kasprzak, Marek; Jancewicz, Kacper; Michniewicz, Aleksandra

2017-11-01

The paper presents an example of using photographs taken by unmanned aerial vehicles (UAV) and processed using the structure from motion (SfM) procedure in a geomorphological study of rock relief. Subject to analysis is a small rock city in the West Sudetes (SW Poland), known as Starościńskie Skały and developed in coarse granite bedrock. The aims of this paper were, first, to compare UAV/SfM-derived data with the cartographical image based on the traditional geomorphological field-mapping methods and the digital elevation model derived from airborne laser scanning (ALS). Second, to test if the proposed combination of UAV and SfM methods may be helpful in recognizing the detailed structure of granite tors. As a result of conducted UAV flights and digital image post-processing in AgiSoft software, it was possible to obtain datasets (dense point cloud, texture model, orthophotomap, bare-ground-type digital terrain model—DTM) which allowed to visualize in detail the surface of the study area. In consequence, it was possible to distinguish even the very small forms of rock surface microrelief: joints, aplite veins, rills and karren, weathering pits, etc., otherwise difficult to map and measure. The study includes also valorization of particular datasets concerning microtopography and allows to discuss indisputable advantages of using the UAV/SfM-based DTM in geomorphic studies of tors and rock cities, even those located within forest as in the presented case study.

The Crisis Map of the Czech Republic: the nationwide deployment of an Ushahidi application for disasters.

PubMed

Pánek, Jiří; Marek, Lukáš; Pászto, Vít; Valůch, Jaroslav

2017-10-01

Crisis mapping is a legitimate component of both crisis informatics and disaster risk management. It has become an effective tool for humanitarian workers, especially after the earthquake in Haiti in 2010. Ushahidi is among the many mapping platforms on offer in the growing field of crisis mapping, and involves the application of crowdsourcing to create online and interactive maps of areas in turmoil. This paper presents the Crisis Map of the Czech Republic, which is the first such instrument to be deployed nationwide in Central Europe. It describes the methodologies used in the preparatory work phase and details some practices identified during the creation and actual employment of the map. In addition, the paper assesses its structure and technological architecture, as well as its potential possible development in the future. Lastly, it evaluates the utilisation of the Crisis Map during the floods in the Czech Republic in 2013. © 2017 The Author(s). Disasters © Overseas Development Institute, 2017.

Geologic map of the Chewelah 30' x 60' Quadrangle, Washington and Idaho

USGS Publications Warehouse

Miller, F.K.

2001-01-01

This data set maps and describes the geology of the Chewelah 30' X 60' quadrangle, Washington and Idaho. Created using Environmental Systems Research Institute's ARC/INFO software, the data base consists of the following items: (1) a map coverage containing geologic contacts and units, (2) a point coverage containing site-specific geologic structural data, (3) two coverages derived from 1:100,000 Digital Line Graphs (DLG); one of which represents topographic data, and the other, cultural data, (4) two line coverages that contain cross-section lines and unit-label leaders, respectively, and (5) attribute tables for geologic units (polygons), contacts (arcs), and site-specific data (points). In addition, the data set includes the following graphic and text products: (1) A PostScript graphic plot-file containing the geologic map, topography, cultural data, and two cross sections, and on a separate sheet, a Correlation of Map Units (CMU) diagram, an abbreviated Description of Map Units (DMU), modal diagrams for granitic rocks, an index map, a regional geologic and structure map, and a key for point and line symbols; (2) PDF files of the Readme text-file and expanded Description of Map Units (DMU), and (3) this metadata file. The geologic map database contains original U.S. Geological Survey data generated by detailed field observation and by interpretation of aerial photographs. The map was compiled from geologic maps of eight 1:48,000 15' quadrangle blocks, each of which was made by mosaicing and reducing the four constituent 7.5' quadrangles. These 15' quadrangle blocks were mapped chiefly at 1:24,000 scale, but the detail of the mapping was governed by the intention that it was to be compiled at 1:48,000 scale. The compilation at 1:100,000 scale entailed necessary simplification in some areas and combining of some geologic units. Overall, however, despite a greater than two times reduction in scale, most geologic detail found on the 1:48,000 maps is retained on the 1:100,000 map. Geologic contacts across boundaries of the eight constituent quadrangles required minor adjustments, but none significant at the final 1:100,000 scale. The geologic map was compiled on a base-stable cronoflex copy of the Chewelah 30' X 60' topographic base and then scribed. The scribe guide was used to make a 0.007 mil-thick blackline clear-film, which was scanned at 1200 DPI by Optronics Specialty Company, Northridge, California. This image was converted to vector and polygon GIS layers and minimally attributed by Optronics Specialty Company. Minor hand-digitized additions were made at the USGS. Lines, points, and polygons were subsequently edited at the USGS by using standard ARC/INFO commands. Digitizing and editing artifacts significant enough to display at a scale of 1:100,000 were corrected. Within the database, geologic contacts are represented as lines (arcs), geologic units as polygons, and site-specific data as points. Polygon, arc, and point attribute tables (.pat, .aat, and .pat, respectively) uniquely identify each geologic datum.

Airborne gamma-ray spectrometer and magnetometer survey, Durango A, B, C, and D, Colorado. Volume I. Detail area. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1983-01-01

An airborne combined radiometric and magnetic survey was performed for the Department of Energy (DOE) over the Durango A, Durango B, Durango C, and Durango D Detail Areas of southwestern Colorado. The Durango A Detail Area is within the coverage of the Needle Mountains and Silverton 15' map sheets, and the Pole Creek Mountain, Rio Grande Pyramid, Emerald Lake, Granite Peak, Vallecito Reservoir, and Lemon Reservoir 7.5' map sheets of the National Topographic Map Series (NTMS). The Durango B Detail Area is within the coverage of the Silverton 15' map sheet and the Wetterhorn Peak, Uncompahgre Peak, Lake City, Redcloudmore » Peak, Lake San Cristobal, Pole Creek Mountain, and Finger Mesa 7.5' map sheets of the NTMS. The Durango C Detail Area is within the coverage of the Platoro and Wolf Creek Pass 15' map sheets of the NTMS. The Durango D Detail Area is within the coverage of the Granite Lake, Cimarrona Peak, Bear Mountain, and Oakbrush Ridge 7.5' map sheets of the NTMS. Radiometric data were corrected for live time, aircraft and equipment background, cosmic background, atmospheric radon, Compton scatter, and altitude dependence. The corrected data were statistically evaluated, gridded, and contoured to produce maps of the radiometric variables, uranium, potassium, and thorium; their ratios; and the residual magnetic field. These maps have been analyzed in order to produce a multi-variant analysis contour map based on the radiometric response of the individual geological units. A geochemical analysis has been performed, using the radiometric and magnetic contour maps, the multi-variant analysis map, and factor analysis techniques, to produce a geochemical analysis map for the area.« less

Mapping the Sedna-Lavinia Region of Venus

NASA Technical Reports Server (NTRS)

Campbell, Bruce A.; Anderson, Ross F.

2008-01-01

Geologic mapping of Venus at 1:5 M scale has shown in great detail the flow complexes of volcanoes, coronae, and shield fields, and the varying structural patterns that differentiate tesserae from corona rims and isolated patches of densely lineated terrain. In most cases, however, the lower-elevation plains between the higher-standing landforms are discriminated only on the basis of potentially secondary features such as late-stage lava flooding or tectonic overprinting. This result, in which volcanoes and tesserae appear as "islands in the sea," places weak constraints on the relative age of large upland regions and the nature of the basement terrain. In this work, we focus on the spatial distribution and topography of densely lineated and tessera units over a large region of Venus, and their relationship to apparently later corona and shield flow complexes. The goal is to identify likely connections between patches of deformed terrain that suggest earlier features of regional extent, and to compare the topography of linked patches with other such clusters as a guide to whether they form larger tracts beneath the plains. Mapping Approach. We are mapping the region from 57S to 57N, 300E-60E. Since the 1:5 M quadrangles emphasize detail of tessera structure and corona/edifice flows, we simply adopt the outlines of these features as they relate to the outcrops of either "densely lineated terrain" or tessera (Fig. 1). The densely lineated material is mapped in many quadrangles based on pervasive structural deformation, typically with a single major axis (in contrast to the overlapping orthogonal patterns on tesserae). This unit definition is often extended to include material of corona rims. We do not at present differentiate between plains units, since earlier efforts show that their most defining attributes may be secondary to the original emplacement (e.g., lobate or sheet-like flooding by thin flow units, tectonic patterns related to regional and localized stress regimes) [1].

Understanding earthquake hazards in urban areas - Evansville Area Earthquake Hazards Mapping Project

USGS Publications Warehouse

Boyd, Oliver S.

2012-01-01

The region surrounding Evansville, Indiana, has experienced minor damage from earthquakes several times in the past 200 years. Because of this history and the proximity of Evansville to the Wabash Valley and New Madrid seismic zones, there is concern among nearby communities about hazards from earthquakes. Earthquakes currently cannot be predicted, but scientists can estimate how strongly the ground is likely to shake as a result of an earthquake and are able to design structures to withstand this estimated ground shaking. Earthquake-hazard maps provide one way of conveying such information and can help the region of Evansville prepare for future earthquakes and reduce earthquake-caused loss of life and financial and structural loss. The Evansville Area Earthquake Hazards Mapping Project (EAEHMP) has produced three types of hazard maps for the Evansville area: (1) probabilistic seismic-hazard maps show the ground motion that is expected to be exceeded with a given probability within a given period of time; (2) scenario ground-shaking maps show the expected shaking from two specific scenario earthquakes; (3) liquefaction-potential maps show how likely the strong ground shaking from the scenario earthquakes is to produce liquefaction. These maps complement the U.S. Geological Survey's National Seismic Hazard Maps but are more detailed regionally and take into account surficial geology, soil thickness, and soil stiffness; these elements greatly affect ground shaking.

A dynamical system view of cerebellar function

NASA Astrophysics Data System (ADS)

Keeler, James D.

1990-06-01

First some previous theories of cerebellar function are reviewed, and deficiencies in how they map onto the neurophysiological structure are pointed out. I hypothesize that the cerebellar cortex builds an internal model, or prediction, of the dynamics of the animal. A class of algorithms for doing prediction based on local reconstruction of attractors are described, and it is shown how this class maps very well onto the structure of the cerebellar cortex. I hypothesize that the climbing fibers multiplex between different trajectories corresponding to different modes of operation. Then the vestibulo-ocular reflex is examined, and experiments to test the proposed model are suggested. The purpose of the presentation here is twofold: (1) To enlighten physiologists to the mathematics of a class of prediction algorithms that map well onto cerebellar architecture. (2) To enlighten dynamical system theorists to the physiological and anatomical details of the cerebellum.

Empty tracks optimization based on Z-Map model

NASA Astrophysics Data System (ADS)

Liu, Le; Yan, Guangrong; Wang, Zaijun; Zang, Genao

2017-12-01

For parts with many features, there are more empty tracks during machining. If these tracks are not optimized, the machining efficiency will be seriously affected. In this paper, the characteristics of the empty tracks are studied in detail. Combining with the existing optimization algorithm, a new tracks optimization method based on Z-Map model is proposed. In this method, the tool tracks are divided into the unit processing section, and then the Z-Map model simulation technique is used to analyze the order constraint between the unit segments. The empty stroke optimization problem is transformed into the TSP with sequential constraints, and then through the genetic algorithm solves the established TSP problem. This kind of optimization method can not only optimize the simple structural parts, but also optimize the complex structural parts, so as to effectively plan the empty tracks and greatly improve the processing efficiency.

Nasa's Planetary Geologic Mapping Program: Overview

NASA Astrophysics Data System (ADS)

Williams, D. A.

2016-06-01

NASA's Planetary Science Division supports the geologic mapping of planetary surfaces through a distinct organizational structure and a series of research and analysis (R&A) funding programs. Cartography and geologic mapping issues for NASA's planetary science programs are overseen by the Mapping and Planetary Spatial Infrastructure Team (MAPSIT), which is an assessment group for cartography similar to the Mars Exploration Program Assessment Group (MEPAG) for Mars exploration. MAPSIT's Steering Committee includes specialists in geological mapping, who make up the Geologic Mapping Subcommittee (GEMS). I am the GEMS Chair, and with a group of 3-4 community mappers we advise the U.S. Geological Survey Planetary Geologic Mapping Coordinator (Dr. James Skinner) and develop policy and procedures to aid the planetary geologic mapping community. GEMS meets twice a year, at the Annual Lunar and Planetary Science Conference in March, and at the Annual Planetary Mappers' Meeting in June (attendance is required by all NASA-funded geologic mappers). Funding programs under NASA's current R&A structure to propose geological mapping projects include Mars Data Analysis (Mars), Lunar Data Analysis (Moon), Discovery Data Analysis (Mercury, Vesta, Ceres), Cassini Data Analysis (Saturn moons), Solar System Workings (Venus or Jupiter moons), and the Planetary Data Archiving, Restoration, and Tools (PDART) program. Current NASA policy requires all funded geologic mapping projects to be done digitally using Geographic Information Systems (GIS) software. In this presentation we will discuss details on how geologic mapping is done consistent with current NASA policy and USGS guidelines.

RCrane: semi-automated RNA model building.

PubMed

Keating, Kevin S; Pyle, Anna Marie

2012-08-01

RNA crystals typically diffract to much lower resolutions than protein crystals. This low-resolution diffraction results in unclear density maps, which cause considerable difficulties during the model-building process. These difficulties are exacerbated by the lack of computational tools for RNA modeling. Here, RCrane, a tool for the partially automated building of RNA into electron-density maps of low or intermediate resolution, is presented. This tool works within Coot, a common program for macromolecular model building. RCrane helps crystallographers to place phosphates and bases into electron density and then automatically predicts and builds the detailed all-atom structure of the traced nucleotides. RCrane then allows the crystallographer to review the newly built structure and select alternative backbone conformations where desired. This tool can also be used to automatically correct the backbone structure of previously built nucleotides. These automated corrections can fix incorrect sugar puckers, steric clashes and other structural problems.

Excitation mechanism of surface plasmon polaritons in a double-layer wire grid structure

NASA Astrophysics Data System (ADS)

Motogaito, Atsushi; Nakajima, Tomoyasu; Miyake, Hideto; Hiramatsu, Kazumasa

2017-12-01

We characterize the optical properties of a double-layer wire grid structure and investigate in detail the excitation mechanism of surface plasmon polaritons (SPPs). Angular spectra for the transmittance of the transverse magnetic polarized light that are obtained through the experiment reveal two peaks. In addition, simulated mapping of the transmittance and the magnetic field distribution indicate that SPPs are excited in two areas of the wire grid structures: at the interface between the Au layer and the resist layer or the glass substrate and at the interface between the Au layer and air. The experimental data are consistent with the transmittance mapping result and the distribution of the magnetic field. Accordingly, we constructed a model of SPPs propagation. We consider that SPPs excited at the interface between the Au layer and the resist layer or the glass substrate strongly contribute to the extraordinary transmission observed in the wire grid structures.

Structural pattern of the Saïss basin and Tabular Middle Atlas in northern Morocco: Hydrological implications

NASA Astrophysics Data System (ADS)

Dauteuil, O.; Moreau, F.; Qarqori, K.

2016-07-01

The plain of Saïss is a fertile area of great agricultural production with major economic interests. Therefore, the improved knowledge about the water supply is imperative within a context of recurrent droughts and overexploitation of the groundwater. This plain is located in the Meknes-Fes basin and between two deformed domains: the Rif and Middle Atlas. The aquifers are fed by water coming from the Tabular Middle Atlas, for which the pathways are poorly constrained. This study provides new data to determine the water pathways based on a structural map produced from a novel analysis of SPOT images and a digital elevation model. This structural map reveals two fracture sets trending NE-SW and NW-SE. The first set is well known and corresponds to a main trend that controlled the tectonic and stratigraphic evolution of the study area. On the other hand, the NW-SE set was poorly described until now: it is both diffuse and widespread on the Tabular Middle Atlas. A comparison between the regional water flow trend, drainage pattern and structural map shows that the NW-SE fractures control the water flow from the Tabular Middle Atlas to the Saïss plain. A hydrological model is discussed where the water flow is confined onto Liassic carbonates and driven by NW-SE fractures. This study explains how a detailed structural mapping shows hydrology constraints.

Galactic Abundance Gradients fro IR Fine Strucuture LInes in Compact H II regions

NASA Technical Reports Server (NTRS)

Afflerbach, A.; Churchwell, E.; Werner, M. W.

1996-01-01

We present observations of the [S III]19(micro)m, [O III]52 and 88(micro)m, and [N III]57(micro)m lines toward 18 compact and ultracompact (UC) H II regions. These data were combined with data from the literature and high-resolution radio continuum maps to construct detailed statistical equilibrium and ionization equilibrium models of 34 compact H II regions located at galactocentric distances (Dg)0-12kpc. Our models simultaneously fit the observed IR fine-structure lines and high-resolution radio continuum maps.

A hemicyanine based ratiometric fluorescence probe for mapping lysosomal pH during heat stroke in living cells.

PubMed

Wu, Luling; Wang, Yang; James, Tony D; Jia, Nengqin; Huang, Chusen

2018-05-29

Heat stroke is a lethal condition which can cause dysfunction in the central nervous system, multi-organ damage and even death. However, there is still limited knowledge of the detailed mechanism about the roles of lysosomes in heat stroke due to lack of effective tools. Herein, we introduce our previously developed hemicyanine with a large D-π-A structure as the key fluorophore to develop a new fluorescent probe (CPY) for ratiometric mapping of lysosomal pH changes in live cells under a heat shock stimulus.

Ubiquitous Creation of Bas-Relief Surfaces with Depth-of-Field Effects Using Smartphones.

PubMed

Sohn, Bong-Soo

2017-03-11

This paper describes a new method to automatically generate digital bas-reliefs with depth-of-field effects from general scenes. Most previous methods for bas-relief generation take input in the form of 3D models. However, obtaining 3D models of real scenes or objects is often difficult, inaccurate, and time-consuming. From this motivation, we developed a method that takes as input a set of photographs that can be quickly and ubiquitously captured by ordinary smartphone cameras. A depth map is computed from the input photographs. The value range of the depth map is compressed and used as a base map representing the overall shape of the bas-relief. However, the resulting base map contains little information on details of the scene. Thus, we construct a detail map using pixel values of the input image to express the details. The base and detail maps are blended to generate a new depth map that reflects both overall depth and scene detail information. This map is selectively blurred to simulate the depth-of-field effects. The final depth map is converted to a bas-relief surface mesh. Experimental results show that our method generates a realistic bas-relief surface of general scenes with no expensive manual processing.

Ubiquitous Creation of Bas-Relief Surfaces with Depth-of-Field Effects Using Smartphones

PubMed Central

Sohn, Bong-Soo

2017-01-01

This paper describes a new method to automatically generate digital bas-reliefs with depth-of-field effects from general scenes. Most previous methods for bas-relief generation take input in the form of 3D models. However, obtaining 3D models of real scenes or objects is often difficult, inaccurate, and time-consuming. From this motivation, we developed a method that takes as input a set of photographs that can be quickly and ubiquitously captured by ordinary smartphone cameras. A depth map is computed from the input photographs. The value range of the depth map is compressed and used as a base map representing the overall shape of the bas-relief. However, the resulting base map contains little information on details of the scene. Thus, we construct a detail map using pixel values of the input image to express the details. The base and detail maps are blended to generate a new depth map that reflects both overall depth and scene detail information. This map is selectively blurred to simulate the depth-of-field effects. The final depth map is converted to a bas-relief surface mesh. Experimental results show that our method generates a realistic bas-relief surface of general scenes with no expensive manual processing. PMID:28287487

Pioneer Venus 1978

NASA Technical Reports Server (NTRS)

1976-01-01

An orbiter and a multiprobe spacecraft will be sent to Venus in 1978 to conduct a detailed examination of the planet's atmosphere and weather. The spin-stabilized multiprobe spacecraft consists of a bus, a large probe and three identical small probes, each carrying a complement of scientific instruments. The large probe will conduct a detailed sounding of the lower atmosphere, obtaining measurements of the clouds, atmospheric structure, wind speed, and atmospheric composition. Primary emphasis will be placed on the planet's energy balance and clouds. The three small probes will provide information on the circulation pattern of the lower atmosphere. The probe bus will provide data on the upper atmosphere and ionosphere down to an altitude of about 120 km. The orbiter is designed to globally map the atmosphere, ionosphere, and the solar wind/ionosphere interaction. In addition, it will utilize radar mapping techniques to study the surface.

Lamb Wave Tomography for Corrosion Mapping

NASA Technical Reports Server (NTRS)

Hinders, Mark K.; McKeon, James C. P.

1999-01-01

As the world-wide civil aviation fleet continues to age, methods for accurately predicting the presence of structural flaws-such as hidden corrosion-that compromise airworthiness become increasingly necessary. Ultrasonic guided waves, Lamb waves, allow large sections of aircraft structures to be rapidly inspected. However, extracting quantitative information from Lamb wave data has always involved highly trained personnel with a detailed knowledge of mechanical-waveguide physics. Our work focuses on using a variety of different tomographic reconstruction techniques to graphically represent the Lamb wave data in images that can be easily interpreted by technicians. Because the velocity of Lamb waves depends on thickness, we can convert the travel times of the fundamental Lamb modes into a thickness map of the inspection region. In this paper we show results for the identification of single or multiple back-surface corrosion areas in typical aluminum aircraft skin structures.

Geodatabase model for global geologic mapping: concept and implementation in planetary sciences

NASA Astrophysics Data System (ADS)

Nass, Andrea

2017-04-01

One aim of the NASA Dawn mission is to generate global geologic maps of the asteroid Vesta and the dwarf planet Ceres. To accomplish this, the Dawn Science Team followed the technical recommendations for cartographic basemap production. The geological mapping campaign of Vesta was completed and published, but mapping of the dwarf planet Ceres is still ongoing. The tiling schema for the geological mapping is the same for both planetary bodies and for Ceres it is divided into two parts: four overview quadrangles (Survey Orbit, 415 m/pixel) and 15 more detailed quadrangles (High Altitude Mapping HAMO, 140 m/pixel). The first global geologic map was based on survey images (415 m/pixel). The combine 4 Survey quadrangles completed by HAMO data served as basis for generating a more detailed view of the geologic history and also for defining the chronostratigraphy and time scale of the dwarf planet. The most detailed view can be expected within the 15 mapping quadrangles based on HAMO resolution and completed by the Low Altitude Mapping (LAMO) data with 35 m/pixel. For the interpretative mapping process of each quadrangle one responsible mapper was assigned. Unifying the geological mapping of each quadrangle and bringing this together to regional and global valid statements is already a very time intensive task. However, another challenge that has to be accomplished is to consider how the 15 individual mappers can generate one homogenous GIS-based project (w.r.t. geometrical and visual character) thus produce a geologically-consistent final map. Our approach this challenge was already discussed for mapping of Vesta. To accommodate the map requirements regarding rules for data storage and database management, the computer-based GIS environment used for the interpretative mapping process must be designed in a way that it can be adjusted to the unique features of the individual investigation areas. Within this contribution the template will be presented that uses standards for digitizing, visualization, data merging and synchronization in the processes of interpretative mapping project. Following the new technological innovations within GIS software and the individual requirements for mapping Ceres, a template was developed based on the symbology and framework. The template for (GIS-base) mapping presented here directly links the generically descriptive attributes of planetary objects to the predefined and standardized symbology in one data structure. Using this template the map results are more comparable and better controllable. Furthermore, merging and synchronization of the individual maps, map projects and sheets will be far more efficient. The template can be adapted to any other planetary body and or within future discovery missions (e.g., Lucy and Psyche which was selected to explore the early solar system by NASA) for generating reusable map results.

Initial progress in the recording of crime scene simulations using 3D laser structured light imagery techniques for law enforcement and forensic applications

NASA Astrophysics Data System (ADS)

Altschuler, Bruce R.; Monson, Keith L.

1998-03-01

Representation of crime scenes as virtual reality 3D computer displays promises to become a useful and important tool for law enforcement evaluation and analysis, forensic identification and pathological study and archival presentation during court proceedings. Use of these methods for assessment of evidentiary materials demands complete accuracy of reproduction of the original scene, both in data collection and in its eventual virtual reality representation. The recording of spatially accurate information as soon as possible after first arrival of law enforcement personnel is advantageous for unstable or hazardous crime scenes and reduces the possibility that either inadvertent measurement error or deliberate falsification may occur or be alleged concerning processing of a scene. Detailed measurements and multimedia archiving of critical surface topographical details in a calibrated, uniform, consistent and standardized quantitative 3D coordinate method are needed. These methods would afford professional personnel in initial contact with a crime scene the means for remote, non-contacting, immediate, thorough and unequivocal documentation of the contents of the scene. Measurements of the relative and absolute global positions of object sand victims, and their dispositions within the scene before their relocation and detailed examination, could be made. Resolution must be sufficient to map both small and large objects. Equipment must be able to map regions at varied resolution as collected from different perspectives. Progress is presented in devising methods for collecting and archiving 3D spatial numerical data from crime scenes, sufficient for law enforcement needs, by remote laser structured light and video imagery. Two types of simulation studies were done. One study evaluated the potential of 3D topographic mapping and 3D telepresence using a robotic platform for explosive ordnance disassembly. The second study involved using the laser mapping system on a fixed optical bench with simulated crime scene models of the people and furniture to assess feasibility, requirements and utility of such a system for crime scene documentation and analysis.

Contour mapping of relic structures in the Precambrian basement of the Reelfoot rift, North American midcontinent

USGS Publications Warehouse

Dart, R.L.; Swolfs, H.S.

1998-01-01

A new contour map of the basement of the Reelfoot rift constructed from drill hole and seismic reflection data shows the general surface configuration as well as several major and minor structural features. The major features are two asymmetric intrarift basins, bounded by three structural highs, and the rift margins. The basins are oriented normal to the northeast trend of the rift. Two of the highs appear to be ridges of undetermined width that extend across the rift. The third high is an isolated dome or platform located between the basins. The minor features are three linear structures of low relief oriented subparallel to the trend of the rift. Two of these, located within the rift basins, may divide the rift basins into paired subbasins. These mapped features may be the remnants of initial extensional rifting, half graben faulting, and basement subsidence. The rift basins are interpreted as having formed as opposing half graben, and the structural highs are interpreted as having formed as associated accommodation zones. Some of these features appear to be reactivated seismogenic structures within the modem midcontinent compressional stress regime. A detailed knowledge of the geometries of the Reelfoot rift's basement features, therefore, is essential when evaluating their seismic risk potential.

Monitoring and analysis of the change process in curriculum mapping compared to the National Competency-based Learning Objective Catalogue for Undergraduate Medical Education (NKLM) at four medical faculties. Part I: Conducive resources and structures

PubMed Central

Lammerding-Koeppel, Maria; Giesler, Marianne; Gornostayeva, Maryna; Narciss, Elisabeth; Wosnik, Annette; Zipfel, Stephan; Griewatz, Jan; Fritze, Olaf

2017-01-01

Objective: After passing of the National Competency-based Learning Objectives Catalogue in Medicine (Nationaler Kompetenzbasierter Lernzielkatalog Medizin, [NKLM, retrieved on 22.03.2016]), the German medical faculties must take inventory and develop their curricula. NKLM contents are expected to be present, but not linked well or sensibly enough in locally grown curricula. Learning and examination formats must be reviewed for appropriateness and coverage of the competences. The necessary curricular transparency is best achieved by systematic curriculum mapping, combined with effective change management. Mapping a complex existing curriculum and convincing a faculty that this will have benefits is not easy. Headed by Tübingen, the faculties of Freiburg, Heidelberg, Mannheim and Tübingen take inventory by mapping their curricula in comparison to the NKLM, using the dedicated web-based MERLIN-database. This two-part article analyses and summarises how NKLM curriculum mapping could be successful in spite of resistance at the faculties. The target is conveying the widest possible overview of beneficial framework conditions, strategies and results. Part I of the article shows the beneficial resources and structures required for implementation of curriculum mapping at the faculties. Part II describes key factors relevant for motivating faculties and teachers during the mapping process. Method: The network project was systematically planned in advance according to steps of project and change management, regularly reflected on and adjusted together in workshops and semi-annual project meetings. From the beginning of the project, a grounded-theory approach was used to systematically collect detailed information on structures, measures and developments at the faculties using various sources and methods, to continually analyse them and to draw a final conclusion (sources: surveys among the project participants with questionnaires, semi-structured group interviews and discussions, guideline-supported individual interviews, informal surveys, evaluation of target agreements and protocols, openly discernible local, regional or over-regional structure-relevant events). Results: The following resources and structures support implementation of curriculum mapping at a faculty: Setting up a coordination agency (≥50% of a full position; support by student assistants), systematic project management, and development of organisation and communication structures with integration of the dean of study and teaching and pilot departments, as well as development of a user-friendly web-based mapping instrument. Acceptance of the mapping was increased particularly by visualisation of the results and early insight into indicative results relevant for the department. Conclusion: Successful NKLM curriculum mapping requires trained staff for coordination, resilient communication structures and a user-oriented mapping database. In alignment with literature, recommendations can be derived to support other faculties that want to map their curriculum. PMID:28293674

Monitoring and analysis of the change process in curriculum mapping compared to the National Competency-based Learning Objective Catalogue for Undergraduate Medical Education (NKLM) at four medical faculties. Part I: Conducive resources and structures.

PubMed

Lammerding-Koeppel, Maria; Giesler, Marianne; Gornostayeva, Maryna; Narciss, Elisabeth; Wosnik, Annette; Zipfel, Stephan; Griewatz, Jan; Fritze, Olaf

2017-01-01

Objective: After passing of the National Competency-based Learning Objectives Catalogue in Medicine (Nationaler Kompetenzbasierter Lernzielkatalog Medizin, [NKLM, retrieved on 22.03.2016]), the German medical faculties must take inventory and develop their curricula. NKLM contents are expected to be present, but not linked well or sensibly enough in locally grown curricula. Learning and examination formats must be reviewed for appropriateness and coverage of the competences. The necessary curricular transparency is best achieved by systematic curriculum mapping, combined with effective change management. Mapping a complex existing curriculum and convincing a faculty that this will have benefits is not easy. Headed by Tübingen, the faculties of Freiburg, Heidelberg, Mannheim and Tübingen take inventory by mapping their curricula in comparison to the NKLM, using the dedicated web-based MER LIN -database. This two-part article analyses and summarises how NKLM curriculum mapping could be successful in spite of resistance at the faculties. The target is conveying the widest possible overview of beneficial framework conditions, strategies and results. Part I of the article shows the beneficial resources and structures required for implementation of curriculum mapping at the faculties. Part II describes key factors relevant for motivating faculties and teachers during the mapping process. Method: The network project was systematically planned in advance according to steps of project and change management, regularly reflected on and adjusted together in workshops and semi-annual project meetings. From the beginning of the project, a grounded-theory approach was used to systematically collect detailed information on structures, measures and developments at the faculties using various sources and methods, to continually analyse them and to draw a final conclusion (sources: surveys among the project participants with questionnaires, semi-structured group interviews and discussions, guideline-supported individual interviews, informal surveys, evaluation of target agreements and protocols, openly discernible local, regional or over-regional structure-relevant events). Results: The following resources and structures support implementation of curriculum mapping at a faculty: Setting up a coordination agency (≥50% of a full position; support by student assistants), systematic project management, and development of organisation and communication structures with integration of the dean of study and teaching and pilot departments, as well as development of a user-friendly web-based mapping instrument. Acceptance of the mapping was increased particularly by visualisation of the results and early insight into indicative results relevant for the department. Conclusion: Successful NKLM curriculum mapping requires trained staff for coordination, resilient communication structures and a user-oriented mapping database. In alignment with literature, recommendations can be derived to support other faculties that want to map their curriculum.

Geologic map of south-central Yucca Mountain, Nye County, Nevada

USGS Publications Warehouse

Dickerson, Robert P.; Drake II, Ronald M.

2004-01-01

New 1:6,000-scale geologic mapping in a 20-square-kilometer area near the south end of Yucca Mountain, Nevada, which is the proposed site of an underground repository for the storage of high-level radioactive wastes, substantially supplements the stratigraphic and structural data obtained from earlier, 1:24,000-scale mapping. Principal observations and interpretations resulting from the larger scale, more detailed nature of the recent investigation include: (1) the thickness of the Miocene Tiva Canyon Tuff decreases from north to south within the map area, and the lithophysal zones within the formation have a greater lateral variability than in areas farther north; and (2) fault relations are far more complex than shown on previous maps, with both major (block-bounding) and minor (intrablock) faults showing much lateral variation in (a) the number of splays and (b) the amount, distribution, and width of anastomosing breccia and fracture zones.

Preliminary Geologic Map of the Buxton 7.5' Quadrangle, Washington County, Oregon

USGS Publications Warehouse

Dinterman, Philip A.; Duvall, Alison R.

2009-01-01

This map, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits of the Buxton 7.5-minute quadrangle. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:24,000 or smaller. This plot file and accompanying database depict the distribution of geologic materials and structures at a regional (1:24,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains new information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Fine-Scale Map of Encyclopedia of DNA Elements Regions in the Korean Population

PubMed Central

Yoo, Yeon-Kyeong; Ke, Xiayi; Hong, Sungwoo; Jang, Hye-Yoon; Park, Kyunghee; Kim, Sook; Ahn, TaeJin; Lee, Yeun-Du; Song, Okryeol; Rho, Na-Young; Lee, Moon Sue; Lee, Yeon-Su; Kim, Jaeheup; Kim, Young J.; Yang, Jun-Mo; Song, Kyuyoung; Kimm, Kyuchan; Weir, Bruce; Cardon, Lon R.; Lee, Jong-Eun; Hwang, Jung-Joo

2006-01-01

The International HapMap Project aims to generate detailed human genome variation maps by densely genotyping single-nucleotide polymorphisms (SNPs) in CEPH, Chinese, Japanese, and Yoruba samples. This will undoubtedly become an important facility for genetic studies of diseases and complex traits in the four populations. To address how the genetic information contained in such variation maps is transferable to other populations, the Korean government, industries, and academics have launched the Korean HapMap project to genotype high-density Encyclopedia of DNA Elements (ENCODE) regions in 90 Korean individuals. Here we show that the LD pattern, block structure, haplotype diversity, and recombination rate are highly concordant between Korean and the two HapMap Asian samples, particularly Japanese. The availability of information from both Chinese and Japanese samples helps to predict more accurately the possible performance of HapMap markers in Korean disease-gene studies. Tagging SNPs selected from the two HapMap Asian maps, especially the Japanese map, were shown to be very effective for Korean samples. These results demonstrate that the HapMap variation maps are robust in related populations and will serve as an important resource for the studies of the Korean population in particular. PMID:16702437

Cerebral cartography and connectomics.

PubMed

Sporns, Olaf

2015-05-19

Cerebral cartography and connectomics pursue similar goals in attempting to create maps that can inform our understanding of the structural and functional organization of the cortex. Connectome maps explicitly aim at representing the brain as a complex network, a collection of nodes and their interconnecting edges. This article reflects on some of the challenges that currently arise in the intersection of cerebral cartography and connectomics. Principal challenges concern the temporal dynamics of functional brain connectivity, the definition of areal parcellations and their hierarchical organization into large-scale networks, the extension of whole-brain connectivity to cellular-scale networks, and the mapping of structure/function relations in empirical recordings and computational models. Successfully addressing these challenges will require extensions of methods and tools from network science to the mapping and analysis of human brain connectivity data. The emerging view that the brain is more than a collection of areas, but is fundamentally operating as a complex networked system, will continue to drive the creation of ever more detailed and multi-modal network maps as tools for on-going exploration and discovery in human connectomics. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Infrared Extinction and the Initial Conditions for Star and Planet Formation

NASA Technical Reports Server (NTRS)

Lada, Charles J.

2004-01-01

This grant funds a research program to use infrared extinction measurements to probe the detailed structure of dark molecular clouds and investigate the physical conditions which give rise to star and planet formation. The goals of the this program are to: 1) acquire deep infrared and molecular-line observations of a carefully selected sample of nearby dark clouds, 2) reduce and analyze the data obtained in order to produce detailed extinction maps of the clouds, 3) prepare results, where appropriate, for publication. A description of how these goals were met are included.

Fine and distributed subcellular retinotopy of excitatory inputs to the dendritic tree of a collision-detecting neuron

PubMed Central

Zhu, Ying

2016-01-01

Individual neurons in several sensory systems receive synaptic inputs organized according to subcellular topographic maps, yet the fine structure of this topographic organization and its relation to dendritic morphology have not been studied in detail. Subcellular topography is expected to play a role in dendritic integration, particularly when dendrites are extended and active. The lobula giant movement detector (LGMD) neuron in the locust visual system is known to receive topographic excitatory inputs on part of its dendritic tree. The LGMD responds preferentially to objects approaching on a collision course and is thought to implement several interesting dendritic computations. To study the fine retinotopic mapping of visual inputs onto the excitatory dendrites of the LGMD, we designed a custom microscope allowing visual stimulation at the native sampling resolution of the locust compound eye while simultaneously performing two-photon calcium imaging on excitatory dendrites. We show that the LGMD receives a distributed, fine retinotopic projection from the eye facets and that adjacent facets activate overlapping portions of the same dendritic branches. We also demonstrate that adjacent retinal inputs most likely make independent synapses on the excitatory dendrites of the LGMD. Finally, we show that the fine topographic mapping can be studied using dynamic visual stimuli. Our results reveal the detailed structure of the dendritic input originating from individual facets on the eye and their relation to that of adjacent facets. The mapping of visual space onto the LGMD's dendrites is expected to have implications for dendritic computation. PMID:27009157

Shadows and Dust: Mid-Infrared Extinction Mapping of the Initial Conditions of Massive Star and Star Cluster Formation

NASA Astrophysics Data System (ADS)

Tan, Jonathan

We describe a research plan to develop and extend the mid-infrared (MIR) extinction mapping technique presented by Butler & Tan (2009), who studied Infrared Dark Clouds (IRDCs) using Spitzer Space Telescope Infrared Array Camera (IRAC) 8 micron images. This method has the ability to probe the detailed spatial structure of very high column density regions, i.e. the gas clouds thought to represent the initial conditions for massive star and star cluster formation. We will analyze the data Spitzer obtained at other wavelengths, i.e. the IRAC bands at 3.6, 4.5 and 5.8 microns, and the Multiband Imaging Photometer (MIPS) bands, especially at 24 microns. This will allow us to measure the dust extinction law across the MIR and search for evidence of dust grain evolution, e.g. grain growth and ice mantle formation, as a function of gas density and column density. We will also study the detailed structure of the extinction features, including individual cores that may form single stars or close binaries, especially focusing on those cores that may form massive stars. By studying independent dark cores in a given IRDC, we will be able to test if they have a common minimum observed intensity, which we will then attribute to the foreground. This is a new method that should allow us to more accurately map distant, high column density IRDCs, probing more extreme regimes of star formation. We will combine MIR extinction mapping, which works best at high column densities, with near- IR mapping based on 2MASS images of star fields, which is most useful at lower columns that probe the extended giant molecular cloud structure. This information is crucial to help understand the formation process of IRDCs, which may be the rate limiting step for global galactic star formation rates. We will use our new extinction mapping methods to analyze large samples of IRDCs and thus search the Galaxy for the most extreme examples of high column density cores and assess the global star formation efficiency in dense gas. We will estimate the ability of future NASA missions, such as JWST, to carry out MIR extinction mapping science. We will develop the results of this research into an E/PO presentation to be included in the various public outreach events organized and courses taught by the PI.

Epistasis and Pleiotropy Affect the Modularity of the Genotype-Phenotype Map of Cross-Resistance in HIV-1.

PubMed

Polster, Robert; Petropoulos, Christos J; Bonhoeffer, Sebastian; Guillaume, Frédéric

2016-12-01

The genotype-phenotype (GP) map is a central concept in evolutionary biology as it describes the mapping of molecular genetic variation onto phenotypic trait variation. Our understanding of that mapping remains partial, especially when trying to link functional clustering of pleiotropic gene effects with patterns of phenotypic trait co-variation. Only on rare occasions have studies been able to fully explore that link and tend to show poor correspondence between modular structures within the GP map and among phenotypes. By dissecting the structure of the GP map of the replicative capacity of HIV-1 in 15 drug environments, we provide a detailed view of that mapping from mutational pleiotropic variation to phenotypic co-variation, including epistatic effects of a set of amino-acid substitutions in the reverse transcriptase and protease genes. We show that epistasis increases the pleiotropic degree of single mutations and provides modularity to the GP map of drug resistance in HIV-1. Moreover, modules of epistatic pleiotropic effects within the GP map match the phenotypic modules of correlated replicative capacity among drug classes. Epistasis thus increases the evolvability of cross-resistance in HIV by providing more drug- and class-specific pleiotropic profiles to the main effects of the mutations. We discuss the implications for the evolution of cross-resistance in HIV. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

High Resolution Stratigraphic Mapping in Complex Terrain: A Comparison of Traditional Remote Sensing Techniques with Unmanned Aerial Vehicle - Structure from Motion Photogrammetry

NASA Astrophysics Data System (ADS)

Nesbit, P. R.; Hugenholtz, C.; Durkin, P.; Hubbard, S. M.; Kucharczyk, M.; Barchyn, T.

2016-12-01

Remote sensing and digital mapping have started to revolutionize geologic mapping in recent years as a result of their realized potential to provide high resolution 3D models of outcrops to assist with interpretation, visualization, and obtaining accurate measurements of inaccessible areas. However, in stratigraphic mapping applications in complex terrain, it is difficult to acquire information with sufficient detail at a wide spatial coverage with conventional techniques. We demonstrate the potential of a UAV and Structure from Motion (SfM) photogrammetric approach for improving 3D stratigraphic mapping applications within a complex badland topography. Our case study is performed in Dinosaur Provincial Park (Alberta, Canada), mapping late Cretaceous fluvial meander belt deposits of the Dinosaur Park formation amidst a succession of steeply sloping hills and abundant drainages - creating a challenge for stratigraphic mapping. The UAV-SfM dataset (2 cm spatial resolution) is compared directly with a combined satellite and aerial LiDAR dataset (30 cm spatial resolution) to reveal advantages and limitations of each dataset before presenting a unique workflow that utilizes the dense point cloud from the UAV-SfM dataset for analysis. The UAV-SfM dense point cloud minimizes distortion, preserves 3D structure, and records an RGB attribute - adding potential value in future studies. The proposed UAV-SfM workflow allows for high spatial resolution remote sensing of stratigraphy in complex topographic environments. This extended capability can add value to field observations and has the potential to be integrated with subsurface petroleum models.

Differential Epitope Mapping by STD NMR Spectroscopy To Reveal the Nature of Protein-Ligand Contacts.

PubMed

Monaco, Serena; Tailford, Louise E; Juge, Nathalie; Angulo, Jesus

2017-11-27

Saturation transfer difference (STD) NMR spectroscopy is extensively used to obtain epitope maps of ligands binding to protein receptors, thereby revealing structural details of the interaction, which is key to direct lead optimization efforts in drug discovery. However, it does not give information about the nature of the amino acids surrounding the ligand in the binding pocket. Herein, we report the development of the novel method differential epitope mapping by STD NMR (DEEP-STD NMR) for identifying the type of protein residues contacting the ligand. The method produces differential epitope maps through 1) differential frequency STD NMR and/or 2) differential solvent (D 2 O/H 2 O) STD NMR experiments. The two approaches provide different complementary information on the binding pocket. We demonstrate that DEEP-STD NMR can be used to readily obtain pharmacophore information on the protein. Furthermore, if the 3D structure of the protein is known, this information also helps in orienting the ligand in the binding pocket. © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

The FTMap family of web servers for determining and characterizing ligand binding hot spots of proteins

PubMed Central

Kozakov, Dima; Grove, Laurie E.; Hall, David R.; Bohnuud, Tanggis; Mottarella, Scott; Luo, Lingqi; Xia, Bing; Beglov, Dmitri; Vajda, Sandor

2016-01-01

FTMap is a computational mapping server that identifies binding hot spots of macromolecules, i.e., regions of the surface with major contributions to the ligand binding free energy. To use FTMap, users submit a protein, DNA, or RNA structure in PDB format. FTMap samples billions of positions of small organic molecules used as probes and scores the probe poses using a detailed energy expression. Regions that bind clusters of multiple probe types identify the binding hot spots, in good agreement with experimental data. FTMap serves as basis for other servers, namely FTSite to predict ligand binding sites, FTFlex to account for side chain flexibility, FTMap/param to parameterize additional probes, and FTDyn to map ensembles of protein structures. Applications include determining druggability of proteins, identifying ligand moieties that are most important for binding, finding the most bound-like conformation in ensembles of unliganded protein structures, and providing input for fragment based drug design. FTMap is more accurate than classical mapping methods such as GRID and MCSS, and is much faster than the more recent approaches to protein mapping based on mixed molecular dynamics. Using 16 probe molecules, the FTMap server finds the hot spots of an average size protein in less than an hour. Since FTFlex performs mapping for all low energy conformers of side chains in the binding site, its completion time is proportionately longer. PMID:25855957

STRUCTURAL HETEROGENEITIES AND PALEO FLUID FLOW IN AN ANALOG SANDSTONE RESERVOIR 2001-2004

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pollard, David; Aydin, Atilla

2005-02-22

Fractures and faults are brittle structural heterogeneities that can act both as conduits and barriers with respect to fluid flow in rock. This range in the hydraulic effects of fractures and faults greatly complicates the challenges faced by geoscientists working on important problems: from groundwater aquifer and hydrocarbon reservoir management, to subsurface contaminant fate and transport, to underground nuclear waste isolation, to the subsurface sequestration of CO2 produced during fossil-fuel combustion. The research performed under DOE grant DE-FG03-94ER14462 aimed to address these challenges by laying a solid foundation, based on detailed geological mapping, laboratory experiments, and physical process modeling, onmore » which to build our interpretive and predictive capabilities regarding the structure, patterns, and fluid flow properties of fractures and faults in sandstone reservoirs. The material in this final technical report focuses on the period of the investigation from July 1, 2001 to October 31, 2004. The Aztec Sandstone at the Valley of Fire, Nevada, provides an unusually rich natural laboratory in which exposures of joints, shear deformation bands, compaction bands and faults at scales ranging from centimeters to kilometers can be studied in an analog for sandstone aquifers and reservoirs. The suite of structures there has been documented and studied in detail using a combination of low-altitude aerial photography, outcrop-scale mapping and advanced computational analysis. In addition, chemical alteration patterns indicative of multiple paleo fluid flow events have been mapped at outcrop, local and regional scales. The Valley of Fire region has experienced multiple episodes of fluid flow and this is readily evident in the vibrant patterns of chemical alteration from which the Valley of Fire derives its name. We have successfully integrated detailed field and petrographic observation and analysis, process-based mechanical modeling, and numerical simulation of fluid flow to study a typical sandstone aquifer/reservoir at a variety of scales. We have produced many tools and insights which can be applied to active subsurface flow systems and practical problems of pressing global importance.« less

Automated map sharpening by maximization of detail and connectivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terwilliger, Thomas C.; Sobolev, Oleg V.; Afonine, Pavel V.

An algorithm for automatic map sharpening is presented that is based on optimization of the detail and connectivity of the sharpened map. The detail in the map is reflected in the surface area of an iso-contour surface that contains a fixed fraction of the volume of the map, where a map with high level of detail has a high surface area. The connectivity of the sharpened map is reflected in the number of connected regions defined by the same iso-contour surfaces, where a map with high connectivity has a small number of connected regions. By combining these two measures inmore » a metric termed the `adjusted surface area', map quality can be evaluated in an automated fashion. This metric was used to choose optimal map-sharpening parameters without reference to a model or other interpretations of the map. Map sharpening by optimization of the adjusted surface area can be carried out for a map as a whole or it can be carried out locally, yielding a locally sharpened map. To evaluate the performance of various approaches, a simple metric based on map–model correlation that can reproduce visual choices of optimally sharpened maps was used. The map–model correlation is calculated using a model withBfactors (atomic displacement factors; ADPs) set to zero. Finally, this model-based metric was used to evaluate map sharpening and to evaluate map-sharpening approaches, and it was found that optimization of the adjusted surface area can be an effective tool for map sharpening.« less

Automated map sharpening by maximization of detail and connectivity

DOE PAGES

Terwilliger, Thomas C.; Sobolev, Oleg V.; Afonine, Pavel V.; ...

2018-05-18

An algorithm for automatic map sharpening is presented that is based on optimization of the detail and connectivity of the sharpened map. The detail in the map is reflected in the surface area of an iso-contour surface that contains a fixed fraction of the volume of the map, where a map with high level of detail has a high surface area. The connectivity of the sharpened map is reflected in the number of connected regions defined by the same iso-contour surfaces, where a map with high connectivity has a small number of connected regions. By combining these two measures inmore » a metric termed the `adjusted surface area', map quality can be evaluated in an automated fashion. This metric was used to choose optimal map-sharpening parameters without reference to a model or other interpretations of the map. Map sharpening by optimization of the adjusted surface area can be carried out for a map as a whole or it can be carried out locally, yielding a locally sharpened map. To evaluate the performance of various approaches, a simple metric based on map–model correlation that can reproduce visual choices of optimally sharpened maps was used. The map–model correlation is calculated using a model withBfactors (atomic displacement factors; ADPs) set to zero. Finally, this model-based metric was used to evaluate map sharpening and to evaluate map-sharpening approaches, and it was found that optimization of the adjusted surface area can be an effective tool for map sharpening.« less

Low Resolution Refinement of Atomic Models Against Crystallographic Data.

PubMed

Nicholls, Robert A; Kovalevskiy, Oleg; Murshudov, Garib N

2017-01-01

This review describes some of the problems encountered during low-resolution refinement and map calculation. Refinement is considered as an application of Bayes' theorem, allowing combination of information from various sources including crystallographic experimental data and prior chemical and structural knowledge. The sources of prior knowledge relevant to macromolecules include basic chemical information such as bonds and angles, structural information from reference models of known homologs, knowledge about secondary structures, hydrogen bonding patterns, and similarity of non-crystallographically related copies of a molecule. Additionally, prior information encapsulating local conformational conservation is exploited, keeping local interatomic distances similar to those in the starting atomic model. The importance of designing an accurate likelihood function-the only link between model parameters and observed data-is emphasized. The review also reemphasizes the importance of phases, and describes how the use of raw observed amplitudes could give a better correlation between the calculated and "true" maps. It is shown that very noisy or absent observations can be replaced by calculated structure factors, weighted according to the accuracy of the atomic model. This approach helps to smoothen the map. However, such replacement should be used sparingly, as the bias toward errors in the model could be too much to avoid. It is in general recommended that, whenever a new map is calculated, map quality should be judged by inspection of the parts of the map where there is no atomic model. It is also noted that it is advisable to work with multiple blurred and sharpened maps, as different parts of a crystal may exhibit different degrees of mobility. Doing so can allow accurate building of atomic models, accounting for overall shape as well as finer structural details. Some of the results described in this review have been implemented in the programs REFMAC5, ProSMART and LORESTR, which are available as part of the CCP4 software suite.

Application of PALSAR-2 Remote Sensing Data for Landslide Hazard Mapping in Kelantan River Basin, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Beiranvand Pour, Amin; Hashim, Mazlan

2016-06-01

Yearly, several landslides ensued during heavy monsoons rainfall in Kelantan river basin, peninsular Malaysia, which are obviously connected to geological structures and topographical features of the region. In this study, the recently launched Phased Array type L-band Synthetic Aperture Radar-2 (PALSAR-2) onboard the Advanced Land Observing Satellite-2 (ALOS-2), remote sensing data were used to map geological structural and topographical features in the Kelantan river basin for identification of high potential risk and susceptible zones for landslides. Adaptive Local Sigma filter was selected and applied to accomplish speckle reduction and preserving both edges and features in PALSAR-2 fine mode observation images. Different polarization images were integrated to enhance geological structures. Additionally, directional filters were applied to the PALSAR-2 Local Sigma resultant image for edge enhancement and detailed identification of linear features. Several faults, drainage patterns and lithological contact layers were identified at regional scale. In order to assess the results, fieldwork and GPS survey were conducted in the landslide affected zones in the Kelantan river basin. Results demonstrate the most of the landslides were associated with N-S, NNW-SSE and NE-SW trending faults, angulated drainage pattern and metamorphic and Quaternary units. Consequently, structural and topographical geology maps were produced for Kelantan river basin using PALSAR-2 data, which could be broadly applicable for landslide hazard mapping.

Mineral deposits in western Saudi Arabia; a preliminary report

USGS Publications Warehouse

Roberts, Ralph Jackson; Greenwood, William R.; Worl, Ronald G.; Dodge, F.C.W.; Kiilsgaard, Thor H.

1975-01-01

In order to effectively carry on a search for new mineral deposits, the belts should be mapped in detail, with emphasis on the delineation of stratigraphic and structural features that control metallization. In addition, geochemical and geophysical studies should be made of promising areas to outline exploration targets. These targets could then be systematically explored.

Cultural Adventures for the Google[TM] Generation

ERIC Educational Resources Information Center

Dann, Tammy

2010-01-01

Google Earth is a computer program that allows users to view the Earth through satellite imagery and maps, to see cities from above and through street views, and to search for addresses and browse locations. Many famous buildings and structures from around the world have detailed 3D views accessible on Google Earth. It is possible to explore the…

Into the third dimension: Benefits of incorporating LiDAR data in wildlife habitat models

Treesearch

Melissa J. Merrick; John L. Koprowski; Craig Wilcox

2013-01-01

LiDAR (Light detection and ranging) is a tool with potential for characterizing wildlife habitat by providing detailed, three-dimensional landscape information not available from other remote sensing applications. The ability to accurately map structural components such as canopy height, canopy cover, woody debris, tree density, and ground surface has potential to...

An Analysis of Conceptual Flow Patterns and Structures in the Physics Classroom

ERIC Educational Resources Information Center

Eshach, Haim

2010-01-01

The aim of the current research is to characterize the conceptual flow processes occurring in whole-class dialogic discussions with a high level of interanimation; in the present case, of a high-school class learning about image creation on plane mirrors. Using detailed chains of interaction and conceptual flow discourse maps--both developed for…

Three-dimensional distribution of polymorphs and magnesium in a calcified underwater attachment system by diffraction tomography

PubMed Central

Leemreize, Hanna; Almer, Jonathan D.; Stock, Stuart R.; Birkedal, Henrik

2013-01-01

Biological materials display complicated three-dimensional hierarchical structures. Determining these structures is essential in understanding the link between material design and properties. Herein, we show how diffraction tomography can be used to determine the relative placement of the calcium carbonate polymorphs calcite and aragonite in the highly mineralized holdfast system of the bivalve Anomia simplex. In addition to high fidelity and non-destructive mapping of polymorphs, we use detailed analysis of X-ray diffraction peak positions in reconstructed powder diffraction data to determine the local degree of Mg substitution in the calcite phase. These data show how diffraction tomography can provide detailed multi-length scale information on complex materials in general and of biomineralized tissues in particular. PMID:23804437

Geologic Map of the Stafford Quadrangle, Stafford County, Virginia

USGS Publications Warehouse

Mixon, Robert B.; Pavlides, Louis; Horton, J. Wright; Powars, David S.; Schindler, J. Stephen

2005-01-01

Introduction The Stafford 7.5-minute quadrangle, comprising approximately 55 square miles (142.5 square kilometers) of northeastern Virginia, is about 40 miles (mi) south of Washington, D.C. The region's main north-south transportation corridor, which connects Washington, D.C., and Richmond, Va., consists of Interstate 95, U.S. Highway 1, and the heavily used CSX and Amtrak railroads. Although the northern and eastern parts of the Stafford quadrangle have undergone extensive suburban development, the remainder of the area is still dominantly rural in character. The town of Stafford is the county seat. The Stafford 7.5-minute quadrangle is located in the Fredericksburg 30'x60' quadrangle, where information on the regional stratigraphy and structure is available from Mixon and others' (2000) geologic map and multichapter explanatory text. In addition to straddling the 'Fall Zone' boundary between the Appalachian Piedmont and the Atlantic Coastal Plain provinces, this quadrangle contains the best preserved and best studied segment of the Stafford fault system, an important example of late Cenozoic faulting in eastern North America (Mixon and Newell, 1977). This 1:24,000-scale geologic map provides a detailed framework for interpreting and integrating topical studies of that fault system. Our geologic map integrates more than two decades of intermittent geologic mapping and related investigations by the authors in this part of the Virginia Coastal Plain. Earlier mapping in the Piedmont by Pavlides (1995) has been revised by additional detailed mapping in selected areas, particularly near Abel Lake and Smith Lake, and by field evaluation of selected contact relations.

Newly Collected Multibeam Swath Bathymetry Data Herald a New Phase in Gas-hydrate Research on Lake Baikal

NASA Astrophysics Data System (ADS)

Naudts, L.; Khlystov, O.; Khabuev, A.; Seminskiy, I.; Casier, R.; Cuylaerts, M.; 'chenko, P., General; Synaeve, J.; Vlamynck, N.; de Batist, M. A.; Grachev, M. A.

2009-12-01

Lake Baikal is a large rift lake in Southern Siberia (Russian Federation). It occupies the three central depressions of the Baikal Rift Zone (BRZ): i.e. the Southern, Central and Northern Baikal Basins. Rifting started ca. 30 Ma ago and is still active with a present-day average extension rate of about 4 mm/yr. With a depth of 1637 m, Lake Baikal is the deepest lake in the World. It also holds 20 % of the world’s liquid surface fresh water, which makes it the largest lake in the World in terms of volume. Lake Baikal is also the only freshwater lake in the World with demonstrated occurrences of gas hydrates in its sedimentary infill. Methane hydrates are stable at water depths below 375 m. The presence of hydrates in the sedimentary infill is evidenced by a widespread BSR. Hydrates have also been encountered locally, in the near-bottom sediments of mud-volcano-like structures. In the summer of 2009, the lake floor has been mapped with multibeam swath bathymetry for the first time during a two-month-long survey with RV Titov. Swath bathymetry data were acquired with RCMG’s mobile 50 kHz SeaBeam 1050 multibeam system. In total 12600 km of echosounder tracks were sailed covering 15000 km2, including the Academician Ridge Accommodation Zone, the Central Baikal Basin, the Selenga Delta Accommodation Zone en the South Baikal Basin. In general, the lake floor was mapped starting from water depths of about -200 m to -1637 m, with an average survey depth of -1000 m. The new bathymetric data image the lake-floor morphology in unprecedented detail, revealing many small- and large-scall morphosedimentary, morphostructural and fluid-flow-related features, many of which were hitherto unknown. Known mud-volcano provinces in the Southern and Central Baikal Basins (i.e. the Posolsky Bank mud-volcano province, the Kukuy Canyon mud volcano province and the Olkhon Gate mud-volcano province) were mapped in detail, and several new, often isolated, mud-volcano-like structures were discovered. In addition, different possible fluid-flow features were identified in front of the Selenga Delta. Also the gas-hydrate-bearing areas around the oil seeps of Gorevoi Utes and the methane seeps of Goloustnoye have been mapped in detail, revealing that these hydrate occurrences are not associated with mud-volcano-like structures. The multibeam mapping survey coincided with the 2nd season of exploration of the lake floor by manned MIR submersibles (http://baikalfund.ru/eng/projects/expedition/index.wbp). Several of the MIR dives focused on features imaged by the new bathymetry data, such as gas-hydrate occurrences at methane seeps and oil seeps and in the mud-volcano-like structures, and gas seeps and fluid-flow phenomena along active fault scarps. The multibeam mapping survey was conducted in the framework of SBRAS project 17.8 and FWO Flanders project 1.5.198.09.

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.

PubMed

Yan, Koon-Kiu; Yardimci, Galip Gürkan; Yan, Chengfei; Noble, William S; Gerstein, Mark

2017-07-15

Genome-wide proximity ligation based assays like Hi-C have opened a window to the 3D organization of the genome. In so doing, they present data structures that are different from conventional 1D signal tracks. To exploit the 2D nature of Hi-C contact maps, matrix techniques like spectral analysis are particularly useful. Here, we present HiC-spector, a collection of matrix-related functions for analyzing Hi-C contact maps. In particular, we introduce a novel reproducibility metric for quantifying the similarity between contact maps based on spectral decomposition. The metric successfully separates contact maps mapped from Hi-C data coming from biological replicates, pseudo-replicates and different cell types. Source code in Julia and Python, and detailed documentation is available at https://github.com/gersteinlab/HiC-spector . koonkiu.yan@gmail.com or mark@gersteinlab.org. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Geological map and digital database of the San Rafael Mtn. 7.5-minute quadrangle, Santa Barbara County, California

USGS Publications Warehouse

Vedder, John G.; Stanley, Richard G.; Graham, S.E.; Valin, Z.C.

2001-01-01

Geologic mapping of the San Rafael Primitive Area (now the San Rafael Wilderness) by Gower and others (1966) and Vedder and others (1967) did not include all of the San Rafael Mtn. quadrangle, and the part that was mapped was done in reconnaissance fashion. To help resolve some of the structural and stratigraphic ambiguities of the earlier mapping and to complete the mapping of the quadrangle, additional field work was done during short intervals in 1980 and 1981 and from 1996 to 1998. Contacts within the belt of Franciscan rocks at the southwestern corner of the quadrangle were generalized from the detailed map by Wahl (1998). Because extensive areas were inaccessible owing to impenetrable chaparral, observations from several helicopter overflights (1965, 1980, 1981) and interpretations from aerial photographs were used as compilation aids. Consequently, some of the depicted contacts and faults are highly inferential, particularly within the Upper Cretaceous rocks throughout the middle part of the quadrangle.

Construction of a Transcription Map for Papillomaviruses using RACE, RNAse Protection and Primer Extension Assays

PubMed Central

Wang, Xiaohong; Zheng, Zhi-Ming

2016-01-01

Papillomaviruses are a family of small, non-enveloped DNA tumor viruses. Knowing a complete transcription map from each papillomavirus genome can provide guidance for various papillomavirus studies. This unit provides detailed protocols to construct a transcription map of human papillomavirus type 18. The same approach can be easily adapted to other transcription map studies of any other papillomavirus genotype due to the high degree of conservation in the genome structure, organization and gene expression among papillomaviruses. The focused methods are 5’- and 3’- rapid amplification of cDNA ends (RACE), which are the techniques commonly used in molecular biology to obtain the full length RNA transcript or to map a transcription start site (TSS) or an RNA polyadenylation (pA) cleavage site. Primer walking RT-PCR is a method for studying splicing junction of RACE products. In addition, RNase protection assay and primer extension are also introduced as alternative methods in the mapping analysis. PMID:26855281

High-resolution forest mapping for behavioural studies in the Nature Reserve ‘Les Nouragues’, French Guiana

PubMed Central

Ringler, Max; Mangione, Rosanna; Pašukonis, Andrius; Rainer, Gerhard; Gyimesi, Kristin; Felling, Julia; Kronaus, Hannes; Réjou-Méchain, Maxime; Chave, Jérôme; Reiter, Karl; Ringler, Eva

2015-01-01

For animals with spatially complex behaviours at relatively small scales, the resolution of a global positioning system (GPS) receiver location is often below the resolution needed to correctly map animals’ spatial behaviour. Natural conditions such as canopy cover, canyons or clouds can further degrade GPS receiver reception. Here we present a detailed, high-resolution map of a 4.6 ha Neotropical river island and a 8.3 ha mainland plot with the location of every tree >5 cm DBH and all structures on the forest floor, which are relevant to our study species, the territorial frog Allobates femoralis (Dendrobatidae). The map was derived using distance- and compass-based survey techniques, rooted on dGPS reference points, and incorporates altitudinal information based on a LiDAR survey of the area. PMID:27053943

Structural controls on geothermal circulation in Surprise Valley, California: A re-evaluation of the Lake City fault zone

USGS Publications Warehouse

Anne E. Egger,; Glen, Jonathan; McPhee, Darcy K.

2014-01-01

Faults and fractures play an important role in the circulation of geothermal fluids in the crust, and the nature of that role varies according to structural setting and state of stress. As a result, detailed geologic and geophysical mapping that relates thermal springs to known structural features is essential to modeling geothermal systems. Published maps of Surprise Valley in northeastern California suggest that the “Lake City fault” or “Lake City fault zone” is a significant structural feature, cutting obliquely across the basin and connecting thermal springs across the valley. Newly acquired geophysical data (audio-magnetotelluric, gravity, and magnetic), combined with existing geochemical and geological data, suggest otherwise. We examine potential field profiles and resistivity models that cross the mapped Lake City fault zone. While there are numerous geophysical anomalies that suggest subsurface structures, they mostly do not coincide with the mapped traces of the Lake City fault zone, nor do they show a consistent signature in gravity, magnetics, or resistivities that would suggest a through-going fault that would promote connectivity through lateral fluid flow. Instead of a single, continuous fault, we propose the presence of a deformation zone associated with the growth of the range-front Surprise Valley fault. The implication for geothermal circulation is that this is a zone of enhanced porosity but lacks length-wise connectivity that could conduct fluids across the valley. Thermal fluid circulation is most likely controlled primarily by interactions between N-S–trending normal faults.

Using ecological zones to increase the detail of Landsat classifications

NASA Technical Reports Server (NTRS)

Fox, L., III; Mayer, K. E.

1981-01-01

Changes in classification detail of forest species descriptions were made for Landsat data on 2.2 million acres in northwestern California. Because basic forest canopy structures may exhibit very similar E-M energy reflectance patterns in different environmental regions, classification labels based on Landsat spectral signatures alone become very generalized when mapping large heterogeneous ecological regions. By adding a seven ecological zone stratification, a 167% improvement in classification detail was made over the results achieved without it. The seven zone stratification is a less costly alternative to the inclusion of complex collateral information, such as terrain data and soil type, into the Landsat data base when making inventories of areas greater than 500,000 acres.

Structural character of the Ghost Dance fault, Yucca Mountain, Nevada

USGS Publications Warehouse

Spengler, R.W.; Braun, C.A.; Linden, R.M.; Martin, L.G.; Ross-Brown, D. M.; Blackburn, R.L.

1993-01-01

Detailed structural mapping of an area that straddles the southern part of the Ghost Dance Fault has revealed the presence of several additional subparallel to anastomosing faults. These faults, mapped at a scale of 1:240, are: 1) dominantly north trending, 2) present on both the upthrown and downthrown sides of the surface trace of the Ghost Dance fault, 3) near-vertical features that commonly offset strata down to the west by 3 to 6 m (10 to 20 ft), and 4) commonly spaced 15 to 46 m (50 to 150 ft) apart. The zone also exhibits a structural fabric, containing an abundance of northwest-trending fractures. The width of the zone appears to be at least 213 m (700 ft) near the southernmost boundary of the study area but remains unknown near the northern extent of the study area, where the width of the study area is only 183 m (600 ft).

Digital structural interpretation of mountain-scale photogrammetric 3D models (Kamnik Alps, Slovenia)

NASA Astrophysics Data System (ADS)

Dolžan, Erazem; Vrabec, Marko

2015-04-01

From the earliest days of geological science, mountainous terrains with their extreme topographic relief and sparse to non-existent vegetation were utilized to a great advantage for gaining 3D insight into geological structure. But whereas Alpine vistas may offer perfect panoramic views of geology, the steep mountain slopes and vertical cliffs make it very time-consuming and difficult (if not impossible) to acquire quantitative mapping data such as precisely georeferenced traces of geological boundaries and attitudes of structural planes. We faced this problem in mapping the central Kamnik Alps of northern Slovenia, which are built up from Mid to Late Triassic succession of carbonate rocks. Polyphase brittle tectonic evolution, monotonous lithology and the presence of temporally and spatially irregular facies boundary between bedded platform carbonates and massive reef limestones considerably complicate the structural interpretation of otherwise perfectly exposed, but hardly accessible massif. We used Agisoft Photoscan Structure-from-Motion photogrammetric software to process a series of overlapping high-resolution (~0.25 m ground resolution) vertical aerial photographs originally acquired by the Geodetic Authority of the Republic of Slovenia for surveying purposes, to derive very detailed 3D triangular mesh models of terrain and associated photographic textures. Phototextures are crucial for geological interpretation of the models as they provide additional levels of detail and lithological information which is not resolvable from geometrical mesh models alone. We then exported the models to Paradigm Gocad software to refine and optimize the meshing. Structural interpretation of the models, including mapping of traces and surfaces of faults and stratigraphic boundaries and determining dips of structural planes, was performed in MVE Move suite which offers a range of useful tools for digital mapping and interpretation. Photogrammetric model was complemented by georeferenced geological field data acquired along mountain trail transects, mainly using the MVE Field Move software application. In our experience, vertical aerophotos were sufficient to generate precise surface models in all but the steepest mountain cliffs. Therefore, using existing vertical photoimagery (where available) is a very cost-effective alternative to organizing shooting campaigns with rented aircraft. For handling reasonably large models (cca 3 x 3 km, up to 10 million triangles), a low-end computer workstation with mid-range professional 3D graphic card is sufficient. The biggest bottleneck is the photogrammetric processing step which is time-consuming (10s of hrs) and has large RAM requirements, although those can be offset by dividing models into smaller parts. The major problem with geological modeling software like Gocad or Move is that it at present does not handle well projecting of phototextures. Whereas Photoscan-generated orthophotos can be vertically projected onto mesh models, this results in unacceptable distortions and gaps in subvertical or overhanging parts of the mountain cliff models. A real 3D UV texture mapping method, such as implemented in Photoscan, would be required to realistically model such areas. This limitations notwithstanding, digital geological mapping of photogrammetric models of mountains is a very promising, cost- and time-effective method for rapid structural interpretation and mapping of barren mountainous terrains, particularly when it is complemented by field measurements and observations.

Structure of the PSD-95/MAP1A complex reveals a unique target recognition mode of the MAGUK GK domain.

PubMed

Xia, Yitian; Shang, Yuan; Zhang, Rongguang; Zhu, Jinwei

2017-08-10

The PSD-95 family of membrane-associated guanylate kinases (MAGUKs) are major synaptic scaffold proteins and play crucial roles in the dynamic regulation of dendritic remodelling, which is understood to be the foundation of synaptogenesis and synaptic plasticity. The guanylate kinase (GK) domain of MAGUK family proteins functions as a phosphor-peptide binding module. However, the GK domain of PSD-95 has been found to directly bind to a peptide sequence within the C-terminal region of neuronal-specific microtubule-associated protein 1A (MAP1A), although the detailed molecular mechanism governing this phosphorylation-independent interaction at the atomic level is missing. In the present study, we determine the crystal structure of PSD-95 GK in complex with the MAP1A peptide at 2.6-Å resolution. The complex structure reveals that, unlike a linear and elongated conformation in the phosphor-peptide/GK complexes, the MAP1A peptide adopts a unique conformation with a stretch of hydrophobic residues far from each other in the primary sequence clustering and interacting with the 'hydrophobic site' of PSD-95 GK and a highly conserved aspartic acid of MAP1A (D2117) mimicking the phosphor-serine/threonine in binding to the 'phosphor-site' of PSD-95 GK. We demonstrate that the MAP1A peptide may undergo a conformational transition upon binding to PSD-95 GK. Further structural comparison of known DLG GK-mediated complexes reveals the target recognition specificity and versatility of DLG GKs. © 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Numerical Aspects of Eigenvalue and Eigenfunction Computations for Chaotic Quantum Systems

NASA Astrophysics Data System (ADS)

Bäcker, A.

Summary: We give an introduction to some of the numerical aspects in quantum chaos. The classical dynamics of two-dimensional area-preserving maps on the torus is illustrated using the standard map and a perturbed cat map. The quantization of area-preserving maps given by their generating function is discussed and for the computation of the eigenvalues a computer program in Python is presented. We illustrate the eigenvalue distribution for two types of perturbed cat maps, one leading to COE and the other to CUE statistics. For the eigenfunctions of quantum maps we study the distribution of the eigenvectors and compare them with the corresponding random matrix distributions. The Husimi representation allows for a direct comparison of the localization of the eigenstates in phase space with the corresponding classical structures. Examples for a perturbed cat map and the standard map with different parameters are shown. Billiard systems and the corresponding quantum billiards are another important class of systems (which are also relevant to applications, for example in mesoscopic physics). We provide a detailed exposition of the boundary integral method, which is one important method to determine the eigenvalues and eigenfunctions of the Helmholtz equation. We discuss several methods to determine the eigenvalues from the Fredholm equation and illustrate them for the stadium billiard. The occurrence of spurious solutions is discussed in detail and illustrated for the circular billiard, the stadium billiard, and the annular sector billiard. We emphasize the role of the normal derivative function to compute the normalization of eigenfunctions, momentum representations or autocorrelation functions in a very efficient and direct way. Some examples for these quantities are given and discussed.

A device for multimodal imaging of skin

NASA Astrophysics Data System (ADS)

Spigulis, Janis; Garancis, Valerijs; Rubins, Uldis; Zaharans, Eriks; Zaharans, Janis; Elste, Liene

2013-03-01

A compact prototype device for diagnostic imaging of skin has been developed and tested. Polarized LED light at several spectral regions is used for illumination, and round skin spot of diameter 30mm is imaged by a CMOS sensor via crossoriented polarizing filter. Four consecutive imaging series are performed: (1) RGB image at white LED illumination for revealing subcutaneous structures; (2) four spectral images at narrowband LED illumination (450nm, 540nm, 660nm, 940nm) for mapping of the main skin chromophores; (3) video-imaging under green LED illumination for mapping of skin blood perfusion; (4) autofluorescence video-imaging under UV (365nm) LED irradiation for mapping of the skin fluorophores. Design details of the device as well as preliminary results of clinical tests are presented.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halliday, M.E.; Cook, K.L.

Regional gravity data were collected in portions of the Pavant Range, Tushar Mountains, northern Sevier Plateau, the Antelope Range, and throughout Sevier Valley approximately between the towns of Richfield and Junction, Utah. Additionally, detailed gravity and ground magnetic data were collected in the vicinity of hot springs in both the Monroe and Joseph Known Geothermal Resource Areas (KGRA's) and subsurface geologic models were constructed. The regional gravity data were terrain corrected out to a distance of 167 km from the station and 948 gravity station values were compiled into a complete Bouguer gravity anomaly map of the survey area. Thismore » map shows a strong correlation with most structural features mapped in the survey area. Four regional gravity profiles were modeled using two-dimensional formerd and inverse algorithms.« less

How to design a cartographic continuum to help users to navigate between two topographic styles?

NASA Astrophysics Data System (ADS)

Ory, Jérémie; Touya, Guillaume; Hoarau, Charlotte; Christophe, Sidonie

2018-05-01

Geoportals and geovisualization tools provide to users various cartographic abstractions that describe differently a geographical space. Our purpose is to be able to design cartographic continuums, i.e. a set of in-between maps allowing users to navigate between two topographic styles. This paper addresses the problem of the interpolation between two topographic abstractions with different styles. We detail our approach in two steps. Firstly, we setup a comparison in order to identify which structural elements of a cartographic abstraction should be interpolated. Secondly, we propose an approach based on two design methods for maps interpolation.

Thermal structure of Sikhote Alin and adjacent areas based on spectral analysis of the anomalous magnetic field

NASA Astrophysics Data System (ADS)

Didenko, A. N.; Nosyrev, M. Yu.; Shevchenko, B. F.; Gilmanova, G. Z.

2017-11-01

The depth of the base of the magnetoactive layer and the geothermal gradient in the Sikhote Alin crust are estimated based on a method determining the Curie depth point of magnetoactive masses by using spectral analysis of the anomalous magnetic field. A detailed map of the geothermal gradient is constructed for the first time for the Sikhote Alin and adjacent areas of the Central Asian belt. Analysis of this map shows that the zones with a higher geothermal gradient geographically fit the areas with a higher level of seismicity.

Multipurpose bedrock surficial, and environmental geologic maps, New River valley, southwest Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schultz, A.; Collins, T.

1994-03-01

Multipurpose bedrock, surficial, and environmental geologic maps have recently been completed for portions of the Valley and Ridge province of southwest VA. The maps, at both 1:100,000 and 1:24,000 scales, show generalized and detailed bedrock geology grouped by lithology and environmental hazard associations. Also shown are a variety of alluvial, colluvial, debris flow, and landslide deposits, as well as karst features. Multidisciplinary research topics addressed during the mapping included slope evolution and geomorphology, drainage history and terrace distribution, ancient large-scale landsliding, and sinkhole development. The maps have been used by land-use planners and engineering firms in an evaluation of Appalachianmore » paleoseismicity and to assess potential groundwater contamination and subsidence in karst areas. The maps are being used for environmental hazard assessment and site selection of a proposed large electric powerline that crosses the Jefferson National Forest. Also, the maps are proving useful in planning for a public access interpretive geologic enter focused on large-scale slope failures. Some of the largest known landslides in eastern North America took place within the map area. Field comparisons and detailed structure mapping of similar features along the Front Range of the Colorado Rockies indicate that the landslides were probably emplaced during a single catastrophic event of short duration. Although the giles County seismic zone is nearby, stability analyses of slopes in the map area have shown that failure need not have been initiated by a seismic event. Several distinct colluvial units mapped within the area of landslides document a period of extensive weathering that postdates slide emplacement. Radiocarbon dates from landslide sag ponds indicate a minimum age of 9,860 B.P. for emplacement of some of the landslides. These results indicate that pre-slide colluvial and debris flow deposits are at least Pleistocene in age.« less

Shallow subsurface structure of the Wasatch fault, Provo segment, Utah, from integrated compressional and shear-wave seismic reflection profiles with implications for fault structure and development

USGS Publications Warehouse

McBride, J.H.; Stephenson, W.J.; Williams, R.A.; Odum, J.K.; Worley, D.M.; South, J.V.; Brinkerhoff, A.R.; Keach, R.W.; Okojie-Ayoro, A. O.

2010-01-01

Integrated vibroseis compressional and experimental hammer-source, shear-wave, seismic reflection profiles across the Provo segment of the Wasatch fault zone in Utah reveal near-surface and shallow bedrock structures caused by geologically recent deformation. Combining information from the seismic surveys, geologic mapping, terrain analysis, and previous seismic first-arrival modeling provides a well-constrained cross section of the upper ~500 m of the subsurface. Faults are mapped from the surface, through shallow, poorly consolidated deltaic sediments, and cutting through a rigid bedrock surface. The new seismic data are used to test hypotheses on changing fault orientation with depth, the number of subsidiary faults within the fault zone and the width of the fault zone, and the utility of integrating separate elastic methods to provide information on a complex structural zone. Although previous surface mapping has indicated only a few faults, the seismic section shows a wider and more complex deformation zone with both synthetic and antithetic normal faults. Our study demonstrates the usefulness of a combined shallow and deeper penetrating geophysical survey, integrated with detailed geologic mapping to constrain subsurface fault structure. Due to the complexity of the fault zone, accurate seismic velocity information is essential and was obtained from a first-break tomography model. The new constraints on fault geometry can be used to refine estimates of vertical versus lateral tectonic movements and to improve seismic hazard assessment along the Wasatch fault through an urban area. We suggest that earthquake-hazard assessments made without seismic reflection imaging may be biased by the previous mapping of too few faults. ?? 2010 Geological Society of America.

Mapping Successional Stages in a Wet Tropical Forest Using Landsat ETM+ and Forest Inventory Data

NASA Technical Reports Server (NTRS)

Goncalves, Fabio G.; Yatskov, Mikhail; dos Santos, Joao Roberto; Treuhaft, Robert N.; Law, Beverly E.

2010-01-01

In this study, we test whether an existing classification technique based on the integration of Landsat ETM+ and forest inventory data enables detailed characterization of successional stages in a wet tropical forest site. The specific objectives were: (1) to map forest age classes across the La Selva Biological Station in Costa Rica; and (2) to quantify uncertainties in the proposed approach in relation to field data and existing vegetation maps. Although significant relationships between vegetation height entropy (a surrogate for forest age) and ETM+ data were detected, the classification scheme tested in this study was not suitable for characterizing spatial variation in age at La Selva, as evidenced by the error matrix and the low Kappa coefficient (12.9%). Factors affecting the performance of the classification at this particular study site include the smooth transition in vegetation structure between intermediate and advanced successional stages, and the low sensitivity of NDVI to variations in vertical structure at high biomass levels.

The Orion Nebula in the Far-Infrared: High-J CO and fine-structure lines mapped by FIFI-LS/SOFIA

NASA Astrophysics Data System (ADS)

Klein, Randolf; Looney, Leslie W.; Cox, Erin; Fischer, Christian; Iserlohe, Christof; Krabbe, Alfred

2017-03-01

The Orion Nebula is the closest massive star forming region allowing us to study the physical conditions in such a region with high spatial resolution. We used the far infrared integral-field spectrometer, FIFI-LS, on-board the airborne observatory SOFIA to study the atomic and molecular gas in the Orion Nebula at medium spectral resolution. The large maps obtained with FIFI-LS cover the nebula from the BN/KL-object to the bar in several fine structure lines. They allow us to study the conditions of the photon-dominated region and the interface to the molecular cloud with unprecedented detail. Another investigation targeted the molecular gas in the BN/KL region of the Orion Nebula, which is stirred up by a violent explosion about 500 years ago. The explosion drives a wide angled molecular outflow. We present maps of several high-J CO observations, allowing us to analyze the heated molecular gas.

Experimental Results from a Resonant Dielectric Laser Accelerator

NASA Astrophysics Data System (ADS)

Yoder, Rodney; McNeur, Joshua; Sozer, Esin; Travish, Gil; Hazra, Kiran Shankar; Matthews, Brian; England, Joel; Peralta, Edgar; Wu, Ziran

2015-04-01

Laser-powered accelerators have the potential to operate with very large accelerating gradients (~ GV/m) and represent a path toward extremely compact colliders and accelerator technology. Optical-scale laser-powered devices based on field-shaping structures (known as dielectric laser accelerators, or DLAs) have been described and demonstrated recently. Here we report on the first experimental results from the Micro-Accelerator Platform (MAP), a DLA based on a slab-symmetric resonant optical-scale structure. As a resonant (rather than near-field) device, the MAP is distinct from other DLAs. Its cavity resonance enhances its accelerating field relative to the incoming laser fields, which are coupled efficiently through a diffractive optic on the upper face of the device. The MAP demonstrated modest accelerating gradients in recent experiments, in which it was powered by a Ti:Sapphire laser well below its breakdown limit. More detailed results and some implications for future developments will be discussed. Supported in part by the U.S. Defense Threat Reduction Agency (UCLA); U.S. Dept of Energy (SLAC); and DARPA (SLAC).

The Maurice field: New gas reserves from buried structure along the Oligocene trend of southwestern Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prescott, M.P.

1990-09-01

Significant new gas reserves have recently been discovered in the Marginulina texana sands along the Oligocene trend at the Maurice field. Detailed subsurface maps and seismic data are presented to exhibit the extent and nature of this local buried structure and to demonstrate future opportunities along the Oligocene trend. Since discovery in 1988, the MARG. TEX. RC has extended the Maurice field one-half mile south and has encountered over 170 ft of Marginulina texana pay Estimated reserves are in the order of 160 BCFG with limits of the reservoir still unknown. This reserve addition would increase the estimated ultimate ofmore » the Maurice field by over 70% from 220 BCFG to 380 BCFG. Cross sections across the field depict the new reservoir trap as a buried upthrown fault closure with an anticipated gas column of 700 ft. Interpretation of the origin of this local structure is that of a buried rotated fault block on an overall larger depositional structure. Detailed subsurface maps at the Marginulina texana and the overlying Miogypsinoides level are presented. These maps indicate that one common fault block is productive from two different levels. The deeper Marginulina texana sands are trapped on north dip upthrown to a southern boundary fault, Fault B. The overlying Miogypsinoides sands are trapped on south dip downthrown to a northern boundary fault, Fault A. The northern boundary fault, Fault A, was the Marginulina texana expansion fault and rotated that downthrown section to north dip. Because of the difference in dip between the two levels, the apex of the deeper Marginulina texana fault closure is juxtaposed by one mile south relative to the overlying Miogypsinoides fault closure. Analysis indicates that important structural growth occur-red during Marginulina texana deposition with a local unconformity covering the apex of the upthrown fault closure. State-of-the-art reconnaissance seismic data clearly exhibit this buried rotated fault block.« less

The structure of partially-premixed methane/air flames under varying premixing

NASA Astrophysics Data System (ADS)

Kluzek, Celine; Karpetis, Adonios

2008-11-01

The present work examines the spatial and scalar structure of laminar, partially premixed methane/air flames with the objective of developing flamelet mappings that capture the effect of varying premixture strength (air addition in fuel.) Experimental databases containing full thermochemistry measurements within laminar axisymmetric flames were obtained at Sandia National Laboratories, and the measurements of all major species and temperature are compared to opposed-jet one-dimensional flow simulation using Cantera and the full chemical kinetic mechanism of GRI 3.0. Particular emphasis is placed on the scalar structure of the laminar flames, and the formation of flamelet mappings that capture all of the salient features of thermochemistry in a conserved scalar representation. Three different premixture strengths were examined in detail: equivalence ratios of 1.8, 2.2, and 3.17 resulted in clear differences in the flame scalar structure, particularly in the position of the rich premixed flame zone and the attendant levels of major and intermediate species (carbon monoxide and hydrogen).

Probing Protein Structure by Amino Acid-Specific Covalent Labeling and Mass Spectrometry

PubMed Central

Mendoza, Vanessa Leah; Vachet, Richard W.

2009-01-01

For many years, amino acid-specific covalent labeling has been a valuable tool to study protein structure and protein interactions, especially for systems that are difficult to study by other means. These covalent labeling methods typically map protein structure and interactions by measuring the differential reactivity of amino acid side chains. The reactivity of amino acids in proteins generally depends on the accessibility of the side chain to the reagent, the inherent reactivity of the label and the reactivity of the amino acid side chain. Peptide mass mapping with ESI- or MALDI-MS and peptide sequencing with tandem MS are typically employed to identify modification sites to provide site-specific structural information. In this review, we describe the reagents that are most commonly used in these residue-specific modification reactions, details about the proper use of these covalent labeling reagents, and information about the specific biochemical problems that have been addressed with covalent labeling strategies. PMID:19016300

Detailed maps of tropical forest types are within reach: forest tree communities for Trinidad and Tobago mapped with multiseason Landsat and multiseason fine-resolution imagery

Treesearch

Eileen H. Helmer; Thomas S. Ruzycki; Jay Benner; Shannon M. Voggesser; Barbara P. Scobie; Courtenay Park; David W. Fanning; Seepersad Ramnarine

2012-01-01

Tropical forest managers need detailed maps of forest types for REDD+, but spectral similarity among forest types; cloud and scan-line gaps; and scarce vegetation ground plots make producing such maps with satellite imagery difficult. How can managers map tropical forest tree communities with satellite imagery given these challenges? Here we describe a case study of...

Mapping soil landscape as spatial continua: The Neural Network Approach

NASA Astrophysics Data System (ADS)

Zhu, A.-Xing

2000-03-01

A neural network approach was developed to populate a soil similarity model that was designed to represent soil landscape as spatial continua for hydroecological modeling at watersheds of mesoscale size. The approach employs multilayer feed forward neural networks. The input to the network was data on a set of soil formative environmental factors; the output from the network was a set of similarity values to a set of prescribed soil classes. The network was trained using a conjugate gradient algorithm in combination with a simulated annealing technique to learn the relationships between a set of prescribed soils and their environmental factors. Once trained, the network was used to compute for every location in an area the similarity values of the soil to the set of prescribed soil classes. The similarity values were then used to produce detailed soil spatial information. The approach also included a Geographic Information System procedure for selecting representative training and testing samples and a process of determining the network internal structure. The approach was applied to soil mapping in a watershed, the Lubrecht Experimental Forest, in western Montana. The case study showed that the soil spatial information derived using the neural network approach reveals much greater spatial detail and has a higher quality than that derived from the conventional soil map. Implications of this detailed soil spatial information for hydroecological modeling at the watershed scale are also discussed.

Folding Digital Mapping into a Traditional Field Camp Program

NASA Astrophysics Data System (ADS)

Kelley, D. F.

2011-12-01

Louisiana State University runs a field camp with a permanent fixed-base which has continually operated since 1928 in the Front Range just to the south of Colorado Springs, CO. The field camp program which offers a 6-credit hour course in Field Geology follows a very traditional structure. The first week is spent collecting data for the construction of a detailed stratigraphic column of the local geology. The second week is spent learning the skills of geologic mapping, while the third applies these skills to a more geologically complicated mapping area. The final three weeks of the field camp program are spent studying and mapping igneous and metamorphic rocks as well as conducting a regional stratigraphic correlation exercise. Historically there has been a lack of technology involved in this program. All mapping has been done in the field without the use of any digital equipment and all products have been made in the office without the use of computers. In the summer of 2011 the use of GPS units, and GIS software were introduced to the program. The exercise that was chosen for this incorporation of technology was one in which metamorphic rocks are mapped within Golden Gate Canyon State Park in Colorado. This same mapping exercise was carried out during the 2010 field camp session with no GPS or GIS use. The students in both groups had the similar geologic backgrounds, similar grade point averages, and similar overall performances at field camp. However, the group that used digital mapping techniques mapped the field area more quickly and reportedly with greater ease. Additionally, the students who used GPS and GIS included more detailed rock descriptions with their final maps indicating that they spent less time in the field focusing on mapping contacts between units. The outcome was a better overall product. The use of GPS units also indirectly caused the students to produce better field maps. In addition to greater ease in mapping, the use of GIS software to create maps was rewarding to the students and gave them mapping experience that is in line with industry standards.

Weak lensing shear and aperture mass from linear to non-linear scales

NASA Astrophysics Data System (ADS)

Munshi, Dipak; Valageas, Patrick; Barber, Andrew J.

2004-05-01

We describe the predictions for the smoothed weak lensing shear, γs, and aperture mass,Map, of two simple analytical models of the density field: the minimal tree model and the stellar model. Both models give identical results for the statistics of the three-dimensional density contrast smoothed over spherical cells and only differ by the detailed angular dependence of the many-body density correlations. We have shown in previous work that they also yield almost identical results for the probability distribution function (PDF) of the smoothed convergence, κs. We find that the two models give rather close results for both the shear and the positive tail of the aperture mass. However, we note that at small angular scales (θs<~ 2 arcmin) the tail of the PDF, , for negative Map shows a strong variation between the two models, and the stellar model actually breaks down for θs<~ 0.4 arcmin and Map < 0. This shows that the statistics of the aperture mass provides a very precise probe of the detailed structure of the density field, as it is sensitive to both the amplitude and the detailed angular behaviour of the many-body correlations. On the other hand, the minimal tree model shows good agreement with numerical simulations over all the scales and redshifts of interest, while both models provide a good description of the PDF, , of the smoothed shear components. Therefore, the shear and the aperture mass provide robust and complementary tools to measure the cosmological parameters as well as the detailed statistical properties of the density field.

Interactive NCORP Map Details Community Research Sites | Division of Cancer Prevention

Cancer.gov

An interactive map of the NCI Community Oncology Research Program (NCORP) with detailed information on hundreds of community sites that take part in clinical trials is available on the NCORP website. NCORP Map NCORP Community Sites, Minority/Underserved Community Sites, and Research Bases |

Development of management information system for land in mine area based on MapInfo

NASA Astrophysics Data System (ADS)

Wang, Shi-Dong; Liu, Chuang-Hua; Wang, Xin-Chuang; Pan, Yan-Yu

2008-10-01

MapInfo is current a popular GIS software. This paper introduces characters of MapInfo and GIS second development methods offered by MapInfo, which include three ones based on MapBasic, OLE automation, and MapX control usage respectively. Taking development of land management information system in mine area for example, in the paper, the method of developing GIS applications based on MapX has been discussed, as well as development of land management information system in mine area has been introduced in detail, including development environment, overall design, design and realization of every function module, and simple application of system, etc. The system uses MapX 5.0 and Visual Basic 6.0 as development platform, takes SQL Server 2005 as back-end database, and adopts Matlab 6.5 to calculate number in back-end. On the basis of integrated design, the system develops eight modules including start-up, layer control, spatial query, spatial analysis, data editing, application model, document management, results output. The system can be used in mine area for cadastral management, land use structure optimization, land reclamation, land evaluation, analysis and forecasting for land in mine area and environmental disruption, thematic mapping, and so on.

Impact of Machine-Translated Text on Entity and Relationship Extraction

DTIC Science & Technology

2014-12-01

20 1 1. Introduction Using social network analysis tools is an important asset in...semantic modeling software to automatically build detailed network models from unstructured text. Contour imports unstructured text and then maps the text...onto an existing ontology of frames at the sentence level, using FrameNet, a structured language model, and through Semantic Role Labeling ( SRL

Preliminary geologic map of the Black Mountain area northeast of Victorville, San Bernardino County, California

USGS Publications Warehouse

Stone, Paul

2006-01-01

The Black Mountain area is in the Mojave Desert about 20 km northeast of Victorville, California. The geology of this area is of interest primarily for its excellent exposures of the early Mesozoic Fairview Valley Formation, a sequence of weakly metamorphosed sedimentary rocks including a thick, commercially important unit of limestone conglomerate that has been mined for cement at Black Mountain Quarry for several decades. Recent geochronologic work has shown that the Fairview Valley Formation is probably of Early Jurassic age. This preliminary geologic map of the Black Mountain area depicts the stratigraphic and structural relations of the Fairview Valley Formation and the associated rocks, most notably the overlying Sidewinder Volcanics of Early(?), Middle, and Late(?) Jurassic age. The map is based on new field studies by the author designed to clarify details of the stratigraphy and structure unresolved by previous investigations. The map is considered preliminary because the ages of some geologic units critical for a satisfactory understanding of the stratigraphic and structural framework remain unknown. The map area also includes a segment of the Helendale Fault, one of several faults of known or inferred late Cenozoic right-lateral displacement that make up the Eastern California Shear Zone. The fault is marked by aligned northeast-facing scarps in Pleistocene or older alluvial deposits and the underlying bedrock units. Relations in the map area suggest that right-lateral displacement on the Helendale Fault probably does not exceed 2 km, a conclusion compatible with previous estimates of displacement on this fault based on relations both within and outside the Black Mountain area.

Mapping the Active Vents of Stromboli Volcano with an Unmanned Aerial Vehicle

NASA Astrophysics Data System (ADS)

Turner, N.; Houghton, B. F.; von der Lieth, J.; Hort, M. K.; Taddeucci, J.; Kueppers, U.; Ricci, T.; Gaudin, D.

2016-12-01

We present a new detailed map of the active vents of Stromboli volcano obtained from UAV flights in May 2016, when the active NE and SW craters were repeatedly mapped. Due to high levels of gas emissions and frequent explosions, fine-scale measurements of vent geometry from single flights were challenging. However, the compilation of data acquired over 12 flights used with Structure from Motion software allowed us to create a 10 cm Digital Elevation Model (DEM) offering a non-obstructed view into the active craters. Such direct observations permits us to constrain parameters such as vent geometry and depth with an unprecedented precision, thus potentially reducing the uncertainty of models depending on such inputs (e.g. conduit and acoustic models). Furthermore, the low-cost and safety of UAVs allows mapping changes at small temporal and spatial resolutions, making this technique complementary to monitoring efforts at active volcanoes.

Geologic Map of Upper Cretaceous and Tertiary Strata and Coal Stratigraphy of the Paleocene Fort Union Formation, Rawlins-Little Snake River Area, South-Central Wyoming

USGS Publications Warehouse

Hettinger, R.D.; Honey, J.G.; Ellis, M.S.; Barclay, C.S.V.; East, J.A.

2008-01-01

This report provides a map and detailed descriptions of geologic formations for a 1,250 square mile region in the Rawlins-Little Snake River coal field in the eastern part of the Washakie and Great Divide Basins of south-central Wyoming. Mapping of geologic formations and coal beds was conducted at a scale of 1:24,000 and compiled at a scale of 1:100,000. Emphasis was placed on coal-bearing strata of the China Butte and Overland Members of the Paleocene Fort Union Formation. Surface stratigraphic sections were measured and described and well logs were examined to determine the lateral continuity of individual coal beds; the coal-bed stratigraphy is shown on correlation diagrams. A structure contour and overburden map constructed on the uppermost coal bed in the China Butte Member is also provided.

The Price of Precision: Large-Scale Mapping of Forest Structure and Biomass Using Airborne Lidar

NASA Astrophysics Data System (ADS)

Dubayah, R.

2015-12-01

Lidar remote sensing provides one of the best means for acquiring detailed information on forest structure. However, its application over large areas has been limited largely because of its expense. Nonetheless, extant data exist over many states in the U.S., funded largely by state and federal consortia and mainly for infrastructure, emergency response, flood plain and coastal mapping. These lidar data are almost always acquired in leaf-off seasons, and until recently, usually with low point count densities. Even with these limitations, they provide unprecedented wall-to-wall mappings that enable development of appropriate methodologies for large-scale deployment of lidar. In this talk we summarize our research and lessons learned in deriving forest structure over regional areas as part of NASA's Carbon Monitoring System (CMS). We focus on two areas: the entire state of Maryland and Sonoma County, California. The Maryland effort used low density, leaf-off data acquired by each county in varying epochs, while the on-going Sonoma work employs state-of-the-art, high density, wall-to-wall, leaf-on lidar data. In each area we combine these lidar coverages with high-resolution multispectral imagery from the National Agricultural Imagery Program (NAIP) and in situ plot data to produce maps of canopy height, tree cover and biomass, and compare our results against FIA plot data and national biomass maps. Our work demonstrates that large-scale mapping of forest structure at high spatial resolution is achievable but products may be complex to produce and validate over large areas. Furthermore, fundamental issues involving statistical approaches, plot types and sizes, geolocation, modeling scales, allometry, and even the definitions of "forest" and "non-forest" must be approached carefully. Ultimately, determining the "price of precision", that is, does the value of wall-to-wall forest structure data justify their expense, should consider not only carbon market applications, but the other ways the underlying lidar data may be used.

Application of OpenStreetMap (OSM) to Support the Mapping Village in Indonesia

NASA Astrophysics Data System (ADS)

Swasti Kanthi, Nurin; Hery Purwanto, Taufik

2016-11-01

Geospatial Information is a important thing in this era, because the need for location information is needed to know the condition of a region. In 2015 the Indonesian government release detailed mapping in village level and their Parent maps Indonesian state regulatory standards set forth in Rule form Norm Standards, Procedures and Criteria for Mapping Village (NSPK). Over time Web and Mobile GIS was developed with a wide range of applications. The merger between detailed mapping and Web GIS is still rarely performed and not used optimally. OpenStreetMap (OSM) is a WebGIS which can be utilized as Mobile GIS providing sufficient information to the representative levels of the building and can be used for mapping the village.Mapping Village using OSM was conducted using remote sensing approach and Geographical Information Systems (GIS), which's to interpret remote sensing imagery from OSM. The study was conducted to analyzed how far the role of OSM to support the mapping of the village, it's done by entering the house number data, administrative boundaries, public facilities and land use into OSM with reference data and data image Village Plan. The results of the mapping portion villages in OSM as a reference map-making village and analyzed in accordance with NSPK for detailed mapping Rukun Warga (RW) is part of the village mapping. The use of OSM greatly assists the process of mapping the details of the region with data sources in the form of images and can be accessed for Open Source. But still need their care and updating the data source to maintain the validity of the data.

Digitally enhanced GLORIA images for petroleum exploration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prindle, R.O.; Lanz, K

1990-05-01

This poster presentation graphically depicts the geological and structural information that can be derived from digitally enhanced Geological Long Range Inclined Asdic (GLORIA) sonar images. This presentation illustrates the advantages of scale enlargement as an interpreter's tool in an offshore area within the Eel River Basin, Northern California. Sonographs were produced from digital tapes originally collected for the exclusive economic zone (EEZ)-SCAN 1984 survey, which was published in the Atlas of the Western Conterminous US at a scale of 1:500,000. This scale is suitable for displaying regional offshore tectonic features but does not have the resolution required for detailed geologicalmore » mapping necessary for petroleum exploration. Applications of digital enhancing techniques which utilize contrast stretching and assign false colors to wide-swath sonar imagery (approximately 40 km) with 50-m resolution enables the acquisition and interpretation of significantly more geological and structural data. This, combined with a scale enlargement to 1:100,000 and high contrast contact prints vs. the offset prints of the atlas, increases the resolution and sharpness of bathymetric features so that many more subtle features may be mapped in detail. A tectonic interpretation of these digitally enhanced GLORIA sonographs from the Eel River basin is presented, displaying anticlines, lineaments, ridge axis, pathways of sediment flow, and subtle doming. Many of these features are not present on published bathymetric maps and have not been derived from seismic data because the plan view spatial resolution is much less than that available from the GLORIA imagery.« less

The synoptic maps of Br from HMI observations

NASA Astrophysics Data System (ADS)

Hayashi, Keiji; Hoeksema, J. Todd; Liu, Sun; Yang, Xudong; Centeno, Rebecca; Leka, K. D.; Barnes, Graham

2012-03-01

The vector magnetic field measurement can, in principal, give the "true" radial component of the magnetic field. We prepare 4 types of synoptic maps of the radial photospheric magnetic field, from the vector magnetic field data disambiguated by means of the minimum energy method developed at NWRA/CoRA, the vector data determined under the potential-field acute assumption, and the vector data determined under the radial-acute assumption, and the standard line-of-sight magnetogram. The models of the global corona, the MHD and the PFSS, are applied to different types of maps. Although the three-dimensional structures of the global coronal magnetic field with different maps are similar and overall agreeing well the AIA full-disk images, noticeable differences among the model outputs are found especially in the high latitude regions. We will show details of these test maps and discuss the issues in determining the radial component of the photospheric magnetic field near the poles and limb.

Tubular Crystals and Helical Arrays: Structural Determination of HIV-1 Capsid Assemblies Using Iterative Helical Real-Space Reconstruction

PubMed Central

Zhang, Peijun; Meng, Xin; Zhao, Gongpu

2013-01-01

Helical structures are important in many different life forms and are well-suited for structural studies by cryo-EM. A unique feature of helical objects is that a single projection image contains all the views needed to perform a three-dimensional (3D) crystallographic reconstruction. Here, we use HIV-1 capsid assemblies to illustrate the detailed approaches to obtain 3D density maps from helical objects. Mature HIV-1 particles contain a conical- or tubular-shaped capsid that encloses the viral RNA genome and performs essential functions in the virus life cycle. The capsid is composed of capsid protein (CA) oligomers which are helically arranged on the surface. The N-terminal domain (NTD) of CA is connected to its C-terminal domain (CTD) through a flexible hinge. Structural analysis of two- and three-dimensional crystals provided molecular models of the capsid protein (CA) and its oligomer forms. We determined the 3D density map of helically assembled HIV-1 CA hexamers at 16 Å resolution using an iterative helical real-space reconstruction method. Docking of atomic models of CA-NTD and CA-CTD dimer into the electron density map indicated that the CTD dimer interface is retained in the assembled CA. Furthermore, molecular docking revealed an additional, novel CTD trimer interface. PMID:23132072

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Sang Beom; Dsilva, Carmeline J.; Debenedetti, Pablo G., E-mail: pdebene@princeton.edu

Understanding the mechanisms by which proteins fold from disordered amino-acid chains to spatially ordered structures remains an area of active inquiry. Molecular simulations can provide atomistic details of the folding dynamics which complement experimental findings. Conventional order parameters, such as root-mean-square deviation and radius of gyration, provide structural information but fail to capture the underlying dynamics of the protein folding process. It is therefore advantageous to adopt a method that can systematically analyze simulation data to extract relevant structural as well as dynamical information. The nonlinear dimensionality reduction technique known as diffusion maps automatically embeds the high-dimensional folding trajectories inmore » a lower-dimensional space from which one can more easily visualize folding pathways, assuming the data lie approximately on a lower-dimensional manifold. The eigenvectors that parametrize the low-dimensional space, furthermore, are determined systematically, rather than chosen heuristically, as is done with phenomenological order parameters. We demonstrate that diffusion maps can effectively characterize the folding process of a Trp-cage miniprotein. By embedding molecular dynamics simulation trajectories of Trp-cage folding in diffusion maps space, we identify two folding pathways and intermediate structures that are consistent with the previous studies, demonstrating that this technique can be employed as an effective way of analyzing and constructing protein folding pathways from molecular simulations.« less

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures.

PubMed

McGreevy, Ryan; Singharoy, Abhishek; Li, Qufei; Zhang, Jingfen; Xu, Dong; Perozo, Eduardo; Schulten, Klaus

2014-09-01

X-ray crystallography remains the most dominant method for solving atomic structures. However, for relatively large systems, the availability of only medium-to-low-resolution diffraction data often limits the determination of all-atom details. A new molecular dynamics flexible fitting (MDFF)-based approach, xMDFF, for determining structures from such low-resolution crystallographic data is reported. xMDFF employs a real-space refinement scheme that flexibly fits atomic models into an iteratively updating electron-density map. It addresses significant large-scale deformations of the initial model to fit the low-resolution density, as tested with synthetic low-resolution maps of D-ribose-binding protein. xMDFF has been successfully applied to re-refine six low-resolution protein structures of varying sizes that had already been submitted to the Protein Data Bank. Finally, via systematic refinement of a series of data from 3.6 to 7 Å resolution, xMDFF refinements together with electrophysiology experiments were used to validate the first all-atom structure of the voltage-sensing protein Ci-VSP.

The recondite intricacies of Zeeman Doppler mapping

NASA Astrophysics Data System (ADS)

Stift, M. J.; Leone, F.; Cowley, C. R.

2012-02-01

We present a detailed analysis of the reliability of abundance and magnetic maps of Ap stars obtained by Zeeman Doppler mapping (ZDM). It is shown how they can be adversely affected by the assumption of a mean stellar atmosphere instead of appropriate 'local' atmospheres corresponding to the actual abundances in a given region. The essence of the difficulties was already shown by Chandrasekhar's picket-fence model. The results obtained with a suite of Stokes codes written in the ADA programming language and based on modern line-blanketed atmospheres are described in detail. We demonstrate that the high metallicity values claimed to have been found in chemically inhomogeneous (horizontally and vertically) Ap star atmospheres would lead to local temperature structures, continuum and line intensities, and line shapes that differ significantly from those predicted by a mean stellar atmosphere. Unfortunately, past applications of ZDM have consistently overlooked the intricate aspects of metallicity with their all-pervading effects. The erroneous assumption of a mean atmosphere for a spotted star can lead to phase-dependent errors of uncomfortably large proportions at varying wavelengths both in the Stokes I and V profiles, making precise mapping of abundances and magnetic field vectors largely impossible. The relation between core and wings of the Hβ line changes, too, with possible repercussions on the determination of gravity and effective temperature. Finally, a ZDM analysis of the synthetic Stokes spectra of a spotted star reveals the disturbing differences between the respective abundance maps based on a mean atmosphere on the one hand, and on appropriate 'local' atmospheres on the other. We then discuss what this all means for published ZDM results. Our discussion makes it clear that realistic local atmospheres must be used, especially if credible small-scale structures are to be obtained. Recondite: dealing with very profound, difficult or abstruse subject matter; requiring special knowledge to be understood ().

3-Dimensional Geologic Modeling Applied to the Structural Characterization of Geothermal Systems: Astor Pass, Nevada, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siler, Drew L; Faulds, James E; Mayhew, Brett

2013-04-16

Geothermal systems in the Great Basin, USA, are controlled by a variety of fault intersection and fault interaction areas. Understanding the specific geometry of the structures most conducive to broad-scale geothermal circulation is crucial to both the mitigation of the costs of geothermal exploration (especially drilling) and to the identification of geothermal systems that have no surface expression (blind systems). 3-dimensional geologic modeling is a tool that can elucidate the specific stratigraphic intervals and structural geometries that host geothermal reservoirs. Astor Pass, NV USA lies just beyond the northern extent of the dextral Pyramid Lake fault zone near the boundarymore » between two distinct structural domains, the Walker Lane and the Basin and Range, and exhibits characteristics of each setting. Both northwest-striking, left-stepping dextral faults of the Walker Lane and kinematically linked northerly striking normal faults associated with the Basin and Range are present. Previous studies at Astor Pass identified a blind geothermal system controlled by the intersection of west-northwest and north-northwest striking dextral-normal faults. Wells drilled into the southwestern quadrant of the fault intersection yielded 94°C fluids, with geothermometers suggesting a maximum reservoir temperature of 130°C. A 3-dimensional model was constructed based on detailed geologic maps and cross-sections, 2-dimensional seismic data, and petrologic analysis of the cuttings from three wells in order to further constrain the structural setting. The model reveals the specific geometry of the fault interaction area at a level of detail beyond what geologic maps and cross-sections can provide.« less

Cosmological surveys with multi-object spectrographs

NASA Astrophysics Data System (ADS)

Colless, Matthew

2016-08-01

Multi-object spectroscopy has been a key technique contributing to the current era of `precision cosmology.' From the first exploratory surveys of the large-scale structure and evolution of the universe to the current generation of superbly detailed maps spanning a wide range of redshifts, multi-object spectroscopy has been a fundamentally important tool for mapping the rich structure of the cosmic web and extracting cosmological information of increasing variety and precision. This will continue to be true for the foreseeable future, as we seek to map the evolving geometry and structure of the universe over the full extent of cosmic history in order to obtain the most precise and comprehensive measurements of cosmological parameters. Here I briefly summarize the contributions that multi-object spectroscopy has made to cosmology so far, then review the major surveys and instruments currently in play and their prospects for pushing back the cosmological frontier. Finally, I examine some of the next generation of instruments and surveys to explore how the field will develop in coming years, with a particular focus on specialised multi-object spectrographs for cosmology and the capabilities of multi-object spectrographs on the new generation of extremely large telescopes.

Map scale effects on estimating the number of undiscovered mineral deposits

USGS Publications Warehouse

Singer, D.A.; Menzie, W.D.

2008-01-01

Estimates of numbers of undiscovered mineral deposits, fundamental to assessing mineral resources, are affected by map scale. Where consistently defined deposits of a particular type are estimated, spatial and frequency distributions of deposits are linked in that some frequency distributions can be generated by processes randomly in space whereas others are generated by processes suggesting clustering in space. Possible spatial distributions of mineral deposits and their related frequency distributions are affected by map scale and associated inclusions of non-permissive or covered geological settings. More generalized map scales are more likely to cause inclusion of geologic settings that are not really permissive for the deposit type, or that include unreported cover over permissive areas, resulting in the appearance of deposit clustering. Thus, overly generalized map scales can cause deposits to appear clustered. We propose a model that captures the effects of map scale and the related inclusion of non-permissive geologic settings on numbers of deposits estimates, the zero-inflated Poisson distribution. Effects of map scale as represented by the zero-inflated Poisson distribution suggest that the appearance of deposit clustering should diminish as mapping becomes more detailed because the number of inflated zeros would decrease with more detailed maps. Based on observed worldwide relationships between map scale and areas permissive for deposit types, mapping at a scale with twice the detail should cut permissive area size of a porphyry copper tract to 29% and a volcanic-hosted massive sulfide tract to 50% of their original sizes. Thus some direct benefits of mapping an area at a more detailed scale are indicated by significant reductions in areas permissive for deposit types, increased deposit density and, as a consequence, reduced uncertainty in the estimate of number of undiscovered deposits. Exploration enterprises benefit from reduced areas requiring detailed and expensive exploration, and land-use planners benefit from reduced areas of concern. ?? 2008 International Association for Mathematical Geology.

Documentation of Heritage Structures Through Geo-Crowdsourcing and Web-Mapping

NASA Astrophysics Data System (ADS)

Dhonju, H. K.; Xiao, W.; Shakya, B.; Mills, J. P.; Sarhosis, V.

2017-09-01

Heritage documentation has become increasingly urgent due to both natural impacts and human influences. The documentation of countless heritage sites around the globe is a massive project that requires significant amounts of financial and labour resources. With the concepts of volunteered geographic information (VGI) and citizen science, heritage data such as digital photographs can be collected through online crowd participation. Whilst photographs are not strictly geographic data, they can be geo-tagged by the participants. They can also be automatically geo-referenced into a global coordinate system if collected via mobile phones which are now ubiquitous. With the assistance of web-mapping, an online geo-crowdsourcing platform has been developed to collect and display heritage structure photographs. Details of platform development are presented in this paper. The prototype is demonstrated with several heritage examples. Potential applications and advancements are discussed.

Fortuna Tessera, Venus - Evidence of horizontal convergence and crustal thickening

NASA Technical Reports Server (NTRS)

Vorder Bruegge, R. W.; Head, J. W.

1989-01-01

Structural and tectonic patterns mapped in Fortuna Tessera are interpreted to reflect a change in the style and intensity of deformation from east to west, beginning with simple tessera terrain at relatively low topographic elevations in the east and progressing through increasingly complex deformation patterns and higher topography to Maxwell Montes in the West. These morphologic and topographic patterns are consistent with east-to-west convergence and compression and the increasing elevations are interpreted to be due to crustal thickening processes associated with the convergent deformational environment. Using an Airy isostatic model, crustal thicknesses of approximately 35 km for the initial tessera terrain, and crustal thicknesses of over 100 km for the Maxwell Montes region are predicted. Detailed mapping with Magellan data will permit the deconvolution of individual components and structures in this terrain.

Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: A case study at 11.7T

PubMed Central

Aggarwal, Manisha; Zhang, Jiangyang; Pletnikova, Olga; Crain, Barbara; Troncoso, Juan; Mori, Susumu

2013-01-01

A three-dimensional stereotaxic atlas of the human brainstem based on high resolution ex vivo diffusion tensor imaging (DTI) is introduced. The atlas consists of high resolution (125–255 μm isotropic) three-dimensional DT images of the formalin-fixed brainstem acquired at 11.7T. The DTI data revealed microscopic neuroanatomical details, allowing three-dimensional visualization and reconstruction of fiber pathways including the decussation of the pyramidal tract fibers, and interdigitating fascicles of the corticospinal and transverse pontine fibers. Additionally, strong grey-white matter contrasts in the apparent diffusion coefficient (ADC) maps enabled precise delineation of grey matter nuclei in the brainstem, including the cranial nerve and the inferior olivary nuclei. Comparison with myelin-stained histology shows that at the level of resolution achieved in this study, the structural details resolved with DTI contrasts in the brainstem were comparable to anatomical delineation obtained with histological sectioning. Major neural structures delineated from DTI contrasts in the brainstem are segmented and three-dimensionally reconstructed. Further, the ex vivo DTI data are nonlinearly mapped to a widely-used in vivo human brain atlas, to construct a high-resolution atlas of the brainstem in the Montreal Neurological Institute (MNI) stereotaxic coordinate space. The results demonstrate the feasibility of developing a 3D DTI based atlas for detailed characterization of brainstem neuroanatomy with high resolution and contrasts, which will be a useful resource for research and clinical applications. PMID:23384518

Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy.

PubMed

Fang, Chong; Frontiera, Renee R; Tran, Rosalie; Mathies, Richard A

2009-11-12

Tracing the transient atomic motions that lie at the heart of chemical reactions requires high-resolution multidimensional structural information on the timescale of molecular vibrations, which commonly range from 10 fs to 1 ps. For simple chemical systems, it has been possible to map out in considerable detail the reactive potential-energy surfaces describing atomic motions and resultant reaction dynamics, but such studies remain challenging for complex chemical and biological transformations. A case in point is the green fluorescent protein (GFP) from the jellyfish Aequorea victoria, which is a widely used gene expression marker owing to its efficient bioluminescence. This feature is known to arise from excited-state proton transfer (ESPT), yet the atomistic details of the process are still not fully understood. Here we show that femtosecond stimulated Raman spectroscopy provides sufficiently detailed and time-resolved vibrational spectra of the electronically excited chromophore of GFP to reveal skeletal motions involved in the proton transfer that produces the fluorescent form of the protein. In particular, we observe that the frequencies and intensities of two marker bands, the C-O and C = N stretching modes at opposite ends of the conjugated chromophore, oscillate out of phase with a period of 280 fs; we attribute these oscillations to impulsively excited low-frequency phenoxyl-ring motions, which optimize the geometry of the chromophore for ESPT. Our findings illustrate that femtosecond simulated Raman spectroscopy is a powerful approach to revealing the real-time nuclear dynamics that make up a multidimensional polyatomic reaction coordinate.

NASA-ISRO synthetic aperture radar (NISAR) for temporal tracking of iceberg calving events in the Antarctica

NASA Astrophysics Data System (ADS)

Jawak, S. D.; Luis, A. J.

2017-12-01

Estimating mass loss of the Antarctic ice sheet caused by iceberg calving is a challenging job. Antarctica is surrounded by a variety of large, medium and small sized ice shelves, glacier tongues and coastal areas without offshore floating ice masses. It is possible to monitor surface structures on the continental ice and the ice shelves as well as calved icebergs using NASA-ISRO synthetic aperture radar (NISAR) satellite images in future. The NISAR, which is planned to be launched in 2020, can be used as an all-weather and all-season system to classify the coastline of Antarctica to map patterns of surface structures close to the calving front. Additionally, classifying patterns and density of surface structures distributed over the ice shelves and ice tongues can be a challenging research where NISAR can be of a great advantage. So this work explores use of NISAR to map surface structures visible on ice shelves which can provide advisories to field teams. The ice shelf fronts has been categorized into various classes based on surface structures relative to the calving front within a 30 km-wide seaward strip. The resulting map of the classified calving fronts around Antarctica and their description would provide a detailed representation of crevasse formation and dominant iceberg in the southern ocean which pose a threat to navigation of Antarctic bound ships.

The roles of competition and habitat in the dynamics of populations and species distributions Ecology

Treesearch

Charles B. Yackulic; Janice Reid; James D. Nichols; James E. Hines; Raymond Davis; Eric Forsman

2014-01-01

The role of competition in structuring biotic communities at fine spatial scales is well known from detailed process-based studies. Our understanding of competition’s importance at broader scales is less resolved and mainly based on static species distribution maps. Here, we bridge this gap by examining the joint occupancy dynamics of an invading species (Barred Owl,...

Cas A-A Y2K status report

NASA Astrophysics Data System (ADS)

Rudnick, L.

2001-05-01

Cas A has continued to be a rich source of information as new telescopes and detailed observations have become available. In this Y2K update, I focus on the observational findings over the last five years in the areas of ejecta mapping, hydrodynamic structure and kinematics, and high energy particles. Readers are unfortunately left to their own devices on the intriguing point source. .

Structural Mapping of Paterae and Mountains on Io: Implications for Crustal Stresses and Feature Evolution

NASA Astrophysics Data System (ADS)

Ahern, A.; Radebaugh, J.; Christiansen, E. H.; Harris, R. A.

2015-12-01

Paterae and mountains are some of the most distinguishing and well-distributed surface features on Io, and they reveal the role of tectonism in Io's crust. Paterae, similar to calderas, are volcano-tectonic collapse features that often have straight margins. Io's mountains are some of the highest in the solar system and contain linear features that reveal crustal stresses. Paterae and mountains are often found adjacent to one another, suggesting possible genetic relationships. We have produced twelve detailed regional structural maps from high-resolution images of relevant features, where available, as well as a global structural map from the Io Global Color Mosaic. The regional structural maps identify features such as fractures, lineations, folds, faults, and mass wasting scarps, which are then interpreted in the context of global and regional stress regimes. A total of 1048 structural lineations have been identified globally. Preliminary analyses of major thrust and normal fault orientations are dominantly 90° offset from each other, suggesting the maximum contractional stresses leading to large mountain formation are not a direct result of tidal extension. Rather, these results corroborate the model of volcanic loading of the crust and global shortening, leading to thrust faulting and uplift of coherent crustal blocks. Several paterae, such as Hi'iaka and Tohil, are found adjacent to mountains inside extensional basins where lava has migrated up normal faults to erupt onto patera floors. Over time, mass wasting and volcanic resurfacing can change mountains from young, steep, and angular peaks to older, gentler, and more rounded hills. Mass wasting scarps make up 53% of all features identified. The structural maps highlight the significant effect of mass wasting on Io's surface, the evolution of mountains through time, the role of tectonics in the formation of paterae, and the formation of mountains through global contraction due to volcanism.

Seismicity and gravimetric studies of Cyrenaica platform and adjacent regions, northeastern Libya

NASA Astrophysics Data System (ADS)

Ben Suleman, abdunnur

2013-04-01

Cyrenaica, located in northeastern Libya, consists of two distinct tectonic provinces; the tectonically unstable northern Cyrenaica and the more stable Cyernaican platform to the south. This study represents detailed investigations that aim to focus on the structure and tectonic setting through a detailed Seismicity and gravity analysis. Seismicity of northeastern Libya is documented back to 262 A.D. when an earthquake destroyed the city of Ceryne. The same area was destroyed by an earthquake in 365 A.D, The city of Al-Maraj was heavily damaged in 1963 by an earthquake measuring 5,3 in the Richter scale. Data collected by the recently established Libyan National Seismograph Network confirms that northeastern Libya is seismically active with most of the activity concentrates on the northern part particularly in the city of Al-Maraj area. Seismic activity is also noticeable in the offshore area. Focal mechanism studies for a number of earthquakes recorded by the Libyan National Seismograph Network suggest that normal faulting is predominant. A gravity data base collected from a variety of sources was compiled to generate a Bouguer gravity anomaly map that represents the basic map used in the overall interpretations, as well as in generating more specialized gravity maps used in the detailed investigations. The Bouguer gravity map demonstrates that the northern inverted basins of Cyrenaica and the coastal plain of Al-Jabal Al-Akhdar show a raped northward increase in gravity values to up to 130 Mgal. In addition a series of steep faults that separates the unstable Al-Jabal Al-Akhdar from the more stable Cyrenaica platform as well as other faults within the platform were well delineated.

Development of an Unmanned Aerial System (UAS) for Scaling Terrestrial Ecosystem Traits

NASA Astrophysics Data System (ADS)

Meng, R.; McMahon, A. M.; Serbin, S.; Rogers, A.

2015-12-01

The next generation of Ecosystem and Earth System Models (EESMs) will require detailed information on ecosystem structure and function, including properties of vegetation related to carbon (C), water, and energy cycling, in order to project the future state of ecosystems. High spatial-temporal resolution measurements of terrestrial ecosystem are also important for EESMs, because they can provide critical inputs and benchmark datasets for evaluation of EESMs simulations across scales. The recent development of high-quality, low-altitude remote sensing platforms or small UAS (< 25 kg) enables measurements of terrestrial ecosystems at unprecedented temporal and spatial scales. Specifically, these new platforms can provide detailed information on patterns and processes of terrestrial ecosystems at a critical intermediate scale between point measurements and suborbital and satellite platforms. Given their potential for sub-decimeter spatial resolution, improved mission safety, high revisit frequency, and reduced operation cost, these platforms are of particular interest in the development of ecological scaling algorithms to parameterize and benchmark EESMs, particularly over complex and remote terrain. Our group is developing a small UAS platform and integrated sensor package focused on measurement needs for scaling and informing ecosystem modeling activities, as well as scaling and mapping plant functional traits. To do this we are developing an integrated software workflow and hardware package using off-the-shelf instrumentation including a high-resolution digital camera for Structure from Motion, spectroradiometer, and a thermal infrared camera. Our workflow includes platform design, measurement, image processing, data management, and information extraction. The fusion of 3D structure information, thermal-infrared imagery, and spectroscopic measurements, will provide a foundation for the development of ecological scaling and mapping algorithms. Our initial focus is in temperate forests but near-term research will expand into the high-arctic and eventually tropical systems. The results of this prototype study show that off-the-shelf technology can be used to develop a low-cost alternative for mapping plant traits and three-dimensional structure for ecological research.

Fitness Landscapes of Functional RNAs.

PubMed

Kun, Ádám; Szathmáry, Eörs

2015-08-21

The notion of fitness landscapes, a map between genotype and fitness, was proposed more than 80 years ago. For most of this time data was only available for a few alleles, and thus we had only a restricted view of the whole fitness landscape. Recently, advances in genetics and molecular biology allow a more detailed view of them. Here we review experimental and theoretical studies of fitness landscapes of functional RNAs, especially aptamers and ribozymes. We find that RNA structures can be divided into critical structures, connecting structures, neutral structures and forbidden structures. Such characterisation, coupled with theoretical sequence-to-structure predictions, allows us to construct the whole fitness landscape. Fitness landscapes then can be used to study evolution, and in our case the development of the RNA world.

Air Vehicle Integration and Technology Research (AVIATR). Task Order 0023: Predictive Capability for Hypersonic Structural Response and Life Prediction: Phase 2 - Detailed Design of Hypersonic Cruise Vehicle Hot-Structure

DTIC Science & Technology

2012-02-01

x Approved for public release; distribution unlimited. I-DEAS/ TMG Thermal analysis software IR Initial Review ITAR International Traffic in Arms...the finite element code I- DEAS/ TMG . A mesh refinement study was conducted on the first panel to determine the mesh density required to accurately...ng neer ng, pera ons ec no ogy oe ng esearc ec no ogy • heat transfer analysis conducted with I-DEAS/ TMG exercises mapping of temperatures to

Photoluminescence Mapping and Angle-Resolved Photoluminescence of MBE-Grown InGaAs/GaAs RC LED and VCSEL Structures

DTIC Science & Technology

2002-06-03

resonant-cavity light-emitting diodes (RC LEDs) and vertical-cavity surface-emitting lasers ( VCSELs )] fabricated from molecular beam epitaxy (MBE)-grown...grown 8470-631. by molecular beam epitaxy (MBE) using a Riber 32P E-mail address: muszal@ite.waw.pl (0. Muszalski). reactor. Details of the growth can be... molecular beams hit the center of a rotating sion features of RC LED and VCSEL structures, as well sample. However, due to the transversal distribution of as

Capturing Fine Details Involving Low-Cost Sensors -a Comparative Study

NASA Astrophysics Data System (ADS)

Rehany, N.; Barsi, A.; Lovas, T.

2017-11-01

Capturing the fine details on the surface of small objects is a real challenge to many conventional surveying methods. Our paper discusses the investigation of several data acquisition technologies, such as arm scanner, structured light scanner, terrestrial laser scanner, object line-scanner, DSLR camera, and mobile phone camera. A palm-sized embossed sculpture reproduction was used as a test object; it has been surveyed by all the instruments. The result point clouds and meshes were then analyzed, using the arm scanner's dataset as reference. In addition to general statistics, the results have been evaluated based both on 3D deviation maps and 2D deviation graphs; the latter allows even more accurate analysis of the characteristics of the different data acquisition approaches. Additionally, own-developed local minimum maps were created that nicely visualize the potential level of detail provided by the applied technologies. Besides the usual geometric assessment, the paper discusses the different resource needs (cost, time, expertise) of the discussed techniques. Our results proved that even amateur sensors operated by amateur users can provide high quality datasets that enable engineering analysis. Based on the results, the paper contains an outlook to potential future investigations in this field.

A hybrid 3D SEM reconstruction method optimized for complex geologic material surfaces.

PubMed

Yan, Shang; Adegbule, Aderonke; Kibbey, Tohren C G

2017-08-01

Reconstruction methods are widely used to extract three-dimensional information from scanning electron microscope (SEM) images. This paper presents a new hybrid reconstruction method that combines stereoscopic reconstruction with shape-from-shading calculations to generate highly-detailed elevation maps from SEM image pairs. The method makes use of an imaged glass sphere to determine the quantitative relationship between observed intensity and angles between the beam and surface normal, and the detector and surface normal. Two specific equations are derived to make use of image intensity information in creating the final elevation map. The equations are used together, one making use of intensities in the two images, the other making use of intensities within a single image. The method is specifically designed for SEM images captured with a single secondary electron detector, and is optimized to capture maximum detail from complex natural surfaces. The method is illustrated with a complex structured abrasive material, and a rough natural sand grain. Results show that the method is capable of capturing details such as angular surface features, varying surface roughness, and surface striations. Copyright © 2017 Elsevier Ltd. All rights reserved.

Near-Infrared Coloring via a Contrast-Preserving Mapping Model.

PubMed

Chang-Hwan Son; Xiao-Ping Zhang

2017-11-01

Near-infrared gray images captured along with corresponding visible color images have recently proven useful for image restoration and classification. This paper introduces a new coloring method to add colors to near-infrared gray images based on a contrast-preserving mapping model. A naive coloring method directly adds the colors from the visible color image to the near-infrared gray image. However, this method results in an unrealistic image because of the discrepancies in the brightness and image structure between the captured near-infrared gray image and the visible color image. To solve the discrepancy problem, first, we present a new contrast-preserving mapping model to create a new near-infrared gray image with a similar appearance in the luminance plane to the visible color image, while preserving the contrast and details of the captured near-infrared gray image. Then, we develop a method to derive realistic colors that can be added to the newly created near-infrared gray image based on the proposed contrast-preserving mapping model. Experimental results show that the proposed new method not only preserves the local contrast and details of the captured near-infrared gray image, but also transfers the realistic colors from the visible color image to the newly created near-infrared gray image. It is also shown that the proposed near-infrared coloring can be used effectively for noise and haze removal, as well as local contrast enhancement.

Global Seabed Materials and Habitats Mapped: The Computational Methods

NASA Astrophysics Data System (ADS)

Jenkins, C. J.

2016-02-01

What the seabed is made of has proven difficult to map on the scale of whole ocean-basins. Direct sampling and observation can be augmented with proxy-parameter methods such as acoustics. Both avenues are essential to obtain enough detail and coverage, and also to validate the mapping methods. We focus on the direct observations such as samplings, photo and video, probes, diver and sub reports, and surveyed features. These are often in word-descriptive form: over 85% of the records for site materials are in this form, whether as sample/view descriptions or classifications, or described parameters such as consolidation, color, odor, structures and components. Descriptions are absolutely necessary for unusual materials and for processes - in other words, for research. This project dbSEABED not only has the largest collection of seafloor materials data worldwide, but it uses advanced computing math to obtain the best possible coverages and detail. Included in those techniques are linguistic text analysis (e.g., Natural Language Processing, NLP), fuzzy set theory (FST), and machine learning (ML, e.g., Random Forest). These techniques allow efficient and accurate import of huge datasets, thereby optimizing the data that exists. They merge quantitative and qualitative types of data for rich parameter sets, and extrapolate where the data are sparse for best map production. The dbSEABED data resources are now very widely used worldwide in oceanographic research, environmental management, the geosciences, engineering and survey.

Sensitivity of Attitude Determination on the Model Assumed for ISAR Radar Mappings

NASA Astrophysics Data System (ADS)

Lemmens, S.; Krag, H.

2013-09-01

Inverse synthetic aperture radars (ISAR) are valuable instrumentations for assessing the state of a large object in low Earth orbit. The images generated by these radars can reach a sufficient quality to be used during launch support or contingency operations, e.g. for confirming the deployment of structures, determining the structural integrity, or analysing the dynamic behaviour of an object. However, the direct interpretation of ISAR images can be a demanding task due to the nature of the range-Doppler space in which these images are produced. Recently, a tool has been developed by the European Space Agency's Space Debris Office to generate radar mappings of a target in orbit. Such mappings are a 3D-model based simulation of how an ideal ISAR image would be generated by a ground based radar under given processing conditions. These radar mappings can be used to support a data interpretation process. E.g. by processing predefined attitude scenarios during an observation sequence and comparing them with actual observations, one can detect non-nominal behaviour. Vice versa, one can also estimate the attitude states of the target by fitting the radar mappings to the observations. It has been demonstrated for the latter use case that a coarse approximation of the target through an 3D-model is already sufficient to derive the attitude information from the generated mappings. The level of detail required for the 3D-model is determined by the process of generating ISAR images, which is based on the theory of scattering bodies. Therefore, a complex surface can return an intrinsically noisy ISAR image. E.g. when many instruments on a satellite are visible to the observer, the ISAR image can suffer from multipath reflections. In this paper, we will further analyse the sensitivity of the attitude fitting algorithms to variations in the dimensions and the level of detail of the underlying 3D model. Moreover, we investigate the ability to estimate the orientations of different spacecraft components with respect to each other from the fitting procedure.

Geologic map and database of the Roseburg 30' x 60' quadrangle, Douglas and Coos counties, Oregon

USGS Publications Warehouse

Wells, Ray E.; Jayko, A.S.; Niem, A.R.; Black, G.; Wiley, T.; Baldwin, E.; Molenaar, K.M.; Wheeler, K.L.; DuRoss, C.B.; Givler, R.W.

2001-01-01

The Roseburg 30' x 60' Quadrangle covers the southeastern margin of the Oregon Coast Range and its tectonic boundary with Mesozoic terranes of the Klamath Mountains (see figures 1 and 2 in pamphlet, also shown on map sheet). The geologic framework of the Roseburg area was established by the pioneering work of Diller (1898), Wells and Peck, (1961) and Ewart Baldwin (1974) and his students (see figure 3 in pamphlet, also shown on map sheet). Baldwin and his students focussed on the history of the Eocene Tyee basin, where the sediments lap across the tectonic boundary with the Mesozoic terranes and record the accretion of the Coast Range basement to the continent. Others have examined the sedimentary fill of the Tyee basin in detail, recognizing the deep marine turbidite facies of the Tyee Formation (Snavely and others, 1964) and proposing several models for the Eocene evolution of the forearc basin (Heller and Ryberg, 1983; Chan and Dott, 1983; Heller and Dickinson, 1985; Molenaar, 1985; see Ryu and others, 1992 for a comprehensive summary). Along the eastern margin of the quadrangle, both the Tyee basin and the Klamath terranes are overlain by Eocene volcanic rocks of the Western Cascade arc (Walker and MacLeod, 1991). The thick Eocene sedimentary sequence of the Tyee basin has significant oil and gas potential (Armentrout and Suek, 1985; Gautier and others, 1993; Ryu and others, 1996). Although 13 deep test wells have been drilled in the Roseburg quadrangle (see figure 2 and table 1 in pamphlet, also shown on map sheet), exploration to date has been hampered by an incomplete understanding of the basin�s tectonic setting and evolution. In response, the Oregon Department of Geology and Mineral Industries (DOGAMI) initiated a five year assessment of the oil and gas potential of the Tyee basin. This map is a product of a cooperative effort by the U. S. Geological Survey, Oregon State University, and DOGAMI to systematically map the sedimentary facies and structure of the Tyee basin. New geologic mapping of twenty-eight 7.5' quadrangles is summarized on the map (see figure 3, also shown on map sheet), and the digital database contains geologic information suitable for both 1:100K and 1:24K scale analysis. DOGAMI has published a compilation and synthesis of previous mapping (Niem and Niem, 1990), a basin-wide sequence stratigraphic model and correlations (Ryu and others, 1992), and a report on the oil and gas potential (Ryu and others, 1996). Readers interested in the oil and gas potential of the Roseburg quadrangle should use the map in combination with Ryu and others (1996) to address specific stratigraphic units and structural plays. Stratigraphic terminology for the Tyee basin adopts the type sections, formation names, and framework of Ryu and others (1992, 1996), which were developed concurrently with the mapping and are recognized throughout the basin. For detailed discussion of nomenclature, type sections, lithology, thickness and distribution, age, contact relationships, and depositional environment of stratigraphic units, the reader is referred to Ryu and others (1992). In this report we focus on the spatial, temporal, and structural relationships between units revealed by geologic mapping. Map unit ages (see figure 4 in pamphlet, also shown on map sheeet) are adjusted slightly from Ryu and others (1992, 1996) to fit new coccolith age determinations (D. Bukry, cited in pamphlet), paleomagnetic polarity data (Simpson, 1977 and new data cited in pamphlet), and the time scale of Berggren and others (1995).

Assessing earthquake hazards with fault trench and LiDAR maps in the Puget Lowland, Washington, USA (Invited)

NASA Astrophysics Data System (ADS)

Nelson, A. R.; Bradley, L.; Personius, S. F.; Johnson, S. Y.

2010-12-01

Deciphering the earthquake histories of faults over the past few thousands of years in tectonically complex forearc regions relies on detailed site-specific as well as regional geologic maps. Here we present examples of site-specific USGS maps used to reconstruct earthquake histories for faults in the Puget Lowland. Near-surface faults and folds in the Puget Lowland accommodate 4-7 mm/yr of north-south shortening resulting from northward migration of forearc blocks along the Cascadia convergent margin. The shortening has produced east-trending uplifts, basins, and associated reverse faults that traverse urban areas. Near the eastern and northern flanks of the Olympic Mountains, complex interactions between north-south shortening and mountain uplift are reflected by normal, oblique-slip, and reverse surface faults. Holocene oblique-slip movement has also been mapped on Whidbey Island and on faults in the foothills of the Cascade Mountains in the northeastern lowland. The close proximity of lowland faults to urban areas may pose a greater earthquake hazard there than do much longer but more distant plate-boundary faults. LiDAR imagery of the densely forested lowland flown over the past 12 years revealed many previously unknown 0.5-m to 6-m-high scarps showing Holocene movement on upper-plate faults. This imagery uses two-way traveltimes of laser light pulses to detect as little as 0.2 m of relative relief on the forest floor. The returns of laser pulses with the longest travel times yield digital elevation models of the ground surface, which we vertically exaggerate and digitally shade from multiple directions at variable transparencies to enhance identification of scarps. Our maps include imagery at scales of 1:40,000 to 1:2500 with contour spacings of 100 m to 0.5 m. Maps of the vertical walls of fault-scarp trenches show complex stratigraphies and structural relations used to decipher the histories of large surface-rupturing earthquakes. These logs (field mapping at 1:8 to 1:20 scales) of 25 trenches are included in five published (and one in preparation) maps along with lithologic descriptions of stratigraphic units and tables of 14C, structural, and stratigraphic data. Maps include soil profile data, topographic profiles across scarps, structural orientation data, or photographs of trench sites or trench walls. Stratigraphy and 14C ages suggest that earthquake recurrence varies from less than a century to many thousands of years. Interpretation and synthesis of such data are reserved for journal papers, which commonly cannot accommodate the detailed, large-format information shown on the maps. Many thanks to Brian Sherrod, Harvey Kelsey, Jason Buck, Ray Wells, Liz Schermer, Rob Witter, Rich Koehler, Rich Briggs, Robert Bogar, Gary Henley, Dave Harding, Koji Okumura, Silvio Pezzopane, Bob Bucknam, Zeb Maharrey, Bill Laprade, Ralph Haugerud, Lee Liberty, Michael Polenz, Eliza Nemser, Trenton Cladouhos, and many others for days to many weeks of effort in our trenches over the past 12 years.

Evidence for a complex archean deformational history; southwestern Michipicoten Greenstone Belt, Ontario

NASA Technical Reports Server (NTRS)

Mcgill, George E.; Shrady, Catherine H.

1986-01-01

The Michipicoten Greenstone Belt extends for about 150 km ENE from the northeastern angle of Lake Superior. In common with many other Archean greenstone belts, it is characterized by generally steep bedding dips and a distribution of major lithologic types suggesting a crudely synclinal structure for the belt as a whole. Detailed mapping and determination of structural sequence demonstrates that the structure is much more complex. The Archean history of the belt includes formation of at least three regionally significant cleavages, kilometer-scale overturning, extensive shearing, and diabase intrusion. Most well defined, mappable 'packages' of sedimentary rocks appear to be bounded by faults. These faults were active relatively early in the structural history of the belt, when extensive overturning also occurred. Steepening of dips, NW-SE shortening, development of steep NE cleavage, and pervasive shearing all postdate the early faulting and the regional overturning, obscuring much of the detail needed to define the geometry of the earlier structures. The results obtained so far suggest, however, that the Michipicoten Greenstone Belt underwent an early stage of thrusting and associated isoclinal folding, probably in a convergent tectonic environment.

A Digital Tectonic Activity Map of the Earth

NASA Technical Reports Server (NTRS)

Lowman, Paul; Masuoka, Penny; Montgomery, Brian; OLeary, Jay; Salisbury, Demetra; Yates, Jacob

1999-01-01

The subject of neotectonics, covering the structures and structural activity of the last 5 million years (i.e., post-Miocene) is a well-recognized field, including "active tectonics," focussed on the last 500,000 years in a 1986 National Research Council report of that title. However, there is a cartographic gap between tectonic maps, generally showing all features regardless of age, and maps of current seismic or volcanic activity. We have compiled a map intended to bridge this gap, using modern data bases and computer-aided cartographic techniques. The maps presented here are conceptually descended from an earlier map showing tectonic and volcanic activity of the last one million years. Drawn by hand with the National Geographic Society's 1975 "The Physical World" map as a base, the 1981 map in various revisions has been widely reproduced in textbooks and various technical publications. However, two decades of progress call for a completely new map that can take advantage of new knowledge and cartographic techniques. The digital tectonic activity map (DTM), presented in shaded relief (Fig. 1) and schematic (Fig. 2) versions, is the result. The DTM is intended to show tectonism and volcanism of the last one million years, a period long enough to be representative of global activity, but short enough that features such as fault scarps and volcanos are still geomorphically recognizable. Data Sources and Cartographic Methods The DTM is based on a wide range of sources, summarized in Table 1. The most important is the digital elevation model, used to construct a shaded relief map. The bathymetry is largely from satellite altimetry, specifically the marine gravity compilations by Smith and Sandwell (1996). The shaded relief map was designed to match the new National Geographic Society world physical map (1992), although drawn independently, from the digital elevation model. The Robinson Projection is used instead of the earlier Van der Grinten one. Although neither conformal nor equal-area, the Robinson Projection provides a reasonable compromise and retains useful detail at high latitudes.

Amplitude interpretation and visualization of three-dimensional reflection data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Enachescu, M.E.

1994-07-01

Digital recording and processing of modern three-dimensional surveys allow for relative good preservation and correct spatial positioning of seismic reflection amplitude. A four-dimensional seismic reflection field matrix R (x,y,t,A), which can be computer visualized (i.e., real-time interactively rendered, edited, and animated), is now available to the interpreter. The amplitude contains encoded geological information indirectly related to lithologies and reservoir properties. The magnitude of the amplitude depends not only on the acoustic impedance contrast across a boundary, but is also strongly affected by the shape of the reflective boundary. This allows the interpreter to image subtle tectonic and structural elements notmore » obvious on time-structure maps. The use of modern workstations allows for appropriate color coding of the total available amplitude range, routine on-screen time/amplitude extraction, and late display of horizon amplitude maps (horizon slices) or complex amplitude-structure spatial visualization. Stratigraphic, structural, tectonic, fluid distribution, and paleogeographic information are commonly obtained by displaying the amplitude variation A = A(x,y,t) associated with a particular reflective surface or seismic interval. As illustrated with several case histories, traditional structural and stratigraphic interpretation combined with a detailed amplitude study generally greatly enhance extraction of subsurface geological information from a reflection data volume. In the context of three-dimensional seismic surveys, the horizon amplitude map (horizon slice), amplitude attachment to structure and [open quotes]bright clouds[close quotes] displays are very powerful tools available to the interpreter.« less

Physical properties of PNe: what IFU spectrographs can do?

NASA Astrophysics Data System (ADS)

Costa, R.; Lago, P. J. A.; Faes, D., M.

2014-04-01

Structure, kinematics and physical parameters of planetary nebulae are related to their progenitor stars. A better understanding of these properties is essential to improve the knowledge of the late stages of evolution of intermediate-mass stars, as well as to better understand the chemical enrichment mechanisms that feed the interstellar medium with the nucleosynthesis yields from such stars. Integral Field Unit (IFU) spectrographs can provide valuable information from these objects, mapping such properties point-to-point over the projected nebulae. In this communication we present the results of a survey of physical properties for southern PNe. We have used IFU spectroscopy in order to derive the angular distribution of electron densities and ionic abundances, and also to map the ionization profiles. The aim is to characterize their physical properties and structures, and results can be used in morpho-kinematical models (such as SHAPE) or in photoionization models (such as CLOUDY) to describe in detail the 3D structure and evolution of these objects.

Carbohydrate Microarray Technology Applied to High-Throughput Mapping of Plant Cell Wall Glycans Using Comprehensive Microarray Polymer Profiling (CoMPP).

PubMed

Kračun, Stjepan Krešimir; Fangel, Jonatan Ulrik; Rydahl, Maja Gro; Pedersen, Henriette Lodberg; Vidal-Melgosa, Silvia; Willats, William George Tycho

2017-01-01

Cell walls are an important feature of plant cells and a major component of the plant glycome. They have both structural and physiological functions and are critical for plant growth and development. The diversity and complexity of these structures demand advanced high-throughput techniques to answer questions about their structure, functions and roles in both fundamental and applied scientific fields. Microarray technology provides both the high-throughput and the feasibility aspects required to meet that demand. In this chapter, some of the most recent microarray-based techniques relating to plant cell walls are described together with an overview of related contemporary techniques applied to carbohydrate microarrays and their general potential in glycoscience. A detailed experimental procedure for high-throughput mapping of plant cell wall glycans using the comprehensive microarray polymer profiling (CoMPP) technique is included in the chapter and provides a good example of both the robust and high-throughput nature of microarrays as well as their applicability to plant glycomics.

Lithologic and structural mapping of the Abiete-Toko gold district in southern Cameroon, using Landsat 7 ETM+/SRTM

NASA Astrophysics Data System (ADS)

Binam Mandeng, Eugène Pascal; Bondjè Bidjeck, Louise Marie; Takodjou Wambo, Jonas Didero; Taku, Agbor; Bineli Betsi, Thierry; Solange Ipan, Antoinette; Tchami Nfada, Lionel; Bitom Dieudonné, Lucien

2018-03-01

The geology of the Abiete-Toko gold district in South Cameroon is investigated using a combination of Landsat 7 ETM+/SRTM image processing techniques, conventional geologic field mapping and geostatistical analysis. The satellite images were treated using Principal Component Analysis and Sobel filters to separate the background noise from lithotectonic structures which were matched with field data. The results show that this area has been affected by a polyphase deformation represented by S1 foliation, Sc1 schistosity, L1 lineation, S2 foliation, F2 folds, and F3 shear zones and faults. A detailed analysis of all the structures led to the identification of two major networks of dextral and sinistral shear zones oriented WNW-ESE and NE-SW, respectively. These results may serve in mining prospection, especially in the search for tectonically controlled primary mineralization and so may significantly guide the exploration of primary gold mineralization in the Abiete-Toko area subjected to years of artisanal gold mining.

Structural character of the Ghost Dance Fault, Yucca Mountain, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spengler, R.W.; Braun, C.A.; Linden, R.M.

1993-12-31

Detailed structural mapping of an area that straddles the southern part of the Ghost Dance Fault has revealed the presence of several additional subparallel to anastomosing faults. These faults, mapped at a scale of 1:240, are: (1) dominantly north-trending, (2) present on both the upthrown and downthrown sides of the surface trace of the Ghost Dance fault, (3) near-vertical features that commonly offset strata down to the west by 3 to 6 m (10 to 20 ft), and (4) commonly spaced 15 to 46 m (50 to 150 ft) apart. The zone also exhibits a structural fabric, containing an abundancemore » of northwest-trending fractures. The width of the zone appears to be at least 213 m (700 ft) near the southernmost boundary of the study area but remains unknown near the northern extent of the study area, where the width of the study area is only 183 m (600 ft).« less

Large Area Nondestructive Evaluation of a Fatigue Loaded Composite Structure

NASA Technical Reports Server (NTRS)

Zalameda, Joseph N.; Burke, Eric R.; Horne, Michael R.; Madaras, Eric I.

2016-01-01

Large area nondestructive evaluation (NDE) inspections are required for fatigue testing of composite structures to track damage initiation and growth. Of particular interest is the progression of damage leading to ultimate failure to validate damage progression models. In this work, passive thermography and acoustic emission NDE were used to track damage growth up to failure of a composite three-stringer panel. Fourteen acoustic emission sensors were placed on the composite panel. The signals from the array were acquired simultaneously and allowed for acoustic emission location. In addition, real time thermal data of the composite structure were acquired during loading. Details are presented on the mapping of the acoustic emission locations directly onto the thermal imagery to confirm areas of damage growth leading to ultimate failure. This required synchronizing the acoustic emission and thermal data with the applied loading. In addition, processing of the thermal imagery which included contrast enhancement, removal of optical barrel distortion and correction of angular rotation before mapping the acoustic event locations are discussed.

Mapping small molecule binding data to structural domains

PubMed Central

2012-01-01

Background Large-scale bioactivity/SAR Open Data has recently become available, and this has allowed new analyses and approaches to be developed to help address the productivity and translational gaps of current drug discovery. One of the current limitations of these data is the relative sparsity of reported interactions per protein target, and complexities in establishing clear relationships between bioactivity and targets using bioinformatics tools. We detail in this paper the indexing of targets by the structural domains that bind (or are likely to bind) the ligand within a full-length protein. Specifically, we present a simple heuristic to map small molecule binding to Pfam domains. This profiling can be applied to all proteins within a genome to give some indications of the potential pharmacological modulation and regulation of all proteins. Results In this implementation of our heuristic, ligand binding to protein targets from the ChEMBL database was mapped to structural domains as defined by profiles contained within the Pfam-A database. Our mapping suggests that the majority of assay targets within the current version of the ChEMBL database bind ligands through a small number of highly prevalent domains, and conversely the majority of Pfam domains sampled by our data play no currently established role in ligand binding. Validation studies, carried out firstly against Uniprot entries with expert binding-site annotation and secondly against entries in the wwPDB repository of crystallographic protein structures, demonstrate that our simple heuristic maps ligand binding to the correct domain in about 90 percent of all assessed cases. Using the mappings obtained with our heuristic, we have assembled ligand sets associated with each Pfam domain. Conclusions Small molecule binding has been mapped to Pfam-A domains of protein targets in the ChEMBL bioactivity database. The result of this mapping is an enriched annotation of small molecule bioactivity data and a grouping of activity classes following the Pfam-A specifications of protein domains. This is valuable for data-focused approaches in drug discovery, for example when extrapolating potential targets of a small molecule with known activity against one or few targets, or in the assessment of a potential target for drug discovery or screening studies. PMID:23282026

From surprise to cognition: Some effects of the structure of C.A.L. simulation programs on the cognitive and scientific activities of young adults

NASA Astrophysics Data System (ADS)

Dicker, R. J.

The main objective of this thesis is to describe the effect on cognition of the structure of CAL simulation programs used, in science teaching. Four programs simulating a pond ecosystem were written so as to present a simulation model and to assist in cognition in different ways. Various clinically detailed methods of describing learning were developed and tried including concept maps which were found to be sammative rather than formative descriptions of learning, and to be ambiguous) and hierarchical structures (which were found to be difficult to produce). Fran these concept maps and hierarchical structures I developed my Interaction Model of Learning which can be used to describe the chronological events concerned with cognition. Using the Interaction Model, the nature of cognition and the effect that CAL program structure has on this process is described. Various scenarios are presented as a means of showing the possible effects of program structure on learning. Four forms of concept learning activity and their relationship to learning valid and alternative conceptions are described. The findings from the study are particularly related to the work of Driver (1983), Marton (1976) and Entwistle (1981).

Structural anatomy of a dismembered ophiolite suite from Gondwana: The Manamedu complex, Cauvery suture zone, southern India

NASA Astrophysics Data System (ADS)

Chetty, T. R. K.; Yellappa, T.; Nagesh, P.; Mohanty, D. P.; Venkatasivappa, V.; Santosh, M.; Tsunogae, T.

2011-08-01

Detailed geological and structural mapping of the Manamedu ophiolite complex (MOC), from the south-eastern part of the Cauvery suture zone (CSZ) within the Gondwana collisional suture in southern India reveals the anatomy of a dismembered ophiolite succession comprising pyroxenite actinolite-hornblendite, hornblendite, gabbro-norite, gabbro, anorthosite, amphibolite, plagiogranite, mafic dykes, and associated pelagic sediments such as chert-magnetite bands and carbonate horizons. The magmatic foliation trajectory map shows inward dipping foliations and a variety of fold structures. Structural cross-sections of the MOC reveal gentle inward dips with repetition and omission of different lithologies often marked by curvilinear hinge lines. The succession displays imbricate thrust sheets and slices of dismembered ophiolite suites distributed along several localities within the CSZ. The MOC can be interpreted as a deformed large duplex structure associated with south-verging back thrust system, consistent with crustal-scale 'flower structure'. The nature and distribution of ophiolitic rocks in the CSZ suggest supra-subduction zone setting associated with the lithospheric subduction of the Neoproterozoic Mozambique Ocean, followed by collision and obduction during the final stage of amalgamation of the Gondwana supercontinent in the end Precambrian.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grillot, L.R.; Anderton, P.W.; Haselton, T.M.

The Espoir oil field, located approximately 13 km offshore Ivory Coast, was discovered in 1980 by a joint venture comprised of Phillips Petroleum Company, AGIP, SEDCO Energy, and PETROCI. Following the discovery, a three-dimensional seismic survey was recorded by GSI in 1981-1982 to provide detailed seismic coverage of Espoir field and adjacent features. The seismic program consisted of 7700 line-km of data acquired in a single survey area that is located on the edge of the continental shelf and extends into deep water. In comparison with previous two-dimensional seismic surveys, the three-dimensional data provided several improvements in interpretation and mappingmore » including: (1) sharper definition of structural features, (2) reliable correlations of horizons and fault traces between closely spaced tracks, (3) detailed time contour maps from time-slice sections, and (4) improved velocity model for depth conversion. The improved mapping helped us identify additional well locations; the results of these wells compared favorably with the interpretation made prior to drilling.« less

USGS US topo maps for Alaska

USGS Publications Warehouse

Anderson, Becci; Fuller, Tracy

2014-01-01

In July 2013, the USGS National Geospatial Program began producing new topographic maps for Alaska, providing a new map series for the state known as US Topo. Prior to the start of US Topo map production in Alaska, the most detailed statewide USGS topographic maps were 15-minute 1:63,360-scale maps, with their original production often dating back nearly fifty years. The new 7.5-minute digital maps are created at 1:25,000 map scale, and show greatly increased topographic detail when compared to the older maps. The map scale and data specifications were selected based on significant outreach to various map user groups in Alaska. This multi-year mapping initiative will vastly enhance the base topographic maps for Alaska and is possible because of improvements to key digital map datasets in the state. The new maps and data are beneficial in high priority applications such as safety, planning, research and resource management. New mapping will support science applications throughout the state and provide updated maps for parks, recreation lands and villages.

Time-efficient high-resolution whole-brain three-dimensional macromolecular proton fraction mapping

PubMed Central

Yarnykh, Vasily L.

2015-01-01

Purpose Macromolecular proton fraction (MPF) mapping is a quantitative MRI method that reconstructs parametric maps of a relative amount of macromolecular protons causing the magnetization transfer (MT) effect and provides a biomarker of myelination in neural tissues. This study aimed to develop a high-resolution whole-brain MPF mapping technique utilizing a minimal possible number of source images for scan time reduction. Methods The described technique is based on replacement of an actually acquired reference image without MT saturation by a synthetic one reconstructed from R1 and proton density maps, thus requiring only three source images. This approach enabled whole-brain three-dimensional MPF mapping with isotropic 1.25×1.25×1.25 mm3 voxel size and scan time of 20 minutes. The synthetic reference method was validated against standard MPF mapping with acquired reference images based on data from 8 healthy subjects. Results Mean MPF values in segmented white and gray matter appeared in close agreement with no significant bias and small within-subject coefficients of variation (<2%). High-resolution MPF maps demonstrated sharp white-gray matter contrast and clear visualization of anatomical details including gray matter structures with high iron content. Conclusions Synthetic reference method improves resolution of MPF mapping and combines accurate MPF measurements with unique neuroanatomical contrast features. PMID:26102097

Perspectives on the strategic uses of concept mapping to address public health challenges.

PubMed

Anderson, Lynda A; Slonim, Amy

2017-02-01

We examine the adaptation of approaches used to plan and implement the steps of concept mapping to meet specialized needs and requirements in several public health projects. Seven published concept mapping projects are detailed to document how each of the phases were modified to meet the specific aims of each project. Concept mapping was found to be a useful tool to complement public health roles such as assessment, program development, and priority setting. The phases of concept mapping allow for a blending of diverse perspectives, which is critical to public health efforts. The adaptability of concept mapping permits the use of multiple modalities such as the addition of face-to-face brainstorming; use of qualitative methods, including structured interviews; and review and use of published literature and guidelines. Another positive aspect of concept mapping for public health practice is its ability to identify program elements, provide a visual map of generated ideas and their relationships to one another, and assist in identifying priorities. Our reflections on the adaptability should help inform another generation in designing concept mapping projects and related products that may benefit from unique adaptations and the rapidly expanding social media technology and platforms. Copyright © 2016 Elsevier Ltd. All rights reserved.

Structurally Controlled Geothermal Systems in the Central Cascades Arc-Backarc Regime, Oregon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wannamaker, Philip E.

The goal of this project has been to analyze available magnetotelluric (MT) geophysical surveys, structural geology based on mapping and LiDAR, and fluid geochemical data, to identify high-temperature fluid upwellings, critically stressed rock volumes, and other evidence of structurally-controlled geothermal resources. Data were to be integrated to create conceptual models of volcanic-hosted geothermal resources along the Central Cascades arc segment, especially in the vicinity of Mt. Jefferson to Three Sisters. LiDAR data sets available at Oregon State University (OSU) allowed detailed structural geology modeling through forest canopy. Copious spring and well fluid chemistries, including isotopes, were modeled using Geo-T andmore » TOUGHREACT software.« less

Preliminary Geologic Map of the Little Piute Mountains, California; a Digital Database

USGS Publications Warehouse

Howard, Keith A.; Dennis, Michael L.; Karlstrom, Karl; Phelps, Geoffrey A.

1997-01-01

Introduction The Little Piute Mountains in the eastern Mojave Desert expose a series of folds and thrust faults involving metamorphosed Paleozoic strata (Miller and others, 1982; Stone and others, 1983). Detailed mapping of these structures was undertaken to help elucidate regional Mesozoic structural evolution. Earlier geologic maps were prepared by Cooksley (1960a,b,c,d, generalized by Bishop, 1964) and Stone and others (1983). Deformed and metamorphosed Paleozoic and Triassic rocks form a stratal succession that was originally deposited in shallow seas on the North American craton. Based on lithologic sequence the units are correlated with unmetamorphosed equivalents 200 km to the northeast in the Grand Canyon, Arizona, and 35-50 km to the west in the Marble, Ship, and Providence Mountains, California (Stone and others, 1983). The Paleozoic sequence rests nonconformably on a heterogeneous basement of polydeformed Early Proterozoic gneiss (Miller and others, 1982; Wooden and Miller, 1990). Triassic and older rocks were deformed, metamorphosed to staurolite or andalusite grade, and intruded concordantly at their base by Late Cretaceous granodiorite (Miller and others, 1982).

Preliminary Geologic Map of the the Little Piute Mountains, San Bernardino County, California

USGS Publications Warehouse

Howard, Keith A.; Dennis, Michael L.; Karlstrom, Karl E.; Phelps, Geoffrey A.

1995-01-01

Introduction The Little Piute Mountains in the eastern Mojave Desert expose a series of folds and thrust faults involving metamorphosed Paleozoic strata (Miller and others, 1982; Stone and others, 1983). Detailed mapping of these structures was undertaken to help elucidate regional Mesozoic structural evolution. Earlier geologic maps were prepared by Cooksley (1960a,b,c,d, generalized by Bishop, 1964) and Stone and others (1983). Deformed and metamorphosed Paleozoic and Triassic rocks form a stratal succession that was originally deposited in shallow seas on the North American craton. Based on lithologic sequence the units are correlated with unmetamorphosed equivalents 200 km to the northeast in the Grand Canyon, Arizona, and 35-50 km to the west in the Marble, Ship, and Providence Mountains, California (Stone and others, 1983). The Paleozoic sequence rests nonconformably on a heterogeneous basement of polydeformed Early Proterozoic gneiss (Miller and others, 1982; Wooden and Miller, 1990). Triassic and older rocks were deformed, metamorphosed to staurolite or andalusite grade, and intruded concordantly at their base by Late Cretaceous granodiorite (Miller and others, 1982).

Novel Passive Clearing Methods for the Rapid Production of Optical Transparency in Whole CNS Tissue.

PubMed

Woo, Jiwon; Lee, Eunice Yoojin; Park, Hyo-Suk; Park, Jeong Yoon; Cho, Yong Eun

2018-05-08

Since the development of CLARITY, a bioelectrochemical clearing technique that allows for three-dimensional phenotype mapping within transparent tissues, a multitude of novel clearing methodologies including CUBIC (clear, unobstructed brain imaging cocktails and computational analysis), SWITCH (system-wide control of interaction time and kinetics of chemicals), MAP (magnified analysis of the proteome), and PACT (passive clarity technique), have been established to further expand the existing toolkit for the microscopic analysis of biological tissues. The present study aims to improve upon and optimize the original PACT procedure for an array of intact rodent tissues, including the whole central nervous system (CNS), kidneys, spleen, and whole mouse embryos. Termed psPACT (process-separate PACT) and mPACT (modified PACT), these novel techniques provide highly efficacious means of mapping cell circuitry and visualizing subcellular structures in intact normal and pathological tissues. In the following protocol, we provide a detailed, step-by-step outline on how to achieve maximal tissue clearance with minimal invasion of their structural integrity via psPACT and mPACT.

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast

PubMed Central

Liachko, Ivan; Youngblood, Rachel A.; Keich, Uri; Dunham, Maitreya J.

2013-01-01

DNA replication origins are necessary for the duplication of genomes. In addition, plasmid-based expression systems require DNA replication origins to maintain plasmids efficiently. The yeast autonomously replicating sequence (ARS) assay has been a valuable tool in dissecting replication origin structure and function. However, the dearth of information on origins in diverse yeasts limits the availability of efficient replication origin modules to only a handful of species and restricts our understanding of origin function and evolution. To enable rapid study of origins, we have developed a sequencing-based suite of methods for comprehensively mapping and characterizing ARSs within a yeast genome. Our approach finely maps genomic inserts capable of supporting plasmid replication and uses massively parallel deep mutational scanning to define molecular determinants of ARS function with single-nucleotide resolution. In addition to providing unprecedented detail into origin structure, our data have allowed us to design short, synthetic DNA sequences that retain maximal ARS function. These methods can be readily applied to understand and modulate ARS function in diverse systems. PMID:23241746

The function of neurocognitive networks. Comment on “Understanding brain networks and brain organization” by Pessoa

NASA Astrophysics Data System (ADS)

Bressler, Steven L.

2014-09-01

Pessoa [5] has performed a valuable service by reviewing the extant literature on brain networks and making a number of interesting proposals about their cognitive function. The term function is at the core of understanding the brain networks of cognition, or neurocognitive networks (NCNs) [1]. The great Russian neuropsychologist, Luria [4], defined brain function as the common task executed by a distributed brain network of complex dynamic structures united by the demands of cognition. Casting Luria in a modern light, we can say that function emerges from the interactions of brain regions in NCNs as they dynamically self-organize according to cognitive demands. Pessoa rightly details the mapping between brain function and structure, emphasizing both its pluripotency (one structure having multiple functions) and degeneracy (many structures having the same function). However, he fails to consider the potential importance of a one-to-one mapping between NCNs and function. If NCNs are uniquely composed of specific collections of brain areas, then each NCN has a unique function determined by that composition.

Synchronization invariance under network structural transformations

NASA Astrophysics Data System (ADS)

Arola-Fernández, Lluís; Díaz-Guilera, Albert; Arenas, Alex

2018-06-01

Synchronization processes are ubiquitous despite the many connectivity patterns that complex systems can show. Usually, the emergence of synchrony is a macroscopic observable; however, the microscopic details of the system, as, e.g., the underlying network of interactions, is many times partially or totally unknown. We already know that different interaction structures can give rise to a common functionality, understood as a common macroscopic observable. Building upon this fact, here we propose network transformations that keep the collective behavior of a large system of Kuramoto oscillators invariant. We derive a method based on information theory principles, that allows us to adjust the weights of the structural interactions to map random homogeneous in-degree networks into random heterogeneous networks and vice versa, keeping synchronization values invariant. The results of the proposed transformations reveal an interesting principle; heterogeneous networks can be mapped to homogeneous ones with local information, but the reverse process needs to exploit higher-order information. The formalism provides analytical insight to tackle real complex scenarios when dealing with uncertainty in the measurements of the underlying connectivity structure.

Free energy landscapes of a highly structured β-hairpin peptide and its single mutant

NASA Astrophysics Data System (ADS)

Kim, Eunae; Yang, Changwon; Jang, Soonmin; Pak, Youngshang

2008-10-01

We investigated the free energy landscapes of a highly structured β-hairpin peptide (MBH12) and a less structured peptide with a single mutation of Tyr6 to Asp6 (MBH10). For the free energy mapping, starting from an extended conformation, the replica exchange molecular dynamic simulations for two β-hairpins were performed using a modified version of an all-atom force field employing an implicit solvation (param99MOD5/GBSA). With the present simulation approach, we demonstrated that detailed stability changes associated with the sequence modification from MBH12 to MBH10 are quantitatively well predicted at the all-atom level.

Ab initio multiple cloning simulations of pyrrole photodissociation: TKER spectra and velocity map imaging

DOE PAGES

Makhov, Dmitry V.; Saita, Kenichiro; Martinez, Todd J.; ...

2014-12-11

In this study, we report a detailed computational simulation of the photodissociation of pyrrole using the ab initio Multiple Cloning (AIMC) method implemented within MOLPRO. The efficiency of the AIMC implementation, employing train basis sets, linear approximation for matrix elements, and Ehrenfest configuration cloning, allows us to accumulate significant statistics. We calculate and analyze the total kinetic energy release (TKER) spectrum and Velocity Map Imaging (VMI) of pyrrole and compare the results directly with experimental measurements. Both the TKER spectrum and the structure of the velocity map image (VMI) are well reproduced. Previously, it has been assumed that the isotropicmore » component of the VMI arises from long time statistical dissociation. Instead, our simulations suggest that ultrafast dynamics contributes significantly to both low and high energy portions of the TKER spectrum.« less

Ab initio multiple cloning simulations of pyrrole photodissociation: TKER spectra and velocity map imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makhov, Dmitry V.; Saita, Kenichiro; Martinez, Todd J.

In this study, we report a detailed computational simulation of the photodissociation of pyrrole using the ab initio Multiple Cloning (AIMC) method implemented within MOLPRO. The efficiency of the AIMC implementation, employing train basis sets, linear approximation for matrix elements, and Ehrenfest configuration cloning, allows us to accumulate significant statistics. We calculate and analyze the total kinetic energy release (TKER) spectrum and Velocity Map Imaging (VMI) of pyrrole and compare the results directly with experimental measurements. Both the TKER spectrum and the structure of the velocity map image (VMI) are well reproduced. Previously, it has been assumed that the isotropicmore » component of the VMI arises from long time statistical dissociation. Instead, our simulations suggest that ultrafast dynamics contributes significantly to both low and high energy portions of the TKER spectrum.« less

Development of a new British Geologcial Survey(BGS) Map Series: Seabed Geomorphology

NASA Astrophysics Data System (ADS)

Dove, Dayton

2015-04-01

BGS scientists are developing a new offshore map series, Seabed Geomorphology (1:50k), to join the existing 1:250k 'Sea Bed Sediments', 'Quaternary Geology', and 'Solid Geology' map series. The increasing availability of extensive high-resolution swath bathymetry data (e.g. MCA's Civil Hydrography Programme) provides an unprecedented opportunity to characterize the processes which formed, and actively govern the physical seabed environment. Mapping seabed geomorphology is an effective means to describe individual, or groups of features whose form and other physical attributes (e.g. symmetry) may be used to distinguish feature origin. Swath bathymetry also provides added and renewed value to other data types (e.g. grab samples, legacy seismic data). In such cases the geomorphic evidence may be expanded to make inferences on the evolution of seabed features as well as their association with the underlying geology and other environmental variables/events over multiple timescales. Classifying seabed geomorphology is not particularly innovative or groundbreaking. Terrestrial geomorphology is of course a well established field of science, and within the marine environment for example, mapping submarine glacial landforms has probably become the most reliable method to reconstruct the extent and dynamics of past ice-sheets. What is novel here, and we believe useful/necessary for a survey organization, is to standardise the geomorphological classification scheme such that it is applicable to multiple and diverse environments. The classification scheme should be sufficiently detailed and interpretive to be informative, but not so detailed that we over-interpret or become mired in disputed feature designations or definitions. We plan to present the maps at 1:50k scale with the intention that these maps will be 'enabling' resources for research, educational, commercial, and policy purposes, much like the existing 1:250k map series. We welcome feedback on the structure and content of the proposed classification scheme, as well as the anticipated value to respective user communities.

Preliminary Aeromagnetic Map of Joshua Tree National Park and Vicinity, Southern California

USGS Publications Warehouse

Langenheim, V.E.; Hill, P.L.

2010-01-01

This aeromagnetic map of Joshua Tree National Park and vicinity is intended to promote further understanding of the geology and structure in the region by serving as a basis for geophysical interpretations and by supporting geological mapping, water-resource investigations, and various topical studies. Local spatial variations in the Earth's magnetic field (evident as anomalies on aeromagnetic maps) reflect the distribution of magnetic minerals, primarily magnetite, in the underlying rocks. In many cases the volume content of magnetic minerals can be related to rock type, and abrupt spatial changes in the amount of magnetic minerals commonly mark lithologic or structural boundaries. Bodies of mafic and ultramafic rocks tend to produce the most intense magnetic anomalies, but such generalizations must be applied with caution because rocks with more felsic compositions, or even some sedimentary units, also can cause measurable magnetic anomalies. The database includes two ASCII files containing new aeromagnetic data and two ASCII files with point locations of the local maximum horizontal gradient derived from the aeromagnetic data. This metadata file describes the horizontal gradient locations derived from new and existing aeromagnetic data. This aeromagnetic map identifies magnetic features as a basis for geophysical interpretations; the gradients help define the edges of magnetic sources. This database updates geophysical information originally presented in smaller-scale formats and includes detailed aeromagnetic data collected by EON Geosciences, Inc.

Application of Research on the Metallogenic Background in the Assessment of Mineral Resources Potentiality

NASA Astrophysics Data System (ADS)

Jia, D.; Feng, Y.; Liu, J.; Yao, X.; Zhang, Z.; Ye, T.

2017-12-01

1. Working BackgroundCurrent Status of Geological Prospecting: Detecting boundaries and bottoms, making ore search nearby; Seeing the stars, not seeing the Moon; Deep prospecting, undesirable results. The reasons of these problems are the regional metallogenic backgroud unclear and the metallogenic backgroud of the exploration regions unknown. Accordingly, Development and Research Center, CGS organized a geological setting research, in detail investigate metallogenic geological features and acquire mineralization information. 2. Technical SchemeCore research content is prediction elements of Metallogenic Structure. Adopt unified technical requirements from top to bottom, and technical route from bottom to top; Divide elements of mineral forecast and characteristics of geological structure into five elements for research and expression; Make full use of geophysical, geochemical and remote sensing inferences for the interpretation of macro information. After eight years the great project was completed. 3. Main AchievementsInnovation of basic maps compilation content of geological background, reinforce of geological structure data base of potentiality valuation. Preparation of geotectonic facies maps in different scales and professions, providing brand-new geologic background for potentiality assessment, promoting Chinese geotectonic research to the new height. Preparation of 3,375 geological structure thematic base maps of detecting working area in 6 kinds of prediction methods, providing base working maps, rock assemblage, structure of the protolith of geologic body / mineralization / ore controlling for mineral prediction of 25 ores. Enrichment and development of geotectonic facies analysis method, establishment of metallogenic background research thoughts and approach system for assessment of national mineral resources potentiality for the first time. 4. Application EffectOrientation——More and better results with less effort. Positioning——Have a definite object in view. Heart calm down——Confidence.

Pluto in Extended Color

NASA Image and Video Library

2015-09-24

This cylindrical projection map of Pluto, in enhanced, extended color, is the most detailed color map of Pluto ever made by NASA New Horizons. It uses recently returned color imagery from the New Horizons Ralph camera, which is draped onto a base map of images from the NASA's spacecraft's Long Range Reconnaissance Imager (LORRI). The map can be zoomed in to reveal exquisite detail with high scientific value. Color variations have been enhanced to bring out subtle differences. Colors used in this map are the blue, red, and near-infrared filter channels of the Ralph instrument. http://photojournal.jpl.nasa.gov/catalog/PIA19956

Coastal system mapping: a new approach to formalising and conceptualising the connectivity of large-scale coastal systems

NASA Astrophysics Data System (ADS)

French, J.; Burningham, H.; Whitehouse, R.

2010-12-01

The concept of the coastal sediment cell has proved invaluable as a basis for estimating sediment budgets and as a framework for coastal management. However, whilst coastal sediment cells are readily identified on compartmentalised coastlines dominated by beach-grade material, the cell concept is less suited to handling broader linkages between estuarine, coastal and offshore systems, and for incorporating longer-range suspended sediment transport. We present a new approach to the conceptualisation of large-scale coastal geomorphic systems based on a hierarchical classification of component landforms and management interventions and mapping of the interactions between them. Coastal system mapping is founded on a classification that identifies high-level landform features, low-level landform elements and engineering interventions. Geomorphic features define the large-scale organisation of a system and include landforms that define gross coastal configuration (e.g. headland, bay) as well as fluvial, estuarine and offshore sub-systems that exchange sediment with and influence the open coast. Detailed system structure is mapped out with reference to a larger set of geomorphic elements (e.g. cliff, dune, beach ridge). Element-element interactions define cross-shore linkages (conceptualised as hinterland, backshore and foreshore zones) and alongshore system structure. Both structural and non-structural engineering interventions are also represented at this level. Element-level mapping is rationalised to represent alongshore variation using as few elements as possible. System linkages include both sediment transfer pathways and influences not associated with direct mass transfer (e.g. effect of a jetty at an inlet). A formal procedure for capturing and graphically representing coastal system structure has been developed around free concept mapping software, CmapTools (http://cmap.ihmc.us). Appended meta-data allow geographic coordinates, data, images and literature pertaining to specific locations to be embedded in system maps. Exported maps can be analysed separately to quantify abundance of system components and their scales of interaction. Our approach is demonstrated for different scales and geomorphic contexts in the UK, including Alnmouth Bay (NE England; 15km), Lowestoft to Felixstowe (E England; 73km) and Cardigan Bay (Wales; 267km). Aerial imagery provides the primary basis for identifying features and elements and likely modes of interaction. This interpretation is then checked against relevant research literature and site data. Coastal system mapping is a kind of knowledge formalisation that generalises disparate sources of information (‘plain data’) into usable knowledge. Consensus-derived system maps are highly effective as a catalyst for structured discussion of geomorphic system behaviour and its implications for coastal management. They also function as a repository for results from quantitative analyses and modelling.

Litho-structural analysis of eastern part of Ilesha schist belt, Southwestern Nigeria

NASA Astrophysics Data System (ADS)

Fagbohun, Babatunde Joseph; Adeoti, Blessing; Aladejana, Olabanji Odunayo

2017-09-01

The Ilesha schist belt is an excellent example of high strain shear belt within basement complex of southwestern Nigeria which is part of the larger West African Shield. The Ilesha schist belt is characterised by metasediment-metavolcanic, migmatite-gneiss and older granite rocks and the occurrence of a Shear zone which has been traced to and correlated with the central Hoggar Neoproterozoic shear zone as part of the Trans-Saharan Belt. Although the area is interesting in terms of geologic-tectonic setting, however, detailed geological assessment and structural interpretation of features in this area is lacking due accessibility problem. For these reasons we applied principal component analysis (PCA) and band ratio (BR) techniques on Landsat 8 OLI data for lithological discrimination while for structural interpretation, filtering techniques of edge enhancement and edge detection was applied on digital elevation model (DEM) acquired by shuttle radar topographic mission (SRTM) sensor. The PCA outperform BR for discrimination between quartzite and granite which are the most exposed rock units in the area. For structural interpretation, DEM was used to generate shaded relief model and edge maps which enable detailed structural interpretation. Geologic fieldwork was further conducted to validate structures and units identified from image processing. Based image interpretation, three deformation events were identified. The first event (D1) which is majorly a ductile deformation produced foliations and folds whose axial planes trend in NNE-SSW. The second event (D2) resulted in reactivation and rotation of the D1 structures particularly the folds in the NE-SW. The third event (D3) produced a transgressive deformation starting with the ductile deformation resulting in the development of sigmoidal structures oriented in NE-SW to E-W direction and the brittle deformation occurring at later stages producing fractures oriented in the E-W to NE-SW directions. These results have important implications in terms of regional tectonics and geological mapping as well as in land-use planning and other areas such as hydrogeology or geotechnics.

Use of remote sensing technology for inventorying and planning utilization of land resources in South Dakota

NASA Technical Reports Server (NTRS)

1975-01-01

A project was undertaken in Meade County, South Dakota to provide (1) a general county-wide resource survey of land use and soils and (2) a detailed survey of land use for the environmentally sensitive area adjacent to the Black Hills. Imagery from LANDSAT-1 was visually interpreted to provide land use information and a general soils map. A detailed land use map for the Black Hills area was interpreted from RB-57 photographs and interpretations of soil characteristics were input into a computer data base and mapped. The detailed land use data were then used in conjunction with soil maps to provide information for the development of zoning ordinance maps and other land use planning in the Black Hills area. The use of photographs as base maps was also demonstrated. In addition, the use of airborne thermography to locate spoilage areas in sugar beet piles and to determine the apparent temperature of rooftops was evaluated.

Photogrammetric portrayal of Mars topography.

USGS Publications Warehouse

Wu, S.S.C.

1979-01-01

Special photogrammetric techniques have been developed to portray Mars topography, using Mariner and Viking imaging and nonimaging topographic information and earth-based radar data. Topography is represented by the compilation of maps at three scales: global, intermediate, and very large scale. The global map is a synthesis of topographic information obtained from Mariner 9 and earth-based radar, compiled at a scale of 1:25,000,000 with a contour interval of 1 km; it gives a broad quantitative view of the planet. At intermediate scales, Viking Orbiter photographs of various resolutions are used to compile detailed contour maps of a broad spectrum of prominent geologic features; a contour interval as small as 20 m has been obtained from very high resolution orbital photography. Imagery from the Viking lander facsimile cameras permits construction of detailed, very large scale (1:10) topographic maps of the terrain surrounding the two landers; these maps have a contour interval of 1 cm. This paper presents several new detailed topographic maps of Mars.-Author

Photogrammetric portrayal of Mars topography

NASA Technical Reports Server (NTRS)

Wu, S. S. C.

1979-01-01

Special photogrammetric techniques have been developed to portray Mars topography, using Mariner and Viking imaging and nonimaging topographic information and earth-based radar data. Topography is represented by the compilation of maps at three scales: global, intermediate, and very large scale. The global map is a synthesis of topographic information obtained from Mariner 9 and earth-based radar, compiled at a scale of 1:25,000,000 with a contour interval of 1 km; it gives a broad quantitative view of the planet. At intermediate scales, Viking Orbiter photographs of various resolutions are used to compile detailed contour maps of a broad spectrum of prominent geologic features; a contour interval as small as 20 m has been obtained from very high resolution orbital photography. Imagery from the Viking lander facsimile cameras permits construction of detailed, very large scale (1:10) topographic maps of the terrain surrounding the two landers; these maps have a contour interval of 1 cm. This paper presents several new detailed topographic maps of Mars.

Mars Global Geologic Mapping: Amazonian Results

NASA Technical Reports Server (NTRS)

Tanaka, K. L.; Dohm, J. M.; Irwin, R.; Kolb, E. J.; Skinner, J. A., Jr.; Hare, T. M.

2008-01-01

We are in the second year of a five-year effort to map the geology of Mars using mainly Mars Global Surveyor, Mars Express, and Mars Odyssey imaging and altimetry datasets. Previously, we have reported on details of project management, mapping datasets (local and regional), initial and anticipated mapping approaches, and tactics of map unit delineation and description [1-2]. For example, we have seen how the multiple types and huge quantity of image data as well as more accurate and detailed altimetry data now available allow for broader and deeper geologic perspectives, based largely on improved landform perception, characterization, and analysis. Here, we describe early mapping results, which include updating of previous northern plains mapping [3], including delineation of mainly Amazonian units and regional fault mapping, as well as other advances.

The snake geothermal drilling project. Innovative approaches to geothermal exploration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shervais, John W.; Evans, James P.; Liberty, Lee M.

2014-02-21

The goal of our project was to test innovative technologies using existing and new data, and to ground-truth these technologies using slim-hole core technology. The slim-hole core allowed us to understand subsurface stratigraphy and alteration in detail, and to correlate lithologies observed in core with surface based geophysical studies. Compiled data included geologic maps, volcanic vent distribution, structural maps, existing well logs and temperature gradient logs, groundwater temperatures, and geophysical surveys (resistivity, magnetics, gravity). New data included high-resolution gravity and magnetic surveys, high-resolution seismic surveys, three slimhole test wells, borehole wireline logs, lithology logs, water chemistry, alteration mineralogy, fracture distribution,more » and new thermal gradient measurements.« less

Precise mapping of the magnetic field in the CMS barrel yoke using cosmic rays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chatrchyan, S.; et al.,

2010-03-01

The CMS detector is designed around a large 4 T superconducting solenoid, enclosed in a 12000-tonne steel return yoke. A detailed map of the magnetic field is required for the accurate simulation and reconstruction of physics events in the CMS detector, not only in the inner tracking region inside the solenoid but also in the large and complex structure of the steel yoke, which is instrumented with muon chambers. Using a large sample of cosmic muon events collected by CMS in 2008, the field in the steel of the barrel yoke has been determined with a precision of 3 tomore » 8% depending on the location.« less

The wildland-urban interface raster dataset of Catalonia.

PubMed

Alcasena, Fermín J; Evers, Cody R; Vega-Garcia, Cristina

2018-04-01

We provide the wildland urban interface (WUI) map of the autonomous community of Catalonia (Northeastern Spain). The map encompasses an area of some 3.21 million ha and is presented as a 150-m resolution raster dataset. Individual housing location, structure density and vegetation cover data were used to spatially assess in detail the interface, intermix and dispersed rural WUI communities with a geographical information system. Most WUI areas concentrate in the coastal belt where suburban sprawl has occurred nearby or within unmanaged forests. This geospatial information data provides an approximation of residential housing potential for loss given a wildfire, and represents a valuable contribution to assist landscape and urban planning in the region.

The Orion Nebula in the Far-Infrared: high-J CO and fine-structure lines mapped by FIFI-LS/SOFIA

NASA Astrophysics Data System (ADS)

Klein, Randolf; Looney, Leslie; Cox, Erin; Fischer, Christian; Iserlohe, Christof; Krabbe, Alfred

2015-08-01

The Orion Nebula is the closest massive star forming region allowing us to study the physical conditions in such a region with high spatial resolution. We used the far infrared integral-field spectrometer, FIFI-LS, on-board the airborne observatory SOFIA to study the atomic and molecular gas in the Orion Nebula at medium spectral resolution.The large maps obtained with FIFI-LS cover the nebula from the BN/KL-object to the bar in several fine structure lines. These spectral maps are the largest and highest spatially resolved to date. They allow us to study the conditions of the photon-dominated region and the interface to the molecular cloud with unprecedented detail.Another investigation targeted the molecular gas in the BN/KL region of the Orion Nebula, which is stirred up by a violent explosion about 500 years ago. The explosion drives a wide angled molecular outflow. We present maps of several high-J CO observations (J in the range of 10 to 30), allowing us to analyse of the heated molecular gas.The observations were taken during the commissioning of FIFI-LS last year and as recent as this March. The results are still preliminary as the data reduction and calibration is still under development.

Mars Global Geologic Mapping: About Half Way Done

NASA Technical Reports Server (NTRS)

Tanaka, K. L.; Dohm, J. M.; Irwin, R.; Kolb, E. J.; Skinner, J. A., Jr.; Hare, T. M.

2009-01-01

We are in the third year of a five-year effort to map the geology of Mars using mainly Mars Global Surveyor, Mars Express, and Mars Odyssey imaging and altimetry datasets. Previously, we have reported on details of project management, mapping datasets (local and regional), initial and anticipated mapping approaches, and tactics of map unit delineation and description [1-2]. For example, we have seen how the multiple types and huge quantity of image data as well as more accurate and detailed altimetry data now available allow for broader and deeper geologic perspectives, based largely on improved landform perception, characterization, and analysis. Here, we describe mapping and unit delineation results thus far, a new unit identified in the northern plains, and remaining steps to complete the map.

Extracting temporal and spatial information from remotely sensed data for mapping wildlife habitat: Tucson

USGS Publications Warehouse

Wallace, Cynthia S.A.; Advised by Marsh, Stuart E.

2002-01-01

The research accomplished in this dissertation used both mathematical and statistical techniques to extract and evaluate measures of landscape temporal dynamics and spatial structure from remotely sensed data for the purpose of mapping wildlife habitat. By coupling the landscape measures gleaned from the remotely sensed data with various sets of animal sightings and population data, effective models of habitat preference were created.Measures of temporal dynamics of vegetation greenness as measured by National Oceanographic and Atmospheric Administration’s Advanced Very High Resolution Radiometer (AVHRR) satellite were used to effectively characterize and map season specific habitat of the Sonoran pronghorn antelope, as well as produce preliminary models of potential yellow-billed cuckoo habitat in Arizona. Various measures that capture different aspects of the temporal dynamics of the landscape were derived from AVHRR Normalized Difference Vegetation Index composite data using three main classes of calculations: basic statistics, standardized principal components analysis, and Fourier analysis. Pronghorn habitat models based on the AVHRR measures correspond visually and statistically to GIS-based models produced using data that represent detailed knowledge of ground-condition.Measures of temporal dynamics also revealed statistically significant correlations with annual estimates of elk population in selected Arizona Game Management Units, suggesting elk respond to regional environmental changes that can be measured using satellite data. Such relationships, once verified and established, can be used to help indirectly monitor the population.Measures of landscape spatial structure derived from IKONOS high spatial resolution (1-m) satellite data using geostatistics effectively map details of Sonoran pronghorn antelope habitat. Local estimates of the nugget, sill, and range variogram parameters calculated within 25 x 25-meter image windows describe the spatial autocorrelation of the image, permitting classification of all pixels into coherent units whose signature graphs exhibit a classic variogram shape. The variogram parameters captured in these signatures have been shown in previous studies to discriminate between different species-specific vegetation associations.The synoptic view of the landscape provided by satellite data can inform resource management efforts. The ability to characterize the spatial structure and temporal dynamics of habitat using repeatable remote sensing data allows closer monitoring of the relationship between a species and its landscape.

Magnetic mapping of Spanish Canary archipelago [ZEEE project

NASA Astrophysics Data System (ADS)

Catalan, M.; Martin, J.; Marin, J. A.; Agudo, L. M.

2003-04-01

The Spanish Exclusive Economic Zone [ZEEE] Project constitutes the most intensive mapping to date of the sea floor off Spain's coast. This extensive geophysical survey is being undertaken by a Spanish government team. The first phase [1995-1997] concentrated its efforts in the Balearic sea. The geomagnetic data acquired for this area, has already being reduced and stored as a data base, and six scalar magnetic anomaly maps have been produced at a scale of 1:200.000, and another that cover the whole zone at a scale of 1:500.000. Since 1998, the Project has systematically surveyed the Canary archipelago, ending on October 2002. This group of islands, located off the West African Continental Margin, conform an intraplate volcanic archipelago which reflects a magmatic story that started probably at Tertiary. This Communication describes its main technical details, discusses the scalar magnetic map and presents a regional analysis of the Canary islands magnetic picture, trying to identify the different intra-crustal structures which generate the anomalies.

Fine Structure Genetic and Physical Map of the Gene 3 to 10 Region of the Bacteriophage P22 Chromosome

PubMed Central

Casjens, S.; Eppler, K.; Sampson, L.; Parr, R.; Wyckoff, E.

1991-01-01

The mechanism by which dsDNA is packaged by viruses is not yet understood in any system. Bacteriophage P22 has been a productive system in which to study the molecular genetics of virus particle assembly and DNA packaging. Only five phage encoded proteins, the products of genes 3, 2, 1, 8 and 5, are required for packaging the virus chromosome inside the coat protein shell. We report here the construction of a detailed genetic and physical map of these genes, the neighboring gene 4 and a portion of gene 10, in which 289 conditional lethal amber, opal, temperature sensitive and cold sensitive mutations are mapped into 44 small (several hundred base pair) intervals of known sequence. Knowledge of missense mutant phenotypes and information on the location of these mutations allows us to begin the assignment of partial protein functions to portions of these genes. The map and mapping strains will be of use in the further genetic dissection of the P22 DNA packaging and prohead assembly processes. PMID:2029965

MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.

PubMed

Zhang, Chengxin; Zheng, Wei; Freddolino, Peter L; Zhang, Yang

2018-03-10

Homology-based transferal remains the major approach to computational protein function annotations, but it becomes increasingly unreliable when the sequence identity between query and template decreases below 30%. We propose a novel pipeline, MetaGO, to deduce Gene Ontology attributes of proteins by combining sequence homology-based annotation with low-resolution structure prediction and comparison, and partner's homology-based protein-protein network mapping. The pipeline was tested on a large-scale set of 1000 non-redundant proteins from the CAFA3 experiment. Under the stringent benchmark conditions where templates with >30% sequence identity to the query are excluded, MetaGO achieves average F-measures of 0.487, 0.408, and 0.598, for Molecular Function, Biological Process, and Cellular Component, respectively, which are significantly higher than those achieved by other state-of-the-art function annotations methods. Detailed data analysis shows that the major advantage of the MetaGO lies in the new functional homolog detections from partner's homology-based network mapping and structure-based local and global structure alignments, the confidence scores of which can be optimally combined through logistic regression. These data demonstrate the power of using a hybrid model incorporating protein structure and interaction networks to deduce new functional insights beyond traditional sequence homology-based referrals, especially for proteins that lack homologous function templates. The MetaGO pipeline is available at http://zhanglab.ccmb.med.umich.edu/MetaGO/. Copyright © 2018. Published by Elsevier Ltd.

Detailed Sections from Auger Holes in the Roanoke Rapids 1:100,000 Map Sheet, North Carolina

USGS Publications Warehouse

Weems, Robert E.; Lewis, William C.

2007-01-01

Introduction The Roanoke Rapids 1:100,000 map sheet straddles the Coastal Plain / Piedmont boundary in northernmost North Carolina (Figure 1). Sediments of the Coastal Plain underlie the eastern three-fourths of this area, and patchy outliers of Coastal Plain units cap many of the higher hills in the western one-fourth of the area. Sediments dip gently to the east and reach a maximum known thickness in the extreme southeast part of the map area (Figure 2). The gentle eastward dip is disrupted in several areas due to faulting. The U.S. Geological Survey recovered one core and augered 97 research test holes within the Roanoke Rapids 1:100,000 map sheet to supplement sparse outcrop data available from the Coastal Plain portion of the map area. The recovered sediments were studied and data from them recorded to determine the lithologic characteristics, spatial distribution, and temporal framework of the represented Coastal Plain stratigraphic units. These test holes were critical for accurately determining the distribution of major geologic units and the position of unit boundaries that will be shown on the forthcoming Roanoke Rapids geologic map, but much of the detailed subsurface data cannot be shown readily through this map product. Therefore, detailed descriptions have been collected in this open-file report for geologists, hydrologists, engineers, and community planners to provide a detailed shallow-subsurface stratigraphic framework for much of the Roanoke Rapids map region.

Geophysically inferred structural and lithologic map of the precambrian basement in the Joplin 1 degree by 2 degrees Quadrangle, Kansas and Missouri

USGS Publications Warehouse

McCafferty, Anne E.; Cordell, Lindrith E.

1992-01-01

This report is an analysis of regional gravity and aeromagnetic data that was carried out as part of a Conterminuous United States Mineral Assessment Program (CUSMAP) study of the Joplin 1° X 2° quadrangle, Kansas and Missouri. It is one in a series of reports representing a cooperative effort between the U.S. Geological Survey, Kansas Geological Survey, and Missouri Department of Natural Resources, Division of Geology and Land Survey. The work presented here is part of a larger project whose goal is to assess the mineral resource potential of the Paleozoic sedimentary section and crystalline basement within the quadrangle. Reports discussing geochemical, geological, and various other aspects of the study area are included in this Miscellaneous Field Studies Map series as MF-2125-A through MF-2125-E. Geophysical interpretation of Precambrian crystalline basement lithology and structure is the focus of this report. The study of the crystalline basement is complicated by the lack of exposures due to the presence of a thick sequence of Phanerozoic sedimentary cover. In areas where there are no outcrops, the geologist must turn to other indirect methods to assist in an understanding of the basement. Previous investigations of the buried basement in this region used available drill hole data, isotope age information, and regional geophysical data (Sims, 1990; Denison and others, 1984; Bickford and others, 1986). These studies were regional in scope and were presented at state and multistate scales. The work documented here used recently collected detailed gravity and aeromagnetic data to enhance the regional geologic knowledge of the area. Terrace-density and terrace-magnetization maps were calculated from the gravity and aeromagnetic data, leading directly to inferred physical-property (density and magnetization) maps. Once these maps were produced, the known geology and drill-hole data were reconciled with the physical-property maps to form a refined structural and lithologic map of the crystalline basement.

Neural network analysis for geological interpretation of tomographic images beneath the Japan Islands

NASA Astrophysics Data System (ADS)

Kuwatani, T.; Toriumi, M.

2009-12-01

Recent advances in methodologies of geophysical observations, such as seismic tomography, seismic reflection method and geomagnetic method, provide us a large amount and a wide variety of data for physical properties of a crust and upper mantle (e.g. Matsubara et al. (2008)). However, it has still been difficult to specify a rock type and its physical conditions, mainly because (1) available data usually have a lot of error and uncertainty, and (2) physical properties of rocks are greatly affected by fluid and microstructures. The objective interpretation and quantitative evaluation for lithology and fluid-related structure require the statistical analyses of integrated geophysical and geological data. Self-Organizing Maps (SOMs) are unsupervised artificial neural networks that map the input space into clusters in a topological form whose organization is related to trends in the input data (Kohonen 2001). SOMs are powerful neural network techniques to classify and interpret multiattribute data sets. Results of SOM classifications can be represented as 2D images, called feature maps which illustrate the complexity and interrelationships among input data sets. Recently, some works have used SOM in order to interpret multidimensional, non-linear, and highly noised geophysical data for purposes of geological prediction (e.g. Klose 2006; Tselentis et al. 2007; Bauer et al. 2008). This paper describes the application of SOM to the 3D velocity structure beneath the whole Japan islands (e.g. Matsubara et al. 2008). From the obtained feature maps, we can specify the lithology and qualitatively evaluate the effect of fluid-related structures. Moreover, re-projection of feature maps onto the 3D velocity structures resulted in detailed images of the structures within the plates. The Pacific plate and the Philippine Sea plate subducting beneath the Eurasian plate can be imaged more clearly than the original P- and S-wave velocity structures. In order to understand more precise prediction of lithology and its structure, we will use the additional input data sets, such as tomographic images of random velocity fluctuation (Takahashi et al. 2009) and b-value mapping data. Additionally, different kinds of data sets, including the experimental and petrological results (e.g. Christensen 1991; Hacker et al. 2003) can be applied to our analyses.

Neutron diffraction of acetazolamide-bound human carbonic anhydrase II reveals atomic details of drug binding

PubMed Central

Fisher, S. Zoë; Aggarwal, Mayank; Kovalevsky, Andrey Y.; Silverman, David N.; McKenna, Robert

2012-01-01

Carbonic anhydrases (CAs) catalyze the hydration of CO2 forming HCO3− and a proton, an important reaction for many physiological processes including respiration, fluid secretion, and pH regulation. As such, CA isoforms are prominent clinical targets for treating various diseases. The clinically used acetazolamide (AZM) is a sulfonamide that binds with high affinity to human CA isoform II (HCA II). There are several X-ray structures available of AZM bound to various CA isoforms, but these complexes do not show the charged state of AZM, or hydrogen (H) atom positions of the protein and solvent. Neutron diffraction is a useful technique for directly observing H atoms and the mapping of H-bonding networks that can greatly contribute to rational drug design. To this end the neutron structure of H/D exchanged HCA II crystals in complex with AZM was determined. The structure reveals the molecular details of AZM binding and the charged state of the bound drug. This represents the first determined neutron structure of a clinically used drug bound to its target. PMID:22928733

Rapid, Quantitative Assessment of Submerged Cultural Resource Degradation Using Repeat Video Surveys and Structure from Motion

NASA Astrophysics Data System (ADS)

Mertes, J. R.; Zant, C. N.; Gulley, J. D.; Thomsen, T. L.

2017-08-01

Monitoring, managing and preserving submerged cultural resources (SCR) such as shipwrecks can involve time consuming detailed physical surveys, expensive side-scan sonar surveys, the study of photomosaics and even photogrammetric analysis. In some cases, surveys of SCR have produced 3D models, though these models have not typically been used to document patterns of site degradation over time. In this study, we report a novel approach for quantifying degradation and changes to SCR that relies on diver-acquired video surveys, generation of 3D models from data acquired at different points in time using structure from motion, and differencing of these models. We focus our study on the shipwreck S.S. Wisconsin, which is located roughly 10.2 km southeast of Kenosha, Wisconsin, in Lake Michigan. We created two digital elevation models of the shipwreck using surveys performed during the summers of 2006 and 2015 and differenced these models to map spatial changes within the wreck. Using orthomosaics and difference map data, we identified a change in degradation patterns. Degradation was anecdotally believed to be caused by inward collapse, but maps indicated a pattern of outward collapse of the hull structure, which has resulted in large scale shifting of material in the central upper deck. In addition, comparison of the orthomosaics with the difference map clearly shows movement of objects, degradation of smaller pieces and in some locations, an increase in colonization of mussels.

A Pyramid Scheme for Constructing Geologic Maps on Geobrowsers

NASA Astrophysics Data System (ADS)

Whitmeyer, S. J.; de Paor, D. G.; Daniels, J.; Jeremy, N.; Michael, R.; Santangelo, B.

2008-12-01

Hundreds of geologic maps have been draped onto Google Earth (GE) using the ground overlay tag of Keyhole Markup Language (KML) and dozens have been published on academic and survey web pages as downloadable KML or KMZ (zipped KML) files. The vast majority of these are small KML docs that link to single, large - often very large - image files (jpegs, tiffs, etc.) Files that exceed 50 MB in size defeat the purpose of GE as an interactive and responsive, and therefore fast, virtual terrain medium. KML supports super-overlays (a.k.a. image pyramids), which break large graphic files into manageable tiles that load only when they are in the visible region at a sufficient level of detail (LOD), and several automatic tile-generating applications have been written. The process of exporting map data from applications such as ArcGIS® to KML format is becoming more manageable but still poses challenges. Complications arise, for example, because of differences between grid-north at a point on a map and true north at the equivalent location on the virtual globe. In our recent field season, we devised ways of overcoming many of these obstacles in order to generate responsive, panable, zoomable geologic maps in which data is layered in a pyramid structure similar to the image pyramid used for default GE terrain. The structure of our KML code for each level of the pyramid is self-similar: (i) check whether the current tile is in the visible region, (ii) if so, render the current overlay, (iii) add the current data level, and (iv) using four network links, check the visibility and LOD of four nested tiles. By using this pyramid structure we provide the user with access to geologic and map data at multiple levels of observation. For example, when the viewpoint is distant, regional structures and stratigraphy (e.g. lithological groups and terrane boundaries) are visible. As the user zooms to lower elevations, formations and ultimately individual outcrops come into focus. The pyramid structure is ideally suited to geologic data which tends to be unevenly exposed across the earth's surface.

An Integrated Tone Mapping for High Dynamic Range Image Visualization

NASA Astrophysics Data System (ADS)

Liang, Lei; Pan, Jeng-Shyang; Zhuang, Yongjun

2018-01-01

There are two type tone mapping operators for high dynamic range (HDR) image visualization. HDR image mapped by perceptual operators have strong sense of reality, but will lose local details. Empirical operators can maximize local detail information of HDR image, but realism is not strong. A common tone mapping operator suitable for all applications is not available. This paper proposes a novel integrated tone mapping framework which can achieve conversion between empirical operators and perceptual operators. In this framework, the empirical operator is rendered based on improved saliency map, which simulates the visual attention mechanism of the human eye to the natural scene. The results of objective evaluation prove the effectiveness of the proposed solution.

Interannual variability of monthly Southern Ocean sea ice distributions

NASA Technical Reports Server (NTRS)

Parkinson, Claire L.

1992-01-01

The interannual variability of the Southern-Ocean sea-ice distributions was mapped and analyzed using data from Nimbus-5 ESMR and Nimbus-7 SMMR, collected from 1973 to 1987. The set of 12 monthly maps obtained reveals many details on spatial variability that are unobtainable from time series of ice extents. These maps can be used as baseline maps for comparisons against future Southern Ocean sea ice distributions. The maps are supplemented by more detailed maps of the frequency of ice coverage, presented in this paper for one month within each of the four seasons, and by the breakdown of these results to the periods covered individually by each of the two passive-microwave imagers.

Image defog algorithm based on open close filter and gradient domain recursive bilateral filter

NASA Astrophysics Data System (ADS)

Liu, Daqian; Liu, Wanjun; Zhao, Qingguo; Fei, Bowen

2017-11-01

To solve the problems of fuzzy details, color distortion, low brightness of the image obtained by the dark channel prior defog algorithm, an image defog algorithm based on open close filter and gradient domain recursive bilateral filter, referred to as OCRBF, was put forward. The algorithm named OCRBF firstly makes use of weighted quad tree to obtain more accurate the global atmospheric value, then exploits multiple-structure element morphological open and close filter towards the minimum channel map to obtain a rough scattering map by dark channel prior, makes use of variogram to correct the transmittance map,and uses gradient domain recursive bilateral filter for the smooth operation, finally gets recovery images by image degradation model, and makes contrast adjustment to get bright, clear and no fog image. A large number of experimental results show that the proposed defog method in this paper can be good to remove the fog , recover color and definition of the fog image containing close range image, image perspective, the image including the bright areas very well, compared with other image defog algorithms,obtain more clear and natural fog free images with details of higher visibility, what's more, the relationship between the time complexity of SIDA algorithm and the number of image pixels is a linear correlation.

Eyjafjallajokull Volcano Plume Particle-Type Characterization from Space-Based Multi-angle Imaging

NASA Technical Reports Server (NTRS)

Kahn, Ralph A.; Limbacher, James

2012-01-01

The Multi-angle Imaging SpectroRadiometer (MISR) Research Aerosol algorithm makes it possible to study individual aerosol plumes in considerable detail. From the MISR data for two optically thick, near-source plumes from the spring 2010 eruption of the Eyjafjallaj kull volcano, we map aerosol optical depth (AOD) gradients and changing aerosol particle types with this algorithm; several days downwind, we identify the occurrence of volcanic ash particles and retrieve AOD, demonstrating the extent and the limits of ash detection and mapping capability with the multi-angle, multi-spectral imaging data. Retrieved volcanic plume AOD and particle microphysical properties are distinct from background values near-source, as well as for overwater cases several days downwind. The results also provide some indication that as they evolve, plume particles brighten, and average particle size decreases. Such detailed mapping offers context for suborbital plume observations having much more limited sampling. The MISR Standard aerosol product identified similar trends in plume properties as the Research algorithm, though with much smaller differences compared to background, and it does not resolve plume structure. Better optical analogs of non-spherical volcanic ash, and coincident suborbital data to validate the satellite retrieval results, are the factors most important for further advancing the remote sensing of volcanic ash plumes from space.

3D crustal structure of the Alpine belt and foreland basins as imaged by ambient-noise surface wave

NASA Astrophysics Data System (ADS)

Molinari, Irene; Morelli, Andrea; Cardi, Riccardo; Boschi, Lapo; Poli, Piero; Kissling, Edi

2016-04-01

We derive a 3-D crustal structure (S wave velocity) underneath northern Italy and the wider Alpine region, from an extensive data set of measurements of Rayleigh-wave phase- and group-velocities from ambient noise correlation among all seismographic stations available to date in the region, via a constrained tomographic inversion made to honor detailed active source reflection/refraction profiles and other geological information. We first derive a regional-scale surface wave tomography from ambient-noise-based phase- and group- surface wave velocity observations (Verbeke et al., 2012). Our regional 3D model (Molinari et al., 2015) shows the low velocity area beneath the Po Plain and the Molasse basin; the contrast between the low-velocity crust of the Adriatic domain and the high-velocity crust of the Tyrrhenian domain is clearly seen, as well as an almost uniform crystalline crust beneath the Alpine belt. However, higher frequency data can be exploited to achieve higher resolution images of the Po Plain and Alpine foreland 3D crustal structure. We collected and analyze one year of noise records (2011) of ~100 North Italy seismic broadband stations, we derive the Green functions between each couple of stations and we measure the phase- and group-Rayleigh wave velocity. We conduct a suite of linear least squares inversion of both phase- and group-velocity data, resulting in 2-D maps of Rayleigh-wave phase and group velocity at periods between 3 and 40s with a resolution of 0.1x0.1 degrees. The maps are then inverted to get the 3D structure with unprecedented details. We present here our results, we compare them with other studies, and we discuss geological/geodynamical implications. We believe that such a model stands for the most up-to-date seismological information on the crustal structure of the Alpine belt and foreland basins, and it can represent a reliable reference for further, more detailed, studies to come, based on the high seismograph station density being accomplished by the AlpArray project.

Quantitative magneto-optical investigation of superconductor/ferromagnet hybrid structures

NASA Astrophysics Data System (ADS)

Shaw, G.; Brisbois, J.; Pinheiro, L. B. G. L.; Müller, J.; Blanco Alvarez, S.; Devillers, T.; Dempsey, N. M.; Scheerder, J. E.; Van de Vondel, J.; Melinte, S.; Vanderbemden, P.; Motta, M.; Ortiz, W. A.; Hasselbach, K.; Kramer, R. B. G.; Silhanek, A. V.

2018-02-01

We present a detailed quantitative magneto-optical imaging study of several superconductor/ferromagnet hybrid structures, including Nb deposited on top of thermomagnetically patterned NdFeB and permalloy/niobium with erasable and tailored magnetic landscapes imprinted in the permalloy layer. The magneto-optical imaging data are complemented with and compared to scanning Hall probe microscopy measurements. Comprehensive protocols have been developed for calibrating, testing, and converting Faraday rotation data to magnetic field maps. Applied to the acquired data, they reveal the comparatively weaker magnetic response of the superconductor from the background of larger fields and field gradients generated by the magnetic layer.

Geologic map of the Devore 7.5' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Morton, Douglas M.; Matti, Jonathan C.

2001-01-01

This Open-File Report contains a digital geologic map database of the Devore 7.5' quadrangle, San Bernardino County, California, that includes: 1. ARC/INFO (Environmental Systems Research Institute) version 7.2.1 coverages of the various components of the geologic map 2. A PostScript (.ps) file to plot the geologic map on a topographic base, containing a Correlation of Map Units diagram, a Description of Map Units, an index map, and a regional structure map 3. Portable Document Format (.pdf) files of: a. This Readme; includes an Appendix, containing metadata details found in devre_met.txt b. The same graphic as plotted in 2 above. (Test plots from this .pdf do not produce 1:24,000-scale maps. Adobe Acrobat page-size settings control map scale.) The Correlation of Map Units and Description of Map Units are in the editorial format of USGS Miscellaneous Investigations Series maps (I-maps) but have not been edited to comply with I-map standards. Within the geologic-map data package, map units are identified by such standard geologic-map criteria as formation name, age, and lithology. Even though this is an author-prepared report, every attempt has been made to closely adhere to the stratigraphic nomenclature of the U.S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (3b above) or plotting the postscript file (2 above). If roads in some areas, especially forest roads that parallel topographic contours, do not show well on plots of the geologic map, we recommend use of the USGS Devore 7.5’ topographic quadrangle in conjunction with the geologic map.

Vulnerabilities to Rock-Slope Failure Impacts from Christchurch, NZ Case History Analysis

NASA Astrophysics Data System (ADS)

Grant, A.; Wartman, J.; Massey, C. I.; Olsen, M. J.; Motley, M. R.; Hanson, D.; Henderson, J.

2015-12-01

Rock-slope failures during the 2010/11 Canterbury (Christchurch), New Zealand Earthquake Sequence resulted in 5 fatalities and caused an estimated US$400 million of damage to buildings and infrastructure. Reducing losses from rock-slope failures requires consideration of both hazard (i.e. likelihood of occurrence) and risk (i.e. likelihood of losses given an occurrence). Risk assessment thus requires information on the vulnerability of structures to rock or boulder impacts. Here we present 32 case histories of structures impacted by boulders triggered during the 2010/11 Canterbury earthquake sequence, in the Port Hills region of Christchurch, New Zealand. The consequences of rock fall impacts on structures, taken as penetration distance into structures, are shown to follow a power-law distribution with impact energy. Detailed mapping of rock fall sources and paths from field mapping, aerial lidar digital elevation model (DEM) data, and high-resolution aerial imagery produced 32 well-constrained runout paths of boulders that impacted structures. Impact velocities used for structural analysis were developed using lumped mass 2-D rock fall runout models using 1-m resolution lidar elevation data. Model inputs were based on calibrated surface parameters from mapped runout paths of 198 additional boulder runouts. Terrestrial lidar scans and structure from motion (SfM) imagery generated 3-D point cloud data used to measure structural damage and impacting boulders. Combining velocity distributions from 2-D analysis and high-precision boulder dimensions, kinetic energy distributions were calculated for all impacts. Calculated impact energy versus penetration distance for all cases suggests a power-law relationship between damage and impact energy. These case histories and resulting fragility curve should serve as a foundation for future risk analysis of rock fall hazards by linking vulnerability data to the predicted energy distributions from the hazard analysis.

Deblurring

NASA Technical Reports Server (NTRS)

Gevins, A.; Le, J.; Leong, H.; McEvoy, L. K.; Smith, M. E.

1999-01-01

In most instances, traditional EEG methodology provides insufficient spatial detail to identify relationships between brain electrical events and structures and functions visualized by magnetic resonance imaging or positron emission tomography. This article describes a method called Deblurring for increasing the spatial detail of the EEG and for fusing neurophysiologic and neuroanatomic data. Deblurring estimates potentials near the outer convexity of the cortex using a realistic finite element model of the structure of a subject's head determined from their magnetic resonance images. Deblurring is not a source localization technique and thus makes no assumptions about the number or type of generator sources. The validity of Deblurring has been initially tested by comparing deblurred data with potentials measured with subdural grid recordings. Results suggest that deblurred topographic maps, registered with a subject's magnetic resonance imaging and rendered in three dimensions, provide better spatial detail than has heretofore been obtained with scalp EEG recordings. Example results are presented from research studies of somatosensory stimulation, movement, language, attention and working memory. Deblurred ictal EEG data are also presented, indicating that this technique may have future clinical application as an aid to seizure localization and surgical planning.

Freestream Effects on Boundary Layer Disturbances for HIFiRE-5 (Postprint)

DTIC Science & Technology

2015-01-01

hypersonic wind tunnel . For Mach 6.5 and 7, there was no evidence of traveling crossflow waves . However, higher-frequency disturbances were observed. These...disturbances. The structure of these disturbances (phase velocity and wave angle) is similar in both wind tunnels . Coherence measurements in the ACE show that...These include detailed mapping of disturbance fields in the wind tunnel , including higher-frequency measurements, multi-point probe mea- surements to

Software Engineering Laboratory (SEL) database organization and user's guide, revision 2

NASA Technical Reports Server (NTRS)

Morusiewicz, Linda; Bristow, John

1992-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base table is described. In addition, techniques for accessing the database through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL) are discussed.

Software Engineering Laboratory (SEL) database organization and user's guide

NASA Technical Reports Server (NTRS)

So, Maria; Heller, Gerard; Steinberg, Sandra; Spiegel, Douglas

1989-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base tables is described. In addition, techniques for accessing the database, through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL), are discussed.

Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space

PubMed Central

2014-01-01

Background Due to rapid sequencing of genomes, there are now millions of deposited protein sequences with no known function. Fast sequence-based comparisons allow detecting close homologs for a protein of interest to transfer functional information from the homologs to the given protein. Sequence-based comparison cannot detect remote homologs, in which evolution has adjusted the sequence while largely preserving structure. Structure-based comparisons can detect remote homologs but most methods for doing so are too expensive to apply at a large scale over structural databases of proteins. Recently, fragment-based structural representations have been proposed that allow fast detection of remote homologs with reasonable accuracy. These representations have also been used to obtain linearly-reducible maps of protein structure space. It has been shown, as additionally supported from analysis in this paper that such maps preserve functional co-localization of the protein structure space. Methods Inspired by a recent application of the Latent Dirichlet Allocation (LDA) model for conducting structural comparisons of proteins, we propose higher-order LDA-obtained topic-based representations of protein structures to provide an alternative route for remote homology detection and organization of the protein structure space in few dimensions. Various techniques based on natural language processing are proposed and employed to aid the analysis of topics in the protein structure domain. Results We show that a topic-based representation is just as effective as a fragment-based one at automated detection of remote homologs and organization of protein structure space. We conduct a detailed analysis of the information content in the topic-based representation, showing that topics have semantic meaning. The fragment-based and topic-based representations are also shown to allow prediction of superfamily membership. Conclusions This work opens exciting venues in designing novel representations to extract information about protein structures, as well as organizing and mining protein structure space with mature text mining tools. PMID:25080993

Fundamental quantum noise mapping with tunnelling microscopes tested at surface structures of subatomic lateral size.

PubMed

Herz, Markus; Bouvron, Samuel; Ćavar, Elizabeta; Fonin, Mikhail; Belzig, Wolfgang; Scheer, Elke

2013-10-21

We present a measurement scheme that enables quantitative detection of the shot noise in a scanning tunnelling microscope while scanning the sample. As test objects we study defect structures produced on an iridium single crystal at low temperatures. The defect structures appear in the constant current images as protrusions with curvature radii well below the atomic diameter. The measured power spectral density of the noise is very near to the quantum limit with Fano factor F = 1. While the constant current images show detailed structures expected for tunnelling involving d-atomic orbitals of Ir, we find the current noise to be without pronounced spatial variation as expected for shot noise arising from statistically independent events.

Tree Colors: Color Schemes for Tree-Structured Data.

PubMed

Tennekes, Martijn; de Jonge, Edwin

2014-12-01

We present a method to map tree structures to colors from the Hue-Chroma-Luminance color model, which is known for its well balanced perceptual properties. The Tree Colors method can be tuned with several parameters, whose effect on the resulting color schemes is discussed in detail. We provide a free and open source implementation with sensible parameter defaults. Categorical data are very common in statistical graphics, and often these categories form a classification tree. We evaluate applying Tree Colors to tree structured data with a survey on a large group of users from a national statistical institute. Our user study suggests that Tree Colors are useful, not only for improving node-link diagrams, but also for unveiling tree structure in non-hierarchical visualizations.

Geologic map of Detrital, Hualapai, and Sacramento Valleys and surrounding areas, northwest Arizona

USGS Publications Warehouse

Beard, L. Sue; Kennedy, Jeffrey; Truini, Margot; Felger, Tracey

2011-01-01

A 1:250,000-scale geologic map and report covering the Detrital, Hualapai, and Sacramento valleys in northwest Arizona is presented for the purpose of improving understanding of the geology and geohydrology of the basins beneath those valleys. The map was compiled from existing geologic mapping, augmented by digital photogeologic reconnaissance mapping. The most recent geologic map for the area, and the only digital one, is the 1:1,000,000-scale Geologic Map of Arizona. The larger scale map presented here includes significantly more detailed geology than the Geologic Map of Arizona in terms of accuracy of geologic unit contacts, number of faults, fault type, fault location, and details of Neogene and Quaternary deposits. Many sources were used to compile the geology; the accompanying geodatabase includes a source field in the polygon feature class that lists source references for polygon features. The citations for the source field are included in the reference section.

Interpretation of detailed aerial gamma-ray survey, Jabal Ashirah area, southeastern Arabian Shield, Kingdom of Saudi Arabia

USGS Publications Warehouse

Duval, J.S.

1987-01-01

A detailed aerial gamma-ray spectrometric survey of the Jabal Ashirah area in the southeastern Arabian Shield has been analyzed using computer-classification algorithms. The analysis resulted in maps that show radiometric map units and gamma-ray anomalies indicating the presence of possible concentrations of potassium and uranium. The radiometric-unit map was interpreted to 'produce a simplified radiolithic map that was correlated with the mapped geology. The gamma-ray data show uranium anomalies that coincide with a tin-bearing granite, but known gold and nickel mineralization do not have any associated gamma-ray signatures.

Interpreting fMRI data: maps, modules and dimensions

PubMed Central

Op de Beeck, Hans P.; Haushofer, Johannes; Kanwisher, Nancy G.

2009-01-01

Neuroimaging research over the past decade has revealed a detailed picture of the functional organization of the human brain. Here we focus on two fundamental questions that are raised by the detailed mapping of sensory and cognitive functions and illustrate these questions with findings from the object-vision pathway. First, are functionally specific regions that are located close together best understood as distinct cortical modules or as parts of a larger-scale cortical map? Second, what functional properties define each cortical map or module? We propose a model in which overlapping continuous maps of simple features give rise to discrete modules that are selective for complex stimuli. PMID:18200027

10. Detail of map showing Battery Davis and Panama Gun ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

10. Detail of map showing Battery Davis and Panama Gun Mounts at right, by U.S. Engineering Office, San Francisco, California, August 5, 1934. - Fort Funston, Panama Mounts for 155mm Guns, Skyline Boulevard & Great Highway, San Francisco, San Francisco County, CA

The South Fork detachment fault, Park County, Wyoming: discussion and reply ( USA).

USGS Publications Warehouse

Pierce, W.G.

1986-01-01

Blackstone (1985) published an interpretation of South form detachment fault and related features. His interpretation of the area between Castle and Hardpan transverse faults is identical to mine of 1941. Subsequent detailed mapping has shown that the structure between the transverse faults is more complicated than originally envisioned and resurrected by Blackstone. The present paper describes and discusses geologic features that are the basis for my interpretations; also discussed are differences between my interpretations and those of Blackstone. Most data are shown on the geologic map of the Wapiti Quadrangle (Pierce and Nelson, 1969). Blackstone's 'allochthonous' masses are part of the South Form fault. Occurrences of Sundance Formation, which he interpreted as the upper plate of his 'North Fork fault', are related to Heart Mountain fault. Volcaniclastic rocks south of Jim Mountain mapped as Aycross Formation by Torres and Gingerich may be Cathedral Cliffs Formation, emplaced by movement of the Heart Mountain fault. - Author

Use of Magsat anomaly data for crustal structure and mineral resources in the US midcontinent

NASA Technical Reports Server (NTRS)

Carmichael, R. S. (Principal Investigator)

1981-01-01

Magnetic profiles on individual satellites tracks were examined to identify bad (nonterrestrially-based) data points r profiles. Anomaly profiles for the same satellite track, but at different passes were compared for parallel tracks and for tracks that cross. The selected and processed data were plotted and contoured to develop a preliminary magnetic anomaly map. The map is similar in general morphology to NASA's Magsat global scalar anomaly map, but has more detail which is related to crustal properties. Efforts have begun to interpret the satellite magnetic anomalies in terms of crustal character. The correlation of magnetics with crustal petrology may have a much larger tectonic implication. Th possibility of there being an ultramafic lower crust along one zone as a consequence of a continental collision/subduction which helped form the midcontinent craton in Precambrian times is being investigated.

Vegetation map for the Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex on the island of Hawai‘i

USGS Publications Warehouse

Jacobi, James D.

2017-01-01

This vegetation map was produced to serve as an updated habitat base for management of natural resources of the Hakalau Forest Unit (HFU) of the Big Island National Wildlife Refuge Complex (Refuge) on the island of Hawai‘i. The map is based on a vegetation map originally produced as part of the U.S. Fish and Wildlife Service’s Hawai‘i Forest Bird Survey to depict the distribution, structure, and composition of plant communities on the island of Hawai‘i as they existed in 1977. The current map has been updated to represent current conditions of plant communities in the HFU, based on WorldView 2 imagery taken in 2012 and very-high-resolution imagery collected by Pictometry International from 2010 to 2014. Thirty-one detailed plant communities are identified on this map, and fourteen of these units are found within the boundaries of HFU. Additionally, the mapped units can be displayed as five tree canopy cover units, three moisture zones units, eight dominant tree species units, and four habitat status units by choosing the various fields to group the units from the map attribute table. This updated map will provide a foundation for the refinement and tracking of management actions on the Refuge for the near future, particularly as the habitats in this area are subject to projected climate change.

Seafloor mapping of the southeast Iberian margin (from Cabo de Palos to Cabo de Gata)

NASA Astrophysics Data System (ADS)

Lastras, Galderic; Leon, César; Elvira, Elena; Pascual, Laura; Muñoz, Araceli; de Cárdenas, Enrique; Acosta, Juan; Canals, Miquel

2014-05-01

We present the multibeam bathymetry and derived maps of the southeast Iberian margin from Cabo de Palos to Cabo de Gata, 37º35'N to 35º45'N and 2º10'W to 0º20'E, from the coastline down to the Algero-Balearic abyssal plain at depths exceeding 2600 m. The edition of of the maps is carried out within the Complementary Action VALORPLAT ("Scientific valorisation of multibeam bathymetry data from the Spanish continental shelf and slope"), funded by the Spanish Ministry of Economy and Competitivity. The multibeam bathymetry data of the slope and abyssal plain were obtained during different surveys in 2004, 2006 and 2007 on board R/V Vizconde de Eza with a Simrad EM300 multibeam echo-sounder as part of the CAPESME Project, a collaboration between the Spanish Institute of Oceanography (IEO) and General Secretariat of Fisheries (SGP), primarily aiming at creating maps of the fishing grounds of the Mediterranean continental margins of Spain. Multibeam bathymetry data from the continental shelf were obtained within the ESPACE project, also in a cooperative frame between IEO and SGP. The map series is constituted by a general map at 1:400,000 scale and 14 detailed maps at 1:75,000 scale, which include inset maps on slope gradients and seafloor nature (rock or sediment type), the later obtained with rock dredges and Shipeck sediment dredges. Both the detailed maps and the general map are available in paper print, and the whole collection is also distributed in an edited USB. The geological features displayed in the different maps include the continental shelf, with abundant geomorphic features indicative of past sea-level changes, the continental slope carved by the Palos, Tiñoso, Cartagena Este, Cartagena Oeste, Águilas, Almanzora, Alias, Garrucha and Gata submarine canyons, the Mazarrón, Palomares and Al-Mansour escarpments, the Abubácer, Maimonides and Yusuf ridges, the Águilas and Al-Mansour seamounts, and the Algero-Balearic abyssal plain where prominent halokinetic deformation structures have been observed. The edited maps are available from the MAGRAMA (Ministerio de Agricultura, Alimentación y Medio Ambiente) publication store (https://aplicaciones.magrama.es/tienda/index.jsp).

The rotational order-disorder structure of the reversibly photoswitchable red fluorescent protein rsTagRFP.

PubMed

Pletnev, Sergei; Subach, Fedor V; Verkhusha, Vladislav V; Dauter, Zbigniew

2014-01-01

The rotational order-disorder (OD) structure of the reversibly photoswitchable fluorescent protein rsTagRFP is discussed in detail. The structure is composed of tetramers of 222 symmetry incorporated into the lattice in two different orientations rotated 90° with respect to each other around the crystal c axis and with tetramer axes coinciding with the crystallographic twofold axes. The random distribution of alternatively oriented tetramers in the crystal creates the rotational OD structure with statistically averaged I422 symmetry. Despite order-disorder pathology, the structure of rsTagRFP has electron-density maps of good quality for both non-overlapping and overlapping parts of the model. The crystal contacts, crystal internal architecture and a possible mechanism of rotational OD crystal formation are discussed.

Sidescan sonar imagery and surficial geologic interpretation of the sea floor off Branford, Conneticut

USGS Publications Warehouse

Poppe, L.J.; Paskevich, V.F.; Moser, M.S.; DiGiacomo-Cohen, M. L.; Christman, E.B.

2004-01-01

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration (NOAA) and the Connecticut Department of Environmental Protection (CT DEP), Figure 1 - Map of Study Areahas produced detailed geologic maps of the sea floor in Long Island Sound, a major East Coast estuary surrounded by the most densely populated region of the United States. These studies have built upon cooperative research between the USGS and the State of Connecticut that was initiated in 1982. The current phase of this research program is directed toward studies of sea-floor sediment distribution, processes that control sediment distribution, nearshore environmental concerns, and the relation of benthic community structures to the sea-floor geology. Anthropogenic wastes, toxic chemicals, and changes in land-use patterns resulting from residential, commercial, and recreational development have stressed the environment of the Sound, causing degradation and potential loss of benthic habitats (Koppelman and others, 1976; Long Island Sound Study, 1994). Detailed maps of the sea floor are needed to help evaluate the extent of adverse impacts and to help wisely manage resources in the future. Therefore, in a continuing effort to better understand Long Island Sound, we are constructing and interpreting sidescan sonar mosaics (complete-coverage acoustic images of the sea floor) within specific areas of special interest (Poppe and Polloni, 1998). The mosaic presented herein, which was produced during survey H11043 by NOAA 's Atlantic Hydrographic Branch, covers approximately 41.1 km2 of the sea floor in north-central Long Island Sound off Branford, Connecticut. Shell bed provides shelter for juvenille skate.The mosaic and its interpretation serve many purposes, including: (1) defining the geological variability of the sea floor, which is one of the primary controls of benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and the distribution of benthic habitats and associated infaunal community structures; and (3) providing a detailed framework for future research, monitoring, and management activities. The sidescan sonar mosaic also serves as a base map for subsequent sedimentological, geochemical, and biological observations, because precise information on environmental setting is important for selection of sampling sites and for appropriate interpretation of point measurements.

EnviroAtlas Tree Cover Configuration and Connectivity, Water Background Web Service

EPA Pesticide Factsheets

This EnviroAtlas web service supports research and online mapping activities related to EnviroAtlas (https://www.epa.gov/enviroatlas). The 1-meter resolution tree cover configuration and connectivity map categorizes tree cover into structural elements (e.g. core, edge, connector, etc.). Source imagery varies by community. For specific information about methods and accuracy of each community's tree cover configuration and connectivity classification, consult their individual metadata records: Austin, TX (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B29D2B039-905C-4825-B0B4-9315122D6A9F%7D); Cleveland, OH (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B03cd54e1-4328-402e-ba75-e198ea9fbdc7%7D); Des Moines, IA (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B350A83E6-10A2-4D5D-97E6-F7F368D268BB%7D); Durham, NC (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7BC337BA5F-8275-4BA8-9647-F63C443F317D%7D); Fresno, CA (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B84B98749-9C1C-4679-AE24-9B9C0998EBA5%7D); Green Bay, WI (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7B69E48A44-3D30-4E84-A764-38FBDCCAC3D0%7D); Memphis, TN (https://edg.epa.gov/metadata/catalog/search/resource/details.page?uuid=%7BB7313ADA-04F7-4D80-ABBA-77E753AAD002%7D); Milwaukee, WI (https://edg.epa.gov/metadata/catalog/search/resource/details.page?u

Physiographic map of the Sicilian region (1:250,000 scale)

NASA Astrophysics Data System (ADS)

Priori, Simone; Fantappiè, Maria; Costantini, Edoardo A. C.

2015-04-01

Physiographic maps summarize and group the landforms of a territory into homogeneous areas in terms of kind and intensity of main geomorphological process. Most of the physiographic maps have large scale, which is national or continental scale. Other maps have been produced at the semi-detailed scales, while examples at the regional scale are much less common. However, being the Region the main administrative level in Europe, they can be very useful for land planning in many fields, such as ecological studies, risk maps, and soil mapping. This work presents a methodological example of regional physiographic map, compiled at 1:250,000 scale, representing the whole Sicilian region, the largest and most characteristic of Mediterranean island. The physiographic units were classed matching thematich layers (NDVI, geology, DEM, land cover) with the main geomorphological processes that were identified by stereo-interpretation of aerial photographs (1:70,000 scale). In addition, information from other published maps, representing geomorphological forms, aeolian deposits, anthropic terraced slopes, and landslide were used to improve the accuracy and reliability of the map. The classification of the physiographic units, and then the map legend, was built up on the basis of literature and taking into account Italian geomorphological legend. The legend proposed in this map, which can be applied also in other Mediterranean countries, is suitable for different scales. The landform units were grouped on the base of a geomorphological classification of the forms into: anthropogenic, eolian, coastal, valley floor, intermountain fluvial, slope erosional, structural, karstic, and volcanic.

A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes.

PubMed

Davidson, Edgar; Doranz, Benjamin J

2014-09-01

Characterizing the binding sites of monoclonal antibodies (mAbs) on protein targets, their 'epitopes', can aid in the discovery and development of new therapeutics, diagnostics and vaccines. However, the speed of epitope mapping techniques has not kept pace with the increasingly large numbers of mAbs being isolated. Obtaining detailed epitope maps for functionally relevant antibodies can be challenging, particularly for conformational epitopes on structurally complex proteins. To enable rapid epitope mapping, we developed a high-throughput strategy, shotgun mutagenesis, that enables the identification of both linear and conformational epitopes in a fraction of the time required by conventional approaches. Shotgun mutagenesis epitope mapping is based on large-scale mutagenesis and rapid cellular testing of natively folded proteins. Hundreds of mutant plasmids are individually cloned, arrayed in 384-well microplates, expressed within human cells, and tested for mAb reactivity. Residues are identified as a component of a mAb epitope if their mutation (e.g. to alanine) does not support candidate mAb binding but does support that of other conformational mAbs or allows full protein function. Shotgun mutagenesis is particularly suited for studying structurally complex proteins because targets are expressed in their native form directly within human cells. Shotgun mutagenesis has been used to delineate hundreds of epitopes on a variety of proteins, including G protein-coupled receptor and viral envelope proteins. The epitopes mapped on dengue virus prM/E represent one of the largest collections of epitope information for any viral protein, and results are being used to design better vaccines and drugs. © 2014 John Wiley & Sons Ltd.

Mapping nuclear craters on Enewetak Atoll, Marshall Islands

USGS Publications Warehouse

Hampson, John C., Jr.

1986-01-01

In 1984, the U.S. Geological Survey conducted a detailed geologic analysis of two nuclear test craters at Enewetak Atoll, Marshall Islands, on behalf of the Defense Nuclear Agency. A multidisciplinary task force mapped the morphology, surface character, and subsurface structure of two craters, OAK and KOA. The field mapping techniques include echo sounding, sidescan sonar imaging, single-channel and multichannel seismic reflection profiling, a seismic refraction survey, and scuba and submersible operations. All operations had to be navigated precisely and correlatable with subsequent drilling and sampling operations. Mapping with a high degree of precision at scales as large as 1:1500 required corrections that often are not considered in marine mapping. Corrections were applied to the bathymetric data for location of the echo- sounding transducer relative to the navigation transponder on the ship and for transducer depth, speed of sound, and tidal variations. Sidescan sonar, single-channel seismic reflection, and scuba and submersible data were correlated in depth and map position with the bathymetric data to provide a precise, internally consistent data set. The multichannel and refraction surveys were conducted independently but compared well with bathymetry. Examples drawn from processing the bathymetric, sidescan sonar, and single- channel reflection data help illustrate problems and procedures in precision mapping.

Scanning electron microscopy/energy dispersive spectrometry fixedbeam or overscan x-ray microanalysis of particles can miss the real structure: x-ray spectrum image mapping reveals the true nature

NASA Astrophysics Data System (ADS)

Newbury, Dale E.; Ritchie, Nicholas W. M.

2013-05-01

The typical strategy for analysis of a microscopic particle by scanning electron microscopy/energy dispersive spectrometry x-ray microanalysis (SEM/EDS) is to use a fixed beam placed at the particle center or to continuously overscan to gather an "averaged" x-ray spectrum. While useful, such strategies inevitably concede any possibility of recognizing microstructure within the particle, and such fine scale structure is often critical for understanding the origins, behavior, and fate of particles. Elemental imaging by x-ray mapping has been a mainstay of SEM/EDS analytical practice for many years, but the time penalty associated with mapping with older EDS technology has discouraged its general use and reserved it more for detailed studies that justified the time investment. The emergence of the high throughput, high peak stability silicon drift detector (SDD-EDS) has enabled a more effective particle mapping strategy: "flash" x-ray spectrum image maps can now be recorded in seconds that capture the spatial distribution of major (concentration, C > 0.1 mass fraction) and minor (0.01 <= C <= 0.1) constituents. New SEM/SDD-EDS instrument configurations feature multiple SDDs that view the specimen from widely spaced azimuthal angles. Multiple, simultaneous measurements from different angles enable x-ray spectrometry and mapping that can minimize the strong geometric effects of particles. The NIST DTSA-II software engine is a powerful aid for quantitatively analyzing EDS spectra measured individually as well as for mapping information (available free for Java platforms at: http://www.cstl.nist.gov/div837/837.02/epq/dtsa2/index.html).

Bas-relief map using texture analysis with application to live enhancement of ultrasound images.

PubMed

Du, Huarui; Ma, Rui; Wang, Xiaoying; Zhang, Jue; Fang, Jing

2015-05-01

For ultrasound imaging, speckle is one of the most important factors in the degradation of contrast resolution because it masks meaningful texture and has the potential to interfere with diagnosis. It is expected that researchers would explore appropriate ways to reduce the speckle noise, to find the edges of structures and enhance weak borders between different organs in ultrasound imaging. Inspired by the principle of differential interference contrast microscopy, a "bas-relief map" is proposed that depicts the texture structure of ultrasound images. Based on a bas-relief map, an adaptive bas-relief filter was developed for ultrafast despeckling. Subsequently, an edge map was introduced to enhance the edges of images in real time. The holistic bas-relief map approach has been used experimentally with synthetic phantoms and digital ultrasound B-scan images of liver, kidney and gallbladder. Based on the visual inspection and the performance metrics of the despeckled images, it was found that the bas-relief map approach is capable of effectively reducing the speckle while significantly enhancing contrast and tissue boundaries for ultrasonic images, and its speckle reduction ability is comparable to that of Kuan, Lee and Frost filters. Meanwhile, the proposed technique could preserve more intra-region details compared with the popular speckle reducing anisotropic diffusion technique and more effectively enhance edges. In addition, the adaptive bas-relief filter was much less time consuming than the Kuan, Lee and Frost filter and speckle reducing anisotropic diffusion techniques. The bas-relief map strategy is effective for speckle reduction and live enhancement of ultrasound images, and can provide a valuable tool for clinical diagnosis. Copyright © 2015 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Crystal structure and functional interpretation of the erythrocyte spectrin tetramerization domain complex

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ipsaro, Jonathan J.; Harper, Sandra L.; Messick, Troy E.

2010-09-07

As the principal component of the membrane skeleton, spectrin confers integrity and flexibility to red cell membranes. Although this network involves many interactions, the most common hemolytic anemia mutations that disrupt erythrocyte morphology affect the spectrin tetramerization domains. Although much is known clinically about the resulting conditions (hereditary elliptocytosis and pyropoikilocytosis), the detailed structural basis for spectrin tetramerization and its disruption by hereditary anemia mutations remains elusive. Thus, to provide further insights into spectrin assembly and tetramer site mutations, a crystal structure of the spectrin tetramerization domain complex has been determined. Architecturally, this complex shows striking resemblance to multirepeat spectrinmore » fragments, with the interacting tetramer site region forming a central, composite repeat. This structure identifies conformational changes in {alpha}-spectrin that occur upon binding to {beta}-spectrin, and it reports the first structure of the {beta}-spectrin tetramerization domain. Analysis of the interaction surfaces indicates an extensive interface dominated by hydrophobic contacts and supplemented by electrostatic complementarity. Analysis of evolutionarily conserved residues suggests additional surfaces that may form important interactions. Finally, mapping of hereditary anemia-related mutations onto the structure demonstrate that most, but not all, local hereditary anemia mutations map to the interacting domains. The potential molecular effects of these mutations are described.« less

Crystal Structure and Functional Interpretation of the Erythrocyte spectrin Tetramerization Domain Complex

DOE Office of Scientific and Technical Information (OSTI.GOV)

J Ipsaro; S Harper; T Messick

2011-12-31

As the principal component of the membrane skeleton, spectrin confers integrity and flexibility to red cell membranes. Although this network involves many interactions, the most common hemolytic anemia mutations that disrupt erythrocyte morphology affect the spectrin tetramerization domains. Although much is known clinically about the resulting conditions (hereditary elliptocytosis and pyropoikilocytosis), the detailed structural basis for spectrin tetramerization and its disruption by hereditary anemia mutations remains elusive. Thus, to provide further insights into spectrin assembly and tetramer site mutations, a crystal structure of the spectrin tetramerization domain complex has been determined. Architecturally, this complex shows striking resemblance to multirepeat spectrinmore » fragments, with the interacting tetramer site region forming a central, composite repeat. This structure identifies conformational changes in {alpha}-spectrin that occur upon binding to {beta}-spectrin, and it reports the first structure of the {beta}-spectrin tetramerization domain. Analysis of the interaction surfaces indicates an extensive interface dominated by hydrophobic contacts and supplemented by electrostatic complementarity. Analysis of evolutionarily conserved residues suggests additional surfaces that may form important interactions. Finally, mapping of hereditary anemia-related mutations onto the structure demonstrate that most, but not all, local hereditary anemia mutations map to the interacting domains. The potential molecular effects of these mutations are described.« less

Ningaloo Reef: Shallow Marine Habitats Mapped Using a Hyperspectral Sensor

PubMed Central

Kobryn, Halina T.; Wouters, Kristin; Beckley, Lynnath E.; Heege, Thomas

2013-01-01

Research, monitoring and management of large marine protected areas require detailed and up-to-date habitat maps. Ningaloo Marine Park (including the Muiron Islands) in north-western Australia (stretching across three degrees of latitude) was mapped to 20 m depth using HyMap airborne hyperspectral imagery (125 bands) at 3.5 m resolution across the 762 km2 of reef environment between the shoreline and reef slope. The imagery was corrected for atmospheric, air-water interface and water column influences to retrieve bottom reflectance and bathymetry using the physics-based Modular Inversion and Processing System. Using field-validated, image-derived spectra from a representative range of cover types, the classification combined a semi-automated, pixel-based approach with fuzzy logic and derivative techniques. Five thematic classification levels for benthic cover (with probability maps) were generated with varying degrees of detail, ranging from a basic one with three classes (biotic, abiotic and mixed) to the most detailed with 46 classes. The latter consisted of all abiotic and biotic seabed components and hard coral growth forms in dominant or mixed states. The overall accuracy of mapping for the most detailed maps was 70% for the highest classification level. Macro-algal communities formed most of the benthic cover, while hard and soft corals represented only about 7% of the mapped area (58.6 km2). Dense tabulate coral was the largest coral mosaic type (37% of all corals) and the rest of the corals were a mix of tabulate, digitate, massive and soft corals. Our results show that for this shallow, fringing reef environment situated in the arid tropics, hyperspectral remote sensing techniques can offer an efficient and cost-effective approach to mapping and monitoring reef habitats over large, remote and inaccessible areas. PMID:23922921

Developing a 30-m grassland productivity estimation map for central Nebraska using 250-m MODIS and 30-m Landsat-8 observations

USGS Publications Warehouse

Gu, Yingxin; Wylie, Bruce K.

2015-01-01

Accurately estimating aboveground vegetation biomass productivity is essential for local ecosystem assessment and best land management practice. Satellite-derived growing season time-integrated Normalized Difference Vegetation Index (GSN) has been used as a proxy for vegetation biomass productivity. A 250-m grassland biomass productivity map for the Greater Platte River Basin had been developed based on the relationship between Moderate Resolution Imaging Spectroradiometer (MODIS) GSN and Soil Survey Geographic (SSURGO) annual grassland productivity. However, the 250-m MODIS grassland biomass productivity map does not capture detailed ecological features (or patterns) and may result in only generalized estimation of the regional total productivity. Developing a high or moderate spatial resolution (e.g., 30-m) productivity map to better understand the regional detailed vegetation condition and ecosystem services is preferred. The 30-m Landsat data provide spatial detail for characterizing human-scale processes and have been successfully used for land cover and land change studies. The main goal of this study is to develop a 30-m grassland biomass productivity estimation map for central Nebraska, leveraging 250-m MODIS GSN and 30-m Landsat data. A rule-based piecewise regression GSN model based on MODIS and Landsat (r = 0.91) was developed, and a 30-m MODIS equivalent GSN map was generated. Finally, a 30-m grassland biomass productivity estimation map, which provides spatially detailed ecological features and conditions for central Nebraska, was produced. The resulting 30-m grassland productivity map was generally supported by the SSURGO biomass production map and will be useful for regional ecosystem study and local land management practices.

Geomorphological map of glaciated gorges in a granitic massif (Gredos range, Central Spain).

NASA Astrophysics Data System (ADS)

Campos, Néstor; Tanarro, Luis Miguel; Palacios, David

2017-04-01

A detailed geomorphological map on a 1:10,000 scale is presented for a high mountain area in Gredos range (Iberian Central System), this area is located in a granitic massif 160 km West of Madrid and comprises three gorges : La Vega, Taheña-Honda and La Nava. Only few detailed geomorphological maps of the Gredos range are available despite the wide diversity of landforms, in order to improve the understanding of this zone, this geomorphological map of the area has been produced, showing in detail the geomorphologic diversity of these gorges. The map was created with the aid of 25 cm resolution aerial photographs, 25 cm resolution satellite images, Iberpix 3D images provided by the Spanish National Geographic Institute and verified with field work. The landforms were delimitated with a stereoscope and satellite image pairs and digitized using GIS and CAD software, in some areas 3D glasses has been used with 3D images and the software Esri ArcScene. The landforms resulting from interpretation of aerial photographs and satellite images were classified using the IGUL (Institute of Geography, University of Lausanne) legend system (developed at the end of the 1980s) combined with the legend proposed by Peña et al. (1997) and some personal adaptations. The map legend includes 45 landforms divided into seven sections: structural, hydrography, fluvial, gravitative, glacial, nival and anthropic landforms. The use of both legend systems allows us to represent the landform types distributed over an area of 40 km2 and to identify the geomorphic processes involved in their morphogenesis, this variety of processes and landforms identified demonstrated that geomorphological cartography obtained by combining traditional image interpretation and GIS technology facilitates the production of geomorphological maps and the obtaining of valuable data for identify and understand surface processes and landforms. References: Maillard, B., Lambiel, C., Martin, S., Pellitero, R., Reynard, E., & Schoeneich, P. (2011). The ArcGIS version of the geomorphological mapping legend of the University of Lausanne. Technical report, Université de Lausanne. Peña, J., Pellicer, F., Chueca, J., & Julián, A. (1997). Leyenda para mapas geomorfológicos a escalas 1:25.000/1:50.000. In J. L. Peña (Ed.), Cartografía Geomorfológica Básica y Aplicada. Geoforma Ed. Logroño. Research funded by Deglaciation project (CGL2015-65813-R), Government of Spain

Extensional Tectonics and Sedimentary Architecture Using 3-D Seismic Data: An Example from Hydrocarbon-Bearing Mumbai Offshore Basin, West Coast of India

NASA Astrophysics Data System (ADS)

Mukhopadhyay, D. K.; Bhowmick, P. K.; Mishra, P.

2016-12-01

In offshore sedimentary basins, analysis of 3-D seismic data tied with well log data can be used to deduce robust isopach and structure contour maps of different stratigraphic formations. The isopach maps give depocenters whereas structure contour maps give structural relief at a specific time. Combination of these two types of data helps us decipher horst-graben structures, sedimentary basin architecture and tectono-stratigraphic relations through Tertiary time. Restoration of structural cross sections with back-stripping of successively older stratigraphic layers leads to better understand tectono-sedimentary evolution of a basin. The Mumbai (or Bombay) Offshore Basin is the largest basin off the west coast of India and includes Bombay High giant oil/gas field. Although this field was discovered in 1974 and still producing, the basin architecture vis-à-vis structural evolution are not well documented. We take the approach briefly outlined above to study in detail three large hydrocarbon-bearing structures located within the offshore basin. The Cretaceous Deccan basalt forms the basement and hosts prodigal thickness (> 8 km at some localities) of Tertiary sedimentary formations.A two stage deformation is envisaged. At the first stage horst and graben structures formed due to approximately E-W extensional tectonics. This is most spectacularly seen at the basement top level. The faults associated with this extension strike NNW. At the second stage of deformation a set of ENE-striking cross faults have developed leading to the formation of transpressional structures at places. High rate of early sedimentation obliterated horst-graben architecture to large extent. An interesting aspect emerges is that the all the large-scale structures have rather low structural relief. However, the areal extent of such structures are very large. Consequently, these structures hold commercial quantities of oil/gas.

High resolution and low altitude magnetic surveys for structural geology mapping in the Seabee mine, Saskatchewan, Canada, using UAV-MAG™ technology.

NASA Astrophysics Data System (ADS)

Braun, A.; Parvar, K.; Burns, M.

2017-12-01

Uninhabited Aerial Vehicles (UAV) provide the operational flexibility and ease of use which makes them ideal tools for low altitude and high resolution magnetic surveys. Being able to fly at lower altitudes compared to manned aircrafts provides the proximity to the target needed to increase the sensitivity to detect smaller and less magnetic targets. Considering the same sensor specifications, this further increases the signal to noise ratio. However, to increase spatial resolution, a tighter line spacing is needed which increases the survey time. We describe a case study in the Seabee mine in Saskatchewan, Canada. Using Pioneer Exploration Ltd. UAV-MAG™ technology, we emphasize the importance of altitude and line spacing in magnetic surveys with UAVs in order to resolve smaller and less magnetic targets compared to conventional manned airborne magnetic surveys. Mapping lithological or stratigraphic changes along the target structure requires an existing gradient in magnetic susceptibility. Mostly, this criterium is either not presented or the is weaker than the sensor's signal to noise ratio at a certain flying altitude. However, the folded structure in the study region shows high susceptibility changes in rock formations in high altitude regional magnetic surveys. In order to confirm that there are no missed structural elements in the target region, a UAV magnetic survey using a GEM Systems GSMP-35A potassium vapor magnetometer on Pioneer Exploration's UAV-MAG™ platform was conducted to exploit the structure in detail and compare the gain in spatial resolution from flying at lower altitude and with denser flight lines. The survey was conducted at 25 meters above ground level (AGL). Line spacing was set to 15 meters and a total of 550 kilometers was covered using an autonomous UAV. The collected data were compared to the regional airborne data which were collected at 150 meters AGL with a line spacing of 100 meters. Comparison revealed an anticline with plunge in the northeastern side of the gird. The analysis of the magnetic data, both total magnetic intensity and gradients, reveals that the UAV survey is able to resolve much smaller structures than the manned airborne survey. These details also match observations made in previous geological mapping missions.

Seismicity and tectonic relationships of the Nemaha Uplift in Oklahoma. Part V. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luza, K.V.; Lawson, J.E. Jr.

1983-02-01

The Nemaha Ridge is composed of a number of crustal blocks typically 3 to 5 miles (5 to 8 km) wide and 5 to 20 miles (8 to 32 km) long. Structure-contour maps prepared of the top of the Viola Formation (Ordovician), the base of the Pennsylvanian, and the top of the Oswego Formation (Middle Pennsylvanian) reveal a complex fault pattern associated with the Nemaha Uplift. This fault pattern is dominated by several discontinuous uplifts, such as the Oklahoma City, Lovell, Garber, and Crescent Uplifts. A detailed study of the Oklahoma City Uplift suggests that a number of the Nemaha-relatedmore » faults were developed in pre-Mississippian time. Many of these faults exhibit both increasing and decreasing displacements from early to late Paleozoic time. However, the displacement for most of the Oklahoma City faults took place between the end of Oswego time and the end of Hunton time. A lineament map was prepared for north-central Oklahoma. A detailed gravity map was prepared for the Kingfisher and Medford maxima. A total-intensity aeromagnetic map for the Enid and Oklahoma City 1/sup 0/ by 2/sup 0/ Quadrangles was prepared. A regional seismograph network was established to supplement existing seismological capability. A local earthquake-location program, named HYPERCUBE, was developed. From 1897 through 1976, Oklahoma has had approximately 128 known earthquakes. After the network became operational in late 1977, 255 additional earthquakes were detected in Oklahoma (through 1981). A study of earthquake distribution and intensity values in Oklahoma led to the development of a seismic-source map for Oklahoma and parts of the adjacent states. Six seismic-source zones were identified. For each zone except one, a magnitude-frequency relationship was determined.« less

Mapping of voltage sensor positions in resting and inactivated mammalian sodium channels by LRET

PubMed Central

Kubota, Tomoya; Durek, Thomas; Dang, Bobo; Finol-Urdaneta, Rocio K.; Craik, David J.; Kent, Stephen B. H.; French, Robert J.; Bezanilla, Francisco; Correa, Ana M.

2017-01-01

Voltage-gated sodium channels (Navs) play crucial roles in excitable cells. Although vertebrate Nav function has been extensively studied, the detailed structural basis for voltage-dependent gating mechanisms remain obscure. We have assessed the structural changes of the Nav voltage sensor domain using lanthanide-based resonance energy transfer (LRET) between the rat skeletal muscle voltage-gated sodium channel (Nav1.4) and fluorescently labeled Nav1.4-targeting toxins. We generated donor constructs with genetically encoded lanthanide-binding tags (LBTs) inserted at the extracellular end of the S4 segment of each domain (with a single LBT per construct). Three different Bodipy-labeled, Nav1.4-targeting toxins were synthesized as acceptors: β-scorpion toxin (Ts1)-Bodipy, KIIIA-Bodipy, and GIIIA-Bodipy analogs. Functional Nav-LBT channels expressed in Xenopus oocytes were voltage-clamped, and distinct LRET signals were obtained in the resting and slow inactivated states. Intramolecular distances computed from the LRET signals define a geometrical map of Nav1.4 with the bound toxins, and reveal voltage-dependent structural changes related to channel gating. PMID:28202723

Mapping of voltage sensor positions in resting and inactivated mammalian sodium channels by LRET.

PubMed

Kubota, Tomoya; Durek, Thomas; Dang, Bobo; Finol-Urdaneta, Rocio K; Craik, David J; Kent, Stephen B H; French, Robert J; Bezanilla, Francisco; Correa, Ana M

2017-03-07

Voltage-gated sodium channels (Navs) play crucial roles in excitable cells. Although vertebrate Nav function has been extensively studied, the detailed structural basis for voltage-dependent gating mechanisms remain obscure. We have assessed the structural changes of the Nav voltage sensor domain using lanthanide-based resonance energy transfer (LRET) between the rat skeletal muscle voltage-gated sodium channel (Nav1.4) and fluorescently labeled Nav1.4-targeting toxins. We generated donor constructs with genetically encoded lanthanide-binding tags (LBTs) inserted at the extracellular end of the S4 segment of each domain (with a single LBT per construct). Three different Bodipy-labeled, Nav1.4-targeting toxins were synthesized as acceptors: β-scorpion toxin (Ts1)-Bodipy, KIIIA-Bodipy, and GIIIA-Bodipy analogs. Functional Nav-LBT channels expressed in Xenopus oocytes were voltage-clamped, and distinct LRET signals were obtained in the resting and slow inactivated states. Intramolecular distances computed from the LRET signals define a geometrical map of Nav1.4 with the bound toxins, and reveal voltage-dependent structural changes related to channel gating.

Invasive plants transform the three-dimensional structure of rain forests

PubMed Central

Asner, Gregory P.; Hughes, R. Flint; Vitousek, Peter M.; Knapp, David E.; Kennedy-Bowdoin, Ty; Boardman, Joseph; Martin, Roberta E.; Eastwood, Michael; Green, Robert O.

2008-01-01

Biological invasions contribute to global environmental change, but the dynamics and consequences of most invasions are difficult to assess at regional scales. We deployed an airborne remote sensing system that mapped the location and impacts of five highly invasive plant species across 221,875 ha of Hawaiian ecosystems, identifying four distinct ways that these species transform the three-dimensional (3D) structure of native rain forests. In lowland to montane forests, three invasive tree species replace native midcanopy and understory plants, whereas one understory invader excludes native species at the ground level. A fifth invasive nitrogen-fixing tree, in combination with a midcanopy alien tree, replaces native plants at all canopy levels in lowland forests. We conclude that this diverse array of alien plant species, each representing a different growth form or functional type, is changing the fundamental 3D structure of native Hawaiian rain forests. Our work also demonstrates how an airborne mapping strategy can identify and track the spread of certain invasive plant species, determine ecological consequences of their proliferation, and provide detailed geographic information to conservation and management efforts. PMID:18316720

Geological Investigation and analysis in response to Earthquake Induced Landslide in West Sumatra

NASA Astrophysics Data System (ADS)

Karnawati, D.; Wilopo, W.; Salahudin, S.; Sudarno, I.; Burton, P.

2009-12-01

Substantial socio-economical loss occurred in response to the September 30. 2009 West Sumatra Earthquake with magnitude of 7.6. Damage of houses and engineered structures mostly occurred at the low land of alluvium sediments due to the ground amplification, whilst at the high land of mountain slopes several villages were buried by massive debris of rocks and soils. It was recorded that 1115 people died due to this disasters. Series of geological investigation was carried out by Geological Engineering Department of Gadjah Mada University, with the purpose to support the rehabilitation program. Based on this preliminary investigation it was identified that most of the house and engineered structural damages at the alluvial deposits mainly due to by the poor quality of such houses and engineered structures, which poorly resist the ground amplification, instead of due to the control of geological conditions. On the other hand, the existence and distribution of structural geology (faults and joints) at the mountaineous regions are significant in controlling the distribution of landslides, with the types of rock falls, debris flows and debris falls. Despite the landslide susceptibility mapping conducted by Geological Survey of Indonesia, more detailed investigation is required to be carried out in the region surrounding Maninjau Lake, in order to provide safer places for village relocation. Accordingly Gadjah Mada University in collaboration with the local university (Andalas University) as well as with the local Government of Agam Regency and the Geological Survey of Indonesia, serve the mission for conducting rather more detailed geological and landslide investigation. It is also crucial that the investigation (survey and mapping) on the social perception and expectation of local people living in this landslide susceptible area should also be carried out, to support the mitigation effort of any future potential earthquake induced landslides.

Loading effects beneath the Gotvand-e Olya Reservoir (south-west of Iran) deduced from ambient noise tomography

NASA Astrophysics Data System (ADS)

Ebrahimi, M.; Tatar, M.; Aoudia, A.; Guidarelli, M.

2018-01-01

In order to define the precise shallow velocity structure beneath the second largest dam reservoir in Iran and to understand the loading effects on the underlying crust, the shear wave velocity of the shallow structure beneath the Gotvand-e Olya (hereinafter referred to as Gotvand) reservoir is determined through the inversion of group velocities obtained from seismic ambient noise tomography, using continuous data from 10 stations of a local network, installed to monitor the induced seismicity in the region surrounding the Gotvand and Masjed Soleyman dams for potential hazard. We obtained Rayleigh waves from cross-correlation of waveforms recorded 10 months before and the same duration after impoundment of the Gotvand reservoir and calculated the group velocity from dispersion analysis in the period range 2-8 s. The group velocity dispersion curves are used to produce 2-D group velocity tomographic maps. The resulting tomographic maps at short periods are well correlated with subsurface geological features and delineate distinct low- and high-velocity zones separated mainly by geological boundaries. The 3-D shear wave velocity structure provides detailed information about the crustal features underneath the reservoir. The results are consistent with the lithology of the region, and attest that ambient noise tomography (ANT) can be used for detailed studies of the velocity structure and lithology at shallow depths using continuous data from a dense local seismic network. An increase of shear wave velocity is observed at the deep parts (4-6 km) underneath the reservoir after impoundment of the dam, which could be caused by the changes in rocks properties after impoundment. However, at shallow depths (2-4 km), a decrease of Vs velocity is observed that can be associated to the penetration of water after the impoundment.

Characterizing the Iron Wash fault: A fault line scarp in Utah

NASA Astrophysics Data System (ADS)

Kozaci, O.; Ostenaa, D.; Goodman, J.; Zellman, M.; Hoeft, J.; Sowers, J. M.; Retson, T.

2015-12-01

The Iron Wash fault (IWF) is an approximately 30 mile-long, NW-SE trending structure, oriented perpendicular to the San Rafael Monocline near Green River in Utah. IWF exhibits well-expressed geomorphic features such as a linear escarpment with consistently north side down displacement. The fault coincides with an abrupt change in San Rafael Monocline dip angle along its eastern margin. The IWF is exposed in incised drainages where Jurassic Navajo sandstone (oldest) and Lower Carmel Formation (old), are juxtaposed against Jurassic Entrada sandstone (younger) and Quaternary alluvium (youngest). To assess the recency of activity of the IWF we performed detailed geomorphic mapping and a paleoseismic trenching investigation. A benched trench was excavated across a Quaternary fluvial terrace remnant across the mapped trace of the IWF. The uppermost gravel units and overlying colluvium are exposed in the trench across the projection of the fault. In addition, we mapped the basal contact of the Quaternary gravel deposit in relation to the adjacent fault exposures in detail to show the geometry of the basal contact near and across the fault. We find no evidence of vertical displacement of these Quaternary gravels. A preliminary U-series date of calcite cementing unfaulted fluvial gravels and OSL dating of a sand lens within the unfaulted fluvial gravels yielded approximately 304,000 years and 78,000 years, respectively. These preliminary results of independent dating methods constrains the timing of last activity of the IWF to greater than 78,000 years before present suggesting that IWF not an active structure. Its distinct geomorphic expression is most likely the result of differential erosion, forming a fault-line scarp.

An integrated analysis of the effects of past land use on forest herb colonization at the landscape scale

USGS Publications Warehouse

Verheyen, K.; Guntenspergen, Glenn R.; Biesbrouck, B.; Hermy, M.

2003-01-01

A framework that summarizes the direct and indirect effects of past land use on forest herb recolonization is proposed, and used to analyse the colonization patterns of forest understorey herbaceous species in a 360-ha mixed forest, grassland and arable landscape in the Dijle river valley (central Belgium).Fine-scale distribution maps were constructed for 14 species. The species were mapped in 15 946 forest plots and outside forests (along parcel margins) in 5188 plots. Forest stands varied in age between 1 and more than 224 years. Detailed land-use history data were combined with the species distribution maps to identify species-specific colonization sources and to calculate colonization distances.The six most frequent species were selected for more detailed statistical analysis.Logistic regression models indicated that species frequency in forest parcels was a function of secondary forest age, distance from the nearest colonization source and their interaction. Similar age and distance effects were found within hedgerows.In 199 forest stands, data about soils, canopy structure and the cover of competitive species were collected. The relative importance of habitat quality and spatio-temporal isolation for the colonization of the forest herb species was quantified using structural equation modelling (SEM), within the framework proposed for the effects of past land use.The results of the SEM indicate that, except for the better colonizing species, the measured habitat quality variables are of minor importance in explaining colonization patterns, compared with the combination of secondary forest age and distance from colonization sources.Our results suggest the existence of a two-stage colonization process in which diaspore availability determines the initial pattern, which is affected by environmental sorting at later stages.

52. POWER HOUSE AREA, SANTA ANA NO. 2; DETAIL MAP ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

52. POWER HOUSE AREA, SANTA ANA NO. 2; DETAIL MAP OF SANTA ANA NO. 1 AND NO. 2 HYDROELECTRIC PROJECT, EXHIBIT K, APR. 30, 1945. SCE drawing no. 523691 (sheet no. 6; for filing with the Federal Power Commission). - Santa Ana River Hydroelectric System, Redlands, San Bernardino County, CA

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory.

PubMed

Niknam, Niloofar; Khakzad, Hamed; Arab, Seyed Shahriar; Naderi-Manesh, Hossein

2016-05-01

The integrative and cooperative nature of protein structure involves the assessment of topological and global features of constituent parts. Network concept takes complete advantage of both of these properties in the analysis concomitantly. High compatibility to structural concepts or physicochemical properties in addition to exploiting a remarkable simplification in the system has made network an ideal tool to explore biological systems. There are numerous examples in which different protein structural and functional characteristics have been clarified by the network approach. Here, we present an interactive and user-friendly Matlab-based toolbox, PDB2Graph, devoted to protein structure network construction, visualization, and analysis. Moreover, PDB2Graph is an appropriate tool for identifying critical nodes involved in protein structural robustness and function based on centrality indices. It maps critical amino acids in protein networks and can greatly aid structural biologists in selecting proper amino acid candidates for manipulating protein structures in a more reasonable and rational manner. To introduce the capability and efficiency of PDB2Graph in detail, the structural modification of Calmodulin through allosteric binding of Ca(2+) is considered. In addition, a mutational analysis for three well-identified model proteins including Phage T4 lysozyme, Barnase and Ribonuclease HI, was performed to inspect the influence of mutating important central residues on protein activity. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Topographical Mapping in Drosophila Central Complex Network and Its Signal Routing

PubMed Central

Chang, Po-Yen; Su, Ta-Shun; Shih, Chi-Tin; Lo, Chung-Chuan

2017-01-01

Neural networks regulate brain functions by routing signals. Therefore, investigating the detailed organization of a neural circuit at the cellular levels is a crucial step toward understanding the neural mechanisms of brain functions. To study how a complicated neural circuit is organized, we analyzed recently published data on the neural circuit of the Drosophila central complex, a brain structure associated with a variety of functions including sensory integration and coordination of locomotion. We discovered that, except for a small number of “atypical” neuron types, the network structure formed by the identified 194 neuron types can be described by only a few simple mathematical rules. Specifically, the topological mapping formed by these neurons can be reconstructed by applying a generation matrix on a small set of initial neurons. By analyzing how information flows propagate with or without the atypical neurons, we found that while the general pattern of signal propagation in the central complex follows the simple topological mapping formed by the “typical” neurons, some atypical neurons can substantially re-route the signal pathways, implying specific roles of these neurons in sensory signal integration. The present study provides insights into the organization principle and signal integration in the central complex. PMID:28443014

Swath sonar mapping of Earth's submarine plate boundaries

NASA Astrophysics Data System (ADS)

Carbotte, S. M.; Ferrini, V. L.; Celnick, M.; Nitsche, F. O.; Ryan, W. B. F.

2014-12-01

The recent loss of Malaysia Airlines flight MH370 in an area of the Indian Ocean where less than 5% of the seafloor is mapped with depth sounding data (Smith and Marks, EOS 2014) highlights the striking lack of detailed knowledge of the topography of the seabed for much of the worlds' oceans. Advances in swath sonar mapping technology over the past 30 years have led to dramatic improvements in our capability to map the seabed. However, the oceans are vast and only an estimated 10% of the seafloor has been mapped with these systems. Furthermore, the available coverage is highly heterogeneous and focused within areas of national strategic priority and community scientific interest. The major plate boundaries that encircle the globe, most of which are located in the submarine environment, have been a significant focus of marine geoscience research since the advent of swath sonar mapping. While the location of these plate boundaries are well defined from satellite-derived bathymetry, significant regions remain unmapped at the high-resolutions provided by swath sonars and that are needed to study active volcanic and tectonic plate boundary processes. Within the plate interiors, some fossil plate boundary zones, major hotspot volcanoes, and other volcanic provinces have been the focus of dedicated research programs. Away from these major tectonic structures, swath mapping coverage is limited to sparse ocean transit lines which often reveal previously unknown deep-sea channels and other little studied sedimentary structures not resolvable in existing low-resolution global compilations, highlighting the value of these data even in the tectonically quiet plate interiors. Here, we give an overview of multibeam swath sonar mapping of the major plate boundaries of the globe as extracted from public archives. Significant quantities of swath sonar data acquired from deep-sea regions are in restricted-access international archives. Open access to more of these data sets would enable global comparisons of plate boundary structures and processes and could facilitate a more coordinated approach to optimizing the future acquisition of these high-value data by the global research community.

Relationships between ground and airborne gamma-ray spectrometric survey data, North Ras Millan, Southern Sinai Peninsula, Egypt.

PubMed

Youssef, Mohamed A S

2016-02-01

In the last decades of years, there was considerable growth in the use of airborne gamma-ray spectrometry. With this growth, there was an increasing need to standardize airborne measurements, so that they can be independent of survey parameters. Acceptable procedures were developed for converting airborne to ground gamma-ray spectrometric measurements of total-count intensity as well as, potassium, equivalent uranium and equivalent thorium concentrations, due to natural sources of radiation. The present study aims mainly to establish relationships between ground and airborne gamma-ray spectrometric data, North Ras Millan, Southern Sinai Peninsula, Egypt. The relationships between airborne and ground gamma-ray spectrometric data were deduced for the original and separated rock units in the study area. Various rocks in the study area, represented by Quaternary Wadi sediments, Cambro-Ordovician sandstones, basic dykes and granites, are shown on the detailed geologic map. The structures are displayed, which located on the detailed geologic map, are compiled from the integration of previous geophysical and surface geological studies. Copyright © 2015 Elsevier Ltd. All rights reserved.

Bedrock Geologic Map of the Old Lyme Quadrangle, New London and Middlesex Counties, Connecticut

USGS Publications Warehouse

Walsh, Gregory J.; Scott, Robert B.; Aleinikoff, John N.; Armstrong, Thomas R.

2009-01-01

The bedrock geology of the Old Lyme quadrangle consists of Neoproterozoic and Permian gneisses and granites of the Gander and Avalon terranes, Silurian metasedimentary rocks of the Merrimack terrane, and Silurian to Devonian metasedimentary rocks of uncertain origin. The Avalon terrane rocks crop out within the Selden Neck block, and the Gander terrane rocks crop out within the Lyme dome. The Silurian to Devonian rocks crop out between these two massifs. Previous mapping in the Old Lyme quadrangle includes the work by Lawrence Lundgren, Jr. Lundgren's work provides an excellent resource for rock descriptions and detailed modal analyses of rock units that will not be duplicated in this current report. New research that was not covered in detail by Lundgren is the focus of this report and includes (1) evaluation of the rocks in the core of the Lyme dome in an effort to subdivide units in this area; (2) structural analysis of foliations and folds in and around the Lyme dome; (3) geochronology of selected units within the Lyme dome; and (4) analysis of joints and the fracture properties of the rocks.

High-performance liquid chromatography-mass spectrometry for mapping and sequencing glycosaminoglycan-derived oligosaccharides

PubMed Central

Volpi, Nicola; Linhardt, Robert J

2012-01-01

Glycosaminoglycans (GAGs) have proven to be very difficult to analyze and characterize because of their high negative charge density, polydispersity and sequence heterogeneity. As the specificity of the interactions between GAGs and proteins results from the structure of these polysaccharides, an understanding of GAG structure is essential for developing a structure–activity relationship. Electrospray ionization (ESI) mass spectrometry (MS) is particularly promising for the analysis of oligosaccharides chemically or enzymatically generated by GAGs because of its relatively soft ionization capacity. Furthermore, on-line high-performance liquid chromatography (HPLC)-MS greatly enhances the characterization of complex mixtures of GAG-derived oligosaccharides, providing important structural information and affording their disaccharide composition. A detailed protocol for producing oligosaccharides from various GAGs, using controlled, specific enzymatic or chemical depolymerization, is presented, together with their HPLC separation, using volatile reversed-phase ion-pairing reagents and on-line ESI-MS structural identification. This analysis provides an oligosaccharide map together with sequence information from a reading frame beginning at the nonreducing end of the GAG chains. The preparation of oligosaccharides can be carried out in 10 h, with subsequent HPLC analysis in 1–2 h and HPLC-MS analysis taking another 2 h. PMID:20448545

Retinal Structure of Birds of Prey Revealed by Ultra-High Resolution Spectral-Domain Optical Coherence Tomography

PubMed Central

Ruggeri, Marco; Major, James C.; McKeown, Craig; Knighton, Robert W.; Puliafito, Carmen A.

2010-01-01

Purpose. To reveal three-dimensional (3-D) information about the retinal structures of birds of prey in vivo. Methods. An ultra-high resolution spectral-domain optical coherence tomography (SD-OCT) system was built for in vivo imaging of retinas of birds of prey. The calibrated imaging depth and axial resolution of the system were 3.1 mm and 2.8 μm (in tissue), respectively. 3-D segmentation was performed for calculation of the retinal nerve fiber layer (RNFL) map. Results. High-resolution OCT images were obtained of the retinas of four species of birds of prey: two diurnal hawks (Buteo platypterus and Buteo brachyurus) and two nocturnal owls (Bubo virginianus and Strix varia). These images showed the detailed retinal anatomy, including the retinal layers and the structure of the deep and shallow foveae. The calculated thickness map showed the RNFL distribution. Traumatic injury to one bird's retina was also successfully imaged. Conclusions. Ultra-high resolution SD-OCT provides unprecedented high-quality 2-D and 3-D in vivo visualization of the retinal structures of birds of prey. SD-OCT is a powerful imaging tool for vision research in birds of prey. PMID:20554605

Geographic information systems (GIS) spatial data compilation of geodynamic, tectonic, metallogenic, mineral deposit, and geophysical maps and associated descriptive data for northeast Asia

USGS Publications Warehouse

Naumova, Vera V.; Patuk, Mikhail I.; Kapitanchuk, Marina Yu.; Nokleberg, Warren J.; Khanchuk, Alexander I.; Parfenov, Leonid M.; Rodionov, Sergey M.; Miller, Robert J.; Diggles, Michael F.

2006-01-01

This is the online version of a CD-ROM publication. It contains all of the data that are on the disc but extra files have been removed: index files, software installers, and Windows autolaunch files. The purpose of this publication is to provide a high-quality spatial data compilation (Geographical Information System or GIS) of geodynamic, mineral deposit, and metallogenic belt maps, and descriptive data for Northeast Asia for customers and users. This area consists of Eastern Siberia, Russian Far East, Mongolia, northern China, South Korea, and Japan. The GIS compilation contains integrated spatial data for: (1) a geodynamics map at a scale of 1:5,000,000; (2) a mineral deposit location map; (3) metallogenic belt maps; (4) detailed descriptions of geologic units, including tectonostratigraphic terranes, cratons, major melange zones, and overlap assemblages, with references; (5) detailed descriptions of metallogenic belts with references; (6) detailed mineral deposit descriptions with references; and (7) page-size stratigraphic columns for major terranes.

Land use inventory of Salt Lake County, Utah from color infrared aerial photography 1982

NASA Technical Reports Server (NTRS)

Price, K. P.; Willie, R. D.; Wheeler, D. J.; Ridd, M. K.

1983-01-01

The preparation of land use maps of Salt Lake County, Utah from high altitude color infrared photography is described. The primary purpose of the maps is to aid in the assessment of the effects of urban development on the agricultural land base and water resources. The first stage of map production was to determine the categories of land use/land cover and the mapping unit detail. The highest level of interpretive detail was given to the land use categories found in the agricultural or urbanized portions of the county; these areas are of primary interest with regard to the consumptive use of water from surface streams and wells. A slightly lower level of mapping detail was given to wetland environments; areas to which water is not purposely diverted by man but which have a high consumptive rate of water use. Photos were interpreted on the basis of color, tone, texture, and pattern, together with features of the topographic, hydrologic, and ecological context.

NV PFA Regional Data

DOE Data Explorer

James Faulds

2015-10-28

This project focused on defining geothermal play fairways and development of a detailed geothermal potential map of a large transect across the Great Basin region (96,000 km2), with the primary objective of facilitating discovery of commercial-grade, blind geothermal fields (i.e. systems with no surface hot springs or fumaroles) and thereby accelerating geothermal development in this promising region. Data included in this submission consists of: structural settings (target areas, recency of faulting, slip and dilation potential, slip rates, quality), regional-scale strain rates, earthquake density and magnitude, gravity data, temperature at 3 km depth, permeability models, favorability models, degree of exploration and exploration opportunities, data from springs and wells, transmission lines and wilderness areas, and published maps and theses for the Nevada Play Fairway area.

LANDSAT (ERTS) used as a basis for geological volcanological mapping in the central Andes

NASA Technical Reports Server (NTRS)

Kussmaul, S.; Brockman, C. E.

1977-01-01

LANDSAT images of the central Andes (N-Chile, W-Bolivia) were effectively used for volcanological mapping of an area about 160,000 km. The map shown exhibits more and better details than the older small scale geological maps of that area. Even on a scale of 1:1,000,000 details greater than 200 m in size are recognizable. The interpretation of LANDSAT images makes it possible to establish relative age sequences of strato-volcanoes. Finally, the images will also be helpful in prospecting for mineral deposits and geothermal sources.

Mars gravity: high-resolution results from viking orbiter 2.

PubMed

Sjogren, W L

1979-03-09

Doppler radio-tracking data have provided detailed measurements for a martian gravity map extending from 30 degrees S to 65 degrees N in latitude and through 360 degrees of longitude. The feature resolution is approximately 500 kilometers, revealing a huge anomaly associated with Olympus Mons, a mascon in Isidis Planitia, and other anomalies correlated with volcanic structure. Olympus Mons has been modeled with a 600-kilometer surface disk having a mass of 8.7 x 1021grams.

Improved Visualization of Glaucomatous Retinal Damage Using High-speed Ultrahigh-Resolution Optical Coherence Tomography

PubMed Central

Mumcuoglu, Tarkan; Wollstein, Gadi; Wojtkowski, Maciej; Kagemann, Larry; Ishikawa, Hiroshi; Gabriele, Michelle L.; Srinivasan, Vivek; Fujimoto, James G.; Duker, Jay S.; Schuman, Joel S.

2009-01-01

Purpose To test if improving optical coherence tomography (OCT) resolution and scanning speed improves the visualization of glaucomatous structural changes as compared with conventional OCT. Design Prospective observational case series. Participants Healthy and glaucomatous subjects in various stages of disease. Methods Subjects were scanned at a single visit with commercially available OCT (StratusOCT) and high-speed ultrahigh-resolution (hsUHR) OCT. The prototype hsUHR OCT had an axial resolution of 3.4 μm (3 times higher than StratusOCT), with an A-scan rate of 24 000 hertz (60 times faster than StratusOCT). The fast scanning rate allowed the acquisition of novel scanning patterns such as raster scanning, which provided dense coverage of the retina and optic nerve head. Main Outcome Measures Discrimination of retinal tissue layers and detailed visualization of retinal structures. Results High-speed UHR OCT provided a marked improvement in tissue visualization as compared with StratusOCT. This allowed the identification of numerous retinal layers, including the ganglion cell layer, which is specifically prone to glaucomatous damage. Fast scanning and the enhanced A-scan registration properties of hsUHR OCT provided maps of the macula and optic nerve head with unprecedented detail, including en face OCT fundus images and retinal nerve fiber layer thickness maps. Conclusion High-speed UHR OCT improves visualization of the tissues relevant to the detection and management of glaucoma. PMID:17884170

Evaluation of ERTS-1 imagery for mapping Quaternary deposits and landforms in the Great Plains and Midwest

NASA Technical Reports Server (NTRS)

Morrison, R. B. (Principal Investigator); Hallberg, G. R.

1973-01-01

The author has identified the following significant results. Maps of 1:1 million scale exemplifying the first phase of investigation were prepared for ten study areas (mostly 1 deg x 2 deg in area): 2 in Kansas, 1 in Missouri-Kansas, 2 in Nebraska, 1 in South Dakota, 3 in Illinois, and 1 in Iowa-Illinois (a total of 13 such maps, covering about 97,000 sq. mi., since the start of the project). Collection of all pertinent published geologic-terrain data also has been completed for all the study areas for which these first-phase maps have been made. The ground truth data are being used in combination with additional interpretation of the repetitive ERTS-1 images of most of these study areas to prepare enhanced information maps at 1:500,000. For areas that have not been mapped at 1:500,000 or larger scales, the maps will provide the first moderately detailed information on landform features and surficial materials. Much of the information mapped is significant for exploration and development of ground water (and locally petroleum) and for applications in engineering and environmental geology, and land use patterns as indicated by tone and texture on the images. Numerous moraines have been identified; also, the trends of parts of ancient filled valleys have been identified. Valley alinement appears controlled by faults or other structural lineaments.

Semiautomated model building for RNA crystallography using a directed rotameric approach.

PubMed

Keating, Kevin S; Pyle, Anna Marie

2010-05-04

Structured RNA molecules play essential roles in a variety of cellular processes; however, crystallographic studies of such RNA molecules present a large number of challenges. One notable complication arises from the low resolutions typical of RNA crystallography, which results in electron density maps that are imprecise and difficult to interpret. This problem is exacerbated by the lack of computational tools for RNA modeling, as many of the techniques commonly used in protein crystallography have no equivalents for RNA structure. This leads to difficulty and errors in the model building process, particularly in modeling of the RNA backbone, which is highly error prone due to the large number of variable torsion angles per nucleotide. To address this, we have developed a method for accurately building the RNA backbone into maps of intermediate or low resolution. This method is semiautomated, as it requires a crystallographer to first locate phosphates and bases in the electron density map. After this initial trace of the molecule, however, an accurate backbone structure can be built without further user intervention. To accomplish this, backbone conformers are first predicted using RNA pseudotorsions and the base-phosphate perpendicular distance. Detailed backbone coordinates are then calculated to conform both to the predicted conformer and to the previously located phosphates and bases. This technique is shown to produce accurate backbone structure even when starting from imprecise phosphate and base coordinates. A program implementing this methodology is currently available, and a plugin for the Coot model building program is under development.

Structural and functional changes across the visual cortex of a patient with visual form agnosia.

PubMed

Bridge, Holly; Thomas, Owen M; Minini, Loredana; Cavina-Pratesi, Cristiana; Milner, A David; Parker, Andrew J

2013-07-31

Loss of shape recognition in visual-form agnosia occurs without equivalent losses in the use of vision to guide actions, providing support for the hypothesis of two visual systems (for "perception" and "action"). The human individual DF received a toxic exposure to carbon monoxide some years ago, which resulted in a persisting visual-form agnosia that has been extensively characterized at the behavioral level. We conducted a detailed high-resolution MRI study of DF's cortex, combining structural and functional measurements. We present the first accurate quantification of the changes in thickness across DF's occipital cortex, finding the most substantial loss in the lateral occipital cortex (LOC). There are reduced white matter connections between LOC and other areas. Functional measures show pockets of activity that survive within structurally damaged areas. The topographic mapping of visual areas showed that ordered retinotopic maps were evident for DF in the ventral portions of visual cortical areas V1, V2, V3, and hV4. Although V1 shows evidence of topographic order in its dorsal portion, such maps could not be found in the dorsal parts of V2 and V3. We conclude that it is not possible to understand fully the deficits in object perception in visual-form agnosia without the exploitation of both structural and functional measurements. Our results also highlight for DF the cortical routes through which visual information is able to pass to support her well-documented abilities to use visual information to guide actions.

Magnetic mapping for structural geology and geothermal exploration in Guadeloupe, Lesser Antilles

NASA Astrophysics Data System (ADS)

Mercier de Lépinay, jeanne; munschy, marc; geraud, yves; diraison, marc; navelot, vivien; verati, christelle; corsini, michel; lardeaux, jean marc; favier, alexiane

2017-04-01

This work is implemented through the GEOTREF program which benefits from the support of both the ADEME and the French public funds "Investments for the future". The program focuses on the exploration for geothermal resources in Guadeloupe, Lesser Antilles, where a geothermal power plant is in production since 1986 (Bouillante, Basse Terre). In Les Saintes archipelago, in the south of Guadeloupe, the outcrop analysis of Terre-de-Haut Island allows to point out an exhumed geothermal paleo-system that is thought to be an analogue of the Bouillante active geothermal system. We show that a detailed marine magnetic survey with a quantitative interpretation can bring information about the offshore structures around Les Saintes archipelago in order to extend the geological limits and structural elements. A similar survey and workflow is also conducted offshore Basse-Terre where more geophysical data is already available. In order to correctly link the offshore and onshore structures, the magnetic survey must be close enough to the shoreline and sufficiently detailed to correctly outline the tectonic structures. An appropriate solution for such a survey is to use a three component magnetometer aboard a speedboat. Such a boat allows more navigation flexibility than a classic oceanic vessel towing a magnetometer; it can sail at higher speed on calm seas and closer to the shoreline. This kind of magnetic acquisition is only viable because the magnetic effect of the ship can be compensated using the same algorithms than those used for airborne magnetometry. The use of potential field transforms allows a large variety of structures to be highlighted, providing insights to build a general understanding of the nature and distribution of the magnetic sources. In particular, we use the tilt angle operator to better identify the magnetic lineaments offshore in order to compare them to the faults identified onshore during the outcrop analysis. All the major faults and fractures directions observed onshore are well represented through the magnetic lineaments except the main N90-110 system which is almost inexistent. We also invert the magnetic data to obtain a magnetization intensity map. This inversion assumes a constant depth magnetized layer and a constant magnetization's direction. The calculated variations on the map are consistent with on-field measurements showing that hydrothermalized rocks have a lower magnetic susceptibility (2 orders of magnitude) than fresh ones. Our interpretation and the onshore structural and petrographic analysis allow us to recognize the offshore extension of the hydrothermalized area, as well as different structural orientations.

Direct Scaling of Leaf-Resolving Biophysical Models from Leaves to Canopies

NASA Astrophysics Data System (ADS)

Bailey, B.; Mahaffee, W.; Hernandez Ochoa, M.

2017-12-01

Recent advances in the development of biophysical models and high-performance computing have enabled rapid increases in the level of detail that can be represented by simulations of plant systems. However, increasingly detailed models typically require increasingly detailed inputs, which can be a challenge to accurately specify. In this work, we explore the use of terrestrial LiDAR scanning data to accurately specify geometric inputs for high-resolution biophysical models that enables direct up-scaling of leaf-level biophysical processes. Terrestrial LiDAR scans generate "clouds" of millions of points that map out the geometric structure of the area of interest. However, points alone are often not particularly useful in generating geometric model inputs, as additional data processing techniques are required to provide necessary information regarding vegetation structure. A new method was developed that directly reconstructs as many leaves as possible that are in view of the LiDAR instrument, and uses a statistical backfilling technique to ensure that the overall leaf area and orientation distribution matches that of the actual vegetation being measured. This detailed structural data is used to provide inputs for leaf-resolving models of radiation, microclimate, evapotranspiration, and photosynthesis. Model complexity is afforded by utilizing graphics processing units (GPUs), which allows for simulations that resolve scales ranging from leaves to canopies. The model system was used to explore how heterogeneity in canopy architecture at various scales affects scaling of biophysical processes from leaves to canopies.

Bilateral accessory breast tissue of the vulva: a case report introducing a novel labiaplasty technique.

PubMed

Wagner, I Janelle; Damitz, Lynn A; Carey, Erin; Zolnoun, Denniz

2013-05-01

We present the case of a 23-year-old female with bilateral ectopic breast tissue of the vulva, the repair of which necessitated a novel labiaplasty technique. Labiaplasty is becoming an increasingly frequent cosmetic procedure, and the popularity of brief didactic labiaplasty courses has risen in response to consumer demand. There is a paucity of detailed anatomic description of female sensory innervation patterns to the clitoris and surrounding structures. This places patients at risk for denervation of clitoral structures during labiaplasty procedures. Our novel technique proposes a method of individualized patient neurosensory mapping preoperatively, which allows for surgical planning to avoid injury to the sensory branches of the dorsal clitoral nerve. A 23-year-old female presented with bilateral vulvar masses that involved the clitoral complex, which had first become apparent during the second trimester of pregnancy, and failed to resolve in the postpartum period. We describe the preoperative planning and intraoperative approach and dissection to labiaplasty in this patient, which was complex given the size of the masses, and specifically designed to avoid injury to sensory branches of the dorsal clitoral nerve. As labiaplasty becomes more common, it is important to approach labiaplasty patients with a detailed understanding of the sensory innervation of the clitoris and surrounding structures, to avoid nerve injury and resultant sexual dysfunction. Traditional labiaplasty approaches may violate the sensory innervation patterns of the clitoral region, thus causing a sensory loss that affects patient sexual function. Our novel approach to preoperative clitoral nerve sensory mapping provides an alternative method of labiaplasty that may avoid denervation injury.

QUIESCENT PROMINENCES IN THE ERA OF ALMA: SIMULATED OBSERVATIONS USING THE 3D WHOLE-PROMINENCE FINE STRUCTURE MODEL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gunár, Stanislav; Heinzel, Petr; Mackay, Duncan H.

2016-12-20

We use the detailed 3D whole-prominence fine structure model to produce the first simulated high-resolution ALMA observations of a modeled quiescent solar prominence. The maps of synthetic brightness temperature and optical thickness shown in the present paper are produced using a visualization method for synthesis of the submillimeter/millimeter radio continua. We have obtained the simulated observations of both the prominence at the limb and the filament on the disk at wavelengths covering a broad range that encompasses the full potential of ALMA. We demonstrate here extent to which the small-scale and large-scale prominence and filament structures will be visible inmore » the ALMA observations spanning both the optically thin and thick regimes. We analyze the relationship between the brightness and kinetic temperature of the prominence plasma. We also illustrate the opportunities ALMA will provide for studying the thermal structure of the prominence plasma from the cores of the cool prominence fine structure to the prominence–corona transition region. In addition, we show that detailed 3D modeling of entire prominences with their numerous fine structures will be important for the correct interpretation of future ALMA observations of prominences.« less

Mapping Urban Tree Canopy Coverage and Structure using Data Fusion of High Resolution Satellite Imagery and Aerial Lidar

NASA Astrophysics Data System (ADS)

Elmes, A.; Rogan, J.; Williams, C. A.; Martin, D. G.; Ratick, S.; Nowak, D.

2015-12-01

Urban tree canopy (UTC) coverage is a critical component of sustainable urban areas. Trees provide a number of important ecosystem services, including air pollution mitigation, water runoff control, and aesthetic and cultural values. Critically, urban trees also act to mitigate the urban heat island (UHI) effect by shading impervious surfaces and via evaporative cooling. The cooling effect of urban trees can be seen locally, with individual trees reducing home HVAC costs, and at a citywide scale, reducing the extent and magnitude of an urban areas UHI. In order to accurately model the ecosystem services of a given urban forest, it is essential to map in detail the condition and composition of these trees at a fine scale, capturing individual tree crowns and their vertical structure. This paper presents methods for delineating UTC and measuring canopy structure at fine spatial resolution (<1m). These metrics are essential for modeling the HVAC benefits from UTC for individual homes, and for assessing the ecosystem services for entire urban areas. Such maps have previously been made using a variety of methods, typically relying on high resolution aerial or satellite imagery. This paper seeks to contribute to this growing body of methods, relying on a data fusion method to combine the information contained in high resolution WorldView-3 satellite imagery and aerial lidar data using an object-based image classification approach. The study area, Worcester, MA, has recently undergone a large-scale tree removal and reforestation program, following a pest eradication effort. Therefore, the urban canopy in this location provides a wide mix of tree age class and functional type, ideal for illustrating the effectiveness of the proposed methods. Early results show that the object-based classifier is indeed capable of identifying individual tree crowns, while continued research will focus on extracting crown structural characteristics using lidar-derived metrics. Ultimately, the resulting fine resolution UTC map will be compared with previously created UTC maps of the same area but for earlier dates, producing a canopy change map corresponding to the Worcester area tree removal and replanting effort.

Helicopter Electromagnetic and Magnetic Surveys of the Upper and Middle Zones of the Trinity Aquifer, Uvalde and Bexar Counties, Texas

NASA Astrophysics Data System (ADS)

Smith, D. V.; Blome, C. D.; Smith, B. D.; Clark, A. C.

2009-12-01

Detailed helicopter electromagnetic and magnetic surveys (HEM) were conducted in northern Uvalde and Bexar Counties, Texas, as part of a geologic mapping and hydrologic study being conducted by the U.S. Geological Survey (USGS). The aquifers of the Lower Cretaceous Trinity Group (collectively termed the Trinity aquifer) are an important regional water source in the Hill Country of south-central Texas. Rock units comprising the middle aquifer segment are represented by the lower member of the Glen Rose Formation and the Cow Creek Limestone and Hensel Sandstone members of the Pearsall Formation. The lower Trinity hydrologic segment is composed of the Hosston and Sligo Limestones and is confined by the overlying Hammet Shale. Karst features commonly occur in the Trinity Group because of the dissolution of gypsum- and anhydrite-rich beds. Faults and fractures have not been sufficiently analyzed to evaluate the effects these structures have on inter- and intra-formational groundwater flow. The survey in the north Seco Creek area covers the recharge zone of the Edwards aquifer and part of the catchment zone composed of the upper Trinity segment. These data augment the scant geologic mapping in the area by delineating faults, collapse features, and hydrostratigraphic units. The HEM survey in northern Bexar County covered the Camp Stanley Storage Activity, the Camp Bullis Training Site, parts of the recharge zone of the Edwards aquifer south of the military bases, and part of Cibolo Creek to the north. Basic line spacing was 200 meters using six frequencies. In-fill lines were flown with a spacing of 100 meters in the central part of the study area to better resolve geologic structures and karst features. The data processing took into account high EM interference and cultural noise. Apparent resistivity (ρa) maps are used in interpretation of geologic structures, trends, and in the identification of electrical properties of lithologic units. The ρa maps show the northwest trending faults of the Balcones fault zone as well as oblique trending cross faults. Though many of the major faults had been identified in previous geologic mapping, other possibly significant faults were not recognized from traditional techniques. High resistivities within the Glen Rose Limestone are indicative of more competent lithologies which have a greater limestone content. During the evolution of the groundwater system the limestone units are most likely to have developed secondary porosity conducive to establishing flow paths. In contrast, lower resistivities are associated with clay, marl, and mudstone units which have lower porosity and permeability. Resistivity depth sections along flight lines and 3D visualization of resistive zones define reefal structures in the middle Trinity segment. Detailed hydrogeologic mapping and HEM depth modeling illustrate the approach to be taken in future studies of the Trinity.

Integration of ground-based laser scanner and aerial digital photogrammetry for topographic modelling of Vesuvio volcano

NASA Astrophysics Data System (ADS)

Pesci, Arianna; Fabris, Massimo; Conforti, Dario; Loddo, Fabiana; Baldi, Paolo; Anzidei, Marco

2007-05-01

This work deals with the integration of different surveying methodologies for the definition of very accurate Digital Terrain Models (DTM) and/or Digital Surface Models (DSM): in particular, the aerial digital photogrammetry and the terrestrial laser scanning were used to survey the Vesuvio volcano, allowing the total coverage of the internal cone and surroundings (the whole surveyed area was about 3 km × 3 km). The possibility to reach a very high precision, especially from the laser scanner data set, allowed a detailed description of the morphology of the volcano. The comparisons of models obtained in repeated surveys allow a detailed map of residuals providing a data set that can be used for detailed studies of the morphological evolution. Moreover, the reflectivity information, highly correlated to materials properties, allows for the measurement and quantification of some morphological variations in areas where structural discontinuities and displacements are present.

Exploitation of ERTS-1 imagery utilizing snow enhancement techniques

NASA Technical Reports Server (NTRS)

Wobber, F. J.; Martin, K. R.

1973-01-01

Photogeological analysis of ERTS-simulation and ERTS-1 imagery of snowcovered terrain within the ERAP Feather River site and within the New England (ERTS) test area provided new fracture detail which does not appear on available geological maps. Comparative analysis of snowfree ERTS-1 images has demonstrated that MSS Bands 5 and 7 supply the greatest amount of geological fracture detail. Interpretation of the first snow-covered ERTS-1 images in correlation with ground snow depth data indicates that a heavy blanket of snow (more than 9 inches) accentuates major structural features while a light "dusting", (less than 1 inch) accentuates more subtle topographic expressions. An effective mail-based method for acquiring timely ground-truth (snowdepth) information was established and provides a ready correlation of fracture detail with snow depth so as to establish the working limits of the technique. The method is both efficient and inexpensive compared with the cost of similarly scaled direct field observations.

Development of an intervention program to increase effective behaviours by patients and clinicians in psychiatric services: Intervention Mapping study.

PubMed

Koekkoek, Bauke; van Meijel, Berno; Schene, Aart; Hutschemaekers, Giel

2010-10-25

Health clinicians perceive certain patients as 'difficult' across all settings, including mental health care. In this area, patients with non-psychotic disorders that become long-term care users may be perceived as obstructing their own recovery or seeking secondary gain. This negative perception of patients results in ineffective responses and low-quality care by health clinicians. Using the concept of illness behaviour, this paper describes the development, implementation, and planned evaluation of a structured intervention aimed at prevention and management of ineffective behaviours by long-term non-psychotic patients and their treating clinicians. The principles of Intervention Mapping were applied to guide the development, implementation, and planned evaluation of the intervention. Qualitative (individual and group interviews), quantitative (survey), and mixed methods (Delphi-procedure) research was used to gain a broad perspective of the problem. Empirical findings, theoretical models, and existing evidence were combined to construct a program tailored to the needs of the target groups. A structured program to increase effective illness behaviour in long-term non-psychotic patients and effective professional behaviour in their treating clinicians was developed, consisting of three subsequent stages and four substantial components, that is described in detail. Implementation took place and evaluation of the intervention is being carried out. Intervention Mapping proved to be a suitable method to develop a structured intervention for a multi-faceted problem in mental health care.

Object-Based Classification of Ikonos Imagery for Mapping Large-Scale Vegetation Communities in Urban Areas.

PubMed

Mathieu, Renaud; Aryal, Jagannath; Chong, Albert K

2007-11-20

Effective assessment of biodiversity in cities requires detailed vegetation maps.To date, most remote sensing of urban vegetation has focused on thematically coarse landcover products. Detailed habitat maps are created by manual interpretation of aerialphotographs, but this is time consuming and costly at large scale. To address this issue, wetested the effectiveness of object-based classifications that use automated imagesegmentation to extract meaningful ground features from imagery. We applied thesetechniques to very high resolution multispectral Ikonos images to produce vegetationcommunity maps in Dunedin City, New Zealand. An Ikonos image was orthorectified and amulti-scale segmentation algorithm used to produce a hierarchical network of image objects.The upper level included four coarse strata: industrial/commercial (commercial buildings),residential (houses and backyard private gardens), vegetation (vegetation patches larger than0.8/1ha), and water. We focused on the vegetation stratum that was segmented at moredetailed level to extract and classify fifteen classes of vegetation communities. The firstclassification yielded a moderate overall classification accuracy (64%, κ = 0.52), which ledus to consider a simplified classification with ten vegetation classes. The overallclassification accuracy from the simplified classification was 77% with a κ value close tothe excellent range (κ = 0.74). These results compared favourably with similar studies inother environments. We conclude that this approach does not provide maps as detailed as those produced by manually interpreting aerial photographs, but it can still extract ecologically significant classes. It is an efficient way to generate accurate and detailed maps in significantly shorter time. The final map accuracy could be improved by integrating segmentation, automated and manual classification in the mapping process, especially when considering important vegetation classes with limited spectral contrast.

New mapping of Radlandi basin and detailed analysis of its inner plains

NASA Astrophysics Data System (ADS)

Minelli, Francesco; Giorgetti, Carolina; Mondini, Alessandro; Pauselli, Cristina; Mancinelli, Paolo

2013-04-01

NEW MAPPING OF RADITLADI BASIN AND DETAILED ANALYSIS OF ITS INNER PLAINS. Francesco Minelli 1, Carolina Giorgetti 1, Alessandro C. Mondini 2, Cristina Pauselli 1, Paolo Mancinelli1. 1 Gruppo di Geologia Strutturale e Geofisica (GSG), Dipartimento di Scienze della Terra, Università degli Studi di Perugia, 06123, Perugia, Italy . Email: minelli91@yahoo.it. 2 CNR IRPI Perugia, 06123, Perugia. Introduction: The Raditladi basin is a large peak-ring impact crater discovered during the MESSENGER (MErcury Surface, Space ENvironment, GEochemistry, and Ranging) first flyby of Mercury in January 2008 [1]. The Raditladi basin is relatively young [2], and the study of the internal structures give an indication of the processes that acted recently in Mercury's geological history. Geological mapping: We first present the geological mapping of Raditladi crater. In the map we defined different sub-units on the base of previous studies [4][5] and surface morphology and reflectance. Through a GIS software we associated a polygonal layer to each sub-unit, this allowed to distinguish nine different layers. Due to the similarities with the Rachmaninoff basin, to define sub-units mapped on Raditladi, we adopted Rachmaninoff crater's units definitions made by Marchi et al. (2011) [4]. Structures analysis : We also mapped secondary structures consisting in concentric troughs arranged in a circular pattern. We defined two different kinds of troughs: (i) structures characterized by a distinct flat floor and interpretable as grabens, and (ii) structures with linear and curvilinear segments [5]. Inner plain deposit: The analysis of the topography made possible the estimation of the deposit's thickness. The measurement of the thickness is possible thanks to the presence of two small craters, crater A and crater, located in Raditladi's Inner plain. Observing the morphology of the two small craters' rim and hummocky central floor, we distinguished two different units: the shallower consists in thin material [6] and the deeper consists in shocked surface. To estimate the deposit thickness, we realized two sections across the two craters, we considered the rim uplift due to the stratigraphic doubling [7], and the depth at which we observed the shocked surface situated below the surficial deposit. Moreover the two craters, one near the center and the other near the peak ring, allowed us to observe the variation of the deposit's thickness: tracing a section that cuts both the craters is possible to appreciate its thinning towards the basin center. On the base of impact crater experiment made by Takita & Sumita (2011) [6] we supposed that the deposit consist in a thin upper layer of material with a fine granulometry. The deposit thickness measured in the crater B, near the peak ring, is 839 m and in the crater A, near the basin center, is 846 m. In conclusion, the obtained values, differing only for 7 m, show an approximately constant thickness of the deposit from the basin center, where the values is slightly greater, to the peak ring. References: [1] Solomon S.C. et al. (2008) Science, 321, 59-62.[2] Strom R.G. et al. (2008) Science, 321, 79. [3] Hawkins S.E. et al. (2007) Space Sci. Rev., 131, 247-338[4] Marchi S. et al. (2011) Planet. Space Sci, 59, 1968-1980. [5] Prockter L.M. et al. (2009) Lunar Planet. Sci. Conf. Abstract, 40, 1758. [6] Takita H. & Sumita I. (2011) Japan Geoscience Union Meeting 2011, PPS020-P05. [7] H.J. Melosh (1989) Oxford Monographs on Geology and Geophysics Series, 11.

Hierarchical Recurrent Neural Hashing for Image Retrieval With Hierarchical Convolutional Features.

PubMed

Lu, Xiaoqiang; Chen, Yaxiong; Li, Xuelong

Hashing has been an important and effective technology in image retrieval due to its computational efficiency and fast search speed. The traditional hashing methods usually learn hash functions to obtain binary codes by exploiting hand-crafted features, which cannot optimally represent the information of the sample. Recently, deep learning methods can achieve better performance, since deep learning architectures can learn more effective image representation features. However, these methods only use semantic features to generate hash codes by shallow projection but ignore texture details. In this paper, we proposed a novel hashing method, namely hierarchical recurrent neural hashing (HRNH), to exploit hierarchical recurrent neural network to generate effective hash codes. There are three contributions of this paper. First, a deep hashing method is proposed to extensively exploit both spatial details and semantic information, in which, we leverage hierarchical convolutional features to construct image pyramid representation. Second, our proposed deep network can exploit directly convolutional feature maps as input to preserve the spatial structure of convolutional feature maps. Finally, we propose a new loss function that considers the quantization error of binarizing the continuous embeddings into the discrete binary codes, and simultaneously maintains the semantic similarity and balanceable property of hash codes. Experimental results on four widely used data sets demonstrate that the proposed HRNH can achieve superior performance over other state-of-the-art hashing methods.Hashing has been an important and effective technology in image retrieval due to its computational efficiency and fast search speed. The traditional hashing methods usually learn hash functions to obtain binary codes by exploiting hand-crafted features, which cannot optimally represent the information of the sample. Recently, deep learning methods can achieve better performance, since deep learning architectures can learn more effective image representation features. However, these methods only use semantic features to generate hash codes by shallow projection but ignore texture details. In this paper, we proposed a novel hashing method, namely hierarchical recurrent neural hashing (HRNH), to exploit hierarchical recurrent neural network to generate effective hash codes. There are three contributions of this paper. First, a deep hashing method is proposed to extensively exploit both spatial details and semantic information, in which, we leverage hierarchical convolutional features to construct image pyramid representation. Second, our proposed deep network can exploit directly convolutional feature maps as input to preserve the spatial structure of convolutional feature maps. Finally, we propose a new loss function that considers the quantization error of binarizing the continuous embeddings into the discrete binary codes, and simultaneously maintains the semantic similarity and balanceable property of hash codes. Experimental results on four widely used data sets demonstrate that the proposed HRNH can achieve superior performance over other state-of-the-art hashing methods.

How to Map Theory: Reliable Methods Are Fruitless Without Rigorous Theory.

PubMed

Gray, Kurt

2017-09-01

Good science requires both reliable methods and rigorous theory. Theory allows us to build a unified structure of knowledge, to connect the dots of individual studies and reveal the bigger picture. Some have criticized the proliferation of pet "Theories," but generic "theory" is essential to healthy science, because questions of theory are ultimately those of validity. Although reliable methods and rigorous theory are synergistic, Action Identification suggests psychological tension between them: The more we focus on methodological details, the less we notice the broader connections. Therefore, psychology needs to supplement training in methods (how to design studies and analyze data) with training in theory (how to connect studies and synthesize ideas). This article provides a technique for visually outlining theory: theory mapping. Theory mapping contains five elements, which are illustrated with moral judgment and with cars. Also included are 15 additional theory maps provided by experts in emotion, culture, priming, power, stress, ideology, morality, marketing, decision-making, and more (see all at theorymaps.org ). Theory mapping provides both precision and synthesis, which helps to resolve arguments, prevent redundancies, assess the theoretical contribution of papers, and evaluate the likelihood of surprising effects.

Structural Data for the Columbus Salt Marsh Geothermal Area - GIS Data

DOE Data Explorer

Faulds, James E.

2011-12-31

Shapefiles and spreadsheets of structural data, including attitudes of faults and strata and slip orientations of faults. - Detailed geologic mapping of ~30 km2 was completed in the vicinity of the Columbus Marsh geothermal field to obtain critical structural data that would elucidate the structural controls of this field. - Documenting E‐ to ENE‐striking left lateral faults and N‐ to NNE‐striking normal faults. - Some faults cut Quaternary basalts. - This field appears to occupy a displacement transfer zone near the eastern end of a system of left‐lateral faults. ENE‐striking sinistral faults diffuse into a system of N‐ to NNE‐striking normal faults within the displacement transfer zone. - Columbus Marsh therefore corresponds to an area of enhanced extension and contains a nexus of fault intersections, both conducive for geothermal activity.

A high definition view of the COSMOS Wall at z ~ 0.73

NASA Astrophysics Data System (ADS)

Iovino, A.; Petropoulou, V.; Scodeggio, M.; Bolzonella, M.; Zamorani, G.; Bardelli, S.; Cucciati, O.; Pozzetti, L.; Tasca, L.; Vergani, D.; Zucca, E.; Finoguenov, A.; Ilbert, O.; Tanaka, M.; Salvato, M.; Kovač, K.; Cassata, P.

2016-08-01

Aims: We present a study of a large filamentary structure at z ~ 0.73 in the field of the COSMOS survey, the so-called COSMOS Wall. This structure encompasses a comprehensive range of environments from a dense cluster and a number of galaxy groups to filaments, less dense regions, and adjacent voids. It thus provides a valuable laboratory for the accurate mapping of environmental effects on galaxy evolution at a look-back time of ~6.5 Gyr, when the Universe was roughly half its present age. Methods: We performed deep spectroscopic observations with VIMOS at VLT of a K-band selected sample of galaxies in this complex structure, building a sample of galaxies complete in galaxy stellar mass down to a lower limit of log(ℳ∗/ℳ⊙) ~ 9.8, which is significantly deeper than previously available data. Thanks to its location within the COSMOS survey, each galaxy benefits from a wealth of ancillary information: HST-ACS data with I-band exposures down to IAB ~ 28 complemented by extensive multiwavelength ground- and space-based observations spanning the entire electromagnetic spectrum. Results: In this paper we detail the survey strategy and weighting scheme adopted to account for the biases introduced by the photometric preselection of our targets. We present our galaxy stellar mass and rest-frame magnitudes estimates together with a group catalog obtained with our new data and their member galaxies color/mass distribution. Conclusions: Owing to our new sample we can perform a detailed, high definition mapping of the complex COSMOS Wall structure. The sharp environmental information, coupled with high quality spectroscopic information and rich ancillary data available in the COSMOS field, enables a detailed study of galaxy properties as a function of local environment in a redshift slice where environmental effects are important, and in a stellar mass range where mass and environment driven effects are both at work. Based on observations collected at the European Southern Observatory, Cerro Paranal, Chile, using the Very Large Telescope under program ESO 085.A-0664.

Sensitivity Tests Between Vs30 and Detailed Shear Wave Profiles Using 1D and 3D Site Response Analysis, Las Vegas Valley

NASA Astrophysics Data System (ADS)

West, Loyd Travis

Site characterization is an essential aspect of hazard analysis and the time-averaged shear-wave velocity to 30 m depth "Vs30" for site-class has become a critical parameter in site-specific and probabilistic hazard analysis. Yet, the general applicability of Vs30 can be ambiguous and much debate and research surround its application. In 2007, in part to mitigate the uncertainty associated with the use of Vs30 in Las Vegas Valley, the Clark County Building Department (CCBD) in collaboration with the Nevada System of Higher Education (NSHE) embarked on an endeavor to map Vs30 using a geophysical methods approach for a site-class microzonation map of over 500 square miles (1500 km2) in southern Nevada. The resulting dataset, described by Pancha et al. (2017), contains over 10,700 1D shear-wave-velocity-depth profiles (SWVP) that constitute a rich database of 3D shear-wave velocity structure that is both laterally and vertical heterogenous. This study capitalizes on the uniquely detailed and spatially dense CCBD database to carry out sensitivity tests on the detailed shear-wave-velocity-profiles and the Vs30 utilizing 1D and 3D site-response approaches. Sensitivity tests are derived from the 1D oscillator response of a single-degree-of-freedom-oscillator and from 3D finite-difference deterministic simulations up to 15 Hz frequency using similar model parameters. Results demonstrate that the detailed SWVP are amplifying ground motions by roughly 50% over the simple Vs30 models, above 4.6 Hz frequency. Numerical simulations also depict significant lateral resonance, focusing, and scattering from seismic energy attributed to the 3D small-scale heterogeneities of the shear-wave-velocity profiles that result in a 70% increase in peak ground velocity. Additionally, PGV ratio maps clearly establish that the increased amplification from the detailed SWVPs is consistent throughout the model space. As a corollary, this study demonstrates the use of finite-differencing numerical based methods to simulate ground motions at high frequencies, up to 15 Hz.

High spatial resolution mapping of folds and fractures using Unmanned Aerial Vehicle (UAV) photogrammetry

NASA Astrophysics Data System (ADS)

Cruden, A. R.; Vollgger, S.

2016-12-01

The emerging capability of UAV photogrammetry combines a simple and cost-effective method to acquire digital aerial images with advanced computer vision algorithms that compute spatial datasets from a sequence of overlapping digital photographs from various viewpoints. Depending on flight altitude and camera setup, sub-centimeter spatial resolution orthophotographs and textured dense point clouds can be achieved. Orientation data can be collected for detailed structural analysis by digitally mapping such high-resolution spatial datasets in a fraction of time and with higher fidelity compared to traditional mapping techniques. Here we describe a photogrammetric workflow applied to a structural study of folds and fractures within alternating layers of sandstone and mudstone at a coastal outcrop in SE Australia. We surveyed this location using a downward looking digital camera mounted on commercially available multi-rotor UAV that autonomously followed waypoints at a set altitude and speed to ensure sufficient image overlap, minimum motion blur and an appropriate resolution. The use of surveyed ground control points allowed us to produce a geo-referenced 3D point cloud and an orthophotograph from hundreds of digital images at a spatial resolution < 10 mm per pixel, and cm-scale location accuracy. Orientation data of brittle and ductile structures were semi-automatically extracted from these high-resolution datasets using open-source software. This resulted in an extensive and statistically relevant orientation dataset that was used to 1) interpret the progressive development of folds and faults in the region, and 2) to generate a 3D structural model that underlines the complex internal structure of the outcrop and quantifies spatial variations in fold geometries. Overall, our work highlights how UAV photogrammetry can contribute to new insights in structural analysis.

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server.

PubMed

Abriata, Luciano A; Bovigny, Christophe; Dal Peraro, Matteo

2016-06-17

Protein variability can now be studied by measuring high-resolution tolerance-to-substitution maps and fitness landscapes in saturated mutational libraries. But these rich and expensive datasets are typically interpreted coarsely, restricting detailed analyses to positions of extremely high or low variability or dubbed important beforehand based on existing knowledge about active sites, interaction surfaces, (de)stabilizing mutations, etc. Our new webserver PsychoProt (freely available without registration at http://psychoprot.epfl.ch or at http://lucianoabriata.altervista.org/psychoprot/index.html ) helps to detect, quantify, and sequence/structure map the biophysical and biochemical traits that shape amino acid preferences throughout a protein as determined by deep-sequencing of saturated mutational libraries or from large alignments of naturally occurring variants. We exemplify how PsychoProt helps to (i) unveil protein structure-function relationships from experiments and from alignments that are consistent with structures according to coevolution analysis, (ii) recall global information about structural and functional features and identify hitherto unknown constraints to variation in alignments, and (iii) point at different sources of variation among related experimental datasets or between experimental and alignment-based data. Remarkably, metabolic costs of the amino acids pose strong constraints to variability at protein surfaces in nature but not in the laboratory. This and other differences call for caution when extrapolating results from in vitro experiments to natural scenarios in, for example, studies of protein evolution. We show through examples how PsychoProt can be a useful tool for the broad communities of structural biology and molecular evolution, particularly for studies about protein modeling, evolution and design.

Processing of single channel air and water gun data for imaging an impact structure at the Chesapeake Bay

USGS Publications Warehouse

Lee, Myung W.

1999-01-01

Processing of 20 seismic profiles acquired in the Chesapeake Bay area aided in analysis of the details of an impact structure and allowed more accurate mapping of the depression caused by a bolide impact. Particular emphasis was placed on enhancement of seismic reflections from the basement. Application of wavelet deconvolution after a second zero-crossing predictive deconvolution improved the resolution of shallow reflections, and application of a match filter enhanced the basement reflections. The use of deconvolution and match filtering with a two-dimensional signal enhancement technique (F-X filtering) significantly improved the interpretability of seismic sections.

The state of the Universe.

PubMed

Coles, Peter

2005-01-20

The past 20 years have seen dramatic advances in cosmology, mostly driven by observations from new telescopes and detectors. These instruments have allowed astronomers to map out the large-scale structure of the Universe and probe the very early stages of its evolution. We seem to have established the basic parameters describing the behaviour of our expanding Universe, thereby putting cosmology on a firm empirical footing. But the emerging 'standard' model leaves many details of galaxy formation still to be worked out, and new ideas are emerging that challenge the theoretical framework on which the structure of the Big Bang is based. There is still a great deal left to explore in cosmology.

Revealing the velocity structure of the filamentary nebula in NGC 1275 in its entirety

NASA Astrophysics Data System (ADS)

Gendron-Marsolais, M.; Hlavacek-Larrondo, J.; Martin, T. B.; Drissen, L.; McDonald, M.; Fabian, A. C.; Edge, A. C.; Hamer, S. L.; McNamara, B.; Morrison, G.

2018-05-01

We have produced for the first time a detailed velocity map of the giant filamentary nebula surrounding NGC 1275, the Perseus cluster's brightest galaxy, and revealed a previously unknown rich velocity structure across the entire nebula. These new observations were obtained with the optical imaging Fourier transform spectrometer SITELLE at CFHT. With its wide field of view (˜11'×11'), SITELLE is the only integral field unit spectroscopy instrument able to cover the 80 kpc×55 kpc (3.8'×2.6') large nebula in NGC 1275. Our analysis of these observations shows a smooth radial gradient of the [N II]λ6583/Hα line ratio, suggesting a change in the ionization mechanism and source across the nebula. The velocity map shows no visible general trend or rotation, indicating that filaments are not falling uniformly onto the galaxy, nor being uniformly pulled out from it. Comparison between the physical properties of the filaments and Hitomi measurements of the X-ray gas dynamics in Perseus are also explored.

Higher groupoid bundles, higher spaces, and self-dual tensor field equations

NASA Astrophysics Data System (ADS)

Jurčo, Branislav; Sämann, Christian; Wolf, Martin

2016-08-01

We develop a description of higher gauge theory with higher groupoids as gauge structure from first principles. This approach captures ordinary gauge theories and gauged sigma models as well as their categorifications on a very general class of (higher) spaces comprising presentable differentiable stacks, as e.g. orbifolds. We start off with a self-contained review on simplicial sets as models of $(\\infty,1)$-categories. We then discuss principal bundles in terms of simplicial maps and their homotopies. We explain in detail a differentiation procedure, suggested by Severa, that maps higher groupoids to $L_\\infty$-algebroids. Generalising this procedure, we define connections for higher groupoid bundles. As an application, we obtain six-dimensional superconformal field theories via a Penrose-Ward transform of higher groupoid bundles over a twistor space. This construction reduces the search for non-Abelian self-dual tensor field equations in six dimensions to a search for the appropriate (higher) gauge structure. The treatment aims to be accessible to theoretical physicists.

AGN Space Telescope and Optical Reverberation Mapping Project II. Ultraviolet and Optical Continuum Analysis

NASA Astrophysics Data System (ADS)

Fausnaugh, Michael; Agn Storm Team

2015-01-01

The AGN STORM collaboration recently completed an extensive reverberation mapping campaign, targeting NGC 5548 with observations spanning the hard X-rays to mid-infrared. This campaign represents a massive collaborative effort, with far UV continuum spectrophotometry obtained through an intensive HST COS program, and near-UV/optical broad band photometry obtained from Swift and over 25 ground-based telescopes (in BVR and griz). The campaign spanned the entire 2014 observing season with virtually daily cadence, which allows us to compare with unprecedented accuracy the detailed structure of the observed UV and optical continuum emission signals in this archetypal AGN. We find statistically significant time delays between lightcurves from different wavebands, and this result has implications for the temperature, ionization, and geometric configuration of the AGN's sub-parsec scale environment. We will present the UV/optical continuum lightcurves from this campaign, as well as an analysis of the wavelength-dependent structure of the time delays.

Deciphering fine molecular details of proteins' structure and function with a Protein Surface Topography (PST) method.

PubMed

Koromyslova, Anna D; Chugunov, Anton O; Efremov, Roman G

2014-04-28

Molecular surfaces are the key players in biomolecular recognition and interactions. Nowadays, it is trivial to visualize a molecular surface and surface-distributed properties in three-dimensional space. However, such a representation trends to be biased and ambiguous in case of thorough analysis. We present a new method to create 2D spherical projection maps of entire protein surfaces and manipulate with them--protein surface topography (PST). It permits visualization and thoughtful analysis of surface properties. PST helps to easily portray conformational transitions, analyze proteins' properties and their dynamic behavior, improve docking performance, and reveal common patterns and dissimilarities in molecular surfaces of related bioactive peptides. This paper describes basic usage of PST with an example of small G-proteins conformational transitions, mapping of caspase-1 intersubunit interface, and intrinsic "complementarity" in the conotoxin-acetylcholine binding protein complex. We suggest that PST is a beneficial approach for structure-function studies of bioactive peptides and small proteins.

Delafossite structure of heterogenite polytypes (HCoO2) by Raman and infrared micro-spectroscopy

NASA Astrophysics Data System (ADS)

Burlet, C.; Goethals, H.; Vanbrabant, Y.

2016-04-01

Heterogenite is commonly referred in mineralogy literature as a cobalt oxy-hydroxide CoO(OH). However, detailed analysis of Raman and infrared spectra acquired on particularly well-crystallized natural samples of heterogenite suggests that the mineral can be characterized by a delafossite-type structure, with a general chemical formula ABO2. Indeed, the Raman spectrum of heterogenite, along the one with grimaldiite (HCrO2), lacks visible free OH-group vibrational modes, while the infrared spectrum shows strong hydrogen bond absorption bands. HCoO2 is thus a better formulation of heterogenite that describes more clearly its vibrational behavior and avoids the confusion in literature. Electronic backscattered diffraction (EBSD) is then used to distinguish and map the 2H and 3R heterogenite natural polytypes for the first time. The comparison of EBSD and Raman mappings clearly indicates that the 2H polytype is characterized by an additional peak at 1220 cm- 1. The presence/absence is therefore an efficient tool to distinguish both polytypes.

Application of Particle Image Velocimetry and Reference Image Topography to jet shock cells using the hydraulic analogy

NASA Astrophysics Data System (ADS)

Kumar, Vaibhav; Ng, Ivan; Sheard, Gregory J.; Brocher, Eric; Hourigan, Kerry; Fouras, Andreas

2011-08-01

This paper examines the shock cell structure, vorticity and velocity field at the exit of an underexpanded jet nozzle using a hydraulic analogy and the Reference Image Topography technique. Understanding the flow in this region is important for the mitigation of screech, an aeroacoustic problem harmful to aircraft structures. Experiments are conducted on a water table, allowing detailed quantitative investigation of this important flow regime at a greatly reduced expense. Conventional Particle Image Velocimetry is employed to determine the velocity and vorticity fields of the nozzle exit region. Applying Reference Image Topography, the wavy water surface is reconstructed and when combined with the hydraulic analogy, provides a pressure map of the region. With this approach subtraction of surfaces is used to highlight the unsteady regions of the flow, which is not as convenient or quantitative with conventional Schlieren techniques. This allows a detailed analysis of the shock cell structures and their interaction with flow instabilities in the shear layer that are the underlying cause of jet screech.

A Novel Approach to Data Collection for Difficult Structures: Data Management for Large Numbers of Crystals with the BLEND Software.

PubMed

Mylona, Anastasia; Carr, Stephen; Aller, Pierre; Moraes, Isabel; Treisman, Richard; Evans, Gwyndaf; Foadi, James

2017-08-04

The present article describes how to use the computer program BLEND to help assemble complete datasets for the solution of macromolecular structures, starting from partial or complete datasets, derived from data collection from multiple crystals. The program is demonstrated on more than two hundred X-ray diffraction datasets obtained from 50 crystals of a complex formed between the SRF transcription factor, its cognate DNA, and a peptide from the SRF cofactor MRTF-A. This structure is currently in the process of being fully solved. While full details of the structure are not yet available, the repeated application of BLEND on data from this structure, as they have become available, has made it possible to produce electron density maps clear enough to visualise the potential location of MRTF sequences.

A Novel Approach to Data Collection for Difficult Structures: Data Management for Large Numbers of Crystals with the BLEND Software

PubMed Central

Mylona, Anastasia; Carr, Stephen; Aller, Pierre; Moraes, Isabel; Treisman, Richard; Evans, Gwyndaf; Foadi, James

2018-01-01

The present article describes how to use the computer program BLEND to help assemble complete datasets for the solution of macromolecular structures, starting from partial or complete datasets, derived from data collection from multiple crystals. The program is demonstrated on more than two hundred X-ray diffraction datasets obtained from 50 crystals of a complex formed between the SRF transcription factor, its cognate DNA, and a peptide from the SRF cofactor MRTF-A. This structure is currently in the process of being fully solved. While full details of the structure are not yet available, the repeated application of BLEND on data from this structure, as they have become available, has made it possible to produce electron density maps clear enough to visualise the potential location of MRTF sequences. PMID:29456874

Detailed Sections from Auger Holes in the Emporia 1:100,000-Scale Quadrangle, North Carolina and Virginia

USGS Publications Warehouse

Weems, Robert E.; Schindler, J. Stephen; Lewis, William C.

2010-01-01

The Emporia 1:100,000-scale quadrangle straddles the Tidewater Fall Line in southern Virginia and includes a small part of northernmost North Carolina. Sediments of the coastal plain underlie the eastern three-fifths of this area. These sediments onlap crystalline basement rocks toward the west and dip gently to the east, reaching a maximum known thickness of 821 feet in the extreme southeastern part of the map area. The gentle eastward dip is disrupted in several areas due to faulting delineated during the course of mapping. In order to produce a new geologic map of the Emporia 1:100,000-scale quadrangle, the U.S. Geological Survey drilled one corehole to a depth of 223 feet and augered 192 shallow research test holes (maximum depth 135 feet) to supplement sparse outcrop data available from the coastal plain part of the map area. The recovered sediments were studied and data from them recorded to determine the lithologic characteristics, spatial distribution, and temporal framework of the represented coastal plain stratigraphic units. These test holes were critical for accurately determining the distribution of major geologic units and the position of unit boundaries that will be shown on the forthcoming Emporia geologic map, but much of the detailed subsurface data cannot be shown readily through this map product. Therefore, the locations and detailed descriptions of the auger test holes and one corehole are provided in this open-file report for geologists, hydrologists, engineers, and community planners in need of a detailed shallow-subsurface stratigraphic framework for much of the Emporia map region.

Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.).

PubMed

Ohmido, Nobuko; Iwata, Aiko; Kato, Seiji; Wako, Toshiyuki; Fukui, Kiichi

2018-01-01

A quantitative pachytene chromosome map of rice (Oryza sativa L.) was developed using imaging methods. The map depicts not only distribution patterns of chromomeres specific to pachytene chromosomes, but also the higher order information of chromosomal structures, such as heterochromatin (condensed regions), euchromatin (decondensed regions), the primary constrictions (centromeres), and the secondary constriction (nucleolar organizing regions, NOR). These features were image analyzed and quantitatively mapped onto the map by Chromosome Image Analyzing System ver. 4.0 (CHIAS IV). Correlation between H3K9me2, an epigenetic marker and formation and/or maintenance of heterochromatin, thus was, clearly visualized. Then the pachytene chromosome map was unified with the existing somatic chromosome and linkage maps by physically mapping common DNA markers among them, such as a rice A genome specific tandem repeat sequence (TrsA), 5S and 45S ribosomal RNA genes, five bacterial artificial chromosome (BAC) clones, four P1 bacteriophage artificial chromosome (PAC) clones using multicolor fluorescence in situ hybridization (FISH). Detailed comparison between the locations of the DNA probes on the pachytene chromosomes using multicolor FISH, and the linkage map enabled determination of the chromosome number and short/long arms of individual pachytene chromosomes using the chromosome number and arm assignment designated for the linkage map. As a result, the quantitative pachytene chromosome map was unified with two other major rice chromosome maps representing somatic prometaphase chromosomes and genetic linkages. In conclusion, the unification of the three rice maps serves as an indispensable basic information, not only for an in-depth comparison between genetic and chromosomal data, but also for practical breeding programs.

First microwave map of the Moon with Chang'E-1 data: The role of local time in global imaging

NASA Astrophysics Data System (ADS)

Zheng, Y. C.; Tsang, K. T.; Chan, K. L.; Zou, Y. L.; Zhang, F.; Ouyang, Z. Y.

2012-05-01

Among recent lunar orbiters, only the Chinese Chang'E-1 (CE-1) was equipped with a passive microwave radiometer (MRM) to measure the natural microwave emission from the lunar surface. The microwave emission, characterized by a frequency-dependent brightness temperature (TB), is related to the physical temperature and dielectric properties of the lunar surface. By measuring the brightness temperature at different frequencies, detailed thermal behavior and properties of the lunar surface can be retrieved. Using CE-1's microwave data, we present here a set of microwave maps of the Moon constructed through a rescaling of TB to noontime or midnight. The adopted processing technique helps to reduce the effect of mixing up the temporal and spatial variations introduced by the satellite's localized measurements which cover different locations of the globe at different lunar local times. The resulting maps show fine structures unseen in previous microwave maps that disregarded the local time effect. We discussed the new features revealed and their possible connections with the lunar geology.

Ranked centroid projection: a data visualization approach with self-organizing maps.

PubMed

Yen, G G; Wu, Z

2008-02-01

The self-organizing map (SOM) is an efficient tool for visualizing high-dimensional data. In this paper, the clustering and visualization capabilities of the SOM, especially in the analysis of textual data, i.e., document collections, are reviewed and further developed. A novel clustering and visualization approach based on the SOM is proposed for the task of text mining. The proposed approach first transforms the document space into a multidimensional vector space by means of document encoding. Afterwards, a growing hierarchical SOM (GHSOM) is trained and used as a baseline structure to automatically produce maps with various levels of detail. Following the GHSOM training, the new projection method, namely the ranked centroid projection (RCP), is applied to project the input vectors to a hierarchy of 2-D output maps. The RCP is used as a data analysis tool as well as a direct interface to the data. In a set of simulations, the proposed approach is applied to an illustrative data set and two real-world scientific document collections to demonstrate its applicability.

Classification of a wetland area along the upper Mississippi River with aerial videography

USGS Publications Warehouse

Jennings, C.A.; Vohs, P.A.; Dewey, M.R.

1992-01-01

We evaluated the use of aerial videography for classifying wetland habitats along the upper Mississippi River and found the prompt availability of habitat feature maps to be the major advantage of the video imagery technique. We successfully produced feature maps from digitized video images that generally agreed with the known distribution and areal coverages of the major habitat types independently identified and quantified with photointerpretation techniques. However, video images were not sufficiently detailed to allow us to consistently discriminate among the classes of aquatic macrophytes present or to quantify their areal coverage. Our inability to consistently distinguish among emergent, floating, and submergent macrophytes from the feature maps may have been related to the structural complexity of the site, to our limited vegetation sampling, and to limitations in video imagery. We expect that careful site selection (i.e., the desired level of resolution is available from video imagery) and additional vegetation samples (e.g., along a transect) will allow improved assignment of spectral values to specific plant types and enhance plant classification from feature maps produced from video imagery.

Mapping process and age of Quaternary deposits on Santa Rosa Island, Channel Islands National Park, California

NASA Astrophysics Data System (ADS)

Schmidt, K. M.; Minor, S. A.; Bedford, D.

2016-12-01

Employing a geomorphic process-age classification scheme, we mapped the Quaternary surficial geology of Santa Rosa (SRI) within the Channel Islands National Park. This detailed (1:12,000 scale) map represents upland erosional transport processes and alluvial, fluvial, eolian, beach, marine terrace, mass wasting, and mixed depositional processes. Mapping was motivated through an agreement with the National Park Service and is intended to aid natural resource assessments, including post-grazing disturbance recovery and identification of mass wasting and tectonic hazards. We obtained numerous detailed geologic field observations, fossils for faunal identification as age control, and materials for numeric dating. This GPS-located field information provides ground truth for delineating map units and faults using GIS-based datasets- high-resolution (sub-meter) aerial imagery, LiDAR-based DEMs and derivative raster products. Mapped geologic units denote surface processes and Quaternary faults constrain deformation kinematics and rates, which inform models of landscape change. Significant findings include: 1) Flights of older Pleistocene (>120 ka) and possibly Pliocene marine terraces were identified beneath younger alluvial and eolian deposits at elevations as much as 275 m above modern sea level. Such elevated terraces suggest that SRI was a smaller, more submerged island in the late Neogene and (or) early Pleistocene prior to tectonic uplift. 2) Structural and geomorphic observations made along the potentially seismogenic SRI fault indicate a protracted slip history during the late Neogene and Quaternary involving early normal slip, later strike slip, and recent reverse slip. These changes in slip mode explain a marked contrast in island physiography across the fault. 3) Many of the steeper slopes are dramatically stripped of regolith, with exposed bedrock and deeply incised gullies, presumably due effects related to past grazing practices. 4) Surface water presence is spatially discontinuous and correlated with major fault traces and geologic unit boundaries.

Evaluation of Seismic Risk of Siberia Territory

NASA Astrophysics Data System (ADS)

Seleznev, V. S.; Soloviev, V. M.; Emanov, A. F.

The outcomes of modern geophysical researches of the Geophysical Survey SB RAS, directed on study of geodynamic situation in large industrial and civil centers on the territory of Siberia with the purpose of an evaluation of seismic risk of territories and prediction of origin of extreme situations of natural and man-caused character, are pre- sented in the paper. First of all it concerns the testing and updating of a geoinformation system developed by Russian Emergency Ministry designed for calculations regarding the seismic hazard and response to distructive earthquakes. The GIS database contains the catalogues of earthquakes and faults, seismic zonation maps, vectorized city maps, information on industrial and housing fund, data on character of building and popula- tion in inhabited places etc. The geoinformation system allows to solve on a basis of probabilistic approaches the following problems: - estimating the earthquake impact, required forces, facilities and supplies for life-support of injured population; - deter- mining the consequences of failures on chemical and explosion-dangerous objects; - optimization problems on assurance technology of conduct of salvage operations. Using this computer program, the maps of earthquake risk have been constructed for several seismically dangerous regions of Siberia. These maps display the data on the probable amount of injured people and relative economic damage from an earthquake, which can occur in various sites of the territory according to the map of seismic zona- tion. The obtained maps have allowed determining places where the detailed seismo- logical observations should be arranged. Along with it on the territory of Siberia the wide-ranging investigations with use of new methods of evaluation of physical state of industrial and civil establishments (buildings and structures, hydroelectric power stations, bridges, dams, etc.), high-performance detailed electromagnetic researches of ground conditions of city territories, roads, runways, etc., studying of seismic con- dition in large industrial and civil centers and others.

Clickstream data yields high-resolution maps of science.

PubMed

Bollen, Johan; Van de Sompel, Herbert; Hagberg, Aric; Bettencourt, Luis; Chute, Ryan; Rodriguez, Marko A; Balakireva, Lyudmila

2009-01-01

Intricate maps of science have been created from citation data to visualize the structure of scientific activity. However, most scientific publications are now accessed online. Scholarly web portals record detailed log data at a scale that exceeds the number of all existing citations combined. Such log data is recorded immediately upon publication and keeps track of the sequences of user requests (clickstreams) that are issued by a variety of users across many different domains. Given these advantages of log datasets over citation data, we investigate whether they can produce high-resolution, more current maps of science. Over the course of 2007 and 2008, we collected nearly 1 billion user interactions recorded by the scholarly web portals of some of the most significant publishers, aggregators and institutional consortia. The resulting reference data set covers a significant part of world-wide use of scholarly web portals in 2006, and provides a balanced coverage of the humanities, social sciences, and natural sciences. A journal clickstream model, i.e. a first-order Markov chain, was extracted from the sequences of user interactions in the logs. The clickstream model was validated by comparing it to the Getty Research Institute's Architecture and Art Thesaurus. The resulting model was visualized as a journal network that outlines the relationships between various scientific domains and clarifies the connection of the social sciences and humanities to the natural sciences. Maps of science resulting from large-scale clickstream data provide a detailed, contemporary view of scientific activity and correct the underrepresentation of the social sciences and humanities that is commonly found in citation data.

Clickstream Data Yields High-Resolution Maps of Science

PubMed Central

Bollen, Johan; Van de Sompel, Herbert; Rodriguez, Marko A.; Balakireva, Lyudmila

2009-01-01

Background Intricate maps of science have been created from citation data to visualize the structure of scientific activity. However, most scientific publications are now accessed online. Scholarly web portals record detailed log data at a scale that exceeds the number of all existing citations combined. Such log data is recorded immediately upon publication and keeps track of the sequences of user requests (clickstreams) that are issued by a variety of users across many different domains. Given these advantages of log datasets over citation data, we investigate whether they can produce high-resolution, more current maps of science. Methodology Over the course of 2007 and 2008, we collected nearly 1 billion user interactions recorded by the scholarly web portals of some of the most significant publishers, aggregators and institutional consortia. The resulting reference data set covers a significant part of world-wide use of scholarly web portals in 2006, and provides a balanced coverage of the humanities, social sciences, and natural sciences. A journal clickstream model, i.e. a first-order Markov chain, was extracted from the sequences of user interactions in the logs. The clickstream model was validated by comparing it to the Getty Research Institute's Architecture and Art Thesaurus. The resulting model was visualized as a journal network that outlines the relationships between various scientific domains and clarifies the connection of the social sciences and humanities to the natural sciences. Conclusions Maps of science resulting from large-scale clickstream data provide a detailed, contemporary view of scientific activity and correct the underrepresentation of the social sciences and humanities that is commonly found in citation data. PMID:19277205

Evaluation of ERTS-1 imagery for mapping Quaternary deposits and landforms in the Great Plains and Midwest. [Illinois, Nebraska, Iowa, Missouri, and Kansas

NASA Technical Reports Server (NTRS)

Morrison, R. B. (Principal Investigator); Hallberg, G. R.

1973-01-01

The author has identified the following significant results. Maps at 1:1 million scale exemplifying the first phase of the investigation (which consists of the identification and mapping of landform and land use characteristics and surficial geologic materials directly from the ERTS-1 images without use of additional data) were prepared. For areas that have not been mapped at 1:500,000 or larger scales, maps will provide the first moderately detailed information on landform features and surficial materials. Much of the information mapped is significant for exploration and development of ground (and, locally, petroleum) and for applications in engineering and environmental geology, including land use planning. Analysis of drainage patterns, stream-divide relations and land use patterns has revealed several possible moraine-controlled divices of middle and early Pleistocene age. One is an extension of the Cedar Bluffs moraine of southeastern Nebraska. Another of these divides may correspond to the terminus of Nebraska drift in the Kansas City study area. The trends of parts of various ancient filled valleys also have been identified by analysis of charges in width of the present stream valleys. The alinements of certain segments of stream valleys in Kansas and Missouri appear to be controlled by regional faults or other structural features.

Development of new mapping standards for geological surveys in Greenland

NASA Astrophysics Data System (ADS)

Mätzler, Eva; langley, Kirsty; Hollis, Julie; Heide-Jørgensen, Helene

2017-04-01

The current official topographic and geological maps of Greenland are in scale of 1:250:000 and 1:500.000 respectively, allowing only very limited amount of detail. The maps are outdated, and periglacial landscapes have changed significantly since the acquisition date. Hence, new affordable mapping products of high quality are in demand that can be available within a restricted time frame. In order to fulfill those demands a new mapping standard based on satellite imagery was developed, where classifications are mainly carried out with algorithms suitable for automatization. A Digital Elevation Model (ArcticDEM) was applied allowing examination of topographic and geological structures and 3D visualizing. Information on topographic features and lithology was extracted based on analysis of spectral characteristics from different multispectral data sources (Landsat 8, ASTER, WorldView-3) partly combined with the DEM. A first product is completed, and validation was carried out by field surveys. Field and remotely sensed data were integrated into a GIS database, and derived data will be freely available providing a valuable tool for planning and carrying out mineral exploration and other field activities. This study offers a method for generating up-to-date, low-cost and high quality mapping products suitable for Arctic regions, where accessibility is restricted due to remoteness and lack of infrastructure.

Mapping knowledge domains: Characterizing PNAS

PubMed Central

Boyack, Kevin W.

2004-01-01

A review of data mining and analysis techniques that can be used for the mapping of knowledge domains is given. Literature mapping techniques can be based on authors, documents, journals, words, and/or indicators. Most mapping questions are related to research assessment or to the structure and dynamics of disciplines or networks. Several mapping techniques are demonstrated on a data set comprising 20 years of papers published in PNAS. Data from a variety of sources are merged to provide unique indicators of the domain bounded by PNAS. By using funding source information and citation counts, it is shown that, on an aggregate basis, papers funded jointly by the U.S. Public Health Service (which includes the National Institutes of Health) and non-U.S. government sources outperform papers funded by other sources, including by the U.S. Public Health Service alone. Grant data from the National Institute on Aging show that, on average, papers from large grants are cited more than those from small grants, with performance increasing with grant amount. A map of the highest performing papers over the 20-year period was generated by using citation analysis. Changes and trends in the subjects of highest impact within the PNAS domain are described. Interactions between topics over the most recent 5-year period are also detailed. PMID:14963238

Mapping the Complex Morphology of Cell Interactions with Nanowire Substrates Using FIB-SEM

PubMed Central

Jensen, Mikkel R. B.; Łopacińska, Joanna; Schmidt, Michael S.; Skolimowski, Maciej; Abeille, Fabien; Qvortrup, Klaus; Mølhave, Kristian

2013-01-01

Using high resolution focused ion beam scanning electron microscopy (FIB-SEM) we study the details of cell-nanostructure interactions using serial block face imaging. 3T3 Fibroblast cellular monolayers are cultured on flat glass as a control surface and on two types of nanostructured scaffold substrates made from silicon black (Nanograss) with low- and high nanowire density. After culturing for 72 hours the cells were fixed, heavy metal stained, embedded in resin, and processed with FIB-SEM block face imaging without removing the substrate. The sample preparation procedure, image acquisition and image post-processing were specifically optimised for cellular monolayers cultured on nanostructured substrates. Cells display a wide range of interactions with the nanostructures depending on the surface morphology, but also greatly varying from one cell to another on the same substrate, illustrating a wide phenotypic variability. Depending on the substrate and cell, we observe that cells could for instance: break the nanowires and engulf them, flatten the nanowires or simply reside on top of them. Given the complexity of interactions, we have categorised our observations and created an overview map. The results demonstrate that detailed nanoscale resolution images are required to begin understanding the wide variety of individual cells’ interactions with a structured substrate. The map will provide a framework for light microscopy studies of such interactions indicating what modes of interactions must be considered. PMID:23326412

Sex determination in papaya.

PubMed

Ming, Ray; Yu, Qingyi; Moore, Paul H

2007-06-01

Sex determination is an intriguing system in trioecious papaya. Over the past seven decades various hypotheses, based on the knowledge and information available at the time, have been proposed to explain the genetics of the papaya's sex determination. These include a single gene with three alleles, a group of closely linked genes, a genic balance of sex chromosome over autosomes, classical XY chromosomes, and regulatory elements of the flower development pathway. Recent advancements in genomic technology make it possible to characterize the genomic region involved in sex determination at the molecular level. High density linkage mapping validated the hypothesis that predicted recombination suppression at the sex determination locus. Physical mapping and sample sequencing of the non-recombination region led to the conclusion that sex determination is controlled by a pair of primitive sex chromosomes with a small male-specific region (MSY) of the Y chromosome. We now postulate that two sex determination genes control the sex determination pathway. One, a feminizing or stamen suppressor gene, causes stamen abortion before or at flower inception while the other, a masculinizing or carpel suppressor gene, causes carpel abortion at a later flower developmental stage. Detailed physical mapping is beginning to reveal structural details about the sex determination region and sequencing is expected to uncover candidate sex determining genes. Cloning of the sex determination genes and understanding the sex determination process could have profound application in papaya production.

Mapping the human atria with optical coherence tomography

NASA Astrophysics Data System (ADS)

Lye, Theresa H.; Gan, Yu; Hendon, Christine P.

2017-02-01

Atrial structure plays an important role in the mechanisms of atrial disease. However, detailed imaging of human atria remains limited due to many imaging modalities lacking sufficient resolution. We propose the use of optical coherence tomography (OCT), which has micrometer resolution and millimeter-scale imaging depth well-suited for the atria, combined with image stitching algorithms, to develop large, detailed atria image maps. Human atria samples (n = 7) were obtained under approved protocols from the National Disease Research Interchange (NDRI). One right atria sample was imaged using an ultrahigh-resolution spectral domain OCT system, with 5.52 and 2.72 μm lateral and axial resolution in air, respectively, and 1.78 mm imaging depth. Six left atria and five pulmonary vein samples were imaged using the spectral domain OCT system, Telesto I (Thorlabs GmbH, Germany) with 15 and 6.5 μm lateral and axial resolution in air, respectively, and 2.51 mm imaging depth. Overlapping image volumes were obtained from areas of the human left and right atria and the pulmonary veins. Regions of collagen, adipose, and myocardium could be identified within the OCT images. Image stitching was applied to generate fields of view with side dimensions up to about 3 cm. This study established steps towards mapping large regions of the human atria and pulmonary veins in high resolution using OCT.

Comparative Maps & Dashboards Home | ECHO | US EPA

EPA Pesticide Factsheets

Comparative Maps and Dashboards focus on environmental compliance and enforcement trends at a state and national level. Comparative maps provide a quick cross-country look at key environmental compliance and enforcement indicators. The maps link to dashboards that provide details by state/territory.

State Comparative Maps Help | ECHO | US EPA

EPA Pesticide Factsheets

Comparative Maps in ECHO focus on environmental compliance and enforcement trends at a state and national level. Comparative maps provide a quick cross-country look at key environmental compliance and enforcement indicators. The maps link to dashboards that provide details by state/territory.

Preliminary geologic map of the Big Bear City 7.5' Quadrangle, San Bernardino County, California

USGS Publications Warehouse

Miller, Fred K.; Cossette, Digital preparation by Pamela M.

2004-01-01

This data set maps and describes the geology of the Big Bear City 7.5' quadrangle, San Bernardino County, California. Created using Environmental Systems Research Institute's ARC/INFO software, the data base consists of the following items: (1) a rock-unit coverage and attribute tables (polygon and arc) containing geologic contacts, units and rock-unit labels as annotation which are also included in a separate annotation coverage, bbc_anno (2) a point coverage containing structural point data and (3) a coverage containing fold axes. In addition, the data set includes the following graphic and text products: (1) A PostScript graphic plot-file containing the geologic map, topography, cultural data, a Correlation of Map Units (CMU) diagram, a Description of Map Units (DMU), an index map, a regional geologic and structure map, and an explanation for point and line symbols; (2) PDF files of the Readme (including the metadata file as an appendix), and a screen graphic of the plot produced by the PostScript plot file. The geologic map describes a geologically complex area on the north side of the San Bernardino Mountains. Bedrock units in the Big Bear City quadrangle are dominated by (1) large Cretaceous granitic bodies ranging in composition from monzogranite to gabbro, (2) metamorphosed sedimentary rocks ranging in age from late Paleozoic to late Proterozoic, and (3) Middle Proterozoic gneiss. These rocks are complexly deformed by normal, reverse, and thrust faults, and in places are tightly folded. The geologic map database contains original U.S. Geological Survey data generated by detailed field observation and by interpretation of aerial photographs. The map data was compiled on base-stable cronoflex copies of the Big Bear City 7.5' topographic map, transferred to a scribe-guide and subsequently digitized. Lines, points, and polygons were edited at the USGS using standard ARC/INFO commands. Digitizing and editing artifacts significant enough to display at a scale of 1:24,000 were corrected. Within the database, geologic contacts are represented as lines (arcs), geologic units as polygons, and site-specific data as points. Polygon, arc, and point attribute tables (.pat, .aat, and .pat, respectively) uniquely identify each geologic datum.

Quantitative architectural analysis: a new approach to cortical mapping.

PubMed

Schleicher, A; Palomero-Gallagher, N; Morosan, P; Eickhoff, S B; Kowalski, T; de Vos, K; Amunts, K; Zilles, K

2005-12-01

Recent progress in anatomical and functional MRI has revived the demand for a reliable, topographic map of the human cerebral cortex. Till date, interpretations of specific activations found in functional imaging studies and their topographical analysis in a spatial reference system are, often, still based on classical architectonic maps. The most commonly used reference atlas is that of Brodmann and his successors, despite its severe inherent drawbacks. One obvious weakness in traditional, architectural mapping is the subjective nature of localising borders between cortical areas, by means of a purely visual, microscopical examination of histological specimens. To overcome this limitation, more objective, quantitative mapping procedures have been established in the past years. The quantification of the neocortical, laminar pattern by defining intensity line profiles across the cortical layers, has a long tradition. During the last years, this method has been extended to enable a reliable, reproducible mapping of the cortex based on image analysis and multivariate statistics. Methodological approaches to such algorithm-based, cortical mapping were published for various architectural modalities. In our contribution, principles of algorithm-based mapping are described for cyto- and receptorarchitecture. In a cytoarchitectural parcellation of the human auditory cortex, using a sliding window procedure, the classical areal pattern of the human superior temporal gyrus was modified by a replacing of Brodmann's areas 41, 42, 22 and parts of area 21, with a novel, more detailed map. An extension and optimisation of the sliding window procedure to the specific requirements of receptorarchitectonic mapping, is also described using the macaque central sulcus and adjacent superior parietal lobule as a second, biologically independent example. Algorithm-based mapping procedures, however, are not limited to these two architectural modalities, but can be applied to all images in which a laminar cortical pattern can be detected and quantified, e.g. myeloarchitectonic and in vivo high resolution MR imaging. Defining cortical borders, based on changes in cortical lamination in high resolution, in vivo structural MR images will result in a rapid increase of our knowledge on the structural parcellation of the human cerebral cortex.

Personnel controlling system principles and structural goals of the industrial companies

NASA Astrophysics Data System (ADS)

Pimenova, Anna; Kuzmina, Svetlana; Zavialov, Kirill; Ushakova, Elena

2017-10-01

This article peruses the basics of the controlling system, its functions and structural phases of the industrial companies. The personnel controlling of the industrial companies (for examples transportation or energy company) is examined in detail. Controlling system occurs applicable within various activity fields of an enterprise. Modern approaches of the domestic scholars are inspected. Goals and focuses of the personnel controlling system of the industrial companies have been analyzed. Foremost it occurs crucial to analyze and define the entire labor process to figure out primary requirements issued to the labor and employees. In article is offered the road map to follow to structure the purposes of all management system of personnel in the specific organization - in the transportation or energy company or other enterprises.

Synthetic Modeling of A Geothermal System Using Audio-magnetotelluric (AMT) and Magnetotelluric (MT)

NASA Astrophysics Data System (ADS)

Mega Saputra, Rifki; Widodo

2017-04-01

Indonesia has 40% of the world’s potential geothermal resources with estimated capacity of 28,910 MW. Generally, the characteristic of the geothermal system in Indonesia is liquid-dominated systems, which driven by volcanic activities. In geothermal exploration, electromagnetic methods are used to map structures that could host potential reservoirs and source rocks. We want to know the responses of a geothermal system using synthetic data of Audio-magnetotelluric (AMT) and Magnetotelluric (MT). Due to frequency range, AMT and MT data can resolve the shallow and deeper structure, respectively. 1-D models have been performed using AMT and MT data. The results indicate that AMT and MT data give detailed conductivity distribution of geothermal structure.

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps

PubMed Central

2013-01-01

Background Molecular biology knowledge can be formalized and systematically represented in a computer-readable form as a comprehensive map of molecular interactions. There exist an increasing number of maps of molecular interactions containing detailed and step-wise description of various cell mechanisms. It is difficult to explore these large maps, to organize discussion of their content and to maintain them. Several efforts were recently made to combine these capabilities together in one environment, and NaviCell is one of them. Results NaviCell is a web-based environment for exploiting large maps of molecular interactions, created in CellDesigner, allowing their easy exploration, curation and maintenance. It is characterized by a combination of three essential features: (1) efficient map browsing based on Google Maps; (2) semantic zooming for viewing different levels of details or of abstraction of the map and (3) integrated web-based blog for collecting community feedback. NaviCell can be easily used by experts in the field of molecular biology for studying molecular entities of interest in the context of signaling pathways and crosstalk between pathways within a global signaling network. NaviCell allows both exploration of detailed molecular mechanisms represented on the map and a more abstract view of the map up to a top-level modular representation. NaviCell greatly facilitates curation, maintenance and updating the comprehensive maps of molecular interactions in an interactive and user-friendly fashion due to an imbedded blogging system. Conclusions NaviCell provides user-friendly exploration of large-scale maps of molecular interactions, thanks to Google Maps and WordPress interfaces, with which many users are already familiar. Semantic zooming which is used for navigating geographical maps is adopted for molecular maps in NaviCell, making any level of visualization readable. In addition, NaviCell provides a framework for community-based curation of maps. PMID:24099179

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.

PubMed

Kuperstein, Inna; Cohen, David P A; Pook, Stuart; Viara, Eric; Calzone, Laurence; Barillot, Emmanuel; Zinovyev, Andrei

2013-10-07

Molecular biology knowledge can be formalized and systematically represented in a computer-readable form as a comprehensive map of molecular interactions. There exist an increasing number of maps of molecular interactions containing detailed and step-wise description of various cell mechanisms. It is difficult to explore these large maps, to organize discussion of their content and to maintain them. Several efforts were recently made to combine these capabilities together in one environment, and NaviCell is one of them. NaviCell is a web-based environment for exploiting large maps of molecular interactions, created in CellDesigner, allowing their easy exploration, curation and maintenance. It is characterized by a combination of three essential features: (1) efficient map browsing based on Google Maps; (2) semantic zooming for viewing different levels of details or of abstraction of the map and (3) integrated web-based blog for collecting community feedback. NaviCell can be easily used by experts in the field of molecular biology for studying molecular entities of interest in the context of signaling pathways and crosstalk between pathways within a global signaling network. NaviCell allows both exploration of detailed molecular mechanisms represented on the map and a more abstract view of the map up to a top-level modular representation. NaviCell greatly facilitates curation, maintenance and updating the comprehensive maps of molecular interactions in an interactive and user-friendly fashion due to an imbedded blogging system. NaviCell provides user-friendly exploration of large-scale maps of molecular interactions, thanks to Google Maps and WordPress interfaces, with which many users are already familiar. Semantic zooming which is used for navigating geographical maps is adopted for molecular maps in NaviCell, making any level of visualization readable. In addition, NaviCell provides a framework for community-based curation of maps.

Preliminary Studies of the Structural Characteristics of the Lubao Fault using 2D High Resolution Shallow Seismic Reflection Profile

NASA Astrophysics Data System (ADS)

Bonus, A. A. B.; Lagmay, A. M. A.; Rodolfo, K. S.

2016-12-01

The Lubao fault, located in the province of Pampanga, Philippines, is part of the Bataan Volcanic Arc Complex (BVAC). Active faults within and around the BVAC include the East Zambales and Iba faults; according to the official active faults map of the Philippine Institute of Volcanology and Seismology (PHIVOLCS) there are no other existing active faults in the area. The Lubao Fault distinctly separates wetlands to the northeast and dry alluvial plains to the northwest of Manila Bay. Long term subsidence and high sedimentation rates were observed in the fault and over the past 1.5 thousand years, the northeastern block has dropped 3.5 meters. Along the southwest flank of Mount Natib, tectonic structures were identified using surface mapping and remote sensing. The Persistent Scattering Interferometric Synthetic Aperture Radar (PSInSAR) data results of Eco et al. in 2015 shows uplifts and subsidence in the BVAC area delineating the Lubao Fault. A 480-meter seismic reflection line was laid down perpendicular to the fault with a recording system consisting of 48 channels of Geometrics geophones spaced 10 meters apart. Acquired data were processed using the standard seismic reflection processing sequence by Yilmaz 2001. This preliminary study produced a high resolution subsurface profile of the Lubao fault in the village of San Rafael, Lubao where it is well manifested. The velocity model integrated by stratigraphic data of drilled core shows subsurface lithology. The depth converted profile reveals clear structures and dipping segments which indicates a history of movement along the Lubao fault. Discontinuity of reflectors, either offsets or breaks, are considered structures along the subsurface of the study area. Additional structural mapping and seismic lines along the projected fault are planned in the future to further detail the characteristics of the Lubao Fault. The surface observations made by other researchers coupled with the subsurface seismic profile mapping of this study hopes to clearly delineate and characterize the Lubao Fault.

Forest Connectivity Regions of Canada Using Circuit Theory and Image Analysis

PubMed Central

Pelletier, David; Lapointe, Marc-Élie; Wulder, Michael A.; White, Joanne C.; Cardille, Jeffrey A.

2017-01-01

Ecological processes are increasingly well understood over smaller areas, yet information regarding interconnections and the hierarchical nature of ecosystems remains less studied and understood. Information on connectivity over large areas with high resolution source information provides for both local detail and regional context. The emerging capacity to apply circuit theory to create maps of omnidirectional connectivity provides an opportunity for improved and quantitative depictions of forest connectivity, supporting the formation and testing of hypotheses about the density of animal movement, ecosystem structure, and related links to natural and anthropogenic forces. In this research, our goal was to delineate regions where connectivity regimes are similar across the boreal region of Canada using new quantitative analyses for characterizing connectivity over large areas (e.g., millions of hectares). Utilizing the Earth Observation for Sustainable Development of forests (EOSD) circa 2000 Landsat-derived land-cover map, we created and analyzed a national-scale map of omnidirectional forest connectivity at 25m resolution over 10000 tiles of 625 km2 each, spanning the forested regions of Canada. Using image recognition software to detect corridors, pinch points, and barriers to movements at multiple spatial scales in each tile, we developed a simple measure of the structural complexity of connectivity patterns in omnidirectional connectivity maps. We then mapped the Circuitscape resistance distance measure and used it in conjunction with the complexity data to study connectivity characteristics in each forested ecozone. Ecozone boundaries masked substantial systematic patterns in connectivity characteristics that are uncovered using a new classification of connectivity patterns that revealed six clear groups of forest connectivity patterns found in Canada. The resulting maps allow exploration of omnidirectional forest connectivity patterns at full resolution while permitting quantitative analyses of connectivity over broad areas, informing modeling, planning and monitoring efforts. PMID:28146573

Spatial thermal radiometry contribution to the Massif armoricain and the Massif central (France) litho-structural study

NASA Technical Reports Server (NTRS)

Scanvic, J. Y. (Principal Investigator)

1980-01-01

The author has identified the following significant results. Although the limited number of images received did not permit construction of a thermal inertia map, important geological details were obtained in the areas of lithology and tectonics. Interpretation of day, night, and seasonal imagery resulted in differentiating broad calcareous and dolomitic units in the Causse Plateau. In the Massif amoricain, some granite massifs were delineated which were not observed by LANDSAT. Neotectonic faults were also revealed.

Publications - Beikman, H.M., 1980 | Alaska Division of Geological &

Science.gov Websites

main content USGS Beikman, H.M., 1980 Publication Details Title: Geologic map of Alaska Authors Warehouse Bibliographic Reference Beikman, H.M., 1980, Geologic map of Alaska: U.S. Geological Survey, 1 USGS website Maps & Other Oversized Sheets Maps & Other Oversized Sheets Sheet 1 Geologic Map

Structure and dynamics of Ebola virus matrix protein VP40 by a coarse-grained Monte Carlo simulation

NASA Astrophysics Data System (ADS)

Pandey, Ras; Farmer, Barry

Ebola virus matrix protein VP40 (consisting of 326 residues) plays a critical role in viral assembly and its functions such as regulation of viral transcription, packaging, and budding of mature virions into the plasma membrane of infected cells. How does the protein VP40 go through structural evolution during the viral life cycle remains an open question? Using a coarse-grained Monte Carlo simulation we investigate the structural evolution of VP40 as a function of temperature with the input of a knowledge-based residue-residue interaction. A number local and global physical quantities (e.g. mobility profile, contact map, radius of gyration, structure factor) are analyzed with our large-scale simulations. Our preliminary data show that the structure of the protein evolves through different state with well-defined morphologies which can be identified and quantified via a detailed analysis of structure factor.

The Structure Of The Gaia Deployable Sunshield Assembly

NASA Astrophysics Data System (ADS)

Pereira, Carlos; Urgoiti, Eduardo; Pinto, Inaki

2012-07-01

GAIA is an ESA mission with launch date in 2013. Its main objective is to map the stars. After launch it will unfold a 10.2 m diameter sunshield .The structure of this shield consists of twelve 3.5 meter long composite trusses which act as scaffold to two multilayer insulation blankets. Due to thermal stability constraints the planarity of the shield must be better than 1.0 mm. The trusses are therefore lightweight structures capable of withstanding the launch loads and once deployed, the thermal environment of the spacecraft with a minimum of distortion. This paper details: • The material selection for the composite structure • Validation of the chosen materials and truss layout • The modification of manufacturing process in order to lightweight the structure • The extensive structural and thermal stability testing The sunshield has been delivered to the satellite prime after successful mechanical, thermal and deployment tests.

Hybrid cloud and cluster computing paradigms for life science applications

PubMed Central

2010-01-01

Background Clouds and MapReduce have shown themselves to be a broadly useful approach to scientific computing especially for parallel data intensive applications. However they have limited applicability to some areas such as data mining because MapReduce has poor performance on problems with an iterative structure present in the linear algebra that underlies much data analysis. Such problems can be run efficiently on clusters using MPI leading to a hybrid cloud and cluster environment. This motivates the design and implementation of an open source Iterative MapReduce system Twister. Results Comparisons of Amazon, Azure, and traditional Linux and Windows environments on common applications have shown encouraging performance and usability comparisons in several important non iterative cases. These are linked to MPI applications for final stages of the data analysis. Further we have released the open source Twister Iterative MapReduce and benchmarked it against basic MapReduce (Hadoop) and MPI in information retrieval and life sciences applications. Conclusions The hybrid cloud (MapReduce) and cluster (MPI) approach offers an attractive production environment while Twister promises a uniform programming environment for many Life Sciences applications. Methods We used commercial clouds Amazon and Azure and the NSF resource FutureGrid to perform detailed comparisons and evaluations of different approaches to data intensive computing. Several applications were developed in MPI, MapReduce and Twister in these different environments. PMID:21210982

UAS close range remote sensing for mapping coastal environments

NASA Astrophysics Data System (ADS)

Papakonstantinou, Apostolos; Topouzelis, Kostantinos; Doukari, Michaela

2017-09-01

Coastline change and marine litter concentration in shoreline zones are two different emerging problems indicating the vulnerability as well as the quality of a coastal environment. Both problems present spatiotemporal changes due to weather and anthropogenic factors. Traditionally spatiotemporal changes in coastal environments are monitored using high-resolution satellite images and manned surveys. The last years, Unmanned Aerial Systems (UAS) are used as additional tool for monitoring environmental phenomena in sensitive coastal areas. In this study, two different case studies for mapping emerging coastal phenomena i.e. coastline changes and marine litter in Lesvos island, are presented. Both phenomena have increasing interest among scientists monitoring sensitive coastal areas. This paper outlines the integration of UAS for data acquisition and Structure from Motion (SfM) pipeline for the visualization of selected coastal areas in the Aegean Sea. The followed UAS-SfM methodology produces very detailed orthophoto maps. This high resolution spatial information is used for mapping and detecting primarily, marine litter on coastal and underwater zones and secondly, coastline changes and coastal erosion. More specific the produced orthophoto maps analyzed through GIS and with the use of the appropriate cartographic techniques the objective environmental parameters were mapped. Results showed that UAS-SfM pipeline produces geoinformation with high accuracy and spatial resolution that helps scientists to map with confidence environmental changes that take place in shoreline zones.

Hybrid cloud and cluster computing paradigms for life science applications.

PubMed

Qiu, Judy; Ekanayake, Jaliya; Gunarathne, Thilina; Choi, Jong Youl; Bae, Seung-Hee; Li, Hui; Zhang, Bingjing; Wu, Tak-Lon; Ruan, Yang; Ekanayake, Saliya; Hughes, Adam; Fox, Geoffrey

2010-12-21

Clouds and MapReduce have shown themselves to be a broadly useful approach to scientific computing especially for parallel data intensive applications. However they have limited applicability to some areas such as data mining because MapReduce has poor performance on problems with an iterative structure present in the linear algebra that underlies much data analysis. Such problems can be run efficiently on clusters using MPI leading to a hybrid cloud and cluster environment. This motivates the design and implementation of an open source Iterative MapReduce system Twister. Comparisons of Amazon, Azure, and traditional Linux and Windows environments on common applications have shown encouraging performance and usability comparisons in several important non iterative cases. These are linked to MPI applications for final stages of the data analysis. Further we have released the open source Twister Iterative MapReduce and benchmarked it against basic MapReduce (Hadoop) and MPI in information retrieval and life sciences applications. The hybrid cloud (MapReduce) and cluster (MPI) approach offers an attractive production environment while Twister promises a uniform programming environment for many Life Sciences applications. We used commercial clouds Amazon and Azure and the NSF resource FutureGrid to perform detailed comparisons and evaluations of different approaches to data intensive computing. Several applications were developed in MPI, MapReduce and Twister in these different environments.

Heat capacity mapping radiometer for AEM spacecraft

NASA Technical Reports Server (NTRS)

Sonnek, G. E.

1977-01-01

The operation, maintenance, and integration of the applications explorer mission heat capacity mapping radiometer is illustrated in block diagrams and detail schematics of circuit functions. Data format and logic timing diagrams are included along with radiometric and electronic calibration data. Mechanical and electrical configuration is presented to provide interface details for integration of the HCMR instrument to AEM spacecraft.

9. Town of Hamden, 1868 Map detail photocopied from F. ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

9. Town of Hamden, 1868 Map detail photocopied from F. W. Beers, et al., Atlas of New Haven County, Connecticut (New York, 1868), p. 25. Shows the newly created Lake Whitney and, one quarter mile south of the armory, a 'Rifle Factory.' - Eli Whitney Armory, West of Whitney Avenue, Armory Street Vicinity, Hamden, New Haven County, CT

Seeing the trees for the forest: mapping vegetation biodiversity in coastal Oregon forests.

Treesearch

Sally. Duncan

2003-01-01

In order to address policy issues relating to biodiversity, productivity, and sustainability, we need detailed understanding of forest vegetation at broad geographic and time scales. Most existing maps developed from satellite imagery describe only general characteristics of the upper canopy. Detailed vegetation data are available from regional grids of field plots,...

7. Detail, 1885 Sanborn Fire Insurance Map, Carlin, Nevada, in ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

7. Detail, 1885 Sanborn Fire Insurance Map, Carlin, Nevada, in collection of Nevada Historical Society, Reno; credit Nevada Historical Society. Engine Stores Building is adjacent to R.R. Repair Shop, and is shown containing Library, Cooper Shop, Office, Ware Room, and Boiler & Engine Room. - Southern Pacific Railroad, Carlin Shops, Foot of Sixth Street, Carlin, Elko County, NV

Transpressional deformation style and AMS fabrics adjacent to the southernmost segment of the San Andreas fault, Durmid Hill, CA

NASA Astrophysics Data System (ADS)

French, M.; Wojtal, S. F.; Housen, B.

2006-12-01

In the Salton Trough, the trace of the San Andreas Fault (SAF) ends where it intersects the NNW-trending Brawley seismic zone at Durmid Hill (DH). The topographic relief of DH is a product of faulting and folding of Pleistocene Borrego Formation strata (Babcock, 1974). Burgmann's (1991) detailed mapping and analysis of the western part of DH showed that the folds and faults accommodate transpression. Key to Burgmann's work was the recognition that the ~2m thick Bishop Ash, a prominent marker horizon, has been elongated parallel to the hinges of folds and boudinaged. We are mapping in detail the eastern portion of DH, nearer to the trace of the SAF. Folds in the eastern part of DH are tighter and thrust faulting is more prominent, consistent with greater shortening magnitude oblique to the SAF. Boudinage of the ash layer again indicates elongation parallel to fold hinges and subparallel to the SAF. The Bishop Ash locally is <1m thick along fold limbs in eastern DH, suggesting that significant continuous deformation accompanied the development of map-scale features. We measured anisotropy of magnetic susceptibility (AMS) fabrics in the Bishop Ash in order to assess continuous deformation in the Ash at DH. Because the Bishop Ash at DH is altered, consisting mainly of silica glass and clay minerals, samples from DH have significantly lower magnetic susceptibilities than Bishop Ash samples from elsewhere in the Salton Trough. With such low susceptibilities, there is significant scatter in the orientation of magnetic foliation and lineation in our samples. Still, in some Bishop samples within 1 km of the SAF, magnetic foliation is consistent with fold-related flattening. Magnetic lineation in these samples is consistently sub-parallel to fold hinges, parallel to the elongation direction inferred from boudinage. Even close to the trace of the SAF, this correlation breaks down in map-scale zones where fold hinge lines change attitude, fold shapes change, and the distribution and orientations of fractures and veins changes. These zones of structural complication separate broader regions of more uniform deformation patterns. Together, the geometry of structures and AMS fabrics suggest that deformation in eastern DH occurs by the distortion and reorientation of more or less coherent blocks separated by narrow zones where structural elements change orientation.

Hypogeal geological survey in the "Grotta del Re Tiberio" natural cave (Apennines, Italy): a valid tool for reconstructing the structural setting

NASA Astrophysics Data System (ADS)

Ghiselli, Alice; Merazzi, Marzio; Strini, Andrea; Margutti, Roberto; Mercuriali, Michele

2011-06-01

As karst systems are natural windows to the underground, speleology, combined with geological surveys, can be useful tools for helping understand the geological evolution of karst areas. In order to enhance the reconstruction of the structural setting in a gypsum karst area (Vena del Gesso, Romagna Apennines), a detailed analysis has been carried out on hypogeal data. Structural features (faults, fractures, tectonic foliations, bedding) have been mapped in the "Grotta del Re Tiberio" cave, in the nearby gypsum quarry tunnels and open pit benches. Five fracture systems and six fault systems have been identified. The fault systems have been further analyzed through stereographic projections and geometric-kinematic evaluations in order to reconstruct the relative chronology of these structures. This analysis led to the detection of two deformation phases. The results permitted linking of the hypogeal data with the surface data both at a local and regional scale. At the local scale, fracture data collected in the underground have been compared with previous authors' surface data coming from the quarry area. The two data sets show a very good correspondence, as every underground fracture system matches with one of the surface fracture system. Moreover, in the cave, a larger number of fractures belonging to each system could be mapped. At the regional scale, the two deformation phases detected can be integrated in the structural setting of the study area, thereby enhancing the tectonic interpretation of the area ( e.g., structures belonging to a new deformation phase, not reported before, have been identified underground). The structural detailed hypogeal survey has, thus, provided very useful data, both by integrating the existing information and revealing new data not detected at the surface. In particular, some small structures ( e.g., displacement markers and short fractures) are better preserved in the hypogeal environment than on the surface where the outcropping gypsum is more exposed to dissolution and recrystallization. The hypogeal geological survey, therefore, can be considered a powerful tool for integrating the surface and log data in order to enhance the reconstruction of the deformational history and to get a three-dimensional model of the bedrock in karst areas.

High-resolution topography along surface rupture of the 16 October 1999 Hector Mine, California (Mw 7.1) from airborne laser swath mapping

USGS Publications Warehouse

Hudnutt, K.W.; Borsa, A.; Glennie, C.; Minster, J.-B.

2002-01-01

In order to document surface rupture associated with the Hector Mine earthquake, in particular, the area of maximum slip and the deformed surface of Lavic Lake playa, we acquired high-resolution data using relatively new topographic-mapping methods. We performed a raster-laser scan of the main surface breaks along the entire rupture zone, as well as along an unruptured portion of the Bullion fault. The image of the ground surface produced by this method is highly detailed, comparable to that obtained when geologists make particularly detailed site maps for geomorphic or paleoseismic studies. In this case, however, for the first time after a surface-rupturing earthquake, the detailed mapping is along the entire fault zone rather than being confined to selected sites. These data are geodetically referenced, using the Global Positioning System, thus enabling more accurate mapping of the rupture traces. In addition, digital photographs taken along the same flight lines can be overlaid onto the precise topographic data, improving terrain visualization. We demonstrate the potential of these techniques for measuring fault-slip vectors.

Continuous Mapping of Tunnel Walls in a Gnss-Denied Environment

NASA Astrophysics Data System (ADS)

Chapman, Michael A.; Min, Cao; Zhang, Deijin

2016-06-01

The need for reliable systems for capturing precise detail in tunnels has increased as the number of tunnels (e.g., for cars and trucks, trains, subways, mining and other infrastructure) has increased and the age of these structures and, subsequent, deterioration has introduced structural degradations and eventual failures. Due to the hostile environments encountered in tunnels, mobile mapping systems are plagued with various problems such as loss of GNSS signals, drift of inertial measurements systems, low lighting conditions, dust and poor surface textures for feature identification and extraction. A tunnel mapping system using alternate sensors and algorithms that can deliver precise coordinates and feature attributes from surfaces along the entire tunnel path is presented. This system employs image bridging or visual odometry to estimate precise sensor positions and orientations. The fundamental concept is the use of image sequences to geometrically extend the control information in the absence of absolute positioning data sources. This is a non-trivial problem due to changes in scale, perceived resolution, image contrast and lack of salient features. The sensors employed include forward-looking high resolution digital frame cameras coupled with auxiliary light sources. In addition, a high frequency lidar system and a thermal imager are included to offer three dimensional point clouds of the tunnel walls along with thermal images for moisture detection. The mobile mapping system is equipped with an array of 16 cameras and light sources to capture the tunnel walls. Continuous images are produced using a semi-automated mosaicking process. Results of preliminary experimentation are presented to demonstrate the effectiveness of the system for the generation of seamless precise tunnel maps.

In silico approaches reveal the potential for DNA sequence-dependent histone octamer affinity to influence chromatin structure in vivo.

PubMed

Fraser, Ross M; Allan, James; Simmen, Martin W

2006-12-08

Nucleosome positioning signals embedded within the DNA sequence have the potential to influence the detailed structure of the higher-order chromatin fibre. In two previous studies of long stretches of DNA, encompassing the chicken beta-globin and ovine beta-lactoglobulin genes, respectively, we mapped the relative affinity of every site for the core histone octamer. In both cases a periodic arrangement of the in vitro positioning sites suggests that they might influence the folding of a nucleosome chain into higher-order structure; this hypothesis was borne out in the case of the beta-lactoglobulin gene, where the distribution of the in vitro positioning sites is related to the positions nucleosomes actually occupy in sheep liver cells. Here, we have exploited the in vitro nucleosome positioning datasets to simulate nucleosomal organisation using in silico approaches. We use the high-resolution, quantitative positioning maps to define a one-dimensional positioning energy lattice, which can be populated with a defined number of nucleosomes. Monte Carlo techniques are employed to simulate the behaviour of the model at equilibrium to produce a set of configurations, which provide a probability-based occupancy map. Employing a variety of techniques we show that the occupancy maps are a sensitive function of the histone octamer density (nucleosome repeat length) and find that a minimal change in this property can produce dramatic localised changes in structure. Although simulations generally give rise to regular periodic nucleosomal arrangements, they often show octamer density-dependent discontinuities, which tend to co-localise with sequences that adopt distinctive chromatin structure in vivo. Furthermore, the overall organisation of simulated chromatin structures are more closely related to the situation in vivo than is the original in vitro positioning data, particularly at a nucleosome density corresponding to the in vivo state. Although our model is simplified, we argue that it provides a unique insight into the influence that DNA sequence can have in determining chromatin structure and could serve as a useful basis for the incorporation of other parameters.

Teleseismic surface wave study of S-wave velocity structure in Southern California

NASA Astrophysics Data System (ADS)

Prindle-Sheldrake, K. L.; Tanimoto, T.

2002-12-01

We report on a 3D S-wave velocity structure derived from teleseismic Rayleigh and Love waves using TriNet broadband seismic data. Phase velocity maps, constructed between 20 and 55 mHz for Rayleigh waves and between 25 and 45 mHz for Love waves, were inverted for S-wave velocity structure at depth. Our starting model is SCEC 2.2, which has detailed crustal structure, but laterally homogeneous upper mantle structure. Depth resolution from the data set is good from the surface to approximately 100 km, but deteriorates rapidly beyond this depth. Our analysis indicates that, while Rayleigh wave data are mostly sensitive to mantle structure, Love wave data require some modifications of crustal structure from SCEC 2.2 model. Various regions in Southern California have different seismic-velocity signatures in terms of fast and slow S-wave velocities: In the Southern Sierra, both the crust and mantle are slow. In the Mojave desert, mid-crustal depths tend to show slow velocities, which are already built into SCEC 2.2. In the Transverse Ranges, the lower crust and mantle are both fast. Our Love wave results require much faster crustal velocity than those in SCEC 2.2 in this region. In the Peninsular ranges, both the crust and mantle are fast with mantle fast velocity extending to about 70 km. This is slightly more shallow than the depth extent under the Transverse Ranges, yet it is surprisingly deep. Under the Salton Sea, the upper crust is very slow and the upper mantle is also slow. However, these two slow velocity layers are separated by faster velocity lower crust which creates a distinct contrast with respect to the adjacent slow velocity regions. Existence of such a relatively fast layer, sandwiched by slow velocities, are related to features in phase velocity maps, especially in the low frequency Love wave phase velocity map (25 mHz) and the high frequency Rayleigh wave phase velocity maps (above 40 mHz). Such a feature may be related to partial melting processes under the Salton Sea.

Digital Bedrock Compilation: A Geodatabase Covering Forest Service Lands in California

NASA Astrophysics Data System (ADS)

Elder, D.; de La Fuente, J. A.; Reichert, M.

2010-12-01

This digital database contains bedrock geologic mapping for Forest Service lands within California. This compilation began in 2004 and the first version was completed in 2005. Second publication of this geodatabase was completed in 2010 and filled major gaps in the southern Sierra Nevada and Modoc/Medicine Lake/Warner Mountains areas. This digital map database was compiled from previously published and unpublished geologic mapping, with source mapping and review from California Geological Survey, the U.S. Geological Survey and others. Much of the source data was itself compilation mapping. This geodatabase is huge, containing ~107,000 polygons and ~ 280,000 arcs. Mapping was compiled from more than one thousand individual sources and covers over 41,000,000 acres (~166,000 km2). It was compiled from source maps at various scales - from ~ 1:4,000 to 1:250,000 and represents the best available geologic mapping at largest scale possible. An estimated 70-80% of the source information was digitized from geologic mapping at 1:62,500 scale or better. Forest Service ACT2 Enterprise Team compiled the bedrock mapping and developed a geodatabase to store this information. This geodatabase supports feature classes for polygons (e.g, map units), lines (e.g., contacts, boundaries, faults and structural lines) and points (e.g., orientation data, structural symbology). Lookup tables provide detailed information for feature class items. Lookup/type tables contain legal values and hierarchical groupings for geologic ages and lithologies. Type tables link coded values with descriptions for line and point attributes, such as line type, line location and point type. This digital mapping is at the core of many quantitative analyses and derivative map products. Queries of the database are used to produce maps and to quantify rock types of interest. These include the following: (1) ultramafic rocks - where hazards from naturally occurring asbestos are high, (2) granitic rocks - increased erosion hazards, (3) limestone, chert, sedimentary rocks - paleontological resources (Potential Fossil Yield Classification maps), (4) calcareous rocks (cave resources, water chemistry), and (5) lava flows - lava tubes (more caves). Map unit groupings (e.g., belts, terranes, tectonic & geomorphic provinces) can also be derived from the geodatabase. Digital geologic mapping was used in ground water modeling to predict effects of tunneling through the San Bernardino Mountains. Bedrock mapping is used in models that characterize watershed sediment regimes and quantify anthropogenic influences. When combined with digital geomorphology mapping, this geodatabase helps to assess landslide hazards.

Hydrology of the Helena area bedrock, west-central Montana, 1993-98; with a section on geologic setting and a generalized bedrock geologic map

USGS Publications Warehouse

Thamke, Joanna N.; Reynolds, Mitchell W.

2000-01-01

The Generalized Bedrock Geologic Map of the Helena Area, West-Central Montana (plate 1 in the report) provides an intermediate-scale overview of bedrock in the Helena area. The geologic map has been compiled at a scale of 1:100,000 from the most widely available sources of geologic map information (see index to geologic mapping on pl. 1). That information has been updated by M.W. Reynolds for this report with more recent geologic mapping and field revision of published maps. All well locations and all bedrock units penetrated during drilling have been confirmed on geologic maps at the largest scale available. Source geologic maps are all at scales larger than 1:100,000 scale. Care has been taken to ensure accurate representation of the original geology at the compilation scale. However, positional accuracy of some features might be somewhat diminished at the smaller scale of the base map when compared with the original data source. Also, line thicknesses for contacts and faults necessarily assume a greater width, relative to the real geologic feature, at the scale of the generalized map than on any original map. The map is not intended for large-scale, site-specific detailed planning. Bedrock units throughout the Helena area are generally covered by young surficial deposits such as alluvium, colluvium, glacial debris, or windblown sediment. Thickness of such deposits varies from veneers through which the underlying bedrock is clearly discernible to major thicknesses that conceal all underlying bedrock and structure. Boundaries of major accumulations of surficial deposits are attributed separately from bedrock contacts. These boundaries should not be considered precise at the map scale or at larger scales. Boundaries shown may be less accurate positionally than bedrock contacts and faults because (1) surficial deposits commonly thin to a knife edge; (2) different mappers will interpret the edge differently when drawing a boundary; or (3) the original geologic map maker was concerned principally with bedrock units and structure and thus overlooked, or did not originally map as consistently, some surficial deposits. Veneers of surficial sediment, when saturated, can be local sources of recharge to underlying bedrock. Use of the generalized map to define their distribution does not substitute for site specific mapping of such deposits. Specific knowledge is needed to determine the water-bearing properties of the geologic units at and surrounding a site because the units, including the igneous and metamorphic rocks, have internal differences in stratigraphy, composition, mineralogy and grain size or crystallinity. These differences, together with structural imprints such as faults, folds, and the spacing, orientation, degree of openness of fractures, and extent and type of mineral filling in fractures and faults, all affect the ability of rocks to store and transmit water.

Subsurface Investigation of the Neogene Mygdonian Basin, Greece Using Magnetic Data

NASA Astrophysics Data System (ADS)

Ibraheem, Ismael M.; Gurk, Marcus; Tougiannidis, Nikolaos; Tezkan, Bülent

2018-02-01

A high-resolution ground and marine magnetic survey was executed to determine the structure of the subsurface and the thickness of the sedimentary cover in the Mygdonian Basin. A spacing of approximately 250 m or 500 m between measurement stations was selected to cover an area of 15 km × 22 km. Edge detectors such as total horizontal derivative (THDR), analytic signal (AS), tilt derivative (TDR), enhanced total horizontal gradient of tilt derivative (ETHDR) were applied to map the subsurface structure. Depth was estimated by power spectrum analysis, tilt derivative, source parameter imaging (SPI), and 2D-forward modeling techniques. Spectral analysis and SPI suggest a depth to the basement ranging from near surface to 600 m. For some selected locations, depth was also calculated using the TDR technique suggesting depths from 160 to 400 m. 2D forward magnetic modeling using existing boreholes as constraints was carried out along four selected profiles and confirmed the presence of alternative horsts and grabens formed by parallel normal faults. The dominant structural trends inferred from THDR, AS, TDR, and ETHDR are N-S, NW-SE, NE-SW and E-W. This corresponds with the known structural trends in the area. Finally, a detailed structural map showing the magnetic blocks and the structural architecture of the Mygdonian Basin was drawn up by collating all of the results.

Structure-activity relationship of the ionic cocrystal: 5-amino-2-naphthalene sulfonate·ammonium ions for pharmaceutical applications

NASA Astrophysics Data System (ADS)

Sangeetha, M.; Mathammal, R.

2018-02-01

The ionic cocrystals of 5-amino-2-naphthalene sulfonate · ammonium ions (ANSA-ṡNH4+) were grown under slow evaporation method and examined in detail for pharmaceutical applications. The crystal structure and intermolecular interactions were studied from the single X-ray diffraction analysis and the Hirshfeld surfaces. The 2D fingerprint plots displayed the inter-contacts possible in the ionic crystal. Computational DFT method was established to determine the structural, physical and chemical properties. The molecular geometries obtained from the X-ray studies were compared with the optimized geometrical parameters calculated using DFT/6-31 + G(d,p) method. The band gap energy calculated from the UV-Visible spectral analysis and the HOMO-LUMO energy gap are compared. The theoretical UV-Visible calculations helped in determining the type of electronic transition taking place in the title molecule. The maximum absorption bands and transitions involved in the molecule represented the drug reaction possible. Non-linear optical properties were characterized from SHG efficiency measurements experimentally and the NLO parameters are also calculated from the optimized structure. The reactive sites within the molecule are detailed from the MEP surface maps. The molecular docking studies evident the structure-activity of the ionic cocrystal for anti-cancer drug property.

How to compare the faces of the Earth? Walachia in mid-19th century and nowadays

NASA Astrophysics Data System (ADS)

Bartos-Elekes, Zsombor; Magyari-Sáska, Zsolt; Timár, Gábor; Imecs, Zoltán

2014-05-01

In 1864 a detailed map was made about Walachia, its title is Charta României Meridionale (Map of Southern Romania), it has 112 map sheets, it is often called after his draughtsman: Szathmári's map. The map has an outstanding position in the history of Romanian cartography, because it indicates a turning-point. Before the map, foreigners (Austrians and Russians) had made topographic maps about this vassal principality of the Ottoman Empire. The Austrian topographic survey (1855-1859) - which served as a basis for this map - was the last one and the most detailed of these surveys. The map was made between the personal-union (1859) and independence (1878) of the Danubian Principalities. This map was the first (to a certain extent) own map of the forming country. In consequence of this survey and map, the Romanian mapping institute was founded, which one - based on this survey and map - began the topographic mapping of the country. In the Romanian scientific literature imperfect and contradictory information has been published about this map. Only a dozen copies of the map were kept in few map collections; the researchers could have reached them with difficulties. During our research we processed the circumstances of the survey and mapmaking discovering its documentation in the archives of Vienna, as well as using the Romanian, Hungarian and German scientific literature. We found the copies in map collections from Vienna to Bucharest. We digitized all the map sheets from different collections. We calculated the parameters of the used geodetic datum and map projection. We published on the web, such we made the map reachable for everybody. The map can be viewed in different zoom levels; can be downloaded; settlements can be found using the place name index; areas can be exported in modern projection, so the conditions of that time could be compared with today's reality. Our poster presents on the one hand the survey and the map realized in mid-19th century and our digital methods, on the other hand presents the faces of the Earth in Walachia -comparing details of the geo-referenced map from 19th century with maps of nowadays. This work was supported by a grant of the Romanian National Authority for Scientific Research, CNCS - UEFISCDI, project number PN-II-RU-TE-2011-3-0125.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoak, T.E.; Decker, A.D.

Mesaverde Group reservoirs in the Piceance Basin, Western Colorado contain a large reservoir base. Attempts to exploit this resource base are stymied by low permeability reservoir conditions. The presence of abundant natural fracture systems throughout this basin, however, does permit economic production. Substantial production is associated with fractured reservoirs in Divide Creek, Piceance Creek, Wolf Creek, White River Dome, Plateau, Shire Gulch, Grand Valley, Parachute and Rulison fields. Successful Piceance Basin gas production requires detailed information about fracture networks and subsurface gas and water distribution in an overall gas-centered basin geometry. Assessment of these three parameters requires an integrated basinmore » analysis incorporating conventional subsurface geology, seismic data, remote sensing imagery analysis, and an analysis of regional tectonics. To delineate the gas-centered basin geometry in the Piceance Basin, a regional cross-section spanning the basin was constructed using hydrocarbon and gamma radiation logs. The resultant hybrid logs were used for stratigraphic correlations in addition to outlining the trans-basin gas-saturated conditions. The magnitude of both pressure gradients (paludal and marine intervals) is greater than can be generated by a hydrodynamic model. To investigate the relationships between structure and production, detailed mapping of the basin (top of the Iles Formation) was used to define subtle subsurface structures that control fractured reservoir development. The most productive fields in the basin possess fractured reservoirs. Detailed studies in the Grand Valley-Parachute-Rulison and Shire Gulch-Plateau fields indicate that zones of maximum structural flexure on kilometer-scale structural features are directly related to areas of enhanced production.« less

Geologic Map of the Eaton Reservoir Quadrangle, Larimer County, Colorado and Albany County, Wyoming

USGS Publications Warehouse

Workman, Jeremiah B.

2008-01-01

New geologic mapping of the Eaton Reservoir 7.5' quadrangle defines geologic relationships in the northern Front Range along the Colorado/Wyoming border approximately 35 km south of Laramie, Wyo. Previous mapping within the quadrangle was limited to regional reconnaissance mapping (Tweto, 1979; Camp, 1979; Burch, 1983) and some minor site-specific studies (Carlson and Marsh, 1986; W. Braddock, unpub. mapping, 1982). Braddock and others (1989) mapped the Diamond Peak 7.5' quadrangle to the east, Burch (1983) mapped rocks of the Rawah batholith to the south, W. Braddock (unpub. mapping, 1981) mapped the Sand Creek Pass 7.5' quadrangle to the west, and Ver Ploeg and Boyd (2000) mapped the Laramie 30' x 60' quadrangle to the north. Field work was completed during 2005 and 2006 and the mapping was compiled at a scale of 1:24,000. Minimal petrographic work and isotope dating was done in connection with the present mapping, but detailed petrographic and isotope studies were carried out on correlative map units in surrounding areas as part of a related regional study of the northern Front Range. Classification of Proterozoic rocks is primarily based upon field observation of bulk mineral composition, macroscopic textural features, and field relationships that allow for correlation with rocks studied in greater detail outside of the map area.

Fifty year canon of solar eclipses: 1986-2035

NASA Technical Reports Server (NTRS)

Espenak, Fred

1986-01-01

A reference of moderately detailed eclipse predictions and maps for use by the professional astronomical community is provided. The general characteristics of every solar eclipse and a detailed set of cylindrical project world maps which show the umbral paths of every solar eclipse from 1901 to 2100 are presented. The geodetic path coordinates and local circumstance on the center line, and a series of orthographic projection maps which show the regions of visibility of both partial and central phases for every eclipse from 1986 through 2035 are also provided.

Assessment of planetary geologic mapping techniques for Mars using terrestrial analogs: The SP Mountain area of the San Francisco Volcanic Field, Arizona

USGS Publications Warehouse

Tanaka, K.L.; Skinner, J.A.; Crumpler, L.S.; Dohm, J.M.

2009-01-01

We photogeologically mapped the SP Mountain region of the San Francisco Volcanic Field in northern Arizona, USA to evaluate and improve the fidelity of approaches used in geologic mapping of Mars. This test site, which was previously mapped in the field, is chiefly composed of Late Cenozoic cinder cones, lava flows, and alluvium perched on Permian limestone of the Kaibab Formation. Faulting and folding has deformed the older rocks and some of the volcanic materials, and fluvial erosion has carved drainage systems and deposited alluvium. These geologic materials and their formational and modificational histories are similar to those for regions of the Martian surface. We independently prepared four geologic maps using topographic and image data at resolutions that mimic those that are commonly used to map the geology of Mars (where consideration was included for the fact that Martian features such as lava flows are commonly much larger than their terrestrial counterparts). We primarily based our map units and stratigraphic relations on geomorphology, color contrasts, and cross-cutting relationships. Afterward, we compared our results with previously published field-based mapping results, including detailed analyses of the stratigraphy and of the spatial overlap and proximity of the field-based vs. remote-based (photogeologic) map units, contacts, and structures. Results of these analyses provide insights into how to optimize the photogeologic mapping of Mars (and, by extension, other remotely observed planetary surfaces). We recommend the following: (1) photogeologic mapping as an excellent approach to recovering the general geology of a region, along with examination of local, high-resolution datasets to gain insights into the complexity of the geology at outcrop scales; (2) delineating volcanic vents and lava-flow sequences conservatively and understanding that flow abutment and flow overlap are difficult to distinguish in remote data sets; (3) taking care to understand that surficial materials (such as alluvium and volcanic ash deposits) are likely to be under-mapped yet are important because they obscure underlying units and contacts; (4) where possible, mapping multiple contact and structure types based on their varying certainty and exposure that reflect the perceived accuracy of the linework; (5) reviewing the regional context and searching for evidence of geologic activity that may have affected the map area yet for which evidence within the map area may be absent; and (6) for multi-authored maps, collectively analyzing the mapping relations, approaches, and methods throughout the duration of the mapping project with the objective of achieving a solid, harmonious product.

Changes in the methodology used in the production of the Spanish CORINE: Uncertainty analysis of the new maps

NASA Astrophysics Data System (ADS)

García-Álvarez, David; Camacho Olmedo, María Teresa

2017-12-01

Since 2012 CORINE has been obtained in Spain from the generalization of a more detailed land cover map (SIOSE). This methodological change has meant the production of a new CORINE map, which is different from the existing ones. To analyze how different the new maps are from the previous ones, as well as the advantages and disadvantages of the new methodology, we carried out a comparison of the CORINE obtained from both methods (traditional and generalization) for the year 2006. The new CORINE is more detailed and it is more coherent with the rest of Spanish Land Use Land Cover (LULC) maps. However, problems have been encountered with regard to the meaning of its classes, the fragmentation of patches and the complexity of its perimeters.

Map showing geology, oil and gas fields, and geologic provinces of the Gulf of Mexico region

USGS Publications Warehouse

French, Christopher D.; Schenk, Christopher J.

2006-01-01

This map was created as part of a worldwide series of geologic maps for the U.S. Geological Survey's World Energy Project. These products are available on CD-ROM and the Internet. The goal of the project is to assess the undiscovered, technically recoverable oil and gas resources of the world. Two previously published digital geologic data sets (U.S. and Caribbean) were clipped to the map extent, while the dataset for Mexico was digitized for this project. Original attributes for all data layers were maintained, and in some cases, graphically merged with common symbology for presentation purposes. The world has been divided into geologic provinces that are used for allocation and prioritization of oil and gas assessments. For the World Energy Project, a subset of those provinces is shown on this map. Each province has a set of geologic characteristics that distinguish it from surrounding provinces. These characteristics may include dominant lithologies, the age of the strata, and/or structural type. The World Geographic Coordinate System of 1984 is used for data storage, and the data are presented in a Lambert Conformal Conic Projection on the OFR 97-470-L map product. Other details about the map compilation and data sources are provided in metadata documents in the data section on this CD-ROM. Several software packages were used to create this map including: Environmental Systems Research Institute, Inc. (ESRI) ArcGIS 8.3, ArcInfo software, Adobe Photoshop CS, Illustrator CS, and Acrobat 6.0.

Epitope mapping of botulinum neurotoxins light chains

PubMed Central

Zdanovsky, Alexey; Zdanovsky, Denis; Zdanovskaia, Maria

2012-01-01

Botulinum neurotoxins (BoNTs) are listed among the most potent biothreat agents. Simultaneously, two out of seven known serotypes of these toxins are used in medicine and cosmetics. This situation calls for development of detailed epitope maps of these toxins. Such maps will help to develop new ways for decreasing damage caused by these toxins if they were to be used as weapons while retaining the therapeutic effect of these toxins used as medicine. Here, we used a library of random fragments of DNA encoding the catalytic domain of botulinum neurotoxin serotype A to identify short epitope-forming sequences. We demonstrated that knowledge of such sequences in a BoNT of one serotype can be used for identification of epitope-forming sequences in other serotypes of BoNTs. We also demonstrated a serodiagnostic value of identified sequences and their ability to retain epitope-specific structures and trigger production of corresponding antibodies, even when they are transferred into a background of a completely alien carrier protein. PMID:22922018

Utilizing ERTS-A imagery for tectonic analysis through study of the Bighorn Mountains Region

NASA Technical Reports Server (NTRS)

Hoppin, R. A. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Preliminary vegetation analysis has been undertaken on MSS scene 1085-17294, Oct. 16, 1973 in the Bighorn region. Forest Service maps showing detailed distribution of dominant forest types have been compared with MSS bands 5 and 7 positive transparencies, enlarged positive prints, and color imagery produced on an Addcol viewer. Patterns on the ERTS imagery match those on the Forest Service maps quite well. A tectonic map ovearlay of MSS band 7 of the Bighorn region reveals a strong concentration of linears in the uplift as compared to basins. Folds in the Bighorn Basin are visible where not covered by post-Paleocene deposits. In regions where far less is known of the geology than in this area, it might be possible to predict the subsurface occurrence of folds and lineaments on the basis of imagery analysis and more confidently explore covered areas for concealed oil structures and mineral deposits.

Benefits Mapping and Analysis Program (BenMAP)

EPA Pesticide Factsheets

This area summarizes the key features of the BenMAP-CE program and links to pages that provide more details regarding the program, the basic principles of air pollution benefits analysis and a link to download the software.

Mapping Venus: Modeling the Magellan Mission.

ERIC Educational Resources Information Center

Richardson, Doug

1997-01-01

Provides details of an activity designed to help students understand the relationship between astronomy and geology. Applies concepts of space research and map-making technology to the construction of a topographic map of a simulated section of Venus. (DDR)

Mapping the True 3D Morphology of Deep-Sea Canyons

NASA Astrophysics Data System (ADS)

Huvenne, V. A.; Masson, D.; Tyler, P. A.; Huehnerbach, V.

2010-12-01

The importance of submarine canyons as ecosystem hotspots and sediment transport pathways has been recognised for decades (e.g. Heezen et al., 1955; Vetter & Dayton, 1998). However, studying canyon systems in detail is a challenge, because of the complexity and steepness of the terrain. Acoustic surveys are hampered by side-echoes, while the high slope angles cause most types of sampling equipment, deployed from surface vessels, to fail. Ship-borne bathymetric surveys tend to represent the canyon topography in an overly smoothed way as a result of their limited resolution in deep water compared to the scale of the terrain variability. Moreover, it is clear that overhanging cliffs cannot be mapped correctly with traditional, downward looking multibeam echosounders. The increasing availability of underwater vehicles, however, opens new opportunities. During summer 2009, we mapped several submarine canyon habitats in detail, using the UK deep-water Remotely Operated Vehicle (ROV) ISIS. In particular, we developed a new methodology to map vertical cliffs and overhangs by placing the high-resolution Simrad SM2000 multibeam system of the ROV in a forward-looking position rather than in the traditional downward-looking configuration. The cliff morphology was then mapped by moving the ROV laterally in parallel passes at different depths. Repeating this approach at different distances from the cliff face, we obtained maps of varying resolution and extent. The low resolution maps provide an overview of the general geological framework, while individual strata and faunal colonies can be recognised on the highest resolution maps. Using point-cloud models, we combined the ship-borne bathymetry with the ROV-based data, in order to obtain a true 3D seabed morphology of the canyon study site, which can be used for fly-throughs, geomorphological analysis or habitat mapping. With this approach, we could visualise the spatial structure and density distribution of a unique and previously unknown cold-water coral reef, formed as a hanging garden under a 1600 m long and 120 m high overhanging wall, at 1350 m water depth in the Whittard Canyon, NE Atlantic margin. Heezen, B.C., Ewing, M. and Menzies, R. (1955). The influence of submarine turbidity currents on abyssal productivity. Oikos, 6, 170-182. Vetter, E.W. & Dayton, P.K. (1998). Macrofaunal communities within and adjacent to a detritus-rich submarine canyon system. Deep-Sea Research II, 45, 25-54.

BOREAS TE-23 Map Plot Data

NASA Technical Reports Server (NTRS)

Rich, Paul M.; Fournier, Robert; Hall, Forrest G. (Editor); Papagno, Andrea (Editor)

2000-01-01

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-23 (Terrestrial Ecology) team collected map plot data in support of its efforts to characterize and interpret information on canopy architecture and understory cover at the BOREAS tower flux sites and selected auxiliary sites from May to August 1994. Mapped plots (typical dimensions 50 m x 60 m) were set up and characterized at all BOREAS forested tower flux and selected auxiliary sites. Detailed measurement of the mapped plots included: (1) stand characteristics (location, density, basal area); (2) map locations diameter at breast height (DBH) of all trees; (3) detailed geometric measures of a subset of trees (height, crown dimensions); and (4) understory cover maps. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Structural and lithologic constraints to mineralization in Aurora, Nevada and Bodie, California mining districts, observed with aerospace geophysical data

NASA Astrophysics Data System (ADS)

Smailbegovic, Amer

This study used a multifaceted approach to investigate the geology and metallogenesis of the Bodie Hills region and the Aurora mining district. The factors influencing regional- and local-scale metallogenesis are compared and discussed in context of the various datasets, analysis techniques and methodologies. The Aurora and Bodie mining districts are located in the Miocene volcanics of the Bodie Hills, north of Mono Lake, on the opposite sides of the Nevada-California state line. From the standpoint of economic geology, both deposits are structurally controlled, low-sulfidation, quartz-adularia-sericite precious metal vein deposits with an extensive alteration halo. The area has been exploited since late 1870s by both underground and minor open pit operations (Aurora), exposing portions of altered andesites, rhyolite flows and tuffs and quartz-adularia-sericite veins. Much of the previous geologic mapping and explanation in Aurora was ad-hoc and primarily in support of the mining operations, without particular interest paid to the system as a whole. Using detailed field mapping and interpretation of the deposit in Bodie as a guide, a combined array of geophysical data in conjunction with traditional field mapping and GIS-based Weights of Evidence (WofE) modeling was utilized to attain better understanding of the Aurora district and both districts in the local and regional framework. The gravity data suggests a NE-trending, positive anomaly, resulting from a density contrast between the presumably uplifted pre-Tertiary basement and Miocene volcanic assemblage in the Bodie Hills. The aeromagnetic data are dominated by the strong signature of the Miocene volcanism (vents, flows, etc.) and suggests that the volcanic activity is concentrated along the northeasterly corridor of basement uplift. Multispectral, spaceborne imagery (Landsat ETM, ASTER) shows the regional structural setting, which is dominated by NNE and NE-trending lineaments and major alteration trends in the Bodie Hills. The high-resolution, narrow-swath, hyperspectral data obtained from high and low altitude AVIRIS targeted on the individual districts, allows identification of hydrothermal alteration assemblages, potential structural mineralization conduits and surface manifestations of mineralization. Individual segments of the regional-to-local geophysical survey are field checked and spatially integrated using WofE. The interpretation and WofE modeling of the geophysical data and detailed geologic field mapping reveal a close relationship between the basement uplift (source for metals), NE-trending structures (conduits), volcanic activity (energy), hydrothermal activity (genesis) and mineralization in Aurora and Bodie. This study confirms that Aurora represents a low-sulfidation system hosted in a strike-slip influenced dilational vein system, which may be genetically associated with the initial phase of Miocene extension and stress accommodation in Western Great Basin during 15--8 Ma.

Basement-involved faults and deep structures in the West Philippine Basin: constrains from gravity field

NASA Astrophysics Data System (ADS)

Wang, Gang; Jiang, Suhua; Li, Sanzhong; Zhang, Huixuan; Lei, Jianping; Gao, Song; Zhao, Feiyu

2017-06-01

To reveal the basement-involved faults and deep structures of the West Philippine Basin (WPB), the gravitational responses caused by these faults are observed and analyzed based on the latest spherical gravity model: WGM2012 Model. By mapping the free-air and Bouguer gravity anomalies, several main faults and some other linear structures are located and observed in the WPB. Then, by conducting a 2D discrete multi-scale wavelet decomposition, the Bouguer anomalies are decomposed into the first- to eighth-order detail and approximation fields (the first- to eighth-order Details and Approximations). The first- to third-order Details reflect detailed and localized geological information of the crust at different depths, and of which the higher-order reflects gravity field of the deeper depth. The first- to fourth-order Approximations represent the regional gravity fields at different depths of the crust, respectively. The fourth-order Approximation represents the regional gravity fluctuation caused by the density inhomogeneity of Moho interface. Therefore, taking the fourth-order Approximation as input, and adopting Parker-Oldenburg interactive inversion, We calculated the depth of Moho interface in the WPB. Results show that the Moho interface depth in the WPB ranges approximately from 8 to 12 km, indicating that there is typical oceanic crust in the basin. In the Urdaneta Plateau and the Benham Rise, the Moho interface depths are about 14 and 16 km, respectively, which provides a piece of evidence to support that the Banham Rise could be a transitional crust caused by a large igneous province. The second-order vertical derivative and the horizontal derivatives in direction 0° and 90° are computed based on the data of the third-order Detail, and most of the basement-involved faults and structures in the WPB, such as the Central Basin Fault Zone, the Gagua Ridge, the Luzon-Okinawa Fault Zone, and the Mindanao Fault Zone are interpreted by the gravity derivatives.

Oil Exploration Mapping

NASA Technical Reports Server (NTRS)

1994-01-01

After concluding an oil exploration agreement with the Republic of Yemen, Chevron International needed detailed geologic and topographic maps of the area. Chevron's remote sensing team used imagery from Landsat and SPOT, combining images into composite views. The project was successfully concluded and resulted in greatly improved base maps and unique topographic maps.

44 CFR 9.7 - Determination of proposed action's location.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Regional Administrator shall consult the FEMA Flood Insurance Rate Map (FIRM) the Flood Boundary Floodway Map (FBFM) and the Flood Insurance Study (FIS). (ii) If a detailed map (FIRM or FBFM) is not available, the Regional Administrator shall consult an FEMA Flood Hazard Boundary Map (FHBM) . If data on flood...

Images of the invisible-prospection methods for the documentation of threatened archaeological sites.

PubMed

Neubauer, W

2001-01-01

To understand the development of prehistoric cultural and economic activities, archaeologists try to obtain as much relevant information as possible. For this purpose, large numbers of similar sites must be identified, usually by non-destructive prospection methods such as aerial photography and geophysical prospection. Aerial archaeology is most effective in locating sites and the use of digital photogrammetry provides maps with high accuracy. For geophysical prospection mainly geomagnetic and geoelectrical methods or the ground-penetrating radar method are used. Near-surface measurements of the respective contrasts within physical properties of the archaeological structures and the surrounding material allows detailed mapping of the inner structures of the sites investigated. Applying specially developed wheeled instrumentation, high-resolution magnetic surveys can be carried out in a standard raster of 0.125 x 0.5 m covering up to 5 ha per day. Measurements of ground resistivity or radar surveys in a raster of 0.5 or 0.5 x 0.05 m, respectively, are used to gain information on archaeological structures and on the main stratigraphic sequence of sites covering up to 0.5 ha per day. Data on intensities of the Earth's magnetic field, apparent resistivities of the ground or amplitudinal information of radar reflections are processed using a digital image processing technique to visualize the otherwise invisible archaeological structures or monuments buried in the ground. Archaeological interpretation, in the sense of detecting, mapping and describing the archaeological structures, is done using GIS technology by combining all relevant prospection data. As most of the Middle European archaeological heritage is under a massive threat of destruction, dramatically accelerated by intensive agriculture or industrial transformation of the landscape, the prospection techniques presented here represent an approach towards an efficient documentation of the disappearing remains of our ancestors.

Flynn Creek Impact Structure: New Insights from Breccias, Melt Features, Shatter Cones, and Remote Sensing

NASA Technical Reports Server (NTRS)

Evenick, J. C.; Lee, P.; Deane, B.

2004-01-01

The Flynn Creek impact structure is located in Tennessee, USA (36 deg.17 min.N, 85 deg.40 min.W). The structure was first mapped as a crypto-volcanic by Wilson and Born in 1936 [1]. Although they did not properly identify the stratigraphy within the crater or the causal mechanism, they did correctly define the horizontal extent of the crater. More detailed surface and subsurface research by Roddy (1979) accurately described the crater as being an impact structure with a diameter of 3.8 km. It formed around 360 Ma, which corresponds to the interval between the deposition of the Nashville Group and the Chattanooga Shale. Although there is limited rock outcrop in the area, there are exposed surface faults, folds, and large outcrops of impact breccia within the crater.

Aggregation of alpha-synuclein by a coarse-grained Monte Carlo simulation

NASA Astrophysics Data System (ADS)

Farmer, Barry; Pandey, Ras

Alpha-synuclein, an intrinsic protein abundant in neurons, is believed to be a major cause of neurodegenerative diseases (e.g. Alzheimer, Parkinson's disease). Abnormal aggregation of ASN leads to Lewy bodies with specific morphologies. We investigate the self-organizing structures in a crowded environment of ASN proteins by a coarse-grained Monte Carlo simulation. ASN is a chain of 140 residues. Structure detail of residues is neglected but its specificity is captured via unique knowledge-based residue-residue interactions. Large-scale simulations are performed to analyze a number local and global physical quantities (e.g. mobility profile, contact map, radius of gyration, structure factor) as a function of temperature and protein concentration. Trend in multi-scale structural variations of the protein in a crowded environment is compared with that of a free protein chain.

Using 3D visualization and seismic attributes to improve structural and stratigraphic resolution of reservoirs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerr, J.; Jones, G.L.

1996-01-01

Recent advances in hardware and software have given the interpreter and engineer new ways to view 3D seismic data and well bore information. Recent papers have also highlighted the use of various statistics and seismic attributes. By combining new 3D rendering technologies with recent trends in seismic analysis, the interpreter can improve the structural and stratigraphic resolution of hydrocarbon reservoirs. This paper gives several examples using 3D visualization to better define both the structural and stratigraphic aspects of several different structural types from around the world. Statistics, 3D visualization techniques and rapid animation are used to show complex faulting andmore » detailed channel systems. These systems would be difficult to map using either 2D or 3D data with conventional interpretation techniques.« less

Using 3D visualization and seismic attributes to improve structural and stratigraphic resolution of reservoirs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerr, J.; Jones, G.L.

1996-12-31

Recent advances in hardware and software have given the interpreter and engineer new ways to view 3D seismic data and well bore information. Recent papers have also highlighted the use of various statistics and seismic attributes. By combining new 3D rendering technologies with recent trends in seismic analysis, the interpreter can improve the structural and stratigraphic resolution of hydrocarbon reservoirs. This paper gives several examples using 3D visualization to better define both the structural and stratigraphic aspects of several different structural types from around the world. Statistics, 3D visualization techniques and rapid animation are used to show complex faulting andmore » detailed channel systems. These systems would be difficult to map using either 2D or 3D data with conventional interpretation techniques.« less

Optimal pollution mitigation in Monterey Bay based on coastal radar data and nonlinear dynamics.

PubMed

Coulliette, Chad; Lekien, Francois; Paduan, Jeffrey D; Haller, George; Marsden, Jerrold E

2007-09-15

High-frequency (HF) radar technology produces detailed velocity maps near the surface of estuaries and bays. The use of velocity data in environmental prediction, nonetheless, remains unexplored. In this paper, we uncover a striking flow structure in coastal radar observations of Monterey Bay, along the California coastline. This complex structure governs the spread of organic contaminants, such as agricultural runoff which is a typical source of pollution in the bay. We show that a HF radar-based pollution release scheme using this flow structure reduces the impact of pollution on the coastal environment in the bay. We predict the motion of the Lagrangian flow structures from finite-time Lyapunov exponents of the coastal HF velocity data. From this prediction, we obtain optimal release times, at which pollution leaves the bay most efficiently.

ODISEES: A New Paradigm in Data Access

NASA Astrophysics Data System (ADS)

Huffer, E.; Little, M. M.; Kusterer, J.

2013-12-01

As part of its ongoing efforts to improve access to data, the Atmospheric Science Data Center has developed a high-precision Earth Science domain ontology (the 'ES Ontology') implemented in a graph database ('the Semantic Metadata Repository') that is used to store detailed, semantically-enhanced, parameter-level metadata for ASDC data products. The ES Ontology provides the semantic infrastructure needed to drive the ASDC's Ontology-Driven Interactive Search Environment for Earth Science ('ODISEES'), a data discovery and access tool, and will support additional data services such as analytics and visualization. The ES ontology is designed on the premise that naming conventions alone are not adequate to provide the information needed by prospective data consumers to assess the suitability of a given dataset for their research requirements; nor are current metadata conventions adequate to support seamless machine-to-machine interactions between file servers and end-user applications. Data consumers need information not only about what two data elements have in common, but also about how they are different. End-user applications need consistent, detailed metadata to support real-time data interoperability. The ES ontology is a highly precise, bottom-up, queriable model of the Earth Science domain that focuses on critical details about the measurable phenomena, instrument techniques, data processing methods, and data file structures. Earth Science parameters are described in detail in the ES Ontology and mapped to the corresponding variables that occur in ASDC datasets. Variables are in turn mapped to well-annotated representations of the datasets that they occur in, the instrument(s) used to create them, the instrument platforms, the processing methods, etc., creating a linked-data structure that allows both human and machine users to access a wealth of information critical to understanding and manipulating the data. The mappings are recorded in the Semantic Metadata Repository as RDF-triples. An off-the-shelf Ontology Development Environment and a custom Metadata Conversion Tool comprise a human-machine/machine-machine hybrid tool that partially automates the creation of metadata as RDF-triples by interfacing with existing metadata repositories and providing a user interface that solicits input from a human user, when needed. RDF-triples are pushed to the Ontology Development Environment, where a reasoning engine executes a series of inference rules whose antecedent conditions can be satisfied by the initial set of RDF-triples, thereby generating the additional detailed metadata that is missing in existing repositories. A SPARQL Endpoint, a web-based query service and a Graphical User Interface allow prospective data consumers - even those with no familiarity with NASA data products - to search the metadata repository to find and order data products that meet their exact specifications. A web-based API will provide an interface for machine-to-machine transactions.

[Modeling developmental aspects of sensorimotor control of speech production].

PubMed

Kröger, B J; Birkholz, P; Neuschaefer-Rube, C

2007-05-01

Detailed knowledge of the neurophysiology of speech acquisition is important for understanding the developmental aspects of speech perception and production and for understanding developmental disorders of speech perception and production. A computer implemented neural model of sensorimotor control of speech production was developed. The model is capable of demonstrating the neural functions of different cortical areas during speech production in detail. (i) Two sensory and two motor maps or neural representations and the appertaining neural mappings or projections establish the sensorimotor feedback control system. These maps and mappings are already formed and trained during the prelinguistic phase of speech acquisition. (ii) The feedforward sensorimotor control system comprises the lexical map (representations of sounds, syllables, and words of the first language) and the mappings from lexical to sensory and to motor maps. The training of the appertaining mappings form the linguistic phase of speech acquisition. (iii) Three prelinguistic learning phases--i. e. silent mouthing, quasi stationary vocalic articulation, and realisation of articulatory protogestures--can be defined on the basis of our simulation studies using the computational neural model. These learning phases can be associated with temporal phases of prelinguistic speech acquisition obtained from natural data. The neural model illuminates the detailed function of specific cortical areas during speech production. In particular it can be shown that developmental disorders of speech production may result from a delayed or incorrect process within one of the prelinguistic learning phases defined by the neural model.

Visibility graphs and symbolic dynamics

NASA Astrophysics Data System (ADS)

Lacasa, Lucas; Just, Wolfram

2018-07-01

Visibility algorithms are a family of geometric and ordering criteria by which a real-valued time series of N data is mapped into a graph of N nodes. This graph has been shown to often inherit in its topology nontrivial properties of the series structure, and can thus be seen as a combinatorial representation of a dynamical system. Here we explore in some detail the relation between visibility graphs and symbolic dynamics. To do that, we consider the degree sequence of horizontal visibility graphs generated by the one-parameter logistic map, for a range of values of the parameter for which the map shows chaotic behaviour. Numerically, we observe that in the chaotic region the block entropies of these sequences systematically converge to the Lyapunov exponent of the time series. Hence, Pesin's identity suggests that these block entropies are converging to the Kolmogorov-Sinai entropy of the physical measure, which ultimately suggests that the algorithm is implicitly and adaptively constructing phase space partitions which might have the generating property. To give analytical insight, we explore the relation k(x) , x ∈ [ 0 , 1 ] that, for a given datum with value x, assigns in graph space a node with degree k. In the case of the out-degree sequence, such relation is indeed a piece-wise constant function. By making use of explicit methods and tools from symbolic dynamics we are able to analytically show that the algorithm indeed performs an effective partition of the phase space and that such partition is naturally expressed as a countable union of subintervals, where the endpoints of each subinterval are related to the fixed point structure of the iterates of the map and the subinterval enumeration is associated with particular ordering structures that we called motifs.

Integration of Full Tensor Gravity and Z-Axis Tipper Electromagnetic Passive Low Frequency EM Instruments for Simultaneous Data Acquisition - Final Technical Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wieberg, Scott

Ground gravity is a common and useful tool for geothermal exploration. Gravity surveys map density changes in the subsurface that may be caused by tectonic deformation such as faulting, fracturing, plutonism, volcanism, hydrothermal alteration, etc. Full Tensor Gravity Gradient (FTG) data has been used for over a decade in both petroleum and mining exploration to map changes in density associated with geologic structure. Measuring the gravity gradient, rather than the gravity field, provides significantly higher resolution data. Modeling studies have shown FTG data to be a viable tool for geothermal exploration, but no FTG data had been acquired for geothermalmore » applications to date. Electromagnetic methods have been used for geothermal exploration for some time. The Z-Axis Tipper Electromagnetic (ZTEM) was a newer technology that had found success in mapping deep conductivity changes for mining applications. ZTEM had also been used in limited tests for geothermal exploration. This newer technology provided the ability to cost effectively map large areas whilst detailing the electrical properties of the geological structures at depths. The ZTEM is passive and it uses naturally occurring audio frequency magnetic (AFMAG) signals as the electromagnetic triggering source. These geophysical methods were to be tested over a known geothermal site to determine whether or not the data provided the information required for accurately interpreting the subsurface geologic structure associated with a geothermal deposit. After successful acquisition and analysis of the known source area, an additional survey of a “greenfield” area was to be completed. The final step was to develop a combined interpretation model and determine if the combination produced a higher confident geophysical model compared to models developed using each of the technologies individually.« less

Very high spatial resolution two-dimensional solar spectroscopy with video CCDs

NASA Technical Reports Server (NTRS)

Johanneson, A.; Bida, T.; Lites, B.; Scharmer, G. B.

1992-01-01

We have developed techniques for recording and reducing spectra of solar fine structure with complete coverage of two-dimensional areas at very high spatial resolution and with a minimum of seeing-induced distortions. These new techniques permit one, for the first time, to place the quantitative measures of atmospheric structure that are afforded only by detailed spectral measurements into their proper context. The techniques comprise the simultaneous acquisition of digital spectra and slit-jaw images at video rates as the solar scene sweeps rapidly by the spectrograph slit. During data processing the slit-jaw images are used to monitor rigid and differential image motion during the scan, allowing measured spectrum properties to be remapped spatially. The resulting quality of maps of measured properties from the spectra is close to that of the best filtergrams. We present the techniques and show maps from scans over pores and small sunspots obtained at a resolution approaching 1/3 arcsec in the spectral region of the magnetically sensitive Fe I lines at 630.15 and 630.25 nm. The maps shown are of continuum intensity and calibrated Doppler velocity. More extensive spectral inversion of these spectra to yield the strength of the magnetic field and other parameters is now underway, and the results of that analysis will be presented in a following paper.

Thermal Evolution of a Failed Flux Rope Eruption Revealed by Temperature Maps

NASA Astrophysics Data System (ADS)

Song, H.; Zhang, J.; CHEN, Y.

2013-12-01

Flux rope is generally considered to be the fundamental magnetic configuration of a coronal mass ejection (CME). Recent observations suggest that hot channel or blob structures during the eruptions be the direct observational manifestation of flux ropes. In this study, we report our analysis of thermal evolution of a failed solar eruption with an apparent flux rope embedded. The thermal structure of the eruption is revealed through differential emission measure (DEM) analysis technique, which shows detailed temperature maps in both high spatial resolution and high temperature resolution based on SDO/AIA observations. Our results show that the flux rope exists in the corona before the eruption, and its temperature can quickly rise to over 10 MK within one minute of the eruption. The correlation study between the flux rope temperature and the soft x-ray flux suggests that the flux rope should be heated through the direct thermal energy release of magnetic reconnection. Further, we study the kinematic evolution process of the flux rope, in an effort to find the physical mechanism that prevents the magnetic rope eruption to become a full coronal mass ejection. This kind of study using temperature maps might reveal where and when magnetic reconnection takes place during solar eruptions.

A Comparison of PETSC Library and HPF Implementations of an Archetypal PDE Computation

NASA Technical Reports Server (NTRS)

Hayder, M. Ehtesham; Keyes, David E.; Mehrotra, Piyush

1997-01-01

Two paradigms for distributed-memory parallel computation that free the application programmer from the details of message passing are compared for an archetypal structured scientific computation a nonlinear, structured-grid partial differential equation boundary value problem using the same algorithm on the same hardware. Both paradigms, parallel libraries represented by Argonne's PETSC, and parallel languages represented by the Portland Group's HPF, are found to be easy to use for this problem class, and both are reasonably effective in exploiting concurrency after a short learning curve. The level of involvement required by the application programmer under either paradigm includes specification of the data partitioning (corresponding to a geometrically simple decomposition of the domain of the PDE). Programming in SPAM style for the PETSC library requires writing the routines that discretize the PDE and its Jacobian, managing subdomain-to-processor mappings (affine global- to-local index mappings), and interfacing to library solver routines. Programming for HPF requires a complete sequential implementation of the same algorithm, introducing concurrency through subdomain blocking (an effort similar to the index mapping), and modest experimentation with rewriting loops to elucidate to the compiler the latent concurrency. Correctness and scalability are cross-validated on up to 32 nodes of an IBM SP2.

Synthesis of regional crust and upper-mantle structure from seismic and gravity data

NASA Technical Reports Server (NTRS)

Alexander, S. S.; Lavin, P. M.

1979-01-01

Available seismic and ground based gravity data are combined to infer the three dimensional crust and upper mantle structure in selected regions. This synthesis and interpretation proceeds from large-scale average models suitable for early comparison with high-altitude satellite potential field data to more detailed delineation of structural boundaries and other variations that may be significant in natural resource assessment. Seismic and ground based gravity data are the primary focal point, but other relevant information (e.g. magnetic field, heat flow, Landsat imagery, geodetic leveling, and natural resources maps) is used to constrain the structure inferred and to assist in defining structural domains and boundaries. The seismic data consists of regional refraction lines, limited reflection coverage, surface wave dispersion, teleseismic P and S wave delay times, anelastic absorption, and regional seismicity patterns. The gravity data base consists of available point gravity determinations for the areas considered.

Method to deterministically study photonic nanostructures in different experimental instruments.

PubMed

Husken, B H; Woldering, L A; Blum, C; Vos, W L

2009-01-01

We describe an experimental method to recover a single, deterministically fabricated nanostructure in various experimental instruments without the use of artificially fabricated markers, with the aim to study photonic structures. Therefore, a detailed map of the spatial surroundings of the nanostructure is made during the fabrication of the structure. These maps are made using a series of micrographs with successively decreasing magnifications. The graphs reveal intrinsic and characteristic geometric features that can subsequently be used in different setups to act as markers. As an illustration, we probe surface cavities with radii of 65 nm on a silica opal photonic crystal with various setups: a focused ion beam workstation; a scanning electron microscope (SEM); a wide field optical microscope and a confocal microscope. We use cross-correlation techniques to recover a small area imaged with the SEM in a large area photographed with the optical microscope, which provides a possible avenue to automatic searching. We show how both structural and optical reflectivity data can be obtained from one and the same nanostructure. Since our approach does not use artificial grids or markers, it is of particular interest for samples whose structure is not known a priori, like samples created solely by self-assembly. In addition, our method is not restricted to conducting samples.

Knowledge and Theme Discovery across Very Large Biological Data Sets Using Distributed Queries: A Prototype Combining Unstructured and Structured Data

PubMed Central

Repetski, Stephen; Venkataraman, Girish; Che, Anney; Luke, Brian T.; Girard, F. Pascal; Stephens, Robert M.

2013-01-01

As the discipline of biomedical science continues to apply new technologies capable of producing unprecedented volumes of noisy and complex biological data, it has become evident that available methods for deriving meaningful information from such data are simply not keeping pace. In order to achieve useful results, researchers require methods that consolidate, store and query combinations of structured and unstructured data sets efficiently and effectively. As we move towards personalized medicine, the need to combine unstructured data, such as medical literature, with large amounts of highly structured and high-throughput data such as human variation or expression data from very large cohorts, is especially urgent. For our study, we investigated a likely biomedical query using the Hadoop framework. We ran queries using native MapReduce tools we developed as well as other open source and proprietary tools. Our results suggest that the available technologies within the Big Data domain can reduce the time and effort needed to utilize and apply distributed queries over large datasets in practical clinical applications in the life sciences domain. The methodologies and technologies discussed in this paper set the stage for a more detailed evaluation that investigates how various data structures and data models are best mapped to the proper computational framework. PMID:24312478

Capturing relativistic wakefield structures in plasmas using ultrashort high-energy electrons as a probe

DOE PAGES

Zhang, C. J.; Hua, J. F.; Xu, X. L.; ...

2016-07-11

A new method capable of capturing coherent electric field structures propagating at nearly the speed of light in plasma with a time resolution as small as a few femtoseconds is proposed. This method uses a few femtoseconds long relativistic electron bunch to probe the wake produced in a plasma by an intense laser pulse or an ultra-short relativistic charged particle beam. As the probe bunch traverses the wake, its momentum is modulated by the electric field of the wake, leading to a density variation of the probe after free-space propagation. This variation of probe density produces a snapshot of themore » wake that can directly give many useful information of the wake structure and its evolution. Furthermore, this snapshot allows detailed mapping of the longitudinal and transverse components of the wakefield. We develop a theoretical model for field reconstruction and verify it using 3-dimensional particle-in-cell (PIC) simulations. This model can accurately reconstruct the wakefield structure in the linear regime, and it can also qualitatively map the major features of nonlinear wakes. As a result, the capturing of the injection in a nonlinear wake is demonstrated through 3D PIC simulations as an example of the application of this new method.« less

Deriving high-resolution protein backbone structure propensities from all crystal data using the information maximization device.

PubMed

Solis, Armando D

2014-01-01

The most informative probability distribution functions (PDFs) describing the Ramachandran phi-psi dihedral angle pair, a fundamental descriptor of backbone conformation of protein molecules, are derived from high-resolution X-ray crystal structures using an information-theoretic approach. The Information Maximization Device (IMD) is established, based on fundamental information-theoretic concepts, and then applied specifically to derive highly resolved phi-psi maps for all 20 single amino acid and all 8000 triplet sequences at an optimal resolution determined by the volume of current data. The paper shows that utilizing the latent information contained in all viable high-resolution crystal structures found in the Protein Data Bank (PDB), totaling more than 77,000 chains, permits the derivation of a large number of optimized sequence-dependent PDFs. This work demonstrates the effectiveness of the IMD and the superiority of the resulting PDFs by extensive fold recognition experiments and rigorous comparisons with previously published triplet PDFs. Because it automatically optimizes PDFs, IMD results in improved performance of knowledge-based potentials, which rely on such PDFs. Furthermore, it provides an easy computational recipe for empirically deriving other kinds of sequence-dependent structural PDFs with greater detail and precision. The high-resolution phi-psi maps derived in this work are available for download.

Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data.

PubMed

Mudunuri, Uma S; Khouja, Mohamad; Repetski, Stephen; Venkataraman, Girish; Che, Anney; Luke, Brian T; Girard, F Pascal; Stephens, Robert M

2013-01-01

As the discipline of biomedical science continues to apply new technologies capable of producing unprecedented volumes of noisy and complex biological data, it has become evident that available methods for deriving meaningful information from such data are simply not keeping pace. In order to achieve useful results, researchers require methods that consolidate, store and query combinations of structured and unstructured data sets efficiently and effectively. As we move towards personalized medicine, the need to combine unstructured data, such as medical literature, with large amounts of highly structured and high-throughput data such as human variation or expression data from very large cohorts, is especially urgent. For our study, we investigated a likely biomedical query using the Hadoop framework. We ran queries using native MapReduce tools we developed as well as other open source and proprietary tools. Our results suggest that the available technologies within the Big Data domain can reduce the time and effort needed to utilize and apply distributed queries over large datasets in practical clinical applications in the life sciences domain. The methodologies and technologies discussed in this paper set the stage for a more detailed evaluation that investigates how various data structures and data models are best mapped to the proper computational framework.

Exploitation utilizing 3D seismic in the Red Oak gas field of the Arkoma Basin, Oklahoma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rutty, P.; Schlaefer, J.; Antonio, V.

1995-09-01

Red Oak field,located in the Arkoma basin of Eastern Oklahoma, produces 200 Mmcfd of gas under pressure depletion drive with 2.6 TCF of gas recoverable. Structurally, the field occupied a position along the northern flank of the southward collapsing shear-margin formed during the Ouachita Orogeny. The basin flank is characterized by rapid subsidence and deposition of over 20,000 feet (6000 m) of shallow to deep marine shale and stacked sandstone in Atokan time (mid-late Carboniferous). This sequence culminates with a shoaling upward cycle and is structurally deformed by earliest Desmoinesian thrusting (280-265 Mya). Interpretation from an 18 mi{sup {center_dot}2} (47km{supmore » 2}) 3-D seismic survey was integrated with available with available well control and litho-facies mapping defining detailed structural irregularities and providing new drillsites while reducing economic risk. Resolution of data from the 3D seismic survey varied greatly. The one failed aspect of the original 3D survey design was to precisely map Red Oak sandstone. However, the survey was robust enough to provide excellent shallow and deep data, leading to identification of additional reservoir targets and multiple drilling proposals.« less

Micron-Resolution X-ray Structural Microscopy Studies of 3-D Grain Growth in Polycrystalline Aluminum

NASA Astrophysics Data System (ADS)

Budai, J. D.; Yang, W.; Tischler, J. Z.; Liu, W.; Larson, B. C.; Ice, G. E.

2004-03-01

We describe a new polychromatic x-ray microdiffraction technique providing 3D measurements of lattice structure, orientation and strain with submicron point-to-point spatial resolution. The instrument is located on the UNI-CAT II undulator beamline at the Advanced Photon Source and uses Kirkpatrick-Baez focusing mirrors, differential aperture CCD measurements and automated analysis of spatially-resolved Laue patterns. 3D x-ray structural microscopy is applicable to a wide range of materials investigations and here we describe 3D thermal grain growth studies in polycrystalline aluminum ( ˜1% Fe,Si) from Alcoa. The morphology and orientations of the grains in a hot-rolled aluminum sample were initially mapped. The sample was then annealed to induce grain growth, cooled to room temperature, and the same volume region was re-mapped to determine the thermal migration of all grain boundaries. Significant grain growth was observed after annealing above ˜350^oC where both low-angle and high-angle boundaries were mobile. These measurements will provide the detailed 3D experimental input needed for testing theories and computer models of 3D grain growth in bulk materials.

Electronic structure and surface properties of MgB2(0001) upon oxygen adsorption

NASA Astrophysics Data System (ADS)

Kim, Chang-Eun; Ray, Keith G.; Bahr, David F.; Lordi, Vincenzo

2018-05-01

We use density-functional theory to investigate the bulk and surface properties of MgB2. The unique bonding structure of MgB2 is investigated by Bader's atoms-in-molecules, charge density difference, and occupancy projected band structure analyses. Oxygen adsorption on the charge-depleted surfaces of MgB2 is studied by a surface potential energy mapping method, reporting a complete map including low-symmetry binding sites. The B-terminated MgB2(0001) demonstrates reconstruction of the graphenelike B layer, and the reconstructed geometry exposes a threefold site of the subsurface Mg, making it accessible from the surface. Detailed reconstruction mechanisms are studied by simulated annealing method based on ab initio molecular dynamics and nudged elastic band calculations. The surface clustering of B atoms significantly modifies the B 2 p states to occupy low energy valence states. The present paper emphasizes that a thorough understanding of the surface phase may explain an apparent inconsistency in the experimental surface characterization of MgB2. Furthermore, these results suggest that the surface passivation can be an important technical challenge when it comes to development of a superconducting device using MgB2.

Structure of the meningococcal vaccine antigen NadA and epitope mapping of a bactericidal antibody.

PubMed

Malito, Enrico; Biancucci, Marco; Faleri, Agnese; Ferlenghi, Ilaria; Scarselli, Maria; Maruggi, Giulietta; Lo Surdo, Paola; Veggi, Daniele; Liguori, Alessia; Santini, Laura; Bertoldi, Isabella; Petracca, Roberto; Marchi, Sara; Romagnoli, Giacomo; Cartocci, Elena; Vercellino, Irene; Savino, Silvana; Spraggon, Glen; Norais, Nathalie; Pizza, Mariagrazia; Rappuoli, Rino; Masignani, Vega; Bottomley, Matthew James

2014-12-02

Serogroup B Neisseria meningitidis (MenB) is a major cause of severe sepsis and invasive meningococcal disease, which is associated with 5-15% mortality and devastating long-term sequelae. Neisserial adhesin A (NadA), a trimeric autotransporter adhesin (TAA) that acts in adhesion to and invasion of host epithelial cells, is one of the three antigens discovered by genome mining that are part of the MenB vaccine that recently was approved by the European Medicines Agency. Here we present the crystal structure of NadA variant 5 at 2 Å resolution and transmission electron microscopy data for NadA variant 3 that is present in the vaccine. The two variants show similar overall topology with a novel TAA fold predominantly composed of trimeric coiled-coils with three protruding wing-like structures that create an unusual N-terminal head domain. Detailed mapping of the binding site of a bactericidal antibody by hydrogen/deuterium exchange MS shows that a protective conformational epitope is located in the head of NadA. These results provide information that is important for elucidating the biological function and vaccine efficacy of NadA.

Low-dose dynamic myocardial perfusion CT image reconstruction using pre-contrast normal-dose CT scan induced structure tensor total variation regularization

NASA Astrophysics Data System (ADS)

Gong, Changfei; Han, Ce; Gan, Guanghui; Deng, Zhenxiang; Zhou, Yongqiang; Yi, Jinling; Zheng, Xiaomin; Xie, Congying; Jin, Xiance

2017-04-01

Dynamic myocardial perfusion CT (DMP-CT) imaging provides quantitative functional information for diagnosis and risk stratification of coronary artery disease by calculating myocardial perfusion hemodynamic parameter (MPHP) maps. However, the level of radiation delivered by dynamic sequential scan protocol can be potentially high. The purpose of this work is to develop a pre-contrast normal-dose scan induced structure tensor total variation regularization based on the penalized weighted least-squares (PWLS) criteria to improve the image quality of DMP-CT with a low-mAs CT acquisition. For simplicity, the present approach was termed as ‘PWLS-ndiSTV’. Specifically, the ndiSTV regularization takes into account the spatial-temporal structure information of DMP-CT data and further exploits the higher order derivatives of the objective images to enhance denoising performance. Subsequently, an effective optimization algorithm based on the split-Bregman approach was adopted to minimize the associative objective function. Evaluations with modified dynamic XCAT phantom and preclinical porcine datasets have demonstrated that the proposed PWLS-ndiSTV approach can achieve promising gains over other existing approaches in terms of noise-induced artifacts mitigation, edge details preservation, and accurate MPHP maps calculation.

Simulation Studies of Forest Structure using 3D Lidar and Radar Models

NASA Technical Reports Server (NTRS)

Sun, Guoqing; Ranson, K. Jon; Koetz, Benjamin; Liu, Dawei

2007-01-01

The use of lidars and radars to measure forest structure attributes such as height and biomass are being considered for future Earth Observation missions. Large footprint lidar makes a direct measurement of the heights of scatterers in the illuminated footprint and can yield information about the vertical profile of the canopy. Synthetic Aperture Radar (SAR) is known to sense the canopy volume, especially at longer wavelengths and is useful for estimating biomass. Interferometric SAR (InSAR) has been shown to yield forest canopy height information. For example, the height of scattering phase retrieved from InSAR data is considered to be correlated with the three height and the spatial structure of the forest stand. There is much interest in exploiting these technologies separately and together to get important information for carbon cycle and ecosystem science. More detailed information of the electromagnetic radiation interactions within forest canopies is needed. And backscattering models can be of much utility here. As part of a NASA funded project to explore data fusion, a three-dimensional (3D) coherent radar backscattering model and a 3D lidar backscatter models were used to investigate the use of large footprint lidar, SAR and InSAR for characterizing realistic forest scenes. For this paper, we use stem maps and other forest measurements to develop a realistic spatial structure of a spruce-hemlock forest canopy found in Maine, USA. The radar and lidar models used measurements of the 3D forest scene as input and simulated the coherent radar backscattering signature and 1064nm energy backscatter, respectively. The relationships of backscatter derived forest structure were compared with field measurements. In addition, we also had detailed airborne lidar (Laser Imaging Vegetation Sensor, LVIS) data available over the stem map sites that was used to study the accuracies of tree height derived from modeled SAR backscatter and the scattering phase center retrieved from the simulated InSAR data will be compared with the height indices, or other structure parameters derived from the lidar data. These results will address the possible synergies between lidar and radar in data in terms of forest structural information.

Facilitating the exploitation of ERTS-1 imagery using snow enhancement techniques. [geological fault maps of Massachusetts and Connecticut

NASA Technical Reports Server (NTRS)

Wobber, F. J. (Principal Investigator); Martin, K. R.; Amato, R. V.; Leshendok, T.

1973-01-01

The author has identified the following significant results. The applications of ERTS-1 imagery for geological fracture mapping regardless of season has been repeatedly confirmed. The enhancement provided by a differential cover of snow increases the number and length of fracture-lineaments which can be detected with ERTS-1 data and accelerates the fracture mapping process for a variety of practical applications. The geological mapping benefits of the program will be realized in geographic areas where data are most needed - complex glaciated terrain and areas of deep residual soils. ERTS-1 derived fracture-lineament maps which provide detail well in excess of existing geological maps are not available in the Massachusetts-Connecticut area. The large quantity of new data provided by ERTS-1 may accelerate and improve field mapping now in progress in the area. Numerous other user groups have requested data on the techniques. This represents a major change in operating philosophy for groups who to data judged that snow obscured geological detail.

Global Environmental Data for Mapping Infectious Disease Distribution

PubMed Central

Hay, S.I.; Tatem, A.J.; Graham, A.J.; Goetz, S.J.; Rogers, D.J.

2011-01-01

This contribution documents the satellite data archives, data processing methods and temporal Fourier analysis (TFA) techniques used to create the remotely sensed datasets on the DVD distributed with this volume. The aim is to provide a detailed reference guide to the genesis of the data, rather than a standard review. These remotely sensed data cover the entire globe at either 1 × 1 or 8 × 8 km spatial resolution. We briefly evaluate the relationships between the 1 × 1 and 8 × 8 km global TFA products to explore their inter-compatibility. The 8 × 8 km TFA surfaces are used in the mapping procedures detailed in the subsequent disease mapping reviews, since the 1 × 1 km products have been validated less widely. Details are also provided on additional, current and planned sensors that should be able to provide continuity with these environmental variable surfaces, as well as other sources of global data that may be used for mapping infectious disease. PMID:16647967

Quantitatively Mapping Cellular Viscosity with Detailed Organelle Information via a Designed PET Fluorescent Probe

PubMed Central

Liu, Tianyu; Liu, Xiaogang; Spring, David R.; Qian, Xuhong; Cui, Jingnan; Xu, Zhaochao

2014-01-01

Viscosity is a fundamental physical parameter that influences diffusion in biological processes. The distribution of intracellular viscosity is highly heterogeneous, and it is challenging to obtain a full map of cellular viscosity with detailed organelle information. In this work, we report 1 as the first fluorescent viscosity probe which is able to quantitatively map cellular viscosity with detailed organelle information based on the PET mechanism. This probe exhibited a significant ratiometric fluorescence intensity enhancement as solvent viscosity increases. The emission intensity increase was attributed to combined effects of the inhibition of PET due to restricted conformational access (favorable for FRET, but not for PET), and the decreased PET efficiency caused by viscosity-dependent twisted intramolecular charge transfer (TICT). A full map of subcellular viscosity was successfully constructed via fluorescent ratiometric detection and fluorescence lifetime imaging; it was found that lysosomal regions in a cell possess the highest viscosity, followed by mitochondrial regions. PMID:24957323

Studying variability in human brain aging in a population-based German cohort-rationale and design of 1000BRAINS.

PubMed

Caspers, Svenja; Moebus, Susanne; Lux, Silke; Pundt, Noreen; Schütz, Holger; Mühleisen, Thomas W; Gras, Vincent; Eickhoff, Simon B; Romanzetti, Sandro; Stöcker, Tony; Stirnberg, Rüdiger; Kirlangic, Mehmet E; Minnerop, Martina; Pieperhoff, Peter; Mödder, Ulrich; Das, Samir; Evans, Alan C; Jöckel, Karl-Heinz; Erbel, Raimund; Cichon, Sven; Nöthen, Markus M; Sturma, Dieter; Bauer, Andreas; Jon Shah, N; Zilles, Karl; Amunts, Katrin

2014-01-01

The ongoing 1000 brains study (1000BRAINS) is an epidemiological and neuroscientific investigation of structural and functional variability in the human brain during aging. The two recruitment sources are the 10-year follow-up cohort of the German Heinz Nixdorf Recall (HNR) Study, and the HNR MultiGeneration Study cohort, which comprises spouses and offspring of HNR subjects. The HNR is a longitudinal epidemiological investigation of cardiovascular risk factors, with a comprehensive collection of clinical, laboratory, socioeconomic, and environmental data from population-based subjects aged 45-75 years on inclusion. HNR subjects underwent detailed assessments in 2000, 2006, and 2011, and completed annual postal questionnaires on health status. 1000BRAINS accesses these HNR data and applies a separate protocol comprising: neuropsychological tests of attention, memory, executive functions and language; examination of motor skills; ratings of personality, life quality, mood and daily activities; analysis of laboratory and genetic data; and state-of-the-art magnetic resonance imaging (MRI, 3 Tesla) of the brain. The latter includes (i) 3D-T1- and 3D-T2-weighted scans for structural analyses and myelin mapping; (ii) three diffusion imaging sequences optimized for diffusion tensor imaging, high-angular resolution diffusion imaging for detailed fiber tracking and for diffusion kurtosis imaging; (iii) resting-state and task-based functional MRI; and (iv) fluid-attenuated inversion recovery and MR angiography for the detection of vascular lesions and the mapping of white matter lesions. The unique design of 1000BRAINS allows: (i) comprehensive investigation of various influences including genetics, environment and health status on variability in brain structure and function during aging; and (ii) identification of the impact of selected influencing factors on specific cognitive subsystems and their anatomical correlates.

Morphological analysis of hummocks in debris avalanche deposits using UAS-derived high-definition topographic data

NASA Astrophysics Data System (ADS)

Hayakawa, Yuichi S.; Obanawa, Hiroyuki; Yoshida, Hidetsugu; Naruhashi, Ryutaro; Okumura, Koji; Zaiki, Masumi

2016-04-01

Debris avalanche caused by sector collapse of a volcanic mountain often forms depositional landforms with characteristic surface morphology comprising hummocks. Geomorphological and sedimentological analyses of debris avalanche deposits (DAD) at the northeastern face of Mt. Erciyes in central Turkey have been performed to investigate the mechanisms and processes of the debris avalanche. The morphometry of hummocks provides an opportunity to examine the volumetric and kinematic characteristics of the DAD. Although the exact age has been unknown, the sector collapse of this DAD was supposed to have occurred in the late Pleistocene (sometime during 90-20 ka), and subsequent sediment supply from the DAD could have affected ancient human activities in the downstream basin areas. In order to measure detailed surface morphology and depositional structures of the DAD, we apply structure-from-motion multi-view stereo (SfM-MVS) photogrammetry using unmanned aerial system (UAS) and a handheld camera. The UAS, including small unmanned aerial vehicle (sUAV) and a digital camera, provides low-altitude aerial photographs to capture surface morphology for an area of several square kilometers. A high-resolution topographic data, as well as an orthorectified image, of the hummocks were then obtained from the digital elevation model (DEM), and the geometric features of the hummocks were examined. A handheld camera is also used to obtain photographs of outcrop face of the DAD along a road to support the seimentological investigation. The three-dimensional topographic models of the outcrop, with a panoramic orthorectified image projected on a vertical plane, were obtained. This data enables to effectively describe sedimentological structure of the hummock in DAD. The detailed map of the DAD is also further examined with a regional geomorphological map to be compared with other geomorphological features including fluvial valleys, terraces, lakes and active faults.

12. Photocopy of map. Original in library of Lehmann Building, ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

12. Photocopy of map. Original in library of Lehmann Building, Missouri Botanical Garden. DETAIL OF MAP DRAWN AND ENGRAVED BY FRANCIS TUNICA IN 1865 - Missouri Botanical Garden, 2345 Tower Grove Avenue, Saint Louis, Independent City, MO

Surface Rupture Map of the 2002 M7.9 Denali Fault Earthquake, Alaska: Digital Data

USGS Publications Warehouse

Haeussler, Peter J.

2009-01-01

The November 3, 2002, Mw7.9 Denali Fault earthquake produced about 340 km of surface rupture along the Susitna Glacier Thrust Fault and the right-lateral, strike-slip Denali and Totschunda Faults. Digital photogrammetric methods were primarily used to create a 1:500-scale, three-dimensional surface rupture map, and 1:6,000-scale aerial photographs were used for three-dimensional digitization in ESRI's ArcMap GIS software, using Leica's StereoAnalyst plug in. Points were digitized 4.3 m apart, on average, for the entire surface rupture. Earthquake-induced landslides, sackungen, and unruptured Holocene fault scarps on the eastern Denali Fault were also digitized where they lay within the limits of air photo coverage. This digital three-dimensional fault-trace map is superior to traditional maps in terms of relative and absolute accuracy, completeness, and detail and is used as a basis for three-dimensional visualization. Field work complements the air photo observations in locations of dense vegetation, on bedrock, or in areas where the surface trace is weakly developed. Seventeen km of the fault trace, which broke through glacier ice, were not digitized in detail due to time constraints, and air photos missed another 10 km of fault rupture through the upper Black Rapids Glacier, so that was not mapped in detail either.

The Depositional and Erosional History of Northwestern Aeolis Mons, Gale Crater, Mars: Insights from Detailed 1:2K Geologic Mapping

NASA Astrophysics Data System (ADS)

Edgar, L. A.; Calef, F. J., III; Thomson, B. J.

2017-12-01

The Mars Science Laboratory (MSL) Curiosity rover is currently exploring the stratigraphy exposed in Aeolis Mons, the central mound of Gale crater. Gale crater has been the target of numerous remote sensing studies, aimed at understanding the origin and evolution of the mound, informally known as Mt. Sharp. A number of efforts have produced geologic maps of the mound and the MSL traverse path, in order to investigate the stratigraphic relationships between different sedimentary units. However, a scale gap exists between local mapping and stratigraphic analyses of the area explored by Curiosity and regional mapping of Aeolis Mons. As Curiosity explores the northwest flank of Aeolis Mons, there is a critical need for investigations to bridge this gap to enable rover-scale observations to be tied to orbital interpretations. This study is focused on detailed geologic mapping and stratigraphic correlations for the northwest flank of Aeolis Mons, including an area that the Curiosity rover will likely explore. The study region covers a 5.8 x 10 km area from approximately 137.27 to 137.44 °E and -4.70 to -4.82 °N. A 25 cm/pixel mosaic produced from images acquired by the High Resolution Imaging Science Experiment (HiRISE) camera provides a basemap for all mapping, and topographic information is provided by a HiRISE 1 m Digital Terrain Model. Preliminary digital geologic mapping was carried out at a scale of 1:10,000 to provide a framework for detailed geologic mapping efforts. Higher-resolution geologic mapping was then conducted at a scale of 1:2,000, and type localities were identified. As a result of newer, higher-resolution datasets that are now available and more narrowly focused mapping, we identify a number of new geologic units. Erosional remnants of some units point to a substantial erosional history. Collectively, the stratigraphy records diverse sedimentary environments and more variability in the depositional and erosional histories than previously identified. This study helps bridge the gap between previous mapping efforts and detailed rover-scale mapping, and will enable rover observations to be more closely tied to orbital interpretations across the northwest flank of Aeolis Mons.

Mapping Hydrothermal Alteration Zones at a Sediment-Hosted Gold Deposit - Goldstrike Mining District, Utah, Using Ground-Based Hyperspectral Imaging

NASA Astrophysics Data System (ADS)

Krupnik, D.; Khan, S.; Crockett, M.

2017-12-01

Understanding the origin, genesis, as well as depositional and structural mechanisms of gold mineralization as well as detailed mapping of gold-bearing mineral phases at centimeter scale can be useful for exploration. This work was conducted in the Goldstrike mining district near St. George, UT, a structurally complex region which contains Carlin-style disseminated gold deposits in permeable sedimentary layers near high-angle fault zones. These fault zones are likely a conduit for gold-bearing hydrothermal fluids, are silicified, and are frequently gold-bearing. Alteration patterns are complex, difficult to distinguish visually, composed of several phases, and vary significantly over centimeter to meter scale distances. This makes identifying and quantifying the extent of the target zones costly, time consuming, and discontinuous with traditional geochemical methods. A ground-based hyperspectral scanning system with sensors collecting data in the Visible Near Infrared (VNIR) and Short-Wave Infrared (SWIR) portions of the electromagnetic spectrum are utilized for close-range outcrop scanning. Scans were taken of vertical exposures of both gold-bearing and barren silicified rocks (jasperoids), with the intent to produce images which delineate and quantify the extent of each phase of alteration, in combination with discrete geochemical data. This ongoing study produces mineralogical maps of surface minerals at centimeter scale, with the intent of mapping original and alteration minerals. This efficient method of outcrop characterization increases our understanding of fluid flow and alteration of economic deposits.

Interacting particle systems in time-dependent geometries

NASA Astrophysics Data System (ADS)

Ali, A.; Ball, R. C.; Grosskinsky, S.; Somfai, E.

2013-09-01

Many complex structures and stochastic patterns emerge from simple kinetic rules and local interactions, and are governed by scale invariance properties in combination with effects of the global geometry. We consider systems that can be described effectively by space-time trajectories of interacting particles, such as domain boundaries in two-dimensional growth or river networks. We study trajectories embedded in time-dependent geometries, and the main focus is on uniformly expanding or decreasing domains for which we obtain an exact mapping to simple fixed domain systems while preserving the local scale invariance properties. This approach was recently introduced in Ali et al (2013 Phys. Rev. E 87 020102(R)) and here we provide a detailed discussion on its applicability for self-affine Markovian models, and how it can be adapted to self-affine models with memory or explicit time dependence. The mapping corresponds to a nonlinear time transformation which converges to a finite value for a large class of trajectories, enabling an exact analysis of asymptotic properties in expanding domains. We further provide a detailed discussion of different particle interactions and generalized geometries. All our findings are based on exact computations and are illustrated numerically for various examples, including Lévy processes and fractional Brownian motion.

Application of gamma ray spectrometric measurements and VLF-EM data for tracing vein type uranium mineralization

NASA Astrophysics Data System (ADS)

Gaafar, Ibrahim

2015-12-01

This study is an attempt to use the gamma ray spectrometric measurements and VLF-EM data to identify the subsurface structure and map uranium mineralization along El Sela shear zone, South Eastern Desert of Egypt. Many injections more or less mineralized with uranium and associated with alteration processes were recorded in El Sela shear zone. As results from previous works, the emplacement of these injections is structurally controlled and well defined by large shear zones striking in an ENE-WSW direction and crosscut by NW-SE to NNW-SSE fault sets. VLF method has been applied to map the structure and the presence of radioactive minerals that have been delineated by the detection of high uranium mineralization. The electromagnetic survey was carried out to detect the presence of shallow and deep conductive zones that cross the granites along ENE-WSW fracturing directions and to map its spatial distribution. The survey comprised seventy N-S spectrometry and VLF-EM profiles with 20 m separation. The resulted data were displayed as composite maps for K, eU and eTh as well as VLF-Fraser map. Twelve profiles with 100 m separation were selected for detailed description. The VLF-EM data were interpreted qualitatively as well as quantitatively using the Fraser and the Karous-Hjelt filters. Fraser filtered data and relative current density pseudo-sections indicate the presence of shallow and deep conductive zones that cross the granites along ENE-WSW shearing directions. High uranium concentrations found just above the higher apparent current-density zones that coincide with El-Sela shear zone indicate a positive relation between conductivity and uranium minerals occurrence. This enables to infer that the anomalies detected by VLF-EM data are due to the highly conductive shear zone enriched with uranium mineralization extending for more than 80 m.

Geologic and Geophysical Framework of the Santa Rosa 7.5' Quadrangle, Sonoma County, California

USGS Publications Warehouse

McLaughlin, R.J.; Langenheim, V.E.; Sarna-Wojcicki, A. M.; Fleck, R.J.; McPhee, D.K.; Roberts, C.W.; McCabe, C.A.; Wan, Elmira

2008-01-01

The geologic and geophysical maps of Santa Rosa 7.5? quadrangle and accompanying structure sections portray the sedimentary and volcanic stratigraphy and crustal structure of the Santa Rosa 7.5? quadrangle and provide a context for interpreting the evolution of volcanism and active faulting in this region. The quadrangle is located in the California Coast Ranges north of San Francisco Bay and is traversed by the active Rodgers Creek, Healdsburg and Maacama Fault Zones. The geologic and geophysical data presented in this report, are substantial improvements over previous geologic and geophysical maps of the Santa Rosa area, allowing us to address important geologic issues. First, the geologic mapping is integrated with gravity and magnetic data, allowing us to depict the thicknesses of Cenozoic deposits, the depth and configuration of the Mesozoic basement surface, and the geometry of fault structures beneath this region to depths of several kilometers. This information has important implications for constraining the geometries of major active faults and for understanding and predicting the distribution and intensity of damage from ground shaking during earthquakes. Secondly, the geologic map and the accompanying description of the area describe in detail the distribution, geometry and complexity of faulting associated with the Rodgers Creek, Healdsburg and Bennett Valley Fault Zones and associated faults in the Santa Rosa quadrangle. The timing of fault movements is constrained by new 40Ar/39Ar ages and tephrochronologic correlations. These new data provide a better understanding of the stratigraphy of the extensive sedimentary and volcanic cover in the area and, in particular, clarify the formational affinities of Pliocene and Pleistocene nonmarine sedimentary units in the map area. Thirdly, the geophysics, particularly gravity data, indicate the locations of thick sections of sedimentary and volcanic fill within ground water basins of the Santa Rosa plain and Rincon, Bennett, and northwestern Sonoma Valleys, providing geohydrologists a more realistic framework for groundwater flow models.

Curriculum Mapping with Academic Analytics in Medical and Healthcare Education.

PubMed

Komenda, Martin; Víta, Martin; Vaitsis, Christos; Schwarz, Daniel; Pokorná, Andrea; Zary, Nabil; Dušek, Ladislav

2015-01-01

No universal solution, based on an approved pedagogical approach, exists to parametrically describe, effectively manage, and clearly visualize a higher education institution's curriculum, including tools for unveiling relationships inside curricular datasets. We aim to solve the issue of medical curriculum mapping to improve understanding of the complex structure and content of medical education programs. Our effort is based on the long-term development and implementation of an original web-based platform, which supports an outcomes-based approach to medical and healthcare education and is suitable for repeated updates and adoption to curriculum innovations. We adopted data exploration and visualization approaches in the context of medical curriculum innovations in higher education institutions domain. We have developed a robust platform, covering detailed formal metadata specifications down to the level of learning units, interconnections, and learning outcomes, in accordance with Bloom's taxonomy and direct links to a particular biomedical nomenclature. Furthermore, we used selected modeling techniques and data mining methods to generate academic analytics reports from medical curriculum mapping datasets. We present a solution that allows users to effectively optimize a curriculum structure that is described with appropriate metadata, such as course attributes, learning units and outcomes, a standardized vocabulary nomenclature, and a tree structure of essential terms. We present a case study implementation that includes effective support for curriculum reengineering efforts of academics through a comprehensive overview of the General Medicine study program. Moreover, we introduce deep content analysis of a dataset that was captured with the use of the curriculum mapping platform; this may assist in detecting any potentially problematic areas, and hence it may help to construct a comprehensive overview for the subsequent global in-depth medical curriculum inspection. We have proposed, developed, and implemented an original framework for medical and healthcare curriculum innovations and harmonization, including: planning model, mapping model, and selected academic analytics extracted with the use of data mining.

Curriculum Mapping with Academic Analytics in Medical and Healthcare Education

PubMed Central

Komenda, Martin; Víta, Martin; Vaitsis, Christos; Schwarz, Daniel; Pokorná, Andrea; Zary, Nabil; Dušek, Ladislav

2015-01-01

Background No universal solution, based on an approved pedagogical approach, exists to parametrically describe, effectively manage, and clearly visualize a higher education institution’s curriculum, including tools for unveiling relationships inside curricular datasets. Objective We aim to solve the issue of medical curriculum mapping to improve understanding of the complex structure and content of medical education programs. Our effort is based on the long-term development and implementation of an original web-based platform, which supports an outcomes-based approach to medical and healthcare education and is suitable for repeated updates and adoption to curriculum innovations. Methods We adopted data exploration and visualization approaches in the context of medical curriculum innovations in higher education institutions domain. We have developed a robust platform, covering detailed formal metadata specifications down to the level of learning units, interconnections, and learning outcomes, in accordance with Bloom’s taxonomy and direct links to a particular biomedical nomenclature. Furthermore, we used selected modeling techniques and data mining methods to generate academic analytics reports from medical curriculum mapping datasets. Results We present a solution that allows users to effectively optimize a curriculum structure that is described with appropriate metadata, such as course attributes, learning units and outcomes, a standardized vocabulary nomenclature, and a tree structure of essential terms. We present a case study implementation that includes effective support for curriculum reengineering efforts of academics through a comprehensive overview of the General Medicine study program. Moreover, we introduce deep content analysis of a dataset that was captured with the use of the curriculum mapping platform; this may assist in detecting any potentially problematic areas, and hence it may help to construct a comprehensive overview for the subsequent global in-depth medical curriculum inspection. Conclusions We have proposed, developed, and implemented an original framework for medical and healthcare curriculum innovations and harmonization, including: planning model, mapping model, and selected academic analytics extracted with the use of data mining. PMID:26624281

Lunar apennine-hadley region: geological inplications of Earth-based radar and infrared measurements.

PubMed

Zisk, S H; Carr, M H; Masursky, H; Shorthill, R W; Thompson, T W

1971-08-27

Recently completed high-resolution radar maps of the moon contain information on the decimeter-scale structure of the surface. When this information is combined with eclipse thermal-enhancement data and with high-resolution Lunar Orbiter photography, the surface morphology is revealed in some detail. A geological history for certain features and subareas can be developed, which provides one possible framework for the interpretation of the findings from the Apollo 15 landing. Frequency of decimeter-and meter-size blocks in and around lunar craters, given by the remote-sensed data, supports a multilayer structure in the Palus Putredinis mare region, as well as a great age for the bordering Apennine Mountains scarp.

Lunar Apennine-Hadley region: Geological implications of earth-based radar and infrared measurements

USGS Publications Warehouse

Zisk, S.H.; Carr, M.H.; Masursky, H.; Shorthill, R.W.; Thompson, T.W.

1971-01-01

Recently completed high-resolution radar maps of the moon contain information on the decimeter-scale structure of the surface. When this information is combined with eclipse thermal-enhancement data and with high-resolution Lunar Orbiter photography, the surface morphology is revealed in some detail. A geological history for certain features and subareas can be developed, which provides one possible framework for the interpretation of the findings from the Apollo 15 landing. Frequency of decimeter- and meter-size blocks in and around lunar craters, given by the remote-sensed data, supports a multilayer structure in the Palus Putredinis mare region, as well as a great age for the bordering Apennins Mountains scarp.

Mineralization in the Uyaijah-Thaaban area, west-central part of the Uyaijah ring structure, Kingdom of Saudi Arabia

USGS Publications Warehouse

Dodge, F.C.; Helaby, A.M.

1975-01-01

Anomalous amounts of tungsten, molybdenum, and bismuth were found previously in surficial debris collected from the Uyaijah-Thaaban area in the west-central part of the Precambrian Al Uyaijah ring structure. The area is mostly underlain by quartz monzonite. Countless quartz veins ranging from a knife edge to more than 3 m in thickness cut the quartz monzonite; many of these veins contain molybdenite. Detailed mapping and intensive sampling of the molybdenite-bearing quartz veins indicate that their grade and quantity are probably inadequate to permit present-day mining; however, they represent a potential future resource. The tungsten of the area appears to be negligible.

The thickness of cover sequences in the Western Desert of Iraq from a power spectrum analysis of gravity and magnetic data

NASA Astrophysics Data System (ADS)

Mousa, Ahmed; Mickus, Kevin; Al-Rahim, Ali

2017-05-01

The Western Desert of Iraq is part of the stable shelf region on the Arabian Plate where the subsurface structural makeup is relatively unknown due to the lack of cropping out rocks, deep drill holes and deep seismic refraction and reflection profiles. To remedy this situation, magnetic and gravity data were analyzed to determine the thickness of the Phanerozoic cover sequences. The 2-D power spectrum method was used to estimate the depth to density and magnetic susceptibility interfaces by using 0.5° square windows. Additionally, the gravity data were analyzed using isostatic residual and decompensative methods to isolate gravity anomalies due to upper crustal density sources. The decompensative gravity anomaly and the differentially reduced to the pole magnetic map indicate a series of mainly north-south and northwest-southeast trending maxima and minima anomalies related to Proterozoic basement lithologies and the varying thickness of cover sequences. The magnetic and gravity derived thickness of cover sequences maps indicate that these thicknesses range from 4.5 to 11.5 km. Both maps in general are in agreement but more detail in the cover thicknesses was determined by the gravity analysis. The gravity-based cover thickness maps indicates regions with shallower depths than the magnetic-based cover thickness t map which may be due to density differences between limestone and shale units within the Paleozoic sediments. The final thickness maps indicate that the Western Desert is a complicated region of basins and uplifts that are more complex than have been shown on previous structural maps of the Western Desert. These basins and uplifts may be related to Paleozoic compressional tectonic events and possibly to the opening of the Tethys Ocean. In addition, petroleum exploration could be extended to three basins outlined by our analysis within the relatively unexplored western portions of the Western Desert.

FORUM: A Suggestion for an Improved Vegetation Scheme for Local and Global Mapping and Monitoring.

PubMed

ADAMS

1999-01-01

/ Understanding of global ecological problems is at least partly dependent on clear assessments of vegetation change, and such assessment is always dependent on the use of a vegetation classification scheme. Use of satellite remotely sensed data is the only practical means of carrying out any global-scale vegetation mapping exercise, but if the resulting maps are to be useful to most ecologists and conservationists, they must be closely tied to clearly defined features of vegetation on the ground. Furthermore, much of the mapping that does take place involves more local-scale description of field sites; for purposes of cost and practicality, such studies usually do not involve remote sensing using satellites. There is a need for a single scheme that integrates the smallest to the largest scale in a way that is meaningful to most environmental scientists. Existing schemes are unsatisfactory for this task; they are ambiguous, unnecessarily complex, and their categories do not correspond to common-sense definitions. In response to these problems, a simple structural-physiognomically based scheme with 23 fundamental categories is proposed here for mapping and monitoring on any scale, from local to global. The fundamental categories each subdivide into more specific structural categories for more detailed mapping, but all the categories can be used throughout the world and at any scale, allowing intercomparison between regions. The next stage in the process will be to obtain the views of as many people working in as many different fields as possible, to see whether the proposed scheme suits their needs and how it should be modified. With a few modifications, such a scheme could easily be appended to an existing land cover classification scheme, such as the FAO system, greatly increasing the usefulness and accessability of the results of the landcover classification. KEY WORDS: Vegetation scheme; Mapping; Monitoring; Land cover

Bird-habitat relationships in interior Columbia Basin shrubsteppe

USGS Publications Warehouse

Earnst, S.L.; Holmes, A.L.

2012-01-01

Vegetation structure is considered an important habitat feature structuring avian communities. In the sagebrush biome, both remotely-sensed and field-acquired measures of big sagebrush (Artemisia tridentata) cover have proven valuable in understanding avian abundance. Differences in structure between the exotic annual cheatgrass (Bromus tectorum) and native bunchgrasses are also expected to be important. We used avian abundance data from 318 point count stations, coupled with field vegetation measurements and a detailed vegetation map, to model abundance for four shrub- and four grassland-associated avian species in southeastern Washington shrubsteppe. Specifically, we ask whether species distinguish between bunchgrass and cheatgrass, and whether mapped, categorical cover types adequately explain species' abundance or whether fine-grained, field-measured differences in vegetation cover are also important. Results indicate that mapped cover types alone can be useful for predicting patterns of distribution and abundance within the sagebrush biome for several avian species (five of eight studied here). However, field-measured sagebrush cover was a strong positive predictor for Sage Sparrow (Amphispiza belli), the only sagebrush obligate in this study, and a strong negative predictor for two grassland associates, Horned Lark (Eremophila alpestris) and Grasshopper Sparrow (Ammodramus savannarum). Likewise, shrub associates did not differ in abundance in sagebrush with a cheatgrass vs. bunchgrass understory, but grassland associates were more common in either bunchgrass (Horned Lark and Grasshopper Sparrow) or cheatgrass grasslands (Long-billed Curlew, Numenius americanus), or tended to use sagebrush-cheatgrass less than sagebrush-bunchgrass (Horned Lark, Grasshopper Sparrow, and Savannah Sparrow, Passerculus sandwichensis).

Image Analysis of DNA Fiber and Nucleus in Plants.

PubMed

Ohmido, Nobuko; Wako, Toshiyuki; Kato, Seiji; Fukui, Kiichi

2016-01-01

Advances in cytology have led to the application of a wide range of visualization methods in plant genome studies. Image analysis methods are indispensable tools where morphology, density, and color play important roles in the biological systems. Visualization and image analysis methods are useful techniques in the analyses of the detailed structure and function of extended DNA fibers (EDFs) and interphase nuclei. The EDF is the highest in the spatial resolving power to reveal genome structure and it can be used for physical mapping, especially for closely located genes and tandemly repeated sequences. One the other hand, analyzing nuclear DNA and proteins would reveal nuclear structure and functions. In this chapter, we describe the image analysis protocol for quantitatively analyzing different types of plant genome, EDFs and interphase nuclei.

Geologic map of Big Bend National Park, Texas

USGS Publications Warehouse

Turner, Kenzie J.; Berry, Margaret E.; Page, William R.; Lehman, Thomas M.; Bohannon, Robert G.; Scott, Robert B.; Miggins, Daniel P.; Budahn, James R.; Cooper, Roger W.; Drenth, Benjamin J.; Anderson, Eric D.; Williams, Van S.

2011-01-01

The purpose of this map is to provide the National Park Service and the public with an updated digital geologic map of Big Bend National Park (BBNP). The geologic map report of Maxwell and others (1967) provides a fully comprehensive account of the important volcanic, structural, geomorphological, and paleontological features that define BBNP. However, the map is on a geographically distorted planimetric base and lacks topography, which has caused difficulty in conducting GIS-based data analyses and georeferencing the many geologic features investigated and depicted on the map. In addition, the map is outdated, excluding significant data from numerous studies that have been carried out since its publication more than 40 years ago. This report includes a modern digital geologic map that can be utilized with standard GIS applications to aid BBNP researchers in geologic data analysis, natural resource and ecosystem management, monitoring, assessment, inventory activities, and educational and recreational uses. The digital map incorporates new data, many revisions, and greater detail than the original map. Although some geologic issues remain unresolved for BBNP, the updated map serves as a foundation for addressing those issues. Funding for the Big Bend National Park geologic map was provided by the United States Geological Survey (USGS) National Cooperative Geologic Mapping Program and the National Park Service. The Big Bend mapping project was administered by staff in the USGS Geology and Environmental Change Science Center, Denver, Colo. Members of the USGS Mineral and Environmental Resources Science Center completed investigations in parallel with the geologic mapping project. Results of these investigations addressed some significant current issues in BBNP and the U.S.-Mexico border region, including contaminants and human health, ecosystems, and water resources. Funding for the high-resolution aeromagnetic survey in BBNP, and associated data analyses and interpretation, was from the USGS Crustal Geophysics and Geochemistry Science Center. Mapping contributed from university professors and students was mostly funded by independent sources, including academic institutions, private industry, and other agencies.

Visible Wavelength Exoplanet Phase Curves from Global Albedo Maps

NASA Astrophysics Data System (ADS)

Webber, Matthew; Cahoy, Kerri Lynn

2015-01-01

To investigate the effect of three-dimensional global albedo maps we use an albedo model that: calculates albedo spectra for each points across grid in longitude and latitude on the planetary disk, uses the appropriate angles for the source-observer geometry for each location, and then weights and sums these spectra using the Tschebychev-Gauss integration method. This structure permits detailed 3D modeling of an illuminated planetary disk and computes disk-integrated phase curves. Different pressure-temperature profiles are used for each location based on geometry and dynamics. We directly couple high-density pressure maps from global dynamic radiative-transfer models to compute global cloud maps. Cloud formation is determined from the correlation of the species condensation curves with the temperature-pressure profiles. We use the detailed cloud patterns, of spatial-varying composition and temperature, to determine the observable albedo spectra and phase curves for exoplanets Kepler-7b and HD189733b. These albedo spectra are used to compute planet-star flux ratios using PHOENIX stellar models, exoplanet orbital parameters, and telescope transmission functions. Insight from the Earthshine spectrum and solid surface albedo functions (e.g. water, ice, snow, rocks) are used with our planetary grid to determine the phase curve and flux ratios of non-uniform Earth and Super Earth-like exoplanets with various rotation rates and stellar types. Predictions can be tailored to the visible and Near-InfraRed (NIR) spectral windows for the Kepler space telescope, Hubble space telescope, and future observatories (e.g. WFIRST, JWST, Exo-C, Exo-S). Additionally, we constrain the effect of exoplanet urban-light on the shape of the night-side phase curve for Earths and Super-Earths.

Early Restoration Projects Atlas | NOAA Gulf Spill Restoration

Science.gov Websites

trustees are implementing. To view details of an individual project, click the View icon on the list below or click the project marker on the map. For definitions of the project detail click here. To highlight the location of a project from the list, click the Show on Map icon. This atlas will be updated as

Wildland resource information system: user's guide

Treesearch

Robert M. Russell; David A. Sharpnack; Elliot L. Amidon

1975-01-01

This user's guide provides detailed information about how to use the computer programs of WRIS, a computer system for storing and manipulating data about land areas. Instructions explain how to prepare maps, digitize by automatic scanners or by hand, produce polygon maps, and combine map layers. Support programs plot maps, store them on tapes, produce summaries,...

Fuzzy cognitive maps for issue identification in a water resources conflict resolution system

NASA Astrophysics Data System (ADS)

Giordano, R.; Passarella, G.; Uricchio, V. F.; Vurro, M.

In water management, conflicts of interests are inevitable due to the variety in quality demands and the number of stakeholders, which are affected in different ways by decisions concerning the use of the resources. Ignoring the differences among interests involved in water resources management and not resolving the emerging conflicts could lead to controversial strategies. In such cases, proposed solutions could generate strong opposition, making these solutions unfeasible. In our contribution, a Community Decision Support System is proposed. Such a system is able to support discussion and collaboration. The system helps participants to structure their problem, to help them learn about possible alternatives, their constraints and implications and to support the participants in the specification of their own preferences. More in detail, the proposed system helps each user in representing and communicating problem perspectives. To reach this aim, cognitive maps are used to capture parts of the stakeholders’ point of view and to enhance negotiation among individuals and organizations. The aim of the negotiation process is to define a shared cognitive map with regard to water management problems. Such a map can be called a water community cognitive map. The system performance has been tested by simulating a real conflict on water resources management that occurred some years ago in a river basin in the south of Italy.

The Andromeda Optical and Infrared Disk Survey

NASA Astrophysics Data System (ADS)

Sick, J.; Courteau, S.; Cuillandre, J.-C.

2014-03-01

The Andromeda Optical and Infrared Disk Survey has mapped M31 in u* g' r' i' JKs wavelengths out to R = 40 kpc using the MegaCam and WIRCam wide-field cameras on the Canada-France-Hawaii Telescope. Our survey is uniquely designed to simultaneously resolve stars while also carefully reproducing the surface brightness of M31, allowing us to study M31's global structure in the context of both resolved stellar populations and spectral energy distributions. We use the Elixir-LSB method to calibrate the optical u* g' r' i' images by building real-time maps of the sky background with sky-target nodding. These maps are stable to μg ≲ 28.5 mag arcsec-2 and reveal warps in the outer M31 disk in surface brightness. The equivalent WIRCam mapping in the near-infrared uses a combination of sky-target nodding and image-to-image sky offset optimization to produce stable surface brightnesses. This study enables a detailed analysis of the systematics of spectral energy distribution fitting with near-infrared bands where asymptotic giant branch stars impose a significant, but ill-constrained, contribution to the near-infrared light of a galaxy. Here we present panchromatic surface brightness maps and initial results from our near-infrared resolved stellar catalog.

Forest cover type analysis of New England forests using innovative WorldView-2 imagery

NASA Astrophysics Data System (ADS)

Kovacs, Jenna M.

For many years, remote sensing has been used to generate land cover type maps to create a visual representation of what is occurring on the ground. One significant use of remote sensing is the identification of forest cover types. New England forests are notorious for their especially complex forest structure and as a result have been, and continue to be, a challenge when classifying forest cover types. To most accurately depict forest cover types occurring on the ground, it is essential to utilize image data that have a suitable combination of both spectral and spatial resolution. The WorldView-2 (WV2) commercial satellite, launched in 2009, is the first of its kind, having both high spectral and spatial resolutions. WV2 records eight bands of multispectral imagery, four more than the usual high spatial resolution sensors, and has a pixel size of 1.85 meters at the nadir. These additional bands have the potential to improve classification detail and classification accuracy of forest cover type maps. For this reason, WV2 imagery was utilized on its own, and in combination with Landsat 5 TM (LS5) multispectral imagery, to evaluate whether these image data could more accurately classify forest cover types. In keeping with recent developments in image analysis, an Object-Based Image Analysis (OBIA) approach was used to segment images of Pawtuckaway State Park and nearby private lands, an area representative of the typical complex forest structure found in the New England region. A Classification and Regression Tree (CART) analysis was then used to classify image segments at two levels of classification detail. Accuracies for each forest cover type map produced were generated using traditional and area-based error matrices, and additional standard accuracy measures (i.e., KAPPA) were generated. The results from this study show that there is value in analyzing imagery with both high spectral and spatial resolutions, and that WV2's new and innovative bands can be useful for the classification of complex forest structures.

The Documentation of Historic Maps of World Heritage Site City Suzhou

NASA Astrophysics Data System (ADS)

Guangwei, Z.

2013-07-01

Documentation and analysis of historic maps enhance understanding of temporal and spatial interactions between events and the evolution of physical canals upon which they occurred. And the challenge of this work lies on carefully sifting of information through the maps drawn with relative accuracy by traditional cartographical principles before the emergence of scientific survey. This research project focuses on sorting out the evolution of historic city Suzhou in a spatio-temporal view. The investigation was conducted through an in-depth analysis of historic maps. Re-projection of the geographical elements of the city to one single georeference, that is to say a standard map BASE, help acquiring an actual sense of the scale and facilitate the recognition of the city's evolution in clear details. It is an important contribution of this thesis in coordination of variously distorted geographical information contained in nineteen periods span from 1229 to 2013 into a single research resource. Through the work both quantitative and qualitative, a clear vision of the evolution and characteristics of the urban structure of ancient Suzhou is achieved. Meanwhile, in the process of projecting the historical geometrical information onto the topographic map, historical bibliographic and cartographic records is key to the data coordination and readjustment, this inspire as well on the cautious utilization of historical materials from ancient time in the recording, documentation work.

Statistical-mechanical analysis of self-organization and pattern formation during the development of visual maps

NASA Astrophysics Data System (ADS)

Obermayer, K.; Blasdel, G. G.; Schulten, K.

1992-05-01

We report a detailed analytical and numerical model study of pattern formation during the development of visual maps, namely, the formation of topographic maps and orientation and ocular dominance columns in the striate cortex. Pattern formation is described by a stimulus-driven Markovian process, the self-organizing feature map. This algorithm generates topologically correct maps between a space of (visual) input signals and an array of formal ``neurons,'' which in our model represents the cortex. We define order parameters that are a function of the set of visual stimuli an animal perceives, and we demonstrate that the formation of orientation and ocular dominance columns is the result of a global instability of the retinoptic projection above a critical value of these order parameters. We characterize the spatial structure of the emerging patterns by power spectra, correlation functions, and Gabor transforms, and we compare model predictions with experimental data obtained from the striate cortex of the macaque monkey with optical imaging. Above the critical value of the order parameters the model predicts a lateral segregation of the striate cortex into (i) binocular regions with linear changes in orientation preference, where iso-orientation slabs run perpendicular to the ocular dominance bands, and (ii) monocular regions with low orientation specificity, which contain the singularities of the orientation map. Some of these predictions have already been verified by experiments.

Open-Source GIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vatsavai, Raju; Burk, Thomas E; Lime, Steve

2012-01-01

The components making up an Open Source GIS are explained in this chapter. A map server (Sect. 30.1) can broadly be defined as a software platform for dynamically generating spatially referenced digital map products. The University of Minnesota MapServer (UMN Map Server) is one such system. Its basic features are visualization, overlay, and query. Section 30.2 names and explains many of the geospatial open source libraries, such as GDAL and OGR. The other libraries are FDO, JTS, GEOS, JCS, MetaCRS, and GPSBabel. The application examples include derived GIS-software and data format conversions. Quantum GIS, its origin and its applications explainedmore » in detail in Sect. 30.3. The features include a rich GUI, attribute tables, vector symbols, labeling, editing functions, projections, georeferencing, GPS support, analysis, and Web Map Server functionality. Future developments will address mobile applications, 3-D, and multithreading. The origins of PostgreSQL are outlined and PostGIS discussed in detail in Sect. 30.4. It extends PostgreSQL by implementing the Simple Feature standard. Section 30.5 details the most important open source licenses such as the GPL, the LGPL, the MIT License, and the BSD License, as well as the role of the Creative Commons.« less

Description and validation of an automated methodology for mapping mineralogy, vegetation, and hydrothermal alteration type from ASTER satellite imagery with examples from the San Juan Mountains, Colorado

USGS Publications Warehouse

Rockwell, Barnaby W.

2012-01-01

The efficacy of airborne spectroscopic, or "hyperspectral," remote sensing for geoenvironmental watershed evaluations and deposit-scale mapping of exposed mineral deposits has been demonstrated. However, the acquisition, processing, and analysis of such airborne data at regional and national scales can be time and cost prohibitive. The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor carried by the NASA Earth Observing System Terra satellite was designed for mineral mapping and the acquired data can be efficiently used to generate uniform mineral maps over very large areas. Multispectral remote sensing data acquired by the ASTER sensor were analyzed to identify and map minerals, mineral groups, hydrothermal alteration types, and vegetation groups in the western San Juan Mountains, Colorado, including the Silverton and Lake City calderas. This mapping was performed in support of multidisciplinary studies involving the predictive modeling of surface water geochemistry at watershed and regional scales. Detailed maps of minerals, vegetation groups, and water were produced from an ASTER scene using spectroscopic, expert system-based analysis techniques which have been previously described. New methodologies are presented for the modeling of hydrothermal alteration type based on the Boolean combination of the detailed mineral maps, and for the entirely automated mapping of alteration types, mineral groups, and green vegetation. Results of these methodologies are compared with the more detailed maps and with previously published mineral mapping results derived from analysis of high-resolution spectroscopic data acquired by the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) sensor. Such comparisons are also presented for other mineralized and (or) altered areas including the Goldfield and Cuprite mining districts, Nevada and the central Marysvale volcanic field, Wah Wah Mountains, and San Francisco Mountains, Utah. The automated mineral group mapping products described in this study are ideal for application to mineral resource and mineral-environmental assessments at regional and national scales.

High resolution optical DNA mapping

NASA Astrophysics Data System (ADS)

Baday, Murat

Many types of diseases including cancer and autism are associated with copy-number variations in the genome. Most of these variations could not be identified with existing sequencing and optical DNA mapping methods. We have developed Multi-color Super-resolution technique, with potential for high throughput and low cost, which can allow us to recognize more of these variations. Our technique has made 10--fold improvement in the resolution of optical DNA mapping. Using a 180 kb BAC clone as a model system, we resolved dense patterns from 108 fluorescent labels of two different colors representing two different sequence-motifs. Overall, a detailed DNA map with 100 bp resolution was achieved, which has the potential to reveal detailed information about genetic variance and to facilitate medical diagnosis of genetic disease.

Community mapping and respondent-driven sampling of gay and bisexual men’s communities in Vancouver, Canada

PubMed Central

Forrest, Jamie I; Stevenson, Benjamin; Rich, Ashleigh; Michelow, Warren; Pai, Jayaram; Jollimore, Jody; Raymond, H. Fisher; Moore, David; Hogg, Robert S; Roth, Eric A

2014-01-01

Literature suggests formative research is vital for those using respondent-driven sampling (RDS) to study hidden populations of interest. However, few authors have described in detail how different qualitative methodologies can address the objectives of formative research for understanding the social network properties of the study population, selecting seeds, and adapting survey logistics to best fit the population. In this paper we describe the use of community mapping exercises as a tool within focus groups to collect data on social and sexual network characteristics of gay and bisexual men in the metropolitan area of Vancouver, Canada. Three key themes emerged from analyzing community maps along with other formative research data: (a) connections between physical spaces and social networks of gay and bisexual men, (b) diversity in communities, and (c) substance use connected with formation of sub-communities. We discuss how these themes informed the planning and operations of a longitudinal epidemiological cohort study recruited by RDS. We argue that using community mapping within formative research is a valuable qualitative tool for characterizing network structures of a diverse and differentiated population of gay and bisexual men in a highly developed urban setting. PMID:24512070

Multiseasonal Tree Crown Structure Mapping with Point Clouds from OTS Quadrocopter Systems

NASA Astrophysics Data System (ADS)

Hese, S.; Behrendt, F.

2017-08-01

OTF (Off The Shelf) quadro copter systems provide a cost effective (below 2000 Euro), flexible and mobile platform for high resolution point cloud mapping. Various studies showed the full potential of these small and flexible platforms. Especially in very tight and complex 3D environments the automatic obstacle avoidance, low copter weight, long flight times and precise maneuvering are important advantages of these small OTS systems in comparison with larger octocopter systems. This study examines the potential of the DJI Phantom 4 pro series and the Phantom 3A series for within-stand and forest tree crown 3D point cloud mapping using both within stand oblique imaging in different altitude levels and data captured from a nadir perspective. On a test site in Brandenburg/Germany a beach crown was selected and measured with 3 different altitude levels in Point Of Interest (POI) mode with oblique data capturing and deriving one nadir mosaic created with 85/85 % overlap using Drone Deploy automatic mapping software. Three different flight campaigns were performed, one in September 2016 (leaf-on), one in March 2017 (leaf-off) and one in May 2017 (leaf-on) to derive point clouds from different crown structure and phenological situations - covering the leaf-on and leafoff status of the tree crown. After height correction, the point clouds where used with GPS geo referencing to calculate voxel based densities on 50 × 10 × 10 cm voxel definitions using a topological network of chessboard image objects in 0,5 m height steps in an object based image processing environment. Comparison between leaf-off and leaf-on status was done on volume pixel definitions comparing the attributed point densities per volume and plotting the resulting values as a function of distance to the crown center. In the leaf-off status SFM (structure from motion) algorithms clearly identified the central stem and also secondary branch systems. While the penetration into the crown structure is limited in the leaf-on status (the point cloud is a mainly a description of the interpolated crown surface) - the visibility of the internal crown structure in leaf-off status allows to map also the internal tree structure up to and stopping at the secondary branch level system. When combined the leaf-on and leaf-off point clouds generate a comprehensive tree crown structure description that allows a low cost and detailed 3D crown structure mapping and potentially precise biomass mapping and/or internal structural differentiation of deciduous tree species types. Compared to TLS (Terrestrial Laser Scanning) based measurements the costs are neglectable and in the range of 1500-2500 €. This suggests the approach for low cost but fine scale in-situ applications and/or projects where TLS measurements cannot be derived and for less dense forest stands where POI flights can be performed. This study used the in-copter GPS measurements for geo referencing. Better absolute geo referencing results will be obtained with DGPS reference points. The study however clearly demonstrates the potential of OTS very low cost copter systems and the image attributed GPS measurements of the copter for the automatic calculation of complex 3D point clouds in a multi temporal tree crown mapping context.

LIFTING THE DUSTY VEIL WITH NEAR- AND MID-INFRARED PHOTOMETRY. III. TWO-DIMENSIONAL EXTINCTION MAPS OF THE GALACTIC MIDPLANE USING THE RAYLEIGH-JEANS COLOR EXCESS METHOD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nidever, David L.; Zasowski, Gail; Majewski, Steven R., E-mail: dln5q@virginia.edu, E-mail: gz2n@virginia.edu, E-mail: srm4n@virginia.edu

We provide new, high-resolution A(K{sub s} ) extinction maps of the heavily reddened Galactic midplane based on the Rayleigh-Jeans Color Excess ({sup R}JCE{sup )} method. RJCE determines star-by-star reddening based on a combination of near- and mid-infrared photometry. The new RJCE-generated maps have 2' Multiplication-Sign 2' pixels and span some of the most severely extinguished regions of the Galaxy-those covered with Spitzer/IRAC imaging by the GLIMPSE-I, -II, -3D, and Vela-Carina surveys, from 256 Degree-Sign < l < 65 Degree-Sign and, in general, for |b| {<=} 1 Degree-Sign -1.{sup 0}5 (extending up to |b| {<=} 4 Degree-Sign in the bulge). Usingmore » RJCE extinction measurements, we generate dereddened color-magnitude diagrams and, in turn, create maps based on main sequence, red clump, and red giant star tracers, each probing different distances and thereby providing coarse three-dimensional information on the relative placement of dust cloud structures. The maps generated from red giant stars, which reach to {approx}18-20 kpc, probe beyond most of the Milky Way extinction in most directions and provide close to a 'total Galactic extinction' map-at minimum they provide high angular resolution maps of lower limits on A(K{sub s} ). Because these maps are generated directly from measurements of reddening by the very dust being mapped, rather than inferred on the basis of some less direct means, they are likely the most accurate to date for charting in detail the highly patchy differential extinction in the Galactic midplane. We provide downloadable FITS files and an IDL tool for retrieving extinction values for any line of sight within our mapped regions.« less

Linear structures on the small inner satellites of Saturn

NASA Technical Reports Server (NTRS)

Stooke, Philip J.

1993-01-01

Shape modelling methods developed for non-spherical worlds were applied to four satellites of Saturn: Prometheus, Pandora, Janus, and Epimetheus. This results in the first detailed shaded relief maps of their surfaces. Ridges and valleys are described with their implications for satellite history and asteroid 951 Gaspra. They probably result from fracturing during break-up of parent bodies and/or later large impacts. Prometheus and perhaps Gaspra may be coated with debris from parent body fragmentation as well as more recent regolith. These four satellites are covered by relatively few useful images, so the shapes are imperfectly known and positions of features on maps may be wrong by up to a few tens of degrees in some areas (worst where a feature is seen only near a limb). Nevertheless, these shape models are more useful than the previous triaxial ellipsoid models.

Engineering management technologies of increasing energy efficiency processes in the investment and construction projects

NASA Astrophysics Data System (ADS)

Borisovich Zelentsov, Leonid; Dmitrievna Mailyan, Liya; Sultanovich Shogenov, Murat

2017-10-01

The article deals with the problems of using the energy-efficient materials and engineering technologies during the construction of buildings and structures. As the analysis showed, one of the most important problems in this sphere is the infringement of production technologies working with energy-efficient materials. To improve the given situation, it is offered to set a technological normal at the design stage by means of working out the technological maps studying the set and the succession of operations in details, taking in mind the properties of energy-efficient materials. At Don State Technical University (DSTU) the intelligent systems of management are being developed providing organizational and technological and also informational integration of design and production stages by means of creating the single database of technological maps, volumes of work and resources.

Spectral flow as a map between N = (2 , 0)-models

NASA Astrophysics Data System (ADS)

Athanasopoulos, P.; Faraggi, A. E.; Gepner, D.

2014-07-01

The space of (2 , 0) models is of particular interest among all heterotic-string models because it includes the models with the minimal SO (10) unification structure, which is well motivated by the Standard Model of particle physics data. The fermionic Z2 ×Z2 heterotic-string models revealed the existence of a new symmetry in the space of string configurations under the exchange of spinors and vectors of the SO (10) GUT group, dubbed spinor-vector duality. In this paper we generalize this idea to arbitrary internal rational conformal field theories (RCFTs). We explain how the spectral flow operator normally acting within a general (2 , 2) theory can be used as a map between (2 , 0) models. We describe the details, give an example and propose more simple currents that can be used in a similar way.

Moisture analysis from radiosonde and microwave spectrometer data

NASA Technical Reports Server (NTRS)

Haydu, K. J.; Krishnamurti, T. N.

1981-01-01

A method for analysis of the horizontal and vertical distributions of the moisture field utilizing satellite, upper air and surface data is proposed in this paper. A brief overview of the microwave sensors on board Nimbus 5 and 6 is also presented. A technique is provided utilizing the radiosonde data sets to calibrate the satellite field of total precipitable water. Next, the calibrated satellite-derived field is utilized along with ship and coastal reports of moisture, and a vertical structure function to generate vertical distribution of moisture and thus provide a mapping of specific humidity at several levels in the troposphere. Utilizing these procedures, analyses for several case studies were performed. The resultant maps show detailed distribution of specific humidity along with some interesting climatological features. A reasonable acceptance of the available aerological data sets by the analysis scheme is demonstrated.

Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration

PubMed Central

Miller, Thomas F.

2017-01-01

We present a coarse-grained simulation model that is capable of simulating the minute-timescale dynamics of protein translocation and membrane integration via the Sec translocon, while retaining sufficient chemical and structural detail to capture many of the sequence-specific interactions that drive these processes. The model includes accurate geometric representations of the ribosome and Sec translocon, obtained directly from experimental structures, and interactions parameterized from nearly 200 μs of residue-based coarse-grained molecular dynamics simulations. A protocol for mapping amino-acid sequences to coarse-grained beads enables the direct simulation of trajectories for the co-translational insertion of arbitrary polypeptide sequences into the Sec translocon. The model reproduces experimentally observed features of membrane protein integration, including the efficiency with which polypeptide domains integrate into the membrane, the variation in integration efficiency upon single amino-acid mutations, and the orientation of transmembrane domains. The central advantage of the model is that it connects sequence-level protein features to biological observables and timescales, enabling direct simulation for the mechanistic analysis of co-translational integration and for the engineering of membrane proteins with enhanced membrane integration efficiency. PMID:28328943

Toward an operational framework for fine-scale urban land-cover mapping in Wallonia using submeter remote sensing and ancillary vector data

NASA Astrophysics Data System (ADS)

Beaumont, Benjamin; Grippa, Tais; Lennert, Moritz; Vanhuysse, Sabine; Stephenne, Nathalie; Wolff, Eléonore

2017-07-01

Encouraged by the EU INSPIRE directive requirements and recommendations, the Walloon authorities, similar to other EU regional or national authorities, want to develop operational land-cover (LC) and land-use (LU) mapping methods using existing geodata. Urban planners and environmental monitoring stakeholders of Wallonia have to rely on outdated, mixed, and incomplete LC and LU information. The current reference map is 10-years old. The two object-based classification methods, i.e., a rule- and a classifier-based method, for detailed regional urban LC mapping are compared. The added value of using the different existing geospatial datasets in the process is assessed. This includes the comparison between satellite and aerial optical data in terms of mapping accuracies, visual quality of the map, costs, processing, data availability, and property rights. The combination of spectral, tridimensional, and vector data provides accuracy values close to 0.90 for mapping the LC into nine categories with a minimum mapping unit of 15 m2. Such a detailed LC map offers opportunities for fine-scale environmental and spatial planning activities. Still, the regional application poses challenges regarding automation, big data handling, and processing time, which are discussed.

Hyperbolic chaos in the klystron-type microwave vacuum tube oscillator

NASA Astrophysics Data System (ADS)

Emel'yanov, V. V.; Kuznetsov, S. P.; Ryskin, N. M.

2010-12-01

The ring-loop oscillator consisting of two coupled klystrons which is capable of generating hyperbolic chaotic signal in the microwave band is considered. The system of delayed-differential equations describing the dynamics of the oscillator is derived. This system is further reduced to the two-dimensional return map under the assumption of the instantaneous build-up of oscillations in the cavities. The results of detailed numerical simulation for both models are presented showing that there exists large enough range of control parameters where the sustained regime corresponds to the structurally stable hyperbolic chaos.

Multiscale infrared and visible image fusion using gradient domain guided image filtering

NASA Astrophysics Data System (ADS)

Zhu, Jin; Jin, Weiqi; Li, Li; Han, Zhenghao; Wang, Xia

2018-03-01

For better surveillance with infrared and visible imaging, a novel hybrid multiscale decomposition fusion method using gradient domain guided image filtering (HMSD-GDGF) is proposed in this study. In this method, hybrid multiscale decomposition with guided image filtering and gradient domain guided image filtering of source images are first applied before the weight maps of each scale are obtained using a saliency detection technology and filtering means with three different fusion rules at different scales. The three types of fusion rules are for small-scale detail level, large-scale detail level, and base level. Finally, the target becomes more salient and can be more easily detected in the fusion result, with the detail information of the scene being fully displayed. After analyzing the experimental comparisons with state-of-the-art fusion methods, the HMSD-GDGF method has obvious advantages in fidelity of salient information (including structural similarity, brightness, and contrast), preservation of edge features, and human visual perception. Therefore, visual effects can be improved by using the proposed HMSD-GDGF method.